Citrus Sinensis ID: 047733

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
Protein Sequence
MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHESTKKVFPNLEYLSQRVWCD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEEEcccccccccccccccccccEEEcccccccccccccccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEcccccccccccccccccccEEEcccccHHHHHHHHHccccccEEcccccccccEEccccccccccccEEEccccccccccccccccccccccHHHHcccccccEEEEEEcccccccccccccccccEEEEEEccccccccccccccccEEEEEccccccccccccccccccccEEEccccccccEEcccccccccccccEEEEEcccccEEEccccccccccccccccccEEcccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEcccccHHHccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccEEEEcccccccccccHHHHHccEEEEEccccHHHccccccccccEEEEEEcccccEEEEEccccccccccHHHHHHccccEEEEccccccccccccHHHHHHHHEEEcccccccccHHHHHHHccEEEEcccccHHHccHHHHHHcccEEEEccccccccEccccHHHHHHcccEEEEcccccHHHHccccccccccccHHHHHHcccccEEEEEccccccccccccHHHHHcccEEEEcccccccccccccccEEEEEccccccccccccccccccccEEEEEcccccccEEccHHHccccccccEEEEcccccHHEEEcccccccccccccccHcEEEEcccHHHHHHcccccccccccccEEEEEcccHHHHHcccHHHHHHHHcccEEEEcccHHHHHHHccccccccccccccccEcccccEEEEcccccHHHcccccccccccccEEEEEcccHHHccccccccccccccccHHHHHHccccc
Coil and Loop (DISEMBL)
MHDVVRDVAISIASRVQHVFAVKNvvvpptswpdkdaLKVCTAISlknsniselpqvfecpqlkyfhiandpsrripvhiandpsrripdkffTGMRELRVLDFARmhllplpsslrLFQNLQTLSldycelgdiaivgDLKTLVILTLRGSDMEKLVEEIGQLTHLrlldlsncfnlkvippnvissLSQLEElyigespimwgkvggvdgegrnasldelnnlskltsLEILIedektlprdlSFFKMLQRYSILIgdqwawdspsddisGIFQLTVASganiclngghimqlKGIKELclggsldmksvlygshgegfpqlkhlevvensnllcvvdtvdratapttafpvlESLFLRDLRNLEKIcrgplaaesfCQLRDMRVngcdklknvfplvigrglqqlqFIEVTECQNLDVIFAAergdessnsntQVIELTQLTILelcylpqltsfctgdlhfefpsleklrilecpqvkfkssihestkkvfpnleylsqrvwcd
Flexible Loop (DISEMBL)
MHDVVRDVAISIASRVQHVFAVKNVvvpptswpdkdALKVCTAISLKNSNISELPQVFECPQLKYFhiandpsrripvhiandpsrripdKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRatapttafpvleslflRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAergdessnsnTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSsihestkkvfpnleylsqrvwcd
Low Complexity Region (SEG)
MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHESTKKVFPNLEYLSQRVWCD
Disordered region (IsUnstruct)
****VRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAE*********TQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHESTKKVFPNLEYLSQRVWC*
Disordered Region (DISOPRED)
MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPP**ISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFA**************IELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVK***************LEYLSQRVWCD
Disordered Region (DISEMBL)
MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHESTKKVFPNLEYLSQRVWCD
Disordered Region (DISPRO)
*HDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERG****NSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHESTKKVFPNLEYLSQRV***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHESTKKVFPNLEYLSQRVWCD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	508	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.887	0.490	0.265	6e-19
Q9T048	985	Disease resistance protei	no	no	0.927	0.478	0.261	2e-15
Q42484	909	Disease resistance protei	no	no	0.811	0.453	0.232	8e-15
O82484	892	Putative disease resistan	no	no	0.307	0.174	0.302	7e-06
Q9BTT6	524	Leucine-rich repeat-conta	yes	no	0.421	0.408	0.274	1e-05
Q80VQ1	524	Leucine-rich repeat-conta	yes	no	0.372	0.360	0.286	4e-05
B0W6M9	628	Leucine-rich repeat prote	N/A	no	0.330	0.267	0.260	6e-05
Q9FLB4	874	Putative disease resistan	no	no	0.338	0.196	0.284	6e-05
Q7XA40	992	Putative disease resistan	N/A	no	0.637	0.326	0.246	0.0001
Q9SH22	884	Probable disease resistan	no	no	0.696	0.400	0.236	0.0001

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 213/494 (43%), Gaps = 43/494 (8%)

Query: 1   MHDVVRDVAISIASRVQH-----VFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELP 55
           MHDVVRD AI   S         V A + ++     +P    +     +SL  + +  LP
Sbjct: 431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLI----EFPQDKFVSSVQRVSLMANKLERLP 486

Query: 56  QVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS 115
                      ++       + +   N   + +P+ F      LR+LD + + +  LP S
Sbjct: 487 N----------NVIEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDS 536

Query: 116 LRLFQNLQTLSLDYCE-LGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSN 174
                +L++L L  C+ L ++  +  L  L  L L  S + +L   +  L+ LR + +SN
Sbjct: 537 FSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSN 596

Query: 175 CFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
            + L+ IP   I  LS LE L +  S   WG + G + EG+ A+LDE+  L  L  L I 
Sbjct: 597 TYQLQSIPAGTILQLSSLEVLDMAGSAYSWG-IKGEEREGQ-ATLDEVTCLPHLQFLAIK 654

Query: 235 IEDEKTLPRDL-SFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIM 293
           + D  +   +  S  K L ++  L     +  SP     G   ++  + +N  +  G ++
Sbjct: 655 LLDVLSFSYEFDSLTKRLTKFQFLFSPIRSV-SPPGTGEGCLAISDVNVSNASI--GWLL 711

Query: 294 QLKGIKELCLGGSLD-MKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAF 352
           Q     +L     L+ M   L       F  +K L +    +    +       +    F
Sbjct: 712 QHVTSLDLNYCEGLNGMFENLVTKSKSSFVAMKALSI----HYFPSLSLASGCESQLDLF 767

Query: 353 PVLESLFLRDLRNLEKICR-GPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRG-LQQLQF 410
           P LE L L ++ NLE I            +L+ ++V+GC +LK +F   I  G L  LQ 
Sbjct: 768 PNLEELSLDNV-NLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQE 826

Query: 411 IEVTECQNLDVI--FAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFP 468
           I+V  C  L+ +  F++   D  + S      L +LT+++L YLPQL S C   +  E  
Sbjct: 827 IKVVSCLRLEELFNFSSVPVDFCAES-----LLPKLTVIKLKYLPQLRSLCNDRVVLE-- 879

Query: 469 SLEKLRILECPQVK 482
           SLE L +  C  +K
Sbjct: 880 SLEHLEVESCESLK 893

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 139/532 (26%), Positives = 233/532 (43%), Gaps = 61/532 (11%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTA---ISLKNSNISELPQV 57
           MHDVVRD AI I S  Q      ++V+  T   D    K+  +   +SL N+ +  LP +
Sbjct: 462 MHDVVRDFAIWIMSSSQD--DSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDL 519

Query: 58  FE--CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFA--RMHLLPLP 113
            E  C +     +             N   + +P  F      LR+L+ +  R+   P  
Sbjct: 520 VEEFCVKTSVLLLQ-----------GNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSC 568

Query: 114 SSLRLFQNLQTLSLDYC-ELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDL 172
           S LRLF +L +L L  C +L  +  +  L  L +L L G+ + +    + +L   R LDL
Sbjct: 569 SLLRLF-SLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDL 627

Query: 173 SNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLE 232
           S   +L+ IP  V+S LS LE L +  S   W  V G   +G+ A+++E+  L +L  L 
Sbjct: 628 SRTLHLESIPARVVSRLSSLETLDMTSSHYRWS-VQGETQKGQ-ATVEEIGCLQRLQVLS 685

Query: 233 ILIEDEK-TLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGH 291
           I +      L +  ++ K L+++ +++G ++   +  D      +LT++      ++ G 
Sbjct: 686 IRLHSSPFLLNKRNTWIKRLKKFQLVVGSRYILRTRHDK----RRLTISHLNVSQVSIGW 741

Query: 292 IMQLKGIKEL--CLGGSLDMKSVLYGSHGEGFPQLKHL---EVVENSNLLCVVDTVDRAT 346
           ++       L  C G    MK ++  S  +GF  LK L    V+ N+N    V+ V   T
Sbjct: 742 LLAYTTSLALNHCQGIEAMMKKLV--SDNKGFKNLKSLTIENVIINTN--SWVEMVSTNT 797

Query: 347 APTTA-----FPVLESLFLR--DLRNLEKI-CRGPLAAESFCQLRDMRVNGCDKLKNVFP 398
           +  ++      P LE L LR  DL    ++     L  E+   L+ + +  C KL+ +  
Sbjct: 798 SKQSSDILDLLPNLEELHLRRVDLETFSELQTHLGLKLET---LKIIEITMCRKLRTLLD 854

Query: 399 LVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSF 458
                 +  L+ IE++ C +L  +  A    +    N        L +L+L  LP L S 
Sbjct: 855 KRNFLTIPNLEEIEISYCDSLQNLHEALLYHQPFVPN--------LRVLKLRNLPNLVSI 906

Query: 459 CTGDLHFEFPSLEKLRILECPQVKFK--SSIHESTKKVFPNLEYLSQRVWCD 508
           C     +E   LE++ ++ C Q+     SS     KK+   L +  +  W D
Sbjct: 907 CNWGEVWE--CLEQVEVIHCNQLNCLPISSTCGRIKKIKGELSWWERLEWDD 956

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 119/512 (23%), Positives = 194/512 (37%), Gaps = 100/512 (19%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPP---TSWPDKDALKVCTAISLKNSNISELPQV 57
           MH+VVR  A+ +AS  Q  +    +V P    T  P  +  +    ISL ++ I  LP+ 
Sbjct: 471 MHNVVRSFALWMASE-QGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEK 529

Query: 58  FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR 117
             CP+L    +             N   ++IP  FF  M  LRVLD +   +  +P S++
Sbjct: 530 LICPKLTTLMLQQ-----------NSSLKKIPTGFFMHMPVLRVLDLSFTSITEIPLSIK 578

Query: 118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFN 177
               L  LS+                       G+ +  L +E+G L  L+ LDL     
Sbjct: 579 YLVELYHLSMS----------------------GTKISVLPQELGNLRKLKHLDLQRTQF 616

Query: 178 LKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILI-- 235
           L+ IP + I  LS+LE L +  S   W      + E       +L  L  LT+L I +  
Sbjct: 617 LQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLS 676

Query: 236 -EDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQ 294
            E  KTL    +  K +Q   +            ++ + +    + S  N          
Sbjct: 677 LETLKTLFEFGALHKHIQHLHV------------EECNELLYFNLPSLTN---------- 714

Query: 295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPV 354
                                 HG     L+ L +    +L  +V   D       +  V
Sbjct: 715 ----------------------HGRN---LRRLSIKSCHDLEYLVTPADFENDWLPSLEV 749

Query: 355 LESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVT 414
           L    L  L NL ++    ++ +    +R + ++ C+KLKNV  +   + L +L+ IE+ 
Sbjct: 750 LT---LHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNVSWV---QKLPKLEVIELF 803

Query: 415 ECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLR 474
           +C+ ++ + +    +  S S         L  L    LP+L S       F F  +E L 
Sbjct: 804 DCREIEELIS----EHESPSVEDPTLFPSLKTLRTRDLPELNSILPS--RFSFQKVETLV 857

Query: 475 ILECPQVKFKSSIHESTKKVFPNLEYLSQRVW 506
           I  CP+VK        T+   P + Y  ++ W
Sbjct: 858 ITNCPRVKKLPFQERRTQMNLPTV-YCEEKWW 888

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 29/185 (15%)

Query: 1   MHDVVRDVAISIASR---------VQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNI 51
           MHDVVR++A+   S          VQ    ++ V       P  +       +SL N+ I
Sbjct: 474 MHDVVREMALWTLSDLGKNKERCIVQAGSGLRKV-------PKVEDWGAVRRLSLMNNGI 526

Query: 52  SELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP 111
            E+    ECP+L    +  + S    VHI+ +        FF  MR+L VLD +  H L 
Sbjct: 527 EEISGSPECPELTTLFLQENKS---LVHISGE--------FFRHMRKLVVLDLSENHQLD 575

Query: 112 -LPSSLRLFQNLQTLSLDYCEL-GDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRL 169
            LP  +     L+ L L +  + G  A + DLKTL+ L L        +  I +L+ LR 
Sbjct: 576 GLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMRRLGSIAGISKLSSLRT 635

Query: 170 LDLSN 174
           L L N
Sbjct: 636 LGLRN 640

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BTT6|LRRC1_HUMAN Leucine-rich repeat-containing protein 1 OS=Homo sapiens GN=LRRC1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 34/248 (13%)

Query: 46  LKNSNISELP-QVFECPQLKYFHIANDPSRRIPVHIAN-------DPSR-RIPD--KFFT 94
           L  + + ELP Q F+  +L+   ++++  +R+P  IAN       D SR  IP+  +  +
Sbjct: 43  LDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNEIPEIPESIS 102

Query: 95  GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI-AIVGDLKTLVILTLRGSD 153
             + L+V DF+   L  LP S    QNL  LS++   L  +   +G+L  L  L LR + 
Sbjct: 103 FCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENL 162

Query: 154 MEKLVEEIGQLTHLRLLDLSN--CFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVD 211
           +  L + + QL  L  LDL N   +NL    P  I +L  L++L++             D
Sbjct: 163 LTYLPDSLTQLRRLEELDLGNNEIYNL----PESIGALLHLKDLWL-------------D 205

Query: 212 GEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDI 271
           G   +    E+ NL  L  L++     + LP ++S    L   + L+  Q   ++  D I
Sbjct: 206 GNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSL---TDLVISQNLLETIPDGI 262

Query: 272 SGIFQLTV 279
             + +L++
Sbjct: 263 GKLKKLSI 270

Homo sapiens (taxid: 9606)

>sp|Q80VQ1|LRRC1_MOUSE Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 31/220 (14%)

Query: 46  LKNSNISELP-QVFECPQLKYFHIANDPSRRIPVHIAN-------DPSRR-IPD--KFFT 94
           L  + + ELP Q F+  +L+   ++++  +R+P  IAN       D SR  IP+  +   
Sbjct: 43  LDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESIA 102

Query: 95  GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI-AIVGDLKTLVILTLRGSD 153
             + L+V DF+   L  LP S    QNL  LS++   L  +   +G+L  L  L LR + 
Sbjct: 103 FCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENL 162

Query: 154 MEKLVEEIGQLTHLRLLDLSN--CFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVD 211
           +  L + + QL  L  LDL N   +NL    P  I +L  L++L++             D
Sbjct: 163 LTYLPDSLTQLRRLEELDLGNNEIYNL----PESIGALLHLKDLWL-------------D 205

Query: 212 GEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKML 251
           G   +    E+ NL  L  L++     + LP ++S    L
Sbjct: 206 GNQLSELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSL 245

Mus musculus (taxid: 10090)

>sp|B0W6M9|SUR8_CULQU Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 16/184 (8%)

Query: 2   HDVVRDVAISIASRVQHVFAVKNVVVPPTSWP-DKDALKVCTAISLKNSNISELPQVFEC 60
           H+ +  +   I SR + +  +       TS P D         ++   +++++LP    C
Sbjct: 411 HNQIDKIQYGIFSRAKGLTKLNMKENALTSLPLDIGTWSQMVELNFGTNSLAKLPDDIHC 470

Query: 61  PQ-LKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLF 119
            Q L+   ++N+  +RIP  I N             +++LRVLD     L  LPS + L 
Sbjct: 471 LQNLEILILSNNMLKRIPNTIGN-------------LKKLRVLDLEENRLESLPSEIGLL 517

Query: 120 QNLQTLSLDYCELGDIA-IVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNL 178
            +LQ L L    L  +   +G L  L  L++  ++++ L EEIG L +L  L +++  +L
Sbjct: 518 HDLQKLILQSNALQSLPRTIGHLTNLTYLSVGENNLQYLPEEIGTLENLESLYINDNASL 577

Query: 179 KVIP 182
             +P
Sbjct: 578 VKLP 581

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Culex quinquefasciatus (taxid: 7176)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 21/193 (10%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSW-----PDKDALKVCTAISLKNSNISELP 55
           MHDVVR++A+ I+S        KNV+V   +      P  +  K    +SL  + I E  
Sbjct: 463 MHDVVREMALWISSGCGDQ-KQKNVLVVEANAQLRDIPKIEDQKAVRRMSLIYNQIEEAC 521

Query: 56  QVFECPQLKYFHIANDPSRRI--------PVHIANDPS---RRIPDKFFTGMRELRVLDF 104
           +   CP+L+   + ++  R+I        P+ +  D S     I    F+ +  LR L+ 
Sbjct: 522 ESLHCPKLETLLLRDNRLRKISREFLSHVPILMVLDLSLNPNLIELPSFSPLYSLRFLNL 581

Query: 105 ARMHLLPLPSSLRLFQNLQTLSLDYCE-LGDIAIVGDLKTLVILTLRGSDM---EKLVEE 160
           +   +  LP  L   +NL  L+L++   L  I  + DL  L +L L  S +   +KLV +
Sbjct: 582 SCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYEIHDLPNLEVLKLYASGIDITDKLVRQ 641

Query: 161 IGQLTHLRLLDLS 173
           I  + HL LL ++
Sbjct: 642 IQAMKHLYLLTIT 654

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 160/386 (41%), Gaps = 62/386 (16%)

Query: 94  TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI-AIVGDLKTLVILTLRGS 152
           T  +++  + F+ +     PS  + F +L+ L+L   E   + + VGDL  L  L L G+
Sbjct: 509 TNYKDMMSIGFSEVVSSYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGN 568

Query: 153 DMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI--MWGKVG-- 208
            +  L + + +L +L+ LDL NC +L  +P    S L  L  L +   P+  M  ++G  
Sbjct: 569 KICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQT-SKLCSLRNLVLDHCPLTSMPPRIGLL 627

Query: 209 --------GVDGEGRNASLDELNNLS-----KLTSLEILIEDEKTLPRDLSFFKMLQRYS 255
                    V GE +   L EL NL+      +T LE +  D +    +LS    L   S
Sbjct: 628 TCLKTLGYFVVGERKGYQLGELRNLNLRGAISITHLERVKNDMEAKEANLSAKANLHSLS 687

Query: 256 ILIGDQWAWDSP----SDDIS---------GIFQLTVASGANICL-NGGHIMQLKGIKEL 301
           +      +WD P    S+++           +  L +      CL +  +   LK +  +
Sbjct: 688 M------SWDRPNRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSI 741

Query: 302 CLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLR 361
            + G  +   +     GE  P L+ LE+ + S  +  V+  D        FP L  L + 
Sbjct: 742 LISGCENCSCL--PPFGE-LPCLESLELQDGSVEVEYVE--DSGFLTRRRFPSLRKLHIG 796

Query: 362 DLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDV 421
              NL+ + R    AE F  L +M+++ C       P+ +        F  ++  + L++
Sbjct: 797 GFCNLKGLQRMK-GAEQFPVLEEMKISDC-------PMFV--------FPTLSSVKKLEI 840

Query: 422 IFAAERGDESSNSNTQVIELTQLTIL 447
              A+ G  SS SN     LT L I 
Sbjct: 841 WGEADAGGLSSISNLST--LTSLKIF 864

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 164/423 (38%), Gaps = 69/423 (16%)

Query: 1   MHDVVRDVAISIASR--VQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVF 58
           MHDVVR++A+ IAS   +Q    +    V     P      V   +SL  + I  L   +
Sbjct: 475 MHDVVREMALWIASELGIQKEAFIVRAGVGVREIPKIKNWNVVRRMSLMENKIHHLVGSY 534

Query: 59  ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFAR-MHLLPLPSSLR 117
           EC +L    +       I   +     + I  +FF  M +L VLD +    L  LP  + 
Sbjct: 535 ECMELTTLLLGKREYGSIRSQL-----KTISSEFFNCMPKLAVLDLSHNKSLFELPEEIS 589

Query: 118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFN 177
              +L+ L+L Y E+                   S + K ++E+ ++ HL L      + 
Sbjct: 590 NLVSLKYLNLLYTEI-------------------SHLPKGIQELKKIIHLNLE-----YT 625

Query: 178 LKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIE- 236
            K+     ISSL  L+ L +  S + W              L+ +  L  L  LEIL   
Sbjct: 626 RKLESITGISSLHNLKVLKLFRSRLPW-------------DLNTVKELETLEHLEILTTT 672

Query: 237 -DEK-----TLPRDLSFFKMLQRYSILIGD---QWAWDSPSDDISGIFQLTVASGANICL 287
            D +     +  R LS  ++L+ Y   +          S S D    FQ+   S + I +
Sbjct: 673 IDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSCSISEIKM 732

Query: 288 NG-GHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRAT 346
            G  + + L  +      G  ++  +++       P+++ L V    +L  +++      
Sbjct: 733 GGICNFLSLVDVNIFNCEGLRELTFLIFA------PKIRSLSVWHAKDLEDIINEEKACE 786

Query: 347 APTTA---FPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGR 403
              +    FP L  L L DL  L+KI   PL    F  L ++ +  C  L+ + PL    
Sbjct: 787 GEESGILPFPELNFLTLHDLPKLKKIYWRPLP---FLCLEEINIRECPNLRKL-PLDSTS 842

Query: 404 GLQ 406
           G Q
Sbjct: 843 GKQ 845

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
255563252	1603	Disease resistance protein RPS5, putativ	0.864	0.273	0.445	8e-91
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.954	0.368	0.398	4e-86
255574526	1232	Disease resistance protein RFL1, putativ	0.862	0.355	0.443	2e-84
357439285	1531	Cc-nbs resistance protein [Medicago trun	0.874	0.290	0.421	1e-83
224125154	949	cc-nbs-lrr resistance protein [Populus t	0.860	0.460	0.423	4e-83
358344271	1587	Cc-nbs-lrr resistance protein [Medicago	0.874	0.279	0.419	8e-83
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.938	0.355	0.404	3e-81
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.864	0.178	0.417	3e-81
359488027	1520	PREDICTED: disease resistance protein At	0.854	0.285	0.416	5e-81
296087872	1152	unnamed protein product [Vitis vinifera]	0.854	0.376	0.416	6e-81

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 205/460 (44%), Positives = 285/460 (61%), Gaps = 21/460 (4%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFEC 60
           +HDVVRDVAISIASR+QH+F V+N  +    WP+KD  K CT ISL  ++I  LP+V EC
Sbjct: 466 IHDVVRDVAISIASRMQHLFTVRNGALL-KEWPNKDVCKSCTRISLPYNDIHGLPEVLEC 524

Query: 61  PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120
           P+L+ F +              D S ++PD  F   + LRVL+F  MH   LP SL   +
Sbjct: 525 PELELFLL-----------FTQDISLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLK 573

Query: 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV 180
           NL TL LD+C L D+AI+G+L  L IL+ + SD+ +L  EI QLT L+ LDLS+C  LKV
Sbjct: 574 NLFTLCLDWCALRDVAIIGELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKV 633

Query: 181 IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240
           IP  +IS L+QLEELY+  S  +W  V G++ + RNASL EL  L  LT+LEI + D K 
Sbjct: 634 IPAKIISELTQLEELYMNNSFDLW-DVQGINNQ-RNASLAELECLPYLTTLEICVLDAKI 691

Query: 241 LPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKE 300
           LP+DL FF+ L+R+ I IGD W+  +     S   +L + + ++I L  G  + L+  ++
Sbjct: 692 LPKDL-FFRKLERFRIFIGDVWS-GTGDYGTSRTLKLKLNT-SSIHLEHGLSILLEVTED 748

Query: 301 LCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFL 360
           L L     +KSVLY    +GF QLKHL+V  +  +  ++D   R  +P  AFP+LESL+L
Sbjct: 749 LYLAEVKGIKSVLYDLDSQGFTQLKHLDVQNDPEIQYIIDPNRR--SPCNAFPILESLYL 806

Query: 361 RDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLD 420
            +L +LEKIC G L   SF +LR + V  CD+LKN+F   + R L QLQ ++V +C NL+
Sbjct: 807 DNLMSLEKICCGKLTTGSFSKLRSLTVVKCDRLKNLFSFSMMRCLLQLQQMKVVDCANLE 866

Query: 421 VIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCT 460
            I A   G E ++++ + ++LTQL  L L  LP   SFC+
Sbjct: 867 EIVAC--GSEDTDNDYEAVKLTQLCSLTLKRLPMFKSFCS 904

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 209/525 (39%), Positives = 300/525 (57%), Gaps = 40/525 (7%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFEC 60
           MHDVV   AIS+A R  HV  V +       WP  D L+  TAISL    I +LP + EC
Sbjct: 460 MHDVVHSFAISVALRDHHVLTVADEF---KEWPANDVLQQYTAISLPFRKIPDLPAILEC 516

Query: 61  PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120
           P L  F + N            DPS +IPD FF  M+EL++LD   ++L PLPSSL+  +
Sbjct: 517 PNLNSFLLLN-----------KDPSLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLE 565

Query: 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV 180
           NLQTL LD+C L DI+I+G+L  L +L+L  S++ +L  EIG++T L+LLDLSNC  L+V
Sbjct: 566 NLQTLCLDHCVLEDISIIGELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEV 625

Query: 181 IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240
           I PN +SSL++LE+LY+G S + W +  G   +  NA L EL +LS L++L + I D   
Sbjct: 626 ISPNALSSLTRLEDLYMGNSFVKW-ETEGSSSQRNNACLSELKHLSNLSTLHMQITDADN 684

Query: 241 LPRDL-SFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIK 299
           +P+DL S F+ L+R+ I IGD W W S  D  S   +L + +   I L  G    LK  +
Sbjct: 685 MPKDLFSSFQNLERFRIFIGDGWDW-SVKDATSRTLKLKLNTV--IQLEEGVNTLLKITE 741

Query: 300 ELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLF 359
           EL L     +KS+L    GEGFPQL+HL V     +  +++++     P TAF  L+SLF
Sbjct: 742 ELHLQELNGVKSILNDLDGEGFPQLRHLHVQNCPGVQYIINSI--RMGPRTAFLNLDSLF 799

Query: 360 LRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNL 419
           L +L NLEKIC G L AES   LR ++V  C +LKN+F + + R L +L+ I + +C+ +
Sbjct: 800 LENLDNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIM 859

Query: 420 DVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECP 479
           + + A E  +++++    +IE TQL  L L  LPQ TSF +     E    ++ + L   
Sbjct: 860 EEVVAEESENDAADGEP-IIEFTQLRRLTLQCLPQFTSFHSN--VEESSDSQRRQKLLAS 916

Query: 480 QVKFKSSIHE----------STKKVFPNLEYLS------QRVWCD 508
           + + K  +            +TK +FPNLE L       +++W D
Sbjct: 917 EARSKEIVAGNELGTSMSLFNTKILFPNLEDLKLSSIKVEKIWHD 961

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 204/460 (44%), Positives = 280/460 (60%), Gaps = 22/460 (4%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFEC 60
           +HD+++D A+SIA R Q VF + N +     WPD+DALK CT ISL   N+ +LP+V E 
Sbjct: 454 IHDLIQDFAVSIAYREQQVFTINNYIRLEV-WPDEDALKSCTRISLPCLNVVKLPEVLES 512

Query: 61  PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120
           P L++  ++ +           +PS RIP  FF G+  L+VLDF  M    LP SL   +
Sbjct: 513 PNLEFLLLSTE-----------EPSLRIPGSFFQGIPILKVLDFCGMSFSSLPPSLGCLE 561

Query: 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV 180
           +L+TL LD+C L DIAI+G+LK L ILT   SD+ +L  EIG+L+ L+LLDLS+C  L V
Sbjct: 562 HLRTLCLDHCLLHDIAIIGELKKLEILTFAHSDIVELPREIGELSRLKLLDLSHCSKLNV 621

Query: 181 IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240
            P NV+S L  LEELY+  S + W K+ G+  +  NASLDEL  LS LTSLEI I D + 
Sbjct: 622 FPANVLSRLCLLEELYMANSFVRW-KIEGLMNQS-NASLDELVLLSHLTSLEIQILDARI 679

Query: 241 LPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKE 300
           LPRDL F K LQRY ILIGD+W W+   D+ S + +L + +  +          L+G  +
Sbjct: 680 LPRDL-FTKKLQRYKILIGDEWDWNG-HDETSRVLKLKLNTSIHSEYEVNQF--LEGTDD 735

Query: 301 LCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFL 360
           L L  +  + S+LY  + EGFPQLK L V     + C+V+  +  + PT AFP+L+SL L
Sbjct: 736 LSLADARGVNSILYNLNSEGFPQLKRLIVQNCPEIHCLVNASE--SVPTVAFPLLKSLLL 793

Query: 361 RDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLD 420
            +L NLEK C G L   SF +LR ++V  C++LKN+    + R L QLQ +EV +C+N+ 
Sbjct: 794 ENLMNLEKFCHGELVGGSFSELRSIKVRSCNELKNLLSFSMVRFLMQLQEMEVIDCRNVM 853

Query: 421 VIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCT 460
            IF  E  D  S+   +   LT+L  L L  LP+L SFC+
Sbjct: 854 EIFKYEGAD--SDIEDKAAALTRLRSLTLERLPKLNSFCS 891

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439285|ref|XP_003589919.1| Cc-nbs resistance protein [Medicago truncatula] gi|355478967|gb|AES60170.1| Cc-nbs resistance protein [Medicago truncatula]

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 196/465 (42%), Positives = 261/465 (56%), Gaps = 21/465 (4%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFEC 60
           MHD VRD AISIA R +H+F  K        WP  D LK CT I LK  +  ELPQ  +C
Sbjct: 465 MHDFVRDFAISIARRDKHIFLRKQ---SDEEWPTNDFLKRCTQIFLKRCHTLELPQTIDC 521

Query: 61  PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120
           P +K F++             N  S +IPD FF GMR LRVLD  R++LL LP+S R   
Sbjct: 522 PNVKLFYLG-----------CNISSFKIPDAFFEGMRSLRVLDLTRLNLLSLPTSFRFLT 570

Query: 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV 180
            LQTL LDYC L ++  +  L+ L IL L  S M KL  EIG+L  LR+LDLS+   ++V
Sbjct: 571 ELQTLCLDYCILENMDAIEALQNLEILRLWKSSMIKLPREIGRLIRLRMLDLSHS-GIEV 629

Query: 181 IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240
           +PPN+ISSL++LEELY+G + I W  V        NASL EL  L KLT+LE+ I +   
Sbjct: 630 VPPNIISSLTKLEELYMGNTSINWEDVSST-FHNENASLAELQKLPKLTALELQIRETWM 688

Query: 241 LPRDLSF-FKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIK 299
           LPRDL   F+ L+RY I IGD W W    D       L +  G NI L  G    +KG++
Sbjct: 689 LPRDLQLVFEKLERYKIAIGDVWDWSDIKDGTLNTLMLKL--GTNIHLEHGIKALIKGVE 746

Query: 300 ELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLF 359
            L L     +++VL   + EGF  LKHL V  N+NL  +VD  +R      +FP+LE+L 
Sbjct: 747 NLYLDDVDGIQNVLPHLNREGFTLLKHLHVQNNTNLNHIVDNKER-NQIHASFPILETLV 805

Query: 360 LRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNL 419
           L +LRNLE IC G  +  SF  L  ++V  C +LK +F   + +GL  L  IEV EC ++
Sbjct: 806 LLNLRNLEHICHGQPSVASFGSLSVIKVKNCVQLKYLFSFTMVKGLSHLSKIEVCECNSM 865

Query: 420 -DVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDL 463
            +++F       +++   + IE  QL  L L +L  L +F +  L
Sbjct: 866 KEIVFRDNDSSANNDITDEKIEFLQLRSLTLEHLKTLDNFASDYL 910

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125154|ref|XP_002319513.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857889|gb|EEE95436.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 195/460 (42%), Positives = 275/460 (59%), Gaps = 23/460 (5%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFEC 60
           MHDVV   A  +ASR  HVF + +  V    WPD    + C+AISL    I  LP+V   
Sbjct: 464 MHDVVHGFAAFVASRDHHVFTLASDTVL-KEWPDMP--EQCSAISLPRCKIPGLPEVLNF 520

Query: 61  PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120
           P+ + F + N+           DPS +IPD  F G + L+++D   + L  LPSSL+  +
Sbjct: 521 PKAESFILYNE-----------DPSLKIPDSLFKGTKTLQLVDMTAVQLPTLPSSLQFLE 569

Query: 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV 180
            LQTL LD C L DIA++G+LK L +L+L  S++ +L  EIGQLT L+LLDLSN   L++
Sbjct: 570 KLQTLCLDSCGLKDIAMIGELKMLKVLSLIDSNIVRLPREIGQLTRLQLLDLSNNPRLEM 629

Query: 181 IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240
           IPPNV+S L+QLE+LY+  S + W ++ G+D +  NASL EL  L  L++L + I D   
Sbjct: 630 IPPNVLSCLTQLEDLYMENSFLQW-RIEGLDSQRNNASLAELKYLPNLSTLHLHITDPMI 688

Query: 241 LPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKE 300
           LPRD  F K L+R+ ILIG+ W W S   + S   +L ++  A+I    G  + LK  ++
Sbjct: 689 LPRDF-FSKKLERFKILIGEGWDW-SRKRETSTTMKLKIS--ASIQSEEGIQLLLKRTED 744

Query: 301 LCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFL 360
           L L G   +KSV Y   G+GFP+LKHL +  +  +  +VD+     +P+ AFP+LESL L
Sbjct: 745 LHLDGLKGVKSVSYELDGQGFPRLKHLHIQNSLEIRYIVDST--MLSPSIAFPLLESLSL 802

Query: 361 RDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLD 420
            +L  LEKIC     AESF  LR ++V  C  LKN+F L + RGL QL+ I + +C+ ++
Sbjct: 803 DNLNKLEKICNSQPVAESFSNLRILKVESCPMLKNLFSLHMERGLLQLEHISIIDCKIME 862

Query: 421 VIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCT 460
           VI A E G ++     + I+LTQL  L L YLP+ TS  +
Sbjct: 863 VIVAEESGGQADED--EAIKLTQLRTLTLEYLPEFTSVSS 900

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344271|ref|XP_003636214.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355502149|gb|AES83352.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 195/465 (41%), Positives = 261/465 (56%), Gaps = 21/465 (4%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFEC 60
           MHD VRD AISIA R +HVF  K        WP KD  K CT I L   ++ E PQ+ +C
Sbjct: 464 MHDFVRDFAISIACRDKHVFLRKQ---SDEKWPTKDFFKRCTQIVLDRCDMHEFPQMIDC 520

Query: 61  PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120
           P +K F++           I+ + S  IPD FF GMR LRVLD  R +LL LP+S R   
Sbjct: 521 PNIKLFYL-----------ISKNQSLEIPDTFFEGMRSLRVLDLTRWNLLSLPTSFRFLT 569

Query: 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV 180
            LQTL LDYC L ++  +  L+ L IL L  S M KL  EIG+L  LR+LDLS+   ++V
Sbjct: 570 ELQTLCLDYCILENMDAIEALQNLEILRLWKSSMIKLPREIGRLIRLRMLDLSHS-GIEV 628

Query: 181 IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240
           +PPN+ISSL++LEELY+G + I W  V        NASL EL  L KLT+LE+ I +   
Sbjct: 629 VPPNIISSLTKLEELYMGNTSINWEDVSST-VHNENASLAELRKLPKLTALELQIRETWM 687

Query: 241 LPRDLSF-FKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIK 299
           LPRDL   F+ L+RY I IGD W W    D       L +  G NI L  G    +KG++
Sbjct: 688 LPRDLQLVFEKLERYKIAIGDVWDWSDIKDGTLKTLMLKL--GTNIHLEHGIKALIKGVE 745

Query: 300 ELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLF 359
            L L     +++VL   + EGF  LKHL V  N+NL  +VD  +R      +FP+LE+L 
Sbjct: 746 NLYLDDVDGIQNVLPHLNREGFTLLKHLHVQNNTNLNHIVDNKER-NQIHASFPILETLV 804

Query: 360 LRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNL 419
           L +LRNLE IC G  +  SF  L  ++V  C +LK +F   + +GL  L  IEV EC ++
Sbjct: 805 LLNLRNLEHICHGQPSVASFGSLSVIKVKNCVQLKYLFSFTMVKGLSHLCKIEVCECNSM 864

Query: 420 -DVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDL 463
            +++F       +++   + IE  QL  L L +L  L +F +  L
Sbjct: 865 KEIVFRDNNSSANNDITDEKIEFLQLRSLTLEHLKTLDNFASDYL 909

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 212/524 (40%), Positives = 294/524 (56%), Gaps = 47/524 (8%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFEC 60
           MHDVV+  A S+ASR  HV  V +       WP  D L+  TAISL    I +LP + EC
Sbjct: 460 MHDVVQSFAFSVASRDHHVLIVADEF---KEWPTSDVLQQYTAISLPYRKIPDLPAILEC 516

Query: 61  PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120
           P L  F + N            DPS +IPD FF  M+EL+VLD  R++L PLPSSL+  +
Sbjct: 517 PNLNSFILLN-----------KDPSLQIPDNFFREMKELKVLDLTRVNLSPLPSSLQFLE 565

Query: 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV 180
           NLQTL LD C L DI+IVG+LK L +L+L  SD+  L  EIG+LT L LLDLSNC  L+V
Sbjct: 566 NLQTLCLDGCVLEDISIVGELKKLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEV 625

Query: 181 IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240
           I PNV+SSL++LEELY+G S + W +  G   +  NA L EL  LS L +L + I D   
Sbjct: 626 ISPNVLSSLTRLEELYMGNSFVKW-ETEGSSSQRNNACLSELKRLSNLITLHMQITDADN 684

Query: 241 LPRDLSF-FKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQ----- 294
           + +DLSF F+ L+R+ I IGD W W            +  A+   + L    ++Q     
Sbjct: 685 MLKDLSFLFQKLERFRIFIGDGWDW-----------SVKYATSRTLKLKLNTVIQLEEWV 733

Query: 295 ---LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTA 351
              LK  +EL L     +KS+L    GE FP+LKHL V     +  +++++     P TA
Sbjct: 734 NTLLKSTEELHLQELKGVKSILNDLDGEDFPRLKHLHVQNCPGVQYIINSI--RMGPRTA 791

Query: 352 FPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFI 411
           F  L+SLFL +L NLEKIC G L AES  +LR ++V  C +LKN+F + + R L +L+ I
Sbjct: 792 FLNLDSLFLENLDNLEKICHGQLMAESLGKLRILKVESCHRLKNLFSVSMARRLVRLEEI 851

Query: 412 EVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPS-L 470
            + +C+ ++ + A E   E+  ++ + IE  QL  L L  LPQ TSF +        S +
Sbjct: 852 TIIDCKIMEEVVAEE--SENDTADGEPIEFAQLRRLTLQCLPQFTSFHSNRRQKLLASDV 909

Query: 471 EKLRILECPQVKFKSSIHESTKKVFPNLEYLS------QRVWCD 508
               I+   ++    S+  +TK +FPNLE L       +++W D
Sbjct: 910 RSKEIVAGNELGTSMSLF-NTKILFPNLEDLKLSSIKVEKIWHD 952

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 192/460 (41%), Positives = 276/460 (60%), Gaps = 21/460 (4%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFEC 60
           MHDVV + A  +ASR  HVFAV         WP+KD L+  TAISL +  I +LP+VFEC
Sbjct: 415 MHDVVHNFATLVASRDHHVFAVA-CDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFEC 473

Query: 61  PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120
           P L+ F + N            D S +IPD FF+ M++L+++D + +HL P+P SL+  +
Sbjct: 474 PDLQSFLLYN-----------KDSSLKIPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLE 522

Query: 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV 180
           NLQTL LD C L DIA +G+LK L +L+  GS M +L  E+G+LT L+LLDLS C  L+V
Sbjct: 523 NLQTLCLDRCTLEDIAAIGELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEV 582

Query: 181 IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240
           IP  V+S L++LEELY+G S + W +    DG+  NASLDEL  L  L +LE+ I + + 
Sbjct: 583 IPKGVLSCLTKLEELYMGNSFVQW-ESEEHDGDRNNASLDELKLLPNLVTLELHIINAEI 641

Query: 241 LPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKE 300
           LPRD+ F + L  Y + IG++W+W     + S   +L + S   I       + L   ++
Sbjct: 642 LPRDV-FSEKLDLYKVFIGEEWSWFGKY-EASRTLKLKLNSSIEI---EKVKVLLMTTED 696

Query: 301 LCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFL 360
           L L     +++VLY   G+GFPQLKHL +  +S +  +VD +        AFP LESL +
Sbjct: 697 LYLDELEGVRNVLYELDGQGFPQLKHLHIQNSSEIQYIVDCLSMGNH-YIAFPRLESLLV 755

Query: 361 RDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLD 420
            +L NL +IC G L + SF +LR ++V  C+ LKN+F   + RGL QL+ I+V+ C  ++
Sbjct: 756 DNLNNLGQICYGQLMSGSFSKLRKLKVEHCNALKNLFYFSMFRGLVQLEEIDVSSCNIME 815

Query: 421 VIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCT 460
            I   E  D+S     ++I+  +L  L L YLP+ TSFC+
Sbjct: 816 EIVVEEIEDDSGRD--EIIKPIRLRTLTLEYLPRFTSFCS 853

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 192/461 (41%), Positives = 273/461 (59%), Gaps = 27/461 (5%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFEC 60
           MHDVVRDVAI+I S+V  VF+++   +    WP  D L+ CT +SL  ++I ELP    C
Sbjct: 467 MHDVVRDVAIAIVSKVHRVFSLREDEL--VEWPKMDELQTCTKMSLAYNDICELPIELVC 524

Query: 61  PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120
           P+L+ F   +     I  H+      +IP+ FF  M++L+VLD + MH   LPSSLR   
Sbjct: 525 PELELFLFYHT----IDYHL------KIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLT 574

Query: 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV 180
           NL+TLSL++C+LGDI+I+ +LK L   +  GS++EKL  EI QLTHLRL DL +C  L+ 
Sbjct: 575 NLRTLSLNWCKLGDISIIVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLRE 634

Query: 181 IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240
           IPPNVISSLS+LE L +  S  +W     V+G+  NAS+ E   L  LT+L+I I D + 
Sbjct: 635 IPPNVISSLSKLENLCMENSFTLW----EVEGKS-NASIAEFKYLPYLTTLDIQIPDAEL 689

Query: 241 LPRDLSFFKMLQRYSILIGDQWAWDS--PSDDISGIFQLTVASGANICLNGGHIMQLKGI 298
           L  D+ F K++ RY I IGD W+WD   P+     + +L  +    + L  G  + LKG 
Sbjct: 690 LLTDVLFEKLI-RYRIFIGDVWSWDKNCPTTKTLKLNKLDTS----LRLADGISLLLKGA 744

Query: 299 KELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESL 358
           K+L L       +V      EGF QLK L V  +  +  +++++D   +P  AFPVLESL
Sbjct: 745 KDLHLRELSGAANVFPKLDREGFLQLKCLHVERSPEMQHIMNSMDPILSP-CAFPVLESL 803

Query: 359 FLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQN 418
           FL  L NL+++C G L   SF  LR ++V  CD LK +F + + RGL +L+ IE+T C+N
Sbjct: 804 FLNQLINLQEVCHGQLLVGSFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCKN 863

Query: 419 LDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFC 459
           +  + A  +G E  +     I   +L  L L +LP+L +FC
Sbjct: 864 MYKMVA--QGKEDGDDAVDAILFAELRYLTLQHLPKLRNFC 902

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 192/461 (41%), Positives = 273/461 (59%), Gaps = 27/461 (5%)

Query: 1   MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFEC 60
           MHDVVRDVAI+I S+V  VF+++   +    WP  D L+ CT +SL  ++I ELP    C
Sbjct: 287 MHDVVRDVAIAIVSKVHRVFSLREDEL--VEWPKMDELQTCTKMSLAYNDICELPIELVC 344

Query: 61  PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120
           P+L+ F   +     I  H+      +IP+ FF  M++L+VLD + MH   LPSSLR   
Sbjct: 345 PELELFLFYHT----IDYHL------KIPETFFEEMKKLKVLDLSNMHFTSLPSSLRCLT 394

Query: 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV 180
           NL+TLSL++C+LGDI+I+ +LK L   +  GS++EKL  EI QLTHLRL DL +C  L+ 
Sbjct: 395 NLRTLSLNWCKLGDISIIVELKKLEFFSFMGSNIEKLPREIAQLTHLRLFDLRDCSKLRE 454

Query: 181 IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240
           IPPNVISSLS+LE L +  S  +W     V+G+  NAS+ E   L  LT+L+I I D + 
Sbjct: 455 IPPNVISSLSKLENLCMENSFTLW----EVEGKS-NASIAEFKYLPYLTTLDIQIPDAEL 509

Query: 241 LPRDLSFFKMLQRYSILIGDQWAWDS--PSDDISGIFQLTVASGANICLNGGHIMQLKGI 298
           L  D+ F K++ RY I IGD W+WD   P+     + +L  +    + L  G  + LKG 
Sbjct: 510 LLTDVLFEKLI-RYRIFIGDVWSWDKNCPTTKTLKLNKLDTS----LRLADGISLLLKGA 564

Query: 299 KELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESL 358
           K+L L       +V      EGF QLK L V  +  +  +++++D   +P  AFPVLESL
Sbjct: 565 KDLHLRELSGAANVFPKLDREGFLQLKCLHVERSPEMQHIMNSMDPILSP-CAFPVLESL 623

Query: 359 FLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQN 418
           FL  L NL+++C G L   SF  LR ++V  CD LK +F + + RGL +L+ IE+T C+N
Sbjct: 624 FLNQLINLQEVCHGQLLVGSFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIEITRCKN 683

Query: 419 LDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFC 459
           +  + A  +G E  +     I   +L  L L +LP+L +FC
Sbjct: 684 MYKMVA--QGKEDGDDAVDAILFAELRYLTLQHLPKLRNFC 722

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.929	0.513	0.268	4.1e-22
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.931	0.480	0.262	1.3e-18
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.531	0.297	0.264	7.9e-14
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.362	0.206	0.299	6.5e-09
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.358	0.205	0.290	3e-08
UNIPROTKB|Q9BTT6	524	LRRC1 "Leucine-rich repeat-con	0.411	0.398	0.308	2.1e-07
MGI|MGI:2442313	524	Lrrc1 "leucine rich repeat con	0.411	0.398	0.308	3.5e-07
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.381	0.219	0.253	1.7e-06
UNIPROTKB|E1BS02	277	RSU1 "Uncharacterized protein"	0.340	0.624	0.260	1.2e-05
TAIR|locus:2171579	843	AT5G47250 [Arabidopsis thalian	0.437	0.263	0.257	1.5e-05

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 4.1e-22, P = 4.1e-22
 Identities = 139/517 (26%), Positives = 231/517 (44%)

Query:     1 MHDVVRDVAI-SIASRVQ--H--VFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELP 55
             MHDVVRD AI  ++S+ +  H  V A + ++  P    DK    V   +SL  + +  LP
Sbjct:   431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQ---DKFVSSV-QRVSLMANKLERLP 486

Query:    56 QVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS 115
                        ++       + +   N   + +P+ F      LR+LD + + +  LP S
Sbjct:   487 N----------NVIEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDS 536

Query:   116 LRLFQNLQTLSLDYCE-LGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSN 174
                  +L++L L  C+ L ++  +  L  L  L L  S + +L   +  L+ LR + +SN
Sbjct:   537 FSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSN 596

Query:   175 CFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
              + L+ IP   I  LS LE L +  S   WG + G + EG+ A+LDE+  L  L  L I 
Sbjct:   597 TYQLQSIPAGTILQLSSLEVLDMAGSAYSWG-IKGEEREGQ-ATLDEVTCLPHLQFLAIK 654

Query:   235 IEDEKTLPRDL-SFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIM 293
             + D  +   +  S  K L ++  L     +   P     G   ++  + +N  +  G ++
Sbjct:   655 LLDVLSFSYEFDSLTKRLTKFQFLFSPIRSVSPPGTG-EGCLAISDVNVSNASI--GWLL 711

Query:   294 QLKGIKEL--CLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTA 351
             Q     +L  C G +   ++++  S    F  +K L +    +L           +    
Sbjct:   712 QHVTSLDLNYCEGLNGMFENLVTKSKSS-FVAMKALSIHYFPSL----SLASGCESQLDL 766

Query:   352 FPVLESLFLRDLRNLEKI--CRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRG-LQQL 408
             FP LE L L ++ NLE I    G L      +L+ ++V+GC +LK +F   I  G L  L
Sbjct:   767 FPNLEELSLDNV-NLESIGELNGFLGMR-LQKLKLLQVSGCRQLKRLFSDQILAGTLPNL 824

Query:   409 QFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFP 468
             Q I+V  C  L+ +F          + +    L +LT+++L YLPQL S C   +  E  
Sbjct:   825 QEIKVVSCLRLEELFNFSSVPVDFCAESL---LPKLTVIKLKYLPQLRSLCNDRVVLE-- 879

Query:   469 SLEKLRILECPQVKFKSSIHESTKKVFPNL--EYLSQ 503
             SLE L +  C  +K    +  +T  +   +  EY+S+
Sbjct:   880 SLEHLEVESCESLKNLPFVPGNTGMINEQMAWEYMSR 916

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 1.3e-18, P = 1.3e-18
 Identities = 139/530 (26%), Positives = 237/530 (44%)

Query:     1 MHDVVRDVAISIASRVQHVFAVKNVVVPPTSWPD--KDALKVCTA-ISLKNSNISELPQV 57
             MHDVVRD AI I S  Q      ++V+  T   D  +D L      +SL N+ +  LP +
Sbjct:   462 MHDVVRDFAIWIMSSSQD--DSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDL 519

Query:    58 FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFA--RMHLLPLPSS 115
              E      F +       + +   N   + +P  F      LR+L+ +  R+   P  S 
Sbjct:   520 VE-----EFCVKTS----VLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSL 570

Query:   116 LRLFQNLQTLSLDYC-ELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSN 174
             LRLF +L +L L  C +L  +  +  L  L +L L G+ + +    + +L   R LDLS 
Sbjct:   571 LRLF-SLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSR 629

Query:   175 CFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
               +L+ IP  V+S LS LE L +  S   W  V G   +G+ A+++E+  L +L  L I 
Sbjct:   630 TLHLESIPARVVSRLSSLETLDMTSSHYRWS-VQGETQKGQ-ATVEEIGCLQRLQVLSIR 687

Query:   235 IEDEK-TLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANIC-LNGGHI 292
             +      L +  ++ K L+++ +++G ++   +  D      +LT+ S  N+  ++ G +
Sbjct:   688 LHSSPFLLNKRNTWIKRLKKFQLVVGSRYILRTRHDKR----RLTI-SHLNVSQVSIGWL 742

Query:   293 MQLKGIKEL--CLGGSLDMKSVLYGSHGEGFPQLKHL---EVVENSNL---LCVVDTVDR 344
             +       L  C G    MK ++  S  +GF  LK L    V+ N+N    +   +T  +
Sbjct:   743 LAYTTSLALNHCQGIEAMMKKLV--SDNKGFKNLKSLTIENVIINTNSWVEMVSTNTSKQ 800

Query:   345 ATAPTTAFPVLESLFLR--DLRNLEKI-CRGPLAAESFCQLRDMRVNGCDKLKNVFPLVI 401
             ++      P LE L LR  DL    ++     L  E+   L+ + +  C KL+ +     
Sbjct:   801 SSDILDLLPNLEELHLRRVDLETFSELQTHLGLKLET---LKIIEITMCRKLRTLLDKRN 857

Query:   402 GRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCT- 460
                +  L+ IE++ C +L  +  A    +    N +V++L  L        P L S C  
Sbjct:   858 FLTIPNLEEIEISYCDSLQNLHEALLYHQPFVPNLRVLKLRNL--------PNLVSICNW 909

Query:   461 GDLHFEFPSLEKLRILECPQVKFK--SSIHESTKKVFPNLEYLSQRVWCD 508
             G++   +  LE++ ++ C Q+     SS     KK+   L +  +  W D
Sbjct:   910 GEV---WECLEQVEVIHCNQLNCLPISSTCGRIKKIKGELSWWERLEWDD 956

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
 Identities = 81/306 (26%), Positives = 132/306 (43%)

Query:   221 ELNNLSKLTSLEIL-IEDEKTLPRD----LSFFKMLQRYSILIGDQWAWDSPSDDIS--- 272
             EL NL KL  L++   +  +T+PRD    LS  ++L  Y    G  W   S  +D +   
Sbjct:   599 ELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAG--WELQSFGEDEAEEL 656

Query:   273 GIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEV--V 330
             G   L      N+   G  ++ L+ +K L   G+L  K + +  H E   +L +  +  +
Sbjct:   657 GFADLEYLE--NLTTLGITVLSLETLKTLFEFGALH-KHIQH-LHVEECNELLYFNLPSL 712

Query:   331 ENS--NL--LCVVDTVDRATAPTTA------FPVLESLFLRDLRNLEKICRGPLAAESFC 380
              N   NL  L +    D     T A       P LE L L  L NL ++    ++ +   
Sbjct:   713 TNHGRNLRRLSIKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQDCLR 772

Query:   381 QLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIE 440
              +R + ++ C+KLKNV  +   + L +L+ IE+ +C+ ++ + + E    S    T    
Sbjct:   773 NIRCINISHCNKLKNVSWV---QKLPKLEVIELFDCREIEELIS-EHESPSVEDPTLFPS 828

Query:   441 LTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHESTKKVFPNLEY 500
             L  L   +L   P+L S       F F  +E L I  CP+VK        T+   P + Y
Sbjct:   829 LKTLRTRDL---PELNSILPS--RFSFQKVETLVITNCPRVKKLPFQERRTQMNLPTV-Y 882

Query:   501 LSQRVW 506
               ++ W
Sbjct:   883 CEEKWW 888

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
 Identities = 61/204 (29%), Positives = 90/204 (44%)

Query:     1 MHDVVRDVAISIASRVQHVFAVKNVVVPPTSW----PDKDALKVCTAISLKNSNISELPQ 56
             MHDVVR++A+   S +      +  +V   S     P  +       +SL N+ I E+  
Sbjct:   474 MHDVVREMALWTLSDLGK--NKERCIVQAGSGLRKVPKVEDWGAVRRLSLMNNGIEEISG 531

Query:    57 VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LPSS 115
               ECP+L    +  + S    VHI+ +        FF  MR+L VLD +  H L  LP  
Sbjct:   532 SPECPELTTLFLQENKSL---VHISGE--------FFRHMRKLVVLDLSENHQLDGLPEQ 580

Query:   116 LRLFQNLQTLSLDYCELGDI-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSN 174
             +     L+ L L +  +  + A + DLKTL+ L L        +  I +L+ LR L L N
Sbjct:   581 ISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMRRLGSIAGISKLSSLRTLGLRN 640

Query:   175 C-FNLKVIPPNVISSLSQLEELYI 197
                 L V+    +  L  LE L I
Sbjct:   641 SNIMLDVMSVKELHLLEHLEILTI 664

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
 Identities = 59/203 (29%), Positives = 95/203 (46%)

Query:     1 MHDVVRDVAISIASRVQHVFAVKNVVVPP----TSWPDKDALKVCTAISLKNSNISELPQ 56
             MHDVVR++A+ IAS ++      N +V         P     KV + +SL N+ I E+  
Sbjct:   478 MHDVVREMALWIASDLRK--HKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHG 535

Query:    57 VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFA-RMHLLPLPSS 115
               ECP+L    + ++       H+ N     I  +FF  M  L VLD +  ++L  LP  
Sbjct:   536 SPECPKLTTLFLQDNR------HLVN-----ISGEFFRSMPRLVVLDLSWNVNLSGLPDQ 584

Query:   116 LRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNC 175
             +    +L+ L L Y  +G +  VG LK   ++ L    M  L E +  + HL  L     
Sbjct:   585 ISELVSLRYLDLSYSSIGRLP-VGLLKLKKLMHLNLESMLCL-ESVSGIDHLSNLKTVRL 642

Query:   176 FNLKV-IPPNVISSLSQLEELYI 197
              NL++ +  +++  L +LE L +
Sbjct:   643 LNLRMWLTISLLEELERLENLEV 665

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

UNIPROTKB|Q9BTT6 LRRC1 "Leucine-rich repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 74/240 (30%), Positives = 115/240 (47%)

Query:    46 LKNSNISELP-QVFECPQLKYFHIANDPSRRIPVHIAN-------DPSRR-IPD--KFFT 94
             L  + + ELP Q F+  +L+   ++++  +R+P  IAN       D SR  IP+  +  +
Sbjct:    43 LDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNEIPEIPESIS 102

Query:    95 GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAI-VGDLKTLVILTLRGSD 153
               + L+V DF+   L  LP S    QNL  LS++   L  +   +G+L  L  L LR + 
Sbjct:   103 FCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENL 162

Query:   154 MEKLVEEIGQLTHLRLLDLSN--CFNLKVIPPNVISSLSQLEELYI-----GESPIMWGK 206
             +  L + + QL  L  LDL N   +NL    P  I +L  L++L++      E P   G 
Sbjct:   163 LTYLPDSLTQLRRLEELDLGNNEIYNL----PESIGALLHLKDLWLDGNQLSELPQEIGN 218

Query:   207 VGGV---D-GEGRNASL-DELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQ 261
             +  +   D  E R   L +E++ L+ LT L I     +T+P  +   K L   SIL  DQ
Sbjct:   219 LKNLLCLDVSENRLERLPEEISGLTSLTDLVISQNLLETIPDGIGKLKKL---SILKVDQ 275

GO:0005737 "cytoplasm" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:2442313 Lrrc1 "leucine rich repeat containing 1" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 74/240 (30%), Positives = 114/240 (47%)

Query:    46 LKNSNISELP-QVFECPQLKYFHIANDPSRRIPVHIAN-------DPSRR-IPD--KFFT 94
             L  + + ELP Q F+  +L+   ++++  +R+P  IAN       D SR  IP+  +   
Sbjct:    43 LDANQLRELPEQFFQLVKLRKLGLSDNEIQRLPPEIANFMQLVELDVSRNDIPEIPESIA 102

Query:    95 GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAI-VGDLKTLVILTLRGSD 153
               + L+V DF+   L  LP S    QNL  LS++   L  +   +G+L  L  L LR + 
Sbjct:   103 FCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENL 162

Query:   154 MEKLVEEIGQLTHLRLLDLSN--CFNLKVIPPNVISSLSQLEELYI-----GESPIMWGK 206
             +  L + + QL  L  LDL N   +NL    P  I +L  L++L++      E P   G 
Sbjct:   163 LTYLPDSLTQLRRLEELDLGNNEIYNL----PESIGALLHLKDLWLDGNQLSELPQEIGN 218

Query:   207 VGGV---D-GEGRNASL-DELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQ 261
             +  +   D  E R   L +E++ L+ LT L I     +T+P  +   K L   SIL  DQ
Sbjct:   219 LKNLLCLDVSENRLERLPEEISGLTSLTYLVISQNLLETIPEGIGKLKKL---SILKLDQ 275

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 54/213 (25%), Positives = 94/213 (44%)

Query:     1 MHDVVRDVAISIASRV-QHVF-AVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVF 58
             MHD+VR++A+ I S + +H    +    +     P+ +  +    +SL N+N  ++    
Sbjct:   476 MHDMVREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSP 535

Query:    59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LPSSLR 117
             EC +L    + N+  + + + +          +FF  M  L VLD +  H L  LP  + 
Sbjct:   536 ECVELITLFLQNN-YKLVDISM----------EFFRCMPSLAVLDLSENHSLSELPEEIS 584

Query:   118 LFQNLQTLSLD--YCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNC 175
                +LQ L L   Y E     +  +L+ LV L L  +   + +  I  L+ LR L L + 
Sbjct:   585 ELVSLQYLDLSGTYIERLPHGL-HELRKLVHLKLERTRRLESISGISYLSSLRTLRLRD- 642

Query:   176 FNLKVIPPNVISSLSQLEELYIGESPIMWGKVG 208
              +   +   ++  L  LE L +  + I  G VG
Sbjct:   643 -SKTTLDTGLMKELQLLEHLELITTDISSGLVG 674

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

UNIPROTKB|E1BS02 RSU1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 50/192 (26%), Positives = 91/192 (47%)

Query:    49 SNISELPQVFECPQLKYFHIANDPSRRIPVHIA-----------NDPSRRIPDKFFTGMR 97
             SN+ ++P +F    +    ++++    +P +IA           N+    +P +  + ++
Sbjct:    28 SNMLDVPGLFTLSHITQLVLSHNKLTTVPANIADLRNIEVLNFFNNQIEELPTQI-SSLQ 86

Query:    98 ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGD---LKTLVILTLRGSDM 154
             +L+ L+     L  LP        L+ L L Y  L + ++ G+   L TL  L L  +D 
Sbjct:    87 KLKHLNLGMNRLNTLPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDF 146

Query:   155 EKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI-GES-PIMWGKVGGVDG 212
             E L  +IG+LT L++L L +  N  +  P  I  L+QL+EL+I G    ++  ++G +D 
Sbjct:   147 EILPPDIGKLTKLQILSLRD--NDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDL 204

Query:   213 EGRNASLDELNN 224
              G+       NN
Sbjct:   205 TGQKQVFKAENN 216

GO:0007265 "Ras protein signal transduction" evidence=IEA

TAIR|locus:2171579 AT5G47250 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 65/252 (25%), Positives = 110/252 (43%)

Query:     1 MHDVVRDVAISIASRVQ--HVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVF 58
             MHD++RD+A+ I S  +    + VK      +  PD       T +SL N+ I  +P   
Sbjct:   470 MHDMIRDMALWIVSEFRDGERYVVKTDA-GLSQLPDVTDWTTVTKMSLFNNEIKNIPDDP 528

Query:    59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFA-RMHLLPLPSSLR 117
             E P         D +  + + + N+    I  KFF  M  L VLD +    +  LP  + 
Sbjct:   529 EFP---------DQTNLVTLFLQNNRLVDIVGKFFLVMSTLVVLDLSWNFQITELPKGIS 579

Query:   118 LFQNLQTLSLDYCELGDIAI-VGDLKTLVILTLRG-SDMEK--LVEEIGQLTHLRLLDLS 173
                +L+ L+L    +  +   +G L  L+ L L   S++    L+ E+ +L  LR    +
Sbjct:   580 ALVSLRLLNLSGTSIKHLPEGLGVLSKLIHLNLESTSNLRSVGLISELQKLQVLRFYGSA 639

Query:   174 ---NCFNLKVIPPN--------VISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDEL 222
                +C  LK++            +++ S LEE ++G + +  G   G+  EG   S   +
Sbjct:   640 AALDCCLLKILEQLKGLQLLTVTVNNDSVLEE-FLGSTRLA-GMTQGIYLEGLKVSFAAI 697

Query:   223 NNLSKLTSLEIL 234
               LS L  LE++
Sbjct:   698 GTLSSLHKLEMV 709

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.03110007 cc-nbs-lrr resistance protein (1315 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	508
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.001

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 18/192 (9%)

Query: 65  YFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQT 124
              +    +        N+ +   P         L+ LD +   +  LPS LR   NL+ 
Sbjct: 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKN 167

Query: 125 LSLDYCELGDI-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPP 183
           L L + +L D+  ++ +L  L  L L G+ +  L  EI  L+ L  LDLSN  N  +   
Sbjct: 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN--NSIIELL 225

Query: 184 NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN----------LSKLTSLEI 233
           + +S+L  L  L +  + +        +  G  ++L+ L+           L  LT+L  
Sbjct: 226 SSLSNLKNLSGLELSNNKLE----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRE 281

Query: 234 LIEDEKTLPRDL 245
           L     +L   L
Sbjct: 282 LDLSGNSLSNAL 293

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 144 LVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
           L  L L  + +  + +     L +L++LDLS   NL  I P   S L  L  L +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDL 55

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 22/126 (17%)

Query: 88  IPDKFFTGMRELRVLDF----------ARMHLLP----LPSSLRLFQNLQTLSLDYCELG 133
           I +  F GMR L  L F           R HL      LP  LRL      L  D   L 
Sbjct: 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRL------LRWDKYPLR 602

Query: 134 DIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLE 193
            +      + LV L ++GS +EKL + +  LT LR +DL    NLK IP   +S  + LE
Sbjct: 603 CMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLE 660

Query: 194 ELYIGE 199
            L + +
Sbjct: 661 TLKLSD 666

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	508
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.69
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.66
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.39
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.32
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.31
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.31
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.26
KOG4341	483	consensus F-box protein containing LRR [General fu	99.26
KOG4341	483	consensus F-box protein containing LRR [General fu	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.05
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.75
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.73
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.69
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.69
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.37
PLN03150	623	hypothetical protein; Provisional	98.32
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.3
PLN03150	623	hypothetical protein; Provisional	98.27
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.23
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.08
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.07
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.02
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.91
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.72
PRK15386	426	type III secretion protein GogB; Provisional	97.67
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.65
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.65
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.49
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.86
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.79
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.69
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.42
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.14
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.71
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.44
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.87
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.36
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.26
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.11
smart00370	26	LRR Leucine-rich repeats, outliers.	82.84
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.84

>PLN03210 Resistant to P

Probab=99.95  E-value=4e-26  Score=254.43  Aligned_cols=413  Identities=18%  Similarity=0.218  Sum_probs=241.9

Q ss_pred             CchhHHHHHHHHhcccc------cEEEEEecCcCCCCCCCCcCCCcccEEEeecCCCCCC--CC--CCCCCCCcEEEcCC
Q 047733            1 MHDVVRDVAISIASRVQ------HVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISEL--PQ--VFECPQLKYFHIAN   70 (508)
Q Consensus         1 mhdl~~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l--~~--~~~~~~L~~L~l~~   70 (508)
                      |||++||+|+++++++.      .+.+-.+......  .......+++.+++....+.++  ..  +..|.+|+.|.+..
T Consensus       490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl--~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~  567 (1153)
T PLN03210        490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL--EDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYT  567 (1153)
T ss_pred             hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH--HhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEec
Confidence            99999999999997753      1111110000000  0001123455565555444322  11  22677777776654


Q ss_pred             CCC-------CCCCcc------------cCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCC
Q 047733           71 DPS-------RRIPVH------------IANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCE  131 (508)
Q Consensus        71 ~~~-------~~~~~~------------~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  131 (508)
                      +..       ..+|.+            ...+....+|..+  .+.+|+.|+++++.+..++..+..+++|++|++++|.
T Consensus       568 ~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~  645 (1153)
T PLN03210        568 KKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK  645 (1153)
T ss_pred             ccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCC
Confidence            311       011110            0113334444443  3566677777777666666666666777777776665


Q ss_pred             -CCCccccCCCCCCcEEEccCC-CchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccC
Q 047733          132 -LGDIAIVGDLKTLVILTLRGS-DMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGG  209 (508)
Q Consensus       132 -l~~~~~i~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  209 (508)
                       +..++.++.+++|++|++++| .+..+|..+.++++|+.|++++|..+..+|..  ..+++|+.|++++|......   
T Consensus       646 ~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~---  720 (1153)
T PLN03210        646 NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKSF---  720 (1153)
T ss_pred             CcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCcccc---
Confidence             444444666677777777665 45566666667777777777766666666653  25666777776666432111   


Q ss_pred             cCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccc
Q 047733          210 VDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNG  289 (508)
Q Consensus       210 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~  289 (508)
                               +.   ...+|+.|+++++....+|..+ .+++|+.|.+...........                ......
T Consensus       721 ---------p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~----------------~~~l~~  771 (1153)
T PLN03210        721 ---------PD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWER----------------VQPLTP  771 (1153)
T ss_pred             ---------cc---ccCCcCeeecCCCccccccccc-cccccccccccccchhhcccc----------------ccccch
Confidence                     00   1245666777666665666554 455555555432111000000                000000


Q ss_pred             hhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCccccccc
Q 047733          290 GHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKI  369 (508)
Q Consensus       290 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~  369 (508)
                      .....+++|+.|++.++.....++..  ..++++|+.|++.+|..++.++.        ...+++|+.|.+++|..+..+
T Consensus       772 ~~~~~~~sL~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~--------~~~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        772 LMTMLSPSLTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPT--------GINLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             hhhhccccchheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCC--------CCCccccCEEECCCCCccccc
Confidence            11123578999999888766665443  35788999999999888877642        224788999999999877665


Q ss_pred             ccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEc
Q 047733          370 CRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILEL  449 (508)
Q Consensus       370 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l  449 (508)
                      +.      ..++|++|++.+. .++.+|.  .+..+++|+.|++.+|+++..+.            .....+++|+.+++
T Consensus       842 p~------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~------------~~~~~L~~L~~L~l  900 (1153)
T PLN03210        842 PD------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVS------------LNISKLKHLETVDF  900 (1153)
T ss_pred             cc------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccC------------cccccccCCCeeec
Confidence            32      2367888888874 6776653  35778899999999998888764            24456788888899


Q ss_pred             CCCccccccccCccc-----------cccCCccEEEEeeCCCcc
Q 047733          450 CYLPQLTSFCTGDLH-----------FEFPSLEKLRILECPQVK  482 (508)
Q Consensus       450 ~~c~~L~~~~~~~~~-----------~~~p~L~~L~i~~C~~l~  482 (508)
                      .+|++|+.++.....           ..+|+...+.+.+|.++.
T Consensus       901 ~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        901 SDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             CCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence            999888766432211           123445556677777664

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=1.7e-26  Score=256.87  Aligned_cols=154  Identities=25%  Similarity=0.345  Sum_probs=99.1

Q ss_pred             CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC-CCchh
Q 047733           37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL-PLPSS  115 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~  115 (508)
                      .++++|+|++++|.+.+..+...+++|++|++.+|.           ....+|..+ +.+++|++|++++|.+. .+|..
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~-----------~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~  183 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM-----------LSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNS  183 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCCc-----------ccccCChHH-hcCCCCCEEECccCcccccCChh
Confidence            467899999999988543333568899999998843           223444443 56666666666666654 45666


Q ss_pred             hccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCC
Q 047733          116 LRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL  192 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  192 (508)
                      ++++++|++|++++|.+..  |..++++.+|++|++++|.+. .+|..+.++++|++|++++|.....+|.. ++.+++|
T Consensus       184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L  262 (968)
T PLN00113        184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNL  262 (968)
T ss_pred             hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCC
Confidence            6666666666666666553  566666666666666666555 55666666666666666666533344444 5666666


Q ss_pred             cEEEeecCCCc
Q 047733          193 EELYIGESPIM  203 (508)
Q Consensus       193 ~~L~l~~~~~~  203 (508)
                      +.|++++|.+.
T Consensus       263 ~~L~L~~n~l~  273 (968)
T PLN00113        263 QYLFLYQNKLS  273 (968)
T ss_pred             CEEECcCCeee
Confidence            66666666544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=2.4e-26  Score=255.73  Aligned_cols=154  Identities=25%  Similarity=0.375  Sum_probs=90.6

Q ss_pred             CCCcccEEEeecCCCC-CCCCC-CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC-CCc
Q 047733           37 ALKVCTAISLKNSNIS-ELPQV-FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL-PLP  113 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~-~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~  113 (508)
                      .++++++|++++|.+. .+|.. ..+++|++|++++|..           ...+|..+ .++++|++|++++|.+. .+|
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-----------~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p  205 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-----------VGKIPNSL-TNLTSLEFLTLASNQLVGQIP  205 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-----------cccCChhh-hhCcCCCeeeccCCCCcCcCC
Confidence            4678999999999885 45543 3899999999998432           23334433 55556666666655554 345


Q ss_pred             hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733          114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLS  190 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  190 (508)
                      ..++++++|++|++++|.++.  |..++++++|++|++++|.+. .+|..+.++++|++|+++.|.....+|.. +..++
T Consensus       206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~  284 (968)
T PLN00113        206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQ  284 (968)
T ss_pred             hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-Hhhcc
Confidence            555555556666665555443  455555555666665555444 44555555555555555555433334443 45555


Q ss_pred             CCcEEEeecCCCc
Q 047733          191 QLEELYIGESPIM  203 (508)
Q Consensus       191 ~L~~L~l~~~~~~  203 (508)
                      +|++|++++|.+.
T Consensus       285 ~L~~L~Ls~n~l~  297 (968)
T PLN00113        285 KLISLDLSDNSLS  297 (968)
T ss_pred             CcCEEECcCCeec
Confidence            5555555555443

>PLN03210 Resistant to P

Probab=99.88  E-value=1e-21  Score=219.27  Aligned_cols=344  Identities=22%  Similarity=0.271  Sum_probs=226.7

Q ss_pred             CChhhhhCCCCccEEEecCCcC------C-CCchhhccCc-cccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH
Q 047733           88 IPDKFFTGMRELRVLDFARMHL------L-PLPSSLRLFQ-NLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV  158 (508)
Q Consensus        88 ~~~~~~~~l~~L~~L~l~~~~~------~-~l~~~~~~l~-~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp  158 (508)
                      +....|.++++|+.|.+..+..      . .+|..+..++ +|+.|.+.++.++. |..+ ...+|++|++.++.++.++
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~  627 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLW  627 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccc
Confidence            4455679999999999976642      1 3677777765 59999999998887 6655 5789999999999999999


Q ss_pred             HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc-
Q 047733          159 EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED-  237 (508)
Q Consensus       159 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-  237 (508)
                      .++..+++|+.|+++++..+..+|.  ++.+++|+.|++.+|....            .++..++.+++|+.|++++|. 
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~------------~lp~si~~L~~L~~L~L~~c~~  693 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV------------ELPSSIQYLNKLEDLDMSRCEN  693 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc------------ccchhhhccCCCCEEeCCCCCC
Confidence            8888999999999999877888876  6889999999999876432            345678889999999999875 


Q ss_pred             CccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccc----
Q 047733          238 EKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVL----  313 (508)
Q Consensus       238 ~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----  313 (508)
                      ...+|..+ .+++|+.|.+.++......+  ....+++.+.+........+..  ..+++|++|.+.++....-..    
T Consensus       694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~~n~i~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        694 LEILPTGI-NLKSLYRLNLSGCSRLKSFP--DISTNISWLDLDETAIEEFPSN--LRLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             cCccCCcC-CCCCCCEEeCCCCCCccccc--cccCCcCeeecCCCcccccccc--ccccccccccccccchhhccccccc
Confidence            66777665 78889999888765432211  1223344444443322111111  134555555554432110000    


Q ss_pred             -cCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCC
Q 047733          314 -YGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDK  392 (508)
Q Consensus       314 -~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~  392 (508)
                       ........++|+.|++++|+.+..++.       ..+.+++|+.|++.+|..++.++..    ..+++|+.|++++|..
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-------si~~L~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~Ls~c~~  837 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPSLVELPS-------SIQNLHKLEHLEIENCINLETLPTG----INLESLESLDLSGCSR  837 (1153)
T ss_pred             cchhhhhccccchheeCCCCCCccccCh-------hhhCCCCCCEEECCCCCCcCeeCCC----CCccccCEEECCCCCc
Confidence             000011235566666666554444322       1234566666666666655554321    1356666666666666


Q ss_pred             cceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccE
Q 047733          393 LKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEK  472 (508)
Q Consensus       393 l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~  472 (508)
                      +..+|.     ..++|++|++.+. .++.+            +..+..+++|+.|++.+|++++.++....  .+++|+.
T Consensus       838 L~~~p~-----~~~nL~~L~Ls~n-~i~~i------------P~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~  897 (1153)
T PLN03210        838 LRTFPD-----ISTNISDLNLSRT-GIEEV------------PWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLET  897 (1153)
T ss_pred             cccccc-----cccccCEeECCCC-CCccC------------hHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCe
Confidence            555432     1345666666553 33333            34566799999999999999999876533  5689999


Q ss_pred             EEEeeCCCcc
Q 047733          473 LRILECPQVK  482 (508)
Q Consensus       473 L~i~~C~~l~  482 (508)
                      +++++|++++
T Consensus       898 L~l~~C~~L~  907 (1153)
T PLN03210        898 VDFSDCGALT  907 (1153)
T ss_pred             eecCCCcccc
Confidence            9999999876

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.85  E-value=1.4e-21  Score=207.49  Aligned_cols=139  Identities=29%  Similarity=0.411  Sum_probs=93.1

Q ss_pred             CchhHHHHHHHHhc-----ccccEEEEEecCcCCCCCCCCcCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCC
Q 047733            1 MHDVVRDVAISIAS-----RVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRR   75 (508)
Q Consensus         1 mhdl~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~   75 (508)
                      |||||||+|.++|+     +|. .+...+.+..  ..|+...+..+|+.++.++.+..++....+++|++|.+.+|..  
T Consensus       483 mHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~--~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~--  557 (889)
T KOG4658|consen  483 MHDVVREMALWIASDFGKQEEN-QIVSDGVGLS--EIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD--  557 (889)
T ss_pred             eeHHHHHHHHHHhccccccccc-eEEECCcCcc--ccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch--
Confidence            99999999999998     666 2222222211  1334455678999999999998888777888999999988210  


Q ss_pred             CCcccCCCCCCCCChhhhhCCCCccEEEecCCc-CCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCC
Q 047733           76 IPVHIANDPSRRIPDKFFTGMRELRVLDFARMH-LLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGS  152 (508)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~  152 (508)
                              -...++..+|..++.|++||+++|. +.++|..++.+.+||+|+++++.++. |.+++++..|++|++..+
T Consensus       558 --------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~  628 (889)
T KOG4658|consen  558 --------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT  628 (889)
T ss_pred             --------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc
Confidence                    1556777778889999999999753 34566666655555555555555444 444444444444444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=2.8e-23  Score=201.19  Aligned_cols=194  Identities=16%  Similarity=0.286  Sum_probs=150.1

Q ss_pred             CCCcccEEEeecCCC--CCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           37 ALKVCTAISLKNSNI--SELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~--~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      ..+-||-+++++|.+  ..+|... .|+.++.|.+..            ....++|..+ +.+.+|++|.+++|++.++.
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr------------t~L~~vPeEL-~~lqkLEHLs~~HN~L~~vh   71 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR------------TKLEQVPEEL-SRLQKLEHLSMAHNQLISVH   71 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEech------------hhhhhChHHH-HHHhhhhhhhhhhhhhHhhh
Confidence            456688889999988  4577655 888999998877            5566777776 78888888888888888777


Q ss_pred             hhhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733          114 SSLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLS  190 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  190 (508)
                      ..+..++.||.+++++|+++.   |..|..+.-|..||++.|.+++.|..+.+-+++-+|++++|+ +..+|...+-++.
T Consensus        72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLt  150 (1255)
T KOG0444|consen   72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLT  150 (1255)
T ss_pred             hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhH
Confidence            778888888888888888664   678888888888888888888888888888888888888877 8888877677888


Q ss_pred             CCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC-CCCccCCCccEEEEE
Q 047733          191 QLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP-RDLSFFKMLQRYSIL  257 (508)
Q Consensus       191 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~  257 (508)
                      .|-.|++++|.+.             .++..+.++.+|+.|.+++|....+. ..+.++++|..|+++
T Consensus       151 DLLfLDLS~NrLe-------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  151 DLLFLDLSNNRLE-------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS  205 (1255)
T ss_pred             hHhhhccccchhh-------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence            8888888888765             35566788888888888887643332 223345555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=2e-21  Score=187.14  Aligned_cols=331  Identities=17%  Similarity=0.201  Sum_probs=140.1

Q ss_pred             hhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCC
Q 047733           91 KFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHL  167 (508)
Q Consensus        91 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L  167 (508)
                      .+|.++++|+.+++..|.++.+|.......+|+.|++.+|.|+.  -+.+..++.|+.||++.|.|..+|.. +-.=.++
T Consensus        96 ~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni  175 (873)
T KOG4194|consen   96 EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI  175 (873)
T ss_pred             HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence            33444444444444444444444433333344444444444444  13444444444444444444444321 1122344


Q ss_pred             ceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCc
Q 047733          168 RLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLS  246 (508)
Q Consensus       168 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~  246 (508)
                      ++|+|+.|. ++++..+.+..+.+|..|.++.|.++.-.            +..+.++++|+.|++..|...-. -..+.
T Consensus       176 ~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp------------~r~Fk~L~~L~~LdLnrN~irive~ltFq  242 (873)
T KOG4194|consen  176 KKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLP------------QRSFKRLPKLESLDLNRNRIRIVEGLTFQ  242 (873)
T ss_pred             eEEeecccc-ccccccccccccchheeeecccCcccccC------------HHHhhhcchhhhhhccccceeeehhhhhc
Confidence            444444444 44433333444444444444444443211            12344444444444444432111 01112


Q ss_pred             cCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcE
Q 047733          247 FFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKH  326 (508)
Q Consensus       247 ~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  326 (508)
                      .+++|+.+.+...+                       .....+++...+.++++|++... .++.+.... .-++..|+.
T Consensus       243 gL~Sl~nlklqrN~-----------------------I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~-lfgLt~L~~  297 (873)
T KOG4194|consen  243 GLPSLQNLKLQRND-----------------------ISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGW-LFGLTSLEQ  297 (873)
T ss_pred             CchhhhhhhhhhcC-----------------------cccccCcceeeecccceeecccc-hhhhhhccc-ccccchhhh
Confidence            33333333332221                       11222333334455555555432 222221111 124555555


Q ss_pred             EEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccC
Q 047733          327 LEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQ  406 (508)
Q Consensus       327 L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~  406 (508)
                      |+++. +.|..+ +...|.     -.++|+.|+++. ++++++..+.  ...+..|++|.+++ +++.++... ....+.
T Consensus       298 L~lS~-NaI~ri-h~d~Ws-----ftqkL~~LdLs~-N~i~~l~~~s--f~~L~~Le~LnLs~-Nsi~~l~e~-af~~ls  365 (873)
T KOG4194|consen  298 LDLSY-NAIQRI-HIDSWS-----FTQKLKELDLSS-NRITRLDEGS--FRVLSQLEELNLSH-NSIDHLAEG-AFVGLS  365 (873)
T ss_pred             hccch-hhhhee-ecchhh-----hcccceeEeccc-cccccCChhH--HHHHHHhhhhcccc-cchHHHHhh-HHHHhh
Confidence            55555 334332 222232     235566666655 3344432211  12345556666655 245544332 224455


Q ss_pred             CCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCCcc
Q 047733          407 QLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVK  482 (508)
Q Consensus       407 ~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~l~  482 (508)
                      +|++|+++.- .+.-.+...        ......+|+|++|.+.|. +|+.++..++. .++.||.|++.+.+-.+
T Consensus       366 sL~~LdLr~N-~ls~~IEDa--------a~~f~gl~~LrkL~l~gN-qlk~I~krAfs-gl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  366 SLHKLDLRSN-ELSWCIEDA--------AVAFNGLPSLRKLRLTGN-QLKSIPKRAFS-GLEALEHLDLGDNAIAS  430 (873)
T ss_pred             hhhhhcCcCC-eEEEEEecc--------hhhhccchhhhheeecCc-eeeecchhhhc-cCcccceecCCCCccee
Confidence            6666665431 111000000        223344666666666663 66666555443 45666666666665543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=7.5e-23  Score=198.22  Aligned_cols=349  Identities=20%  Similarity=0.271  Sum_probs=185.3

Q ss_pred             cCCCcccEEEeecCCCCCCCCC-CCCCCCcEEEcCCCCCCCCCccc-------------CCCCCCCCChhhhhCCCCccE
Q 047733           36 DALKVCTAISLKNSNISELPQV-FECPQLKYFHIANDPSRRIPVHI-------------ANDPSRRIPDKFFTGMRELRV  101 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~L~~  101 (508)
                      ..|+.++.|-+....+..+|.- ..+.+|+-|.++.|....+...+             .+-...-+|..+| ++..|.+
T Consensus        29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~  107 (1255)
T KOG0444|consen   29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTI  107 (1255)
T ss_pred             HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-cccccee
Confidence            3455555555555555555432 24555555555543211110000             0112234555553 5666666


Q ss_pred             EEecCCcCCCCchhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCC
Q 047733          102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLK  179 (508)
Q Consensus       102 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~  179 (508)
                      ||+|+|++.++|..+.+.+++-.|++++|+|.. | ..+.++.-|-+||++.|.++.+|..+.++.+|++|++++|+ +.
T Consensus       108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~  186 (1255)
T KOG0444|consen  108 LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LN  186 (1255)
T ss_pred             eecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hh
Confidence            666666666666666666666666666666655 4 44556666666666666666666666666666666666665 22


Q ss_pred             ccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEec
Q 047733          180 VIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIG  259 (508)
Q Consensus       180 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~  259 (508)
                      ...-.-+..+.+|+.|.+++++.+-           ..++..+..+.||+.++++.|....+|..+..+++|+.|++++.
T Consensus       187 hfQLrQLPsmtsL~vLhms~TqRTl-----------~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  187 HFQLRQLPSMTSLSVLHMSNTQRTL-----------DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             HHHHhcCccchhhhhhhcccccchh-----------hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence            2111013344445555555544331           13445556666666666666666666666666666666655432


Q ss_pred             CcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeee
Q 047733          260 DQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVV  339 (508)
Q Consensus       260 ~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~  339 (508)
                      .                                     +++|.+             ..+.+.+|++|+++. +.++.++
T Consensus       256 ~-------------------------------------iteL~~-------------~~~~W~~lEtLNlSr-NQLt~LP  284 (1255)
T KOG0444|consen  256 K-------------------------------------ITELNM-------------TEGEWENLETLNLSR-NQLTVLP  284 (1255)
T ss_pred             c-------------------------------------eeeeec-------------cHHHHhhhhhhcccc-chhccch
Confidence            2                                     111111             013355666666665 3455443


Q ss_pred             ecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccch
Q 047733          340 DTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNL  419 (508)
Q Consensus       340 ~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L  419 (508)
                      +       ....++.|+.|.+.+. .++- ...+.+++.+-+|+.+...+ +.++-+|.  .++.|+.|+.|.+. |+.|
T Consensus       285 ~-------avcKL~kL~kLy~n~N-kL~F-eGiPSGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL~L~-~NrL  351 (1255)
T KOG0444|consen  285 D-------AVCKLTKLTKLYANNN-KLTF-EGIPSGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKLKLD-HNRL  351 (1255)
T ss_pred             H-------HHhhhHHHHHHHhccC-cccc-cCCccchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHhccc-ccce
Confidence            3       1223456666655442 2221 11133445566666666665 34555542  35667777777766 3444


Q ss_pred             hhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEE
Q 047733          420 DVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRI  475 (508)
Q Consensus       420 ~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i  475 (508)
                      -.+            +.++..+|-|+.|++.+.|+|..=|...-+.  .+|+.-.|
T Consensus       352 iTL------------PeaIHlL~~l~vLDlreNpnLVMPPKP~da~--~~lefYNI  393 (1255)
T KOG0444|consen  352 ITL------------PEAIHLLPDLKVLDLRENPNLVMPPKPNDAR--KKLEFYNI  393 (1255)
T ss_pred             eec------------hhhhhhcCCcceeeccCCcCccCCCCcchhh--hcceeeec
Confidence            444            4566677778888888777776554433222  45555444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.83  E-value=2.1e-21  Score=186.98  Aligned_cols=210  Identities=18%  Similarity=0.270  Sum_probs=114.7

Q ss_pred             CCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcc-----------cCCCCCCCCChhhhhCCCCccEEE
Q 047733           37 ALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVH-----------IANDPSRRIPDKFFTGMRELRVLD  103 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~L~~L~  103 (508)
                      .+...+.|++++|.+.++..  +.++++|+.+++.+|...++|..           +..+.+..+.....+.++.||.||
T Consensus        76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD  155 (873)
T ss_pred             CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence            46678899999999976644  34999999999999776666532           112223333333234455555555


Q ss_pred             ecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCC
Q 047733          104 FARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLK  179 (508)
Q Consensus       104 l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~  179 (508)
                      ++.|.++.+| .+|..-.++++|++++|.|+.  ...|..+.+|-.|.+++|.++.+| +.+.++++|+.|+|..|. +.
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-ir  234 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IR  234 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-ee
Confidence            5555555444 233344455555555555554  244555555555555555555555 233445555555555544 33


Q ss_pred             ccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC-CCCccCCCccEEEEEe
Q 047733          180 VIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP-RDLSFFKMLQRYSILI  258 (508)
Q Consensus       180 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~  258 (508)
                      .+....+..+++|+.|.+..|.+.....            ..+-.+.++++|++..|...++. .|+..++.|+.|+++.
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~D------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~  302 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDD------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY  302 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccC------------cceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence            3333224455555555555555442221            11333445566666666544433 3455666666666654


Q ss_pred             c
Q 047733          259 G  259 (508)
Q Consensus       259 ~  259 (508)
                      .
T Consensus       303 N  303 (873)
T KOG4194|consen  303 N  303 (873)
T ss_pred             h
Confidence            3

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.69  E-value=8.2e-20  Score=168.69  Aligned_cols=158  Identities=22%  Similarity=0.303  Sum_probs=87.5

Q ss_pred             CCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhc
Q 047733           84 PSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIG  162 (508)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~  162 (508)
                      .+..+|.++ ..+.+|..+++.+|++..+|+..-+++.|+.|+...|-+.. |+.++.+.+|..|++..|++..+| .+.
T Consensus       148 ~i~slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~  225 (565)
T KOG0472|consen  148 QISSLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFP  225 (565)
T ss_pred             ccccCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCC
Confidence            334444444 34555555555555555555444445555555555544444 555555555555555555555555 455


Q ss_pred             cCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC
Q 047733          163 QLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP  242 (508)
Q Consensus       163 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  242 (508)
                      .|..|.++++..|+ +..+|......++++..|++..|++.             +.+.++..+++|..|+++.+.....|
T Consensus       226 gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklk-------------e~Pde~clLrsL~rLDlSNN~is~Lp  291 (565)
T KOG0472|consen  226 GCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLK-------------EVPDEICLLRSLERLDLSNNDISSLP  291 (565)
T ss_pred             ccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccccc-------------cCchHHHHhhhhhhhcccCCccccCC
Confidence            55555555555544 55555544445666666666665554             45556666666666666666666666


Q ss_pred             CCCccCCCccEEEEEe
Q 047733          243 RDLSFFKMLQRYSILI  258 (508)
Q Consensus       243 ~~l~~~~~L~~L~i~~  258 (508)
                      ..++++ .|+.|.+.+
T Consensus       292 ~sLgnl-hL~~L~leG  306 (565)
T KOG0472|consen  292 YSLGNL-HLKFLALEG  306 (565)
T ss_pred             cccccc-eeeehhhcC
Confidence            666555 555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.66  E-value=1.1e-18  Score=176.88  Aligned_cols=403  Identities=21%  Similarity=0.270  Sum_probs=193.8

Q ss_pred             ccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccC
Q 047733           41 CTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLF  119 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l  119 (508)
                      +++|++++|.+..+|.-. .+.+|+.|.++.|.++..|            .+. .++++|++++|.+|....+|.++..+
T Consensus        47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp------------~s~-~~~~~l~~lnL~~n~l~~lP~~~~~l  113 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVP------------SSC-SNMRNLQYLNLKNNRLQSLPASISEL  113 (1081)
T ss_pred             eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCc------------hhh-hhhhcchhheeccchhhcCchhHHhh
Confidence            777788877777776533 6777777777775544444            232 55666666666666666666666666


Q ss_pred             ccccEEeccCCCCCC-ccccCCCCCCcEEEccCC-------------------Cch-hhHHHhccCCCCceEeccCCCCC
Q 047733          120 QNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGS-------------------DME-KLVEEIGQLTHLRLLDLSNCFNL  178 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~-------------------~i~-~lp~~~~~l~~L~~L~l~~~~~~  178 (508)
                      ++|++|++++|.+.. |..+..+..+..++.++|                   .+. .++.++..++.  .|+++.|...
T Consensus       114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~  191 (1081)
T KOG0618|consen  114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME  191 (1081)
T ss_pred             hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh
Confidence            666666666665544 433333333333333322                   111 22223333333  3555554422


Q ss_pred             CccChhhhhc--------------------CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733          179 KVIPPNVISS--------------------LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE  238 (508)
Q Consensus       179 ~~~~~~~l~~--------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  238 (508)
                       .+.   +..                    -++|+.|..+.|.++.              ......-.+|+.++++.+..
T Consensus       192 -~~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~--------------~~~~p~p~nl~~~dis~n~l  253 (1081)
T KOG0618|consen  192 -VLD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT--------------LDVHPVPLNLQYLDISHNNL  253 (1081)
T ss_pred             -hhh---hhhccchhhhhhhhcccceEEecCcchheeeeccCccee--------------eccccccccceeeecchhhh
Confidence             110   112                    2334444444444431              11122234667777777776


Q ss_pred             ccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcC
Q 047733          239 KTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHG  318 (508)
Q Consensus       239 ~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  318 (508)
                      ..+|.|+..+.+|+.+.................++|+++.+..+..-. .......+++|++|++... ++...+.... 
T Consensus       254 ~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N-~L~~lp~~~l-  330 (1081)
T KOG0618|consen  254 SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSN-NLPSLPDNFL-  330 (1081)
T ss_pred             hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhc-cccccchHHH-
Confidence            667777677777776666543322221122222223222222211111 1222234667777777543 3333222110 


Q ss_pred             CCCC-CCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceec
Q 047733          319 EGFP-QLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVF  397 (508)
Q Consensus       319 ~~~~-~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  397 (508)
                      .-.. .|+.|..+. ..+....     .+ +...++.|+.|.+.+ +.+++-++  .....+++|+.|++++ .+|..+|
T Consensus       331 ~v~~~~l~~ln~s~-n~l~~lp-----~~-~e~~~~~Lq~Lylan-N~Ltd~c~--p~l~~~~hLKVLhLsy-NrL~~fp  399 (1081)
T KOG0618|consen  331 AVLNASLNTLNVSS-NKLSTLP-----SY-EENNHAALQELYLAN-NHLTDSCF--PVLVNFKHLKVLHLSY-NRLNSFP  399 (1081)
T ss_pred             hhhhHHHHHHhhhh-ccccccc-----cc-cchhhHHHHHHHHhc-Ccccccch--hhhccccceeeeeecc-cccccCC
Confidence            1111 133333322 1111111     11 334556666666666 33444332  1234566677777666 3555553


Q ss_pred             chhhhhccCCCcEEeeccccchhhhhcc-------c---cCCcCCC-CCCceeeccccCeeEcCCCccccccccCccccc
Q 047733          398 PLVIGRGLQQLQFIEVTECQNLDVIFAA-------E---RGDESSN-SNTQVIELTQLTILELCYLPQLTSFCTGDLHFE  466 (508)
Q Consensus       398 ~~~~~~~l~~L~~L~i~~c~~L~~i~~~-------~---~~~~~~~-~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~  466 (508)
                      . +...+++.||+|+++| .+|+.+...       +   .....-. .+ .+..+|.|+.++++. .+|+.+-... ...
T Consensus       400 a-s~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~-~~p  474 (1081)
T KOG0618|consen  400 A-SKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPE-ALP  474 (1081)
T ss_pred             H-HHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhh-hCC
Confidence            3 4456666667776666 334333210       0   0000000 12 334567788888875 4666553222 113


Q ss_pred             cCCccEEEEeeCCCcccccccccCCceecCChHHHh
Q 047733          467 FPSLEKLRILECPQVKFKSSIHESTKKVFPNLEYLS  502 (508)
Q Consensus       467 ~p~L~~L~i~~C~~l~~~~~~~~~~~~~~p~l~~L~  502 (508)
                      +|.||.|+++|.+++-|.       +..||.++.++
T Consensus       475 ~p~LkyLdlSGN~~l~~d-------~~~l~~l~~l~  503 (1081)
T KOG0618|consen  475 SPNLKYLDLSGNTRLVFD-------HKTLKVLKSLS  503 (1081)
T ss_pred             CcccceeeccCCcccccc-------hhhhHHhhhhh
Confidence            478888888888876554       23666666665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.62  E-value=2.2e-18  Score=174.75  Aligned_cols=378  Identities=18%  Similarity=0.172  Sum_probs=228.1

Q ss_pred             ccEEEeecCCCCCCC--CCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhcc
Q 047733           41 CTAISLKNSNISELP--QVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRL  118 (508)
Q Consensus        41 lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~  118 (508)
                      +..|++..|-+-..|  ...+.-+|++|+++.            +...++|..+ ..+.+|+.|+++.|.+.++|.+..+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsn------------n~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~   89 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSN------------NQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSN   89 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccc------------cccccCCchh-hhHHHHhhcccchhhHhhCchhhhh
Confidence            777888877775544  222455699999988            4555666665 7789999999999999999998999


Q ss_pred             CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChh-------------
Q 047733          119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPN-------------  184 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-------------  184 (508)
                      +.+|+++.|.++++.. |.++..+++|++|++++|.+..+|..+..++.+..+..++|..+..++..             
T Consensus        90 ~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~  169 (1081)
T KOG0618|consen   90 MRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLG  169 (1081)
T ss_pred             hhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcc
Confidence            9999999999998776 89999999999999999999888887777777777777766323332221             


Q ss_pred             --hhhcCCCCcE-EEeecCCCcc-ccccCcCCCCcccchhhc----cCCCCccEEEEecccCccCCCCCccCCCccEEEE
Q 047733          185 --VISSLSQLEE-LYIGESPIMW-GKVGGVDGEGRNASLDEL----NNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSI  256 (508)
Q Consensus       185 --~l~~l~~L~~-L~l~~~~~~~-~~~~~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i  256 (508)
                        ++.....+++ |++..|.+.- +...+.........-..+    -.-++|+.|..+.|.....-.. ....+|+.+.+
T Consensus       170 ~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-p~p~nl~~~di  248 (1081)
T KOG0618|consen  170 GSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-PVPLNLQYLDI  248 (1081)
T ss_pred             cchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-cccccceeeec
Confidence              1111222333 5555554430 000000000000000000    1123455566555553322111 35667888888


Q ss_pred             EecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCce
Q 047733          257 LIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLL  336 (508)
Q Consensus       257 ~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  336 (508)
                      +.........+...+.+|+.+....+.....+.. .....+|+.|.+..+ .++.++..  .+++..|++|++.. +++.
T Consensus       249 s~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~n-el~yip~~--le~~~sL~tLdL~~-N~L~  323 (1081)
T KOG0618|consen  249 SHNNLSNLPEWIGACANLEALNANHNRLVALPLR-ISRITSLVSLSAAYN-ELEYIPPF--LEGLKSLRTLDLQS-NNLP  323 (1081)
T ss_pred             chhhhhcchHHHHhcccceEecccchhHHhhHHH-HhhhhhHHHHHhhhh-hhhhCCCc--ccccceeeeeeehh-cccc
Confidence            8665544445555555564444433332222222 224567888877654 44444332  35699999999988 4566


Q ss_pred             eeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccc
Q 047733          337 CVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTEC  416 (508)
Q Consensus       337 ~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c  416 (508)
                      .+++..     ....-.+|+.|..+. ..+...+  ......++.|+.|++.+- .+++- .+....++++|+.|+++. 
T Consensus       324 ~lp~~~-----l~v~~~~l~~ln~s~-n~l~~lp--~~~e~~~~~Lq~LylanN-~Ltd~-c~p~l~~~~hLKVLhLsy-  392 (1081)
T KOG0618|consen  324 SLPDNF-----LAVLNASLNTLNVSS-NKLSTLP--SYEENNHAALQELYLANN-HLTDS-CFPVLVNFKHLKVLHLSY-  392 (1081)
T ss_pred             ccchHH-----HhhhhHHHHHHhhhh-ccccccc--cccchhhHHHHHHHHhcC-ccccc-chhhhccccceeeeeecc-
Confidence            554311     011112355555544 2333332  234567899999999983 66653 123457899999999987 


Q ss_pred             cchhhhhccccCCcCCCCCCceeeccccCeeEcCCCcccccccc
Q 047733          417 QNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCT  460 (508)
Q Consensus       417 ~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~  460 (508)
                      ..|.++.           ...+..++.|++|+++|. +|+.++.
T Consensus       393 NrL~~fp-----------as~~~kle~LeeL~LSGN-kL~~Lp~  424 (1081)
T KOG0618|consen  393 NRLNSFP-----------ASKLRKLEELEELNLSGN-KLTTLPD  424 (1081)
T ss_pred             cccccCC-----------HHHHhchHHhHHHhcccc-hhhhhhH
Confidence            4455544           234455677777777774 6666664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=1.3e-17  Score=136.82  Aligned_cols=150  Identities=27%  Similarity=0.443  Sum_probs=76.8

Q ss_pred             CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      ++.+++|.+++|.+..+|+.+ .+.+|++|++.+            +.+.++|.++ +.+++|++|+++-|.+..+|..|
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n------------nqie~lp~~i-ssl~klr~lnvgmnrl~~lprgf   98 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN------------NQIEELPTSI-SSLPKLRILNVGMNRLNILPRGF   98 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhccc------------chhhhcChhh-hhchhhhheecchhhhhcCcccc
Confidence            445555556655555554433 555555555554            2333334343 45555555555555555555555


Q ss_pred             ccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCc
Q 047733          117 RLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLE  193 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  193 (508)
                      +.++.|+.|++.+|.+.+   |..+..+..|+-|+++.|+++-+|..++++++|+.|.++.|. +-++|.. ++.+..|+
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lr  176 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLR  176 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHH
Confidence            555555555555555443   344444455555555555555555555555555555555544 3344444 45555555


Q ss_pred             EEEeecCCC
Q 047733          194 ELYIGESPI  202 (508)
Q Consensus       194 ~L~l~~~~~  202 (508)
                      +|.+++|.+
T Consensus       177 elhiqgnrl  185 (264)
T KOG0617|consen  177 ELHIQGNRL  185 (264)
T ss_pred             HHhccccee
Confidence            555554443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.59  E-value=1.2e-16  Score=147.90  Aligned_cols=220  Identities=19%  Similarity=0.292  Sum_probs=148.7

Q ss_pred             CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccC-----------CCCCCCCChhhhhCCCCccEEEec
Q 047733           38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIA-----------NDPSRRIPDKFFTGMRELRVLDFA  105 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~L~~L~l~  105 (508)
                      |+.+++++...|-++.+|+.. .+..|..|++..|.++.+| .++           .+.+.-+|.....++.++.+||+.
T Consensus       182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR  260 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR  260 (565)
T ss_pred             HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence            778888888888888887654 8888888888888888877 333           355667888887899999999999


Q ss_pred             CCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCC-------------------
Q 047733          106 RMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLT-------------------  165 (508)
Q Consensus       106 ~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~-------------------  165 (508)
                      +|+++++|..++.+.+|.+||+++|.++. |..+|++ +|+.|.+.||.+..+-+.+-+..                   
T Consensus       261 dNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~  339 (565)
T KOG0472|consen  261 DNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ  339 (565)
T ss_pred             ccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence            99999999999999999999999999998 8999999 99999999998876655433222                   


Q ss_pred             -----------------------CCceEeccCCCCCCccChhhhhcCC--CCcEEEeecCCCccccccC-----------
Q 047733          166 -----------------------HLRLLDLSNCFNLKVIPPNVISSLS--QLEELYIGESPIMWGKVGG-----------  209 (508)
Q Consensus       166 -----------------------~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~-----------  209 (508)
                                             +.+.|+++.-+ ++.+|..++..-.  -....+++.|.+..-..+.           
T Consensus       340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~  418 (565)
T KOG0472|consen  340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLV  418 (565)
T ss_pred             CcccccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHH
Confidence                                   22222222211 2333322111110  1222333333221111000           


Q ss_pred             cCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733          210 VDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD  260 (508)
Q Consensus       210 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~  260 (508)
                      ........++..++.+++|..|++++|....+|..++.+..|+.++++...
T Consensus       419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr  469 (565)
T KOG0472|consen  419 LSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR  469 (565)
T ss_pred             hhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc
Confidence            011111234456677788888888888888888888788888888887554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=4.7e-17  Score=133.55  Aligned_cols=170  Identities=22%  Similarity=0.411  Sum_probs=150.7

Q ss_pred             CCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCC
Q 047733           51 ISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYC  130 (508)
Q Consensus        51 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~  130 (508)
                      +.+++.++.+++++.|.++.            +....+|..+ ..+++|++|++.+|+++++|.+++.+++|+.|+++.|
T Consensus        23 f~~~~gLf~~s~ITrLtLSH------------NKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn   89 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSH------------NKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN   89 (264)
T ss_pred             Hhhcccccchhhhhhhhccc------------CceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchh
Confidence            46677778999999999998            4555666666 7899999999999999999999999999999999999


Q ss_pred             CCCC-ccccCCCCCCcEEEccCCCch--hhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccc
Q 047733          131 ELGD-IAIVGDLKTLVILTLRGSDME--KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKV  207 (508)
Q Consensus       131 ~l~~-~~~i~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  207 (508)
                      ++.. |.++|.++-|+.||+.+|.+.  .+|..+..++.|+.|++++|. ...+|++ ++++++|+.|.+..|.+.    
T Consensus        90 rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll----  163 (264)
T KOG0617|consen   90 RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL----  163 (264)
T ss_pred             hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh----
Confidence            9776 999999999999999999776  788888999999999999977 8889998 799999999999988765    


Q ss_pred             cCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccC
Q 047733          208 GGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFF  248 (508)
Q Consensus       208 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~  248 (508)
                               +.+.+++.+..|++|.+.++....+|+.++.+
T Consensus       164 ---------~lpkeig~lt~lrelhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  164 ---------SLPKEIGDLTRLRELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             ---------hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence                     57788999999999999999988888876444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.39  E-value=8.1e-12  Score=130.91  Aligned_cols=132  Identities=22%  Similarity=0.260  Sum_probs=68.7

Q ss_pred             ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCc
Q 047733           41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ  120 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  120 (508)
                      -..|+++.+.+..+|... .++|+.|++.+|.+.            .+|.    .+++|++|++++|+++.+|..   .+
T Consensus       203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt------------~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~  262 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT------------SLPA----LPPELRTLEVSGNQLTSLPVL---PP  262 (788)
T ss_pred             CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC------------CCCC----CCCCCcEEEecCCccCcccCc---cc
Confidence            345666666666665532 235666666653332            2221    235566666666666655532   23


Q ss_pred             cccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeec
Q 047733          121 NLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGE  199 (508)
Q Consensus       121 ~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  199 (508)
                      +|+.|++.+|.++. |..   ..+|+.|++++|.++.+|.   ..++|+.|++++|. +..+|..    ..+|+.|++.+
T Consensus       263 sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~  331 (788)
T PRK15387        263 GLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQ-LASLPAL----PSELCKLWAYN  331 (788)
T ss_pred             ccceeeccCCchhhhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCc-cccCCCC----ccccccccccc
Confidence            56666666665554 221   2445566666666665553   23456666666654 4444431    12355555555


Q ss_pred             CCCc
Q 047733          200 SPIM  203 (508)
Q Consensus       200 ~~~~  203 (508)
                      |.++
T Consensus       332 N~L~  335 (788)
T PRK15387        332 NQLT  335 (788)
T ss_pred             Cccc
Confidence            5443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.32  E-value=1.2e-11  Score=129.75  Aligned_cols=171  Identities=20%  Similarity=0.164  Sum_probs=117.8

Q ss_pred             cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733           36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS  115 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  115 (508)
                      .+.++++.|++..|.+..+|..  .++|++|++.+|.+..+            |.    ..++|+.|++++|.++.+|..
T Consensus       219 ~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsL------------P~----lp~sL~~L~Ls~N~L~~Lp~l  280 (788)
T PRK15387        219 CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSL------------PV----LPPGLLELSIFSNPLTHLPAL  280 (788)
T ss_pred             chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcc------------cC----cccccceeeccCCchhhhhhc
Confidence            3556899999999999988864  68999999999544433            32    235788899999988877753


Q ss_pred             hccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcE
Q 047733          116 LRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE  194 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  194 (508)
                      .   ..|+.|++++|+++. |..   .++|++|++++|.++.+|..   ..+|+.|++++|. +..+|.  +  ..+|+.
T Consensus       281 p---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~--l--p~~Lq~  346 (788)
T PRK15387        281 P---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPT--L--PSGLQE  346 (788)
T ss_pred             h---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCc-cccccc--c--ccccce
Confidence            3   467888888888777 432   46789999999888877642   2357778888876 666664  1  147888


Q ss_pred             EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEE
Q 047733          195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSIL  257 (508)
Q Consensus       195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  257 (508)
                      |++++|.++..             +. +  ..+|+.|++++|....+|..   ..+|+.|.+.
T Consensus       347 LdLS~N~Ls~L-------------P~-l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs  390 (788)
T PRK15387        347 LSVSDNQLASL-------------PT-L--PSELYKLWAYNNRLTSLPAL---PSGLKELIVS  390 (788)
T ss_pred             EecCCCccCCC-------------CC-C--CcccceehhhccccccCccc---ccccceEEec
Confidence            88888877521             11 1  13566677777665555543   2345555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.31  E-value=1.1e-11  Score=130.72  Aligned_cols=177  Identities=19%  Similarity=0.273  Sum_probs=103.6

Q ss_pred             CcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhcc
Q 047733           39 KVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRL  118 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~  118 (508)
                      .+...|.+.++.+..+|... .+.|+.|++.+|            .+..+|..++   .+|+.|++++|.++.+|..+. 
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N------------~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~-  240 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI-PEQITTLILDNN------------ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP-  240 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc-ccCCcEEEecCC------------CCCcCChhhc---cCCCEEECCCCccccCChhhh-
Confidence            44567777777776666532 346777777763            3333444332   467777777777776665443 


Q ss_pred             CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                       .+|+.|++++|.+.. |..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|. +..+|.. +.  ++|+.|++
T Consensus       241 -~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~L  311 (754)
T PRK15370        241 -DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNV  311 (754)
T ss_pred             -ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHh
Confidence             357777777777666 44442  467777777777766665432  467777777765 5556543 22  35666777


Q ss_pred             ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEe
Q 047733          198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILI  258 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~  258 (508)
                      ++|.++..             +..+  .++|+.|++++|....+|..+  +++|+.|.+..
T Consensus       312 s~N~Lt~L-------------P~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~  355 (754)
T PRK15370        312 QSNSLTAL-------------PETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSK  355 (754)
T ss_pred             cCCccccC-------------Cccc--cccceeccccCCccccCChhh--cCcccEEECCC
Confidence            66665411             1111  146667777766655555543  24566665553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.31  E-value=1.7e-12  Score=138.84  Aligned_cols=258  Identities=21%  Similarity=0.238  Sum_probs=134.0

Q ss_pred             CCCCccEEEecCCcCCCCchhhccCccccEEeccCCC--CCC-c-cccCCCCCCcEEEccCC-CchhhHHHhccCCCCce
Q 047733           95 GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCE--LGD-I-AIVGDLKTLVILTLRGS-DMEKLVEEIGQLTHLRL  169 (508)
Q Consensus        95 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~--l~~-~-~~i~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~  169 (508)
                      .....|...+.++.+..++... .+++|++|-+.++.  +.. + ..|..++.|+.||+++| .+.++|+.++.+.+||.
T Consensus       521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            3455666666666665555432 33467777776664  333 2 33666777777777766 55677777777777777


Q ss_pred             EeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc---CccCCCCCc
Q 047733          170 LDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED---EKTLPRDLS  246 (508)
Q Consensus       170 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~l~  246 (508)
                      |+++++. +..+|.. +.+++.|.+|++..+.....            .+.....+++||.|.+....   .......+.
T Consensus       600 L~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~------------~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~  665 (889)
T KOG4658|consen  600 LDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRLES------------IPGILLELQSLRVLRLPRSALSNDKLLLKELE  665 (889)
T ss_pred             ccccCCC-ccccchH-HHHHHhhheecccccccccc------------ccchhhhcccccEEEeeccccccchhhHHhhh
Confidence            7777765 6677776 67777777777765543211            11233346667777665443   111112223


Q ss_pred             cCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcE
Q 047733          247 FFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKH  326 (508)
Q Consensus       247 ~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  326 (508)
                      .+++|+.+.+..... .....                    ...+.........+.+.++...+..   .....+.+|+.
T Consensus       666 ~Le~L~~ls~~~~s~-~~~e~--------------------l~~~~~L~~~~~~l~~~~~~~~~~~---~~~~~l~~L~~  721 (889)
T KOG4658|consen  666 NLEHLENLSITISSV-LLLED--------------------LLGMTRLRSLLQSLSIEGCSKRTLI---SSLGSLGNLEE  721 (889)
T ss_pred             cccchhhheeecchh-HhHhh--------------------hhhhHHHHHHhHhhhhcccccceee---cccccccCcce
Confidence            333333333321110 00000                    0011111122223333222222222   22356788888


Q ss_pred             EEEecCCCceeeeecccCCCCCCC-cCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceec
Q 047733          327 LEVVENSNLLCVVDTVDRATAPTT-AFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVF  397 (508)
Q Consensus       327 L~l~~~~~l~~i~~~~~~~~~~~~-~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  397 (508)
                      |.+.+|...+.........  ... .|+++.++.+.+|+.++...+.    .-.|+|+.|++.+|+.+.++.
T Consensus       722 L~i~~~~~~e~~~~~~~~~--~~~~~f~~l~~~~~~~~~~~r~l~~~----~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  722 LSILDCGISEIVIEWEESL--IVLLCFPNLSKVSILNCHMLRDLTWL----LFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             EEEEcCCCchhhccccccc--chhhhHHHHHHHHhhccccccccchh----hccCcccEEEEecccccccCC
Confidence            8888876543322111111  111 2667777777777766654321    234777777777777776654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.26  E-value=1.9e-11  Score=128.92  Aligned_cols=182  Identities=17%  Similarity=0.245  Sum_probs=134.1

Q ss_pred             cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733           36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS  115 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  115 (508)
                      .+++.++.|++++|.+..+|... .++|++|++.+|..            ..+|..+   ..+|+.|++++|.+..+|..
T Consensus       196 ~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L------------tsLP~~l---~~~L~~L~Ls~N~L~~LP~~  259 (754)
T PRK15370        196 CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL------------TSIPATL---PDTIQEMELSINRITELPER  259 (754)
T ss_pred             ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc------------ccCChhh---hccccEEECcCCccCcCChh
Confidence            35678999999999999888643 46999999999443            3445433   24689999999999888876


Q ss_pred             hccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcE
Q 047733          116 LRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE  194 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  194 (508)
                      +.  .+|++|++++|+++. |..+.  .+|++|++++|.++.+|..+.  .+|+.|++++|. +..+|.. +  .++|+.
T Consensus       260 l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~  329 (754)
T PRK15370        260 LP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKT  329 (754)
T ss_pred             Hh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--ccccee
Confidence            64  479999999988887 55553  589999999998888775443  478889998877 6667653 2  368889


Q ss_pred             EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733          195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD  260 (508)
Q Consensus       195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~  260 (508)
                      |.+.+|.++.             ++..+.  ++|+.|++++|....+|..+  .++|+.|.+..+.
T Consensus       330 L~Ls~N~Lt~-------------LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~  378 (754)
T PRK15370        330 LEAGENALTS-------------LPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNA  378 (754)
T ss_pred             ccccCCcccc-------------CChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCc
Confidence            9988887652             222232  58899999988877677654  3577777776443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.26  E-value=9.7e-14  Score=129.73  Aligned_cols=81  Identities=23%  Similarity=0.373  Sum_probs=41.7

Q ss_pred             cccEEeccCCC-CCC-c--cccCCCCCCcEEEccCC-Cch--hhHHHhccCCCCceEeccCCCCCCccChh-hhhcCCCC
Q 047733          121 NLQTLSLDYCE-LGD-I--AIVGDLKTLVILTLRGS-DME--KLVEEIGQLTHLRLLDLSNCFNLKVIPPN-VISSLSQL  192 (508)
Q Consensus       121 ~L~~L~l~~~~-l~~-~--~~i~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L  192 (508)
                      .|+.|.+++|. ..+ +  .....+++++.|++.++ +++  .+-..-.+|++|++|++..|..+++..-. +...+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            35666666665 333 1  23345566666666665 333  22222345666666666665545443321 23456666


Q ss_pred             cEEEeecCC
Q 047733          193 EELYIGESP  201 (508)
Q Consensus       193 ~~L~l~~~~  201 (508)
                      ++++++||.
T Consensus       219 ~~lNlSwc~  227 (483)
T KOG4341|consen  219 KYLNLSWCP  227 (483)
T ss_pred             HHhhhccCc
Confidence            666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.21  E-value=2.1e-13  Score=127.55  Aligned_cols=295  Identities=16%  Similarity=0.120  Sum_probs=167.9

Q ss_pred             CCCcEEEccCC-Cc--hhhHHHhccCCCCceEeccCCCCCCccCh-hhhhcCCCCcEEEeecCCCccccccCcCCCCccc
Q 047733          142 KTLVILTLRGS-DM--EKLVEEIGQLTHLRLLDLSNCFNLKVIPP-NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNA  217 (508)
Q Consensus       142 ~~L~~L~l~~~-~i--~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  217 (508)
                      ..|+.|.++|+ .+  ..+-....+++++++|.+.+|..+++..- ..-..+++|+++++..|....+.           
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-----------  206 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV-----------  206 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH-----------
Confidence            47889999987 22  24444556899999999999987766543 33457899999999886543111           


Q ss_pred             chh-hccCCCCccEEEEeccc---CccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhh
Q 047733          218 SLD-ELNNLSKLTSLEILIED---EKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIM  293 (508)
Q Consensus       218 ~~~-~l~~l~~L~~L~l~~~~---~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~  293 (508)
                      .+. --..+++|..++++|++   ...+......+.+++.+...+|......                     ....+.+
T Consensus       207 ~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le---------------------~l~~~~~  265 (483)
T KOG4341|consen  207 SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE---------------------ALLKAAA  265 (483)
T ss_pred             HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH---------------------HHHHHhc
Confidence            122 23457788999999887   2222222344555555544333321110                     0111122


Q ss_pred             cccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCc
Q 047733          294 QLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGP  373 (508)
Q Consensus       294 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~  373 (508)
                      ..+-+..+++..|..+++........++..|+++..++|..++..+   .|.  -....++|+.|.+..|.++++.....
T Consensus       266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~---l~a--Lg~~~~~L~~l~l~~c~~fsd~~ft~  340 (483)
T KOG4341|consen  266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV---LWA--LGQHCHNLQVLELSGCQQFSDRGFTM  340 (483)
T ss_pred             cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH---HHH--HhcCCCceEEEeccccchhhhhhhhh
Confidence            3344555555566666655433333456667777777666544211   111  22345677777777777666654333


Q ss_pred             ccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCc
Q 047733          374 LAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLP  453 (508)
Q Consensus       374 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  453 (508)
                      +. ...+.|+.+++.+|....+-.......++|.|+++.++.|..+.+--....       .........|+.+++.+||
T Consensus       341 l~-rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l-------~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  341 LG-RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL-------SSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             hh-cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh-------hhccccccccceeeecCCC
Confidence            22 456777777777776555432223446677777777776665554411110       1223345667777777777


Q ss_pred             cccccccCccccccCCccEEEEeeCCCcc
Q 047733          454 QLTSFCTGDLHFEFPSLEKLRILECPQVK  482 (508)
Q Consensus       454 ~L~~~~~~~~~~~~p~L~~L~i~~C~~l~  482 (508)
                      .+++---..+. .++.|+++++.+|.+.+
T Consensus       413 ~i~d~~Le~l~-~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  413 LITDATLEHLS-ICRNLERIELIDCQDVT  440 (483)
T ss_pred             CchHHHHHHHh-hCcccceeeeechhhhh
Confidence            77665433333 45677777777777643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=1.7e-10  Score=99.33  Aligned_cols=119  Identities=22%  Similarity=0.369  Sum_probs=43.1

Q ss_pred             cccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh-c
Q 047733           40 VCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL-R  117 (508)
Q Consensus        40 ~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~-~  117 (508)
                      ++|.|++.+|.+..+..+. .+.+|+.|++++|.+..+            +.  +..+++|+.|++++|.++.+...+ .
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l------------~~--l~~L~~L~~L~L~~N~I~~i~~~l~~   85 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL------------EG--LPGLPRLKTLDLSNNRISSISEGLDK   85 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S--------------TT------TT--EEE--SS---S-CHHHHH
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCccc------------cC--ccChhhhhhcccCCCCCCccccchHH
Confidence            4688888888887777665 577888888888544433            22  366788888888888888776544 3


Q ss_pred             cCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhhH----HHhccCCCCceEec
Q 047733          118 LFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKLV----EEIGQLTHLRLLDL  172 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp----~~~~~l~~L~~L~l  172 (508)
                      .+++|+.|++++|++.+   ...+..+++|++|++.+|.+...+    ..+..+++|+.||-
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            57888888888887765   456667778888888777665222    12445566666553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.09  E-value=4.7e-11  Score=116.01  Aligned_cols=184  Identities=23%  Similarity=0.249  Sum_probs=99.9

Q ss_pred             CCcccEEEeecCCCCC-----CCCC-CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC-
Q 047733           38 LKVCTAISLKNSNISE-----LPQV-FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL-  110 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-  110 (508)
                      ...++.+++.++.+.+     ++.. ...++++.|.+.++..+..+.     ....++ ..+..+++|+.|++++|.+. 
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~-----~~~~~~-~~l~~~~~L~~L~l~~~~~~~   95 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR-----GLQSLL-QGLTKGCGLQELDLSDNALGP   95 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcch-----HHHHHH-HHHHhcCceeEEEccCCCCCh
Confidence            3447777777777622     2221 255667777777633321100     001111 22356777777777777765 


Q ss_pred             CCchhhccCcc---ccEEeccCCCCCC------ccccCCC-CCCcEEEccCCCch-----hhHHHhccCCCCceEeccCC
Q 047733          111 PLPSSLRLFQN---LQTLSLDYCELGD------IAIVGDL-KTLVILTLRGSDME-----KLVEEIGQLTHLRLLDLSNC  175 (508)
Q Consensus       111 ~l~~~~~~l~~---L~~L~l~~~~l~~------~~~i~~l-~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~  175 (508)
                      ..+..+..+..   |++|++++|.+++      ...+..+ ++|+.|++++|.++     .++..+..+++|++|++++|
T Consensus        96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  175 (319)
T cd00116          96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN  175 (319)
T ss_pred             hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence            23344444444   7777777777653      1234455 67777777777655     34445556667777777776


Q ss_pred             CCCCc-----cChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          176 FNLKV-----IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       176 ~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      . +..     ++.. +..+++|++|++++|.+...        ....+...+..+++|+.|+++++.
T Consensus       176 ~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~--------~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         176 G-IGDAGIRALAEG-LKANCNLEVLDLNNNGLTDE--------GASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             C-CchHHHHHHHHH-HHhCCCCCEEeccCCccChH--------HHHHHHHHhcccCCCCEEecCCCc
Confidence            5 331     1111 33445777777776655411        111233344555666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.05  E-value=1.1e-11  Score=120.52  Aligned_cols=192  Identities=22%  Similarity=0.296  Sum_probs=152.9

Q ss_pred             CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      .+.....+++.|.+.++|.-. .+.-|+.+.++.            +.+..+|..+ .++..|.++||+.|+++.+|..+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~------------n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~l  140 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYH------------NCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGL  140 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHh------------ccceecchhh-hhhhHHHHhhhccchhhcCChhh
Confidence            445566677777777776543 566666677766            4444555555 78899999999999999999888


Q ss_pred             ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733          117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL  195 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  195 (508)
                      +.|+ |+.|.+++|+++. |..++.+.+|..||.+.|.+..+|..++++.+|+.|.++.|. +..+|.. +..+ .|..|
T Consensus       141 C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~l  216 (722)
T KOG0532|consen  141 CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRL  216 (722)
T ss_pred             hcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeee
Confidence            8777 8999999999888 899998999999999999999999999999999999999987 7788887 5655 49999


Q ss_pred             EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCC---ccCCCccEEEEEec
Q 047733          196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDL---SFFKMLQRYSILIG  259 (508)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l---~~~~~L~~L~i~~~  259 (508)
                      +++.|++.             .++..+.+++.|+.|-+.+|...+-|+.+   +...=.+.|.+..|
T Consensus       217 DfScNkis-------------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  217 DFSCNKIS-------------YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ecccCcee-------------ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            99999886             56788999999999999999988888766   22222345555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.04  E-value=6.4e-11  Score=115.07  Aligned_cols=162  Identities=18%  Similarity=0.159  Sum_probs=89.0

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-------CchhhccCccccEEeccCCC
Q 047733           59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-------LPSSLRLFQNLQTLSLDYCE  131 (508)
Q Consensus        59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~l~~~~  131 (508)
                      .+++|+.|.+.++.+..-       ....++.. +...+.++.++++++.+..       ++..+..+++|+.|++++|.
T Consensus        21 ~l~~L~~l~l~~~~l~~~-------~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~   92 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEE-------AAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA   92 (319)
T ss_pred             HHhhccEEeecCCCCcHH-------HHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence            556677777777221100       00112222 2456667777777776542       23445566777777777777


Q ss_pred             CCC--ccccCCCC---CCcEEEccCCCch-----hhHHHhccC-CCCceEeccCCCCCC----ccChhhhhcCCCCcEEE
Q 047733          132 LGD--IAIVGDLK---TLVILTLRGSDME-----KLVEEIGQL-THLRLLDLSNCFNLK----VIPPNVISSLSQLEELY  196 (508)
Q Consensus       132 l~~--~~~i~~l~---~L~~L~l~~~~i~-----~lp~~~~~l-~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~  196 (508)
                      +..  +..+..+.   +|++|++++|.+.     .+...+..+ ++|++|++++|....    .++.. +..+++|++|+
T Consensus        93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~  171 (319)
T cd00116          93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELN  171 (319)
T ss_pred             CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEE
Confidence            653  33333333   3777777777554     233345555 677777777776221    12222 44556777777


Q ss_pred             eecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      +.+|.+.+.        ....+...+...++|+.|+++++.
T Consensus       172 l~~n~l~~~--------~~~~l~~~l~~~~~L~~L~L~~n~  204 (319)
T cd00116         172 LANNGIGDA--------GIRALAEGLKANCNLEVLDLNNNG  204 (319)
T ss_pred             CcCCCCchH--------HHHHHHHHHHhCCCCCEEeccCCc
Confidence            777665421        111233344555677777776665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=2.3e-10  Score=98.55  Aligned_cols=108  Identities=22%  Similarity=0.314  Sum_probs=32.6

Q ss_pred             hCCCCccEEEecCCcCCCCchhhc-cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHh-ccCCCCceEe
Q 047733           94 TGMRELRVLDFARMHLLPLPSSLR-LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI-GQLTHLRLLD  171 (508)
Q Consensus        94 ~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~  171 (508)
                      .+..+++.|++.++.|+.+.. ++ .+.+|+.|++++|.++...++..+++|++|++++|.++.+...+ ..+++|++|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             --------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            355566777777777665542 33 46677777777777766666667777777777777777664444 3567777777


Q ss_pred             ccCCCCCCccCh-hhhhcCCCCcEEEeecCCCc
Q 047733          172 LSNCFNLKVIPP-NVISSLSQLEELYIGESPIM  203 (508)
Q Consensus       172 l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  203 (508)
                      +++|. +.++.. ..+..+++|+.|++.+|.+.
T Consensus        95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence            77665 433322 12566677777777666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.96  E-value=1.1e-10  Score=108.66  Aligned_cols=87  Identities=17%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             hhccCCCCccEEEEecccCccCC-CCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccce
Q 047733          220 DELNNLSKLTSLEILIEDEKTLP-RDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGI  298 (508)
Q Consensus       220 ~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L  298 (508)
                      ..++.+++|+.|++++|..+.+. .++.....+++|.+....                       .-....++...+..|
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-----------------------l~~v~~~~f~~ls~L  324 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-----------------------LEFVSSGMFQGLSGL  324 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-----------------------HHHHHHHhhhccccc
Confidence            45789999999999999866554 345666666766654322                       112233344456667


Q ss_pred             eEEEecCCCCccccccCCcCCCCCCCcEEEEec
Q 047733          299 KELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVE  331 (508)
Q Consensus       299 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  331 (508)
                      ++|++.+. .++.+.+.. ......|.+|.+-.
T Consensus       325 ~tL~L~~N-~it~~~~~a-F~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  325 KTLSLYDN-QITTVAPGA-FQTLFSLSTLNLLS  355 (498)
T ss_pred             eeeeecCC-eeEEEeccc-ccccceeeeeehcc
Confidence            77777654 444444332 23445556665544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.91  E-value=2.2e-10  Score=106.78  Aligned_cols=249  Identities=19%  Similarity=0.241  Sum_probs=151.9

Q ss_pred             CCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccCccccEEeccC-CCCCC-c-cccCCCCCCcEEEccCCCchhhH
Q 047733           83 DPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQNLQTLSLDY-CELGD-I-AIVGDLKTLVILTLRGSDMEKLV  158 (508)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~-~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp  158 (508)
                      +.+..+|..+|+.+++||+|||+.|.|+.+ |..|..++.|-.|-+.+ |+|++ + ..|+++..|+.|.+..+.+.-++
T Consensus        77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir  156 (498)
T KOG4237|consen   77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR  156 (498)
T ss_pred             CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence            667777888889999999999999999864 67888888877777766 66988 5 77888999999998888888554


Q ss_pred             -HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCC------CccccccC---cCCCCc--ccchhhcc---
Q 047733          159 -EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP------IMWGKVGG---VDGEGR--NASLDELN---  223 (508)
Q Consensus       159 -~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------~~~~~~~~---~~~~~~--~~~~~~l~---  223 (508)
                       ..+..+++|..|.+.+|. +..++...+..+.+++.+.+..+.      +.|.....   +...+.  ...+..+.   
T Consensus       157 ~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R  235 (498)
T KOG4237|consen  157 QDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR  235 (498)
T ss_pred             HHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence             557888999999888876 777777556777778877665543      32222110   000000  00000000   


Q ss_pred             --C------CCCccEE----EEecccCccCC-CCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccch
Q 047733          224 --N------LSKLTSL----EILIEDEKTLP-RDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGG  290 (508)
Q Consensus       224 --~------l~~L~~L----~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~  290 (508)
                        +      .-.++.+    .-.+......| ..++.+++|+.+++++..                       ......+
T Consensus       236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-----------------------i~~i~~~  292 (498)
T KOG4237|consen  236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-----------------------ITRIEDG  292 (498)
T ss_pred             hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-----------------------cchhhhh
Confidence              0      0001111    00011111111 124667777777776433                       1122233


Q ss_pred             hhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcc
Q 047733          291 HIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLR  364 (508)
Q Consensus       291 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~  364 (508)
                      .......+++|++... .+..+.. ....++..|+.|.+.+ ++|+.+.    ++  .-....+|.+|.+...|
T Consensus       293 aFe~~a~l~eL~L~~N-~l~~v~~-~~f~~ls~L~tL~L~~-N~it~~~----~~--aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  293 AFEGAAELQELYLTRN-KLEFVSS-GMFQGLSGLKTLSLYD-NQITTVA----PG--AFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hhcchhhhhhhhcCcc-hHHHHHH-HhhhccccceeeeecC-CeeEEEe----cc--cccccceeeeeehccCc
Confidence            3345677888888654 4444322 2346789999999999 5777652    22  22344677888876543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=4.5e-10  Score=101.02  Aligned_cols=193  Identities=18%  Similarity=0.228  Sum_probs=142.9

Q ss_pred             cCCCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCC----CcccCCCCCC--------CCChhhhhCCCCccEE
Q 047733           36 DALKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRI----PVHIANDPSR--------RIPDKFFTGMRELRVL  102 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~l~~L~~L  102 (508)
                      .+++++..+-++.+....+..+. .-|.|+++.+..--+...    |...-.+...        .....+ ...+.|..+
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~-dTWq~Ltel  289 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSA-DTWQELTEL  289 (490)
T ss_pred             HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEec-chHhhhhhc
Confidence            45788889999988876665544 567888887765322111    2111011111        111111 345789999


Q ss_pred             EecCCcCCCCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccC
Q 047733          103 DFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIP  182 (508)
Q Consensus       103 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~  182 (508)
                      |+++|.|+.+-++..-.+.++.|++++|.+..+..+..+++|+.||+++|.+.++..+=.++-+.++|.+++|. +.++.
T Consensus       290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LS  368 (490)
T KOG1259|consen  290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLS  368 (490)
T ss_pred             cccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhh
Confidence            99999999988888889999999999999888777899999999999999998887666688899999999976 77776


Q ss_pred             hhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC
Q 047733          183 PNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR  243 (508)
Q Consensus       183 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  243 (508)
                      .  +.++-+|..|++.+|++...           .-..++++++.|+.+.+.+|....++.
T Consensus       369 G--L~KLYSLvnLDl~~N~Ie~l-----------deV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  369 G--LRKLYSLVNLDLSSNQIEEL-----------DEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             h--hHhhhhheeccccccchhhH-----------HHhcccccccHHHHHhhcCCCccccch
Confidence            5  78899999999999887522           134678899999999998887555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=5.7e-10  Score=100.38  Aligned_cols=125  Identities=22%  Similarity=0.319  Sum_probs=84.0

Q ss_pred             CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      |+.++.+++++|.+..+.... -.|.+|.|++++|.+..+            ..  ...+.+|..||+++|.++++...-
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v------------~n--La~L~~L~~LDLS~N~Ls~~~Gwh  348 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV------------QN--LAELPQLQLLDLSGNLLAECVGWH  348 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee------------hh--hhhcccceEeecccchhHhhhhhH
Confidence            566777777777776665443 567777777777433322            21  256777777777777776665555


Q ss_pred             ccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhH--HHhccCCCCceEeccCCC
Q 047733          117 RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLV--EEIGQLTHLRLLDLSNCF  176 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~  176 (508)
                      .++-+.++|.++.|.+.+.++++++++|.+||+++|.|+.+.  .++++++.|+++.+.+|+
T Consensus       349 ~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            566677777777777666777777777777777777777553  456777777777777766

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.75  E-value=8.4e-09  Score=103.29  Aligned_cols=145  Identities=28%  Similarity=0.413  Sum_probs=83.6

Q ss_pred             CccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCC
Q 047733           98 ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCF  176 (508)
Q Consensus        98 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~  176 (508)
                      +|+.|++++|++..+|..++.+++|+.|++++|++++ +...+.+..|+.|+++++.+..+|..+.....|+++.++.|.
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence            6666666666666665556666666666666666665 444446666666666666666666555555556666666654


Q ss_pred             CCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEE
Q 047733          177 NLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSI  256 (508)
Q Consensus       177 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i  256 (508)
                      .+. .+.. +..+.++..+.+..+...             ..+..++.+++++.|+++.+....++. +....+++.+.+
T Consensus       221 ~~~-~~~~-~~~~~~l~~l~l~~n~~~-------------~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~  284 (394)
T COG4886         221 IIE-LLSS-LSNLKNLSGLELSNNKLE-------------DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDL  284 (394)
T ss_pred             cee-cchh-hhhcccccccccCCceee-------------eccchhccccccceecccccccccccc-ccccCccCEEec
Confidence            222 2222 455555555555544433             113445566667777766666555555 555666666655


Q ss_pred             Ee
Q 047733          257 LI  258 (508)
Q Consensus       257 ~~  258 (508)
                      .+
T Consensus       285 s~  286 (394)
T COG4886         285 SG  286 (394)
T ss_pred             cC
Confidence            43

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.73  E-value=9.7e-09  Score=102.83  Aligned_cols=175  Identities=26%  Similarity=0.390  Sum_probs=139.7

Q ss_pred             CcccEEEeecCCCCCCCCCCCCC--CCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           39 KVCTAISLKNSNISELPQVFECP--QLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      +.++.+++.++.+.+++......  +|+.|++.+|.++.+            |..+ ..++.|+.|++++|++..+|...
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l------------~~~~-~~l~~L~~L~l~~N~l~~l~~~~  182 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL------------PSPL-RNLPNLKNLDLSFNDLSDLPKLL  182 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhh------------hhhh-hccccccccccCCchhhhhhhhh
Confidence            46888888888888888766443  899998888544444            3333 78999999999999999999877


Q ss_pred             ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733          117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL  195 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  195 (508)
                      +..+.|+.|+++++++++ |..++....|+++.+++|.+...+..+.++.++..+.+.++. +...+.. ++.+++++.|
T Consensus       183 ~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L  260 (394)
T COG4886         183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETL  260 (394)
T ss_pred             hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hcccccccee
Confidence            799999999999999998 666677888999999999766677778889999999887766 5554443 6889999999


Q ss_pred             EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC
Q 047733          196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP  242 (508)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  242 (508)
                      ++..+.++              .+..++.+.+++.|+++++.....+
T Consensus       261 ~~s~n~i~--------------~i~~~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         261 DLSNNQIS--------------SISSLGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             cccccccc--------------ccccccccCccCEEeccCccccccc
Confidence            99998876              2233788899999999987744433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=6.7e-09  Score=98.34  Aligned_cols=131  Identities=20%  Similarity=0.185  Sum_probs=77.3

Q ss_pred             hccCccccEEeccCCCCCC-c--cccCCCCCCcEEEccCCCch---hhHHHhccCCCCceEeccCCCCCCccChhhhhcC
Q 047733          116 LRLFQNLQTLSLDYCELGD-I--AIVGDLKTLVILTLRGSDME---KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSL  189 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  189 (508)
                      -.++.+|+.+.++++.+.. +  .....+++++.||++.|-+.   .+-..+.++++|+.|+++.|....-.....-..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            4466777777777777665 2  35566778888888877555   3334456778888888877652222222112356


Q ss_pred             CCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc-CccCCCCCccCCCccEEEEE
Q 047733          190 SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED-EKTLPRDLSFFKMLQRYSIL  257 (508)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~  257 (508)
                      +.|+.|.+..|.++|..           +..-+..+|+|+.|.+.+|. .......-..++.|+.|+++
T Consensus       197 ~~lK~L~l~~CGls~k~-----------V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKD-----------VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             hhhheEEeccCCCCHHH-----------HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence            67777778777777553           33445566777777777663 11111111234455555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.69  E-value=8.9e-10  Score=107.39  Aligned_cols=160  Identities=23%  Similarity=0.314  Sum_probs=134.7

Q ss_pred             CCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHh
Q 047733           83 DPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEI  161 (508)
Q Consensus        83 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~  161 (508)
                      +....+|..+ ..+..|..+.++.|.+..+|..++++..|.+++++.|+++. |..++.++ |+.|-+++|+++.+|..+
T Consensus        85 NR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~i  162 (722)
T KOG0532|consen   85 NRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEI  162 (722)
T ss_pred             cccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCccc
Confidence            4555666665 66788999999999999999999999999999999999887 77777665 788888999999999999


Q ss_pred             ccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC
Q 047733          162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL  241 (508)
Q Consensus       162 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  241 (508)
                      +.+..|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|++.             .++.++..+ .|..|++++|....+
T Consensus       163 g~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~-------------~lp~El~~L-pLi~lDfScNkis~i  226 (722)
T KOG0532|consen  163 GLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE-------------DLPEELCSL-PLIRLDFSCNKISYL  226 (722)
T ss_pred             ccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-------------hCCHHHhCC-ceeeeecccCceeec
Confidence            988999999999988 7788887 789999999998888775             455677755 588999999999999


Q ss_pred             CCCCccCCCccEEEEEecC
Q 047733          242 PRDLSFFKMLQRYSILIGD  260 (508)
Q Consensus       242 ~~~l~~~~~L~~L~i~~~~  260 (508)
                      |..+..+..|+.|.+....
T Consensus       227 Pv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             chhhhhhhhheeeeeccCC
Confidence            9999899999988876443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=5.7e-09  Score=98.79  Aligned_cols=203  Identities=22%  Similarity=0.211  Sum_probs=100.0

Q ss_pred             CCcccEEEeecCCCCCCCC--CC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch
Q 047733           38 LKVCTAISLKNSNISELPQ--VF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS  114 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  114 (508)
                      .+++|.+++.++.+...+.  .. .|++++.|+++.|..-.+          .....+...+++|+.|+++.|.+.....
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw----------~~v~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW----------FPVLKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH----------HHHHHHHHhcccchhcccccccccCCcc
Confidence            4566777777666655442  22 667777777766322111          0112334566677777777666542211


Q ss_pred             h--hccCccccEEeccCCCCCC--c-cccCCCCCCcEEEccCC-CchhhHHHhccCCCCceEeccCCCCCCccCh-hhhh
Q 047733          115 S--LRLFQNLQTLSLDYCELGD--I-AIVGDLKTLVILTLRGS-DMEKLVEEIGQLTHLRLLDLSNCFNLKVIPP-NVIS  187 (508)
Q Consensus       115 ~--~~~l~~L~~L~l~~~~l~~--~-~~i~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~  187 (508)
                      +  -..+.+|+.|.++.|.++.  + .....+++|+.|++.+| .+........-+..|++|+|++|+.+ +.+. ...+
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~  268 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG  268 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc
Confidence            1  1145566666666666553  2 34445666666666666 22211111223345666666666532 2221 1245


Q ss_pred             cCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC--CCCccCCCccEEEEE
Q 047733          188 SLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP--RDLSFFKMLQRYSIL  257 (508)
Q Consensus       188 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~i~  257 (508)
                      .++.|+.|+++.|.+..-.      .............++|+.|++..|....++  ..+..+++|+.|.+.
T Consensus       269 ~l~~L~~Lnls~tgi~si~------~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIASIA------EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             cccchhhhhccccCcchhc------CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            6666666666665543111      011122223345556666666666542222  233445555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=2.1e-09  Score=96.73  Aligned_cols=84  Identities=24%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             CCcEEEccCCCch--hhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchh
Q 047733          143 TLVILTLRGSDME--KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLD  220 (508)
Q Consensus       143 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  220 (508)
                      .||+||+++..++  .+...+.+|.+|+.|.+.++..-+.+... +.+-.+|+.|+++.|.-.          +..+...
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~----------t~n~~~l  254 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGF----------TENALQL  254 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccccc----------chhHHHH
Confidence            4778888877666  44445667777777777776633334443 566677777777765421          1112333


Q ss_pred             hccCCCCccEEEEeccc
Q 047733          221 ELNNLSKLTSLEILIED  237 (508)
Q Consensus       221 ~l~~l~~L~~L~l~~~~  237 (508)
                      -++.++.|+.|+++|+.
T Consensus       255 l~~scs~L~~LNlsWc~  271 (419)
T KOG2120|consen  255 LLSSCSRLDELNLSWCF  271 (419)
T ss_pred             HHHhhhhHhhcCchHhh
Confidence            45677777777777775

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=5.4e-09  Score=94.17  Aligned_cols=39  Identities=18%  Similarity=0.184  Sum_probs=25.5

Q ss_pred             cccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCC
Q 047733          294 QLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENS  333 (508)
Q Consensus       294 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  333 (508)
                      .++.|++|.++.|.++..... ......|.|.+|++.+|-
T Consensus       336 kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  336 KFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence            567788888877766543221 234667888888887764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=4.3e-07  Score=64.09  Aligned_cols=56  Identities=29%  Similarity=0.408  Sum_probs=32.1

Q ss_pred             CccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCC
Q 047733           98 ELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSD  153 (508)
Q Consensus        98 ~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~  153 (508)
                      +|++|++++|+++.+| ..|..+++|++|++++|.++.  +..+..+++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4556666666655555 345556666666666655554  3455566666666665554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.37  E-value=5.5e-08  Score=97.68  Aligned_cols=187  Identities=21%  Similarity=0.286  Sum_probs=111.2

Q ss_pred             CcccEEEeecCCCCCC-CCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733           39 KVCTAISLKNSNISEL-PQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR  117 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  117 (508)
                      ..+..++++.+.+..+ ..+..+++|+.|++.+|.+..+..            . ...+.+|++|++++|.|+.+.. +.
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~------------~-l~~~~~L~~L~ls~N~I~~i~~-l~  137 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN------------L-LSSLVNLQVLDLSFNKITKLEG-LS  137 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc------------c-hhhhhcchheeccccccccccc-hh
Confidence            4455555566655542 224467777777777744433322            1 2567778888888887776543 55


Q ss_pred             cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733          118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY  196 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  196 (508)
                      .+..|+.|++.+|.++.+..+..+..|+.+++++|.+..+... ...+.+++.+.+..|. +..+..  +..+..+..++
T Consensus       138 ~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~  214 (414)
T KOG0531|consen  138 TLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLS  214 (414)
T ss_pred             hccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhh
Confidence            6666777778777777766666677777788877777766543 4667777777777765 444433  23344444445


Q ss_pred             eecCCCccccccCcCCCCcccchhhccCCCC--ccEEEEecccCccCCCCCccCCCccEEEE
Q 047733          197 IGESPIMWGKVGGVDGEGRNASLDELNNLSK--LTSLEILIEDEKTLPRDLSFFKMLQRYSI  256 (508)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~l~~~~~L~~L~i  256 (508)
                      +..+.+.              .+.++..+..  |+.+++.++.....+..+..+..+..+.+
T Consensus       215 l~~n~i~--------------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~  262 (414)
T KOG0531|consen  215 LLDNKIS--------------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDL  262 (414)
T ss_pred             cccccce--------------eccCcccchhHHHHHHhcccCccccccccccccccccccch
Confidence            5555543              2233333333  77888887776555443434444444443

>PLN03150 hypothetical protein; Provisional

Probab=98.32  E-value=1.6e-06  Score=91.39  Aligned_cols=82  Identities=24%  Similarity=0.352  Sum_probs=51.4

Q ss_pred             ccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733          122 LQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG  198 (508)
Q Consensus       122 L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  198 (508)
                      ++.|++++|.++.  |..++++.+|+.|++++|.+. .+|..+..+++|+.|++++|.....+|.. ++.+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence            5566666666554  456666666666666666665 56666666666666666666644455554 5666666666666


Q ss_pred             cCCCcc
Q 047733          199 ESPIMW  204 (508)
Q Consensus       199 ~~~~~~  204 (508)
                      +|.+.+
T Consensus       499 ~N~l~g  504 (623)
T PLN03150        499 GNSLSG  504 (623)
T ss_pred             CCcccc
Confidence            666553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.30  E-value=5.6e-07  Score=63.48  Aligned_cols=60  Identities=27%  Similarity=0.506  Sum_probs=46.0

Q ss_pred             CCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCC
Q 047733           61 PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCEL  132 (508)
Q Consensus        61 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l  132 (508)
                      |+|++|++.+            +.+..+|...|.++++|++|++++|.++.++ ..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~------------n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSN------------NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETS------------STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCC------------CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4677788877            3455566666788888888888888888766 5778888888888888864

...

>PLN03150 hypothetical protein; Provisional

Probab=98.27  E-value=2.6e-06  Score=89.70  Aligned_cols=104  Identities=20%  Similarity=0.314  Sum_probs=89.1

Q ss_pred             CccEEEecCCcCC-CCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEecc
Q 047733           98 ELRVLDFARMHLL-PLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLS  173 (508)
Q Consensus        98 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~  173 (508)
                      .++.|+|+++.+. .+|..++.+++|+.|++++|.++.  |..++.+.+|+.|++++|.+. .+|..+.++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999999987 688899999999999999999885  678999999999999999887 788899999999999999


Q ss_pred             CCCCCCccChhhhhc-CCCCcEEEeecCCC
Q 047733          174 NCFNLKVIPPNVISS-LSQLEELYIGESPI  202 (508)
Q Consensus       174 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~  202 (508)
                      +|.....+|.. +.. ..++..+++.+|..
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCCcc
Confidence            99866778876 443 45677888877654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.23  E-value=7.5e-08  Score=88.90  Aligned_cols=208  Identities=17%  Similarity=0.193  Sum_probs=141.5

Q ss_pred             CCCcccEEEeecCCCCC-----CCC-CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChh------hhhCCCCccEEEe
Q 047733           37 ALKVCTAISLKNSNISE-----LPQ-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDK------FFTGMRELRVLDF  104 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~L~~L~l  104 (508)
                      .+..++.+++++|.+..     +.. +.+-++|+..++++...+++-        ..+|..      .....++|+++||
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~--------~Ei~e~L~~l~~aL~~~~~L~~ldL   99 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLK--------DEIPEALKMLSKALLGCPKLQKLDL   99 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcH--------HHHHHHHHHHHHHHhcCCceeEeec
Confidence            46789999999999831     222 226779999999885554442        223321      2256779999999


Q ss_pred             cCCcCC-C----CchhhccCccccEEeccCCCCCC-c-c-------------ccCCCCCCcEEEccCCCch-----hhHH
Q 047733          105 ARMHLL-P----LPSSLRLFQNLQTLSLDYCELGD-I-A-------------IVGDLKTLVILTLRGSDME-----KLVE  159 (508)
Q Consensus       105 ~~~~~~-~----l~~~~~~l~~L~~L~l~~~~l~~-~-~-------------~i~~l~~L~~L~l~~~~i~-----~lp~  159 (508)
                      |+|-+. .    +-..+.++..|+.|.|.+|.+.. - .             -+++-++|+.+...+|.+.     .+..
T Consensus       100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~  179 (382)
T KOG1909|consen  100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE  179 (382)
T ss_pred             cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence            999886 2    33456678899999999997653 1 1             2456789999999999776     4445


Q ss_pred             HhccCCCCceEeccCCCCCCc---cChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecc
Q 047733          160 EIGQLTHLRLLDLSNCFNLKV---IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIE  236 (508)
Q Consensus       160 ~~~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  236 (508)
                      .+...+.|+.+.++.|.....   +....+..+++|++|++..|.++..        ........+..+++|+.+++++|
T Consensus       180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e--------gs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE--------GSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH--------HHHHHHHHhcccchheeeccccc
Confidence            567778999999988762221   1111267899999999999887632        23345667888889999999887


Q ss_pred             cCcc-----CCCCC-ccCCCccEEEEEecC
Q 047733          237 DEKT-----LPRDL-SFFKMLQRYSILIGD  260 (508)
Q Consensus       237 ~~~~-----~~~~l-~~~~~L~~L~i~~~~  260 (508)
                      ....     +...+ ...++|+.+.+.++.
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcch
Confidence            6221     11222 346777777665433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.10  E-value=1.1e-06  Score=92.26  Aligned_cols=59  Identities=27%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             hhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCC
Q 047733           93 FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGS  152 (508)
Q Consensus        93 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~  152 (508)
                      +.++++|+.||+|+++++.+ ..++++++|+.|.+++=.+..   ...+..+.+|+.||++..
T Consensus       169 c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            34555556666665555554 345555555555555544432   244555555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.08  E-value=1.1e-06  Score=81.32  Aligned_cols=202  Identities=19%  Similarity=0.261  Sum_probs=130.7

Q ss_pred             CcccEEEeecCCC----CCCCC--------CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCC---hhhhhCCCCccEEE
Q 047733           39 KVCTAISLKNSNI----SELPQ--------VFECPQLKYFHIANDPSRRIPVHIANDPSRRIP---DKFFTGMRELRVLD  103 (508)
Q Consensus        39 ~~lr~L~l~~~~~----~~l~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~  103 (508)
                      +.+|+.+++.--.    +++|+        +..+++|++|++++|           ......+   ..+...+..|+.|.
T Consensus        58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-----------A~G~~g~~~l~~ll~s~~~L~eL~  126 (382)
T KOG1909|consen   58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-----------AFGPKGIRGLEELLSSCTDLEELY  126 (382)
T ss_pred             ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-----------ccCccchHHHHHHHHhccCHHHHh
Confidence            3577777764322    33442        227889999999984           2222222   23346788899999


Q ss_pred             ecCCcCCCC--------------chhhccCccccEEeccCCCCCC-c-----cccCCCCCCcEEEccCCCch-----hhH
Q 047733          104 FARMHLLPL--------------PSSLRLFQNLQTLSLDYCELGD-I-----AIVGDLKTLVILTLRGSDME-----KLV  158 (508)
Q Consensus       104 l~~~~~~~l--------------~~~~~~l~~L~~L~l~~~~l~~-~-----~~i~~l~~L~~L~l~~~~i~-----~lp  158 (508)
                      +.+|.++..              ..-...-+.||++...+|++-+ +     ..+...+.|+.+.+++|.|.     .+.
T Consensus       127 L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~  206 (382)
T KOG1909|consen  127 LNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA  206 (382)
T ss_pred             hhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHH
Confidence            998887521              1123344578999888888654 2     34566788999999888664     345


Q ss_pred             HHhccCCCCceEeccCCCCCCccCh----hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhcc-CCCCccEEEE
Q 047733          159 EEIGQLTHLRLLDLSNCFNLKVIPP----NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELN-NLSKLTSLEI  233 (508)
Q Consensus       159 ~~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l  233 (508)
                      ..+.++++|+.|||++|. ++....    ..++.+++|+.+++..|.+.        ..+..++...+. ..++|+.+.+
T Consensus       207 eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~--------~~Ga~a~~~al~~~~p~L~vl~l  277 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLE--------NEGAIAFVDALKESAPSLEVLEL  277 (382)
T ss_pred             HHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccc--------cccHHHHHHHHhccCCCCceecc
Confidence            667889999999998876 332211    13667888999999888876        334445555554 3578889998


Q ss_pred             ecccCcc-----CCCCCccCCCccEEEEEecC
Q 047733          234 LIEDEKT-----LPRDLSFFKMLQRYSILIGD  260 (508)
Q Consensus       234 ~~~~~~~-----~~~~l~~~~~L~~L~i~~~~  260 (508)
                      .+|....     +...+...+.|..|.+.++.
T Consensus       278 ~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  278 AGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             CcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            8876321     12223447778888877555

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=7.8e-07  Score=80.50  Aligned_cols=208  Identities=17%  Similarity=0.184  Sum_probs=111.7

Q ss_pred             cccEEeccCCCCCC---ccccC-CCCCCcEEEccCCCch---hhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCc
Q 047733          121 NLQTLSLDYCELGD---IAIVG-DLKTLVILTLRGSDME---KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLE  193 (508)
Q Consensus       121 ~L~~L~l~~~~l~~---~~~i~-~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  193 (508)
                      .++.+.+.+|.+..   ...++ .+..++.+|+.+|.+.   ++...+.+++.|++|++++|+....+... -....+|+
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~  124 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLR  124 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceE
Confidence            44555666776553   33333 5678888999998776   55566789999999999988733333221 12556889


Q ss_pred             EEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC---CC-ccCCCccEEEEEecCcccCCCCCC
Q 047733          194 ELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR---DL-SFFKMLQRYSILIGDQWAWDSPSD  269 (508)
Q Consensus       194 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~l-~~~~~L~~L~i~~~~~~~~~~~~~  269 (508)
                      .|.+.++++.|...           -..+..++.+++|.++.|....+-.   .. .-.+.++.++...|....|..   
T Consensus       125 ~lVLNgT~L~w~~~-----------~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~---  190 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQS-----------TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN---  190 (418)
T ss_pred             EEEEcCCCCChhhh-----------hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHH---
Confidence            99998888877642           2345566667777666553111000   00 011122222222222111110   


Q ss_pred             CccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCC
Q 047733          270 DISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPT  349 (508)
Q Consensus       270 ~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~  349 (508)
                                        .......||++..+.+..|+--+ ....-....+|.+--|++.. +++.++    +... +.
T Consensus       191 ------------------~~~l~r~Fpnv~sv~v~e~PlK~-~s~ek~se~~p~~~~LnL~~-~~idsw----asvD-~L  245 (418)
T KOG2982|consen  191 ------------------KNKLSRIFPNVNSVFVCEGPLKT-ESSEKGSEPFPSLSCLNLGA-NNIDSW----ASVD-AL  245 (418)
T ss_pred             ------------------HHhHHhhcccchheeeecCcccc-hhhcccCCCCCcchhhhhcc-cccccH----HHHH-HH
Confidence                              11123357777777777664222 11111224466666666655 333322    1111 55


Q ss_pred             CcCcCcceeeccCcccccc
Q 047733          350 TAFPVLESLFLRDLRNLEK  368 (508)
Q Consensus       350 ~~~p~L~~L~l~~c~~l~~  368 (508)
                      ..||+|.-|.+.+.|-+..
T Consensus       246 n~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  246 NGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             cCCchhheeeccCCccccc
Confidence            6778888888777664433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.06  E-value=3.5e-08  Score=99.10  Aligned_cols=104  Identities=28%  Similarity=0.338  Sum_probs=50.9

Q ss_pred             hCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHHhccCCCCceEe
Q 047733           94 TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLD  171 (508)
Q Consensus        94 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~  171 (508)
                      .-++.|+.|||++|++.++- .+..|++|++||+++|.++. | -....+. |+.|.+++|.++.+ .++.++.+|+.||
T Consensus       184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccc
Confidence            44555555566665555443 34555555556665555544 2 1111222 55555555555554 2455555566666


Q ss_pred             ccCCCCCCccCh-hhhhcCCCCcEEEeecCC
Q 047733          172 LSNCFNLKVIPP-NVISSLSQLEELYIGESP  201 (508)
Q Consensus       172 l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~  201 (508)
                      +++|- +..... ..+..+..|++|++.+|.
T Consensus       261 lsyNl-l~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  261 LSYNL-LSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence            55543 211111 114445555555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.02  E-value=7.3e-06  Score=52.98  Aligned_cols=38  Identities=32%  Similarity=0.513  Sum_probs=24.7

Q ss_pred             CCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC
Q 047733           97 RELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD  134 (508)
Q Consensus        97 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~  134 (508)
                      ++|++|++++|.++.+|..++++++|++|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            35677777777777766666777777777777776665

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.93  E-value=1.6e-06  Score=87.07  Aligned_cols=170  Identities=21%  Similarity=0.340  Sum_probs=118.9

Q ss_pred             cCCCcccEEEeecCCCCCCCC-CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch
Q 047733           36 DALKVCTAISLKNSNISELPQ-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS  114 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  114 (508)
                      ..++++..+++..|.+..+.. ...+++|+.|++++|.++.+..              +..+..|+.|++++|.++.+..
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--------------l~~l~~L~~L~l~~N~i~~~~~  157 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--------------LSTLTLLKELNLSGNLISDISG  157 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--------------hhhccchhhheeccCcchhccC
Confidence            457889999999999998888 6689999999999966555522              3577779999999999987654


Q ss_pred             hhccCccccEEeccCCCCCCccc--cCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCC-
Q 047733          115 SLRLFQNLQTLSLDYCELGDIAI--VGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ-  191 (508)
Q Consensus       115 ~~~~l~~L~~L~l~~~~l~~~~~--i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~-  191 (508)
                       +..++.|+.+++++|.+.....  ...+..++.+.+.+|.+..+. .+..+..+..+++..+. +..+..  +..+.. 
T Consensus       158 -~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~  232 (414)
T KOG0531|consen  158 -LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVML  232 (414)
T ss_pred             -CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhH
Confidence             5568899999999999887544  688999999999999776442 23333344444555544 333322  223333 


Q ss_pred             -CcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          192 -LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       192 -L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                       |+.+++.++.+...             ..++..+.++..|++..+.
T Consensus       233 ~L~~l~l~~n~i~~~-------------~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  233 HLRELYLSGNRISRS-------------PEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             HHHHHhcccCccccc-------------cccccccccccccchhhcc
Confidence             77777777766511             1345556666666665544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.91  E-value=1.1e-05  Score=85.08  Aligned_cols=103  Identities=19%  Similarity=0.355  Sum_probs=55.3

Q ss_pred             CCccEEEecCCcCC--CCchhhc-cCccccEEeccCCCCCC--c-cccCCCCCCcEEEccCCCchhhHHHhccCCCCceE
Q 047733           97 RELRVLDFARMHLL--PLPSSLR-LFQNLQTLSLDYCELGD--I-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLL  170 (508)
Q Consensus        97 ~~L~~L~l~~~~~~--~l~~~~~-~l~~L~~L~l~~~~l~~--~-~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L  170 (508)
                      .+|++||++|.+.-  .=|..++ .+|.|+.|.+.+-.+..  . ....++++|..||++++.++.+ .+++++++|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            55666666665331  1222333 46666666666655332  2 3344566666666666666655 456666666666


Q ss_pred             eccCCCCCCccC-hhhhhcCCCCcEEEeecCC
Q 047733          171 DLSNCFNLKVIP-PNVISSLSQLEELYIGESP  201 (508)
Q Consensus       171 ~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~  201 (508)
                      .+++-. +.... -..+..+++|+.|+++...
T Consensus       201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             hccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence            665533 22111 1114566666666666543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.78  E-value=6e-07  Score=92.49  Aligned_cols=168  Identities=18%  Similarity=0.218  Sum_probs=76.9

Q ss_pred             ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCccc---cccccc
Q 047733          295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRN---LEKICR  371 (508)
Q Consensus       295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~---l~~~~~  371 (508)
                      +++|++|.+.+|..+++.........++.|++|+++.|..+++-    .... ....+|+|+.|.+..+..   +++...
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~----~l~~-~~~~c~~l~~l~~~~~~~c~~l~~~~l  342 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS----GLEA-LLKNCPNLRELKLLSLNGCPSLTDLSL  342 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH----HHHH-HHHhCcchhhhhhhhcCCCccHHHHHH
Confidence            55666666666655554443333455666666666666554210    0000 111245555544443332   322211


Q ss_pred             Cccccccc-ccCCeEEEcCCCCcceecchhhhhccCCCc-EEeeccccch-hhhhccccCCcCCCCCCceeeccccCeeE
Q 047733          372 GPLAAESF-CQLRDMRVNGCDKLKNVFPLVIGRGLQQLQ-FIEVTECQNL-DVIFAAERGDESSNSNTQVIELTQLTILE  448 (508)
Q Consensus       372 ~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~L-~~i~~~~~~~~~~~~~~~~~~~~~L~~L~  448 (508)
                      .... ... -.+..+.+.+|+.++++.. .... ..... .+.+.+|+.+ .++..            -...+..++.|.
T Consensus       343 ~~~~-~~~~d~~~~~~~~~~~~l~~~~l-~~~~-~~~~~~~~~l~gc~~l~~~l~~------------~~~~~~~l~~L~  407 (482)
T KOG1947|consen  343 SGLL-TLTSDDLAELILRSCPKLTDLSL-SYCG-ISDLGLELSLRGCPNLTESLEL------------RLCRSDSLRVLN  407 (482)
T ss_pred             HHhh-ccCchhHhHHHHhcCCCcchhhh-hhhh-ccCcchHHHhcCCcccchHHHH------------HhccCCccceEe
Confidence            0000 001 1344444444444444321 1111 12222 4555666666 22221            111233377888


Q ss_pred             cCCCccccccccCccccccCCccEEEEeeCCCcc
Q 047733          449 LCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVK  482 (508)
Q Consensus       449 l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~l~  482 (508)
                      +..|...+..........+..++.+++.+|+..+
T Consensus       408 l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  408 LSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT  441 (482)
T ss_pred             cccCccccccchHHHhhhhhccccCCccCccccc
Confidence            8888777665444333225667777777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.76  E-value=3.4e-05  Score=49.86  Aligned_cols=38  Identities=32%  Similarity=0.396  Sum_probs=20.4

Q ss_pred             CCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCcc
Q 047733          143 TLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVI  181 (508)
Q Consensus       143 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~  181 (508)
                      +|++|++++|.++++|..+.+|++|++|++++|. +.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence            4555666666555555555566666666666554 4443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.76  E-value=4.3e-05  Score=65.64  Aligned_cols=62  Identities=23%  Similarity=0.301  Sum_probs=27.3

Q ss_pred             hCCCCccEEEecCCcCCCCchhhcc-CccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCch
Q 047733           94 TGMRELRVLDFARMHLLPLPSSLRL-FQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDME  155 (508)
Q Consensus        94 ~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~  155 (508)
                      ..++.|..|.+..|.|..+-..+.. +++|+.|.+.+|.+.+   ...+..++.|++|.+-+|.++
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence            3444455555555544443333332 3334445554444332   233444444444444444433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.73  E-value=1.1e-06  Score=88.61  Aligned_cols=157  Identities=20%  Similarity=0.222  Sum_probs=90.3

Q ss_pred             CCCcccEEEeecCCCCCCCCCCC-CCCCcEEEcCCCC--CCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           37 ALKVCTAISLKNSNISELPQVFE-CPQLKYFHIANDP--SRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~~~-~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      -+..+|+|-+.++.+..+.-+.. -..|+.|....--  .+++-.    ...+.+.++.  ...+|.+.++++|.+..+-
T Consensus       107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~a----scggd~~ns~--~Wn~L~~a~fsyN~L~~mD  180 (1096)
T KOG1859|consen  107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFA----SCGGDISNSP--VWNKLATASFSYNRLVLMD  180 (1096)
T ss_pred             cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHH----Hhccccccch--hhhhHhhhhcchhhHHhHH
Confidence            36789999999998854433221 1244444433200  000000    0111111111  1245666677777766666


Q ss_pred             hhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCC
Q 047733          114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL  192 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  192 (508)
                      .++.-++.|+.|+|++|++++...+..+++|++|||++|.+..+|.. ...+ .|+.|++++|. ++.+-.  +.++.+|
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g--ie~LksL  256 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG--IENLKSL  256 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--HHhhhhh
Confidence            66666777777777777777655677777777777777777766632 2223 37777777766 555544  5677777


Q ss_pred             cEEEeecCCCc
Q 047733          193 EELYIGESPIM  203 (508)
Q Consensus       193 ~~L~l~~~~~~  203 (508)
                      +.|+++.|-+.
T Consensus       257 ~~LDlsyNll~  267 (1096)
T KOG1859|consen  257 YGLDLSYNLLS  267 (1096)
T ss_pred             hccchhHhhhh
Confidence            77777776554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=6.8e-05  Score=72.93  Aligned_cols=130  Identities=12%  Similarity=0.159  Sum_probs=81.4

Q ss_pred             CCCCCcEEEEecCCCceeeeecccCCCCCCCcCc-CcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecc
Q 047733          320 GFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFP-VLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFP  398 (508)
Q Consensus       320 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p-~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  398 (508)
                      .+++++.|++++| .++.++           .+| +|++|.+.+|..++.++.     .-.++|++|++.+|..+..+| 
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP-----------~LP~sLtsL~Lsnc~nLtsLP~-----~LP~nLe~L~Ls~Cs~L~sLP-  111 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLP-----------VLPNELTEITIENCNNLTTLPG-----SIPEGLEKLTVCHCPEISGLP-  111 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccC-----------CCCCCCcEEEccCCCCcccCCc-----hhhhhhhheEccCcccccccc-
Confidence            3689999999998 677653           234 699999999999877653     123689999999998887664 


Q ss_pred             hhhhhccCCCcEEeecc--ccchhhhhcc----ccCCcCCCCCCc--eeeccccCeeEcCCCccccccccCccccccCCc
Q 047733          399 LVIGRGLQQLQFIEVTE--CQNLDVIFAA----ERGDESSNSNTQ--VIELTQLTILELCYLPQLTSFCTGDLHFEFPSL  470 (508)
Q Consensus       399 ~~~~~~l~~L~~L~i~~--c~~L~~i~~~----~~~~~~~~~~~~--~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L  470 (508)
                             ++|+.|++.+  |..+..++..    ............  ....++|++|.+.+|..+. ++. .+.   ++|
T Consensus       112 -------~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~-~LP---~SL  179 (426)
T PRK15386        112 -------ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE-KLP---ESL  179 (426)
T ss_pred             -------cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccc-ccc---ccC
Confidence                   3577777753  2233333221    000000000001  1122578999999987663 332 222   589


Q ss_pred             cEEEEeeCC
Q 047733          471 EKLRILECP  479 (508)
Q Consensus       471 ~~L~i~~C~  479 (508)
                      +.|++..+.
T Consensus       180 k~L~ls~n~  188 (426)
T PRK15386        180 QSITLHIEQ  188 (426)
T ss_pred             cEEEecccc
Confidence            999987653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.72  E-value=1.8e-06  Score=88.91  Aligned_cols=121  Identities=17%  Similarity=0.174  Sum_probs=55.4

Q ss_pred             ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecC-CCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCc
Q 047733          295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVEN-SNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGP  373 (508)
Q Consensus       295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~  373 (508)
                      .++|+.+.+.+|..+++.........++.|+.|++.+| ..+..... ....  ....+++|+.|.+..|..+++.....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~--~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-LLLL--LLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-Hhhh--hhhhcCCcCccchhhhhccCchhHHH
Confidence            45566666655555554322122244556666665542 22111100 0000  12234555666665555444332111


Q ss_pred             ccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccch
Q 047733          374 LAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNL  419 (508)
Q Consensus       374 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L  419 (508)
                      +. ..+++|++|.+.+|..+++.....+...+++|++|++++|..+
T Consensus       264 l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  264 LA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            11 2255666666555655555444444555566666666665554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.67  E-value=0.00017  Score=70.26  Aligned_cols=57  Identities=12%  Similarity=0.180  Sum_probs=34.8

Q ss_pred             CCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccc-cccccCccccccCCccEEEEeeCCCc
Q 047733          406 QQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQL-TSFCTGDLHFEFPSLEKLRILECPQV  481 (508)
Q Consensus       406 ~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~~~~~~~~~~p~L~~L~i~~C~~l  481 (508)
                      ++|++|.+.+|..+. .            +..  ..++|+.|.+..+... ..+....+.   +.+ .|++.+|.++
T Consensus       156 sSLk~L~Is~c~~i~-L------------P~~--LP~SLk~L~ls~n~~~sLeI~~~sLP---~nl-~L~f~n~lkL  213 (426)
T PRK15386        156 PSLKTLSLTGCSNII-L------------PEK--LPESLQSITLHIEQKTTWNISFEGFP---DGL-DIDLQNSVLL  213 (426)
T ss_pred             CcccEEEecCCCccc-C------------ccc--ccccCcEEEecccccccccCcccccc---ccc-Eechhhhccc
Confidence            589999999988552 1            111  2368999999875311 122222222   456 8888888654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.65  E-value=3.4e-06  Score=67.63  Aligned_cols=108  Identities=15%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             ccEEEeecCCCCCCCC----CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           41 CTAISLKNSNISELPQ----VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      .-.+++++|.+..++.    +.....|...++++            +...++|..+-.+++-+..+++++|+++++|..+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~------------N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~   96 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD------------NGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL   96 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEeccc------------chhhhCCHHHhhccchhhhhhcchhhhhhchHHH
Confidence            4456666666643332    22455666666666            4445555555556667777777777777777667


Q ss_pred             ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHH
Q 047733          117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEE  160 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~  160 (508)
                      ..++.|+.|+++.|++.. |..+..+.+|-+|+..++.+..+|-.
T Consensus        97 Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen   97 AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             hhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            777777777777777655 66666677777777777766655544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=3.5e-05  Score=70.03  Aligned_cols=62  Identities=21%  Similarity=0.232  Sum_probs=32.2

Q ss_pred             CCCCceEeccCCCCCCccCh-hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          164 LTHLRLLDLSNCFNLKVIPP-NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       164 l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      ++++..+.+..|+ +++... .....+|.+..|++..+++.           ..+.++++..++.|+.|.+..+.
T Consensus       198 Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~id-----------swasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  198 FPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNID-----------SWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             cccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccc-----------cHHHHHHHcCCchhheeeccCCc
Confidence            4455555555554 333221 11234555555555555442           22345666777777777776655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.49  E-value=2.1e-05  Score=63.22  Aligned_cols=83  Identities=22%  Similarity=0.248  Sum_probs=49.2

Q ss_pred             hCCCCccEEEecCCcCCCCchhhc-cCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEe
Q 047733           94 TGMRELRVLDFARMHLLPLPSSLR-LFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLD  171 (508)
Q Consensus        94 ~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~  171 (508)
                      .+..+|...++++|.+.++|+.|. ..+-++++++.+|++++ |..+..++.|+.|+++.|.+...|+.+..+.+|..|+
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            445556666666666666665544 23456666666666666 5556666666666666666666665555555666665


Q ss_pred             ccCCC
Q 047733          172 LSNCF  176 (508)
Q Consensus       172 l~~~~  176 (508)
                      ..++.
T Consensus       130 s~~na  134 (177)
T KOG4579|consen  130 SPENA  134 (177)
T ss_pred             CCCCc
Confidence            55544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.45  E-value=0.00025  Score=61.05  Aligned_cols=103  Identities=19%  Similarity=0.230  Sum_probs=80.8

Q ss_pred             cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc--hhhc
Q 047733           40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP--SSLR  117 (508)
Q Consensus        40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~  117 (508)
                      ..-.+++..|.+..++.+-.++.|++|.+..            +.+..+...+-..+++|..|.+.+|++..+-  ..+.
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~n------------NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa  110 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNN------------NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA  110 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecC------------CcceeeccchhhhccccceEEecCcchhhhhhcchhc
Confidence            4667888888887777666899999999988            4555555555566889999999999986543  3467


Q ss_pred             cCccccEEeccCCCCCC-----ccccCCCCCCcEEEccCCCc
Q 047733          118 LFQNLQTLSLDYCELGD-----IAIVGDLKTLVILTLRGSDM  154 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~-----~~~i~~l~~L~~L~l~~~~i  154 (508)
                      .|+.|++|.+-+|+.+.     ...+.++++|++||..+-..
T Consensus       111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            89999999999998664     36788999999999877533

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=1.6e-05  Score=71.52  Aligned_cols=82  Identities=24%  Similarity=0.425  Sum_probs=44.9

Q ss_pred             CccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccCh-hhhhcCCCCcEEEe
Q 047733          119 FQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPP-NVISSLSQLEELYI  197 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l  197 (508)
                      +.+.+.|+..+|.++++....+++.|+.|.|+.|.|..+. .+..|++|++|+|+.|. +.++.. .-+.++|+|+.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence            3345555666666665555556666666666666665553 34556666666666554 333332 22445566666665


Q ss_pred             ecCCC
Q 047733          198 GESPI  202 (508)
Q Consensus       198 ~~~~~  202 (508)
                      ..|..
T Consensus        96 ~ENPC  100 (388)
T KOG2123|consen   96 DENPC  100 (388)
T ss_pred             ccCCc
Confidence            55443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.26  E-value=6.5e-05  Score=67.48  Aligned_cols=191  Identities=14%  Similarity=0.099  Sum_probs=115.1

Q ss_pred             CCCcccEEEeecCCCCC-----CCCC-CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC
Q 047733           37 ALKVCTAISLKNSNISE-----LPQV-FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL  110 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  110 (508)
                      .+..+..+++++|.+.+     +... .+-.+|+..+++..+.++.-..+..+.. -+... .-++++|+..++|+|-|+
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~-~Ll~a-Llkcp~l~~v~LSDNAfg  105 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV-MLLKA-LLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH-HHHHH-HhcCCcceeeeccccccC
Confidence            47789999999999832     2121 2567888888877444433211111100 01112 357899999999999886


Q ss_pred             -CCch----hhccCccccEEeccCCCCCCc--c-------------ccCCCCCCcEEEccCCCchhhHH-----HhccCC
Q 047733          111 -PLPS----SLRLFQNLQTLSLDYCELGDI--A-------------IVGDLKTLVILTLRGSDMEKLVE-----EIGQLT  165 (508)
Q Consensus       111 -~l~~----~~~~l~~L~~L~l~~~~l~~~--~-------------~i~~l~~L~~L~l~~~~i~~lp~-----~~~~l~  165 (508)
                       ..|.    .+++-+.|..|.+.+|.+...  .             -..+-+.|+.....+|.+...+.     .+..-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence             4443    455677899999998864431  1             13356788888888887764332     222335


Q ss_pred             CCceEeccCCCCCCc----cChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          166 HLRLLDLSNCFNLKV----IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       166 ~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      +|+++.+..|..-..    +..--+..+.+|+.|+++.|.++...        .......+...+.|+.|.+..|-
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g--------S~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG--------SRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh--------HHHHHHHhcccchhhhccccchh
Confidence            788888887652211    11111346778888888888776322        12344556666777777776654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.00011  Score=66.37  Aligned_cols=100  Identities=23%  Similarity=0.196  Sum_probs=53.0

Q ss_pred             CCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHH--HhccCCCCceEecc
Q 047733           96 MRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLS  173 (508)
Q Consensus        96 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~  173 (508)
                      +.+.+.|+.-||.+..+.- ..+++.|+.|.|+-|+|+....+..+++|+.|+|..|.|.++.+  -+.++++|+.|-|.
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            3344445555554443321 22455555555555555554445555566666666665554432  24566667777666


Q ss_pred             CCCCCCccCh----hhhhcCCCCcEEE
Q 047733          174 NCFNLKVIPP----NVISSLSQLEELY  196 (508)
Q Consensus       174 ~~~~~~~~~~----~~l~~l~~L~~L~  196 (508)
                      .|+.....+.    .++.-+|+|++|+
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            6654444332    2355677777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.79  E-value=0.003  Score=57.06  Aligned_cols=160  Identities=16%  Similarity=0.246  Sum_probs=108.1

Q ss_pred             CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCC---hhhhhCCCCccEEEecCCcCCCCc-----h---------hhccCc
Q 047733           58 FECPQLKYFHIANDPSRRIPVHIANDPSRRIP---DKFFTGMRELRVLDFARMHLLPLP-----S---------SLRLFQ  120 (508)
Q Consensus        58 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~l~-----~---------~~~~l~  120 (508)
                      ..||+|+..+++.|           ......|   ..+.++-..|.+|.+++|.+..+.     .         -..+-+
T Consensus        89 lkcp~l~~v~LSDN-----------Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp  157 (388)
T COG5238          89 LKCPRLQKVDLSDN-----------AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKP  157 (388)
T ss_pred             hcCCcceeeecccc-----------ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCC
Confidence            38999999999994           3333333   234578899999999999875322     1         122346


Q ss_pred             cccEEeccCCCCCC-c-----cccCCCCCCcEEEccCCCch-----h-hHHHhccCCCCceEeccCCCCCCccCh----h
Q 047733          121 NLQTLSLDYCELGD-I-----AIVGDLKTLVILTLRGSDME-----K-LVEEIGQLTHLRLLDLSNCFNLKVIPP----N  184 (508)
Q Consensus       121 ~L~~L~l~~~~l~~-~-----~~i~~l~~L~~L~l~~~~i~-----~-lp~~~~~l~~L~~L~l~~~~~~~~~~~----~  184 (508)
                      .|++++...|++.. +     ..+....+|+.+.+.+|.|.     . +..++.++.+|+.|+++.|. ++....    .
T Consensus       158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~  236 (388)
T COG5238         158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLAD  236 (388)
T ss_pred             CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHH
Confidence            79999999998554 3     23445578999999999776     2 23457789999999999976 333221    2


Q ss_pred             hhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhcc--CCCCccEEEEeccc
Q 047733          185 VISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELN--NLSKLTSLEILIED  237 (508)
Q Consensus       185 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~  237 (508)
                      .+..++.|+.|++..|-++        ..+..+++..+.  .-++|..|...++.
T Consensus       237 al~~W~~lrEL~lnDClls--------~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         237 ALCEWNLLRELRLNDCLLS--------NEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             Hhcccchhhhccccchhhc--------cccHHHHHHHhhhhcCCCccccccchhh
Confidence            3567888999999998775        233334444443  23566666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.69  E-value=0.00096  Score=60.01  Aligned_cols=81  Identities=22%  Similarity=0.269  Sum_probs=54.9

Q ss_pred             hCCCCccEEEecCC--cCC-CCchhhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhh---HHH-hcc
Q 047733           94 TGMRELRVLDFARM--HLL-PLPSSLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKL---VEE-IGQ  163 (508)
Q Consensus        94 ~~l~~L~~L~l~~~--~~~-~l~~~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~l---p~~-~~~  163 (508)
                      -.+++|+.|.++.|  ++. .++.....+++|+++++++|+++.   ...+.++.+|..|+++.|..+.+   -.. +.-
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            46778888888888  333 455555666888888888888664   45566777788888888755532   222 345


Q ss_pred             CCCCceEeccC
Q 047733          164 LTHLRLLDLSN  174 (508)
Q Consensus       164 l~~L~~L~l~~  174 (508)
                      +++|..|+-..
T Consensus       142 l~~L~~LD~~d  152 (260)
T KOG2739|consen  142 LPSLKYLDGCD  152 (260)
T ss_pred             hhhhccccccc
Confidence            67777776544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=0.0012  Score=56.99  Aligned_cols=70  Identities=16%  Similarity=0.253  Sum_probs=49.9

Q ss_pred             CcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhh
Q 047733          350 TAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDV  421 (508)
Q Consensus       350 ~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~  421 (508)
                      ..+++++.|.+.+|..+.+++-..+.. ..|+|+.|+|++|+.+++-.. ....++++|+.|.+.+.+....
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhhhc
Confidence            356777888888888777776544442 668888888888888887643 4557788888888887665533

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.92  E-value=0.0048  Score=55.62  Aligned_cols=79  Identities=23%  Similarity=0.257  Sum_probs=32.1

Q ss_pred             cccEEeccCCCCCCccccCCCCCCcEEEccCC--Cch-hhHHHhccCCCCceEeccCCCC--CCccChhhhhcCCCCcEE
Q 047733          121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGS--DME-KLVEEIGQLTHLRLLDLSNCFN--LKVIPPNVISSLSQLEEL  195 (508)
Q Consensus       121 ~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~~--~~~~~~~~l~~l~~L~~L  195 (508)
                      .|+.+++.++.++....+..+++|++|.++.|  .+. .++.....+++|+++++++|+.  +.++.+  +..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhh
Confidence            33444444444333334444444455544444  222 2222233334555555544431  112222  3344444444


Q ss_pred             EeecCC
Q 047733          196 YIGESP  201 (508)
Q Consensus       196 ~l~~~~  201 (508)
                      ++++|.
T Consensus       122 dl~n~~  127 (260)
T KOG2739|consen  122 DLFNCS  127 (260)
T ss_pred             hcccCC
Confidence            444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.42  E-value=0.0075  Score=32.27  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=15.3

Q ss_pred             CccEEEecCCcCCCCchhhcc
Q 047733           98 ELRVLDFARMHLLPLPSSLRL  118 (508)
Q Consensus        98 ~L~~L~l~~~~~~~l~~~~~~  118 (508)
                      +|++||+++|.++.+|..|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            477888888877777766654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.14  E-value=0.056  Score=44.25  Aligned_cols=62  Identities=13%  Similarity=0.279  Sum_probs=22.4

Q ss_pred             CChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccC
Q 047733           88 IPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRG  151 (508)
Q Consensus        88 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~  151 (508)
                      +....|..+.+|+.+++..+ +..++ ..|..+..++.+.+.. .+..  ...+..+.+|+.+.+..
T Consensus        26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred             eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence            33333444445555555443 33322 2344444455555533 2221  13333444455554433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.71  E-value=0.0042  Score=53.74  Aligned_cols=43  Identities=12%  Similarity=0.254  Sum_probs=20.4

Q ss_pred             ccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhh
Q 047733          380 CQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVI  422 (508)
Q Consensus       380 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i  422 (508)
                      ++++.|.+.+|..+.+.....+.+-.|+||.|+|++|+.+++-
T Consensus       125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~  167 (221)
T KOG3864|consen  125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG  167 (221)
T ss_pred             chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence            4455555555555544322222233455555555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.44  E-value=0.082  Score=43.24  Aligned_cols=106  Identities=16%  Similarity=0.289  Sum_probs=58.3

Q ss_pred             CChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hcc
Q 047733           88 IPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQ  163 (508)
Q Consensus        88 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~  163 (508)
                      ++...|.++.+|+.+.+.. .+..+. ..|..+.+|+.+.+... +..  -..+..+..|+.+.+.. .+..++.. +..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4455678888899999885 455554 45778888898888774 555  25577777888888865 45545433 455


Q ss_pred             CCCCceEeccCCCCCCccChhhhhcCCCCcEEEeec
Q 047733          164 LTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGE  199 (508)
Q Consensus       164 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  199 (508)
                      +++|+.+.+..+  +..++...+..+ +|+.+.+..
T Consensus        80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            788888887652  455555546666 777776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.87  E-value=0.016  Score=30.98  Aligned_cols=16  Identities=25%  Similarity=0.478  Sum_probs=7.7

Q ss_pred             CcEEEccCCCchhhHH
Q 047733          144 LVILTLRGSDMEKLVE  159 (508)
Q Consensus       144 L~~L~l~~~~i~~lp~  159 (508)
                      |++|++++|.++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4455555554444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.36  E-value=0.096  Score=25.91  Aligned_cols=15  Identities=40%  Similarity=0.605  Sum_probs=6.5

Q ss_pred             CccEEEecCCcCCCC
Q 047733           98 ELRVLDFARMHLLPL  112 (508)
Q Consensus        98 ~L~~L~l~~~~~~~l  112 (508)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555444

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=91.22  E-value=0.12  Score=28.90  Aligned_cols=19  Identities=21%  Similarity=0.114  Sum_probs=12.7

Q ss_pred             ccccCeeEcCCCccccccc
Q 047733          441 LTQLTILELCYLPQLTSFC  459 (508)
Q Consensus       441 ~~~L~~L~l~~c~~L~~~~  459 (508)
                      +|+|++|++++|+++++..
T Consensus         1 c~~L~~L~l~~C~~itD~g   19 (26)
T smart00367        1 CPNLRELDLSGCTNITDEG   19 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHH
Confidence            4667777777777776653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.26  E-value=0.038  Score=49.05  Aligned_cols=84  Identities=7%  Similarity=0.050  Sum_probs=61.2

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccc
Q 047733           59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAI  137 (508)
Q Consensus        59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~  137 (508)
                      .+...+.|+++.|....+            -.. |+.+..+..||++.|.+..+|..++....++.+++..|..+. |..
T Consensus        40 ~~kr~tvld~~s~r~vn~------------~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s  106 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNL------------GKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKS  106 (326)
T ss_pred             ccceeeeehhhhhHHHhh------------ccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcc
Confidence            566666677666332222            112 366777888888888888888888888888888888877666 888


Q ss_pred             cCCCCCCcEEEccCCCch
Q 047733          138 VGDLKTLVILTLRGSDME  155 (508)
Q Consensus       138 i~~l~~L~~L~l~~~~i~  155 (508)
                      .++.+++++++..+|.+.
T Consensus       107 ~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  107 QKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccccCCcchhhhccCcch
Confidence            888888888888888654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.11  E-value=0.45  Score=26.47  Aligned_cols=19  Identities=16%  Similarity=0.280  Sum_probs=14.4

Q ss_pred             cCCCcEEeeccccchhhhh
Q 047733          405 LQQLQFIEVTECQNLDVIF  423 (508)
Q Consensus       405 l~~L~~L~i~~c~~L~~i~  423 (508)
                      +++|++|++++|+.+++..
T Consensus         1 c~~L~~L~l~~C~~itD~g   19 (26)
T smart00367        1 CPNLRELDLSGCTNITDEG   19 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHH
Confidence            4678888888888877654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.84  E-value=1.2  Score=24.69  Aligned_cols=18  Identities=39%  Similarity=0.597  Sum_probs=11.7

Q ss_pred             CCccEEEecCCcCCCCch
Q 047733           97 RELRVLDFARMHLLPLPS  114 (508)
Q Consensus        97 ~~L~~L~l~~~~~~~l~~  114 (508)
                      .+|++|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456667777776666664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.84  E-value=1.2  Score=24.69  Aligned_cols=18  Identities=39%  Similarity=0.597  Sum_probs=11.7

Q ss_pred             CCccEEEecCCcCCCCch
Q 047733           97 RELRVLDFARMHLLPLPS  114 (508)
Q Consensus        97 ~~L~~L~l~~~~~~~l~~  114 (508)
                      .+|++|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456667777776666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	508
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 30/171 (17%)

Query: 96  MRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI-AIVGDLKTLVILTLRGSDM 154
                 L+   + L   P       +LQ +++D   L ++   +     L  LTL  + +
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139

Query: 155 EKLVEEIGQLTHLRLLDLSNCFNLKVIPPNV--------ISSLSQLEELYIGESPIMWGK 206
             L   I  L  LR L +  C  L  +P  +           L  L+ L +  +      
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT------ 193

Query: 207 VGGVDGEGRNASLDEL-NNLSKLTSLEILIEDE---KTLPRDLSFFKMLQR 253
                       +  L  +++ L +L+ L         L   +     L+ 
Sbjct: 194 -----------GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 1e-13
 Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 43/202 (21%)

Query: 46  LKNSNISELP-QVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDF 104
           +  + + ELP  + +   L+   +A +P R +P  IA+             +  LR L  
Sbjct: 111 IDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIAS-------------LNRLRELSI 157

Query: 105 AR----------MHLLPLPSSLRLFQNLQTLSLDYCELGDI-AIVGDLKTLVILTLRGSD 153
                       +         +   NLQ+L L++  +  + A + +L+ L  L +R S 
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217

Query: 154 MEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGE 213
           +  L   I  L  L  LDL  C  L+  PP      + L+ L + +              
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKD-------------- 262

Query: 214 GRNASLDEL-NNLSKLTSLEIL 234
              ++L  L  ++ +LT LE L
Sbjct: 263 --CSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 27/178 (15%)

Query: 45  SLKNSNISELPQVF-ECPQLKYFHIANDPS-RRIPVHIANDPS----------------- 85
           +L  + +  LP       +L+   I   P    +P  +A+  +                 
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 86  ---RRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYC-ELGDI-AIVGD 140
              R +P      ++ L+ L      L  L  ++     L+ L L  C  L +   I G 
Sbjct: 193 TGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251

Query: 141 LKTLVILTLRG-SDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
              L  L L+  S++  L  +I +LT L  LDL  C NL  +P   I+ L     + +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 5e-11
 Identities = 60/337 (17%), Positives = 101/337 (29%), Gaps = 70/337 (20%)

Query: 96  MRELRVLDFAR-MHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDM 154
                 L F     L P    L  +Q       +           +     I T  G  +
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS--AWRQANSNNPQIETRTGRAL 68

Query: 155 EKLVEEIGQLTHLRL--LDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDG 212
           +   + +   T      L+L +   L   P      LS L+ + I  +            
Sbjct: 69  KATADLLEDATQPGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAA------------ 114

Query: 213 EGRNASLDEL-NNLSKLTSLEILIEDE---KTLPRDLSFFKMLQRYSILIGDQWAWDSPS 268
                 L EL + + +   LE L       + LP  ++    L+                
Sbjct: 115 -----GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL-------------- 155

Query: 269 DDISGIFQLT-VASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHL 327
             I    +LT +          G    L  ++ L L  +  ++S+           L++L
Sbjct: 156 -SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSL-----PASIANLQNL 208

Query: 328 EV--VENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDM 385
           +   + NS L  +   +            LE L LR    L      P     F     +
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPK-------LEELDLRGCTALRNY---P---PIFGGRAPL 255

Query: 386 R---VNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNL 419
           +   +  C  L  + PL I R L QL+ +++  C NL
Sbjct: 256 KRLILKDCSNLLTL-PLDIHR-LTQLEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 19/150 (12%)

Query: 45  SLKNSNISELPQ-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLD 103
            L+ + I  LP  +     LK   I N P   +   I +             + +L  LD
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH-------------LPKLEELD 235

Query: 104 FARMHLL-PLPSSLRLFQNLQTLSLDYC-ELGDI-AIVGDLKTLVILTLRG-SDMEKLVE 159
                 L   P        L+ L L  C  L  +   +  L  L  L LRG  ++ +L  
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 160 EIGQLTHLRLLDLSNCFNLKVIPPNVISSL 189
            I QL    ++ +        +  +   + 
Sbjct: 296 LIAQLPANCIILVPPHL-QAQLDQHRPVAR 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.9 bits (183), Expect = 2e-14
 Identities = 73/439 (16%), Positives = 125/439 (28%), Gaps = 142/439 (32%)

Query: 3   DVVRDVAISIASRVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFECPQ 62
           DV     +        +F           W           ++LKN N  E   V E  Q
Sbjct: 169 DVCLSYKV-QCKMDFKIF-----------W-----------LNLKNCNSPET--VLEMLQ 203

Query: 63  LKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMH---LLPL-----PS 114
              + I  + + R      +D S  I  +  +   ELR L  ++ +   LL L       
Sbjct: 204 KLLYQIDPNWTSR------SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 115 SLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDM-----------EKLVEEIGQ 163
           +   F NL       C           K L+  T R   +             L      
Sbjct: 258 AWNAF-NLS------C-----------KILL--TTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 164 LTHLRLLDL-SNCFNLKV--IPPNVISSLSQLEELYIGES----PIMWGKVGGVDGEGRN 216
           LT   +  L     + +   +P  V+++  +   + I ES       W          ++
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNW-------KH 349

Query: 217 ASLDELNNLSKLTSLEILIEDE-KTLPRDLSFFK-----MLQRYSILIGDQWAWDSPSDD 270
            + D+L  + +  SL +L   E + +   LS F           S++    W +D    D
Sbjct: 350 VNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI----W-FDVIKSD 403

Query: 271 ISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYG------SHGEGFPQL 324
           +  +         N                L      +    +           E    L
Sbjct: 404 VMVV--------VNKLHK----------YSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 325 KHLEVVENSNLLCVVDTVD------------------RATAPTTAFPVLESLFLRDLRNL 366
            H  +V++ N+    D+ D                  +         +   +FL D R L
Sbjct: 446 -HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFL 503

Query: 367 E-KICRGPLAAESFCQLRD 384
           E KI     A  +   + +
Sbjct: 504 EQKIRHDSTAWNASGSILN 522

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 2e-11
 Identities = 82/548 (14%), Positives = 164/548 (29%), Gaps = 171/548 (31%)

Query: 3   DVVRDVAIS-IASRVQHVFA---VKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVF 58
             V +     +    + + +   + ++++          L++   +  K   +    Q F
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD--AVSGTLRLFWTLLSKQEEMV---QKF 82

Query: 59  --ECPQLKYFHIA-------NDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHL 109
             E  ++ Y  +          PS    ++I     +R  D+ +   +     + +R+  
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYI----EQR--DRLYNDNQVFAKYNVSRLQP 136

Query: 110 LPLPSSLRLFQNLQTLSLDYCELGDIAIVGDL---KT-LVILTLRGSDMEKLVE-EIGQL 164
                 L+L Q L  L        ++ I G L   KT + +       ++  ++ +I  L
Sbjct: 137 Y-----LKLRQALLELR----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 165 THLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN 224
                  L NC +     P  +  L  L++L                        +  + 
Sbjct: 188 N------LKNCNS-----PETV--LEMLQKLL------------------YQIDPNWTSR 216

Query: 225 LSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILI----GDQWAWDSPSDDISGIFQLTVA 280
               +++++ I   +   R L   K  +   +L+     +  AW++        F L+  
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLLNVQNAKAWNA--------FNLS-- 265

Query: 281 SGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVD 340
                C            K L       +   L  +         H+ +  +S  L    
Sbjct: 266 -----C------------KILLTTRFKQVTDFLSAATT------THISLDHHSMTL---- 298

Query: 341 TVDRATAPTTAFPVLESLFLR-------DLRNLEKICRG-PLA----AESFCQLRDM--- 385
           T D            +SL L+       DL    ++    P      AES   +RD    
Sbjct: 299 TPDEV----------KSLLLKYLDCRPQDLP--REVLTTNPRRLSIIAES---IRDGLAT 343

Query: 386 ----RVNGCDKLKNVFPLVIGRGLQQLQFIEVTEC-QNLDVIFAAERGDESSNSNTQVIE 440
               +   CDKL      +I   L  L+  E  +    L  +F       S++  T ++ 
Sbjct: 344 WDNWKHVNCDKLTT----IIESSLNVLEPAEYRKMFDRL-SVF-----PPSAHIPTILLS 393

Query: 441 LTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHE---STKKVFPN 497
           L             +       +  +   L K  ++E    +   SI       K    N
Sbjct: 394 L---------IWFDVIKSDVMVVVNK---LHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 498 LEYLSQRV 505
              L + +
Sbjct: 442 EYALHRSI 449

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 31/206 (15%), Positives = 72/206 (34%), Gaps = 23/206 (11%)

Query: 48  NSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFAR 106
             N+++LP    + P+L+  +IA +         A+    R+ D       ++++     
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD--WTRLAD-DEDTGPKIQIFYMGY 557

Query: 107 MHLLPLPSSLRLFQ--NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQ- 163
            +L   P+S  L +   L  L   + ++  +   G    L  L L  + +E++ E+    
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAF 617

Query: 164 LTHLRLLDLSNCFNLKVIPPNV-ISSLSQLEELYIGESPI--MWGKVGGVDGEGRNASLD 220
              +  L  S+   LK IP      S+  +  +    + I      +     + +  +  
Sbjct: 618 TDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 221 EL----NNLS--------KLTSLEIL 234
            +    N +           + +  +
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTI 702

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 8/121 (6%)

Query: 112 LPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLD 171
           +  +++    LQ +           I   +      +      E        L  L  ++
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNI--AVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 172 LSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASL-DELNNLSKLTS 230
           L NC N+  +P   +  L +L+ L I  +      +     +     L D+ +   K+  
Sbjct: 498 LYNCPNMTQLPD-FLYDLPELQSLNIACNRG----ISAAQLKADWTRLADDEDTGPKIQI 552

Query: 231 L 231
            
Sbjct: 553 F 553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 20/194 (10%), Positives = 55/194 (28%), Gaps = 36/194 (18%)

Query: 42  TAISLKNSNISELPQVFE---CPQLKYFHIANDPSRRIPVHIANDPS------------- 85
             +   ++ +  +P +F       +     + +       +I+                 
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 86  ----RRIPDKFFTGMRELRVLDFA--------RMHLLPLPSSLRLFQNLQTLSLDYCELG 133
               ++ P + F     +  +  +           L P   + +    L T+ L + +L 
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 134 DI---AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCF-----NLKVIPPNV 185
            +        L  L  + +  +       +    + L+   + +        +    P  
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801

Query: 186 ISSLSQLEELYIGE 199
           I++   L +L IG 
Sbjct: 802 ITTCPSLIQLQIGS 815

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 18/163 (11%), Positives = 52/163 (31%), Gaps = 22/163 (13%)

Query: 45  SLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLD 103
           S+  +++      +     L    +  +    +                 T +  L  +D
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR-----------ATTLPYLSNMD 759

Query: 104 FARMHLLPLPSSLRLFQNLQTLSLDYCE-------LGDI-AIVGDLKTLVILTLRGSDME 155
            +       P+       L+   + +         L      +    +L+ L +  +D+ 
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

Query: 156 KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198
           K+ E++     L +LD+++  N+ +   +V   +     + + 
Sbjct: 820 KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 32/189 (16%), Positives = 69/189 (36%), Gaps = 32/189 (16%)

Query: 45  SLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDF 104
            L+ ++++++    E   +    +A +    I                   +  L  L+ 
Sbjct: 28  VLQKASVTDVVTQEELESITKLVVAGEKVASIQ--------------GIEYLTNLEYLNL 73

Query: 105 ARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQL 164
               +  +   L     L  L +   ++ DI+ + +L  L  L L   ++  +   +  L
Sbjct: 74  NGNQITDIS-PLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SPLANL 131

Query: 165 THLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN 224
           T +  L+L    NL  + P  +S+++ L  L + ES +                +  + N
Sbjct: 132 TKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV--------------KDVTPIAN 175

Query: 225 LSKLTSLEI 233
           L+ L SL +
Sbjct: 176 LTDLYSLSL 184

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 7e-13
 Identities = 30/192 (15%), Positives = 70/192 (36%), Gaps = 32/192 (16%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T + +    ++ +  +     L+Y ++  +    I                 + + +L  
Sbjct: 47  TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS--------------PLSNLVKLTN 92

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L     + +   S+L+   NL+ L L+   + DI+ + +L  +  L L  +     +  +
Sbjct: 93  LYI-GTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPL 151

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
             +T L  L ++    +K + P  I++L+ L  L +  + I                +  
Sbjct: 152 SNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQI--------------EDISP 194

Query: 222 LNNLSKLTSLEI 233
           L +L+ L     
Sbjct: 195 LASLTSLHYFTA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 35/193 (18%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T + +  + I+++  +     L+  ++  D    I                   + ++  
Sbjct: 91  TNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--------------PLANLTKMYS 136

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L+    H L   S L     L  L++   ++ D+  + +L  L  L+L  + +E +   +
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-SPL 195

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
             LT L          +  I P  ++++++L  L IG                 N  + +
Sbjct: 196 ASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIG-----------------NNKITD 235

Query: 222 LNNLSKLTSLEIL 234
           L+ L+ L+ L  L
Sbjct: 236 LSPLANLSQLTWL 248

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 19/139 (13%)

Query: 95  GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDM 154
            + E       +  +  + +     +++  L +   ++  I  +  L  L  L L G+ +
Sbjct: 20  DLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI 78

Query: 155 EKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEG 214
             +   +  L  L  L +     +  I    + +L+ L ELY+ E  I            
Sbjct: 79  TDI-SPLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNEDNI------------ 122

Query: 215 RNASLDELNNLSKLTSLEI 233
             + +  L NL+K+ SL +
Sbjct: 123 --SDISPLANLTKMYSLNL 139

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 4e-11
 Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 33/193 (17%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPD-KFFTGMRELR 100
            ++SL  + I ++  +     L YF               N    +I D      M  L 
Sbjct: 180 YSLSLNYNQIEDISPLASLTSLHYFTAYV-----------N----QITDITPVANMTRLN 224

Query: 101 VLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEE 160
            L      +  L   L     L  L +   ++ DI  V DL  L +L +  + +  +   
Sbjct: 225 SLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-SV 282

Query: 161 IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLD 220
           +  L+ L  L L+N   L      VI  L+ L  L++ ++ I                + 
Sbjct: 283 LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHI--------------TDIR 327

Query: 221 ELNNLSKLTSLEI 233
            L +LSK+ S + 
Sbjct: 328 PLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 33/186 (17%)

Query: 48  NSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARM 107
           N N+S+L  +     L Y  +     + +                   + +L  L     
Sbjct: 142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--------------IANLTDLYSLSLNYN 187

Query: 108 HLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHL 167
            +  + S L    +L   +    ++ DI  V ++  L  L +  + +  L   +  L+ L
Sbjct: 188 QIEDI-SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-SPLANLSQL 245

Query: 168 RLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSK 227
             L++     +  I    +  L++L+ L +G + I              + +  LNNLS+
Sbjct: 246 TWLEIGTN-QISDINA--VKDLTKLKMLNVGSNQI--------------SDISVLNNLSQ 288

Query: 228 LTSLEI 233
           L SL +
Sbjct: 289 LNSLFL 294

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 4e-10
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 18/120 (15%)

Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
                        L    + D+    +L+++  L + G  +  + + I  LT+L  L+L+
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLN 74

Query: 174 NCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEI 233
               +  I P  +S+L +L  LYIG + I                +  L NL+ L  L +
Sbjct: 75  GN-QITDISP--LSNLVKLTNLYIGTNKI--------------TDISALQNLTNLRELYL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 21/163 (12%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPD-KFFTGMRELR 100
              +   + I+++  V    +L    I N           N    +I D      + +L 
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLKIGN-----------N----KITDLSPLANLSQLT 246

Query: 101 VLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKL-VE 159
            L+     +  + + ++    L+ L++   ++ DI+++ +L  L  L L  + +    +E
Sbjct: 247 WLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME 305

Query: 160 EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
            IG LT+L  L LS   ++  I P  ++SLS+++        I
Sbjct: 306 VIGGLTNLTTLFLSQN-HITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 18/112 (16%)

Query: 122 LQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVI 181
             TL+     +  I    DL   +   L+ + +  +     +L  +  L ++    +  I
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDV-VTQEELESITKLVVAGE-KVASI 59

Query: 182 PPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEI 233
               I  L+ LE L +  + I                +  L+NL KLT+L I
Sbjct: 60  QG--IEYLTNLEYLNLNGNQI--------------TDISPLSNLVKLTNLYI 95

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 6e-13
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 33/200 (16%)

Query: 45  SLKNSNISELPQVF--ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVL 102
            L  +    L Q+     P L +  I             N     +       +  LR L
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKG-----------NTKRLELGTGCLENLENLREL 355

Query: 103 DFARMHLLPLPSSLRLFQN---LQTLSLDYCELGDI--AIVGDLKTLVILTLRGSDMEKL 157
           D +   +          +N   LQ+L+L Y E   +      +   L +L L  + ++  
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415

Query: 158 VEE--IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGR 215
             +     L  L++L+LS+   L +    +   L  L+ L +  +    G          
Sbjct: 416 DAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKG---------- 464

Query: 216 NASLDELNNLSKLTSLEILI 235
             ++ + N+L  L  LEIL+
Sbjct: 465 --NIQKTNSLQTLGRLEILV 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 7e-10
 Identities = 32/210 (15%), Positives = 59/210 (28%), Gaps = 32/210 (15%)

Query: 44  ISLKNSNISEL-PQVFEC-PQLKYFHIANDPSRRIPVHIANDPS-----------RRIPD 90
           I+L+      +    F C   L+   +       +P  +    +             +  
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 91  KFFTGMRELRVLDFARMHLL--PLPSSLRLFQNLQTLSLDYCELGDIAIVGD----LKTL 144
              +    L  L               L   +NL+ L L + ++            L  L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 145 VILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIM 203
             L L  ++   L  E   +   L LLDL+          +   +L  L+ L +  S + 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL- 437

Query: 204 WGKVGGVDGEGRNASLDELNNLSKLTSLEI 233
                        +S    + L  L  L +
Sbjct: 438 -----------DISSEQLFDGLPALQHLNL 456

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 15/151 (9%)

Query: 86  RRIPDKFFTGMRE--LRVLDFARMHLLPL-PSSLRLFQNLQTLSLDYCELGDI-AIVGDL 141
             I    F G+ E  +  ++  + +   +  ++   F  LQ L L    L ++ + +  L
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL 300

Query: 142 KTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGES 200
            TL  L L  +  E L          L  L +        +    + +L  L EL +   
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 201 PIMWGKVGGVDGEGRNASLDELNNLSKLTSL 231
            I          E  +    +L NLS L SL
Sbjct: 361 DI----------ETSDCCNLQLRNLSHLQSL 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 7/121 (5%)

Query: 88  IPDKFFTGMRELRVLDFARMHL----LPLPSSLRLFQNLQTLSLDYCELGDIA--IVGDL 141
             ++ F G+  L+ L+    H     +   +SL+    L+ L L +C+L  I       L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 142 KTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
           K +  + L  + +     E         L+L++  ++ +I P+++  LSQ   + + ++P
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN-HISIILPSLLPILSQQRTINLRQNP 558

Query: 202 I 202
           +
Sbjct: 559 L 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 28/151 (18%), Positives = 46/151 (30%), Gaps = 22/151 (14%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHL--LPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDL 141
             IP            L+F+   L  +   ++     NL  L L  C++  I        
Sbjct: 25  NEIPGTLPNS---TECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ 80

Query: 142 KTLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGES 200
             L  L L  + +  + E        L+ L       +  I    + +   LE LY+G +
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSN 139

Query: 201 PIMWGKVGGVDGEGRNASLDELNNLSKLTSL 231
            I             +  L +     KL  L
Sbjct: 140 HIS------------SIKLPKGFPTEKLKVL 158

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 8/124 (6%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHL--LPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDL 141
             I        + L  L     H+  + LP      + L+ L      +  +    +  L
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 142 KTLVILTLRGSD--MEKLVEEIGQLTHLRLLDLSNCFNLKVIPPN-VISSLSQLEELYIG 198
           +    L+L  +   +  +          + L+     NL VI      S++  L      
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 199 ESPI 202
           +   
Sbjct: 237 DMDD 240

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 87/445 (19%), Positives = 137/445 (30%), Gaps = 71/445 (15%)

Query: 88  IPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDLKTLV 145
           IPD      + L  L F  +  L    S   F  LQ L L  CE+  I       L  L 
Sbjct: 22  IPDNLPFSTKNLD-LSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 146 ILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMW 204
            L L G+ ++ L       L+ L+ L      NL  +    I  L  L+EL +  + I  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLI-- 136

Query: 205 GKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSF--FKMLQRYSILIGDQW 262
                        S       S LT+LE L         DLS    + +    + +  Q 
Sbjct: 137 ------------QSFKLPEYFSNLTNLEHL---------DLSSNKIQSIYCTDLRVLHQM 175

Query: 263 AWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFP 322
              + S D+S      +  GA   +          + +L L  + D  +V+         
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIR---------LHKLTLRNNFDSLNVMKTC----IQ 222

Query: 323 QLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQL 382
            L  LEV     L    +  +      +A   L +L + + R            + F  L
Sbjct: 223 GLAGLEVHRLV-LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 383 RDMRVN--GCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERG-DESSNSNTQV- 438
            ++         ++ V       G Q L+ +     Q   +   + +    +SN      
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 341

Query: 439 --IELTQLTILELCY---------------LPQLTS-FCTG----DLHFEFPSLEKLRIL 476
             ++L  L  L+L                    L     +      +   F  LE+L  L
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 477 ECPQVKFKSSIHESTKKVFPNLEYL 501
           +      K     S      NL YL
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYL 426

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 75/431 (17%), Positives = 131/431 (30%), Gaps = 81/431 (18%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHL--LPLPSSLRLFQNLQTLSLDYCEL-----GDIAIV 138
             + +     ++ L+ L+ A   +    LP       NL+ L L   ++      D+ ++
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 139 GDLKTLVI-LTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
             +  L + L L  + M  +     +   L  L L N F+   +    I  L+ LE   +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSIL 257
                                L E  N   L               D S  + L   +I 
Sbjct: 233 --------------------VLGEFRNEGNLEKF------------DKSALEGLCNLTIE 260

Query: 258 IGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSH 317
                  D   DDI  +F   + + ++  L    I ++K          L++ +  +G  
Sbjct: 261 EFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 318 GE-GFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAA 376
                  LK L     SN                  P LE L L    N   +      +
Sbjct: 320 PTLKLKSLKRLTF--TSNKG-------GNAFSEVDLPSLEFLDLSR--N--GLSFKGCCS 366

Query: 377 ESFCQLR-----DMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDES 431
           +S          D+  NG   + + F      GL+QL+ ++      L  +      + S
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFL-----GLEQLEHLDFQHSN-LKQMS-----EFS 415

Query: 432 SNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHEST 491
              +     L  L  L++ +         G     F  L  L +L+     F+ +     
Sbjct: 416 VFLS-----LRNLIYLDISHT-HTRVAFNGI----FNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 492 KKVFPNLEYLS 502
                NL +L 
Sbjct: 466 FTELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 6e-10
 Identities = 28/167 (16%), Positives = 65/167 (38%), Gaps = 18/167 (10%)

Query: 42  TAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELR 100
             + L  + +  +   F    QL++    +   +++                F  +R L 
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-----------EFSVFLSLRNLI 424

Query: 101 VLDFARMHLLPLPSS-LRLFQNLQTLSLDYCELGDI---AIVGDLKTLVILTLRGSDMEK 156
            LD +  H     +       +L+ L +      +     I  +L+ L  L L    +E+
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 157 LVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
           L       L+ L++L++++   LK +P  +   L+ L+++++  +P 
Sbjct: 485 LSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 23/164 (14%), Positives = 58/164 (35%), Gaps = 14/164 (8%)

Query: 38  LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMR 97
           LK    ++  ++         + P L++  ++ +                   +   G  
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG----------CCSQSDFGTT 373

Query: 98  ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVG---DLKTLVILTLRGSDM 154
            L+ LD +   ++ + S+    + L+ L   +  L  ++       L+ L+ L +  +  
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 155 EKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
                 I   L+ L +L ++     +   P++ + L  L  L +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 26/164 (15%)

Query: 48  NSNISELPQVFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFAR 106
                     ++    L    + N                ++P      + E+++++ A 
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYN-----------CPNLTKLPTFLK-ALPEMQLINVAC 282

Query: 107 MHLLPLP---------SSLRLFQNLQTLSLDYCELGDIAI---VGDLKTLVILTLRGSDM 154
              +            +   + + +Q + + Y  L    +   +  +K L +L    + +
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 155 EKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198
           E  +   G    L  L+L+    +  IP N      Q+E L   
Sbjct: 343 EGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFA 385

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 23/195 (11%), Positives = 57/195 (29%), Gaps = 38/195 (19%)

Query: 42  TAISLKNSNISELPQVFE---CPQLKYF--------HIANDPSRRIPVHIANDPS----- 85
             +S  ++ +  +P +F+      +            +       +        +     
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 86  ------RRIPDKFFTGMRELRVLDFA--------RMHLLPLPSSLRLFQNLQTLSLDYCE 131
                  + P + F+    L  ++          +  L     + +    L ++ L + +
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 132 LGDI---AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKV-----IPP 183
           L  +        L  LV + L  +   K   +    + L+   + N  + +        P
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 184 NVISSLSQLEELYIG 198
             I+    L +L IG
Sbjct: 560 EGITLCPSLTQLQIG 574

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 24/222 (10%), Positives = 59/222 (26%), Gaps = 40/222 (18%)

Query: 42  TAISLKNSNIS-ELP-QVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
           T +SL+    S  +P  + +  +L+   + +           +            G+   
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGS-----------HGEKVNERLFGPKGISAN 132

Query: 100 RVLDFARMHLLPL-PSSLRLFQNLQTLSLDYCELGDIAIVGDLKT-------LVILTLRG 151
              +  +   +    + +          L    +        +K           +    
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 152 SDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVD 211
           +++  + + + +LT LR   + N                  E     ++           
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED--------- 242

Query: 212 GEGRNASLDELNNLSKLTSLEIL-IEDEKTLPRDLSFFKMLQ 252
                    + +NL  LT +E+    +   LP  L     +Q
Sbjct: 243 --------LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 12/118 (10%)

Query: 88  IPDKF-FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCE-------LGDI-AIV 138
           + D F  T +  L  +D +       P+       L+   +           L +    +
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562

Query: 139 GDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196
               +L  L +  +D+ K+ E+I    ++ +LD+ +      I  + +    +     
Sbjct: 563 TLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDN-PNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 40/322 (12%), Positives = 88/322 (27%), Gaps = 67/322 (20%)

Query: 160 EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASL 219
            +     +  L L          P+ I  L++LE L +G                     
Sbjct: 76  SLNSNGRVTGLSLEGF-GASGRVPDAIGQLTELEVLALGS-------------------- 114

Query: 220 DELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTV 279
              +       L          P+ +S     ++   +             +    +   
Sbjct: 115 ---HGEKVNERLFG--------PKGISANMSDEQKQKMRM-----HYQKTFVDYDPREDF 158

Query: 280 ASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFP----QLKHLEVVE-NSN 334
           +     C+N     Q K IK+       D +     ++         +L  L      ++
Sbjct: 159 SDLIKDCINS--DPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS 216

Query: 335 LLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLK 394
                           A  + E+    +    ++     L  ++   L D+ V  C  L 
Sbjct: 217 PF-------------VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263

Query: 395 NVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQ 454
              P  +   L ++Q I V   + +      E+  +   +        ++ I+ +     
Sbjct: 264 -KLPTFLKA-LPEMQLINVACNRGISG----EQLKDDWQALADAPVGEKIQIIYI----G 313

Query: 455 LTSFCTGDLHFEFPSLEKLRIL 476
             +  T  +      ++KL +L
Sbjct: 314 YNNLKTFPVETSLQKMKKLGML 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 24/163 (14%)

Query: 44  ISLKNSNIS-ELPQVFECPQLKYFHIA-NDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           + + ++N S  +P + +C  L++  I+ N  S      I+                EL++
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST-------------CTELKL 251

Query: 102 LDFARMHLL-PLPSSLRLFQNLQTLSLDYCEL-GDI--AIVGDLKTLVILTLRGSDME-K 156
           L+ +    + P+P      ++LQ LSL   +  G+I   + G   TL  L L G+     
Sbjct: 252 LNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 157 LVEEIGQLTHLRLLDLSNCFNLK-VIPPNVISSLSQLEELYIG 198
           +    G  + L  L LS+  N    +P + +  +  L+ L + 
Sbjct: 310 VPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLS 351

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 26/144 (18%)

Query: 111 PLPSSLRLFQNLQTLSLDYCEL-GDIAIVGDLKTLVILTLRGSDMEKLV---EEIGQLTH 166
            + SSL     L++L L    + G ++      +L  L L  + +   V     +G  + 
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 167 LRLLDLSNCFNLKVIPPNVISSLSQLEELYI------GESPIMWGKVGGVDGEGRNASLD 220
           L+ L++S+         +    L+ LE L +      G + + W    G         L 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC------GELK 181

Query: 221 EL----NNLS------KLTSLEIL 234
            L    N +S      +  +LE L
Sbjct: 182 HLAISGNKISGDVDVSRCVNLEFL 205

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 39/229 (17%), Positives = 69/229 (30%), Gaps = 64/229 (27%)

Query: 50  NISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHL 109
            ++ L  +  C  LK+ ++++           N             +  L VLD +   +
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSS-----------NTLDFPGKVSGGLKLNSLEVLDLSANSI 163

Query: 110 -LPLPSSLRLFQN---LQTLSLDYCEL-GDIAIVGDLKTLVILTLRG----------SDM 154
                    L      L+ L++   ++ GD+ +      L  L +             D 
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDC 222

Query: 155 EKLV--------------EEIGQLTHLRLLDLSNCFNLK-VIPPNVISSLSQLEELYIGE 199
             L                 I   T L+LL++S+       IPP     L  L+ L + E
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPP---LPLKSLQYLSLAE 278

Query: 200 SPIMWGKVGGVDGE--GRNASLDEL----NNLS--------KLTSLEIL 234
           +       G +     G   +L  L    N+            + LE L
Sbjct: 279 NKF----TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 21/152 (13%)

Query: 55  PQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL-PLP 113
           P    C  L+   +++           N+ S  +P      MR L+VLD +       LP
Sbjct: 312 PFFGSCSLLESLALSS-----------NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360

Query: 114 SSL-RLFQNLQTLSLDYCEL-GDI---AIVGDLKTLVILTLRGSDME-KLVEEIGQLTHL 167
            SL  L  +L TL L      G I          TL  L L+ +    K+   +   + L
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420

Query: 168 RLLDLSNCFNLK-VIPPNVISSLSQLEELYIG 198
             L LS    L   IP + + SLS+L +L + 
Sbjct: 421 VSLHLSFN-YLSGTIPSS-LGSLSKLRDLKLW 450

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 88  IPDKFFTGMRELRVLDFARMHLL-PLPSSLRLFQNLQTLSLDYCEL-GDI-AIVGDLKTL 144
           IP      + +LR L      L   +P  L   + L+TL LD+ +L G+I + + +   L
Sbjct: 434 IPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 145 VILTLRGSDME-KLVEEIGQLTHLRLLDLSNCFNLK-VIPPNVISSLSQLEELYIGE 199
             ++L  + +  ++ + IG+L +L +L LSN  +    IP   +     L  L +  
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNN-SFSGNIPAE-LGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 24/160 (15%), Positives = 50/160 (31%), Gaps = 25/160 (15%)

Query: 55  PQVFECPQLKYFHIA-NDPSRRIPVHIA--------NDPSRRIPDKFFTGMRELRVLDFA 105
            ++ +C  L +  +  N  +  IP  +         N  + +    +       +    A
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY-VYIKNDGMKKECHGA 590

Query: 106 RMHLL---PLPSSLRLFQNLQTLSLDYCEL-GDI-AIVGDLKTLVILTLRGSDMEKLV-- 158
              L         L         ++      G       +  +++ L +  +    L   
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN---MLSGY 647

Query: 159 --EEIGQLTHLRLLDLS-NCFNLKVIPPNVISSLSQLEEL 195
             +EIG + +L +L+L  N  +   IP   +  L  L  L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDIS-GSIPDE-VGDLRGLNIL 685

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDM-EKLVEEIGQLTHLRLLDL 172
           + +    N++ L+++     +   +  L  L  L + G D+    +  +  LT L LLD+
Sbjct: 60  TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 173 SNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLE 232
           S+           I++L ++  + +                  N ++ ++  L  L  L+
Sbjct: 120 SHS-AHDDSILTKINTLPKVNSIDL----------------SYNGAITDIMPLKTLPELK 162

Query: 233 IL 234
            L
Sbjct: 163 SL 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 22/165 (13%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPD-KFFTGMRELR 100
           T I+L N N+++L  +     +K   I N                   +    +G+  L 
Sbjct: 47  TYITLANINVTDLTGIEYAHNIKDLTINNI---------------HATNYNPISGLSNLE 91

Query: 101 VLDFARMHL-LPLPSSLRLFQNLQTLSLDYCELGDIAI--VGDLKTLVILTLRGSDMEKL 157
            L      +      +L    +L  L + +    D  +  +  L  +  + L  +     
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 158 VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
           +  +  L  L+ L++     +       I    +L +LY     I
Sbjct: 152 IMPLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTI 193

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 30/201 (14%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPV---------HIANDPSRRIPDKF 92
             + L ++ IS++  +     L+     N  +   P+          I+++    I    
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--V 194

Query: 93  FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGS 152
              +  L  L      +  +   L +  NL  LSL+  +L DI  +  L  L  L L  +
Sbjct: 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253

Query: 153 DMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDG 212
            +  L   +  LT L  L L     +  I P  ++ L+ L  L + E+ +          
Sbjct: 254 QISNL-APLSGLTKLTELKLGAN-QISNISP--LAGLTALTNLELNENQL---------- 299

Query: 213 EGRNASLDELNNLSKLTSLEI 233
                 +  ++NL  LT L +
Sbjct: 300 ----EDISPISNLKNLTYLTL 316

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 36/192 (18%), Positives = 74/192 (38%), Gaps = 33/192 (17%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
             +SL  + + ++  +     L    +AN+    +                 +G+ +L  
Sbjct: 224 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--------------PLSGLTKLTE 269

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L      +  +   L     L  L L+  +L DI+ + +LK L  LTL  +++  +   +
Sbjct: 270 LKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-SPV 327

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
             LT L+ L   N   +  +    +++L+ +  L  G + I              + L  
Sbjct: 328 SSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLSAGHNQI--------------SDLTP 370

Query: 222 LNNLSKLTSLEI 233
           L NL+++T L +
Sbjct: 371 LANLTRITQLGL 382

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 6e-11
 Identities = 29/194 (14%), Positives = 71/194 (36%), Gaps = 33/194 (17%)

Query: 40  VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
           + +A   +++ I+++       +     +              + +  +     T + ++
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVLGK-----------TNVTDTVS---QTDLDQV 48

Query: 100 RVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVE 159
             L   R+ +  +   +    NL  ++    +L DI  + +L  LV + +  + +  +  
Sbjct: 49  TTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-T 106

Query: 160 EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASL 219
            +  LT+L  L L N   +  I P  + +L+ L  L +  + I              + +
Sbjct: 107 PLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTI--------------SDI 149

Query: 220 DELNNLSKLTSLEI 233
             L+ L+ L  L  
Sbjct: 150 SALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 7e-11
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 37/193 (19%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T ++L N+ I+++  +     L    ++++    I                 +G+  L+ 
Sbjct: 115 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--------------ALSGLTSLQQ 160

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L F        P  L     L+ L +   ++ DI+++  L  L  L    + +  +   +
Sbjct: 161 LSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI-TPL 217

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
           G LT+L  L L+    LK I    ++SL+ L +L +  + I                   
Sbjct: 218 GILTNLDELSLNGN-QLKDIGT--LASLTNLTDLDLANNQI-----------------SN 257

Query: 222 LNNLSKLTSLEIL 234
           L  LS LT L  L
Sbjct: 258 LAPLSGLTKLTEL 270

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 36/193 (18%), Positives = 69/193 (35%), Gaps = 37/193 (19%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T +      I  +  V     L   + +N+    I                   + +L  
Sbjct: 49  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--------------PLKNLTKLVD 94

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           +      +  +   L    NL  L+L   ++ DI  + +L  L  L L  + +  +   +
Sbjct: 95  ILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SAL 152

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
             LT L+ L   N   +  + P  +++L+ LE L I                  +  + +
Sbjct: 153 SGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDIS-----------------SNKVSD 191

Query: 222 LNNLSKLTSLEIL 234
           ++ L+KLT+LE L
Sbjct: 192 ISVLAKLTNLESL 204

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 35/203 (17%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T I+  N+ ++++  +    +L    + N           N  +   P      +  L  
Sbjct: 71  TQINFSNNQLTDITPLKNLTKLVDILMNN-----------NQIADITP---LANLTNLTG 116

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L      +  +   L+   NL  L L    + DI+ +  L +L  L+    +    ++ +
Sbjct: 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF--GNQVTDLKPL 173

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
             LT L  LD+S+   +  I    ++ L+ LE L    + I       +   G   +LDE
Sbjct: 174 ANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQI-----SDITPLGILTNLDE 225

Query: 222 LN----------NLSKLTSLEIL 234
           L+           L+ LT+L  L
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDL 248

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 27/204 (13%), Positives = 66/204 (32%), Gaps = 31/204 (15%)

Query: 30  TSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIP 89
           ++      L   T + L  + IS +  +     L    +  +    I             
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS------------ 303

Query: 90  DKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTL 149
               + ++ L  L     ++  + S +     LQ L     ++ D++ + +L  +  L+ 
Sbjct: 304 --PISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSA 360

Query: 150 RGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGG 209
             + +  L   +  LT +  L L++       P N  +++S    +              
Sbjct: 361 GHNQISDL-TPLANLTRITQLGLNDQ-AWTNAPVNYKANVSIPNTVK------------- 405

Query: 210 VDGEGRNASLDELNNLSKLTSLEI 233
            +  G   +   +++    T  +I
Sbjct: 406 -NVTGALIAPATISDGGSYTEPDI 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 44/208 (21%)

Query: 46  LKNSNISELPQ-VFECPQLKYFHIA-NDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLD 103
             +SN++E+P           ++ A ++  R  P          +        R+   L+
Sbjct: 18  RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77

Query: 104 FARMHLLPLPSSLRLFQNLQTLSLDYCELGDI-AIVGDLKTLVILTLRGSDMEKL----- 157
              + L  LP       +L++L      L ++  +   LK+L++       +  L     
Sbjct: 78  LNNLGLSSLPELP---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLE 134

Query: 158 -----------VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGK 206
                      + E+   + L+++D+ N  +LK +P         LE +           
Sbjct: 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLP----DLPPSLEFIAA--------- 180

Query: 207 VGGVDGEGRNASLDELNNLSKLTSLEIL 234
                    N  L+EL  L  L  L  +
Sbjct: 181 --------GNNQLEELPELQNLPFLTAI 200

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 18/169 (10%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIAN----DPSR----RIPDKFF 93
             + + N+ + +LP++     LK   + N+  +++P    +             +P+   
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE--L 191

Query: 94  TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSD 153
             +  L  +      L  LP       +L+++      L ++  + +L  L  +    + 
Sbjct: 192 QNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNL 248

Query: 154 MEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
           ++ L +    L  L + D      L  + P +  SL+ L+      S +
Sbjct: 249 LKTLPDLPPSLEALNVRDNY----LTDL-PELPQSLTFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 59/207 (28%)

Query: 46  LKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFA 105
           L N  +S LP+    P L+    + +    +P    +             ++ L V +  
Sbjct: 78  LNNLGLSSLPE--LPPHLESLVASCNSLTELPELPQS-------------LKSLLVDNNN 122

Query: 106 RMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLT 165
              L  LP        L+ L +   +L  +  + +   L I+ +  + ++KL +    L 
Sbjct: 123 LKALSDLPP------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 176

Query: 166 HLRL-------------------LDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGK 206
            +                     +   N  +LK +P         LE +  G + +    
Sbjct: 177 FIAAGNNQLEELPELQNLPFLTAIYADNN-SLKKLPD----LPLSLESIVAGNNIL---- 227

Query: 207 VGGVDGEGRNASLDELNNLSKLTSLEI 233
                       L EL NL  LT++  
Sbjct: 228 ----------EELPELQNLPFLTTIYA 244

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 29/157 (18%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
            +I   N+ + ELP++   P L   +  N+  + +P    +                L  
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPS----------------LEA 261

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L+    +L  LP   +    L      +  L ++        L  L    +++  L +  
Sbjct: 262 LNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL-----PPNLYYLNASSNEIRSLCDLP 316

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198
             L     L++SN   L  +P    +   +LE L   
Sbjct: 317 PSLEE---LNVSNN-KLIELP----ALPPRLERLIAS 345

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 4/149 (2%)

Query: 86  RRIPDKFFTGMRELRVLDFA--RMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKT 143
             + D        ++ LD     +  +           L+ L+L Y  + D+        
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK 192

Query: 144 LVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIM 203
           L  L L  + +  +  E      +  + L N   L +I    +     LE   +  +   
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNGFH 250

Query: 204 WGKVGGVDGEGRNASLDELNNLSKLTSLE 232
            G +     + +         + KLT   
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 39/170 (22%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGDIAIVGDLKTL 144
           ++           ++ LD +   L  +  + L  F  L+ L+L    L +   +  L TL
Sbjct: 23  KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTL 82

Query: 145 VILTLRGSDMEKLVEEIGQLTHLRLLDLS-NCF-------------------NLKVIPPN 184
             L L  + +    +E+     +  L  + N                      + ++   
Sbjct: 83  RTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL 138

Query: 185 VISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
                S+++ L +  + I               +++     +   +LE L
Sbjct: 139 DEGCRSRVQYLDLKLNEI--------------DTVNFAELAASSDTLEHL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 137 IVGDLKTLVILTLRGSDMEKLVEEIGQ-LTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195
           I  +     I  +  S +++ +  + Q   +++ LDLS    L  I    ++  ++LE L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELL 63

Query: 196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSL 231
            +  + +                  +L +LS L +L
Sbjct: 64  NLSSNVL--------------YETLDLESLSTLRTL 85

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 23/125 (18%)

Query: 112 LPSSLRLFQNLQTLSLDYCELGDI--AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLR 168
           +    +     +   +    L     ++      +  L L G+ + ++   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 169 LLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKL 228
           LL+LS+   L       + SLS L  L +                  N  + EL     +
Sbjct: 62  LLNLSSN-VLYETLD--LESLSTLRTLDL----------------NNN-YVQELLVGPSI 101

Query: 229 TSLEI 233
            +L  
Sbjct: 102 ETLHA 106

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 15/124 (12%)

Query: 88  IPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQN---LQTLSLDYCELGDI--AIVGDLK 142
           +    F  +  L+ L   R+ L  + SS   FQ    L  L L    + +I   ++  L+
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

Query: 143 TLVILTLRG---------SDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLE 193
            L IL L+          ++    +  +  L+HL +L+L +      IP  V   L +L+
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELK 563

Query: 194 ELYI 197
            + +
Sbjct: 564 IIDL 567

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 8e-11
 Identities = 40/213 (18%), Positives = 74/213 (34%), Gaps = 25/213 (11%)

Query: 42  TAISLKNSNISEL-PQVFE-CPQLKYFHIA-NDPSRRIPVHIANDPS-----------RR 87
           T ++L ++ +  L    F    QL    +  N  S+  P      P             +
Sbjct: 28  TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87

Query: 88  IPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQNLQTLSLDYCELGDI--AIVGDLKTL 144
           + DK F     L  L      +  +  +     +NL TL L +  L          L+ L
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

Query: 145 VILTLRG---SDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
             L L       ++    +I   + L+ L+LS+   +K   P    ++ +L  L++    
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 202 IMWGKVGGVDGEGRNASLDEL----NNLSKLTS 230
           +       +  E  N S+  L    + LS  ++
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 21/140 (15%)

Query: 98  ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDLKTLVILTLRGSDME 155
              V D + + L  +P  L    N+  L+L + +L  +  A       L  L +  + + 
Sbjct: 5   SHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 156 KLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEG 214
           KL  E   +L  L++L+L +   L  +     +  + L EL++  + I            
Sbjct: 63  KLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSI------------ 109

Query: 215 RNASLDELNNLSKLTSLEIL 234
               +   N   K  +L  L
Sbjct: 110 --QKIKN-NPFVKQKNLITL 126

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 28/201 (13%)

Query: 44  ISLKNSNISEL-PQVFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
             L+ +NI  L          ++Y ++           I+     +I D  F  ++ L  
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---FTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 102 LDFARMHLLPL-PSSLRLFQNLQTLSLDYCELGDIAIVGD------LKTLVILTLRGSDM 154
           L+     +  +  +      NL+ LSL         +  +         L IL L  + +
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 155 EKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGE 213
            K+  +    L HL +LDL      + +       L  + E+Y+  +             
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY----------- 442

Query: 214 GRNASLDELNNLSKLTSLEIL 234
                    N+ + + SL+ L
Sbjct: 443 ----LQLTRNSFALVPSLQRL 459

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 25/168 (14%)

Query: 44  ISLKNSNISEL-PQVFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           I L  +   +L    F   P L+   +         V + N  S       F  +R L +
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRR-------VALKNVDSS---PSPFQPLRNLTI 484

Query: 102 LDFARMHLLPLPSS-LRLFQNLQTLSLDYCELGDI----------AIVGDLKTLVILTLR 150
           LD +  ++  +    L   + L+ L L +  L  +            +  L  L IL L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 151 GSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
            +  +++ VE    L  L+++DL    NL  +P +V ++   L+ L +
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 26/156 (16%)

Query: 88  IPDKFFT--GMRELRVLDFA--RMHLLPLPSSLRLFQNLQTLSLDYCELG-----DIAIV 138
           +  +         L+ L+ +  ++     P        L  L L+  +LG      + + 
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 139 GDLKTLVILTLRGSDMEKLVEEIG---QLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195
               ++  L+L  S +           + T+L +LDLS   NL V+  +  + L QLE  
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYF 277

Query: 196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSL 231
           ++  + I            ++     L+ L  +  L
Sbjct: 278 FLEYNNI------------QHLFSHSLHGLFNVRYL 301

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 46  LKNSNISELP-QVFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLD 103
           L+N+ I  +P   F   P L+   +      R+           I +  F G+  LR L+
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELK--RL---------SYISEGAFEGLSNLRYLN 191

Query: 104 FARMHLLPLPSSLRLFQNLQTLSLDYCELGDIA--IVGDLKTLVILTLRGSDMEKLVEE- 160
            A  +L  +P+   L   L  L L    L  I       L  L  L +  S ++ +    
Sbjct: 192 LAMCNLREIPNLTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 161 IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
              L  L  ++L++  NL ++P ++ + L  LE +++  +P 
Sbjct: 251 FDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 36/152 (23%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDIA--IVGDLK 142
           + I    F  +R L +L  +R H+  +   +     NL TL L    L  I       L 
Sbjct: 77  QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136

Query: 143 TLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
            L  L LR + +E +      ++  LR LDL     L  I       LS L  L +    
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 202 IMWGKVGGVDGEGRNASLDELNNLSKLTSLEI 233
           +                +  L  L KL  L++
Sbjct: 197 L--------------REIPNLTPLIKLDELDL 214

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 9e-11
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 21/158 (13%)

Query: 47  KNSNISELPQVFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFA 105
             S      Q       LKY  ++            N       +  F G+ +L  LDF 
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSF-----------NGVITMSSN--FLGLEQLEHLDFQ 404

Query: 106 RMHL--LPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDLKTLVILTLRGSDMEKLV--E 159
             +L  +   S     +NL  L + +         I   L +L +L + G+  ++    +
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 160 EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
              +L +L  LDLS C  L+ + P   +SLS L+ L +
Sbjct: 465 IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNM 501

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQNLQTLSLDYCELGDIA--IVGDLK 142
           R +    F    EL+VLD +R  +  +   + +   +L TL L    +  +A      L 
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 143 TLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198
           +L  L    +++  L    IG L  L+ L++++        P   S+L+ LE L + 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 25/164 (15%), Positives = 45/164 (27%), Gaps = 20/164 (12%)

Query: 38  LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMR 97
           L   ++ SL +  I  +         ++  + N               +  P      ++
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN-----------CKFGQ-FPTLKLKSLK 328

Query: 98  ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIV----GDLKTLVILTLRGSD 153
            L               S     +L+ L L    L              +L  L L  + 
Sbjct: 329 RLTFTSN----KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 154 MEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
           +  +      L  L  LD  +    ++   +V  SL  L  L I
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 33/194 (17%), Positives = 60/194 (30%), Gaps = 41/194 (21%)

Query: 44  ISLKNSNISELPQVF--ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           +    +N++ L          LK  ++A+           N        ++F+ +  L  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAH-----------NLIQSFKLPEYFSNLTNLEH 153

Query: 102 LDFARMHL-LPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEE 160
           LD +   +     + LR+   +  L+L                   L L  + M  +   
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLS------------------LDLSLNPMNFIQPG 195

Query: 161 IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLD 220
             +   L  L L N F+   +    I  L+ LE   +         V G      N    
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL---------VLGEFRNEGNLEKF 246

Query: 221 ELNNLSKLTSLEIL 234
           + + L  L +L I 
Sbjct: 247 DKSALEGLCNLTIE 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 86  RRIPDKFFTGMRELRVLDFARM-HLLPLPS-SLRLFQNLQTLSLDYCELGDIAIVGDLKT 143
             IP   F  +  L  LD   +  L  +   +     NL+ L+L  C + D+  +  L  
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG 219

Query: 144 LVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196
           L  L + G+   ++       L+ L+ L + N   + +I  N    L+ L EL 
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELN 272

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 20/163 (12%)

Query: 46  LKNSNISELP-QVFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLD 103
           L+N+ I  +P   F   P L    +      ++           I +  F G+  L+ L+
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELK--KL---------EYISEGAFEGLFNLKYLN 202

Query: 104 FARMHLLPLPSSLRLFQNLQTLSLDYCELGDI---AIVGDLKTLVILTLRGSDMEKLVEE 160
               ++  +P+   L   L+ L +      +I   +  G L +L  L +  S +  +   
Sbjct: 203 LGMCNIKDMPNLTPL-VGLEELEMSGNHFPEIRPGSFHG-LSSLKKLWVMNSQVSLIERN 260

Query: 161 -IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
               L  L  L+L++  NL  +P ++ + L  L EL++  +P 
Sbjct: 261 AFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 34/152 (22%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDIA--IVGDLK 142
           + I    F  +  L VL   R  +  +   +     +L TL L    L  I       L 
Sbjct: 88  QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147

Query: 143 TLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
            L  L LR + +E +      ++  L  LDL     L+ I       L  L+ L +G   
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 202 IMWGKVGGVDGEGRNASLDELNNLSKLTSLEI 233
           I                +  L  L  L  LE+
Sbjct: 208 I--------------KDMPNLTPLVGLEELEM 225

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 18/120 (15%), Positives = 47/120 (39%), Gaps = 18/120 (15%)

Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
                  N   ++     + D     DL  +  L+  G+ +  + E +  L +L  L+L 
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELK 71

Query: 174 NCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEI 233
           +   +  + P  + +L+++ EL +  +P+               ++  +  L  + +L++
Sbjct: 72  DN-QITDLAP--LKNLTKITELELSGNPLK--------------NVSAIAGLQSIKTLDL 114

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 34/192 (17%), Positives = 77/192 (40%), Gaps = 33/192 (17%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
             + LK++ I++L  +    ++    ++ +P + +                  G++ ++ 
Sbjct: 66  IGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--------------SAIAGLQSIKT 111

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           LD     +  + + L    NLQ L LD  ++ +I+ +  L  L  L++  + +  L   +
Sbjct: 112 LDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TPL 169

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
             L+ L  L   +   +  I P  ++SL  L E+++  + I              + +  
Sbjct: 170 ANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQI--------------SDVSP 212

Query: 222 LNNLSKLTSLEI 233
           L N S L  + +
Sbjct: 213 LANTSNLFIVTL 224

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 30/192 (15%), Positives = 75/192 (39%), Gaps = 33/192 (17%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T +S   + ++ +  V     L    + ++    +                   + ++  
Sbjct: 44  TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--------------PLKNLTKITE 89

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L+ +   L  + S++   Q+++TL L   ++ D+  +  L  L +L L  + +  +   +
Sbjct: 90  LELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SPL 147

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
             LT+L+ L + N   +  + P  +++LS+L  L   ++ I              + +  
Sbjct: 148 AGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKI--------------SDISP 190

Query: 222 LNNLSKLTSLEI 233
           L +L  L  + +
Sbjct: 191 LASLPNLIEVHL 202

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 27/217 (12%)

Query: 95  GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDM 154
            +     +   + ++     +      + TLS     +  I  V  L  L+ L L+ + +
Sbjct: 17  ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75

Query: 155 EKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEG 214
             L   +  LT +  L+LS    LK +    I+ L  ++ L +  + I       V    
Sbjct: 76  TDL-APLKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQI-----TDVTPLA 126

Query: 215 RNASLDELN----------NLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAW 264
             ++L  L            L+ LT+L+ L      +  DL+    L + + L     A 
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTL----KAD 181

Query: 265 DSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKEL 301
           D+   DIS +  L   +   + L    I  +  +   
Sbjct: 182 DNKISDISPLASLP--NLIEVHLKNNQISDVSPLANT 216

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 19/161 (11%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T + L  + +  +  +     +K   + +     +                  G+  L+V
Sbjct: 88  TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT--------------PLAGLSNLQV 133

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L      +  + S L    NLQ LS+   ++ D+  + +L  L  L    + +  +   +
Sbjct: 134 LYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI-SPL 191

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
             L +L  + L N   +  + P  +++ S L  + +    I
Sbjct: 192 ASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 17/159 (10%)

Query: 38  LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMR 97
           L+    + L ++ I+++  +     L+  ++  +    I                  G+ 
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--------------LAGLT 151

Query: 98  ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKL 157
            L+ L      +  L + L     L TL  D  ++ DI+ +  L  L+ + L+ + +  +
Sbjct: 152 NLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210

Query: 158 VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196
              +   ++L ++ L+N   +   P    ++L     + 
Sbjct: 211 -SPLANTSNLFIVTLTNQ-TITNQPVFYNNNLVVPNVVK 247

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 17/156 (10%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
             + L  + I+ +  +     L+Y  I N     +                   + +L  
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--------------PLANLSKLTT 177

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L      +  + S L    NL  + L   ++ D++ + +   L I+TL    +      +
Sbjct: 178 LKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQ--PV 234

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
               +L + ++    +   I P  IS         +
Sbjct: 235 FYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLL--PLPSSLRLFQNLQTLSLDYCELGDI--AIVGDL 141
           +   D  F G+  L  L  A        L +      NL  L L  C+L  I   +   L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 142 KTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGES 200
             L +L +  +++  L      QL  L  LD S    ++     +      L    +  +
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN 555

Query: 201 PI 202
            +
Sbjct: 556 SV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 34/154 (22%), Positives = 51/154 (33%), Gaps = 24/154 (15%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHL--LPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDL 141
            ++PD   +     + +D +   L  L    S   F  LQ L L  CE+  I       L
Sbjct: 24  SKVPDDIPSS---TKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGL 79

Query: 142 KTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGES 200
             L  L L G+ ++         LT L  L       L  +    I  L  L++L +  +
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHN 138

Query: 201 PIMWGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
            I               S       S LT+L  +
Sbjct: 139 FI--------------HSCKLPAYFSNLTNLVHV 158

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 29/179 (16%), Positives = 56/179 (31%), Gaps = 18/179 (10%)

Query: 86  RRIPDKFFTGMRELRVLDFA--RMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLK- 142
             +       +  L+ L+ A   +H   LP+      NL  + L Y  +  I  V DL+ 
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQF 175

Query: 143 ------TLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196
                   + L +  + ++ + ++  Q   L  L L   FN   I    + +L+ L    
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 197 IGESPIMWGKVGGVDGEGRNASLDELN----NLSKLTSLEILIEDEKTLPR----DLSF 247
           +        +   +        L ++      L+        I     L       L+ 
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 27/187 (14%)

Query: 92  FFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRG 151
               +  +  +      +  +   ++   N+  L L+  +L DI  + +LK L  L L  
Sbjct: 38  TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE 96

Query: 152 SDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVD 211
           + ++ L   +  L  L+ L L +   +  I    +  L QLE LY+G + I         
Sbjct: 97  NKIKDL-SSLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKI--------- 143

Query: 212 GEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDI 271
                  +  L+ L+KL +L +    E     D+     L +   L    +   +   D+
Sbjct: 144 -----TDITVLSRLTKLDTLSL----EDNQISDIVPLAGLTKLQNL----YLSKNHISDL 190

Query: 272 SGIFQLT 278
             +  L 
Sbjct: 191 RALAGLK 197

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 32/240 (13%), Positives = 74/240 (30%), Gaps = 49/240 (20%)

Query: 38  LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMR 97
           LK    + L  + I +L  + +  +LK   + +           N               
Sbjct: 86  LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH-----------N--------------- 119

Query: 98  ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKL 157
            +  +           + L     L++L L   ++ DI ++  L  L  L+L  + +  +
Sbjct: 120 GISDI-----------NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 168

Query: 158 VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNA 217
              +  LT L+ L LS   ++  +    ++ L  L+ L +     +             +
Sbjct: 169 -VPLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECLN------KPINHQS 218

Query: 218 SLDELNNLSKL--TSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIF 275
           +L   N +     + +   I  +       +    L  ++  +   +            F
Sbjct: 219 NLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 22/151 (14%), Positives = 44/151 (29%), Gaps = 4/151 (2%)

Query: 86  RRIPDKFFTGMRELRVLDFA--RMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKT 143
             + D        ++ LD     +  +           L+ L+L Y  + D+        
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK 192

Query: 144 LVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIM 203
           L  L L  + +  +  E      +  + L N   L +I    +     LE   +  +   
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNGFH 250

Query: 204 WGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
            G +     + +         + KLT     
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 43/334 (12%), Positives = 97/334 (29%), Gaps = 68/334 (20%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQNLQTLSLDYCELGDIAIVGDLKTL 144
           ++           ++ LD +   L  +  + L  F  L+ L+L    L +   +  L TL
Sbjct: 23  KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTL 82

Query: 145 VILTLRGSDMEKLVEEIGQLTHLRLLDLSNCF--------------------NLKVIPPN 184
             L L  +     V+E+     +  L  +N                       + ++   
Sbjct: 83  RTLDLNNN----YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL 138

Query: 185 VISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDEL----NNLSK------LTSLEIL 234
                S+++ L +  + I    V   +    + +L+ L    N +           L+ L
Sbjct: 139 DEGCRSRVQYLDLKLNEID--TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL 196

Query: 235 ---------IEDE-----------------KTLPRDLSFFKMLQRYSILIGDQWAWDSPS 268
                    +  E                   + + L F + L+ +  L G+ +   +  
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD-LRGNGFHCGTLR 255

Query: 269 DDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLE 328
           D  S   ++   +   +    G   +   +  L   G+   + +          +L  L+
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF----ADRLIALK 311

Query: 329 VVENSNLLCVVDTVDRATAPTTAFPVLESLFLRD 362
             E++ L       +R             +    
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALK 345

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 19/99 (19%)

Query: 137 IVGDLKTLVILTLRGSDMEKLVEEIGQ-LTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195
           I  +     I  +  S +++ +  + Q   +++ LDLS    L  I    ++  ++LE L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELL 63

Query: 196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
            +                  N  L E  +L  L++L  L
Sbjct: 64  NL----------------SSN-VLYETLDLESLSTLRTL 85

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 35/160 (21%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 45  SLKNSNISEL-PQVFEC-PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVL 102
            L ++ ++ +    F     L+   +++           N   R +    F G+  L  L
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSD-----------NAQLRSVDPATFHGLGRLHTL 110

Query: 103 DFARMHLLPLPSSLRLFQ---NLQTLSLDYCELGDIA--IVGDLKTLVILTLRGSDMEKL 157
              R  L  L     LF+    LQ L L    L  +      DL  L  L L G+ +  +
Sbjct: 111 HLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 158 VEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196
            E     L  L  L L     +  + P+    L +L  LY
Sbjct: 169 PERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLY 207

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 23/162 (14%)

Query: 48  NSNISELP-QVFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFA 105
           N+ +  +    F    +L   H+           +     + +    F G+  L+ L   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRC-------GL-----QELGPGLFRGLAALQYLYLQ 137

Query: 106 RMHLLPLPSSLRLFQ---NLQTLSLDYCELGDIA--IVGDLKTLVILTLRGSDMEKLVEE 160
              L  LP     F+   NL  L L    +  +       L +L  L L  + +  +   
Sbjct: 138 DNALQALPD--DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 161 I-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
               L  L  L L    NL  +P   ++ L  L+ L + ++P
Sbjct: 196 AFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 43/198 (21%), Positives = 68/198 (34%), Gaps = 55/198 (27%)

Query: 42  TAISLKNSNISELPQ-VFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
             I L  + IS +P   F  C  L    + ++    +          RI    FTG+  L
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSN---VL---------ARIDAAAFTGLALL 82

Query: 100 RVLDF---ARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEK 156
             LD    A++  +  P++      L TL LD C L ++              RG     
Sbjct: 83  EQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPG---------LFRG----- 127

Query: 157 LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRN 216
                  L  L+ L L +   L+ +P +    L  L  L++  + I              
Sbjct: 128 -------LAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRI-------------- 165

Query: 217 ASLDELNNLSKLTSLEIL 234
           +S+ E      L SL+ L
Sbjct: 166 SSVPE-RAFRGLHSLDRL 182

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 33/198 (16%)

Query: 36  DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTG 95
           DA       +LK  ++++     E   +      N   + +              +    
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--------------QGIQY 66

Query: 96  MRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDME 155
           +  +  L      L  +   L   +NL  L LD  ++ D++ + DLK L  L+L  + + 
Sbjct: 67  LPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 156 KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGR 215
            +   +  L  L  L L N   +  I    +S L++L+ L + ++ I             
Sbjct: 126 DI-NGLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS------------ 169

Query: 216 NASLDELNNLSKLTSLEI 233
              +  L  L+KL +L +
Sbjct: 170 --DIVPLAGLTKLQNLYL 185

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 33/192 (17%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
             I   NS+I  +  +   P +    +  +    I              K    ++ L  
Sbjct: 49  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--------------KPLANLKNLGW 94

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L      +  L SSL+  + L++LSL++  + DI  +  L  L  L L  + +  +   +
Sbjct: 95  LFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVL 152

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
            +LT L  L L +   +  I P  ++ L++L+ LY+ ++ I              + L  
Sbjct: 153 SRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHI--------------SDLRA 195

Query: 222 LNNLSKLTSLEI 233
           L  L  L  LE+
Sbjct: 196 LAGLKNLDVLEL 207

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 18/120 (15%)

Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
            S   F      +L    + D     +L ++  +    SD++ + + I  L ++  L L+
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLN 76

Query: 174 NCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEI 233
               L  I P  +++L  L  L++ E+ +                L  L +L KL SL +
Sbjct: 77  GN-KLTDIKP--LANLKNLGWLFLDENKV--------------KDLSSLKDLKKLKSLSL 119

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 22/142 (15%)

Query: 93  FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGS 152
              +  +  +      +  +   ++   N+  L L+  +L DI  + +LK L  L L  +
Sbjct: 42  QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN 100

Query: 153 DMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDG 212
            ++ L   +  L  L+ L L +   +  I    +  L QLE LY+G              
Sbjct: 101 KVKDL-SSLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLG-------------- 142

Query: 213 EGRNASLDELNNLSKLTSLEIL 234
              N  + ++  LS+LT L+ L
Sbjct: 143 ---NNKITDITVLSRLTKLDTL 161

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 37/253 (14%), Positives = 93/253 (36%), Gaps = 36/253 (14%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T + L  + ++++  +     L +  +  +  + +                   +++L+ 
Sbjct: 71  TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--------------SSLKDLKKLKS 116

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L      +  + + L     L++L L   ++ DI ++  L  L  L+L  + +  +   +
Sbjct: 117 LSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPL 174

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
             LT L+ L LS   ++  +    ++ L  L+ L +                  N  ++ 
Sbjct: 175 AGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQEC------------LNKPINH 219

Query: 222 LNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVAS 281
            +NL    +++   +     P  +S     ++ ++    +W     ++++S IF   V  
Sbjct: 220 QSNLVVPNTVK-NTDGSLVTPEIISDDGDYEKPNV----KWHLPEFTNEVSFIFYQPVTI 274

Query: 282 GANICLNGGHIMQ 294
           G       G + Q
Sbjct: 275 GKAKARFHGRVTQ 287

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 16/162 (9%)

Query: 42  TAISLKNSNISELPQ-VFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
           T + L+++ +  LP  VF+   QL    ++++                   +   G   L
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG----------CCSQSDFGTTSL 80

Query: 100 RVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVG---DLKTLVILTLRGSDMEK 156
           + LD +   ++ + S+    + L+ L   +  L  ++       L+ L+ L +  +    
Sbjct: 81  KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140

Query: 157 LVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
               I   L+ L +L ++     +   P++ + L  L  L +
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 9/117 (7%)

Query: 93  FTGMRELRVLDFARMHLLPLPSSLRLFQ---NLQTLSLDYCELGDI--AIVGDLKTLVIL 147
           F G+ +L  LDF   +L  +     +F    NL  L + +         I   L +L +L
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155

Query: 148 TLRGSDMEKLVEE--IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
            + G+  ++        +L +L  LDLS C  L+ + P   +SLS L+ L +  +  
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 32/179 (17%), Positives = 65/179 (36%), Gaps = 21/179 (11%)

Query: 44  ISLKNSNISELPQVFE-CPQLKYFHIANDPSRRIP-------------VHIANDPSRRIP 89
           + L  + +  +   F    QL++    +   +++              + I++  +R   
Sbjct: 83  LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 90  DKFFTGMRELRVLDFARMHLLP--LPSSLRLFQNLQTLSLDYCELGDIA--IVGDLKTLV 145
           +  F G+  L VL  A        LP      +NL  L L  C+L  ++      L +L 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 146 ILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSL-SQLEELYIGESPI 202
           +L +  ++   L       L  L++LD S   ++       +    S L  L + ++  
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 260

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 27/154 (17%), Positives = 65/154 (42%), Gaps = 6/154 (3%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDIA--IVGDLK 142
           R++P       R++ +L+   + +  + + +      +Q L + +  +  +   +  ++ 
Sbjct: 58  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 143 TLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
            L +L L  +D+  L   I      L  L +SN  NL+ I  +   + + L+ L +  + 
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR 176

Query: 202 IMWGKVGGVDG-EGRNASLDELNNLSKLTSLEIL 234
           +    +  +      N S + L+ L+   ++E L
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T + L+++N+++   +   P L    ++ +    +          +I    F  M+ L  
Sbjct: 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYN---EL---------EKIMYHPFVKMQRLER 276

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI-AIVGDLKTLVILTLRGSDMEKLVEE 160
           L  +   L+ L    +    L+ L L +  L  +         L  L L  + +  L  +
Sbjct: 277 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--K 334

Query: 161 IGQLTHLRLLDLSN----CFNLKVIPPNVISSLSQLEELY 196
           +     L+ L LS+    C +L+ +  NV        + +
Sbjct: 335 LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 78  VHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS-LRLFQNLQTLSLDYCELGDI- 135
           VHI               +   +++ F    +  LP++ L  F+ ++ L+L+  ++ +I 
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 136 -AIVGDLKTLVILTLRGSDMEKLVEEIGQ-LTHLRLLDLSNCFNLKVIPPNVISSLSQLE 193
                   T+  L +  + +  L   + Q +  L +L L    +L  +P  +  +  +L 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLT 144

Query: 194 ELY 196
            L 
Sbjct: 145 TLS 147

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 41/220 (18%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPSSLR---------------LFQNLQTLSLDYC 130
             +       +     + +  +  L +P ++                +   L  L L + 
Sbjct: 178 THVDLSLIPSLFHAN-VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236

Query: 131 ELGDIAIVGDLKTLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSL 189
            L D A + +   LV + L  +++EK++     ++  L  L +SN   L  +       +
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPI 294

Query: 190 SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE---KTLPRDLS 246
             L+ L +  + ++               ++   N  +   LE L  D     TL     
Sbjct: 295 PTLKVLDLSHNHLL--------------HVER--NQPQFDRLENLYLDHNSIVTLKLST- 337

Query: 247 FFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANIC 286
               L+  + L  + W  +S       + +  V      C
Sbjct: 338 -HHTLKNLT-LSHNDWDCNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDLKTLVILTLRGSDMEKLVE 159
           +D     +      + L  N + ++     +  +  A++   + + +L L    +E++  
Sbjct: 28  IDMQTQDVYFGFEDITL-NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86

Query: 160 EI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
                   ++ L +     ++ +PP+V  ++  L  L +
Sbjct: 87  YAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVL 124

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDIA--IVGDLK 142
             I  + F+G+  L  L   + +L  +P+ +L     L  L L +  +  I       L 
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 143 TLVILTLRGSD-MEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
            L +L +     ++ +        +L  L +++C NL  +P   +  L  L  L +  +P
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 202 I 202
           I
Sbjct: 260 I 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 19/168 (11%)

Query: 42  TAISLKNSNISELP-QVFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
             ++L+  N++ +P +       L    + +     I           I D  F  +  L
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRH---LNI---------NAIRDYSFKRLYRL 202

Query: 100 RVLDFARMHLLPLPSSLRLFQ-NLQTLSLDYCELGDIA--IVGDLKTLVILTLRGSDMEK 156
           +VL+ +    L   +   L+  NL +LS+ +C L  +    V  L  L  L L  + +  
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 157 LVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIM 203
           +   +  +L  L+ + L     L V+ P     L+ L  L +  + + 
Sbjct: 263 IEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 8/121 (6%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDIA--IVGDLK 142
             +P+   T   E R+LD  +  +  L       F +L+ L L+   +  +      +L 
Sbjct: 24  VAVPEGIPT---ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80

Query: 143 TLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
            L  L LR + ++ +   +   L++L  LD+S    + ++   +   L  L+ L +G++ 
Sbjct: 81  NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDND 139

Query: 202 I 202
           +
Sbjct: 140 L 140

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDI--AIVGDLK 142
           + +    F     L  L+     +  +   +     NL+TL L    L  I   +   L 
Sbjct: 45  KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104

Query: 143 TLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198
            L  L +  + +  L++ +   L +L+ L++ +  +L  I     S L+ LE+L + 
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLE 160

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 98  ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDLKTLVILTLRGSDME 155
           + R +   R   + +P    +    + L L    +  +          L  L L  + + 
Sbjct: 12  QDRAVLCHRKRFVAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 156 KLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGE 199
            +       L +LR L L +   LK+IP  V + LS L +L I E
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISE 113

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 21/116 (18%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDIA--IVGDLK 142
           R++P       R++ +L+   + +  + + +      +Q L + +  +  +   +  ++ 
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 143 TLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
            L +L L  +D+  L   I      L  L +SN  NL+ I  +   + + L+ L +
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQL 178

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 19/160 (11%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T + L+++N+++   +   P L    ++ +    +          +I    F  M+ L  
Sbjct: 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYN---EL---------EKIMYHPFVKMQRLER 282

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI-AIVGDLKTLVILTLRGSDMEKLVEE 160
           L  +   L+ L    +    L+ L L +  L  +         L  L L  + +  L  +
Sbjct: 283 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL--K 340

Query: 161 IGQLTHLRLLDLSN----CFNLKVIPPNVISSLSQLEELY 196
           +     L+ L LS+    C +L+ +  NV        + +
Sbjct: 341 LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 21/143 (14%)

Query: 93  FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGS 152
                 +  LD +   +  +   +     L  L L +  L D A + +   LV + L  +
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264

Query: 153 DMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVD 211
           ++EK++     ++  L  L +SN   L  +       +  L+ L +  + ++        
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIPTLKVLDLSHNHLL-------- 314

Query: 212 GEGRNASLDELNNLSKLTSLEIL 234
                  ++   N  +   LE L
Sbjct: 315 ------HVER--NQPQFDRLENL 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDLKTLVILTLRGSDMEKLVE 159
           +D     +      + L  N + ++     +  +  A++   + + +L L    +E++  
Sbjct: 34  IDMQTQDVYFGFEDITL-NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 92

Query: 160 EI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
                   ++ L +     ++ +PP+V  ++  L  L +
Sbjct: 93  YAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVL 130

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 16/170 (9%)

Query: 42  TAISLKNSNISEL-PQVFE-CPQLKYFHIANDPSRRIP---------VHIANDPSRRIPD 90
            A+ L N+ IS++  + F    +L+  +I+ +    IP         + I ++  R++P 
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPK 140

Query: 91  KFFTGMRELRVLDFARMHLLPLPSSLRLFQ--NLQTLSLDYCELGDIAIVGDLKTLVILT 148
             F+G+R +  ++     L         F    L  L +   +L  I      +TL  L 
Sbjct: 141 GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP-KDLPETLNELH 199

Query: 149 LRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
           L  + ++ +  E   + + L  L L +   +++I    +S L  L EL++
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHL 248

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 20/187 (10%)

Query: 45  SLKNSNISELPQ-VFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVL 102
            + ++ I ++P+ VF     +    +  +P       + N          F G++ L  L
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-------LENSG---FEPGAFDGLK-LNYL 177

Query: 103 DFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDLKTLVILTLRGSDMEKLVEE 160
             +   L  +P  L   + L  L LD+ ++  I    +     L  L L  + +  +   
Sbjct: 178 RISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 161 I-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASL 219
               L  LR L L N   L  +P   +  L  L+ +Y+  + I    V      G     
Sbjct: 236 SLSFLPTLRELHLDNN-KLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293

Query: 220 DELNNLS 226
              N +S
Sbjct: 294 AYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 22/162 (13%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGDI---AIVGDL 141
           + +P +         +LD     +  L     +  Q+L  L L   ++  I   A    L
Sbjct: 46  KAVPKEISPD---TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-L 101

Query: 142 KTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
           + L  L +  + + ++       + L  L + +   ++ +P  V S L  +  + +G +P
Sbjct: 102 RKLQKLYISKNHLVEIPP--NLPSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNP 158

Query: 202 IMWGKVGGVDGEGRNASLDEL----NNLSKL-----TSLEIL 234
           +         G      L+ L      L+ +      +L  L
Sbjct: 159 LENSGFE--PGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 20/160 (12%), Positives = 44/160 (27%), Gaps = 30/160 (18%)

Query: 42  TAISLKNSNISELPQ-VFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
             + L ++ I  +         +L    + +           N     I +   + +  L
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGH-----------NQIRM-IENGSLSFLPTL 243

Query: 100 RVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVE 159
           R L      L  +P+ L   + LQ + L    +  +               G +    V 
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV---------------GVNDFCPVG 288

Query: 160 EIGQLTHLRLLDLS-NCFNLKVIPPNVISSLSQLEELYIG 198
              +  +   + L  N      + P     ++    +  G
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 7/145 (4%)

Query: 85  SRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDLK 142
           S  I +  F GM++L  +  A  ++  +P    L  +L  L LD  ++  +  A +  L 
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLN 216

Query: 143 TLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
            L  L L  + +  +         HLR L L+N   L  +P   ++    ++ +Y+  + 
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGG-LADHKYIQVVYLHNNN 274

Query: 202 IMWGKVGGVDGEGRNASLDELNNLS 226
           I           G N      + +S
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVS 299

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 30/159 (18%), Positives = 66/159 (41%), Gaps = 22/159 (13%)

Query: 42  TAISLKNSNISELPQ-VFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
             + L+N+ I+E+    F+    L    + N+        I+      I    F  + +L
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLKNLHTLILINN-------KISK-----ISPGAFAPLVKL 102

Query: 100 RVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI--AIVGDLKTLVILTLRGSDMEKL 157
             L  ++  L  LP  +   + LQ L +   E+  +  ++   L  ++++ L  + ++  
Sbjct: 103 ERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 158 VEEIG---QLTHLRLLDLSNCFNLKVIPPNVISSLSQLE 193
             E G    +  L  + +++  N+  IP  +  SL++L 
Sbjct: 161 GIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELH 198

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 16/114 (14%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLV 145
             + +        LR L      L+ +P  L   + +Q + L    +  I          
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI---------- 278

Query: 146 ILTLRGSDMEKLVEEIGQLTHLRLLDLS-NCFNLKVIPPNVISSLSQLEELYIG 198
                GS+         +      + L  N      I P+    +     + +G
Sbjct: 279 -----GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 70/440 (15%), Positives = 137/440 (31%), Gaps = 66/440 (15%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGDI--AIVGDLK 142
             I          L+VL      +  +   +     +L+ L L    L  +  +  G L 
Sbjct: 39  TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98

Query: 143 TLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGES 200
           +L  L L G+  + L        LT+L+ L + N      I     + L+ L EL I   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 201 PIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD 260
            +            RN     L ++  +  L + + +   L     F  +L     L   
Sbjct: 159 SL------------RNYQSQSLKSIRDIHHLTLHLSESAFLLEI--FADILSSVRYL--- 201

Query: 261 QWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEG 320
                    ++                     M+    +   L    D            
Sbjct: 202 ---------ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL---TDESFNELLKLLRY 249

Query: 321 FPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFC 380
             +L  +E  + + L  + D     +   +    +E++ +R L ++ +       +  + 
Sbjct: 250 ILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRL-HIPQFYLFYDLSTVYS 307

Query: 381 QLRDMRV-----NGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSN 435
            L  ++      +   K+  V P    + L+ L+F++++E   ++         + +  +
Sbjct: 308 LLEKVKRITVENS---KVFLV-PCSFSQHLKSLEFLDLSENLMVEEYL-KNSACKGAWPS 362

Query: 436 TQVIELT--QLTILELCY-----LPQLT----SFCT-GDLHFEFPSLEKLRILECPQVKF 483
            Q + L+   L  ++        L  LT    S  T   +       EK+R L       
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL----- 417

Query: 484 KSS--IHESTKKVFPNLEYL 501
            SS  I      +   LE L
Sbjct: 418 -SSTGIRVVKTCIPQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 79  HIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS-LRLFQNLQTLSLDYCELGDIAI 137
           HI            ++ + +++ +      +  +P S  +  ++L+ L L    + +  +
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 138 -----VGDLKTLVILTLRG---SDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSL 189
                 G   +L  L L       M+K  E +  L +L  LD+S       +P +     
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS-CQWP 409

Query: 190 SQLEELYI 197
            ++  L +
Sbjct: 410 EKMRFLNL 417

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 18/110 (16%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 93  FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGS 152
                ++R L+ +   +  + + +   Q L+ L +    L   ++   L  L  L +  +
Sbjct: 406 CQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFSL--FLPRLQELYISRN 461

Query: 153 DMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
            ++ L  +      L ++ +S    LK +P  +   L+ L+++++  +P 
Sbjct: 462 KLKTL-PDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 32/196 (16%), Positives = 68/196 (34%), Gaps = 36/196 (18%)

Query: 44  ISLKNSNISELPQVF--ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           I+++NS +  +P  F      L++  ++ +      +                    L+ 
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK---------NSACKGAWPSLQT 365

Query: 102 LDFARMHLLPLPSSLRLFQ---NLQTLSLDYCELGDI-AIVGDLKTLVILTLRGSDMEKL 157
           L  ++ HL  +  +  +     NL +L +       +       + +  L L  + +  +
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425

Query: 158 VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNA 217
              I     L +LD+SN  NL          L +L+ELYI  + +               
Sbjct: 426 KTCI--PQTLEVLDVSNN-NLDSFSLF----LPRLQELYISRNKL--------------K 464

Query: 218 SLDELNNLSKLTSLEI 233
           +L + +    L  ++I
Sbjct: 465 TLPDASLFPVLLVMKI 480

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 18/201 (8%)

Query: 44  ISLKNSNISELPQ--VFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELR 100
           ++L  +    L    +F     L+   I N            +    I    F G+  L 
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGN-----------VETFSEIRRIDFAGLTSLN 151

Query: 101 VLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDI--AIVGDLKTLVILTLRGSDMEKL 157
            L+   + L    S SL+  +++  L+L   E   +       L ++  L LR +++ + 
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

Query: 158 VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVD-GEGRN 216
                 +  +        F   V+     + L +L    +  S + +        G+   
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP 271

Query: 217 ASLDELNNLSKLTSLEILIED 237
           +  D ++ L K+ ++ I    
Sbjct: 272 SESDVVSELGKVETVTIRRLH 292

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 25/176 (14%)

Query: 42  TAISLKNSNISELP-QVFE-CPQLKYFHIANDPSRRIP-------VHIANDPSRRIPDKF 92
             I L+ ++I+ +  Q F+   +L+   + ++    I        + ++ +    +P   
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 93  FTGMRELRVLDFARMHL--LPLPSSLRLFQNLQTLSLDYCELGDI---AIVGDLKTLVIL 147
            T      ++  +   L  L +   L    +LQ L L+              +  +L  L
Sbjct: 401 LT----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456

Query: 148 TLRGSDMEKLVEE------IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
            L  + ++   E          L+HL++L L++   L  +PP V S L+ L  L +
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSL 511

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 34/230 (14%), Positives = 84/230 (36%), Gaps = 47/230 (20%)

Query: 27  VPPTSWPDKDALKVCTAISLKNSNISELP-QVFE-CPQLKYFHIANDPSRRIPVHIANDP 84
           +    +     LKV   ++L  + I+++  + F     L+  +++ +    +        
Sbjct: 281 LNSRVFETLKDLKV---LNLAYNKINKIADEAFYGLDNLQVLNLSYN---LL-------- 326

Query: 85  SRRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDIAIVGDLKT 143
              +    F G+ ++  +D  + H+  +   + +  + LQTL L    L  I  +  +  
Sbjct: 327 -GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385

Query: 144 LV-----------------ILTLRGSDMEKLVEE--IGQLTHLRLLDLSNCFNLKVIPPN 184
           +                  ++ L  + +E L     + ++ HL++L L+           
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445

Query: 185 VISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
             S    LE+L++GE+ +          +    +    +    L+ L++L
Sbjct: 446 TPSENPSLEQLFLGENML----------QLAWETELCWDVFEGLSHLQVL 485

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 28/159 (17%), Positives = 67/159 (42%), Gaps = 16/159 (10%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDI--AIVGDLK 142
             +  + F  +++L+VL+ A   +  +   +     NLQ L+L Y  LG++  +    L 
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 143 TLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
            +  + L+ + +  + ++    L  L+ LDL +           I  +  + ++++  + 
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN------ALTTIHFIPSIPDIFLSGNK 392

Query: 202 IMWGKVGGVDGEGRNASLDELNNLS------KLTSLEIL 234
           ++      +     + S + L NL       ++  L+IL
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 16/185 (8%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHL---LPLPSSLRLFQNLQTLSLDYCELGDIAIVG--- 139
             +    F G+  L  L      L   +      R  + L  L L   ++  + +     
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145

Query: 140 DLKTLVILTLRGSDMEKLVEEI---GQLTHLRLLDLSNCFNLKVIPPNVISSLS-----Q 191
            L +L  +    + +  + E      Q   L    L+       +  +    ++      
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

Query: 192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKML 251
           LE L +  +       G        +    L     +        + K   ++   F  L
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT--FAGL 263

Query: 252 QRYSI 256
            R S+
Sbjct: 264 ARSSV 268

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 20/131 (15%)

Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
                  N    +L    + D+    +L  +       S+++ L   +   T+L+ L LS
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLS 71

Query: 174 NCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELN---------- 223
           +   +  + P  +  L++LEEL +  + +    + G+     +A L  L           
Sbjct: 72  HN-QISDLSP--LKDLTKLEELSVNRNRLK--NLNGIP----SACLSRLFLDNNELRDTD 122

Query: 224 NLSKLTSLEIL 234
           +L  L +LEIL
Sbjct: 123 SLIHLKNLEIL 133

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 35/193 (18%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
              +  NSNI  L  +     LK  H++++    +                   + +L  
Sbjct: 44  QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--------------SPLKDLTKLEE 89

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L   R  L  L         L  L LD  EL D   +  LK L IL++R + ++ +   +
Sbjct: 90  LSVNRNRLKNLNGIPSA--CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-VML 146

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
           G L+ L +LDL     +       ++ L ++  + +                      + 
Sbjct: 147 GFLSKLEVLDLHGN-EITNTGG--LTRLKKVNWIDLTGQKC---------------VNEP 188

Query: 222 LNNLSKLTSLEIL 234
           +    +L     +
Sbjct: 189 VKYQPELYITNTV 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGD-LKTL 144
                        L  L+  R  L  L     L   L TL L + +L  + ++G  L  L
Sbjct: 44  YTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-PVLGTLDLSHNQLQSLPLLGQTLPAL 102

Query: 145 VILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFN-LKVIPPNVISSLSQLEELY 196
            +L +  + +  L       L  L+ L L    N LK +PP +++   +LE+L 
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKLEKLS 154

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 3/109 (2%)

Query: 88  IPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVIL 147
           +P         L  L    ++     ++L  +  L  L+LD  EL  + + G L  L  L
Sbjct: 25  LPPDLPKDTTILH-LSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 148 TLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196
            L  + ++ L      L  L +LD+S    L  +P   +  L +L+ELY
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELY 130

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 20/160 (12%)

Query: 42  TAISLKNSNISELPQ-VFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
           T + L  + +            +L   ++      ++ V                 +  L
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--------------DGTLPVL 79

Query: 100 RVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIA--IVGDLKTLVILTLRGSDMEKL 157
             LD +   L  LP   +    L  L + +  L  +    +  L  L  L L+G++++ L
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 158 VEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196
              +      L  L L+N  NL  +P  +++ L  L+ L 
Sbjct: 140 PPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLL 178

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 9/124 (7%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ---NLQTLSLDYCELGDI--AIVGD 140
             I +        L+ L      +  +      F    +L+ L L Y  L ++  +    
Sbjct: 65  TYISNSDLQRCVNLQALVLTSNGINTIEE--DSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122

Query: 141 LKTLVILTLRGSDMEKLVEEI--GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198
           L +L  L L G+  + L E      LT L++L + N      I     + L+ LEEL I 
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 199 ESPI 202
            S +
Sbjct: 183 ASDL 186

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 23/189 (12%), Positives = 58/189 (30%), Gaps = 29/189 (15%)

Query: 27  VPPTSWPDKDALKVCTAISLKNSNISELP-QVFE-CPQLKYFHIANDPSRRIP------- 77
           +  TS       K+           +++  + F     L+   I     +          
Sbjct: 139 LGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197

Query: 78  -----VHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCEL 132
                + +       + + F      +  L+     L             +T SL     
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH--FSELSTGETNSLI---- 251

Query: 133 GDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL 192
                     T   + +    + ++++ + Q++ L  L+ S    LK +P  +   L+ L
Sbjct: 252 -------KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSL 303

Query: 193 EELYIGESP 201
           +++++  +P
Sbjct: 304 QKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 25/171 (14%)

Query: 42  TAISLKNSNISELPQ-VFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
            ++ L N+ I+ +     + C  L+   + ++        I       I +  F+ +  L
Sbjct: 55  KSLDLSNNRITYISNSDLQRCVNLQALVLTSN-------GINT-----IEEDSFSSLGSL 102

Query: 100 RVLDFARMHLLPLPSSLRLFQ---NLQTLSLDYC---ELGDIAIVGDLKTLVILTLRGSD 153
             LD +  +L  L SS   F+   +L  L+L       LG+ ++   L  L IL +   D
Sbjct: 103 EHLDLSYNYLSNLSSSW--FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160

Query: 154 MEKLVEE--IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
               ++      LT L  L++    +L+   P  + S+  +  L +     
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQH 210

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 69/236 (29%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T + + ++N++ LP +   P+L+   ++ +    +PV                 + EL +
Sbjct: 64  TTLVIPDNNLTSLPALP--PELRTLEVSGNQLTSLPVLPPG-------------LLELSI 108

Query: 102 LDFARMHLLPLPSSLR--------------LFQNLQTLSLDYCELGDI-AIVGDLKTL-- 144
                 HL  LPS L               L   LQ LS+   +L  + A+  +L  L  
Sbjct: 109 FSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWA 168

Query: 145 ---------------VILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSL 189
                            L++  + +  L     +L  L   +      L  +P    +  
Sbjct: 169 YNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLP----ALP 220

Query: 190 SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLS----KLTSLEILIEDEKTL 241
           S L+EL +  + +                  EL  L     +LTSL +L     +L
Sbjct: 221 SGLKELIVSGNRL----------TSLPVLPSELKELMVSGNRLTSLPMLPSGLLSL 266

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 35/210 (16%), Positives = 58/210 (27%), Gaps = 60/210 (28%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
             +++  S ++ LP       +    I ++    +P                     LR 
Sbjct: 43  AVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPALPPE----------------LRT 85

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L+ +   L  LP        L   S     L  +        L  L + G+ +  L    
Sbjct: 86  LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-----PSGLCKLWIFGNQLTSLPVLP 140

Query: 162 GQLTHLRL-----------------LDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMW 204
             L  L +                 L   N   L  +P       S L+EL + ++ +  
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKLWAYNN-QLTSLPM----LPSGLQELSVSDNQL-- 193

Query: 205 GKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
                       ASL  L   S+L  L   
Sbjct: 194 ------------ASLPTL--PSELYKLWAY 209

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 26/152 (17%)

Query: 99  LRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLV 158
             VL+     L  LP  L    ++ TL +    L  +        L  L + G+ +  L 
Sbjct: 42  NAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLP 97

Query: 159 EEIGQLTHLRLLDLSNCFNLKVIPPNVIS-------------SLSQLEELYIGESPIMWG 205
                L  L +       +L  +P  +                   L+EL + ++ +   
Sbjct: 98  VLPPGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL--- 153

Query: 206 KVGGVDGEGRN-ASLDELNNLSKLTSLEILIE 236
               +         L   NN  +LTSL +L  
Sbjct: 154 --ASLPALPSELCKLWAYNN--QLTSLPMLPS 181

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 32/216 (14%), Positives = 65/216 (30%), Gaps = 29/216 (13%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
             +S+ ++ ++ LP +    +L      N+    +P   +                 L+ 
Sbjct: 184 QELSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPALPSG----------------LKE 225

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L  +   L  LP        L+ L +    L  + ++     L+ L++  + + +L E +
Sbjct: 226 LIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESL 280

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
             L+    ++L     L       +  ++     Y G              E R   L  
Sbjct: 281 IHLSSETTVNLEGN-PLSERTLQALREITSA-PGYSGPIIRFDMAGASAPRETRALHLAA 338

Query: 222 LNNLSKLTSLEILIEDE----KTLPRDLSFFKMLQR 253
            + L      E    D            +F   L R
Sbjct: 339 ADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDR 374

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 22/214 (10%)

Query: 42  TAISLKNSNISELPQ-VFE-CPQLKYFHIA-NDPSRRIPVH------------IANDPS- 85
             +    + +  + +  F     L+   I+ ND    I               I    + 
Sbjct: 33  IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLF-QNLQTLSLDY----CELGDIAIVGD 140
             I  + F  +  L+ L  +   +  LP   ++       L +        +   + VG 
Sbjct: 93  LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152

Query: 141 LKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGES 200
               VIL L  + ++++       T L  L+LS+  NL+ +P +V    S    L I  +
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212

Query: 201 PIMWGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
            I      G++   +  +     NL KL +LE L
Sbjct: 213 RIHSLPSYGLENLKKLRARS-TYNLKKLPTLEKL 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 59/374 (15%), Positives = 105/374 (28%), Gaps = 91/374 (24%)

Query: 113 PSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDL 172
             S      L +L      + D+  +  L  L  L    +++  L  ++ Q T+L  L  
Sbjct: 35  TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL--DLSQNTNLTYLAC 92

Query: 173 SNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELN-NLSKLTSL 231
            +   L  +    ++ L++L  L    + +            +N  L  LN   + LT +
Sbjct: 93  DSN-KLTNLD---VTPLTKLTYLNCDTNKL------TKLDVSQNPLLTYLNCARNTLTEI 142

Query: 232 EILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGH 291
                       D+S    L      +  +        D++   QLT    +   +    
Sbjct: 143 ------------DVSHNTQLTELDCHLNKK----ITKLDVTPQTQLTTLDCSFNKITELD 186

Query: 292 IMQLKGIKELCLGG----SLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATA 347
           + Q K +  L         LD+             QL  L+   N               
Sbjct: 187 VSQNKLLNRLNCDTNNITKLDL---------NQNIQLTFLDCSSNK-------------- 223

Query: 348 PTTAFPVLESLFLRDLRNLEKI-CRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQ 406
                  L  + +  L  L    C       S   L ++ V+   KL  +          
Sbjct: 224 -------LTEIDVTPLTQLTYFDC-------SVNPLTELDVSTLSKLTTLHC-----IQT 264

Query: 407 QLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLP--QLTSFCTGDLH 464
            L  I++T    L                 + +++T  T L L       +T        
Sbjct: 265 DLLEIDLTHNTQLIYF------QAEGCRKIKELDVTHNTQLYLLDCQAAGITE------- 311

Query: 465 FEFPSLEKLRILEC 478
            +     KL  L  
Sbjct: 312 LDLSQNPKLVYLYL 325

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 41/193 (21%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T++   NS+I+++  + +   L      ++    +                 +    L  
Sbjct: 45  TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---------------LSQNTNLTY 89

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L      L  L   +     L  L+ D  +L  + +      L  L    + + ++  ++
Sbjct: 90  LACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDV-SQNPLLTYLNCARNTLTEI--DV 144

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
              T L  LD      +  +    ++  +QL  L                       + E
Sbjct: 145 SHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDC-----------------SFNKITE 184

Query: 222 LNNLSKLTSLEIL 234
           L ++S+   L  L
Sbjct: 185 L-DVSQNKLLNRL 196

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 38/190 (20%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV 101
           T +   ++ ++E+  V    QL YF  + +P   +                 + + +L  
Sbjct: 215 TFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD---------------VSTLSKLTT 258

Query: 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI 161
           L   +  LL +  +      L     + C       V     L +L  + + + +L  ++
Sbjct: 259 LHCIQTDLLEIDLTH--NTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL--DL 314

Query: 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDE 221
            Q   L  L L+N   L  +    +S  ++L+ L    + I                   
Sbjct: 315 SQNPKLVYLYLNNT-ELTELD---VSHNTKLKSLSCVNAHIQ--------------DFSS 356

Query: 222 LNNLSKLTSL 231
           +  +  L + 
Sbjct: 357 VGKIPALNNN 366

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 31/211 (14%), Positives = 62/211 (29%), Gaps = 35/211 (16%)

Query: 42  TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPV---------HIANDPSRRIPDKF 92
           T +    +       V    QL     + +    + V         +   +   ++    
Sbjct: 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD--- 207

Query: 93  FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGS 152
                +L  LD +   L  +   +     L         L ++  V  L  L  L    +
Sbjct: 208 LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL-DVSTLSKLTTLHCIQT 264

Query: 153 DMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDG 212
           D+ ++  ++   T L       C  +K +    ++  +QL  L    + I    +     
Sbjct: 265 DLLEI--DLTHNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGITELDLSQ--- 316

Query: 213 EGRNASLDELN---------NLSKLTSLEIL 234
              N  L  L          ++S  T L+ L
Sbjct: 317 ---NPKLVYLYLNNTELTELDVSHNTKLKSL 344

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 19/162 (11%)

Query: 88  IPDKFFTGMRELRVLDFARMHLLPLPSSL--RLFQNLQTLSLDYCELGDI--AIVGDLKT 143
           +P K F  + +LR+L      L  LP+ +   L +NL+TL +   +L  +   +   L  
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTDNKLQALPIGVFDQLVN 110

Query: 144 LVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
           L  L L  + ++ L   +   LT L  L L     L+ +P  V   L+ L+EL +  + +
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQL 169

Query: 203 MWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRD 244
                G  D             L++L +L++     K +P  
Sbjct: 170 KRVPEGAFDK------------LTELKTLKLDNNQLKRVPEG 199

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 32/142 (22%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPS----------SLRLFQN-------------- 121
           R +    F    EL+VLD +R  +  +            +L L  N              
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 122 -LQTLSLDYCELGDIAIV--GDLKTLVILTLRGSDMEKLVEEIG---QLTHLRLLDLSNC 175
            LQ L      L  +     G LKTL  L +  + ++   +       LT+L  LDLS+ 
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSN 159

Query: 176 FNLKVIPPNVISSLSQLEELYI 197
             ++ I    +  L Q+  L +
Sbjct: 160 -KIQSIYCTDLRVLHQMPLLNL 180

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 41/151 (27%), Positives = 54/151 (35%), Gaps = 22/151 (14%)

Query: 88  IPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVG---DLKTL 144
           IPD      + L  L F  +  L    S   F  LQ L L  CE+  I   G    L  L
Sbjct: 22  IPDNLPFSTKNLD-LSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHL 78

Query: 145 VILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIM 203
             L L G+ ++ L       L+ L+ L      NL  +    I  L  L+EL +  + I 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLI- 136

Query: 204 WGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
                         S       S LT+LE L
Sbjct: 137 -------------QSFKLPEYFSNLTNLEHL 154

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 11/127 (8%)

Query: 84  PSRRIPDKFFTGMRELRVLDFARMHL--LPLPSSLRLFQNLQTLSLDYCELGDIAIVGDL 141
               + +     ++ L+ L+ A   +    LP       NL+ L L   ++  I    DL
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDL 169

Query: 142 KTLVILT-------LRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE 194
           + L  +        L  + M  +     +   L+ L L     LK +P  +   L+ L++
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQK 228

Query: 195 LYIGESP 201
           +++  +P
Sbjct: 229 IWLHTNP 235

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 89  PDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDI--AIVGDLKTLV 145
            +   T +  L  L  +  HL  + S +     NL+ L L    L  +   +  DL+ L 
Sbjct: 56  AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115

Query: 146 ILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195
           +L L  + +  +       +  L+ L LS    +   P  +I   ++L +L
Sbjct: 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKL 165

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 34/159 (21%)

Query: 42  TAISLKNSNISELP-QVFE-CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
            ++ L +++++ +  + F   P L+Y  ++++    +           + +  F+ ++ L
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN---HL---------HTLDEFLFSDLQAL 114

Query: 100 RVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLV 158
            VL     H++ +   +      LQ L L   ++                       +L+
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP------------------VELI 156

Query: 159 EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
           ++  +L  L LLDLS+   LK +P   +  L    +  +
Sbjct: 157 KDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 23/115 (20%)

Query: 88  IPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVIL 147
           +P    +    L  L    +  L    +     NL +L L +  L  I+           
Sbjct: 33  VPQSLPSYTALLD-LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS---------E 82

Query: 148 TLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
                           + +LR LDLS+  +L  +   + S L  LE L +  + I
Sbjct: 83  AFVP------------VPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHI 124

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 23/184 (12%)

Query: 42  TAISLKNSNISELPQ-VFE-CPQLKYFHIA-NDPSRRIPVH------------IANDPS- 85
             + L  +++  +P   F   P +   +++ +   +++  H            I N  + 
Sbjct: 34  QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCE------LGDIAIVG 139
             I       +  L+ L      L   P   +++       L+  +      +   A  G
Sbjct: 94  TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153

Query: 140 DLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSL-SQLEELYIG 198
                + L L  +    +       T L  + L+    L VI  +    + S    L + 
Sbjct: 154 LCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 199 ESPI 202
           ++ +
Sbjct: 214 QTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 20/119 (16%)

Query: 121 NLQTLSLDYCELGDI---AIVGDLKTLVILTLRGSDMEKLVEE--IGQLTHLRLLDLSNC 175
           + QTL L    L  I   A    L  +  + +      + +E      L+ +  +++ N 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 176 FNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEIL 234
            NL  I P+ +  L  L+ L I  + +                  +L  +       IL
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGL--------------KMFPDLTKVYSTDIFFIL 135

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 112 LPSSLRLFQNLQTLSLDYCEL-GDIAI---VGDLKTLVILTLRGSDMEKLV----EEIGQ 163
           L  +      +  L L    L     I   + +L  L  L +    +  LV      I +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAK 99

Query: 164 LTHLRLLDLSNCFNLK-VIPPNVISSLSQLEELYIGE 199
           LT L  L +++  N+   IP   +S +  L  L    
Sbjct: 100 LTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSY 134

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 21/128 (16%)

Query: 73  SRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL--PLPSSLRLFQNLQTLSLDYC 130
              IP  +AN             +  L  L    ++ L  P+P ++     L  L + + 
Sbjct: 65  PYPIPSSLAN-------------LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 131 EL-GDI-AIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLSNCFNLK-VIPPNVI 186
            + G I   +  +KTLV L    + +   L   I  L +L  +       +   IP +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-Y 169

Query: 187 SSLSQLEE 194
            S S+L  
Sbjct: 170 GSFSKLFT 177

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 99  LRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKL- 157
           +  LD +   L  LP +L   + L+ L      L ++  V +L  L  L L  + +++  
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 158 -VEEIGQLTHLRLLDLSN--CFNLKVIPPNVISSLSQLEEL 195
            ++ +     L LL+L        + I   +   L  +  +
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 29/158 (18%)

Query: 108 HLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKL---------V 158
            LL    +L+ F  L+ +        D      L    +L +  +D+  L         +
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL 456

Query: 159 EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNAS 218
             + QL  +  LDLS+   L+ +PP  +++L  LE L   ++ +               +
Sbjct: 457 CHLEQLLLVTHLDLSHN-RLRALPPA-LAALRCLEVLQASDNAL--------------EN 500

Query: 219 LDELNNLSKLTSLEI---LIEDEKTLPRDLSFFKMLQR 253
           +D + NL +L  L +    ++    + + L     L  
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVL 537

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 50/416 (12%), Positives = 105/416 (25%), Gaps = 69/416 (16%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLV 145
           + +    F   +EL  LD +   L+ +        NL+ L L +     + I        
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLKHLDLSFNAFDALPICK------ 109

Query: 146 ILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWG 205
                         E G ++ L+ L LS   +L+      I+ L+  + L +        
Sbjct: 110 --------------EFGNMSQLKFLGLSTT-HLEKSSVLPIAHLNISKVLLVLGET---- 150

Query: 206 KVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWD 265
                         ++   L    +  + I            F  +   S+         
Sbjct: 151 ----------YGEKEDPEGLQDFNTESLHIVF-----PTNKEFHFILDVSVKTVANLELS 195

Query: 266 SPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLK 325
           +    +         S          +  L          +L+     + S       + 
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNL----------TLNNIETTWNSFIRILQLVW 245

Query: 326 HLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDM 385
           H  V   S     +           +   L++L +  + +           E F  +   
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 386 RVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLT 445
                     +  ++    +     ++ +     D +F                 LT+L 
Sbjct: 306 NFTVSG--TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH------------LTELE 351

Query: 446 ILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHESTKKVFPNLEYL 501
            L L    QL       +      ++ L+ L+  Q        +       +L  L
Sbjct: 352 TLILQM-NQLKEL--SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 20/111 (18%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 93  FTGMRELRVLDFARMHL--LPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLR 150
            T M+ L+ LD ++  +            ++L +L++    L D         + +L L 
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429

Query: 151 GSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
            + ++ + +++ +L  L+ L++++   LK +P  +   L+ L+++++  +P
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 8/127 (6%)

Query: 79  HIANDPSRRIPDKFFTGMRELRV--LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIA 136
            + +D         +     + +     +   ++ +    ++      L      L D  
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI-SPFLHLDFSNNLLTDTV 340

Query: 137 --IVGDLKTLVILTLRGSDMEKLVEEIG---QLTHLRLLDLSNCFNLKVIPPNVISSLSQ 191
               G L  L  L L+ + +++L +      Q+  L+ LD+S             S    
Sbjct: 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400

Query: 192 LEELYIG 198
           L  L + 
Sbjct: 401 LLSLNMS 407

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 32/222 (14%), Positives = 66/222 (29%), Gaps = 30/222 (13%)

Query: 41  CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELR 100
              + + N+ ++ LP+      L+Y +  N+    +P    +                L 
Sbjct: 122 LKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPELPTS----------------LE 163

Query: 101 VLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI-AIVGDLKTL----VILTLRGSDME 155
           VL      L  LP      ++L+ L +    L  + A+           +    R + + 
Sbjct: 164 VLSVRNNQLTFLPELP---ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 156 KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGR 215
            + E I  L     + L +   L       +S  +  +  Y G         G  +   R
Sbjct: 221 HIPENILSLDPTCTIILEDN-PLSSRIRESLSQQT-AQPDYHGPRIYFSMSDGQQNTLHR 278

Query: 216 NASLDELNNLSKLTSLEI--LIEDEKTLPRDLSFFKMLQRYS 255
             +        +    ++  +    +      +F   L R S
Sbjct: 279 PLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLS 320

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 88  IPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVIL 147
           +PD       ++ VL+  +  L+ LP       +L+ L      L  +       +L  L
Sbjct: 74  LPDNLPP---QITVLEITQNALISLPELP---ASLEYLDACDNRLSTLP--ELPASLKHL 125

Query: 148 TLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPI 202
            +  + +  L E    L +   ++  N   L ++P       + LE L +  + +
Sbjct: 126 DVDNNQLTMLPELPALLEY---INADNN-QLTMLP----ELPTSLEVLSVRNNQL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 13/114 (11%)

Query: 87  RIPDKFFTGMRELRVLDFARMHLLPLPSSLR--LFQNLQTLSLDYCELGDI-AIVGDLKT 143
                +F+   +         +     S L+  L      L L+   L  +   +     
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP--PQ 81

Query: 144 LVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
           + +L +  + +  L E    L +L   D      L  +P       + L+ L +
Sbjct: 82  ITVLEITQNALISLPELPASLEYLDACDN----RLSTLPE----LPASLKHLDV 127

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 112 LPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLD 171
           + ++L   +  + L+L    +  I+ +  ++ L IL+L  + ++K+         L  L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99

Query: 172 LSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSL 231
           +S    +  +    I  L  L  LY+  + I               +  E++ L+ L  L
Sbjct: 100 ISYN-QIASLSG--IEKLVNLRVLYMSNNKI--------------TNWGEIDKLAALDKL 142

Query: 232 EIL 234
           E L
Sbjct: 143 EDL 145

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 116 LRLFQNLQTLSLDYCELGDIAIVGDL-KTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSN 174
           L   +NL+ LSL    +  I  +  +  TL  L +  + +  L   I +L +LR+L +SN
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSN 124

Query: 175 CF--NLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEG-RNASLDELNNLSKL 228
               N   I  + +++L +LE+L +  +P+             R   +  L NL KL
Sbjct: 125 NKITNWGEI--DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 90  DKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTL 149
           ++  + ++EL VLD +R +   L      F+ L+ LS     L  IA +  L  L  L L
Sbjct: 13  NRTPSDVKEL-VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLEL 71

Query: 150 RGSDMEKLVEEIGQ-LTHLRLLDLSNCF--NLKVIPPNVISSLSQLEELYIGESPI 202
             + +   +E + +   +L  L+LS     +L  I    +  L  L+ L +    +
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI--EPLKKLENLKSLDLFNCEV 125

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 90  DKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTL 149
           ++    +REL VLD  + +   +      F NL+ LSL    L  ++ +  L  L  L L
Sbjct: 20  NRTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLEL 78

Query: 150 RGSDMEKLVEEIGQ-LTHLRLLDLSNCF--NLKVIPPNVISSLSQLEELYIGESPI 202
             + +   ++ + + L +L  L+LS     ++  +    +  L  L+ L +    +
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL--EPLKKLECLKSLDLFNCEV 132

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 32/205 (15%)

Query: 42  TAISLKNSNISEL-PQVFEC-PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
             + L  ++I+EL    F     L++  +               P   I +  F G+  L
Sbjct: 33  NYVDLSLNSIAELNETSFSRLQDLQFLKVEQ-----------QTPGLVIRNNTFRGLSSL 81

Query: 100 RVLDFARMHLLPLPSS-LRLFQNLQTLSLDYCELGDIAIVGD----LKTLVILTLRGSDM 154
            +L       L L +       NL+ L+L  C L    + G+    L +L +L LR +++
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 155 EKLVEEI--GQLTHLRLLDLSNCFN-LKVIPPNVISSL--SQLEELYIGESPIMWGKVGG 209
           +K+        +    +LDL+   N +K I    + +        L +    +       
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTF--NKVKSICEEDLLNFQGKHFTLLRLSSITL------- 192

Query: 210 VDGEGRNASLDELNNLSKLTSLEIL 234
            D        ++  N  K TS+  L
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTL 217

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ---NLQTLSLDYCELGDI--AIVGD 140
             +    F+   +L  L  A+  +  +      F    +L  L+L    LG I   +  +
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDD--NAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345

Query: 141 LKTLVILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGE 199
           L  L +L L  + +  L ++    L +L+ L L     LK +P  +   L+ L+++++  
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 404

Query: 200 SP 201
           +P
Sbjct: 405 NP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 99  LRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGDIAIVG---DLKTLVILTLRGSDM 154
           +  +D +   +  L   S    Q+LQ L ++    G +        L +L+IL L  +  
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 155 EKLVEEI-GQLTHLRLLDLSNC-FNLKVIPPNVISSLSQLEELY 196
            +L       L +L +L L+ C  +  V+  N    L+ LE L 
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 57/399 (14%), Positives = 117/399 (29%), Gaps = 44/399 (11%)

Query: 113 PSSLRLFQNLQTLSLDYCELGDIAIV--GDLKTLVILTLRGSDMEKLVEEIGQLTHLRLL 170
              +     L+ L L +  +  +        + L  L +  + ++ +      +  LR L
Sbjct: 69  MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI--SCCPMASLRHL 126

Query: 171 DLSNCFN-LKVIPPN-VISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKL 228
           DLS   N   V+P      +L++L  L +  +      +  V      A L     L  L
Sbjct: 127 DLSF--NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV------AHLHLSCILLDL 178

Query: 229 TSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLN 288
            S  I    +      L        + +   +       +  ++ +  L +   +NI LN
Sbjct: 179 VSYHI----KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL---SNIKLN 231

Query: 289 GGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLL------CVVDTV 342
             +  +L         G   +   L          +K  +      +         +   
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291

Query: 343 DRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIG 402
                 T +   L+SL +  ++N   +         F ++    ++  D       +V  
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD--TPFIHMVCP 349

Query: 403 RGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGD 462
                  F+  T+    D +F                 L +L  L L     L +F    
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCST------------LKRLQTLILQR-NGLKNF--FK 394

Query: 463 LHFEFPSLEKLRILECPQVKFKSSIHESTKKVFPNLEYL 501
           +     ++  L  L+       S  ++ T     ++  L
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 24/165 (14%), Positives = 60/165 (36%), Gaps = 17/165 (10%)

Query: 42  TAISLKNSNISELP-QVFEC-PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMREL 99
           T ++   +  ++   Q      +L+   +  +  +                     M  L
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA----------LMTKNMSSL 405

Query: 100 RVLDFARMHLLPLPSSL--RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKL 157
             LD +   L            +++  L+L    L           + +L L  + +  +
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI 465

Query: 158 VEEIGQLTHLRLLDLSNCFN-LKVIPPNVISSLSQLEELYIGESP 201
            +++  L  L+ L++++  N LK +P  V   L+ L+ +++ ++P
Sbjct: 466 PKDVTHLQALQELNVAS--NQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 71/510 (13%), Positives = 148/510 (29%), Gaps = 88/510 (17%)

Query: 38  LKVCTAISLKNSNISELPQVFE---------CPQLKYFHIANDPSRRIPVHIANDPSRRI 88
           LK     ++ N                      QLK  H          + +++    R+
Sbjct: 80  LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRR-------MIVSDLDLDRL 132

Query: 89  PDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDI------AIVGDLK 142
                  +  L++   +      L S +   + ++TL ++     +        +     
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 143 TLVILTLRGSDMEKL----VEEIGQ-LTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
           +L +L    ++  K+    +E I +    L  + + +   L+++      + + LEE   
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV--GFFKAAANLEEFCG 250

Query: 198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQ----R 253
           G            +  G       L    KL  L +       +P    F   ++     
Sbjct: 251 GSL---------NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301

Query: 254 YSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGG--HIMQL-KGIKELCLGGSLDMK 310
           Y++L  +          I     L V    N+  + G   + Q  K +K L +    D +
Sbjct: 302 YALLETEDHCT-----LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356

Query: 311 SVLYGSH----------GEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFL 360
            +                +G  +L+++       +     T +   +  T    L    L
Sbjct: 357 GMEDEEGLVSQRGLIALAQGCQELEYM------AVYVSDITNESLESIGTYLKNLCDFRL 410

Query: 361 RDLRNLEKICRGPL------AAESFCQLRDMRVN-GCDKLKNVFPLVIGRGLQQLQFIEV 413
             L   E+I   PL            +LR          L ++    IG+    ++++ +
Sbjct: 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470

Query: 414 TECQNLDV-IFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEK 472
                 D  +    RG               L  LE+      +         + PSL  
Sbjct: 471 GYVGESDEGLMEFSRG------------CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRY 517

Query: 473 LRILECPQVKFKSSIHESTKKVFPNLEYLS 502
           L +    +            + + N+E + 
Sbjct: 518 LWVQGY-RASMTGQDLMQMARPYWNIELIP 546

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 61/426 (14%), Positives = 124/426 (29%), Gaps = 79/426 (18%)

Query: 100 RVLDFARMHLLPLPSSLRLFQNLQTLSLDYC-----------------ELGDIAIVGDLK 142
             +  A  +        R F NL++L L                          I  +L+
Sbjct: 53  EHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112

Query: 143 TLVILTLRG-----SDMEKLVEEIGQLTHLRLLDLSNCFNLK-VIPPNVISSLSQLEELY 196
            L  +  R       D+++L +   +   L  L L  C         ++++   +++ L 
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAK--ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170

Query: 197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQ-RYS 255
           + ES         +    ++ +  E+ N       +I  +D +T+ R+      ++    
Sbjct: 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230

Query: 256 ILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYG 315
            ++             + + +    S           M L   ++LC  G   M      
Sbjct: 231 EILELV----GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP 286

Query: 316 SHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRD------LRNLEKI 369
                  Q++ L      +LL  +   +         P LE L  R+      L  L + 
Sbjct: 287 ILFPFAAQIRKL------DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340

Query: 370 CRGPLAAESFCQLRDMRVNGCDKLKNVFPLV----------IGRGLQQLQFIEVTECQNL 419
           C+         QL+ +R+      + +              + +G Q+L+++ V    ++
Sbjct: 341 CK---------QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDI 390

Query: 420 DVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEF-------PSLEK 472
                    +ES  S      L  L    L  L +        L             L +
Sbjct: 391 --------TNESLESIGTY--LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440

Query: 473 LRILEC 478
                 
Sbjct: 441 FAFYLR 446

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 9/122 (7%)

Query: 86  RRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ---NLQTLSLDYCELGDI--AIVGD 140
           + IP   F+  ++LR +D +   +  L      FQ   +L +L L   ++ ++  ++   
Sbjct: 45  KVIPPGAFSPYKKLRRIDLSNNQISELAP--DAFQGLRSLNSLVLYGNKITELPKSLFEG 102

Query: 141 LKTLVILTLRGSDMEKLVEEIGQ-LTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGE 199
           L +L +L L  + +  L  +  Q L +L LL L +   L+ I     S L  ++ +++ +
Sbjct: 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 200 SP 201
           +P
Sbjct: 162 NP 163

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 93  FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGS 152
           +T     R LD     +  + +          +     E+  +     L+ L  L +  +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 153 DMEKLVEEIGQ-LTHLRLLDLSNCF--NLKVIPPNVISSLSQLEELYIGESPI 202
            + ++ E + Q L  L  L L+N     L  +  + ++SL  L  L I  +P+
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDL--DPLASLKSLTYLCILRNPV 125

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 88  IPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVG---DLKTL 144
           IP+       ELR L+     +L      +    L+ ++    ++ DI   G       +
Sbjct: 26  IPEHIPQYTAELR-LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGV 83

Query: 145 VILTLRGSDMEKLVEEI-GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
             + L  + +E +  ++   L  L+ L L +   +  +  +    LS +  L +
Sbjct: 84  NEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSL 136

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 19/115 (16%)

Query: 119 FQNLQTLSLDYCELGD-----IAIVGDLKTLVIL-----TLRGSDMEKLVEEIGQLTHLR 168
           F NL+ L +   E  +           L  L  +      L       L++ + ++ HL+
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 169 LLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELN 223
            +++   +    +   +   L +   + I  S          D +     + EL 
Sbjct: 311 FINMKYNY----LSDEMKKELQKSLPMKIDVSDSQEY-----DDDYSYPMITELE 356

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	508
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.68
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.47
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.41
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.28
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.26
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.25
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.23
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.19
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.16
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.95
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.88
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.86
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.74
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.7
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.62
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.6
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.12
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.83
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.83
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.81
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.47
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.01
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.95
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	90.83

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=7.8e-29  Score=261.16  Aligned_cols=429  Identities=18%  Similarity=0.158  Sum_probs=228.9

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-  112 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-  112 (508)
                      ++++++++|++++|.+.+++.  +..+++|++|++++|.            +..++...|.++++|++|++++|.++.+ 
T Consensus        29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~   96 (606)
T 3vq2_A           29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE------------IETIEDKAWHGLHHLSNLILTGNPIQSFS   96 (606)
T ss_dssp             TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------------CCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred             CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc------------ccccCHHHhhchhhcCEeECCCCcccccC
Confidence            466889999999999987765  4499999999999943            3344444457888888888888888765 


Q ss_pred             chhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCch--hhHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733          113 PSSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDME--KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS  188 (508)
Q Consensus       113 ~~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  188 (508)
                      |..|+++++|++|++++|.++. + ..++++++|++|++++|.+.  .+|..+.++++|++|++++|. +..++...+..
T Consensus        97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~  175 (606)
T 3vq2_A           97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQF  175 (606)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHH
T ss_pred             hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhh
Confidence            6778888888888888888776 3 67888888888888888776  467778888888888888876 44444322333


Q ss_pred             CC---------------------------CCcEEEeecCCCccccc--------c----------Cc-------------
Q 047733          189 LS---------------------------QLEELYIGESPIMWGKV--------G----------GV-------------  210 (508)
Q Consensus       189 l~---------------------------~L~~L~l~~~~~~~~~~--------~----------~~-------------  210 (508)
                      +.                           +|+.|++++|.+.+...        +          ..             
T Consensus       176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~  255 (606)
T 3vq2_A          176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM  255 (606)
T ss_dssp             HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred             hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence            32                           44555555543320000        0          00             


Q ss_pred             --------------CCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceee
Q 047733          211 --------------DGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQ  276 (508)
Q Consensus       211 --------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~  276 (508)
                                    ........+..+..+++|+.|+++++....++ .+..+++|+.|.+..+...... .. .+++++.
T Consensus       256 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~  332 (606)
T 3vq2_A          256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKS  332 (606)
T ss_dssp             TTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCE
T ss_pred             hhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc-cC-CCCccce
Confidence                          00000111122445566666666666655555 5556666666666655542222 22 4445555


Q ss_pred             EEeccCccccccchhhhcccceeEEEecCCCCcccccc-CCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCc
Q 047733          277 LTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLY-GSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVL  355 (508)
Q Consensus       277 l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L  355 (508)
                      +.+..+......  ....+++|++|++.++ .++.... ......+++|++|++++|. ++.+..       ....+++|
T Consensus       333 L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-------~~~~l~~L  401 (606)
T 3vq2_A          333 LTLTMNKGSISF--KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA-------NFMGLEEL  401 (606)
T ss_dssp             EEEESCSSCEEC--CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC-------CCTTCTTC
T ss_pred             eeccCCcCccch--hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccchh-------hccCCCCC
Confidence            555544221111  2224555555555544 2222210 0111345555555555532 332210       12234555


Q ss_pred             ceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhcccc--------
Q 047733          356 ESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAER--------  427 (508)
Q Consensus       356 ~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~--------  427 (508)
                      +.|.+.++. +..... ......+++|++|++++|. +...++ .....+++|++|++++|.--..+.....        
T Consensus       402 ~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  477 (606)
T 3vq2_A          402 QHLDFQHST-LKRVTE-FSAFLSLEKLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF  477 (606)
T ss_dssp             CEEECTTSE-EESTTT-TTTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CeeECCCCc-cCCccC-hhhhhccccCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence            555555442 111110 0012234445555555442 222221 1223444444444444321111110000        


Q ss_pred             ---C--CcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCCcccccccccCCceecC-ChHHH
Q 047733          428 ---G--DESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHESTKKVFP-NLEYL  501 (508)
Q Consensus       428 ---~--~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~l~~~~~~~~~~~~~~p-~l~~L  501 (508)
                         .  ......+..+..+++|++|++++| +++++....+. .+++|+.|++++|.-   . .+|.... .+| +|+.|
T Consensus       478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~l~~N~l---~-~~p~~~~-~l~~~L~~l  550 (606)
T 3vq2_A          478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYN-QLYSLSTLDCSFNRI---E-TSKGILQ-HFPKSLAFF  550 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTT-TCTTCCEEECTTSCC---C-CEESCGG-GSCTTCCEE
T ss_pred             EECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHcc-CCCcCCEEECCCCcC---c-ccCHhHh-hhcccCcEE
Confidence               0  000000233445677788888777 55555333222 457788888887753   2 4555432 455 46666


Q ss_pred             h
Q 047733          502 S  502 (508)
Q Consensus       502 ~  502 (508)
                      .
T Consensus       551 ~  551 (606)
T 3vq2_A          551 N  551 (606)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.5e-28  Score=257.06  Aligned_cols=351  Identities=18%  Similarity=0.175  Sum_probs=208.9

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      ...+++++|++++|.+..++.  +..+++|++|++++|.            +..++...|.++++|++|++++|.++.++
T Consensus        25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~   92 (570)
T 2z63_A           25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------------IQTIEDGAYQSLSHLSTLILTGNPIQSLA   92 (570)
T ss_dssp             SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC------------CCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc------------CCccCcccccCchhCCEEeCcCCcCCccC
Confidence            456789999999999987764  4489999999999943            34444444678888999999988887655


Q ss_pred             -hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchh--hHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733          114 -SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEK--LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS  188 (508)
Q Consensus       114 -~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  188 (508)
                       ..|+.+++|++|++++|.++. + ..++++++|++|++++|.+..  +|..+.++++|++|++++|. +..++...++.
T Consensus        93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  171 (570)
T 2z63_A           93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV  171 (570)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHH
T ss_pred             HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccc
Confidence             678888889999988888777 3 458888888999988887774  67788888888888888876 55555433566


Q ss_pred             CCCC----cEEEeecCCCccccccCcCC----------------------------------------------------
Q 047733          189 LSQL----EELYIGESPIMWGKVGGVDG----------------------------------------------------  212 (508)
Q Consensus       189 l~~L----~~L~l~~~~~~~~~~~~~~~----------------------------------------------------  212 (508)
                      +++|    +.|+++.|.+....++....                                                    
T Consensus       172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~  251 (570)
T 2z63_A          172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL  251 (570)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred             hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence            6666    66776666554322110000                                                    


Q ss_pred             -----------------CCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCcccee
Q 047733          213 -----------------EGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIF  275 (508)
Q Consensus       213 -----------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~  275 (508)
                                       ......+..+..+++|+.|+++++....+|..+..+ +|+.+.+..+.......  ..+.+++
T Consensus       252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~  328 (570)
T 2z63_A          252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLK  328 (570)
T ss_dssp             GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCC
T ss_pred             ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccC
Confidence                             000112233455677777777777766677666666 77777776554332211  2344455


Q ss_pred             eEEeccCccccccchhhhcccceeEEEecCCCCcccccc-CCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcC
Q 047733          276 QLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLY-GSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPV  354 (508)
Q Consensus       276 ~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~  354 (508)
                      .+.+..+.......  ...+++|++|++.++. ++.... ......+++|++|++++| .++.+...       ...+++
T Consensus       329 ~L~l~~n~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-------~~~l~~  397 (570)
T 2z63_A          329 RLTFTSNKGGNAFS--EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN-------FLGLEQ  397 (570)
T ss_dssp             EEEEESCBSCCBCC--CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE-------EETCTT
T ss_pred             EEeCcCCccccccc--cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCC-cccccccc-------ccccCC
Confidence            55555433211111  1356667777776553 222210 011234566666666664 23333211       123456


Q ss_pred             cceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733          355 LESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ  417 (508)
Q Consensus       355 L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  417 (508)
                      |+.|++.++. +..... ......+++|++|++++| .+...++ .....+++|++|++++|.
T Consensus       398 L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~  456 (570)
T 2z63_A          398 LEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNS  456 (570)
T ss_dssp             CCEEECTTSE-EESCTT-SCTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCE
T ss_pred             CCEEEccCCc-cccccc-hhhhhcCCCCCEEeCcCC-cccccch-hhhhcCCcCcEEECcCCc
Confidence            6666666543 221110 011234556666666665 2333322 223455666666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=4.4e-28  Score=255.38  Aligned_cols=409  Identities=16%  Similarity=0.167  Sum_probs=240.3

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-  112 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-  112 (508)
                      .+.+++++|++++|.+..+++  +..+++|++|++++|.+            ..++...|.++++|++|++++|.+..+ 
T Consensus        30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   97 (606)
T 3t6q_A           30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI------------YWIHEDTFQSQHRLDTLVLTANPLIFMA   97 (606)
T ss_dssp             TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC------------CEECTTTTTTCTTCCEEECTTCCCSEEC
T ss_pred             CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc------------ceeChhhccCccccCeeeCCCCcccccC
Confidence            466789999999999987753  34999999999999433            333333347788888888888877653 


Q ss_pred             chhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcC
Q 047733          113 PSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSL  189 (508)
Q Consensus       113 ~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  189 (508)
                      |..++.+++|++|++++|.++.  +..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++.+
T Consensus        98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l  176 (606)
T 3t6q_A           98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSL  176 (606)
T ss_dssp             TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTT
T ss_pred             hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhh
Confidence            5677788888888888887776  466777888888888888777542 233447788888888776 566655446777


Q ss_pred             CCCc--EEEeecCCCccccccCcCC----------------------------------------C--------------
Q 047733          190 SQLE--ELYIGESPIMWGKVGGVDG----------------------------------------E--------------  213 (508)
Q Consensus       190 ~~L~--~L~l~~~~~~~~~~~~~~~----------------------------------------~--------------  213 (508)
                      ++|+  .|++++|.+....++....                                        .              
T Consensus       177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L  256 (606)
T 3t6q_A          177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV  256 (606)
T ss_dssp             TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred             cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence            7777  6777776654322211000                                        0              


Q ss_pred             --------Cccc-chhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccC-CCCCCCccceeeEEeccCc
Q 047733          214 --------GRNA-SLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAW-DSPSDDISGIFQLTVASGA  283 (508)
Q Consensus       214 --------~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~-~~~~~~~~~l~~l~L~~~~  283 (508)
                              .... ....++.+++|+.|+++++....+|..+..+++|+.|.+..+..... ......+++|+.+.+..+.
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred             eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence                    0000 11124555666666666666556666666666666666654432221 1223334445555554432


Q ss_pred             cc-cccchhhhcccceeEEEecCCCCcccccc-CCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeecc
Q 047733          284 NI-CLNGGHIMQLKGIKELCLGGSLDMKSVLY-GSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLR  361 (508)
Q Consensus       284 ~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~  361 (508)
                      .. ..+......+++|++|++.++. ++.... ......+++|++|+++++. ++.+..  .    ....+++|+.|++.
T Consensus       337 ~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~----~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          337 KRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKT--E----AFKECPQLELLDLA  408 (606)
T ss_dssp             SCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-CEEECT--T----TTTTCTTCSEEECT
T ss_pred             cccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc-CCcCCH--H----HhcCCccCCeEECC
Confidence            22 2222333455666666665543 222211 1123456666666666642 332210  0    22345677777776


Q ss_pred             CcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeec
Q 047733          362 DLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIEL  441 (508)
Q Consensus       362 ~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~  441 (508)
                      ++. ++.... ......+++|++|++++| .+...++ .....+++|++|++++++--..... .        ...+..+
T Consensus       409 ~n~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~--------~~~~~~l  475 (606)
T 3t6q_A          409 FTR-LKVKDA-QSPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQ-K--------TNSLQTL  475 (606)
T ss_dssp             TCC-EECCTT-CCTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTCBCGGGEEC-S--------SCGGGGC
T ss_pred             CCc-CCCccc-chhhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCCCCCccccc-c--------chhhccC
Confidence            653 222110 111345677777777776 3444333 2345677777777777652221110 0        2345668


Q ss_pred             cccCeeEcCCCccccccccCccccccCCccEEEEeeCCC
Q 047733          442 TQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQ  480 (508)
Q Consensus       442 ~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~  480 (508)
                      ++|++|++++| +++++....+. .+++|+.|++++|.-
T Consensus       476 ~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          476 GRLEILVLSFC-DLSSIDQHAFT-SLKMMNHVDLSHNRL  512 (606)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSSCC
T ss_pred             CCccEEECCCC-ccCccChhhhc-cccCCCEEECCCCcc
Confidence            88999999988 66666544332 568899999988853

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.3e-28  Score=259.83  Aligned_cols=409  Identities=12%  Similarity=0.116  Sum_probs=291.6

Q ss_pred             CcccEEEeecCCCC-CCCCC-CCCCCCcEEEcCCCCC-------C------CC---------------------CcccC-
Q 047733           39 KVCTAISLKNSNIS-ELPQV-FECPQLKYFHIANDPS-------R------RI---------------------PVHIA-   81 (508)
Q Consensus        39 ~~lr~L~l~~~~~~-~l~~~-~~~~~L~~L~l~~~~~-------~------~~---------------------~~~~~-   81 (508)
                      .+|+.|+++++.+. .+|+. ..+++|++|++++|..       +      .+                     +..+. 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            57999999999994 56654 4999999999999843       1      00                     00000 


Q ss_pred             -------------------------------CCCCCCCChhhhhCCCCccEEEecCCcCCC------------------C
Q 047733           82 -------------------------------NDPSRRIPDKFFTGMRELRVLDFARMHLLP------------------L  112 (508)
Q Consensus        82 -------------------------------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------l  112 (508)
                                                     ++....+|..+ +++++|++|++++|.++.                  +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHH-hcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                                           11222377765 899999999999999987                  9


Q ss_pred             chhhc--cCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCC-ch--hhHHHhccC------CCCceEeccCCCCCC
Q 047733          113 PSSLR--LFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSD-ME--KLVEEIGQL------THLRLLDLSNCFNLK  179 (508)
Q Consensus       113 ~~~~~--~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~-i~--~lp~~~~~l------~~L~~L~l~~~~~~~  179 (508)
                      |..++  ++++|++|++++|.+..  |..++++++|++|++++|. ++  .+|..++.+      ++|++|++++|. +.
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~  318 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK  318 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC
Confidence            99999  99999999999999765  7899999999999999997 87  489888876      999999999988 66


Q ss_pred             ccCh--hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCC-ccEEEE
Q 047733          180 VIPP--NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKM-LQRYSI  256 (508)
Q Consensus       180 ~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~-L~~L~i  256 (508)
                      .+|.  . ++.+++|++|++++|.+.+.            ++ .++.+++|+.|+++++....+|..+..+++ |+.|.+
T Consensus       319 ~ip~~~~-l~~l~~L~~L~L~~N~l~g~------------ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~L  384 (636)
T 4eco_A          319 TFPVETS-LQKMKKLGMLECLYNQLEGK------------LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF  384 (636)
T ss_dssp             SCCCHHH-HTTCTTCCEEECCSCCCEEE------------CC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEEC
T ss_pred             ccCchhh-hccCCCCCEEeCcCCcCccc------------hh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEc
Confidence            8887  5 89999999999999987633            22 577788999999999997789988988998 999999


Q ss_pred             EecCcccCCCCCCCc--cceeeEEeccCccccccchhhh-------cccceeEEEecCCCCccccccCCcCCCCCCCcEE
Q 047733          257 LIGDQWAWDSPSDDI--SGIFQLTVASGANICLNGGHIM-------QLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHL  327 (508)
Q Consensus       257 ~~~~~~~~~~~~~~~--~~l~~l~L~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  327 (508)
                      ..+............  .+|+.+.+..+...........       .+++|++|++.++. ++.+... ....+++|++|
T Consensus       385 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~-~~~~l~~L~~L  462 (636)
T 4eco_A          385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKE-LFSTGSPLSSI  462 (636)
T ss_dssp             CSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTH-HHHTTCCCSEE
T ss_pred             cCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHH-HHccCCCCCEE
Confidence            866644333333333  2677777766543322111111       45699999998863 4433221 12458999999


Q ss_pred             EEecCCCceeeeecccCCC-CCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccC
Q 047733          328 EVVENSNLLCVVDTVDRAT-APTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQ  406 (508)
Q Consensus       328 ~l~~~~~l~~i~~~~~~~~-~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~  406 (508)
                      +++++ .++.+........ .....+++|+.|+++++. ++.++.. +....+++|++|+++++ .++.+|.  .+..++
T Consensus       463 ~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~  536 (636)
T 4eco_A          463 NLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDD-FRATTLPYLVGIDLSYN-SFSKFPT--QPLNSS  536 (636)
T ss_dssp             ECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGG-GSTTTCTTCCEEECCSS-CCSSCCC--GGGGCS
T ss_pred             ECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChh-hhhccCCCcCEEECCCC-CCCCcCh--hhhcCC
Confidence            99985 4554422110000 001123399999999864 5554321 11137899999999997 5666654  356799


Q ss_pred             CCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCCcc
Q 047733          407 QLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVK  482 (508)
Q Consensus       407 ~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~l~  482 (508)
                      +|+.|+++++..+..-      ......+..+..+++|++|++++| +++.++...    +++|+.|++++||-..
T Consensus       537 ~L~~L~Ls~N~~ls~N------~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          537 TLKGFGIRNQRDAQGN------RTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI----TPNISVLDIKDNPNIS  601 (636)
T ss_dssp             SCCEEECCSCBCTTCC------BCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC----CTTCCEEECCSCTTCE
T ss_pred             CCCEEECCCCcccccC------cccccChHHHhcCCCCCEEECCCC-cCCccCHhH----hCcCCEEECcCCCCcc
Confidence            9999999765411100      000011456667999999999998 568887652    2899999999998654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=4.1e-27  Score=248.04  Aligned_cols=391  Identities=17%  Similarity=0.182  Sum_probs=268.6

Q ss_pred             CCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-c
Q 047733           37 ALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-P  113 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~  113 (508)
                      .++++++|++++|.+..+.+  +..+++|++|++++|.+            ..++...|.++++|++|++++|.++.+ +
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~~~~~~l~~L~~L~L~~n~i~~l~~  122 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL------------IFMAETALSGPKALKHLFFIQTGISSIDF  122 (606)
T ss_dssp             TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC------------SEECTTTTSSCTTCCEEECTTSCCSCGGG
T ss_pred             cCccceEEECCCCccceeChhhccCccccCeeeCCCCcc------------cccChhhhcccccccEeeccccCcccCCc
Confidence            46789999999999977643  34899999999999433            233323347788888888888888765 4


Q ss_pred             hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhh-HHHhccCCCCc--eEeccCCCCCCccCh-----
Q 047733          114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLR--LLDLSNCFNLKVIPP-----  183 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~--~L~l~~~~~~~~~~~-----  183 (508)
                      ..++++++|++|++++|.++.  +..+..+++|++|++++|.++.+ |..+..+++|+  .|++++|. +..+++     
T Consensus       123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~  201 (606)
T 3t6q_A          123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDS  201 (606)
T ss_dssp             SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC-CCEECTTTTTT
T ss_pred             chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc-cCccChhHhhh
Confidence            667788888888888888765  24555588888888888877755 45566777777  66666655 333222     


Q ss_pred             ----------------------------------------------------------------------hhhhcCCCCc
Q 047733          184 ----------------------------------------------------------------------NVISSLSQLE  193 (508)
Q Consensus       184 ----------------------------------------------------------------------~~l~~l~~L~  193 (508)
                                                                                            ..+..+++|+
T Consensus       202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  281 (606)
T 3t6q_A          202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ  281 (606)
T ss_dssp             CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred             ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence                                                                                  2234445555


Q ss_pred             EEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEEecCcc-cC-CCCCCC
Q 047733          194 ELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGDQW-AW-DSPSDD  270 (508)
Q Consensus       194 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~-~~-~~~~~~  270 (508)
                      +|++++|.++             .++..+..+++|+.|+++++..... +..+..+++|+.|.+..+... .. ......
T Consensus       282 ~L~l~~n~l~-------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          282 ELDLTATHLS-------------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             EEECTTSCCS-------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             EEeccCCccC-------------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence            5555554443             4556788999999999999986655 456788999999999866533 12 223556


Q ss_pred             ccceeeEEeccCcccccc--chhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCC
Q 047733          271 ISGIFQLTVASGANICLN--GGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAP  348 (508)
Q Consensus       271 ~~~l~~l~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~  348 (508)
                      +++|+.+.+..+......  ......+++|++|++.++. +...... ....+++|++|+++++. ++....   ..  .
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~---~~--~  420 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTE-AFKECPQLELLDLAFTR-LKVKDA---QS--P  420 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTT-TTTTCTTCSEEECTTCC-EECCTT---CC--T
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHH-HhcCCccCCeEECCCCc-CCCccc---ch--h
Confidence            777888888765443332  3345578999999998874 3333222 23578999999999864 432211   00  2


Q ss_pred             CCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcce--ecchhhhhccCCCcEEeeccccchhhhhccc
Q 047733          349 TTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKN--VFPLVIGRGLQQLQFIEVTECQNLDVIFAAE  426 (508)
Q Consensus       349 ~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~  426 (508)
                      ...+++|+.|+++++. +....  +.....+++|++|++++|. +..  ++.......+++|++|++++|. +..+.   
T Consensus       421 ~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~---  492 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSL-LDISS--EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSID---  492 (606)
T ss_dssp             TTTCTTCCEEECTTCC-CBTTC--TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEEC---
T ss_pred             hhCcccCCEEECCCCc-cCCcC--HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccC---
Confidence            4468999999999975 33322  2233568999999999984 443  3333456889999999999985 44433   


Q ss_pred             cCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCC
Q 047733          427 RGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQ  480 (508)
Q Consensus       427 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~  480 (508)
                              +..+..+++|++|+++++ +++.+....+. .++.| .|++++|.-
T Consensus       493 --------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~-~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          493 --------QHAFTSLKMMNHVDLSHN-RLTSSSIEALS-HLKGI-YLNLASNHI  535 (606)
T ss_dssp             --------TTTTTTCTTCCEEECCSS-CCCGGGGGGGT-TCCSC-EEECCSSCC
T ss_pred             --------hhhhccccCCCEEECCCC-ccCcCChhHhC-ccccc-EEECcCCcc
Confidence                    334566899999999998 67766554433 56888 999999854

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.1e-27  Score=257.51  Aligned_cols=410  Identities=13%  Similarity=0.091  Sum_probs=292.2

Q ss_pred             CCcccEEEeecCCCC-CCCCC-CCCCCCcEEEc-CCCCC-CCCCcc----------------------------------
Q 047733           38 LKVCTAISLKNSNIS-ELPQV-FECPQLKYFHI-ANDPS-RRIPVH----------------------------------   79 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~-~l~~~-~~~~~L~~L~l-~~~~~-~~~~~~----------------------------------   79 (508)
                      ...|+.|+++++.+. .+|+. ..+++|++|++ ++|.. +..+..                                  
T Consensus       322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s  401 (876)
T 4ecn_A          322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS  401 (876)
T ss_dssp             TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred             CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence            367999999999994 56654 49999999999 66531 111100                                  


Q ss_pred             ----------------------------c--CCCCCCCCChhhhhCCCCccEEEecCCcCCC------------------
Q 047733           80 ----------------------------I--ANDPSRRIPDKFFTGMRELRVLDFARMHLLP------------------  111 (508)
Q Consensus        80 ----------------------------~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------  111 (508)
                                                  +  ..+....+|..+ +++++|++|++++|.++.                  
T Consensus       402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                                        0  001111277765 899999999999999987                  


Q ss_pred             Cchhhc--cCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCC-chh--hHHHhccCC-------CCceEeccCCCC
Q 047733          112 LPSSLR--LFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSD-MEK--LVEEIGQLT-------HLRLLDLSNCFN  177 (508)
Q Consensus       112 l~~~~~--~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~-i~~--lp~~~~~l~-------~L~~L~l~~~~~  177 (508)
                      +|..++  ++++|++|++++|.+..  |..++++++|++|++++|. ++.  +|..++.++       +|++|++++|. 
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-
Confidence            999887  99999999999999665  7889999999999999997 774  888777665       99999999988 


Q ss_pred             CCccCh--hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCC-ccEE
Q 047733          178 LKVIPP--NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKM-LQRY  254 (508)
Q Consensus       178 ~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~-L~~L  254 (508)
                      +..+|.  . ++.+++|+.|++++|.+.             .++ .++.+++|+.|++++|....+|..+..+++ |+.|
T Consensus       560 L~~ip~~~~-l~~L~~L~~L~Ls~N~l~-------------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          560 LEEFPASAS-LQKMVKLGLLDCVHNKVR-------------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             CCBCCCHHH-HTTCTTCCEEECTTSCCC-------------BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred             CCccCChhh-hhcCCCCCEEECCCCCcc-------------cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence            668887  5 899999999999999876             233 688999999999999998889988988998 9999


Q ss_pred             EEEecCcccCCCCCCCcc--ceeeEEeccCccccccchh---hh--cccceeEEEecCCCCccccccCCcCCCCCCCcEE
Q 047733          255 SILIGDQWAWDSPSDDIS--GIFQLTVASGANICLNGGH---IM--QLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHL  327 (508)
Q Consensus       255 ~i~~~~~~~~~~~~~~~~--~l~~l~L~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L  327 (508)
                      .+..+.............  +|+.+.+..+........+   ..  ..++|+.|++.++. ++.++... ...+++|+.|
T Consensus       625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~-~~~l~~L~~L  702 (876)
T 4ecn_A          625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTEL-FATGSPISTI  702 (876)
T ss_dssp             ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHH-HHTTCCCSEE
T ss_pred             ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHH-HccCCCCCEE
Confidence            998766443333333332  3777777665432211111   11  24589999998874 44432211 2368999999


Q ss_pred             EEecCCCceeeeecccCCC-CCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccC
Q 047733          328 EVVENSNLLCVVDTVDRAT-APTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQ  406 (508)
Q Consensus       328 ~l~~~~~l~~i~~~~~~~~-~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~  406 (508)
                      +++++ .++.++....... .....+++|+.|+++++ .++.++.. +....+++|+.|+++++ .+..+|.  .+..++
T Consensus       703 ~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~-l~~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~  776 (876)
T 4ecn_A          703 ILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD-FRATTLPYLSNMDVSYN-CFSSFPT--QPLNSS  776 (876)
T ss_dssp             ECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG-GSTTTCTTCCEEECCSS-CCSSCCC--GGGGCT
T ss_pred             ECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHH-hhhccCCCcCEEEeCCC-CCCccch--hhhcCC
Confidence            99985 5554432111100 00123459999999997 45555321 11137899999999997 5666654  346899


Q ss_pred             CCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCCccc
Q 047733          407 QLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKF  483 (508)
Q Consensus       407 ~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~l~~  483 (508)
                      +|+.|++++++.+..-      ......+..+..+++|++|++++| ++..++...    +++|+.|++++||-..+
T Consensus       777 ~L~~L~Ls~N~~ls~N------~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l----~~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          777 QLKAFGIRHQRDAEGN------RILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL----TPQLYILDIADNPNISI  842 (876)
T ss_dssp             TCCEEECCCCBCTTCC------BCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC----CSSSCEEECCSCTTCEE
T ss_pred             CCCEEECCCCCCcccc------cccccChHHHhcCCCCCEEECCCC-CCCccCHhh----cCCCCEEECCCCCCCcc
Confidence            9999999875511100      000111456677999999999998 558787652    27999999999986543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=8.4e-27  Score=245.63  Aligned_cols=151  Identities=19%  Similarity=0.245  Sum_probs=126.9

Q ss_pred             ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccC
Q 047733           41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLF  119 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l  119 (508)
                      -+.++.+++.+..+|... .+++++|++++|            ....++...|.++++|++|++++|.++.+ |..|.++
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l   79 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFN------------PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL   79 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS-CTTCCEEECTTS------------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CCceEccCCCcccCCCCC-CCCcCEEECCCC------------CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhch
Confidence            357888888888888744 389999999993            34445544468999999999999999876 5679999


Q ss_pred             ccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCC-ccChhhhhcCCCCcEE
Q 047733          120 QNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLK-VIPPNVISSLSQLEEL  195 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L  195 (508)
                      ++|++|++++|.++.  |..++++++|++|++++|.+..++ ..++++++|++|++++|.... .+|.. ++.+++|++|
T Consensus        80 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L  158 (606)
T 3vq2_A           80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHV  158 (606)
T ss_dssp             TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEE
T ss_pred             hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEE
Confidence            999999999999887  688999999999999999998776 568999999999999988333 45665 8999999999


Q ss_pred             EeecCCCccc
Q 047733          196 YIGESPIMWG  205 (508)
Q Consensus       196 ~l~~~~~~~~  205 (508)
                      ++++|.++..
T Consensus       159 ~Ls~n~l~~~  168 (606)
T 3vq2_A          159 DLSYNYIQTI  168 (606)
T ss_dssp             ECCSSCCCEE
T ss_pred             EccCCcceec
Confidence            9999987643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=3.7e-26  Score=244.00  Aligned_cols=155  Identities=20%  Similarity=0.263  Sum_probs=107.2

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      +..+++++|++++|.+..++.  +..+++|++|++.+|.+            ..++...|.++++|++|++++|.++.+|
T Consensus        22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~~~~~~l~~L~~L~L~~n~l~~l~   89 (680)
T 1ziw_A           22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI------------SKLEPELCQKLPMLKVLNLQHNELSQLS   89 (680)
T ss_dssp             CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC------------CCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred             ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc------------CccCHHHHhcccCcCEEECCCCccCccC
Confidence            456889999999999988876  34899999999998433            3333334467777777777777777666


Q ss_pred             h-hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCccChhhhh--
Q 047733          114 S-SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVIS--  187 (508)
Q Consensus       114 ~-~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--  187 (508)
                      . .|+++++|++|++++|.++. + ..++++++|++|++++|.+... |..+.++++|++|++++|. +..++...+.  
T Consensus        90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~  168 (680)
T 1ziw_A           90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIF  168 (680)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGG
T ss_pred             hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcc
Confidence            4 47777777777777777665 3 5677777777777777766643 3445667777777777765 5555543232  


Q ss_pred             cCCCCcEEEeecCCCc
Q 047733          188 SLSQLEELYIGESPIM  203 (508)
Q Consensus       188 ~l~~L~~L~l~~~~~~  203 (508)
                      .+++|++|++++|.+.
T Consensus       169 ~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          169 ANSSLKKLELSSNQIK  184 (680)
T ss_dssp             TTCEESEEECTTCCCC
T ss_pred             ccccccEEECCCCccc
Confidence            4467777777776654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.8e-26  Score=239.85  Aligned_cols=385  Identities=18%  Similarity=0.198  Sum_probs=266.2

Q ss_pred             CCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch
Q 047733           37 ALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS  114 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  114 (508)
                      .++++++|++++|.+.+++.  +..+++|++|++.+|.            ...++...|.++++|++|++++|.++.++.
T Consensus        50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  117 (570)
T 2z63_A           50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP------------IQSLALGAFSGLSSLQKLVAVETNLASLEN  117 (570)
T ss_dssp             TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------------CCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred             CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc------------CCccCHhhhcCccccccccccccccccCCC
Confidence            46789999999999987764  3489999999999943            334444445788888888888888877664


Q ss_pred             -hhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhhH-HHhccCCCC----ceEeccCCCCCCccChhh
Q 047733          115 -SLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHL----RLLDLSNCFNLKVIPPNV  185 (508)
Q Consensus       115 -~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L----~~L~l~~~~~~~~~~~~~  185 (508)
                       .++++++|++|++++|.++.   |..++++++|++|++++|.++.++ ..+..+++|    +.+++++|. +..+++..
T Consensus       118 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~  196 (570)
T 2z63_A          118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA  196 (570)
T ss_dssp             CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTT
T ss_pred             ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC-ceecCHHH
Confidence             57888888888888888664   577888888888888888776443 345555555    666666655 33333321


Q ss_pred             --------------------------------------------------------------------------------
Q 047733          186 --------------------------------------------------------------------------------  185 (508)
Q Consensus       186 --------------------------------------------------------------------------------  185 (508)
                                                                                                      
T Consensus       197 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~  276 (570)
T 2z63_A          197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID  276 (570)
T ss_dssp             TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred             hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence                                                                                            


Q ss_pred             -hhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccC
Q 047733          186 -ISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAW  264 (508)
Q Consensus       186 -l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~  264 (508)
                       +..+++|+.|++.++.+.             .++..+..+ +|+.|+++++....+|..  .+++|+.+.+..+.....
T Consensus       277 ~~~~l~~L~~L~l~~~~l~-------------~l~~~~~~~-~L~~L~l~~n~~~~l~~~--~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          277 LFNCLTNVSSFSLVSVTIE-------------RVKDFSYNF-GWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             TTGGGTTCSEEEEESCEEC-------------SCCBCCSCC-CCSEEEEESCBCSSCCBC--BCSSCCEEEEESCBSCCB
T ss_pred             hhcCcCcccEEEecCccch-------------hhhhhhccC-CccEEeeccCcccccCcc--cccccCEEeCcCCccccc
Confidence             223344444444444332             344556677 999999999997777764  789999999987654333


Q ss_pred             CCCCCCccceeeEEeccCcccccc--chhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecc
Q 047733          265 DSPSDDISGIFQLTVASGANICLN--GGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTV  342 (508)
Q Consensus       265 ~~~~~~~~~l~~l~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~  342 (508)
                      ... ..+++|+.+.+..+......  ......+++|++|++.++. +......  ...+++|++|++.++. ++.+.   
T Consensus       341 ~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~---  412 (570)
T 2z63_A          341 FSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSN-LKQMS---  412 (570)
T ss_dssp             CCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSE-EESCT---
T ss_pred             ccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCCc-ccccc---
Confidence            222 55667877777765433222  2344578999999998874 4444332  3578999999999853 33221   


Q ss_pred             cCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCc-ceecchhhhhccCCCcEEeeccccchhh
Q 047733          343 DRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKL-KNVFPLVIGRGLQQLQFIEVTECQNLDV  421 (508)
Q Consensus       343 ~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~l~~L~~L~i~~c~~L~~  421 (508)
                      ...  ....+++|+.|++++|.-....   +.....+++|++|++++|.-- ..+|  .....+++|++|++++|. +..
T Consensus       413 ~~~--~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~  484 (570)
T 2z63_A          413 EFS--VFLSLRNLIYLDISHTHTRVAF---NGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQ-LEQ  484 (570)
T ss_dssp             TSC--TTTTCTTCCEEECTTSCCEECC---TTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCE
T ss_pred             chh--hhhcCCCCCEEeCcCCcccccc---hhhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCc-ccc
Confidence            111  3456899999999998533222   223456899999999998532 2344  345789999999999985 444


Q ss_pred             hhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCC
Q 047733          422 IFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECP  479 (508)
Q Consensus       422 i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~  479 (508)
                      +.           +..+..+++|++|++++| ++++++...+. .+++|+.|+++++|
T Consensus       485 ~~-----------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~N~  529 (570)
T 2z63_A          485 LS-----------PTAFNSLSSLQVLNMASN-QLKSVPDGIFD-RLTSLQKIWLHTNP  529 (570)
T ss_dssp             EC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred             CC-----------hhhhhcccCCCEEeCCCC-cCCCCCHHHhh-cccCCcEEEecCCc
Confidence            32           334556899999999998 78887654433 67999999999754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=8.1e-27  Score=251.71  Aligned_cols=353  Identities=17%  Similarity=0.145  Sum_probs=184.8

Q ss_pred             cCCCcccEEEeecCCCC-CCCC---CCCCCCCcEEEcCCCCCC-CCCcc------------cCCCCCCCCChhh---hhC
Q 047733           36 DALKVCTAISLKNSNIS-ELPQ---VFECPQLKYFHIANDPSR-RIPVH------------IANDPSRRIPDKF---FTG   95 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~-~l~~---~~~~~~L~~L~l~~~~~~-~~~~~------------~~~~~~~~~~~~~---~~~   95 (508)
                      ..++++++|++++|.+. .++.   +..+++|++|++++|... ..|..            +..+.....+...   +.+
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A           97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            34678999999998884 3444   348889999999886432 11211            1111222222211   356


Q ss_pred             CCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEecc
Q 047733           96 MRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLS  173 (508)
Q Consensus        96 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~  173 (508)
                      +++|++|++++|.+..... +..+++|++|++++|.++. +..++++++|++|++++|.+. .+|..+..+++|++|+++
T Consensus       177 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             CTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             CCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence            6667777777766653222 2567777777777777665 444777777777777777666 566677777777777777


Q ss_pred             CCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccC-CCCccEEEEecccC-ccCCCCCccCCCc
Q 047733          174 NCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-LSKLTSLEILIEDE-KTLPRDLSFFKML  251 (508)
Q Consensus       174 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~-~~~~~~l~~~~~L  251 (508)
                      +|.....+|.   ..+++|++|++++|.+++..            +..+.. +++|+.|+++++.. +..|..+..+++|
T Consensus       256 ~n~l~~~~~~---~~l~~L~~L~L~~n~l~~~i------------p~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  320 (768)
T 3rgz_A          256 SNQFVGPIPP---LPLKSLQYLSLAENKFTGEI------------PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL  320 (768)
T ss_dssp             SSCCEESCCC---CCCTTCCEEECCSSEEEESC------------CCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred             CCcccCccCc---cccCCCCEEECcCCccCCcc------------CHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence            7763333333   26677777777776654322            233333 36677777776663 3555566667777


Q ss_pred             cEEEEEecCcc-cCCCC-CCCccceeeEEeccCccccccchhhhccc-ceeEEEecCCCCccccccCCcCCCCCCCcEEE
Q 047733          252 QRYSILIGDQW-AWDSP-SDDISGIFQLTVASGANICLNGGHIMQLK-GIKELCLGGSLDMKSVLYGSHGEGFPQLKHLE  328 (508)
Q Consensus       252 ~~L~i~~~~~~-~~~~~-~~~~~~l~~l~L~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  328 (508)
                      +.|.+..+... ..... +..+++|+.+.+..+............++ +|+.|++.++.-............+++|++|+
T Consensus       321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~  400 (768)
T 3rgz_A          321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY  400 (768)
T ss_dssp             CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred             cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence            77766644322 11111 33444555555554433211111122233 66666665543222222211112255666666


Q ss_pred             EecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCC
Q 047733          329 VVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQL  408 (508)
Q Consensus       329 l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L  408 (508)
                      +.+|. ++....  .    ....+++|+.|+++++.--...   +.....+++|++|++++|.--..+|  .....+++|
T Consensus       401 L~~n~-l~~~~p--~----~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L  468 (768)
T 3rgz_A          401 LQNNG-FTGKIP--P----TLSNCSELVSLHLSFNYLSGTI---PSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTL  468 (768)
T ss_dssp             CCSSE-EEEECC--G----GGGGCTTCCEEECCSSEEESCC---CGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTC
T ss_pred             CCCCc-cccccC--H----HHhcCCCCCEEECcCCcccCcc---cHHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCc
Confidence            66642 221100  0    1234556666666654311111   1122345555555555553221222  123445555


Q ss_pred             cEEeeccc
Q 047733          409 QFIEVTEC  416 (508)
Q Consensus       409 ~~L~i~~c  416 (508)
                      ++|+++++
T Consensus       469 ~~L~L~~N  476 (768)
T 3rgz_A          469 ETLILDFN  476 (768)
T ss_dssp             CEEECCSS
T ss_pred             eEEEecCC
Confidence            55555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=3.7e-26  Score=232.65  Aligned_cols=343  Identities=18%  Similarity=0.247  Sum_probs=252.3

Q ss_pred             CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733           38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR  117 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  117 (508)
                      ++++++|++.++.+..++.+..+++|++|++++|            ....++.  +.++++|++|++++|.+..++. +.
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n------------~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~  109 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN------------QLTDITP--LKNLTKLVDILMNNNQIADITP-LA  109 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS------------CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred             hccccEEecCCCCCccCcchhhhcCCCEEECCCC------------ccCCchh--hhccccCCEEECCCCccccChh-hc
Confidence            5789999999999998988779999999999993            3334444  5899999999999999998877 89


Q ss_pred             cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      ++++|++|++++|.+++...+.++++|++|++++|.+..++ .+..+++|++|++.. . ...++.  +..+++|++|++
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l  184 (466)
T 1o6v_A          110 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDI  184 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh--hccCCCCCEEEC
Confidence            99999999999999888444899999999999999888776 488999999999974 3 444544  789999999999


Q ss_pred             ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeE
Q 047733          198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQL  277 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l  277 (508)
                      ++|.+.              .+..+..+++|+.|+++++.....+. +..+++|+.|.+..+....              
T Consensus       185 ~~n~l~--------------~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--------------  235 (466)
T 1o6v_A          185 SSNKVS--------------DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--------------  235 (466)
T ss_dssp             CSSCCC--------------CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--------------
T ss_pred             cCCcCC--------------CChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc--------------
Confidence            998865              22457888999999999988655544 5678889988886543111              


Q ss_pred             EeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcce
Q 047733          278 TVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLES  357 (508)
Q Consensus       278 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~  357 (508)
                                 .+....+++|+.|++.++. ++....   ...+++|++|+++++ .++.+.        ....+++|+.
T Consensus       236 -----------~~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~~  291 (466)
T 1o6v_A          236 -----------IGTLASLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGAN-QISNIS--------PLAGLTALTN  291 (466)
T ss_dssp             -----------CGGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSS-CCCCCG--------GGTTCTTCSE
T ss_pred             -----------chhhhcCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCC-ccCccc--------cccCCCccCe
Confidence                       0122356788888887763 333322   356788888888875 343321        2345778888


Q ss_pred             eeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCc
Q 047733          358 LFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQ  437 (508)
Q Consensus       358 L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~  437 (508)
                      |++.++. ++.+.    +...+++|++|++++| .+..+++   ...+++|+.|++++|+ +..+.             .
T Consensus       292 L~L~~n~-l~~~~----~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~-------------~  348 (466)
T 1o6v_A          292 LELNENQ-LEDIS----PISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS-------------S  348 (466)
T ss_dssp             EECCSSC-CSCCG----GGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG-------------G
T ss_pred             EEcCCCc-ccCch----hhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch-------------h
Confidence            8888764 44332    2467788888888887 5665544   3678888888888774 43331             2


Q ss_pred             eeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCC
Q 047733          438 VIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQ  480 (508)
Q Consensus       438 ~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~  480 (508)
                      +..+++|+.|++++| +++++..   ...+++|+.|++++|+-
T Consensus       349 l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          349 LANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEEE
T ss_pred             hccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCcc
Confidence            345788888888887 4555543   23568888888887753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1.9e-26  Score=239.94  Aligned_cols=153  Identities=17%  Similarity=0.232  Sum_probs=98.0

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      ...+++++|++++|.+.++++  +..+++|++|++++|.+..            ++...|.++++|++|++++|.++.++
T Consensus        23 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------------~~~~~~~~l~~L~~L~Ls~n~l~~~~   90 (549)
T 2z81_A           23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT------------IEGDAFYSLGSLEHLDLSDNHLSSLS   90 (549)
T ss_dssp             CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE------------ECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred             cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc------------cChhhccccccCCEEECCCCccCccC
Confidence            455789999999999977643  3489999999999954433            33333466677777777777766555


Q ss_pred             h-hhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCC-chhhH-HHhccCCCCceEeccCCCCCCccChhhhh
Q 047733          114 S-SLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSD-MEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVIS  187 (508)
Q Consensus       114 ~-~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~-i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  187 (508)
                      . .++++++|++|++++|.++.   +..++++++|++|++++|. +..+| ..+..+++|++|++++|......+.. ++
T Consensus        91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~  169 (549)
T 2z81_A           91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LK  169 (549)
T ss_dssp             HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TT
T ss_pred             HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hh
Confidence            3 36667777777777776553   3556667777777776665 44554 34566667777777666522223333 45


Q ss_pred             cCCCCcEEEeecCC
Q 047733          188 SLSQLEELYIGESP  201 (508)
Q Consensus       188 ~l~~L~~L~l~~~~  201 (508)
                      .+++|++|+++.+.
T Consensus       170 ~l~~L~~L~l~~n~  183 (549)
T 2z81_A          170 SIRDIHHLTLHLSE  183 (549)
T ss_dssp             TCSEEEEEEEECSB
T ss_pred             ccccCceEecccCc
Confidence            55555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=7.7e-27  Score=251.88  Aligned_cols=405  Identities=17%  Similarity=0.148  Sum_probs=215.0

Q ss_pred             CCCcccEEEeecCCCCC-CCC-CCCCCCCcEEEcCCCCCCC-CCcc---------cCCCCC-CCCChhhhhCCCCccEEE
Q 047733           37 ALKVCTAISLKNSNISE-LPQ-VFECPQLKYFHIANDPSRR-IPVH---------IANDPS-RRIPDKFFTGMRELRVLD  103 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~-l~~-~~~~~~L~~L~l~~~~~~~-~~~~---------~~~~~~-~~~~~~~~~~l~~L~~L~  103 (508)
                      .++++++|++++|.+.+ ++. +..+++|++|++.+|.... +|..         +..+.. +.+|..++..+++|++|+
T Consensus       221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~  300 (768)
T 3rgz_A          221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD  300 (768)
T ss_dssp             TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred             cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence            46789999999999864 343 3488999999999864321 1210         000111 123333322234455555


Q ss_pred             ecCCcCC-CCchhhccCccccEEeccCCCCCC--cc-ccCCCCCCcEEEccCCCch-hhHHHhccCC-CCceEeccCCCC
Q 047733          104 FARMHLL-PLPSSLRLFQNLQTLSLDYCELGD--IA-IVGDLKTLVILTLRGSDME-KLVEEIGQLT-HLRLLDLSNCFN  177 (508)
Q Consensus       104 l~~~~~~-~l~~~~~~l~~L~~L~l~~~~l~~--~~-~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~~  177 (508)
                      +++|.+. .+|..++++++|++|++++|.++.  |. .++++++|++|++++|.+. .+|..+..+. +|++|++++|..
T Consensus       301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l  380 (768)
T 3rgz_A          301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF  380 (768)
T ss_dssp             CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred             CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence            5555443 344444455555555555544432  22 2444555555555554443 3444444443 444444444432


Q ss_pred             CCccChhhhhc--CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC-ccCCCCCccCCCccEE
Q 047733          178 LKVIPPNVISS--LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE-KTLPRDLSFFKMLQRY  254 (508)
Q Consensus       178 ~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L  254 (508)
                      ...++.. +..  +++|++|++++|.++.            ..+..++.+++|+.|++++|.. +..|..+..+++|+.|
T Consensus       381 ~~~~~~~-~~~~~~~~L~~L~L~~n~l~~------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          381 SGPILPN-LCQNPKNTLQELYLQNNGFTG------------KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL  447 (768)
T ss_dssp             EEECCTT-TTCSTTCCCCEEECCSSEEEE------------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCcChh-hhhcccCCccEEECCCCcccc------------ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence            2222222 222  3444444444444331            2335567777777777777763 3556666777777777


Q ss_pred             EEEecCcc-cCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCC
Q 047733          255 SILIGDQW-AWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENS  333 (508)
Q Consensus       255 ~i~~~~~~-~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  333 (508)
                      .+..+... ........+++|+.+.+..+............+++|+.|++.++.-...++..  ...+++|++|++++|.
T Consensus       448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~  525 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNS  525 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSC
T ss_pred             ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH--HhcCCCCCEEECCCCc
Confidence            77655432 12223334555666666655433333333456777777777766432222221  2457777777777754


Q ss_pred             CceeeeecccCCCCCCCcCcCcceeeccCcccccccccC-----------------------------------------
Q 047733          334 NLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRG-----------------------------------------  372 (508)
Q Consensus       334 ~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~-----------------------------------------  372 (508)
                      -...++.       ....+++|+.|++++++-...++..                                         
T Consensus       526 l~~~~p~-------~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (768)
T 3rgz_A          526 FSGNIPA-------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG  598 (768)
T ss_dssp             CEEECCG-------GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred             ccCcCCH-------HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence            2222221       2335677777777765422121100                                         


Q ss_pred             --------------------------cccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccc
Q 047733          373 --------------------------PLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAE  426 (508)
Q Consensus       373 --------------------------~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~  426 (508)
                                                +.....+++|+.|+++++ .+....+ ..+..+++|+.|+++++.--..+    
T Consensus       599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~i----  672 (768)
T 3rgz_A          599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIP-KEIGSMPYLFILNLGHNDISGSI----  672 (768)
T ss_dssp             CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCC-GGGGGCTTCCEEECCSSCCCSCC----
T ss_pred             ccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCC-HHHhccccCCEEeCcCCccCCCC----
Confidence                                      001223467778888876 4443222 23567888888888876432222    


Q ss_pred             cCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCC
Q 047733          427 RGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECP  479 (508)
Q Consensus       427 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~  479 (508)
                              +..+..+++|+.|+++++ +++......+. .+++|+.|++++++
T Consensus       673 --------p~~l~~L~~L~~LdLs~N-~l~g~ip~~l~-~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          673 --------PDEVGDLRGLNILDLSSN-KLDGRIPQAMS-ALTMLTEIDLSNNN  715 (768)
T ss_dssp             --------CGGGGGCTTCCEEECCSS-CCEECCCGGGG-GCCCCSEEECCSSE
T ss_pred             --------ChHHhCCCCCCEEECCCC-cccCcCChHHh-CCCCCCEEECcCCc
Confidence                    445666788888888887 45533222222 45788888888774

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=3.3e-25  Score=236.63  Aligned_cols=140  Identities=21%  Similarity=0.273  Sum_probs=105.0

Q ss_pred             CCCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-
Q 047733           37 ALKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-  113 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-  113 (508)
                      ..+++++|++++|.+.++++.  ..+++|++|++++|            ....+|...|.++++|++|++++|.++.++ 
T Consensus        47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n------------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~  114 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN------------ELSQLSDKTFAFCTNLTELHLMSNSIQKIKN  114 (680)
T ss_dssp             GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS------------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred             CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC------------ccCccChhhhccCCCCCEEECCCCccCccCh
Confidence            357899999999999777543  28999999999984            344555554578889999999999888766 


Q ss_pred             hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH-Hh--ccCCCCceEeccCCCCCCccChhhhhc
Q 047733          114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE-EI--GQLTHLRLLDLSNCFNLKVIPPNVISS  188 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~~--~~l~~L~~L~l~~~~~~~~~~~~~l~~  188 (508)
                      ..++++++|++|++++|.++.  +..++++++|++|++++|.++.++. .+  ..+++|++|++++|. +..+++..+..
T Consensus       115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~  193 (680)
T 1ziw_A          115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHA  193 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGG
T ss_pred             hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhh
Confidence            568888899999999888776  4678888899999998888775543 33  356788888888876 44444332343


Q ss_pred             C
Q 047733          189 L  189 (508)
Q Consensus       189 l  189 (508)
                      +
T Consensus       194 l  194 (680)
T 1ziw_A          194 I  194 (680)
T ss_dssp             S
T ss_pred             h
Confidence            3

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=3.8e-26  Score=245.59  Aligned_cols=387  Identities=14%  Similarity=0.154  Sum_probs=270.6

Q ss_pred             CCCCC-CCCCCcEEEcCCCCCCC--CCcccC----CCCCCCCChhh-hhCCCCccEEEecCCcCC-CCchhhccCccccE
Q 047733           54 LPQVF-ECPQLKYFHIANDPSRR--IPVHIA----NDPSRRIPDKF-FTGMRELRVLDFARMHLL-PLPSSLRLFQNLQT  124 (508)
Q Consensus        54 l~~~~-~~~~L~~L~l~~~~~~~--~~~~~~----~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~  124 (508)
                      +|... .+++|++|++++|.+..  ++....    +.....+|..+ |.++++|++|++++|.+. .+|..++++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            44433 88999999999965433  111000    00000266665 348999999999999875 78999999999999


Q ss_pred             EeccCCC-CCC---ccccCCC-------CCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733          125 LSLDYCE-LGD---IAIVGDL-------KTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ  191 (508)
Q Consensus       125 L~l~~~~-l~~---~~~i~~l-------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  191 (508)
                      |++++|+ ++.   |..++++       ++|++|++++|.+..+|.  .+.++++|++|++++|. +..+| . ++.+++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCc
Confidence            9999998 874   4555544       499999999999999998  89999999999999988 66888 3 899999


Q ss_pred             CcEEEeecCCCccccccCcCCCCcccchhhccCCCC-ccEEEEecccCccCCCCCccCC--CccEEEEEecCcccCCC--
Q 047733          192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSK-LTSLEILIEDEKTLPRDLSFFK--MLQRYSILIGDQWAWDS--  266 (508)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~l~~~~--~L~~L~i~~~~~~~~~~--  266 (508)
                      |+.|++++|.+.             .++..+..+++ |+.|++++|....+|..+....  +|+.|.++.+......+  
T Consensus       597 L~~L~Ls~N~l~-------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l  663 (876)
T 4ecn_A          597 LTDLKLDYNQIE-------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI  663 (876)
T ss_dssp             ESEEECCSSCCS-------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred             ceEEECcCCccc-------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence            999999999876             24466888888 9999999999888888775554  49999998665422111  


Q ss_pred             --CCC--CccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcC------CCCCCCcEEEEecCCCce
Q 047733          267 --PSD--DISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHG------EGFPQLKHLEVVENSNLL  336 (508)
Q Consensus       267 --~~~--~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~l~  336 (508)
                        ...  ...+|+.+.+..+.....+......+++|+.|++.++ .++.++.....      .++++|++|++++| .++
T Consensus       664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~  741 (876)
T 4ecn_A          664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT  741 (876)
T ss_dssp             SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC
T ss_pred             hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCc
Confidence              111  2236877888776655555555567899999999886 44444332211      12349999999996 566


Q ss_pred             eeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCC-----CcceecchhhhhccCCCcEE
Q 047733          337 CVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCD-----KLKNVFPLVIGRGLQQLQFI  411 (508)
Q Consensus       337 ~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~-----~l~~l~~~~~~~~l~~L~~L  411 (508)
                      .++...     ....+++|+.|+++++. ++.+   +.....+++|+.|++++++     .+....+ ..+..+++|+.|
T Consensus       742 ~lp~~l-----~~~~l~~L~~L~Ls~N~-L~~l---p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L  811 (876)
T 4ecn_A          742 SLSDDF-----RATTLPYLSNMDVSYNC-FSSF---PTQPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQL  811 (876)
T ss_dssp             CCCGGG-----STTTCTTCCEEECCSSC-CSSC---CCGGGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEE
T ss_pred             cchHHh-----hhccCCCcCEEEeCCCC-CCcc---chhhhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEE
Confidence            543211     11368999999999964 5544   3345688999999998743     3332223 345789999999


Q ss_pred             eeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccc-c------ccCCccEEEEeeCCCcccc
Q 047733          412 EVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLH-F------EFPSLEKLRILECPQVKFK  484 (508)
Q Consensus       412 ~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~-~------~~p~L~~L~i~~C~~l~~~  484 (508)
                      ++++|.- ..+.            ..  .+++|+.|++++|+ +..+...... .      ....-...+|.+||.+.+.
T Consensus       812 ~Ls~N~L-~~Ip------------~~--l~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~l~  875 (876)
T 4ecn_A          812 QIGSNDI-RKVD------------EK--LTPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE  875 (876)
T ss_dssp             ECCSSCC-CBCC------------SC--CCSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGCCC
T ss_pred             ECCCCCC-CccC------------Hh--hcCCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCcccC
Confidence            9999864 5553            22  24799999999995 4444332211 0      1112233467899987543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1.5e-26  Score=244.17  Aligned_cols=385  Identities=11%  Similarity=0.111  Sum_probs=271.1

Q ss_pred             CCCCC-CCCCCcEEEcCCCCCCCC--Ccc-cCC---CCCCCCChhhhh--CCCCccEEEecCCcCC-CCchhhccCcccc
Q 047733           54 LPQVF-ECPQLKYFHIANDPSRRI--PVH-IAN---DPSRRIPDKFFT--GMRELRVLDFARMHLL-PLPSSLRLFQNLQ  123 (508)
Q Consensus        54 l~~~~-~~~~L~~L~l~~~~~~~~--~~~-~~~---~~~~~~~~~~~~--~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~  123 (508)
                      +|... .+++|++|++++|.....  +.. .+.   .....+|..+ +  ++++|++|++++|.+. .+|..++++++|+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            44433 899999999999543320  000 000   0000166665 5  8999999999999876 6899999999999


Q ss_pred             EEeccCCC-CCC---ccccCCC------CCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733          124 TLSLDYCE-LGD---IAIVGDL------KTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ  191 (508)
Q Consensus       124 ~L~l~~~~-l~~---~~~i~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  191 (508)
                      +|++++|+ ++.   |..++++      ++|++|++++|.++.+|.  .+.++++|++|++++|...+.+| . ++.+++
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~  354 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIK  354 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCC
Confidence            99999998 874   5677766      999999999999999998  89999999999999988333888 4 789999


Q ss_pred             CcEEEeecCCCccccccCcCCCCcccchhhccCCCC-ccEEEEecccCccCCCCCccC--CCccEEEEEecCcccC-CCC
Q 047733          192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSK-LTSLEILIEDEKTLPRDLSFF--KMLQRYSILIGDQWAW-DSP  267 (508)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~l~~~--~~L~~L~i~~~~~~~~-~~~  267 (508)
                      |++|++++|.+.             .++..+..+++ |+.|+++++....+|..+...  ++|+.|.+..+..... ...
T Consensus       355 L~~L~L~~N~l~-------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  421 (636)
T 4eco_A          355 LASLNLAYNQIT-------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN  421 (636)
T ss_dssp             ESEEECCSSEEE-------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred             CCEEECCCCccc-------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence            999999998876             24466888888 999999999987888877554  4899999886553321 112


Q ss_pred             CC-------CccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcC------CCCCCCcEEEEecCCC
Q 047733          268 SD-------DISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHG------EGFPQLKHLEVVENSN  334 (508)
Q Consensus       268 ~~-------~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~  334 (508)
                      +.       ...+++.+.+..+.....+......+++|++|++.++. ++.+......      ..+++|++|+++++ .
T Consensus       422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~  499 (636)
T 4eco_A          422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-K  499 (636)
T ss_dssp             SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-C
T ss_pred             hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-c
Confidence            22       34568778887765555555556668999999998874 4444332211      12239999999985 5


Q ss_pred             ceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCC-----C-cceecchhhhhccCCC
Q 047733          335 LLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCD-----K-LKNVFPLVIGRGLQQL  408 (508)
Q Consensus       335 l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~-----~-l~~l~~~~~~~~l~~L  408 (508)
                      ++.++...     ....+++|+.|+++++. ++.++   .....+++|++|+++++.     . ...+|  ..+..+++|
T Consensus       500 l~~lp~~~-----~~~~l~~L~~L~Ls~N~-l~~ip---~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p--~~l~~l~~L  568 (636)
T 4eco_A          500 LTKLSDDF-----RATTLPYLVGIDLSYNS-FSKFP---TQPLNSSTLKGFGIRNQRDAQGNRTLREWP--EGITLCPSL  568 (636)
T ss_dssp             CCBCCGGG-----STTTCTTCCEEECCSSC-CSSCC---CGGGGCSSCCEEECCSCBCTTCCBCCCCCC--TTGGGCSSC
T ss_pred             CCccChhh-----hhccCCCcCEEECCCCC-CCCcC---hhhhcCCCCCEEECCCCcccccCcccccCh--HHHhcCCCC
Confidence            65543211     11368999999999964 54443   344678999999997543     2 23333  245779999


Q ss_pred             cEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCcc-c------cccCCccEEEEeeCCCc
Q 047733          409 QFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDL-H------FEFPSLEKLRILECPQV  481 (508)
Q Consensus       409 ~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~-~------~~~p~L~~L~i~~C~~l  481 (508)
                      ++|+++++.- ..+.            ..  .+++|++|++++++ ++.+..... .      ......+..+|++||.+
T Consensus       569 ~~L~Ls~N~l-~~ip------------~~--~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L  632 (636)
T 4eco_A          569 TQLQIGSNDI-RKVN------------EK--ITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL  632 (636)
T ss_dssp             CEEECCSSCC-CBCC------------SC--CCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred             CEEECCCCcC-CccC------------Hh--HhCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCccc
Confidence            9999999764 5543            22  23899999999985 444432221 1      12234456688999986


Q ss_pred             cc
Q 047733          482 KF  483 (508)
Q Consensus       482 ~~  483 (508)
                      .+
T Consensus       633 ~~  634 (636)
T 4eco_A          633 DI  634 (636)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.7e-25  Score=231.18  Aligned_cols=122  Identities=21%  Similarity=0.292  Sum_probs=58.0

Q ss_pred             CcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           39 KVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      +++++|++++|.+.++++  +..+++|++|++++|            .+..++...|.++++|++|++++|.++.+|.. 
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-   87 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN------------RIQYLDISVFKFNQELEYLDLSHNKLVKISCH-   87 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS------------CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCC------------ccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence            455555555555544432  224555555555552            12222222234555555555555555544443 


Q ss_pred             ccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhhHHHhccCCCC--ceEeccCCC
Q 047733          117 RLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHL--RLLDLSNCF  176 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L--~~L~l~~~~  176 (508)
                       .+++|++|++++|.++.   |..++++++|++|++++|.+..  ..+..+++|  ++|++++|.
T Consensus        88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred             -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence             45555555555555443   2445555555555555554443  123344444  555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=3.4e-25  Score=241.50  Aligned_cols=286  Identities=17%  Similarity=0.222  Sum_probs=178.6

Q ss_pred             CCCCCcCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCc
Q 047733           31 SWPDKDALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMH  108 (508)
Q Consensus        31 ~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  108 (508)
                      ..|.  .++++++|++++|.+..+.+  +..+++|++|++++           +.....++...|.++++|++|++++|.
T Consensus        18 ~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~-----------n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A           18 QVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS-----------QYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             CCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECT-----------TCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             CCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCC-----------CCCccccCHHHhcCCCCCCEEECCCCc
Confidence            4444  77899999999999977643  34999999999999           334555644556888999999999998


Q ss_pred             CCCC-chhhccCccccEEeccCCCCCC--ccc--cCCCCCCcEEEccCCCchhh--HHHhccCCCCceEeccCCCCCCcc
Q 047733          109 LLPL-PSSLRLFQNLQTLSLDYCELGD--IAI--VGDLKTLVILTLRGSDMEKL--VEEIGQLTHLRLLDLSNCFNLKVI  181 (508)
Q Consensus       109 ~~~l-~~~~~~l~~L~~L~l~~~~l~~--~~~--i~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~~  181 (508)
                      +..+ |..|+++++|++|++++|.+++  +..  ++++++|++|++++|.+..+  +..+.++++|++|++++|. +..+
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~  163 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLV  163 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCee
Confidence            8764 7788889999999999988775  443  88889999999999888754  2467888999999998876 3333


Q ss_pred             ChhhhhcC--CCCcEEEeecCCCcccc------------------------------ccCcC-C---CC-----------
Q 047733          182 PPNVISSL--SQLEELYIGESPIMWGK------------------------------VGGVD-G---EG-----------  214 (508)
Q Consensus       182 ~~~~l~~l--~~L~~L~l~~~~~~~~~------------------------------~~~~~-~---~~-----------  214 (508)
                      .+..+..+  ++|+.|+++.|.+....                              +.... .   ..           
T Consensus       164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence            22223433  45555555444332211                              00000 0   00           


Q ss_pred             ---------cccchhhccC--CCCccEEEEecccCccC-CCCCccCCCccEEEEEecCcccC-CCCCCCccceeeEEecc
Q 047733          215 ---------RNASLDELNN--LSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGDQWAW-DSPSDDISGIFQLTVAS  281 (508)
Q Consensus       215 ---------~~~~~~~l~~--l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~-~~~~~~~~~l~~l~L~~  281 (508)
                               .......+..  .++|+.|+++++..... +..+..+++|+.|.+..+..... ...+..+++|+.+.+..
T Consensus       244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~  323 (844)
T 3j0a_A          244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY  323 (844)
T ss_dssp             BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred             cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence                     0000001111  25677788777764433 34456777777777775543322 23345556676666665


Q ss_pred             CccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecC
Q 047733          282 GANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVEN  332 (508)
Q Consensus       282 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  332 (508)
                      +............+++|+.|++.++ .+..+... ....+++|++|+++++
T Consensus       324 N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          324 NLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             CCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETC
T ss_pred             CCCCccCHHHhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCC
Confidence            5433333333445677777777665 33333221 1245677777777764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=1.7e-25  Score=232.75  Aligned_cols=192  Identities=16%  Similarity=0.206  Sum_probs=151.7

Q ss_pred             EEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccc
Q 047733           44 ISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNL  122 (508)
Q Consensus        44 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L  122 (508)
                      .+.+++.+..+|... .++|++|++++|.            +..++...|.++++|++|++++|.++.++ ..|+++++|
T Consensus        10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~------------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   76 (549)
T 2z81_A           10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNK------------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL   76 (549)
T ss_dssp             EECTTSCCSSCCSCC-CTTCCEEECCSSC------------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             EECCCCccccccccC-CCCccEEECcCCc------------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccC
Confidence            677778888888744 4899999999943            33333333589999999999999998765 679999999


Q ss_pred             cEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchh--hHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733          123 QTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEK--LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG  198 (508)
Q Consensus       123 ~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  198 (508)
                      ++|++++|.++. + ..++++++|++|++++|.++.  .|..+.++++|++|++++|..++.++...+..+++|++|+++
T Consensus        77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence            999999999888 5 569999999999999998884  456788999999999999886778876448899999999999


Q ss_pred             cCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCC-ccCCCccEEEEEecC
Q 047733          199 ESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDL-SFFKMLQRYSILIGD  260 (508)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~i~~~~  260 (508)
                      +|.+...            .+..++.+++|+.|+++++.....+..+ ..+++|+.|.+..+.
T Consensus       157 ~n~l~~~------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          157 ALSLRNY------------QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             ETTCCEE------------CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred             CCccccc------------ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence            9987643            2355677777888888777655544443 346777777777544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=9.4e-25  Score=213.58  Aligned_cols=301  Identities=17%  Similarity=0.270  Sum_probs=162.4

Q ss_pred             CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733           38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR  117 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  117 (508)
                      ++++++|++.++.+..++.+..+++|++|++.+|            .+..++.  +..+++|++|++++|.++.++ .+.
T Consensus        43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n------------~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~  107 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN------------QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQ  107 (347)
T ss_dssp             HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS------------CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred             cccccEEEEeCCccccchhhhhcCCccEEEccCC------------ccccchh--hhcCCcCCEEEccCCcccCch-HHc
Confidence            4566667776666666665556666666666662            2222332  356666666666666665554 356


Q ss_pred             cCccccEEeccCCCCCCccccCCCCCCcEEEccCCC-chhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733          118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSD-MEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY  196 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  196 (508)
                      .+++|++|++++|.+++...+..+++|++|++++|. +..++ .+..+++|++|++++|. +..++.  +..+++|++|+
T Consensus       108 ~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~  183 (347)
T 4fmz_A          108 NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLS  183 (347)
T ss_dssp             TCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEE
T ss_pred             CCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEE
Confidence            666666666666666553235666666666666662 22222 35566666666666654 444443  45666666666


Q ss_pred             eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceee
Q 047733          197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQ  276 (508)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~  276 (508)
                      +++|.+..              +..+..+++|+.++++++.....+. +.                              
T Consensus       184 l~~n~l~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~-~~------------------------------  218 (347)
T 4fmz_A          184 LNYNQIED--------------ISPLASLTSLHYFTAYVNQITDITP-VA------------------------------  218 (347)
T ss_dssp             CTTSCCCC--------------CGGGGGCTTCCEEECCSSCCCCCGG-GG------------------------------
T ss_pred             ccCCcccc--------------cccccCCCccceeecccCCCCCCch-hh------------------------------
Confidence            66655431              1124455555555555554332222 22                              


Q ss_pred             EEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcc
Q 047733          277 LTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLE  356 (508)
Q Consensus       277 l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~  356 (508)
                                       .+++|++|++.++. ++....   ...+++|++|+++++ .++.+.        ....+++|+
T Consensus       219 -----------------~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~  268 (347)
T 4fmz_A          219 -----------------NMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTN-QISDIN--------AVKDLTKLK  268 (347)
T ss_dssp             -----------------GCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCCG--------GGTTCTTCC
T ss_pred             -----------------cCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCC-ccCCCh--------hHhcCCCcC
Confidence                             34555555555542 222221   245666666666664 333221        233456666


Q ss_pred             eeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCC
Q 047733          357 SLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNT  436 (508)
Q Consensus       357 ~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~  436 (508)
                      .|+++++ .++.+.    ....+++|++|++++| .+...++ .....+++|++|++++|+ +..+.             
T Consensus       269 ~L~l~~n-~l~~~~----~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~-------------  327 (347)
T 4fmz_A          269 MLNVGSN-QISDIS----VLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR-------------  327 (347)
T ss_dssp             EEECCSS-CCCCCG----GGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCG-------------
T ss_pred             EEEccCC-ccCCCh----hhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-ccccc-------------
Confidence            6666665 233331    2345677777777776 3444333 334567777777777765 33332             


Q ss_pred             ceeeccccCeeEcCCCc
Q 047733          437 QVIELTQLTILELCYLP  453 (508)
Q Consensus       437 ~~~~~~~L~~L~l~~c~  453 (508)
                      .+..+++|++|++++|+
T Consensus       328 ~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          328 PLASLSKMDSADFANQV  344 (347)
T ss_dssp             GGGGCTTCSEESSSCC-
T ss_pred             Chhhhhccceeehhhhc
Confidence            13456777777777763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=5.7e-24  Score=219.73  Aligned_cols=386  Identities=15%  Similarity=0.148  Sum_probs=223.6

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccCc
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQ  120 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~  120 (508)
                      ++++++++.+..+|.... ++|++|++++            +.+..++...|.++++|++|++++|.++.+ |..|++++
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~------------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   69 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQ------------NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ   69 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCS------------SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT
T ss_pred             ceEecCCCCccccccccc-ccccEEECCC------------CcccccChhhccccccccEEecCCCccCCcChHHhhccc
Confidence            689999999999987554 8999999999            344555655569999999999999999876 67899999


Q ss_pred             cccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchh--hHHHhccCCCCceEeccCCCCCCccChhhhhcCCCC--cEE
Q 047733          121 NLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEK--LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL--EEL  195 (508)
Q Consensus       121 ~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L  195 (508)
                      +|++|++++|+++. |..  .+++|++|++++|.++.  +|..++.+++|++|++++|. +...   .+..+++|  ++|
T Consensus        70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L  143 (520)
T 2z7x_B           70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKV  143 (520)
T ss_dssp             TCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEE
T ss_pred             CCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEE
Confidence            99999999999988 544  89999999999999885  56889999999999999987 4442   26778888  999


Q ss_pred             EeecCCC--ccccccCcCCCC--------------cccchhhccCCCCccEEEEeccc-------CccCCCCCccC----
Q 047733          196 YIGESPI--MWGKVGGVDGEG--------------RNASLDELNNLSKLTSLEILIED-------EKTLPRDLSFF----  248 (508)
Q Consensus       196 ~l~~~~~--~~~~~~~~~~~~--------------~~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~~l~~~----  248 (508)
                      ++++|.+  ....++....-.              .......+..+++|+.++++++.       .......+..+    
T Consensus       144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~  223 (520)
T 2z7x_B          144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS  223 (520)
T ss_dssp             EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC
T ss_pred             EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh
Confidence            9999987  332221100000              00000122334455555554432       00000011222    


Q ss_pred             -----------------------CCccEEEEEecCcc-cCCCCC-----CCccceeeEEeccCccccccchhhhcc---c
Q 047733          249 -----------------------KMLQRYSILIGDQW-AWDSPS-----DDISGIFQLTVASGANICLNGGHIMQL---K  296 (508)
Q Consensus       249 -----------------------~~L~~L~i~~~~~~-~~~~~~-----~~~~~l~~l~L~~~~~~~~~~~~~~~~---~  296 (508)
                                             ++|+.|.+..+... ......     ..++.++.+.+..... ..+......+   .
T Consensus       224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~  302 (520)
T 2z7x_B          224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNM  302 (520)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTC
T ss_pred             hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccC
Confidence                                   35555555544322 112222     4445555555544332 2221111111   3


Q ss_pred             ceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccc
Q 047733          297 GIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAA  376 (508)
Q Consensus       297 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~  376 (508)
                      +|+.|++.++.. ....   ....+++|++|+++++. ++...  ..    ....+++|+.|.++++. ++.+...+...
T Consensus       303 ~L~~L~l~~n~l-~~~~---~~~~l~~L~~L~Ls~n~-l~~~~--~~----~~~~l~~L~~L~L~~N~-l~~l~~~~~~~  370 (520)
T 2z7x_B          303 NIKNFTVSGTRM-VHML---CPSKISPFLHLDFSNNL-LTDTV--FE----NCGHLTELETLILQMNQ-LKELSKIAEMT  370 (520)
T ss_dssp             CCSEEEEESSCC-CCCC---CCSSCCCCCEEECCSSC-CCTTT--TT----TCCCCSSCCEEECCSSC-CCBHHHHHHHH
T ss_pred             ceeEEEcCCCcc-cccc---chhhCCcccEEEeECCc-cChhh--hh----hhccCCCCCEEEccCCc-cCccccchHHH
Confidence            466666666532 2211   01456777777777643 22210  00    23456777777777653 33221111123


Q ss_pred             cccccCCeEEEcCCCCcce-ecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccc
Q 047733          377 ESFCQLRDMRVNGCDKLKN-VFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQL  455 (508)
Q Consensus       377 ~~~~~L~~L~l~~c~~l~~-l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L  455 (508)
                      ..+++|++|+++++ .+.. ++. .....+++|++|++++|.--..++.            .+  .++|++|++++| ++
T Consensus       371 ~~l~~L~~L~Ls~N-~l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l--~~~L~~L~Ls~N-~l  433 (520)
T 2z7x_B          371 TQMKSLQQLDISQN-SVSYDEKK-GDCSWTKSLLSLNMSSNILTDTIFR------------CL--PPRIKVLDLHSN-KI  433 (520)
T ss_dssp             TTCTTCCEEECCSS-CCBCCGGG-CSCCCCTTCCEEECCSSCCCGGGGG------------SC--CTTCCEEECCSS-CC
T ss_pred             hhCCCCCEEECCCC-cCCccccc-chhccCccCCEEECcCCCCCcchhh------------hh--cccCCEEECCCC-cc
Confidence            45677777777775 3444 432 2235566777777776642222211            00  145555555555 44


Q ss_pred             cccccCccccccCCccEEEEeeC
Q 047733          456 TSFCTGDLHFEFPSLEKLRILEC  478 (508)
Q Consensus       456 ~~~~~~~~~~~~p~L~~L~i~~C  478 (508)
                      +.++....  .+++|+.|++++|
T Consensus       434 ~~ip~~~~--~l~~L~~L~L~~N  454 (520)
T 2z7x_B          434 KSIPKQVV--KLEALQELNVASN  454 (520)
T ss_dssp             CCCCGGGG--GCTTCCEEECCSS
T ss_pred             cccchhhh--cCCCCCEEECCCC
Confidence            44443222  3455555555555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=5.1e-24  Score=216.78  Aligned_cols=326  Identities=21%  Similarity=0.259  Sum_probs=231.1

Q ss_pred             cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733           36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS  115 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  115 (508)
                      ..++++++|++++|.+.+++++..+++|++|++.+|            ....++.  +.++++|++|++++|.++.++. 
T Consensus        65 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n------------~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-  129 (466)
T 1o6v_A           65 EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN------------QIADITP--LANLTNLTGLTLFNNQITDIDP-  129 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS------------CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             hhhcCCCEEECCCCccCCchhhhccccCCEEECCCC------------ccccChh--hcCCCCCCEEECCCCCCCCChH-
Confidence            457899999999999998888779999999999984            3333443  5899999999999999998876 


Q ss_pred             hccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733          116 LRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL  195 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  195 (508)
                      +.++++|++|++++|.++....++.+++|++|++++ .+..++. +.++++|++|++++|. +..++.  +..+++|++|
T Consensus       130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L  204 (466)
T 1o6v_A          130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESL  204 (466)
T ss_dssp             GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEE
T ss_pred             HcCCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEE
Confidence            899999999999999988866699999999999974 4444443 8899999999999987 666654  7899999999


Q ss_pred             EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCcccee
Q 047733          196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIF  275 (508)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~  275 (508)
                      ++++|.+...              ..++.+++|+.|+++++....++ .+..+++|+.|.+..+......          
T Consensus       205 ~l~~n~l~~~--------------~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~----------  259 (466)
T 1o6v_A          205 IATNNQISDI--------------TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA----------  259 (466)
T ss_dssp             ECCSSCCCCC--------------GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG----------
T ss_pred             EecCCccccc--------------ccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccch----------
Confidence            9999887622              22677889999999998866553 4568889999888754421110          


Q ss_pred             eEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCc
Q 047733          276 QLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVL  355 (508)
Q Consensus       276 ~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L  355 (508)
                                     ....+++|++|++.++ .++....   ...+++|++|++++| .++.+.        ....+++|
T Consensus       260 ---------------~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~--------~~~~l~~L  311 (466)
T 1o6v_A          260 ---------------PLSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNEN-QLEDIS--------PISNLKNL  311 (466)
T ss_dssp             ---------------GGTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCSCCG--------GGGGCTTC
T ss_pred             ---------------hhhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCC-cccCch--------hhcCCCCC
Confidence                           1234567777777665 3333322   345677777777764 333221        23456777


Q ss_pred             ceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCC
Q 047733          356 ESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSN  435 (508)
Q Consensus       356 ~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~  435 (508)
                      +.|+++++. ++...    +...+++|++|++++| .+..++   ....+++|+.|++++|+ +..+.            
T Consensus       312 ~~L~L~~n~-l~~~~----~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~------------  369 (466)
T 1o6v_A          312 TYLTLYFNN-ISDIS----PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLT------------  369 (466)
T ss_dssp             SEEECCSSC-CSCCG----GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCG------------
T ss_pred             CEEECcCCc-CCCch----hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccc------------
Confidence            777777763 33321    2356677777777776 455542   24567777777777764 33322            


Q ss_pred             CceeeccccCeeEcCCCcccccc
Q 047733          436 TQVIELTQLTILELCYLPQLTSF  458 (508)
Q Consensus       436 ~~~~~~~~L~~L~l~~c~~L~~~  458 (508)
                       .+..+++|+.|++++| .++.+
T Consensus       370 -~~~~l~~L~~L~l~~n-~~~~~  390 (466)
T 1o6v_A          370 -PLANLTRITQLGLNDQ-AWTNA  390 (466)
T ss_dssp             -GGTTCTTCCEEECCCE-EEECC
T ss_pred             -hhhcCCCCCEEeccCC-cccCC
Confidence             1344677777777776 34443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=7.4e-24  Score=220.87  Aligned_cols=143  Identities=20%  Similarity=0.299  Sum_probs=110.0

Q ss_pred             ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccC
Q 047733           41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLF  119 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l  119 (508)
                      .++++++++.+.++|... .++|++|++++|            .+..++...|.++++|++|++++|.++.+ |..|..+
T Consensus        33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N------------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   99 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQN------------SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN   99 (562)
T ss_dssp             CCEEECTTSCCCSCCTTS-CTTCCEEECCSS------------CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred             CcEEEcCCCCCccCCCCC-CCCcCEEECCCC------------CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence            378899999888888643 378999999883            34445544458889999999999988865 5678889


Q ss_pred             ccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH--HHhccCCCCceEeccCCCCCCccChhhhhcCCCC--cE
Q 047733          120 QNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV--EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL--EE  194 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~  194 (508)
                      ++|++|++++|.++. |..  .+++|++|++++|.++.++  ..+.++++|++|++++|. +....   +..+++|  ++
T Consensus       100 ~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~  173 (562)
T 3a79_B          100 QDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSC  173 (562)
T ss_dssp             TTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEE
T ss_pred             CCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeE
Confidence            999999999998887 544  7889999999999888654  678889999999998876 43322   3455555  88


Q ss_pred             EEeecCCC
Q 047733          195 LYIGESPI  202 (508)
Q Consensus       195 L~l~~~~~  202 (508)
                      |++++|.+
T Consensus       174 L~L~~n~l  181 (562)
T 3a79_B          174 ILLDLVSY  181 (562)
T ss_dssp             EEEEESSC
T ss_pred             EEeecccc
Confidence            88888876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=4.9e-23  Score=209.05  Aligned_cols=361  Identities=17%  Similarity=0.201  Sum_probs=195.5

Q ss_pred             EEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC-CC-chhhccCc
Q 047733           43 AISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL-PL-PSSLRLFQ  120 (508)
Q Consensus        43 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-~~~~~~l~  120 (508)
                      .++..++.+..+|.  -.++|++|++++|.            +..++...|.++++|++|++++|.+. .+ +..|..++
T Consensus        14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~------------i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~   79 (455)
T 3v47_A           14 NAICINRGLHQVPE--LPAHVNYVDLSLNS------------IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS   79 (455)
T ss_dssp             EEECCSSCCSSCCC--CCTTCCEEECCSSC------------CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred             ccCcCCCCcccCCC--CCCccCEEEecCCc------------cCcCChhHhccCccccEEECcCCcccceECcccccccc
Confidence            45555555555655  23566666666622            22222222356666666776666664 33 34566666


Q ss_pred             cccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchh-hHHH--hccCCCCceEeccCCCCCCcc-ChhhhhcCCCCcE
Q 047733          121 NLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEK-LVEE--IGQLTHLRLLDLSNCFNLKVI-PPNVISSLSQLEE  194 (508)
Q Consensus       121 ~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~  194 (508)
                      +|++|++++|.++.  +..++++++|++|++++|.++. ++..  +..+++|++|++++|. +..+ |...+..+++|++
T Consensus        80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~  158 (455)
T 3v47_A           80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHV  158 (455)
T ss_dssp             TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCE
T ss_pred             cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccE
Confidence            67777776666654  4566666677777776666653 3433  5666667777776666 3333 3333556667777


Q ss_pred             EEeecCCCccccccCcCCCCcccchhhccCC--CCccEEEEecccCccCCCC---------CccCCCccEEEEEecCccc
Q 047733          195 LYIGESPIMWGKVGGVDGEGRNASLDELNNL--SKLTSLEILIEDEKTLPRD---------LSFFKMLQRYSILIGDQWA  263 (508)
Q Consensus       195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~---------l~~~~~L~~L~i~~~~~~~  263 (508)
                      |++++|.+....+            ..+..+  .+|+.|+++++.....+..         +..+++|+.|.++.+.   
T Consensus       159 L~L~~n~l~~~~~------------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~---  223 (455)
T 3v47_A          159 LDLTFNKVKSICE------------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG---  223 (455)
T ss_dssp             EECTTCCBSCCCT------------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC---
T ss_pred             EeCCCCcccccCh------------hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc---
Confidence            7766666542211            112222  4566666666654433322         1122344444333211   


Q ss_pred             CCCCCCCccceeeEEeccCccccc-cchh--hhcccceeEEEecCCCCcccccc----------CCcCCCCCCCcEEEEe
Q 047733          264 WDSPSDDISGIFQLTVASGANICL-NGGH--IMQLKGIKELCLGGSLDMKSVLY----------GSHGEGFPQLKHLEVV  330 (508)
Q Consensus       264 ~~~~~~~~~~l~~l~L~~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~~~L~~L~l~  330 (508)
                                          .... +..+  ....++|+.|++.++........          .+.....++|++|+++
T Consensus       224 --------------------l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  283 (455)
T 3v47_A          224 --------------------FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS  283 (455)
T ss_dssp             --------------------CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred             --------------------ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec
Confidence                                0000 0000  01125666666665432221100          0001123678888887


Q ss_pred             cCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcE
Q 047733          331 ENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQF  410 (508)
Q Consensus       331 ~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~  410 (508)
                      ++. ++.+..  .    ....+++|+.|+++++. ++.+.  +.....+++|++|+++++ .+..+++ .....+++|++
T Consensus       284 ~n~-l~~~~~--~----~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~  351 (455)
T 3v47_A          284 KSK-IFALLK--S----VFSHFTDLEQLTLAQNE-INKID--DNAFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEV  351 (455)
T ss_dssp             SSC-CCEECT--T----TTTTCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCE
T ss_pred             Ccc-ccccch--h----hcccCCCCCEEECCCCc-ccccC--hhHhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCE
Confidence            753 333211  0    23456788888887754 33332  112346788888888887 5666644 34467788888


Q ss_pred             EeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCC
Q 047733          411 IEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECP  479 (508)
Q Consensus       411 L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~  479 (508)
                      |+++++. +..+.           +..+..+++|++|+++++ ++++++...+ ..+++|+.|+++++|
T Consensus       352 L~Ls~N~-l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          352 LDLSYNH-IRALG-----------DQSFLGLPNLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNP  406 (455)
T ss_dssp             EECCSSC-CCEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             EECCCCc-ccccC-----------hhhccccccccEEECCCC-ccccCCHhHh-ccCCcccEEEccCCC
Confidence            8888764 33332           234455788888888886 6777665433 256788888887654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=1.6e-23  Score=228.33  Aligned_cols=299  Identities=15%  Similarity=0.166  Sum_probs=205.0

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcC-CCC-chhhccC
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHL-LPL-PSSLRLF  119 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l-~~~~~~l  119 (508)
                      +..+.+++.+..+|.  -.++|++|++++|.+            ..++...|.++++|++|++++|.. ..+ |..|+++
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i------------~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L   72 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI------------RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL   72 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCC------------CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcC------------CccChhHCcccccCeEEeCCCCCCccccCHHHhcCC
Confidence            466777888899998  568999999999443            333323358999999999999955 456 6789999


Q ss_pred             ccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchh-hHHH--hccCCCCceEeccCCCCCCcc-ChhhhhcCCCCc
Q 047733          120 QNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEK-LVEE--IGQLTHLRLLDLSNCFNLKVI-PPNVISSLSQLE  193 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~  193 (508)
                      ++|++|++++|.++.  |..++++++|++|++++|.+.. +|..  +.++++|++|++++|. +..+ +...++.+++|+
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCC
T ss_pred             CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCC
Confidence            999999999999886  6899999999999999998874 4544  7899999999999998 4444 333479999999


Q ss_pred             EEEeecCCCccccccCc--------------CCCCcccchhhccCCC------CccEEEEecccC-ccCCCCC-------
Q 047733          194 ELYIGESPIMWGKVGGV--------------DGEGRNASLDELNNLS------KLTSLEILIEDE-KTLPRDL-------  245 (508)
Q Consensus       194 ~L~l~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~l~------~L~~L~l~~~~~-~~~~~~l-------  245 (508)
                      +|++++|.+....+...              ...-....+..++.++      .|+.|+++++.. ...+..+       
T Consensus       152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~  231 (844)
T 3j0a_A          152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS  231 (844)
T ss_dssp             EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred             EEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence            99999998764322100              0000011112223333      388888887741 1111111       


Q ss_pred             -----------------------------c--cCCCccEEEEEecCcccC-CCCCCCccceeeEEeccCccccccchhhh
Q 047733          246 -----------------------------S--FFKMLQRYSILIGDQWAW-DSPSDDISGIFQLTVASGANICLNGGHIM  293 (508)
Q Consensus       246 -----------------------------~--~~~~L~~L~i~~~~~~~~-~~~~~~~~~l~~l~L~~~~~~~~~~~~~~  293 (508)
                                                   .  ..++|+.|.+..+..... ...+..+++|+.+.+..+...........
T Consensus       232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  311 (844)
T 3j0a_A          232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY  311 (844)
T ss_dssp             CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred             cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc
Confidence                                         0  125677787765443222 33456677788888887665555445556


Q ss_pred             cccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcc
Q 047733          294 QLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLR  364 (508)
Q Consensus       294 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~  364 (508)
                      .+++|++|++.++. ++..... ....+++|++|+++++ .++.+...      ....+++|+.|+++++.
T Consensus       312 ~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~i~~~~~~------~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          312 GLDNLQVLNLSYNL-LGELYSS-NFYGLPKVAYIDLQKN-HIAIIQDQ------TFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             TCSSCCEEEEESCC-CSCCCSC-SCSSCTTCCEEECCSC-CCCCCCSS------CSCSCCCCCEEEEETCC
T ss_pred             CCCCCCEEECCCCC-CCccCHH-HhcCCCCCCEEECCCC-CCCccChh------hhcCCCCCCEEECCCCC
Confidence            78999999998874 4433222 2367899999999986 45443211      23456788888887753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=8.2e-23  Score=216.25  Aligned_cols=135  Identities=23%  Similarity=0.263  Sum_probs=113.7

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      ++++++++|++++|.+..+++  +.++++|++|++++|            .+..++...|.++++|++|++++|+++.+|
T Consensus        49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N------------~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~  116 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLA  116 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC------------CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC------------cCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence            567889999999999998875  349999999999994            445566666789999999999999999887


Q ss_pred             -hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCch--hhHHHhccCCCCceEeccCCCCCCccCh
Q 047733          114 -SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDME--KLVEEIGQLTHLRLLDLSNCFNLKVIPP  183 (508)
Q Consensus       114 -~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~  183 (508)
                       ..|.++++|++|++++|+++. + ..++++++|++|++++|.++  .+|..+..+++|++|++++|. +..++.
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~  190 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC  190 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECG
T ss_pred             HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccc
Confidence             468899999999999999887 4 56899999999999999887  456778899999999999987 655554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.91  E-value=7.8e-24  Score=214.98  Aligned_cols=364  Identities=17%  Similarity=0.155  Sum_probs=248.0

Q ss_pred             CCCcccEEEeecCCCCCCC-C-CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-c
Q 047733           37 ALKVCTAISLKNSNISELP-Q-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-P  113 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~  113 (508)
                      ..+++++|++++|.+.+++ . +..+++|++|++.+|           .....++...|.++++|++|++++|.+..+ |
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-----------~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~   96 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-----------TPGLVIRNNTFRGLSSLIILKLDYNQFLQLET   96 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-----------STTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-----------cccceECcccccccccCCEEeCCCCccCccCh
Confidence            5688999999999997763 3 349999999999993           333355555568999999999999999865 7


Q ss_pred             hhhccCccccEEeccCCCCCC--ccc--cCCCCCCcEEEccCCCchhh-HHH-hccCCCCceEeccCCCCCCccChhhhh
Q 047733          114 SSLRLFQNLQTLSLDYCELGD--IAI--VGDLKTLVILTLRGSDMEKL-VEE-IGQLTHLRLLDLSNCFNLKVIPPNVIS  187 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~--~~~--i~~l~~L~~L~l~~~~i~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~  187 (508)
                      ..++++++|++|++++|.+++  +..  ++++++|++|++++|.+..+ |.. +..+++|++|++++|. +..+++..+.
T Consensus        97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~  175 (455)
T 3v47_A           97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLL  175 (455)
T ss_dssp             TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSG
T ss_pred             hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhh
Confidence            889999999999999999886  444  89999999999999998866 544 7899999999999988 5554443355


Q ss_pred             cC--CCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCc-cCCCCCc---cCCCccEEEEEecCc
Q 047733          188 SL--SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEK-TLPRDLS---FFKMLQRYSILIGDQ  261 (508)
Q Consensus       188 ~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~---~~~~L~~L~i~~~~~  261 (508)
                      .+  .+|+.|++..+.+.....    ..........+..+++|+.|+++++... ..+..+.   ..++|+.+.+..+..
T Consensus       176 ~l~~~~L~~L~l~~n~l~~~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          176 NFQGKHFTLLRLSSITLQDMNE----YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             GGTTCEEEEEECTTCBCTTCST----TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred             ccccccccccccccCcccccch----hhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence            55  789999999887763221    0000111123446688999999988733 2232221   236777777654432


Q ss_pred             ccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeec
Q 047733          262 WAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDT  341 (508)
Q Consensus       262 ~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~  341 (508)
                      .............           ..........++|+.|++.++. +...... ....+++|++|+++++ .++.+.. 
T Consensus       252 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~-  316 (455)
T 3v47_A          252 MGSSFGHTNFKDP-----------DNFTFKGLEASGVKTCDLSKSK-IFALLKS-VFSHFTDLEQLTLAQN-EINKIDD-  316 (455)
T ss_dssp             TSCCTTCCSSCCC-----------CTTTTGGGTTSCCCEEECCSSC-CCEECTT-TTTTCTTCCEEECTTS-CCCEECT-
T ss_pred             cccccchhhhccC-----------cccccccccccCceEEEecCcc-ccccchh-hcccCCCCCEEECCCC-cccccCh-
Confidence            1110000000000           0000001134789999998864 3333222 1367899999999885 4544321 


Q ss_pred             ccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhh
Q 047733          342 VDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDV  421 (508)
Q Consensus       342 ~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~  421 (508)
                       .    ....+++|+.|+++++. ++.+.  +.....+++|++|+++++ .+..+++ .....+++|++|+++++. ++.
T Consensus       317 -~----~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~  385 (455)
T 3v47_A          317 -N----AFWGLTHLLKLNLSQNF-LGSID--SRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTNQ-LKS  385 (455)
T ss_dssp             -T----TTTTCTTCCEEECCSSC-CCEEC--GGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CSC
T ss_pred             -h----HhcCcccCCEEECCCCc-cCCcC--hhHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCCc-ccc
Confidence             1    23467899999999874 44432  123356899999999998 6777755 345778999999999864 555


Q ss_pred             hhccccCCcCCCCCCceeeccccCeeEcCCCc
Q 047733          422 IFAAERGDESSNSNTQVIELTQLTILELCYLP  453 (508)
Q Consensus       422 i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  453 (508)
                      +.           ...+..+++|++|++++++
T Consensus       386 ~~-----------~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          386 VP-----------DGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CC-----------TTTTTTCTTCCEEECCSSC
T ss_pred             CC-----------HhHhccCCcccEEEccCCC
Confidence            43           2334568999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=1e-23  Score=209.61  Aligned_cols=303  Identities=15%  Similarity=0.188  Sum_probs=191.8

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--c
Q 047733           59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--I  135 (508)
Q Consensus        59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~  135 (508)
                      .+++++.|++.+            +....+|..+|..+++|++|++++|.++.++ ..+..+++|++|++++|.++.  +
T Consensus        43 ~l~~l~~l~l~~------------~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  110 (390)
T 3o6n_A           43 TLNNQKIVTFKN------------STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP  110 (390)
T ss_dssp             GGCCCSEEEEES------------CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ccCCceEEEecC------------CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence            567888888877            4455666666778888888888888887655 467788888888888888776  3


Q ss_pred             cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCC
Q 047733          136 AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEG  214 (508)
Q Consensus       136 ~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  214 (508)
                      ..++++++|++|++++|.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.++..         
T Consensus       111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------  180 (390)
T 3o6n_A          111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV---------  180 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC---------
T ss_pred             HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc---------
Confidence            5678888888888888888877765 4678888888888876 5566554467788888888888776511         


Q ss_pred             cccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhc
Q 047733          215 RNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQ  294 (508)
Q Consensus       215 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~  294 (508)
                            .++.+++|+.|+++++....++    ..++|+.+.+..+...                       ..+   ...
T Consensus       181 ------~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~-----------------------~~~---~~~  224 (390)
T 3o6n_A          181 ------DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSIN-----------------------VVR---GPV  224 (390)
T ss_dssp             ------CGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCC-----------------------EEE---CCC
T ss_pred             ------ccccccccceeecccccccccC----CCCcceEEECCCCeee-----------------------ecc---ccc
Confidence                  2455677888887776543322    2345555554422210                       000   012


Q ss_pred             ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcc
Q 047733          295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPL  374 (508)
Q Consensus       295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~  374 (508)
                      +++|+.|++.++. ++...   ....+++|++|+++++ .++.+..  .    ....+++|+.|.++++ .++.++   .
T Consensus       225 ~~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~Ls~n-~l~~~~~--~----~~~~l~~L~~L~L~~n-~l~~~~---~  289 (390)
T 3o6n_A          225 NVELTILKLQHNN-LTDTA---WLLNYPGLVEVDLSYN-ELEKIMY--H----PFVKMQRLERLYISNN-RLVALN---L  289 (390)
T ss_dssp             CSSCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSS-CCCEEES--G----GGTTCSSCCEEECCSS-CCCEEE---C
T ss_pred             cccccEEECCCCC-CcccH---HHcCCCCccEEECCCC-cCCCcCh--h----HccccccCCEEECCCC-cCcccC---c
Confidence            4677777776653 33321   2345777888888775 3443311  0    2234677777777774 344432   2


Q ss_pred             cccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCC
Q 047733          375 AAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYL  452 (508)
Q Consensus       375 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  452 (508)
                      ....+++|++|++++| .+..++..  ...+++|++|++++++ +..+              .+..+++|++|+++++
T Consensus       290 ~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~--------------~~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          290 YGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTL--------------KLSTHHTLKNLTLSHN  349 (390)
T ss_dssp             SSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCC--------------CCCTTCCCSEEECCSS
T ss_pred             ccCCCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-ccee--------------CchhhccCCEEEcCCC
Confidence            2245677777777776 55555432  3556777777777654 3222              1334667777777765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=2.2e-23  Score=203.76  Aligned_cols=281  Identities=19%  Similarity=0.249  Sum_probs=211.7

Q ss_pred             cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733           36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS  115 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  115 (508)
                      ..++++++|++++|.+.+++.+..+++|++|++.+|.+            ..++ . +.++++|++|++++|.+..++. 
T Consensus        63 ~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i------------~~~~-~-~~~l~~L~~L~l~~n~i~~~~~-  127 (347)
T 4fmz_A           63 EYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI------------TDIS-A-LQNLTNLRELYLNEDNISDISP-  127 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC------------CCCG-G-GTTCTTCSEEECTTSCCCCCGG-
T ss_pred             hhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc------------cCch-H-HcCCCcCCEEECcCCcccCchh-
Confidence            45789999999999999888877999999999999433            3333 2 5899999999999999998877 


Q ss_pred             hccCccccEEeccCCC-CCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcE
Q 047733          116 LRLFQNLQTLSLDYCE-LGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE  194 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~-l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  194 (508)
                      +..+++|++|++++|. +..+..+..+++|++|++++|.+..++. +..+++|++|++++|. +..++.  +..+++|+.
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~  203 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHY  203 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCE
T ss_pred             hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccce
Confidence            8899999999999997 5557779999999999999998887765 8899999999999987 777766  689999999


Q ss_pred             EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccce
Q 047733          195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGI  274 (508)
Q Consensus       195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l  274 (508)
                      |++.+|.+...              ..+..+++|+.|+++++.....+. +..+                          
T Consensus       204 L~l~~n~l~~~--------------~~~~~~~~L~~L~l~~n~l~~~~~-~~~l--------------------------  242 (347)
T 4fmz_A          204 FTAYVNQITDI--------------TPVANMTRLNSLKIGNNKITDLSP-LANL--------------------------  242 (347)
T ss_dssp             EECCSSCCCCC--------------GGGGGCTTCCEEECCSSCCCCCGG-GTTC--------------------------
T ss_pred             eecccCCCCCC--------------chhhcCCcCCEEEccCCccCCCcc-hhcC--------------------------
Confidence            99999877622              227788999999999887554443 3334                          


Q ss_pred             eeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcC
Q 047733          275 FQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPV  354 (508)
Q Consensus       275 ~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~  354 (508)
                                           ++|++|++.++ .++.+.   ....+++|++|++++| .++.+.        ....+++
T Consensus       243 ---------------------~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~  288 (347)
T 4fmz_A          243 ---------------------SQLTWLEIGTN-QISDIN---AVKDLTKLKMLNVGSN-QISDIS--------VLNNLSQ  288 (347)
T ss_dssp             ---------------------TTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSS-CCCCCG--------GGGGCTT
T ss_pred             ---------------------CCCCEEECCCC-ccCCCh---hHhcCCCcCEEEccCC-ccCCCh--------hhcCCCC
Confidence                                 44555555444 222221   1245677777777775 344321        2345788


Q ss_pred             cceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733          355 LESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ  417 (508)
Q Consensus       355 L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  417 (508)
                      |+.|++++|. ++...  +.....+++|++|++++|+ ++.+++   ...+++|++|++++++
T Consensus       289 L~~L~L~~n~-l~~~~--~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          289 LNSLFLNNNQ-LGNED--MEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             CSEEECCSSC-CCGGG--HHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             CCEEECcCCc-CCCcC--hhHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence            8888888874 33321  1123467899999999984 676655   4778999999999875

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.1e-22  Score=205.53  Aligned_cols=302  Identities=15%  Similarity=0.097  Sum_probs=203.6

Q ss_pred             CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      .++++++|++++|.+.++|.+..+++|++|++++|.+            ..+|   ++.+++|++|++++|.++.++  +
T Consensus        40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l------------~~~~---~~~l~~L~~L~Ls~N~l~~~~--~  102 (457)
T 3bz5_A           40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI------------TTLD---LSQNTNLTYLACDSNKLTNLD--V  102 (457)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC------------SCCC---CTTCTTCSEEECCSSCCSCCC--C
T ss_pred             HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC------------CeEc---cccCCCCCEEECcCCCCceee--c
Confidence            3688999999999999888777999999999999433            3333   478999999999999998875  8


Q ss_pred             ccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733          117 RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY  196 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  196 (508)
                      +++++|++|++++|.++... ++.+++|++|++++|.++.++  +..+++|++|++++|..++.++   +..+++|+.|+
T Consensus       103 ~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~  176 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLD  176 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEE
T ss_pred             CCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEE
Confidence            89999999999999988743 889999999999999988774  7889999999999997677663   67899999999


Q ss_pred             eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceee
Q 047733          197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQ  276 (508)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~  276 (508)
                      +++|.++.             + . ++.+++|+.|+++++.....+  +..+++|+.|.+..+..... + .        
T Consensus       177 ls~n~l~~-------------l-~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p-~--------  229 (457)
T 3bz5_A          177 CSFNKITE-------------L-D-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-D-V--------  229 (457)
T ss_dssp             CCSSCCCC-------------C-C-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C-C--------
T ss_pred             CCCCccce-------------e-c-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-C-c--------
Confidence            99998761             1 1 678889999999998866653  66788888888865442211 1 1        


Q ss_pred             EEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeeccc--CCCCCCCcCcC
Q 047733          277 LTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVD--RATAPTTAFPV  354 (508)
Q Consensus       277 l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~--~~~~~~~~~p~  354 (508)
                                      ..+++|+.|++.++ .++...    ...+++|+.|.+.. ++++.+.-...  ....+...+++
T Consensus       230 ----------------~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~L~l~~-n~L~~L~l~~n~~~~~~~~~~l~~  287 (457)
T 3bz5_A          230 ----------------TPLTQLTYFDCSVN-PLTELD----VSTLSKLTTLHCIQ-TDLLEIDLTHNTQLIYFQAEGCRK  287 (457)
T ss_dssp             ----------------TTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECTT-CCCSCCCCTTCTTCCEEECTTCTT
T ss_pred             ----------------cccCCCCEEEeeCC-cCCCcC----HHHCCCCCEEeccC-CCCCEEECCCCccCCccccccccc
Confidence                            23456666666554 233221    23345555444433 12221100000  00002234566


Q ss_pred             cceeeccCcccccccccC-----cccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecc
Q 047733          355 LESLFLRDLRNLEKICRG-----PLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTE  415 (508)
Q Consensus       355 L~~L~l~~c~~l~~~~~~-----~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~  415 (508)
                      |+.|++++|..+..++..     .+....+++|++|+++++ .++.++    +..+++|+.|++++
T Consensus       288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVN  348 (457)
T ss_dssp             CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCS
T ss_pred             CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc----cccCCcCcEEECCC
Confidence            777777776655444311     011223455555555554 344431    35567777777655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=1.5e-22  Score=210.98  Aligned_cols=149  Identities=15%  Similarity=0.188  Sum_probs=115.4

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--c
Q 047733           59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--I  135 (508)
Q Consensus        59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~  135 (508)
                      .+...++++++++            ....+|..+   .++|++|++++|.++.++ ..+.++++|++|++++|.++.  +
T Consensus        29 ~~~~~~~l~ls~~------------~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~   93 (562)
T 3a79_B           29 SNELESMVDYSNR------------NLTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF   93 (562)
T ss_dssp             ----CCEEECTTS------------CCCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT
T ss_pred             ccCCCcEEEcCCC------------CCccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH
Confidence            5566689999984            344455544   378999999999999876 689999999999999999987  5


Q ss_pred             cccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccCh-hhhhcCCCCcEEEeecCCCccccccCcCCCC
Q 047733          136 AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPP-NVISSLSQLEELYIGESPIMWGKVGGVDGEG  214 (508)
Q Consensus       136 ~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  214 (508)
                      ..++++++|++|++++|.++.+|..  .+++|++|++++|. +..++. ..++.+++|++|++++|.+...         
T Consensus        94 ~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---------  161 (562)
T 3a79_B           94 HVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL---------  161 (562)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT---------
T ss_pred             HHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccC---------
Confidence            7899999999999999999999866  89999999999988 666542 2389999999999999887521         


Q ss_pred             cccchhhccCCCCccEEEEecccC
Q 047733          215 RNASLDELNNLSKLTSLEILIEDE  238 (508)
Q Consensus       215 ~~~~~~~l~~l~~L~~L~l~~~~~  238 (508)
                         .+..+..+ +|+.|+++++..
T Consensus       162 ---~~~~l~~L-~L~~L~L~~n~l  181 (562)
T 3a79_B          162 ---DLLPVAHL-HLSCILLDLVSY  181 (562)
T ss_dssp             ---TTGGGTTS-CEEEEEEEESSC
T ss_pred             ---chhhhhhc-eeeEEEeecccc
Confidence               12233333 447777776653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=4e-23  Score=208.79  Aligned_cols=274  Identities=18%  Similarity=0.144  Sum_probs=195.6

Q ss_pred             CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCCccc
Q 047733           58 FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAI  137 (508)
Q Consensus        58 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~  137 (508)
                      ..+++|++|++++|.            ...+| . +..+++|++|++++|.++.+|  ++.+++|++|++++|.++... 
T Consensus        39 ~~l~~L~~L~Ls~n~------------l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-  101 (457)
T 3bz5_A           39 EQLATLTSLDCHNSS------------ITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-  101 (457)
T ss_dssp             HHHTTCCEEECCSSC------------CCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred             hHcCCCCEEEccCCC------------cccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-
Confidence            378999999999843            33344 2 478999999999999999886  889999999999999988843 


Q ss_pred             cCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCccc
Q 047733          138 VGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNA  217 (508)
Q Consensus       138 i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  217 (508)
                      ++++++|++|++++|.++.+|  +..+++|++|++++|. +..++   ++.+++|++|+++.|.....            
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~------------  163 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITK------------  163 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCC------------
T ss_pred             cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcccc------------
Confidence            889999999999999998876  8899999999999987 66664   67899999999998854421            


Q ss_pred             chhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccc
Q 047733          218 SLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKG  297 (508)
Q Consensus       218 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~  297 (508)
                        ..++.+++|+.|+++++....++  +..+++|+.|.+..+.....                          ....+++
T Consensus       164 --~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~--------------------------~l~~l~~  213 (457)
T 3bz5_A          164 --LDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL--------------------------DLNQNIQ  213 (457)
T ss_dssp             --CCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC--------------------------CCTTCTT
T ss_pred             --cccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee--------------------------ccccCCC
Confidence              14678899999999999877766  66788888888764431110                          1225689


Q ss_pred             eeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeecc----------Cccccc
Q 047733          298 IKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLR----------DLRNLE  367 (508)
Q Consensus       298 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~----------~c~~l~  367 (508)
                      |+.|++.++ .++.++    ...+++|++|+++++ .++.+         ....+++|+.|.+.          ++..+.
T Consensus       214 L~~L~Ls~N-~l~~ip----~~~l~~L~~L~l~~N-~l~~~---------~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~  278 (457)
T 3bz5_A          214 LTFLDCSSN-KLTEID----VTPLTQLTYFDCSVN-PLTEL---------DVSTLSKLTTLHCIQTDLLEIDLTHNTQLI  278 (457)
T ss_dssp             CSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCC---------CCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred             CCEEECcCC-cccccC----ccccCCCCEEEeeCC-cCCCc---------CHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence            999999876 444432    467899999999985 44433         23356666655544          333222


Q ss_pred             ccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhh
Q 047733          368 KICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDV  421 (508)
Q Consensus       368 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~  421 (508)
                      .+     +...+++|+.|++++|..+..++.     ..++|+.|++++|++|+.
T Consensus       279 ~~-----~~~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~  322 (457)
T 3bz5_A          279 YF-----QAEGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLVY  322 (457)
T ss_dssp             EE-----ECTTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCCE
T ss_pred             cc-----cccccccCCEEECCCCcccceecc-----CCCcceEechhhcccCCE
Confidence            22     224456677777776666555542     234455555554444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=8.4e-23  Score=203.00  Aligned_cols=301  Identities=16%  Similarity=0.187  Sum_probs=233.2

Q ss_pred             CCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-h
Q 047733           38 LKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-S  114 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~  114 (508)
                      +++++++++.++.+..+|..  ..+++|++|++.+|            .+..++...|..+++|++|++++|.++.++ .
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  111 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL------------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  111 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCC------------cccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence            58899999999999999874  38999999999983            344455444689999999999999998765 5


Q ss_pred             hhccCccccEEeccCCCCCC-cc-ccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733          115 SLRLFQNLQTLSLDYCELGD-IA-IVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ  191 (508)
Q Consensus       115 ~~~~l~~L~~L~l~~~~l~~-~~-~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  191 (508)
                      .++++++|++|++++|.++. +. .++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++   +..+++
T Consensus       112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~  187 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPS  187 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTT
T ss_pred             HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccc
Confidence            68999999999999999988 54 4689999999999999998765 458899999999999987 66665   578899


Q ss_pred             CcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCc
Q 047733          192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDI  271 (508)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~  271 (508)
                      |+.|+++++.+.                 .+...++|+.|+++++....++..  ..++|+.|.+..+...         
T Consensus       188 L~~L~l~~n~l~-----------------~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~---------  239 (390)
T 3o6n_A          188 LFHANVSYNLLS-----------------TLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLT---------  239 (390)
T ss_dssp             CSEEECCSSCCS-----------------EEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCC---------
T ss_pred             cceeeccccccc-----------------ccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCc---------
Confidence            999999988664                 234456899999999987666554  3567888877643311         


Q ss_pred             cceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCc
Q 047733          272 SGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTA  351 (508)
Q Consensus       272 ~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  351 (508)
                                      .......+++|++|++.++ .++..... ....+++|++|+++++ .++.+..       ....
T Consensus       240 ----------------~~~~l~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-------~~~~  293 (390)
T 3o6n_A          240 ----------------DTAWLLNYPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-RLVALNL-------YGQP  293 (390)
T ss_dssp             ----------------CCGGGGGCTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECCSS-CCCEEEC-------SSSC
T ss_pred             ----------------ccHHHcCCCCccEEECCCC-cCCCcChh-HccccccCCEEECCCC-cCcccCc-------ccCC
Confidence                            0123346799999999887 44443222 2367899999999995 5665432       2346


Q ss_pred             CcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733          352 FPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ  417 (508)
Q Consensus       352 ~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  417 (508)
                      +|+|+.|+++++ .++.++   .....+++|++|+++++ .++.++    ...+++|+.|++++++
T Consensus       294 l~~L~~L~L~~n-~l~~~~---~~~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          294 IPTLKVLDLSHN-HLLHVE---RNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CTTCCEEECCSS-CCCCCG---GGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred             CCCCCEEECCCC-cceecC---ccccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence            899999999997 455543   23467899999999998 466664    3678999999999865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=8e-23  Score=214.32  Aligned_cols=304  Identities=14%  Similarity=0.191  Sum_probs=221.8

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--c
Q 047733           59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--I  135 (508)
Q Consensus        59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~  135 (508)
                      .+++++.+++.+            +....+|..+|..+++|++|++++|.++.++ ..|+.+++|++|++++|.++.  +
T Consensus        49 ~l~~l~~l~l~~------------~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  116 (597)
T 3oja_B           49 TLNNQKIVTFKN------------STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP  116 (597)
T ss_dssp             GGCCCSEEEESS------------CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCceEEEeeC------------CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH
Confidence            678889999887            4556677777788999999999999998765 478899999999999999887  3


Q ss_pred             cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCC
Q 047733          136 AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEG  214 (508)
Q Consensus       136 ~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  214 (508)
                      ..++++++|++|++++|.+..+|.. +..+++|++|++++|. +..+++..++.+++|++|++++|.+...         
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------  186 (597)
T 3oja_B          117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV---------  186 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC---------
T ss_pred             HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc---------
Confidence            6678999999999999998888866 4789999999999987 6666654478899999999998877521         


Q ss_pred             cccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhc
Q 047733          215 RNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQ  294 (508)
Q Consensus       215 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~  294 (508)
                            .++.+++|+.|+++++....+    ....+|+.|.+..+...                       ..+   ...
T Consensus       187 ------~~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~-----------------------~~~---~~~  230 (597)
T 3oja_B          187 ------DLSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSIN-----------------------VVR---GPV  230 (597)
T ss_dssp             ------CGGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCC-----------------------EEE---CSC
T ss_pred             ------ChhhhhhhhhhhcccCccccc----cCCchhheeeccCCccc-----------------------ccc---ccc
Confidence                  255677889999888764433    23456676666533210                       000   112


Q ss_pred             ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcc
Q 047733          295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPL  374 (508)
Q Consensus       295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~  374 (508)
                      +++|+.|++.++. ++..   .....+++|++|+++++ .++.+..  .    ....+++|+.|.++++ .++.++   .
T Consensus       231 ~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~--~----~~~~l~~L~~L~Ls~N-~l~~l~---~  295 (597)
T 3oja_B          231 NVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYN-ELEKIMY--H----PFVKMQRLERLYISNN-RLVALN---L  295 (597)
T ss_dssp             CSCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-CCCEEES--G----GGTTCSSCCEEECTTS-CCCEEE---C
T ss_pred             CCCCCEEECCCCC-CCCC---hhhccCCCCCEEECCCC-ccCCCCH--H----HhcCccCCCEEECCCC-CCCCCC---c
Confidence            4689999998763 4433   22356899999999985 4544321  1    2346789999999985 455543   2


Q ss_pred             cccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCc
Q 047733          375 AAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLP  453 (508)
Q Consensus       375 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  453 (508)
                      ....+|+|+.|++++| .+..+|.  .+..+++|+.|++++++ +..+              .+..+++|+.|++++++
T Consensus       296 ~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~--------------~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          296 YGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTL--------------KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             SSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCC--------------CCCTTCCCSEEECCSSC
T ss_pred             ccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCc--------------ChhhcCCCCEEEeeCCC
Confidence            3356899999999997 5666654  24778999999999875 3322              24458899999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=8.2e-24  Score=222.16  Aligned_cols=401  Identities=13%  Similarity=0.046  Sum_probs=242.0

Q ss_pred             CCcccEEEeecCCC----CCCCCC------------C-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCC-c
Q 047733           38 LKVCTAISLKNSNI----SELPQV------------F-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRE-L   99 (508)
Q Consensus        38 ~~~lr~L~l~~~~~----~~l~~~------------~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L   99 (508)
                      ++++++|++.++..    ..+|..            . .+++|++|++.+|           ......+..+...+++ |
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-----------~i~~~~~~~l~~~~~~~L  140 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-----------IVSDLDLDRLAKARADDL  140 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-----------BCCHHHHHHHHHHHGGGC
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-----------EecHHHHHHHHHhccccC
Confidence            56689999987543    112211            1 5788999999883           1111222222122334 8


Q ss_pred             cEEEecCCc-CC--CCchhhccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch-----hhHHHhccCC
Q 047733          100 RVLDFARMH-LL--PLPSSLRLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME-----KLVEEIGQLT  165 (508)
Q Consensus       100 ~~L~l~~~~-~~--~l~~~~~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~-----~lp~~~~~l~  165 (508)
                      ++|++++|. ++  .++....++++|++|++++|.+++  .    .....+++|++|+++++.+.     .++..+.+++
T Consensus       141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~  220 (592)
T 3ogk_B          141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR  220 (592)
T ss_dssp             CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred             cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence            899998886 22  244445578889999998887654  1    23456788999999888664     6666677888


Q ss_pred             CCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCC
Q 047733          166 HLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDL  245 (508)
Q Consensus       166 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l  245 (508)
                      +|++|++++|. +..++.. +..+++|++|.+........         .......+..+++|+.|++.+.....++..+
T Consensus       221 ~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~~---------~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~  289 (592)
T 3ogk_B          221 SLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNEDIG---------MPEKYMNLVFPRKLCRLGLSYMGPNEMPILF  289 (592)
T ss_dssp             TCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCCTT---------CTTSSSCCCCCTTCCEEEETTCCTTTGGGGG
T ss_pred             CCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccccccccc---------hHHHHHHhhccccccccCccccchhHHHHHH
Confidence            99999998876 5556654 78888999998875332211         1123355677788888888776666677777


Q ss_pred             ccCCCccEEEEEecCcccCCC---CCCCccceeeEEeccCccccccchhhhcccceeEEEecC----------CCCcccc
Q 047733          246 SFFKMLQRYSILIGDQWAWDS---PSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGG----------SLDMKSV  312 (508)
Q Consensus       246 ~~~~~L~~L~i~~~~~~~~~~---~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~  312 (508)
                      ..+++|+.|.+..+. .++..   ....+++|+.+.+...............+++|++|++.+          |..+++.
T Consensus       290 ~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~  368 (592)
T 3ogk_B          290 PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR  368 (592)
T ss_dssp             GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred             hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence            778888888887655 22211   124455676666662111111122234578889998884          6666654


Q ss_pred             ccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccC---cccccccccC---cccccccccCCeEE
Q 047733          313 LYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRD---LRNLEKICRG---PLAAESFCQLRDMR  386 (508)
Q Consensus       313 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~---c~~l~~~~~~---~~~~~~~~~L~~L~  386 (508)
                      ........+++|++|.+ .|..++.-  ... .  -...+++|+.|++.+   |+.++..+..   ......+++|++|+
T Consensus       369 ~~~~l~~~~~~L~~L~l-~~~~l~~~--~~~-~--l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~  442 (592)
T 3ogk_B          369 GLIALAQGCQELEYMAV-YVSDITNE--SLE-S--IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA  442 (592)
T ss_dssp             HHHHHHHHCTTCSEEEE-EESCCCHH--HHH-H--HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHhhCccCeEEEe-ecCCccHH--HHH-H--HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence            32222245788888888 33444321  000 0  011367888888874   4455442100   00123478888888


Q ss_pred             EcCCCC-cceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCcccc
Q 047733          387 VNGCDK-LKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHF  465 (508)
Q Consensus       387 l~~c~~-l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~  465 (508)
                      ++.|.. +.+.....+...+++|++|++++|+ +.+...          ...+..+++|++|++++|+ +++........
T Consensus       443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~----------~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~  510 (592)
T 3ogk_B          443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL----------MEFSRGCPNLQKLEMRGCC-FSERAIAAAVT  510 (592)
T ss_dssp             EECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH----------HHHHTCCTTCCEEEEESCC-CBHHHHHHHHH
T ss_pred             EecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH----------HHHHhcCcccCeeeccCCC-CcHHHHHHHHH
Confidence            877764 3433232334557888888888775 332111          1122346888888888886 55443333333


Q ss_pred             ccCCccEEEEeeCC
Q 047733          466 EFPSLEKLRILECP  479 (508)
Q Consensus       466 ~~p~L~~L~i~~C~  479 (508)
                      .+|+|+.|++++|+
T Consensus       511 ~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          511 KLPSLRYLWVQGYR  524 (592)
T ss_dssp             HCSSCCEEEEESCB
T ss_pred             hcCccCeeECcCCc
Confidence            56888888888886

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=4e-22  Score=201.33  Aligned_cols=35  Identities=14%  Similarity=0.037  Sum_probs=9.0

Q ss_pred             CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCC
Q 047733           38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDP   72 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~   72 (508)
                      .+.+++|++++|.++.+|... .+++|++|++++|.
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~   45 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE   45 (454)
T ss_dssp             ------------------------CCHHHHHHHHHH
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCc
Confidence            356888888888887777543 78888888887743

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=5.1e-21  Score=195.37  Aligned_cols=154  Identities=21%  Similarity=0.267  Sum_probs=76.9

Q ss_pred             CCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch
Q 047733           37 ALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS  114 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  114 (508)
                      ++++++.|++++|.+.+++.  +..+++|++|++.+|            .+..++...|.++++|++|++++|.++.+|.
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   97 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN------------IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL   97 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred             CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC------------ccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence            34455555555555544432  225555555555552            2222222223555555555555555555443


Q ss_pred             -hhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733          115 -SLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLS  190 (508)
Q Consensus       115 -~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  190 (508)
                       .|.++++|++|++++|.++.  +..+.++++|++|++++|.+..++ ..+..+++|++|++++|. +..++...+..++
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~  176 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLH  176 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCT
T ss_pred             ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccC
Confidence             34555555555555555544  344555555555555555554332 334455555555555554 4444443345555


Q ss_pred             CCcEEEeecCCCc
Q 047733          191 QLEELYIGESPIM  203 (508)
Q Consensus       191 ~L~~L~l~~~~~~  203 (508)
                      +|+.|++.+|.+.
T Consensus       177 ~L~~L~l~~n~i~  189 (477)
T 2id5_A          177 GLIVLRLRHLNIN  189 (477)
T ss_dssp             TCCEEEEESCCCC
T ss_pred             CCcEEeCCCCcCc
Confidence            5555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.2e-21  Score=205.46  Aligned_cols=301  Identities=16%  Similarity=0.190  Sum_probs=232.0

Q ss_pred             CCcccEEEeecCCCCCCCCCC--CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-h
Q 047733           38 LKVCTAISLKNSNISELPQVF--ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-S  114 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~  114 (508)
                      ..+++.+++.++.+..+|...  .+++|++|++.+|            .+..++...|..+++|++|++++|.++.++ .
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  117 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL------------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  117 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC------------CCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence            577899999999999998743  8999999999993            334444444689999999999999998776 4


Q ss_pred             hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733          115 SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ  191 (508)
Q Consensus       115 ~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  191 (508)
                      .|+.+++|++|++++|.++. | ..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++   ++.+++
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~  193 (597)
T 3oja_B          118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPS  193 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTT
T ss_pred             HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhh
Confidence            57999999999999999988 5 44689999999999999988665 468899999999999987 66665   467899


Q ss_pred             CcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCc
Q 047733          192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDI  271 (508)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~  271 (508)
                      |+.|++++|.+.                 .+...++|+.|+++++....++...  .++|+.|.+..+...         
T Consensus       194 L~~L~l~~n~l~-----------------~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~---------  245 (597)
T 3oja_B          194 LFHANVSYNLLS-----------------TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT---------  245 (597)
T ss_dssp             CSEEECCSSCCS-----------------EEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCC---------
T ss_pred             hhhhhcccCccc-----------------cccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCC---------
Confidence            999999988664                 2345568999999999876666543  467787777543311         


Q ss_pred             cceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCc
Q 047733          272 SGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTA  351 (508)
Q Consensus       272 ~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~  351 (508)
                                      .......+++|+.|++.++. ++...+. ....+++|++|+++++ .++.+..       ....
T Consensus       246 ----------------~~~~l~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~-------~~~~  299 (597)
T 3oja_B          246 ----------------DTAWLLNYPGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNN-RLVALNL-------YGQP  299 (597)
T ss_dssp             ----------------CCGGGGGCTTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECTTS-CCCEEEC-------SSSC
T ss_pred             ----------------CChhhccCCCCCEEECCCCc-cCCCCHH-HhcCccCCCEEECCCC-CCCCCCc-------cccc
Confidence                            11233468899999998864 4444322 2367899999999985 5665432       2345


Q ss_pred             CcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733          352 FPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ  417 (508)
Q Consensus       352 ~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  417 (508)
                      +|+|+.|+++++. ++.++   .....+++|+.|++++| .+..++    ...+++|+.|++++++
T Consensus       300 l~~L~~L~Ls~N~-l~~i~---~~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          300 IPTLKVLDLSHNH-LLHVE---RNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CTTCCEEECCSSC-CCCCG---GGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred             CCCCcEEECCCCC-CCccC---cccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence            8999999999974 44443   23467899999999998 466654    3678999999999866

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.88  E-value=2.1e-21  Score=198.24  Aligned_cols=313  Identities=14%  Similarity=0.129  Sum_probs=236.6

Q ss_pred             ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccC
Q 047733           41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLF  119 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l  119 (508)
                      -+.++..++.+..+|... .++++.|++.+|            .+..++...|.++++|++|++++|.++.+ |..|.++
T Consensus        13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l   79 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKN------------RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL   79 (477)
T ss_dssp             TTEEECCSCCCSSCCSCC-CTTCSEEECCSS------------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCEEEeCCCCcCcCCCCC-CCCCcEEECCCC------------ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC
Confidence            356777788888888643 468999999994            34444444468999999999999999865 6789999


Q ss_pred             ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733          120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY  196 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  196 (508)
                      ++|++|++++|.++. + ..++++++|++|++++|.+..+ +..+..+++|++|++++|. +..++...+..+++|++|+
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEE
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEE
Confidence            999999999999888 5 5688999999999999988855 4568899999999999987 6666654488999999999


Q ss_pred             eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC-CCccCCCccEEEEEecCcccC-CCCCCCccce
Q 047733          197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR-DLSFFKMLQRYSILIGDQWAW-DSPSDDISGI  274 (508)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~-~~~~~~~~~l  274 (508)
                      +++|.+...            ....+..+++|+.|++.++.....+. .+..+++|+.|.+..+..... ........+|
T Consensus       159 l~~n~l~~~------------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          159 LEKCNLTSI------------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             EESCCCSSC------------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             CCCCcCccc------------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence            999987622            22457889999999999988655544 567899999999987654322 1222223367


Q ss_pred             eeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcC
Q 047733          275 FQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPV  354 (508)
Q Consensus       275 ~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~  354 (508)
                      +.+.+..+.....+......+++|+.|++.++. ++.+... ....+++|++|++.++ .++.+..  .    ....+++
T Consensus       227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~--~----~~~~l~~  297 (477)
T 2id5_A          227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGS-MLHELLRLQEIQLVGG-QLAVVEP--Y----AFRGLNY  297 (477)
T ss_dssp             SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTT-SCTTCTTCCEEECCSS-CCSEECT--T----TBTTCTT
T ss_pred             cEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChh-hccccccCCEEECCCC-ccceECH--H----HhcCccc
Confidence            778887765555555556678999999998874 4544332 2367899999999985 4554321  1    3346799


Q ss_pred             cceeeccCcccccccccCcccccccccCCeEEEcCCC
Q 047733          355 LESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCD  391 (508)
Q Consensus       355 L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~  391 (508)
                      |+.|+++++ .++.++..  ....+++|++|++.+.+
T Consensus       298 L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          298 LRVLNVSGN-QLTTLEES--VFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CCEEECCSS-CCSCCCGG--GBSCGGGCCEEECCSSC
T ss_pred             CCEEECCCC-cCceeCHh--HcCCCcccCEEEccCCC
Confidence            999999996 45555322  23568999999999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=7.2e-21  Score=192.13  Aligned_cols=296  Identities=18%  Similarity=0.150  Sum_probs=146.8

Q ss_pred             ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCc
Q 047733           41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ  120 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  120 (508)
                      +++|++++|.+.++|..  .++|++|++++|....            +|.    .+.+|++|++++|.++.++...   +
T Consensus        73 l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~------------lp~----~~~~L~~L~l~~n~l~~l~~~~---~  131 (454)
T 1jl5_A           73 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTE------------LPE----LPQSLKSLLVDNNNLKALSDLP---P  131 (454)
T ss_dssp             CSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSS------------CCC----CCTTCCEEECCSSCCSCCCSCC---T
T ss_pred             CCEEEecCCccccCCCC--cCCCCEEEccCCcCCc------------ccc----ccCCCcEEECCCCccCcccCCC---C
Confidence            35555555555555542  3455666665532222            221    1255666666666655544211   4


Q ss_pred             cccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecC
Q 047733          121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGES  200 (508)
Q Consensus       121 ~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  200 (508)
                      +|++|++++|.++..+.++++++|++|++++|.++.+|..   ..+|++|++++|. +..+|.  ++.+++|++|++++|
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNN  205 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCC
Confidence            5666666666655522466666666666666665555432   2356666666654 444552  456666666666665


Q ss_pred             CCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEec
Q 047733          201 PIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVA  280 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~  280 (508)
                      .+....             .   ..++|+.|+++++....+|. +..+++|+.|.+..+......   ....+++.+.+.
T Consensus       206 ~l~~l~-------------~---~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~---~~~~~L~~L~l~  265 (454)
T 1jl5_A          206 SLKKLP-------------D---LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP---DLPPSLEALNVR  265 (454)
T ss_dssp             CCSSCC-------------C---CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCC---SCCTTCCEEECC
T ss_pred             cCCcCC-------------C---CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccc---ccccccCEEECC
Confidence            544110             0   01356666666665545542 455566666655543221111   112334334443


Q ss_pred             cCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeec
Q 047733          281 SGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFL  360 (508)
Q Consensus       281 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l  360 (508)
                      .+.....+    ..+++|++|++.++. ++.+..     ..++|++|+++++ .++.+.          ...++|+.|++
T Consensus       266 ~N~l~~l~----~~~~~L~~L~ls~N~-l~~l~~-----~~~~L~~L~l~~N-~l~~i~----------~~~~~L~~L~L  324 (454)
T 1jl5_A          266 DNYLTDLP----ELPQSLTFLDVSENI-FSGLSE-----LPPNLYYLNASSN-EIRSLC----------DLPPSLEELNV  324 (454)
T ss_dssp             SSCCSCCC----CCCTTCCEEECCSSC-CSEESC-----CCTTCCEEECCSS-CCSEEC----------CCCTTCCEEEC
T ss_pred             CCcccccC----cccCcCCEEECcCCc-cCcccC-----cCCcCCEEECcCC-cCCccc----------CCcCcCCEEEC
Confidence            33211111    123566666665542 333211     1256666666654 333221          01136677777


Q ss_pred             cCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733          361 RDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ  417 (508)
Q Consensus       361 ~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  417 (508)
                      +++ .++.++      ..+++|++|++++| .++.+|.     .+++|++|++++++
T Consensus       325 s~N-~l~~lp------~~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          325 SNN-KLIELP------ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP  368 (454)
T ss_dssp             CSS-CCSCCC------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred             CCC-cccccc------ccCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC
Confidence            664 233322      12466777777665 4555543     35667777776643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=8.7e-21  Score=200.67  Aligned_cols=146  Identities=22%  Similarity=0.339  Sum_probs=118.6

Q ss_pred             EEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccc
Q 047733           44 ISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNL  122 (508)
Q Consensus        44 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L  122 (508)
                      .+=++..+..+|... -+++++|++++|            .+..++...|.++++|++|++++|.++.++ ..|.++++|
T Consensus        36 ~~c~~~~l~~vP~~l-p~~~~~LdLs~N------------~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L  102 (635)
T 4g8a_A           36 YQCMELNFYKIPDNL-PFSTKNLDLSFN------------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL  102 (635)
T ss_dssp             EECTTSCCSSCCSSS-CTTCCEEECTTS------------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             EECCCCCcCccCCCC-CcCCCEEEeeCC------------CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCC
Confidence            333344556777532 148999999994            445555555799999999999999999876 468999999


Q ss_pred             cEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCc--cChhhhhcCCCCcEEEe
Q 047733          123 QTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKV--IPPNVISSLSQLEELYI  197 (508)
Q Consensus       123 ~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l  197 (508)
                      ++|++++|+++. + ..+.++.+|++|++++|.++.+|. .++++++|++|++++|. +..  .|.. ++.+++|++|++
T Consensus       103 ~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L  180 (635)
T 4g8a_A          103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDL  180 (635)
T ss_dssp             CEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEEC
T ss_pred             CEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcc
Confidence            999999999988 5 678999999999999999998875 47899999999999987 544  3444 789999999999


Q ss_pred             ecCCCcc
Q 047733          198 GESPIMW  204 (508)
Q Consensus       198 ~~~~~~~  204 (508)
                      ++|.+..
T Consensus       181 ~~N~l~~  187 (635)
T 4g8a_A          181 SSNKIQS  187 (635)
T ss_dssp             CSSCCCE
T ss_pred             cCccccc
Confidence            9987754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.86  E-value=1.2e-23  Score=220.92  Aligned_cols=404  Identities=15%  Similarity=0.091  Sum_probs=215.1

Q ss_pred             CCcccEEEeecCCC-CCC---CC------------CC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCcc
Q 047733           38 LKVCTAISLKNSNI-SEL---PQ------------VF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELR  100 (508)
Q Consensus        38 ~~~lr~L~l~~~~~-~~l---~~------------~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  100 (508)
                      ++++++|++.++.. .++   +.            +. .+++|+.|++.++           ......+..+...+++|+
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-----------~~~~~~~~~l~~~~~~L~  133 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-----------VVTDDCLELIAKSFKNFK  133 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-----------BCCHHHHHHHHHHCTTCC
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-----------EEcHHHHHHHHHhCCCCc
Confidence            57799999998753 211   11            11 6789999999882           222223334434689999


Q ss_pred             EEEecCC-cCCC--CchhhccCccccEEeccCCCCCC--cccc----CCCCCCcEEEccCCC--ch--hhHHHhccCCCC
Q 047733          101 VLDFARM-HLLP--LPSSLRLFQNLQTLSLDYCELGD--IAIV----GDLKTLVILTLRGSD--ME--KLVEEIGQLTHL  167 (508)
Q Consensus       101 ~L~l~~~-~~~~--l~~~~~~l~~L~~L~l~~~~l~~--~~~i----~~l~~L~~L~l~~~~--i~--~lp~~~~~l~~L  167 (508)
                      +|++++| .++.  ++..+.++++|++|++++|.+++  +..+    ..+++|++|+++++.  +.  .++..+.++++|
T Consensus       134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L  213 (594)
T 2p1m_B          134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL  213 (594)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred             EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence            9999998 5543  55656689999999999998664  2333    367799999999885  32  455555678999


Q ss_pred             ceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEE-EEecccCccCCCCCc
Q 047733          168 RLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSL-EILIEDEKTLPRDLS  246 (508)
Q Consensus       168 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~l~  246 (508)
                      ++|++++|..+..++.. +..+++|++|.+..+.....      ......+...+..+++|+.+ .+.......++..+.
T Consensus       214 ~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~------~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~  286 (594)
T 2p1m_B          214 KSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVR------PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS  286 (594)
T ss_dssp             CEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCC------HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred             cEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccc------hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence            99999988656665554 77889999998766532100      00011123345556666665 232222333333334


Q ss_pred             cCCCccEEEEEecCcccCC---CCCCCccceeeEEeccCccccccchhhhcccceeEEEecC--------CCCccccccC
Q 047733          247 FFKMLQRYSILIGDQWAWD---SPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGG--------SLDMKSVLYG  315 (508)
Q Consensus       247 ~~~~L~~L~i~~~~~~~~~---~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~~~~~~~~  315 (508)
                      .+++|+.|.+..+. .+..   .....+++|+.+.+..+............+++|++|++.+        +..+++....
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            45566666655443 1110   0112233444444443311000111222466777777733        3333332211


Q ss_pred             CcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeecc-----CcccccccccC---cccccccccCCeEEE
Q 047733          316 SHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLR-----DLRNLEKICRG---PLAAESFCQLRDMRV  387 (508)
Q Consensus       316 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~-----~c~~l~~~~~~---~~~~~~~~~L~~L~l  387 (508)
                      ....++++|++|.+. |..++...  .. .  ....+|+|+.|++.     +|..++..+..   ......+++|++|++
T Consensus       366 ~l~~~~~~L~~L~~~-~~~l~~~~--~~-~--l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L  439 (594)
T 2p1m_B          366 SVSMGCPKLESVLYF-CRQMTNAA--LI-T--IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL  439 (594)
T ss_dssp             HHHHHCTTCCEEEEE-ESCCCHHH--HH-H--HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHhchhHHHHHHh-cCCcCHHH--HH-H--HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence            111235677777443 34333210  00 0  01135677777776     45555432100   000234566777777


Q ss_pred             cCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCcccccc
Q 047733          388 NGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEF  467 (508)
Q Consensus       388 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~  467 (508)
                      ++  .+.+.....+...+++|++|++++|. +.+....          .-...+++|++|++++|+. ++.........+
T Consensus       440 ~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l  505 (594)
T 2p1m_B          440 SG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKL  505 (594)
T ss_dssp             CS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGG
T ss_pred             cC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHH----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhC
Confidence            55  44443322233346677777776665 2221110          0012367777777777753 433322233345


Q ss_pred             CCccEEEEeeCCC
Q 047733          468 PSLEKLRILECPQ  480 (508)
Q Consensus       468 p~L~~L~i~~C~~  480 (508)
                      ++|+.|++++|+.
T Consensus       506 ~~L~~L~l~~~~~  518 (594)
T 2p1m_B          506 ETMRSLWMSSCSV  518 (594)
T ss_dssp             GGSSEEEEESSCC
T ss_pred             CCCCEEeeeCCCC
Confidence            7777777777765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=3.5e-23  Score=217.35  Aligned_cols=402  Identities=11%  Similarity=0.008  Sum_probs=253.3

Q ss_pred             CCCcccEEEeecCCCCCC--CCCCC-CCC-CcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-
Q 047733           37 ALKVCTAISLKNSNISEL--PQVFE-CPQ-LKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-  111 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l--~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-  111 (508)
                      ..+++++|++++|.+.+.  ..+.. +++ |++|++.++.          .........+..++++|++|++++|.+.. 
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~----------~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~  179 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS----------GFTTDGLLSIVTHCRKIKTLLMEESSFSEK  179 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE----------EEEHHHHHHHHHHCTTCSEEECTTCEEECC
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC----------CcCHHHHHHHHhhCCCCCEEECccccccCc
Confidence            357899999999977432  22222 455 9999998821          01111112233588999999999998753 


Q ss_pred             ----CchhhccCccccEEeccCCCCCC------ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCC---
Q 047733          112 ----LPSSLRLFQNLQTLSLDYCELGD------IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNL---  178 (508)
Q Consensus       112 ----l~~~~~~l~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~---  178 (508)
                          ++.....+++|++|++++|.++.      +..+.++++|++|+++++.+..+|..+..+++|++|+++.....   
T Consensus       180 ~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~  259 (592)
T 3ogk_B          180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM  259 (592)
T ss_dssp             CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred             chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccch
Confidence                34456688999999999998762      24566789999999999999999988999999999999853322   


Q ss_pred             CccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCc--cCCCCCccCCCccEEEE
Q 047733          179 KVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEK--TLPRDLSFFKMLQRYSI  256 (508)
Q Consensus       179 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~i  256 (508)
                      ...... +..+++|+.|.+..+...             .++..+..+++|+.|+++++...  .+...+..+++|+.|.+
T Consensus       260 ~~~~~~-l~~~~~L~~L~l~~~~~~-------------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L  325 (592)
T 3ogk_B          260 PEKYMN-LVFPRKLCRLGLSYMGPN-------------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET  325 (592)
T ss_dssp             TTSSSC-CCCCTTCCEEEETTCCTT-------------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred             HHHHHH-hhccccccccCccccchh-------------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence            112222 566777888877654221             23344556677888888776621  11122356777888777


Q ss_pred             EecCccc-CCCCCCCccceeeEEecc----------Cccccc--cchhhhcccceeEEEecCCCCccccccCCcCCCCCC
Q 047733          257 LIGDQWA-WDSPSDDISGIFQLTVAS----------GANICL--NGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQ  323 (508)
Q Consensus       257 ~~~~~~~-~~~~~~~~~~l~~l~L~~----------~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  323 (508)
                      ..+.... .......+++|+.+.+..          +..+..  .......+++|++|++ .+..+++.........+++
T Consensus       326 ~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~  404 (592)
T 3ogk_B          326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKN  404 (592)
T ss_dssp             EGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCS
T ss_pred             cCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCC
Confidence            6211100 011112234566666663          222221  1122345899999999 5566665433222234899


Q ss_pred             CcEEEEec---CCCceeeeecccCCCCCCCcCcCcceeeccCccc-ccccccCcccccccccCCeEEEcCCCCcceecch
Q 047733          324 LKHLEVVE---NSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRN-LEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPL  399 (508)
Q Consensus       324 L~~L~l~~---~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  399 (508)
                      |++|++..   |+.++..+.+..... ....+++|+.|.++.|.. ++......+ ...+++|++|++++|. +.+....
T Consensus       405 L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~  481 (592)
T 3ogk_B          405 LCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVG-ESDEGLM  481 (592)
T ss_dssp             CCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCC-SSHHHHH
T ss_pred             CcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCC-CCHHHHH
Confidence            99999985   445443210000000 123589999999988764 332211111 1347999999999884 6553333


Q ss_pred             hhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeC
Q 047733          400 VIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILEC  478 (508)
Q Consensus       400 ~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C  478 (508)
                      .+...+++|++|++++|+ +.+...          ......+++|++|++++|+ +++.....+...+|.++...+...
T Consensus       482 ~~~~~~~~L~~L~l~~n~-l~~~~~----------~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCC-FSERAI----------AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             HHHTCCTTCCEEEEESCC-CBHHHH----------HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHhcCcccCeeeccCCC-CcHHHH----------HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence            456789999999999998 443221          1122458999999999996 877766666667788877766654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=4.4e-20  Score=179.15  Aligned_cols=122  Identities=13%  Similarity=0.257  Sum_probs=56.2

Q ss_pred             cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhcc
Q 047733           40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRL  118 (508)
Q Consensus        40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~  118 (508)
                      +++.++++++.+..+|... .++|++|++.+|            .+..++...|.++++|++|++++|.++.+ |..+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  100 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN------------DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP  100 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSS------------CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCC------------cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC
Confidence            3455555555554444322 245555555542            12222222234455555555555555433 344555


Q ss_pred             CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCC
Q 047733          119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCF  176 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~  176 (508)
                      +++|++|++++|.++. |..+.  ++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus       101 l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          101 LRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             CTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred             cCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence            5555555555555444 33222  455555555555444432 24445555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=3.2e-20  Score=179.46  Aligned_cols=90  Identities=22%  Similarity=0.315  Sum_probs=76.5

Q ss_pred             CCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEecc
Q 047733           95 GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS  173 (508)
Q Consensus        95 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~  173 (508)
                      ...+++.|+++++.++.+|..+.++++|++|++++|.++. |..++++++|++|++++|.++.+|..+.++++|++|+++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            4578999999999998888888889999999999998877 777888899999999998888888888888889999888


Q ss_pred             CCCCCCccChh
Q 047733          174 NCFNLKVIPPN  184 (508)
Q Consensus       174 ~~~~~~~~~~~  184 (508)
                      +|...+.+|..
T Consensus       159 ~n~~~~~~p~~  169 (328)
T 4fcg_A          159 ACPELTELPEP  169 (328)
T ss_dssp             EETTCCCCCSC
T ss_pred             CCCCccccChh
Confidence            87767777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=2.2e-19  Score=174.06  Aligned_cols=187  Identities=17%  Similarity=0.244  Sum_probs=120.7

Q ss_pred             cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhcc
Q 047733           40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRL  118 (508)
Q Consensus        40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~  118 (508)
                      +++.++++++.+..+|... .+++++|++.+|            .+..++...|.++++|++|++++|.++.+ |..+..
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN------------KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP   98 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSS------------CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCC------------cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC
Confidence            5777788777777777533 367788888773            33334443357778888888888877765 667777


Q ss_pred             CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCc--cChhhhhcCCCCcE
Q 047733          119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKV--IPPNVISSLSQLEE  194 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~  194 (508)
                      +++|++|++++|.++. |..+.  ++|++|++++|.+..++ ..+.++++|++|++++|. +..  .....+..+++|++
T Consensus        99 l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A           99 LVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSY  175 (330)
T ss_dssp             CTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCE
T ss_pred             CCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCE
Confidence            8888888888877766 44443  67888888887777554 346777788888887766 322  22223667777777


Q ss_pred             EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEE
Q 047733          195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSIL  257 (508)
Q Consensus       195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~  257 (508)
                      |++++|.+...             +..+.  ++|+.|+++++..... +..+..+++|+.|.+.
T Consensus       176 L~l~~n~l~~l-------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  224 (330)
T 1xku_A          176 IRIADTNITTI-------------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS  224 (330)
T ss_dssp             EECCSSCCCSC-------------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred             EECCCCccccC-------------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            77777766521             11111  5677777777664443 3344556666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=6.7e-20  Score=177.22  Aligned_cols=189  Identities=23%  Similarity=0.304  Sum_probs=143.0

Q ss_pred             CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      .++++.|++++|.+..+|... .+++|++|++.+|.            +..+|..+ .++++|++|++++|.++.+|..+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~------------l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l  146 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG------------LMELPDTM-QQFAGLETLTLARNPLRALPASI  146 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC------------CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGG
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC------------ccchhHHH-hccCCCCEEECCCCccccCcHHH
Confidence            367999999999998887644 88999999998833            33555544 78899999999999998889889


Q ss_pred             ccCccccEEeccCCCCC-C-ccccC---------CCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhh
Q 047733          117 RLFQNLQTLSLDYCELG-D-IAIVG---------DLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNV  185 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~-~-~~~i~---------~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~  185 (508)
                      +++++|++|++++|.+. . |..++         .+++|++|++++|.++.+|..+..+++|++|++++|. +..++.. 
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-  224 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-  224 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-
T ss_pred             hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-
Confidence            99999999999998744 3 55544         3888899999888888888888888888888888877 6677775 


Q ss_pred             hhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc-CccCCCCCccCCCccE
Q 047733          186 ISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED-EKTLPRDLSFFKMLQR  253 (508)
Q Consensus       186 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~  253 (508)
                      +..+++|++|++++|.+...            ++..++.+++|+.|++++|. .+.+|..+..+++|+.
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~------------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~  281 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRN------------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK  281 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCB------------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred             hccCCCCCEEECcCCcchhh------------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence            78888888888888776533            23456777788888887765 4444444433333333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=4.5e-19  Score=171.87  Aligned_cols=268  Identities=15%  Similarity=0.194  Sum_probs=195.5

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      ...++++.|++++|.+.+++.  +..+++|++|++.+|.            +..++...|..+++|++|++++|.++.+|
T Consensus        49 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~  116 (330)
T 1xku_A           49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK------------ISKISPGAFAPLVKLERLYLSKNQLKELP  116 (330)
T ss_dssp             SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC------------CCCBCTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred             cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc------------CCeeCHHHhcCCCCCCEEECCCCcCCccC
Confidence            356789999999999988875  4489999999999943            33333333588999999999999999888


Q ss_pred             hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCch---hhHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733          114 SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDME---KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS  188 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  188 (508)
                      ..+.  ++|++|++++|.++. + ..+.++++|++|++++|.+.   ..+..+..+++|++|++++|. +..+|.. +  
T Consensus       117 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~-~--  190 (330)
T 1xku_A          117 EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG-L--  190 (330)
T ss_dssp             SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS-C--
T ss_pred             hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc-c--
Confidence            7654  799999999999887 4 67899999999999999876   335668899999999999987 7778764 2  


Q ss_pred             CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC-CCccCCCccEEEEEecCcccCCCC
Q 047733          189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR-DLSFFKMLQRYSILIGDQWAWDSP  267 (508)
Q Consensus       189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~  267 (508)
                      .++|++|++++|.+...            .+..+..+++|+.|+++++.....+. .+..+++|+.|.+..+.....   
T Consensus       191 ~~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l---  255 (330)
T 1xku_A          191 PPSLTELHLDGNKITKV------------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV---  255 (330)
T ss_dssp             CTTCSEEECTTSCCCEE------------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC---
T ss_pred             cccCCEEECCCCcCCcc------------CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC---
Confidence            38999999999987632            23568889999999999998666554 667889999998875542111   


Q ss_pred             CCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcC-----CCCCCCcEEEEecCCCceeeeecc
Q 047733          268 SDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHG-----EGFPQLKHLEVVENSNLLCVVDTV  342 (508)
Q Consensus       268 ~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~l~~i~~~~  342 (508)
                                          +. ....+++|++|++.++ .++.+......     ...+.|+.+++.+++ +.......
T Consensus       256 --------------------p~-~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~  312 (330)
T 1xku_A          256 --------------------PG-GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQP  312 (330)
T ss_dssp             --------------------CT-TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCG
T ss_pred             --------------------Ch-hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc-ccccccCc
Confidence                                11 1235688999999876 44444322211     235788999998865 33211111


Q ss_pred             cCCCCCCCcCcCcceeeccCc
Q 047733          343 DRATAPTTAFPVLESLFLRDL  363 (508)
Q Consensus       343 ~~~~~~~~~~p~L~~L~l~~c  363 (508)
                      .    ...++++|+.++++++
T Consensus       313 ~----~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          313 S----TFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             G----GGTTCCCGGGEEC---
T ss_pred             c----ccccccceeEEEeccc
Confidence            1    2235677888888764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=4.7e-19  Score=171.89  Aligned_cols=268  Identities=19%  Similarity=0.250  Sum_probs=194.7

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      ...++++.|++++|.+.++++  +..+++|++|++.+|            .+..++...|.++++|++|++++|.++.+|
T Consensus        51 ~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~  118 (332)
T 2ft3_A           51 EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN------------KISKIHEKAFSPLRKLQKLYISKNHLVEIP  118 (332)
T ss_dssp             CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS------------CCCEECGGGSTTCTTCCEEECCSSCCCSCC
T ss_pred             CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC------------ccCccCHhHhhCcCCCCEEECCCCcCCccC
Confidence            456789999999999987754  449999999999983            334444444589999999999999999888


Q ss_pred             hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchh---hHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733          114 SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEK---LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS  188 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  188 (508)
                      ..+.  ++|++|++++|.++. + ..+..+++|++|++++|.++.   .+..+..+ +|++|++++|. +..+|.. +  
T Consensus       119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~-~--  191 (332)
T 2ft3_A          119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKD-L--  191 (332)
T ss_dssp             SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSS-S--
T ss_pred             cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcc-c--
Confidence            7665  899999999999887 4 568999999999999998863   34455666 99999999987 7778764 2  


Q ss_pred             CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC-CCccCCCccEEEEEecCcccCCCC
Q 047733          189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR-DLSFFKMLQRYSILIGDQWAWDSP  267 (508)
Q Consensus       189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~  267 (508)
                      .++|++|++++|.+....            +..+..+++|+.|+++++.....+. .+..+++|+.|.+..+....    
T Consensus       192 ~~~L~~L~l~~n~i~~~~------------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----  255 (332)
T 2ft3_A          192 PETLNELHLDHNKIQAIE------------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR----  255 (332)
T ss_dssp             CSSCSCCBCCSSCCCCCC------------TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB----
T ss_pred             cCCCCEEECCCCcCCccC------------HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee----
Confidence            378999999999876322            2467888999999999998666655 56788999988886543211    


Q ss_pred             CCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcC-----CCCCCCcEEEEecCCCceeeeecc
Q 047733          268 SDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHG-----EGFPQLKHLEVVENSNLLCVVDTV  342 (508)
Q Consensus       268 ~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~l~~i~~~~  342 (508)
                                         .+.. ...+++|+.|++.++ .++.+......     ..++.|+.+++.+++ +.......
T Consensus       256 -------------------lp~~-l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~  313 (332)
T 2ft3_A          256 -------------------VPAG-LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQP  313 (332)
T ss_dssp             -------------------CCTT-GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCG
T ss_pred             -------------------cChh-hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCc
Confidence                               1111 236789999999876 45554432211     226789999999865 32110011


Q ss_pred             cCCCCCCCcCcCcceeeccCcc
Q 047733          343 DRATAPTTAFPVLESLFLRDLR  364 (508)
Q Consensus       343 ~~~~~~~~~~p~L~~L~l~~c~  364 (508)
                      .    ....+++|+.+.+.++.
T Consensus       314 ~----~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          314 A----TFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             G----GGTTBCCSTTEEC----
T ss_pred             c----cccccchhhhhhccccc
Confidence            1    23357888888888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=5.5e-20  Score=176.73  Aligned_cols=246  Identities=16%  Similarity=0.210  Sum_probs=188.5

Q ss_pred             CcccEEEeecCCCC---CCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC-CCc
Q 047733           39 KVCTAISLKNSNIS---ELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL-PLP  113 (508)
Q Consensus        39 ~~lr~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~  113 (508)
                      .++++|+++++.+.   .++... .+++|++|++.+          .+.....+|..+ .++++|++|++++|.++ .+|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~----------~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p  118 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG----------INNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIP  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE----------ETTEESCCCGGG-GGCTTCSEEEEEEECCEEECC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCC----------CCcccccCChhH-hcCCCCCEEECcCCeeCCcCC
Confidence            67999999999996   466544 899999999983          023344566665 88999999999999997 788


Q ss_pred             hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCC-CCceEeccCCCCCCccChhhhhcC
Q 047733          114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLT-HLRLLDLSNCFNLKVIPPNVISSL  189 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l  189 (508)
                      ..+.++++|++|++++|.++.  |..++.+++|++|++++|.++ .+|..+..+. +|++|++++|.....+|.. +..+
T Consensus       119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l  197 (313)
T 1ogq_A          119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL  197 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGC
T ss_pred             HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCC
Confidence            889999999999999999874  688999999999999999888 7888888988 9999999998744456665 6777


Q ss_pred             CCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCC
Q 047733          190 SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSD  269 (508)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~  269 (508)
                      . |++|++++|.+...            .+..+..+++|+.|+++++.....+..+..+++|+.|.+..+...       
T Consensus       198 ~-L~~L~Ls~N~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-------  257 (313)
T 1ogq_A          198 N-LAFVDLSRNMLEGD------------ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-------  257 (313)
T ss_dssp             C-CSEEECCSSEEEEC------------CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-------
T ss_pred             c-ccEEECcCCcccCc------------CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc-------
Confidence            6 99999999887633            335678889999999999886554444667788888877644311       


Q ss_pred             CccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCc
Q 047733          270 DISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNL  335 (508)
Q Consensus       270 ~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  335 (508)
                                      .........+++|+.|++.++. ++...+.  ...+++|+.+++.+++.+
T Consensus       258 ----------------~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~--~~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          258 ----------------GTLPQGLTQLKFLHSLNVSFNN-LCGEIPQ--GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             ----------------ECCCGGGGGCTTCCEEECCSSE-EEEECCC--STTGGGSCGGGTCSSSEE
T ss_pred             ----------------CcCChHHhcCcCCCEEECcCCc-ccccCCC--CccccccChHHhcCCCCc
Confidence                            1112223467899999998874 4433222  267889999999887643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.80  E-value=8.8e-22  Score=206.78  Aligned_cols=396  Identities=14%  Similarity=0.061  Sum_probs=222.3

Q ss_pred             CCcccEEEeecCCCCCC--CCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCC-CChhhhhCCCCccEEEecCCcCCC--
Q 047733           38 LKVCTAISLKNSNISEL--PQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRR-IPDKFFTGMRELRVLDFARMHLLP--  111 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l--~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~--  111 (508)
                      .+++++|++++|.+.+.  ..+. .+++|++|++.+|           ..... ....++.++++|++|++++|.++.  
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~-----------~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~  172 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC-----------EGFSTDGLAAIAATCRNLKELDLRESDVDDVS  172 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC-----------EEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc-----------CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence            56899999999987432  2232 6899999999982           11111 123344689999999999998653  


Q ss_pred             ---CchhhccCccccEEeccCCC--CCC--c-cccCCCCCCcEEEccCC-CchhhHHHhccCCCCceEeccCCCC-----
Q 047733          112 ---LPSSLRLFQNLQTLSLDYCE--LGD--I-AIVGDLKTLVILTLRGS-DMEKLVEEIGQLTHLRLLDLSNCFN-----  177 (508)
Q Consensus       112 ---l~~~~~~l~~L~~L~l~~~~--l~~--~-~~i~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~-----  177 (508)
                         ++.....+++|++|++++|.  ++.  . ..+..+++|++|++++| .+..++..+.++++|++|++..+..     
T Consensus       173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~  252 (594)
T 2p1m_B          173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD  252 (594)
T ss_dssp             GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred             hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchh
Confidence               33334477899999999986  332  2 33456799999999998 6778888888999999998765531     


Q ss_pred             -CCccChhhhhcCCCCcEEE-eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCcc--CCCCCccCCCccE
Q 047733          178 -LKVIPPNVISSLSQLEELY-IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT--LPRDLSFFKMLQR  253 (508)
Q Consensus       178 -~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~~~~L~~  253 (508)
                       +..++.. +..+++|+.|. +....             ...+...+..+++|+.|+++++....  +...+..+++|+.
T Consensus       253 ~~~~l~~~-l~~~~~L~~Ls~~~~~~-------------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~  318 (594)
T 2p1m_B          253 VYSGLSVA-LSGCKELRCLSGFWDAV-------------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR  318 (594)
T ss_dssp             HHHHHHHH-HHTCTTCCEEECCBTCC-------------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE
T ss_pred             hHHHHHHH-HhcCCCcccccCCcccc-------------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE
Confidence             1112222 34555555552 11100             00111222234455555555444111  1111234455555


Q ss_pred             EEEEecCccc-CCCCCCCccceeeEEecc--------Cccccc--cchhhhcccceeEEEecCCCCccccccCCcCCCCC
Q 047733          254 YSILIGDQWA-WDSPSDDISGIFQLTVAS--------GANICL--NGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFP  322 (508)
Q Consensus       254 L~i~~~~~~~-~~~~~~~~~~l~~l~L~~--------~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  322 (508)
                      |.+..+.... .......+++|+.+.+..        +..+..  .......+++|++|.+ +|..+++.........++
T Consensus       319 L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~  397 (594)
T 2p1m_B          319 LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRP  397 (594)
T ss_dssp             EEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCT
T ss_pred             EeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCC
Confidence            5554331000 000001122343444421        111110  1112234789999965 555666543322223589


Q ss_pred             CCcEEEEe-----cCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceec
Q 047733          323 QLKHLEVV-----ENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVF  397 (508)
Q Consensus       323 ~L~~L~l~-----~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  397 (508)
                      +|++|++.     +|..++....+..... ....+++|+.|++.+  .+++.....+ ...+++|+.|++++|. +.+..
T Consensus       398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~-l~~~~~~L~~L~L~~--~l~~~~~~~l-~~~~~~L~~L~L~~~~-i~~~~  472 (594)
T 2p1m_B          398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGA-IVEHCKDLRRLSLSG--LLTDKVFEYI-GTYAKKMEMLSVAFAG-DSDLG  472 (594)
T ss_dssp             TCCEEEEEESSTTCCCTTTCCCTHHHHHH-HHHHCTTCCEEECCS--SCCHHHHHHH-HHHCTTCCEEEEESCC-SSHHH
T ss_pred             CcceeEeecccCCCcccccCCchhhHHHH-HHhhCCCccEEeecC--cccHHHHHHH-HHhchhccEeeccCCC-CcHHH
Confidence            99999999     5666553211000000 123578999999966  4443221111 1237899999999985 55443


Q ss_pred             chhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEe
Q 047733          398 PLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRIL  476 (508)
Q Consensus       398 ~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~  476 (508)
                      ...+...+++|++|++++|+. .+...          ......+++|++|++++|+. +.-....+...+|.|+...+.
T Consensus       473 ~~~l~~~~~~L~~L~L~~n~~-~~~~~----------~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          473 MHHVLSGCDSLRKLEIRDCPF-GDKAL----------LANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCSC-CHHHH----------HHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEEC
T ss_pred             HHHHHhcCCCcCEEECcCCCC-cHHHH----------HHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEec
Confidence            333446789999999999985 32221          11234579999999999965 333333333455777554444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=2.5e-19  Score=172.14  Aligned_cols=171  Identities=16%  Similarity=0.213  Sum_probs=133.9

Q ss_pred             CCCcEEEcCCCCCCCCCcccCCCCCC--CCChhhhhCCCCccEEEecC-CcCC-CCchhhccCccccEEeccCCCCCC--
Q 047733           61 PQLKYFHIANDPSRRIPVHIANDPSR--RIPDKFFTGMRELRVLDFAR-MHLL-PLPSSLRLFQNLQTLSLDYCELGD--  134 (508)
Q Consensus        61 ~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~l~~--  134 (508)
                      .+++.|++.+|           ...+  .+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.++.  
T Consensus        50 ~~l~~L~L~~~-----------~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  117 (313)
T 1ogq_A           50 YRVNNLDLSGL-----------NLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CCEEEEEEECC-----------CCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             ceEEEEECCCC-----------CccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC
Confidence            57899999883           3333  456655 8899999999995 7776 688889999999999999999874  


Q ss_pred             ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEeccCCCCCCccChhhhhcCC-CCcEEEeecCCCccccccCcCC
Q 047733          135 IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLS-QLEELYIGESPIMWGKVGGVDG  212 (508)
Q Consensus       135 ~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~  212 (508)
                      |..++++++|++|++++|.+. .+|..+..+++|++|++++|.....+|.. +..++ +|++|++++|.+.+..      
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~------  190 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKI------  190 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEEC------
T ss_pred             CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccC------
Confidence            688999999999999999888 77888899999999999998833467766 78887 8999999998776332      


Q ss_pred             CCcccchhhccCCCCccEEEEecccCc-cCCCCCccCCCccEEEEE
Q 047733          213 EGRNASLDELNNLSKLTSLEILIEDEK-TLPRDLSFFKMLQRYSIL  257 (508)
Q Consensus       213 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~i~  257 (508)
                            +..+..++ |+.|+++++... ..+..+..+++|+.|.+.
T Consensus       191 ------~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          191 ------PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             ------CGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             ------ChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence                  34556665 999999888743 344555667777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=2.2e-22  Score=204.57  Aligned_cols=393  Identities=15%  Similarity=0.094  Sum_probs=227.9

Q ss_pred             CCcccEEEeecCCCCCCC--C-CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-Cc
Q 047733           38 LKVCTAISLKNSNISELP--Q-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LP  113 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~  113 (508)
                      ++++++|+++++.+.+.+  . +..+++|++|++.+|.+...       ....++. .+..+++|++|++++|.++. .+
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-------~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~   73 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-------RCKDISS-ALRVNPALAELNLRSNELGDVGV   73 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH-------HHHHHHH-HHHTCTTCCEEECTTCCCHHHHH
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH-------HHHHHHH-HHHhCCCcCEEeCCCCcCChHHH
Confidence            456899999999885433  2 22789999999998322110       0002233 34778999999999998863 22


Q ss_pred             -hhhccCc----cccEEeccCCCCCC------ccccCCCCCCcEEEccCCCchhh-----HHHh-ccCCCCceEeccCCC
Q 047733          114 -SSLRLFQ----NLQTLSLDYCELGD------IAIVGDLKTLVILTLRGSDMEKL-----VEEI-GQLTHLRLLDLSNCF  176 (508)
Q Consensus       114 -~~~~~l~----~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~~l-----p~~~-~~l~~L~~L~l~~~~  176 (508)
                       .....+.    +|++|++++|.+++      +..+..+++|++|++++|.+...     ...+ ...++|++|++++|.
T Consensus        74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  153 (461)
T 1z7x_W           74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS  153 (461)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence             2233455    69999999998773      46788899999999999987632     2222 235689999999987


Q ss_pred             CCCccC----hhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhcc-CCCCccEEEEecccCcc-----CCCCCc
Q 047733          177 NLKVIP----PNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELN-NLSKLTSLEILIEDEKT-----LPRDLS  246 (508)
Q Consensus       177 ~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~-----~~~~l~  246 (508)
                       +....    ...+..+++|++|++++|.+.....        ..+...+. ..++|+.|+++++....     ++..+.
T Consensus       154 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  224 (461)
T 1z7x_W          154 -LSAASCEPLASVLRAKPDFKELTVSNNDINEAGV--------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA  224 (461)
T ss_dssp             -CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH--------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH--------HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH
Confidence             54422    1225678999999999887652211        11222222 35689999999887544     344556


Q ss_pred             cCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCcccccc---CCcCCCCCC
Q 047733          247 FFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLY---GSHGEGFPQ  323 (508)
Q Consensus       247 ~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~  323 (508)
                      .+++|+.|.+..+....                  .............+++|++|++.+| .++....   ......+++
T Consensus       225 ~~~~L~~L~Ls~n~l~~------------------~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~  285 (461)
T 1z7x_W          225 SKASLRELALGSNKLGD------------------VGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKES  285 (461)
T ss_dssp             HCTTCCEEECCSSBCHH------------------HHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTT
T ss_pred             hCCCccEEeccCCcCCh------------------HHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCC
Confidence            67888887775432100                  0000000111123678888888877 4443210   001134788


Q ss_pred             CcEEEEecCCCceeeee-cccCCCCCCCcCcCcceeeccCcccccccccC--cccccccccCCeEEEcCCCCcceecchh
Q 047733          324 LKHLEVVENSNLLCVVD-TVDRATAPTTAFPVLESLFLRDLRNLEKICRG--PLAAESFCQLRDMRVNGCDKLKNVFPLV  400 (508)
Q Consensus       324 L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~l~~~~  400 (508)
                      |++|+++++. ++.... .....  -....++|++|++++|. ++.....  +.....+++|++|+++++ .+.+.....
T Consensus       286 L~~L~Ls~n~-i~~~~~~~l~~~--l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~  360 (461)
T 1z7x_W          286 LKELSLAGNE-LGDEGARLLCET--LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRE  360 (461)
T ss_dssp             CCEEECTTCC-CHHHHHHHHHHH--HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHH
T ss_pred             cceEECCCCC-CchHHHHHHHHH--hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHH
Confidence            8888888753 321100 00000  01123688888888875 3322110  011234588888888887 565543322


Q ss_pred             hhh----ccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCcccc----ccCCccE
Q 047733          401 IGR----GLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHF----EFPSLEK  472 (508)
Q Consensus       401 ~~~----~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~----~~p~L~~  472 (508)
                      +..    ..++|++|++++|. +.+......       +..+..+++|++|++++| .+++.....+..    ..+.|+.
T Consensus       361 l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l-------~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~  431 (461)
T 1z7x_W          361 LCQGLGQPGSVLRVLWLADCD-VSDSSCSSL-------AATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQ  431 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSC-CCHHHHHHH-------HHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCE
T ss_pred             HHHHHcCCCCceEEEECCCCC-CChhhHHHH-------HHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhh
Confidence            222    15688888888874 332100000       123345788888888887 455443322221    2235888


Q ss_pred             EEEeeCCC
Q 047733          473 LRILECPQ  480 (508)
Q Consensus       473 L~i~~C~~  480 (508)
                      |++.++.-
T Consensus       432 L~~~~~~~  439 (461)
T 1z7x_W          432 LVLYDIYW  439 (461)
T ss_dssp             EECTTCCC
T ss_pred             eeeccccc
Confidence            87776653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=1.3e-17  Score=173.56  Aligned_cols=255  Identities=20%  Similarity=0.155  Sum_probs=163.2

Q ss_pred             CcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhcc
Q 047733           39 KVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRL  118 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~  118 (508)
                      .+++.|+++++.+..+|.... ++|++|++.+|.+            ..+|.    .+++|++|++++|.++.+|.   .
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l------------~~lp~----~l~~L~~L~Ls~N~l~~lp~---~   99 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL------------TSLPA----LPPELRTLEVSGNQLTSLPV---L   99 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC------------SCCCC----CCTTCCEEEECSCCCSCCCC---C
T ss_pred             CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCC------------CCCCC----cCCCCCEEEcCCCcCCcCCC---C
Confidence            358889999988888876443 7888888888433            33443    46788888888888888776   6


Q ss_pred             CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      +++|++|++++|.++. +.   .+.+|++|++++|.++.+|..   +++|++|++++|. +..++.    .+++|+.|++
T Consensus       100 l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L  168 (622)
T 3g06_A          100 PPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWA  168 (622)
T ss_dssp             CTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEEC
T ss_pred             CCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEEC
Confidence            7788888888888777 44   567888888888888777643   4788888888876 666654    3467888888


Q ss_pred             ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeE
Q 047733          198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQL  277 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l  277 (508)
                      .+|.++.             ++   ..+++|+.|++++|....+|..   +++                           
T Consensus       169 ~~N~l~~-------------l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~---------------------------  202 (622)
T 3g06_A          169 YNNQLTS-------------LP---MLPSGLQELSVSDNQLASLPTL---PSE---------------------------  202 (622)
T ss_dssp             CSSCCSC-------------CC---CCCTTCCEEECCSSCCSCCCCC---CTT---------------------------
T ss_pred             CCCCCCC-------------Cc---ccCCCCcEEECCCCCCCCCCCc---cch---------------------------
Confidence            8776651             11   3346777777777765544432   233                           


Q ss_pred             EeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcce
Q 047733          278 TVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLES  357 (508)
Q Consensus       278 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~  357 (508)
                                          |+.|++.++ .++.+.     ..+++|++|+++++ .++.+         + ..+++|+.
T Consensus       203 --------------------L~~L~L~~N-~l~~l~-----~~~~~L~~L~Ls~N-~L~~l---------p-~~l~~L~~  245 (622)
T 3g06_A          203 --------------------LYKLWAYNN-RLTSLP-----ALPSGLKELIVSGN-RLTSL---------P-VLPSELKE  245 (622)
T ss_dssp             --------------------CCEEECCSS-CCSSCC-----CCCTTCCEEECCSS-CCSCC---------C-CCCTTCCE
T ss_pred             --------------------hhEEECcCC-cccccC-----CCCCCCCEEEccCC-ccCcC---------C-CCCCcCcE
Confidence                                444444333 222211     12355666666553 33322         1 23456666


Q ss_pred             eeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733          358 LFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ  417 (508)
Q Consensus       358 L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  417 (508)
                      |+++++ .++.++.      .+++|+.|++++| .++.+|.  .+..+++|+.|++++++
T Consensus       246 L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          246 LMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             EECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred             EECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence            666664 3443321      4466777777776 5666643  24667777777777765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=8.1e-19  Score=171.71  Aligned_cols=147  Identities=22%  Similarity=0.293  Sum_probs=75.2

Q ss_pred             EEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccCccc
Q 047733           44 ISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQNL  122 (508)
Q Consensus        44 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L  122 (508)
                      .+.+++.+..+|... .++|++|++.+|            .+..++...|.++++|++|++++|.++.+ +..+.++++|
T Consensus        36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           36 CKGSSGSLNSIPSGL-TEAVKSLDLSNN------------RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             EECCSTTCSSCCTTC-CTTCCEEECTTS------------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             eeCCCCCcccccccc-cccCcEEECCCC------------cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence            555555555555422 235566666552            22233332235555566666666555543 2345555556


Q ss_pred             cEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733          123 QTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG  198 (508)
Q Consensus       123 ~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  198 (508)
                      ++|++++|.++. + ..++++++|++|++++|.++.+|.  .+..+++|++|++++|..+..++...+..+++|++|+++
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            666665555554 3 225555555555555555555543  344555555555555533444443334555555555555


Q ss_pred             cCCCc
Q 047733          199 ESPIM  203 (508)
Q Consensus       199 ~~~~~  203 (508)
                      +|.+.
T Consensus       183 ~n~l~  187 (353)
T 2z80_A          183 ASDLQ  187 (353)
T ss_dssp             ETTCC
T ss_pred             CCCcC
Confidence            55443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=2.5e-18  Score=164.72  Aligned_cols=190  Identities=19%  Similarity=0.223  Sum_probs=117.8

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC---chhhcc
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL---PSSLRL  118 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---~~~~~~  118 (508)
                      +.++..++.+..+|... .++|++|++.+            +.+..+|..+|.++++|++|++++|.++..   +..+..
T Consensus        10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~------------n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~   76 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI-PSSATRLELES------------NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG   76 (306)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEECCS------------SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred             CEEEcCCCCcccCCCCC-CCCCCEEECCC------------CccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence            35666666666666522 35777777776            333345555556777777777777776643   455666


Q ss_pred             CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733          119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL  195 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  195 (508)
                      +++|++|++++|.++. +..+..+++|++|++++|.++.++.  .+..+++|++|++++|. +...+...+..+++|++|
T Consensus        77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEE
Confidence            7777777777777666 5567777777777777777765553  46677777777777766 444443335677777777


Q ss_pred             EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEE
Q 047733          196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSI  256 (508)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i  256 (508)
                      ++++|.+...           ..+..+..+++|+.|+++++..... +..+..+++|+.|.+
T Consensus       156 ~l~~n~l~~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  206 (306)
T 2z66_A          156 KMAGNSFQEN-----------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  206 (306)
T ss_dssp             ECTTCEEGGG-----------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ECCCCccccc-----------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence            7777665421           1224456667777777776664433 333444444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=6.8e-19  Score=166.86  Aligned_cols=153  Identities=24%  Similarity=0.393  Sum_probs=72.8

Q ss_pred             CCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCc-CCCC-c
Q 047733           38 LKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMH-LLPL-P  113 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-~  113 (508)
                      ++++++|++++|.+.+++.  +..+++|++|++.+|.            +..++...|..+++|++|++++|. ++.+ +
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~------------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------------LARIDAAAFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------------CCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc------------cceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence            4455555555555544432  2245555555555421            122211223445555555555554 4443 3


Q ss_pred             hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733          114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLS  190 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  190 (508)
                      ..+..+++|++|++++|.++.  +..+.++++|++|++++|.++.++.. +..+++|++|++++|. +..++...+..++
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  177 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLH  177 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred             HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCcc
Confidence            445555555555555555444  23445555555555555555444322 4445555555555544 4444443344555


Q ss_pred             CCcEEEeecCCCc
Q 047733          191 QLEELYIGESPIM  203 (508)
Q Consensus       191 ~L~~L~l~~~~~~  203 (508)
                      +|++|++++|.+.
T Consensus       178 ~L~~L~l~~n~l~  190 (285)
T 1ozn_A          178 SLDRLLLHQNRVA  190 (285)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             ccCEEECCCCccc
Confidence            5555555555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.77  E-value=7.6e-18  Score=169.90  Aligned_cols=241  Identities=19%  Similarity=0.262  Sum_probs=179.2

Q ss_pred             ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccC
Q 047733           41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLF  119 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l  119 (508)
                      .+.++..+..+..+|... .++++.|++.+|            .+..++...|.++++|++|++++|.++.++ ..|..+
T Consensus        45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l  111 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI-STNTRLLNLHEN------------QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL  111 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC-CTTCSEEECCSC------------CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred             CCEEEeCCCCcCcCCCCC-CCCCcEEEccCC------------cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence            457777777778887643 378899999883            334444444688999999999999988655 678889


Q ss_pred             ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733          120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY  196 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  196 (508)
                      ++|++|++++|+++. + ..+..+++|++|++++|.++.++. .+.++++|++|++++|..+..++...+..+++|++|+
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence            999999999998887 4 568889999999999998887764 5778899999999987778888876678899999999


Q ss_pred             eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEEecCcccCCCCCCCcccee
Q 047733          197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIF  275 (508)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~  275 (508)
                      +++|.++              .+..+..+++|+.|++++|....+ +..+..+++|+.|.+..+...             
T Consensus       192 L~~n~l~--------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------  244 (440)
T 3zyj_A          192 LAMCNLR--------------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-------------  244 (440)
T ss_dssp             CTTSCCS--------------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-------------
T ss_pred             CCCCcCc--------------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-------------
Confidence            9988776              123477888999999998885555 556677888888877533211             


Q ss_pred             eEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCC
Q 047733          276 QLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENS  333 (508)
Q Consensus       276 ~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  333 (508)
                                .........+++|++|++.++ .++.+.... ...+++|+.|++.+++
T Consensus       245 ----------~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          245 ----------VIERNAFDNLQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNP  290 (440)
T ss_dssp             ----------EECTTSSTTCTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred             ----------EEChhhhcCCCCCCEEECCCC-CCCccChhH-hccccCCCEEEcCCCC
Confidence                      111222335788999999876 455443322 3568899999998854

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=4.8e-18  Score=166.23  Aligned_cols=181  Identities=20%  Similarity=0.277  Sum_probs=146.3

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      ...+++++|++++|.+.+++.  +..+++|++|++.+|            .+..++...|.++++|++|++++|.++.++
T Consensus        49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  116 (353)
T 2z80_A           49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN------------GINTIEEDSFSSLGSLEHLDLSYNYLSNLS  116 (353)
T ss_dssp             TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred             cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC------------ccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence            456789999999999988776  449999999999984            333444444588999999999999999888


Q ss_pred             hh-hccCccccEEeccCCCCCC-cc--ccCCCCCCcEEEccCC-CchhhH-HHhccCCCCceEeccCCCCCCccChhhhh
Q 047733          114 SS-LRLFQNLQTLSLDYCELGD-IA--IVGDLKTLVILTLRGS-DMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVIS  187 (508)
Q Consensus       114 ~~-~~~l~~L~~L~l~~~~l~~-~~--~i~~l~~L~~L~l~~~-~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  187 (508)
                      .. ++++++|++|++++|+++. +.  .+..+++|++|++++| .+..++ ..+..+++|++|++++|. +..+.+..+.
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~  195 (353)
T 2z80_A          117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLK  195 (353)
T ss_dssp             HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTT
T ss_pred             HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHh
Confidence            65 8899999999999999887 43  6889999999999998 577664 568899999999999988 5555443488


Q ss_pred             cCCCCcEEEeecCCCccccccCcCCCCcccchh-hccCCCCccEEEEecccCccCC
Q 047733          188 SLSQLEELYIGESPIMWGKVGGVDGEGRNASLD-ELNNLSKLTSLEILIEDEKTLP  242 (508)
Q Consensus       188 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~  242 (508)
                      .+++|++|++++|.+..             ... .+..+++|+.|+++++.....+
T Consensus       196 ~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          196 SIQNVSHLILHMKQHIL-------------LLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             TCSEEEEEEEECSCSTT-------------HHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             ccccCCeecCCCCcccc-------------chhhhhhhcccccEEECCCCcccccc
Confidence            99999999999988641             222 2445789999999998755443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=6.7e-18  Score=170.92  Aligned_cols=241  Identities=20%  Similarity=0.226  Sum_probs=175.4

Q ss_pred             ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccC
Q 047733           41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLF  119 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l  119 (508)
                      .+.++..+..+..+|... .+++++|++.+|            .+..++...|.++++|++|++++|.++.++ ..|..+
T Consensus        56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  122 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMEN------------NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL  122 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC-CTTCSEEECCSS------------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CcEEEECCCCcCccCCCC-CCCccEEECcCC------------cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc
Confidence            456777777777777533 368899999883            333343344588899999999999888654 678889


Q ss_pred             ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733          120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY  196 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  196 (508)
                      ++|++|++++|.++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+..+++|++|+
T Consensus       123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  202 (452)
T 3zyi_A          123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN  202 (452)
T ss_dssp             TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence            999999999998887 4 568888999999999998887764 5778899999999987778888876678889999999


Q ss_pred             eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEEecCcccCCCCCCCcccee
Q 047733          197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIF  275 (508)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~  275 (508)
                      +++|.+..              +..+..+++|+.|++++|..... +..+..+++|+.|.+..+...             
T Consensus       203 L~~n~l~~--------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------  255 (452)
T 3zyi_A          203 LGMCNIKD--------------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-------------  255 (452)
T ss_dssp             CTTSCCSS--------------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-------------
T ss_pred             CCCCcccc--------------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-------------
Confidence            99887761              23467788899999998885555 445677888888776533211             


Q ss_pred             eEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCC
Q 047733          276 QLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENS  333 (508)
Q Consensus       276 ~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  333 (508)
                                .........+++|+.|++.++ .++.+.... ...+++|++|++.+++
T Consensus       256 ----------~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          256 ----------LIERNAFDGLASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             ----------EECTTTTTTCTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred             ----------eECHHHhcCCCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence                      111122335688888888776 444443322 3567888999888754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=1.8e-17  Score=158.73  Aligned_cols=190  Identities=17%  Similarity=0.250  Sum_probs=162.4

Q ss_pred             CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      .++++++|++.++.+..++.+..+++|++|++++|            .+..++.  +..+++|++|++++|.++.++ .+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n------------~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~  103 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN------------QITDLAP--LKNLTKITELELSGNPLKNVS-AI  103 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS------------CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GG
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC------------cCCCChh--HccCCCCCEEEccCCcCCCch-hh
Confidence            36789999999999998987779999999999994            3344444  588999999999999998876 58


Q ss_pred             ccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733          117 RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY  196 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  196 (508)
                      ..+++|++|++++|.++....+..+++|++|++++|.+..++. +..+++|++|++++|. +..++.  +..+++|++|+
T Consensus       104 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~  179 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLK  179 (308)
T ss_dssp             TTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEE
T ss_pred             cCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEE
Confidence            8999999999999999885559999999999999999987765 8899999999999987 777766  78999999999


Q ss_pred             eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733          197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD  260 (508)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~  260 (508)
                      +++|.+..              +..+..+++|+.|++++|.....+. +..+++|+.|.+..+.
T Consensus       180 l~~n~l~~--------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          180 ADDNKISD--------------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CCSSCCCC--------------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred             CCCCccCc--------------ChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence            99998762              1237888999999999998776664 6789999999998654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.75  E-value=5e-17  Score=169.23  Aligned_cols=116  Identities=20%  Similarity=0.190  Sum_probs=84.1

Q ss_pred             ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcc
Q 047733          295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPL  374 (508)
Q Consensus       295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~  374 (508)
                      +++|+.|++.++ .++.+.     ..+++|+.|++.++ .++.+.          ..+++|+.|+++++ .++.++    
T Consensus       180 ~~~L~~L~Ls~N-~l~~l~-----~~~~~L~~L~L~~N-~l~~l~----------~~~~~L~~L~Ls~N-~L~~lp----  237 (622)
T 3g06_A          180 PSGLQELSVSDN-QLASLP-----TLPSELYKLWAYNN-RLTSLP----------ALPSGLKELIVSGN-RLTSLP----  237 (622)
T ss_dssp             CTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSSCC----------CCCTTCCEEECCSS-CCSCCC----
T ss_pred             CCCCcEEECCCC-CCCCCC-----CccchhhEEECcCC-cccccC----------CCCCCCCEEEccCC-ccCcCC----
Confidence            567788888765 344332     23589999999885 454332          23589999999986 455543    


Q ss_pred             cccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCc
Q 047733          375 AAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLP  453 (508)
Q Consensus       375 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  453 (508)
                        ..+++|++|+++++ .++.+|.     .+++|+.|++++| .+..+            +..+..+++|+.|++++++
T Consensus       238 --~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~l------------p~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          238 --VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRL------------PESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             --CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSC------------CGGGGGSCTTCEEECCSCC
T ss_pred             --CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcC------------CHHHhhccccCEEEecCCC
Confidence              45689999999997 7887764     5789999999987 45544            3346678999999999985

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.75  E-value=2.3e-20  Score=189.71  Aligned_cols=362  Identities=18%  Similarity=0.126  Sum_probs=230.5

Q ss_pred             CCCcccEEEeecCCCCC-----CCCC-CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCC----CccEEEecC
Q 047733           37 ALKVCTAISLKNSNISE-----LPQV-FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMR----ELRVLDFAR  106 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~  106 (508)
                      .++++++|++++|.+.+     ++.. ..+++|++|++++|.+           ....+..++..++    +|++|++++
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-----------~~~~~~~l~~~l~~~~~~L~~L~L~~   94 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-----------GDVGVHCVLQGLQTPSCKIQKLSLQN   94 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-----------HHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-----------ChHHHHHHHHHHhhCCCceeEEEccC
Confidence            35789999999999863     3332 2789999999998322           1222334445566    799999999


Q ss_pred             CcCC-----CCchhhccCccccEEeccCCCCCC--cccc-----CCCCCCcEEEccCCCch-----hhHHHhccCCCCce
Q 047733          107 MHLL-----PLPSSLRLFQNLQTLSLDYCELGD--IAIV-----GDLKTLVILTLRGSDME-----KLVEEIGQLTHLRL  169 (508)
Q Consensus       107 ~~~~-----~l~~~~~~l~~L~~L~l~~~~l~~--~~~i-----~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~  169 (508)
                      |.++     .++..+..+++|++|++++|.+++  +..+     ....+|++|++++|.++     .++..+..+++|++
T Consensus        95 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  174 (461)
T 1z7x_W           95 CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE  174 (461)
T ss_dssp             SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCE
T ss_pred             CCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCE
Confidence            9987     357888999999999999999875  3322     23568999999999876     45777888999999


Q ss_pred             EeccCCCCCCccChhhhh-----cCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC---
Q 047733          170 LDLSNCFNLKVIPPNVIS-----SLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL---  241 (508)
Q Consensus       170 L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---  241 (508)
                      |++++|. +.......+.     ..++|++|++++|.++..        ....+...+..+++|+.|+++++.....   
T Consensus       175 L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          175 LTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD--------NCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             EECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT--------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             EECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH--------HHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            9999987 5443222122     366999999999987622        1122456677889999999998874322   


Q ss_pred             ---CCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccC---
Q 047733          242 ---PRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYG---  315 (508)
Q Consensus       242 ---~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---  315 (508)
                         +.....+++|+.|.+..+....                   ............+++|++|++.++. +++....   
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~-------------------~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~  305 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITA-------------------KGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLC  305 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCH-------------------HHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHH
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCH-------------------HHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHH
Confidence               1112346778877765432100                   0000011123357899999998873 4332111   


Q ss_pred             -CcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccc---cccccCCeEEEcCCC
Q 047733          316 -SHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAA---ESFCQLRDMRVNGCD  391 (508)
Q Consensus       316 -~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~---~~~~~L~~L~l~~c~  391 (508)
                       ......++|++|++++|. ++... ...... ....+++|+.|+++++ .+++.....+..   ...++|++|++++| 
T Consensus       306 ~~l~~~~~~L~~L~L~~n~-l~~~~-~~~l~~-~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-  380 (461)
T 1z7x_W          306 ETLLEPGCQLESLWVKSCS-FTAAC-CSHFSS-VLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-  380 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSC-CBGGG-HHHHHH-HHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred             HHhccCCccceeeEcCCCC-CchHH-HHHHHH-HHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-
Confidence             111234799999999975 33210 000000 1234689999999997 454432111110   12579999999998 


Q ss_pred             Ccce-----ecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCce-eeccccCeeEcCCCc
Q 047733          392 KLKN-----VFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQV-IELTQLTILELCYLP  453 (508)
Q Consensus       392 ~l~~-----l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~  453 (508)
                      .+++     ++  .....+++|++|++++++ +.+.......       ..+ ...++|+.|.+.++.
T Consensus       381 ~i~~~~~~~l~--~~l~~~~~L~~L~l~~N~-i~~~~~~~l~-------~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          381 DVSDSSCSSLA--ATLLANHSLRELDLSNNC-LGDAGILQLV-------ESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             CCCHHHHHHHH--HHHHHCCCCCEEECCSSS-CCHHHHHHHH-------HHHTSTTCCCCEEECTTCC
T ss_pred             CCChhhHHHHH--HHHHhCCCccEEECCCCC-CCHHHHHHHH-------HHhccCCcchhheeecccc
Confidence            5653     22  234678999999999985 3332111000       001 123468888887764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=5.2e-17  Score=153.82  Aligned_cols=190  Identities=17%  Similarity=0.201  Sum_probs=141.9

Q ss_pred             ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccC
Q 047733           41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLF  119 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l  119 (508)
                      .+.++..++.+..+|.. ..++|+.|++.+|            .+..++...|..+++|++|++++|.++.+ +..+..+
T Consensus        13 ~~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n------------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   79 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVG-IPAASQRIFLHGN------------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL   79 (285)
T ss_dssp             SCEEECCSSCCSSCCTT-CCTTCSEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CeEEEcCcCCcccCCcC-CCCCceEEEeeCC------------cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence            46788888888888753 3578999999883            34445544458899999999999998865 6778899


Q ss_pred             ccccEEeccCCC-CCC--ccccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733          120 QNLQTLSLDYCE-LGD--IAIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL  195 (508)
Q Consensus       120 ~~L~~L~l~~~~-l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  195 (508)
                      ++|++|++++|. ++.  +..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++...+..+++|++|
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEE
Confidence            999999999997 776  47788899999999999988866 4557788999999999987 667776557788999999


Q ss_pred             EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEE
Q 047733          196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSI  256 (508)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i  256 (508)
                      ++++|.++...            ...+..+++|+.|+++++..... +..+..+++|+.|.+
T Consensus       159 ~l~~n~l~~~~------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  208 (285)
T 1ozn_A          159 FLHGNRISSVP------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (285)
T ss_dssp             ECCSSCCCEEC------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ECCCCcccccC------------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence            99988775221            12467778888888888764433 344444444444433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=3e-17  Score=155.63  Aligned_cols=196  Identities=19%  Similarity=0.211  Sum_probs=163.3

Q ss_pred             CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      .+++++.+++.++.+..+|... .++++.|++.+|            .+..++...|..+++|++|++++|.++.++.. 
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-   73 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN------------LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-   73 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS------------CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred             ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCC------------cCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence            4677999999999999888654 378999999983            34444444468999999999999999887764 


Q ss_pred             ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcE
Q 047733          117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE  194 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  194 (508)
                      +.+++|++|++++|.++. |..+..+++|++|++++|.++.+| ..+..+++|++|++++|. +..++...+..+++|+.
T Consensus        74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCE
Confidence            789999999999999888 778889999999999999999887 457899999999999987 77888766789999999


Q ss_pred             EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEec
Q 047733          195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIG  259 (508)
Q Consensus       195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~  259 (508)
                      |++++|.++...            ...+..+++|+.|++++|....+|..+....+|+.+.+.+.
T Consensus       153 L~L~~N~l~~l~------------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          153 LSLANNNLTELP------------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             EECTTSCCSCCC------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             EECCCCcCCccC------------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence            999999876221            13457789999999999998899988878888888887643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.74  E-value=1.8e-18  Score=166.55  Aligned_cols=108  Identities=19%  Similarity=0.210  Sum_probs=73.4

Q ss_pred             CChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCC
Q 047733           88 IPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTH  166 (508)
Q Consensus        88 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~  166 (508)
                      .+..++..+++|++|++++|.++.++ ..+..+++|++|++++|.++....+..+++|++|++++|.++.++    ..++
T Consensus        25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~  100 (317)
T 3o53_A           25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPS  100 (317)
T ss_dssp             HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTT
T ss_pred             hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCC
Confidence            34455566677888888888877654 567778888888888887766323777788888888887776554    3367


Q ss_pred             CceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCc
Q 047733          167 LRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIM  203 (508)
Q Consensus       167 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  203 (508)
                      |++|++++|. +..++.   ..+++|++|++++|.+.
T Consensus       101 L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~  133 (317)
T 3o53_A          101 IETLHAANNN-ISRVSC---SRGQGKKNIYLANNKIT  133 (317)
T ss_dssp             CCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCC
T ss_pred             cCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCC
Confidence            7777777766 555543   23566777777666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.73  E-value=2.4e-17  Score=157.89  Aligned_cols=185  Identities=17%  Similarity=0.202  Sum_probs=148.8

Q ss_pred             cCCCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      ..++++++|++++|.+..++..  ..+++|++|++.+|.+..+         ...+..+ ..+++|++|++++|.+..+|
T Consensus        25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~-~~~~~L~~L~Ls~n~i~~l~   94 (306)
T 2z66_A           25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK---------GCCSQSD-FGTTSLKYLDLSFNGVITMS   94 (306)
T ss_dssp             CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---------EEEEHHH-HSCSCCCEEECCSCSEEEEE
T ss_pred             CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---------cCccccc-ccccccCEEECCCCccccCh
Confidence            4567899999999999988863  4899999999998433211         1123444 67999999999999999999


Q ss_pred             hhhccCccccEEeccCCCCCC-c--cccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCC-ccChhhhhc
Q 047733          114 SSLRLFQNLQTLSLDYCELGD-I--AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLK-VIPPNVISS  188 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~  188 (508)
                      ..+..+++|++|++++|.++. +  ..+..+++|++|++++|.+... +..+..+++|++|++++|.... ..+.. +..
T Consensus        95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~  173 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTE  173 (306)
T ss_dssp             EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTT
T ss_pred             hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-Hhh
Confidence            889999999999999999776 3  5789999999999999988744 4567889999999999987333 25554 789


Q ss_pred             CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC
Q 047733          189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR  243 (508)
Q Consensus       189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  243 (508)
                      +++|++|++++|.+...            .+..+..+++|+.|++++|.....+.
T Consensus       174 l~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~~~~  216 (306)
T 2z66_A          174 LRNLTFLDLSQCQLEQL------------SPTAFNSLSSLQVLNMSHNNFFSLDT  216 (306)
T ss_dssp             CTTCCEEECTTSCCCEE------------CTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred             CcCCCEEECCCCCcCCc------------CHHHhcCCCCCCEEECCCCccCccCh
Confidence            99999999999987632            23567888999999999987555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.73  E-value=8.7e-17  Score=150.99  Aligned_cols=195  Identities=20%  Similarity=0.314  Sum_probs=143.6

Q ss_pred             CcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh-hc
Q 047733           39 KVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS-LR  117 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~  117 (508)
                      ...+.++++++.+..+|... .++++.|++.+|            .+..++...|.++++|++|++++|.++.++.. +.
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~   82 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSN------------KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK   82 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSS------------CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred             CCCCEEEccCCCCCccCCCC-CCCCCEEECcCC------------CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc
Confidence            34678888888888777633 367888888883            33344444457888888888888888877744 57


Q ss_pred             cCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccChhhhhcCCCCcE
Q 047733          118 LFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE  194 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  194 (508)
                      .+++|++|++++|.++. + ..+..+++|++|++++|.++.++. .+..+++|++|++++|. +..++...+..+++|++
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKE  161 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccce
Confidence            78888888888888777 3 567788888888888888876653 36788888888888876 66777655678888888


Q ss_pred             EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCC-CccCCCccEEEEEec
Q 047733          195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRD-LSFFKMLQRYSILIG  259 (508)
Q Consensus       195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~  259 (508)
                      |++++|.+....            ...+..+++|+.|+++++....++.. +..+++|+.+.+.+.
T Consensus       162 L~L~~n~l~~~~------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          162 LRLYNNQLKRVP------------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             EECCSSCCSCCC------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             eEecCCcCcEeC------------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            888888765221            13466778888888888886666654 466778887777543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.73  E-value=9.1e-17  Score=150.85  Aligned_cols=178  Identities=22%  Similarity=0.343  Sum_probs=150.2

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      .+++++++|++++|.+..++.  +..+++|++|++.+|            .+..++..+|.++++|++|++++|.++.++
T Consensus        34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n------------~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~  101 (270)
T 2o6q_A           34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN------------KLQTLPAGIFKELKNLETLWVTDNKLQALP  101 (270)
T ss_dssp             CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS------------CCSCCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred             CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC------------ccCeeChhhhcCCCCCCEEECCCCcCCcCC
Confidence            456789999999999988875  448999999999983            444566666789999999999999999877


Q ss_pred             -hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcC
Q 047733          114 -SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSL  189 (508)
Q Consensus       114 -~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  189 (508)
                       ..+..+++|++|++++|.++.  +..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+..+
T Consensus       102 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l  180 (270)
T 2o6q_A          102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKL  180 (270)
T ss_dssp             TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred             HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccC
Confidence             457899999999999999887  36689999999999999999988755 6889999999999987 777877557899


Q ss_pred             CCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733          190 SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE  238 (508)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  238 (508)
                      ++|++|++++|.++...            ...+..+++|+.|++++|..
T Consensus       181 ~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          181 TELKTLKLDNNQLKRVP------------EGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTCCEEECCSSCCSCCC------------TTTTTTCTTCCEEECCSSCB
T ss_pred             CCcCEEECCCCcCCcCC------------HHHhccccCCCEEEecCCCe
Confidence            99999999999876221            13467889999999998863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=7.7e-17  Score=162.52  Aligned_cols=197  Identities=18%  Similarity=0.270  Sum_probs=160.6

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      .+.++++.|++++|.+..++.  +..+++|++|++++|            .+..++...|.++++|++|++++|.++.++
T Consensus        61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n------------~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~  128 (440)
T 3zyj_A           61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN------------HIRTIEIGAFNGLANLNTLELFDNRLTTIP  128 (440)
T ss_dssp             CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS------------CCCEECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred             CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC------------cCCccChhhccCCccCCEEECCCCcCCeeC
Confidence            456889999999999987753  348999999999993            344555555689999999999999999887


Q ss_pred             h-hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCC-CchhhHH-HhccCCCCceEeccCCCCCCccChhhhhc
Q 047733          114 S-SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGS-DMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISS  188 (508)
Q Consensus       114 ~-~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  188 (508)
                      . .+..+++|++|++++|.++. + ..+.++++|++|+++++ .+..++. .+..+++|++|++++|. +..+|.  +..
T Consensus       129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~  205 (440)
T 3zyj_A          129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTP  205 (440)
T ss_dssp             TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTT
T ss_pred             HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCC
Confidence            5 68899999999999999887 4 67889999999999985 6666664 47789999999999987 778876  789


Q ss_pred             CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC-CCCccCCCccEEEEEec
Q 047733          189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP-RDLSFFKMLQRYSILIG  259 (508)
Q Consensus       189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~  259 (508)
                      +++|++|++++|.+....            ...+..+++|+.|+++++....++ ..+..+++|+.|++..+
T Consensus       206 l~~L~~L~Ls~N~l~~~~------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          206 LIKLDELDLSGNHLSAIR------------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             CSSCCEEECTTSCCCEEC------------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             CcccCEEECCCCccCccC------------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            999999999999876332            356788899999999998865554 45677888888887644

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=4.6e-17  Score=153.44  Aligned_cols=199  Identities=20%  Similarity=0.232  Sum_probs=158.6

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      .+.+++++|++++|.+.+++.  +..+++|++|++.+|            .+..++...|.++++|++|++++|.++.++
T Consensus        25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (276)
T 2z62_A           25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLA   92 (276)
T ss_dssp             SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC------------CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC------------cCCccCHHHccCCcCCCEEECCCCccCccC
Confidence            456789999999999987764  448999999999994            334445444688999999999999998765


Q ss_pred             -hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchh--hHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733          114 -SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEK--LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS  188 (508)
Q Consensus       114 -~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  188 (508)
                       ..+..+++|++|++++|.++. + ..++.+++|++|++++|.++.  +|..+..+++|++|++++|. +..++...+..
T Consensus        93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~  171 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV  171 (276)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHH
T ss_pred             hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhh
Confidence             678999999999999999887 3 568999999999999998885  67889999999999999987 77776544666


Q ss_pred             CCCCc----EEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCC-ccCCCccEEEEEecC
Q 047733          189 LSQLE----ELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDL-SFFKMLQRYSILIGD  260 (508)
Q Consensus       189 l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~i~~~~  260 (508)
                      +++|+    .|++++|.+...             ........+|+.|+++++....++... ..+++|+.+.+.+..
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~-------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFI-------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEE-------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             hhhccccceeeecCCCccccc-------------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            66666    889998887622             222333448999999999977777654 778899988886433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.72  E-value=8.7e-17  Score=162.69  Aligned_cols=198  Identities=19%  Similarity=0.260  Sum_probs=159.9

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      .+.++++.|++++|.+..++.  +..+++|++|++++|            .+..++...|.++++|++|++++|.++.++
T Consensus        72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  139 (452)
T 3zyi_A           72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN------------SIRQIEVGAFNGLASLNTLELFDNWLTVIP  139 (452)
T ss_dssp             CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS------------CCCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred             CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC------------ccCCcChhhccCcccCCEEECCCCcCCccC
Confidence            456789999999999987743  348999999999994            334444444688999999999999998877


Q ss_pred             h-hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCC-CchhhHH-HhccCCCCceEeccCCCCCCccChhhhhc
Q 047733          114 S-SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGS-DMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISS  188 (508)
Q Consensus       114 ~-~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  188 (508)
                      . .+..+++|++|++++|.++. + ..+.++++|++|+++++ .+..++. .+..+++|++|++++|. +..++.  +..
T Consensus       140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~  216 (452)
T 3zyi_A          140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTP  216 (452)
T ss_dssp             TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTT
T ss_pred             hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccc
Confidence            4 48889999999999999887 4 67889999999999984 6666664 47789999999999987 777775  688


Q ss_pred             CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEEecC
Q 047733          189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGD  260 (508)
Q Consensus       189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~  260 (508)
                      +++|++|++++|.+...            .+..+..+++|+.|+++++..... +..+..+++|+.|++..+.
T Consensus       217 l~~L~~L~Ls~N~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEI------------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             CTTCCEEECTTSCCSEE------------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cccccEEECcCCcCccc------------CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence            99999999999987633            235688889999999999885554 4456778889988886543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.70  E-value=3.4e-16  Score=147.04  Aligned_cols=175  Identities=22%  Similarity=0.303  Sum_probs=136.2

Q ss_pred             CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-h
Q 047733           37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-S  115 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~  115 (508)
                      .+++++.|++.++.+..++.+..+++|++|++.+|.+            ..++ . +..+++|++|++++|.++.++. .
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l------------~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~  104 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL------------HDIS-A-LKELTNLTYLILTGNQLQSLPNGV  104 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC------------CCCG-G-GTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCC------------CCch-h-hcCCCCCCEEECCCCccCccChhH
Confidence            4677899999999888888777899999999988433            2222 2 4788899999999998887664 4


Q ss_pred             hccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCC
Q 047733          116 LRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL  192 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  192 (508)
                      +..+++|++|++++|.++. + ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..++...+..+++|
T Consensus       105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L  183 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQL  183 (272)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccC
Confidence            6888999999999998877 4 5578889999999999988877644 5788899999999887 667776556788899


Q ss_pred             cEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733          193 EELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE  238 (508)
Q Consensus       193 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  238 (508)
                      ++|++++|.+....            ...+..+++|+.|++++|..
T Consensus       184 ~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          184 KDLRLYQNQLKSVP------------DGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CEEECCSSCCSCCC------------TTTTTTCTTCCEEECCSSCB
T ss_pred             CEEECCCCcCCccC------------HHHHhCCcCCCEEEccCCCc
Confidence            99999888776321            13467788888888887753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=4.8e-16  Score=148.72  Aligned_cols=175  Identities=21%  Similarity=0.352  Sum_probs=149.9

Q ss_pred             cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733           36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS  115 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  115 (508)
                      ..++++++|++++|.+.+++.+..+++|++|++++|.+.            .++ . +..+++|++|++++|.++.++. 
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~------------~~~-~-~~~l~~L~~L~l~~n~l~~~~~-  124 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK------------NVS-A-IAGLQSIKTLDLTSTQITDVTP-  124 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS------------CCG-G-GTTCTTCCEEECTTSCCCCCGG-
T ss_pred             hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC------------Cch-h-hcCCCCCCEEECCCCCCCCchh-
Confidence            457899999999999998888779999999999995443            333 2 5789999999999999998875 


Q ss_pred             hccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733          116 LRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL  195 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  195 (508)
                      +..+++|++|++++|.++....++.+++|++|++++|.++.++. +..+++|++|++++|. +..++.  +..+++|++|
T Consensus       125 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L  200 (308)
T 1h6u_A          125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEV  200 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEE
T ss_pred             hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEE
Confidence            89999999999999999885448899999999999999998776 8899999999999987 777776  7899999999


Q ss_pred             EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC
Q 047733          196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR  243 (508)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  243 (508)
                      ++++|.+...              ..+..+++|+.|+++++.....|.
T Consensus       201 ~L~~N~l~~~--------------~~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          201 HLKNNQISDV--------------SPLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             ECTTSCCCBC--------------GGGTTCTTCCEEEEEEEEEECCCE
T ss_pred             EccCCccCcc--------------ccccCCCCCCEEEccCCeeecCCe
Confidence            9999987622              247889999999999998655544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.69  E-value=8.6e-18  Score=161.74  Aligned_cols=239  Identities=13%  Similarity=0.086  Sum_probs=174.5

Q ss_pred             CCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733           38 LKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS  115 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  115 (508)
                      .+++++|++++|.+..+++  +..+++|++|++++|.+            ...+.  +..+++|++|++++|.++.++  
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~--~~~l~~L~~L~Ls~n~l~~l~--   96 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL------------YETLD--LESLSTLRTLDLNNNYVQELL--   96 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC------------EEEEE--ETTCTTCCEEECCSSEEEEEE--
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC------------Ccchh--hhhcCCCCEEECcCCcccccc--
Confidence            4579999999999988764  34899999999998433            22222  478999999999999987665  


Q ss_pred             hccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccCh-hhhhcCCCC
Q 047733          116 LRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPP-NVISSLSQL  192 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L  192 (508)
                        ..++|++|++++|.++. +..  .+++|++|++++|.++.++. .+..+++|++|++++|. +..++. .....+++|
T Consensus        97 --~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L  171 (317)
T 3o53_A           97 --VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTL  171 (317)
T ss_dssp             --ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTC
T ss_pred             --CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcC
Confidence              33789999999999887 322  36889999999999887754 57788999999999987 555543 323478999


Q ss_pred             cEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCcc
Q 047733          193 EELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDIS  272 (508)
Q Consensus       193 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~  272 (508)
                      ++|++++|.++..              .....+++|+.|++++|....++..+..+++|+.|.+..+.....        
T Consensus       172 ~~L~L~~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l--------  229 (317)
T 3o53_A          172 EHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--------  229 (317)
T ss_dssp             CEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--------
T ss_pred             CEEECCCCcCccc--------------ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch--------
Confidence            9999999987622              233457899999999999888887788889999888764432111        


Q ss_pred             ceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCce
Q 047733          273 GIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLL  336 (508)
Q Consensus       273 ~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  336 (508)
                                     +. ....+++|+.|++.+++-....... ....+++|+.+++.++..++
T Consensus       230 ---------------~~-~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          230 ---------------EK-ALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             ---------------CT-TCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHHHHHHHHHHHHH
T ss_pred             ---------------hh-HhhcCCCCCEEEccCCCccCcCHHH-HHhccccceEEECCCchhcc
Confidence                           11 1235678899999877554232221 12457788888887665544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=3.8e-16  Score=148.08  Aligned_cols=170  Identities=24%  Similarity=0.354  Sum_probs=116.8

Q ss_pred             CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733           38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR  117 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  117 (508)
                      +++++.|++++|.+..++.+..+++|++|++++|.            +..++.  +.++++|++|++++|.++.++. +.
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~------------l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~  109 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK------------LTDIKP--LANLKNLGWLFLDENKVKDLSS-LK  109 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC------------CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GT
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCc------------cCCCcc--cccCCCCCEEECCCCcCCCChh-hc
Confidence            55677777777777777666677777777777732            223333  4677777777777777776554 67


Q ss_pred             cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      .+++|++|++++|.++++..+..+++|++|++++|.++.+ ..+..+++|++|++++|. +..++.  +..+++|+.|++
T Consensus       110 ~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L  185 (291)
T 1h6t_A          110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYL  185 (291)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred             cCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEEC
Confidence            7777777777777777655677777777777777777766 356677777777777766 555554  567777777777


Q ss_pred             ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCcc
Q 047733          198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT  240 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  240 (508)
                      ++|.++              .+..+..+++|+.|+++++....
T Consensus       186 ~~N~i~--------------~l~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          186 SKNHIS--------------DLRALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSSCCC--------------BCGGGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCcCC--------------CChhhccCCCCCEEECcCCcccC
Confidence            777665              12346677777777777765433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=1.6e-16  Score=146.38  Aligned_cols=194  Identities=13%  Similarity=0.183  Sum_probs=155.0

Q ss_pred             CCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecC-CcCCCCc
Q 047733           37 ALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFAR-MHLLPLP  113 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~  113 (508)
                      +.++++.|++++|.+..++.  +..+++|++|++.+|.           .+..++...|.++++|++|++++ |.++.++
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-----------~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-----------TLQQLESHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS-----------SCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC-----------CcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence            56789999999999988876  3389999999999832           24555655568999999999998 8998776


Q ss_pred             -hhhccCccccEEeccCCCCCCccccCCCCCCc---EEEccCC-CchhhHHH-hccCCCCc-eEeccCCCCCCccChhhh
Q 047733          114 -SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLV---ILTLRGS-DMEKLVEE-IGQLTHLR-LLDLSNCFNLKVIPPNVI  186 (508)
Q Consensus       114 -~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~---~L~l~~~-~i~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~~l  186 (508)
                       ..|..+++|++|++++|.++..+.++.+.+|+   +|++++| .++.+|.. +..+++|+ +|++++|. +..++...+
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~  176 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF  176 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT
T ss_pred             HHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc
Confidence             56889999999999999988833378888888   9999999 89888754 78899999 99999987 778887644


Q ss_pred             hcCCCCcEEEeecCC-CccccccCcCCCCcccchhhccCC-CCccEEEEecccCccCCCCCccCCCccEEEEE
Q 047733          187 SSLSQLEELYIGESP-IMWGKVGGVDGEGRNASLDELNNL-SKLTSLEILIEDEKTLPRDLSFFKMLQRYSIL  257 (508)
Q Consensus       187 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  257 (508)
                      .. ++|++|++++|. ++...            ...+..+ ++|+.|+++++....+|..  .+++|+.|.+.
T Consensus       177 ~~-~~L~~L~L~~n~~l~~i~------------~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~  234 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLTVID------------KDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR  234 (239)
T ss_dssp             TT-CEEEEEECTTCTTCCEEC------------TTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred             CC-CCCCEEEcCCCCCcccCC------------HHHhhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence            44 899999999984 65221            2446777 8999999999987777766  57788877653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=1.5e-16  Score=149.48  Aligned_cols=182  Identities=20%  Similarity=0.322  Sum_probs=148.6

Q ss_pred             cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-
Q 047733           36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-  114 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-  114 (508)
                      ..++++++|++++|.+.+++.+..+++|++|++.+|            .+..++...|.++++|++|++++|.++.++. 
T Consensus        60 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  127 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN------------QLQSLPNGVFDKLTNLKELVLVENQLQSLPDG  127 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS------------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC------------ccCccChhHhcCCcCCCEEECCCCcCCccCHH
Confidence            457899999999999988887779999999999993            3445555556899999999999999997764 


Q ss_pred             hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733          115 SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ  191 (508)
Q Consensus       115 ~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  191 (508)
                      .++.+++|++|++++|.++. + ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..+++..+..+++
T Consensus       128 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  206 (272)
T 3rfs_A          128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTS  206 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred             HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcC
Confidence            47899999999999999887 4 5578999999999999999877654 5789999999999988 77777665789999


Q ss_pred             CcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc-CccCCCCCccCC
Q 047733          192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED-EKTLPRDLSFFK  249 (508)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~  249 (508)
                      |+.|++++|.+.                   +.+++|+.+++..+. .+.+|.+++.+.
T Consensus       207 L~~L~l~~N~~~-------------------~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          207 LQYIWLHDNPWD-------------------CTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CCEEECCSSCBC-------------------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCEEEccCCCcc-------------------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence            999999998764                   334567777766655 455666654443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.68  E-value=8e-17  Score=154.60  Aligned_cols=218  Identities=17%  Similarity=0.196  Sum_probs=157.5

Q ss_pred             CcccEEEeecCCCCC--CCCCC--------CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhh-hCCCCccEEEecCC
Q 047733           39 KVCTAISLKNSNISE--LPQVF--------ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFF-TGMRELRVLDFARM  107 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~  107 (508)
                      ..+++|++++|.+..  ++...        .+++|++|++++|.+           ...+|..+| ..+++|++|++++|
T Consensus        63 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-----------~~~~~~~~~~~~l~~L~~L~Ls~N  131 (312)
T 1wwl_A           63 DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV-----------TGTAPPPLLEATGPDLNILNLRNV  131 (312)
T ss_dssp             HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC-----------BSCCCCCSSSCCSCCCSEEEEESC
T ss_pred             HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc-----------cchhHHHHHHhcCCCccEEEccCC
Confidence            347777777777633  33322        488999999988432           234454433 78899999999999


Q ss_pred             cCCCCchhhccC-----ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchh---hHHHh--ccCCCCceEeccCC
Q 047733          108 HLLPLPSSLRLF-----QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEK---LVEEI--GQLTHLRLLDLSNC  175 (508)
Q Consensus       108 ~~~~l~~~~~~l-----~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~---lp~~~--~~l~~L~~L~l~~~  175 (508)
                      .++..|..++.+     ++|++|++++|+++. + ..++.+++|++|++++|.+..   +|..+  ..+++|++|++++|
T Consensus       132 ~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N  211 (312)
T 1wwl_A          132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA  211 (312)
T ss_dssp             BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred             CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence            998778778777     899999999999887 4 788999999999999997542   45555  78999999999998


Q ss_pred             CCCCc---cChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCcc
Q 047733          176 FNLKV---IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQ  252 (508)
Q Consensus       176 ~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~  252 (508)
                      . +..   ++...+..+++|++|++++|.+....+           ...+..+++|+.|++++|....+|..+.  ++|+
T Consensus       212 ~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~  277 (312)
T 1wwl_A          212 G-METPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----------APSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS  277 (312)
T ss_dssp             C-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----------CSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred             c-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----------hhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence            7 653   333434678999999999988763321           1334567899999999998878888764  7788


Q ss_pred             EEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCC
Q 047733          253 RYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGS  306 (508)
Q Consensus       253 ~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~  306 (508)
                      .|+++.+.....                       +  ....+++|++|++.+.
T Consensus       278 ~L~Ls~N~l~~~-----------------------p--~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          278 VLDLSYNRLDRN-----------------------P--SPDELPQVGNLSLKGN  306 (312)
T ss_dssp             EEECCSSCCCSC-----------------------C--CTTTSCEEEEEECTTC
T ss_pred             EEECCCCCCCCC-----------------------h--hHhhCCCCCEEeccCC
Confidence            777764432111                       1  1235788899988765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.67  E-value=3.3e-16  Score=148.44  Aligned_cols=175  Identities=18%  Similarity=0.232  Sum_probs=148.8

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      .+.++++.|++++|.+..++.  +..+++|++|++.+|.+..++.              ...+++|++|++++|.++.+|
T Consensus        28 ~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------~~~l~~L~~L~Ls~N~l~~l~   93 (290)
T 1p9a_G           28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--------------DGTLPVLGTLDLSHNQLQSLP   93 (290)
T ss_dssp             CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------------CSCCTTCCEEECCSSCCSSCC
T ss_pred             CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------------CCCCCcCCEEECCCCcCCcCc
Confidence            456889999999999977653  3489999999999955443322              157899999999999999999


Q ss_pred             hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733          114 SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLS  190 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  190 (508)
                      ..+..+++|++|++++|+++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+..++
T Consensus        94 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~  172 (290)
T 1p9a_G           94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLE  172 (290)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCT
T ss_pred             hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcC
Confidence            989999999999999999988 4 7799999999999999999988755 5789999999999987 8888887678899


Q ss_pred             CCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733          191 QLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE  238 (508)
Q Consensus       191 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  238 (508)
                      +|++|++++|.++             .++.++....+|+.+++.+|..
T Consensus       173 ~L~~L~L~~N~l~-------------~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          173 NLDTLLLQENSLY-------------TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TCCEEECCSSCCC-------------CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCCEEECCCCcCC-------------ccChhhcccccCCeEEeCCCCc
Confidence            9999999999886             3445666778999999998863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=1.4e-15  Score=141.17  Aligned_cols=174  Identities=19%  Similarity=0.294  Sum_probs=127.8

Q ss_pred             cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhcc
Q 047733           40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRL  118 (508)
Q Consensus        40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~  118 (508)
                      ..++++++++.+..+|.... ++++.|++.+|.            +..++...|.++++|++|++++|.++.++ ..+..
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   81 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTG------------LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD   81 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSC------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCC------------cCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence            35678888888887776433 678888888833            33333333578888888888888887655 45778


Q ss_pred             CccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733          119 FQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL  195 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  195 (508)
                      +++|++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+..+++|++|
T Consensus        82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEE
Confidence            8888888888888777 3 6677888888888888888877654 5678888888888876 667776447788888888


Q ss_pred             EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCc
Q 047733          196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEK  239 (508)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  239 (508)
                      ++++|.+....            ...+..+++|+.|++++|...
T Consensus       161 ~L~~N~l~~~~------------~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          161 SLSTNQLQSVP------------HGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             ECCSSCCSCCC------------TTTTTTCTTCCEEECCSCCBC
T ss_pred             ECCCCcCCccC------------HHHHhCCCCCCEEEeeCCcee
Confidence            88888776221            134667778888888877643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=2.4e-15  Score=141.68  Aligned_cols=175  Identities=21%  Similarity=0.327  Sum_probs=114.5

Q ss_pred             EEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccc
Q 047733           44 ISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNL  122 (508)
Q Consensus        44 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L  122 (508)
                      ++-.+..+..+|... -++|++|++++|.            +..++...|.++++|++|++++|.++.++ ..+..+++|
T Consensus        12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (276)
T 2z62_A           12 YQCMELNFYKIPDNL-PFSTKNLDLSFNP------------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL   78 (276)
T ss_dssp             EECTTSCCSSCCSSS-CTTCCEEECTTCC------------CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTC
T ss_pred             EEecCCCccccCCCC-CCCccEEECCCCc------------ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCC
Confidence            344444455566532 2468888888733            33344333577888888888888887655 467788888


Q ss_pred             cEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCc--cChhhhhcCCCCcEEEe
Q 047733          123 QTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKV--IPPNVISSLSQLEELYI  197 (508)
Q Consensus       123 ~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l  197 (508)
                      ++|++++|.++.  +..+.++++|++|++++|.+..++. .+..+++|++|++++|. +..  +|.. +..+++|++|++
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~L  156 (276)
T 2z62_A           79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDL  156 (276)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEEC
T ss_pred             CEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEEC
Confidence            888888888776  3677888888888888887776654 46778888888888876 444  4554 677888888888


Q ss_pred             ecCCCccccccCcCCCCcccchhhccCCCCcc-EEEEecccCccCC
Q 047733          198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLT-SLEILIEDEKTLP  242 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~  242 (508)
                      ++|.++....         ..+..+..++.|. .|+++++....++
T Consensus       157 s~N~l~~~~~---------~~~~~l~~L~~l~l~L~ls~n~l~~~~  193 (276)
T 2z62_A          157 SSNKIQSIYC---------TDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (276)
T ss_dssp             CSSCCCEECG---------GGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred             CCCCCCcCCH---------HHhhhhhhccccceeeecCCCcccccC
Confidence            8877653211         1223334444444 5666666544433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.65  E-value=1.3e-16  Score=162.50  Aligned_cols=233  Identities=12%  Similarity=0.073  Sum_probs=171.1

Q ss_pred             CCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733           38 LKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS  115 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  115 (508)
                      +++++.|++++|.+..+++  +..+++|++|++++|.+.            ..+.  +..+++|++|++++|.++.+|. 
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~--l~~l~~L~~L~Ls~N~l~~l~~-   97 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY------------ETLD--LESLSTLRTLDLNNNYVQELLV-   97 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE------------EEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC------------CCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence            4589999999999988764  449999999999994332            2222  4789999999999999887663 


Q ss_pred             hccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCc-cChhhhhcCCCC
Q 047733          116 LRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKV-IPPNVISSLSQL  192 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L  192 (508)
                         .++|++|++++|.++. +.  ..+++|++|++++|.+..+ |..+..+++|++|++++|. +.. .+......+++|
T Consensus        98 ---~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L  171 (487)
T 3oja_A           98 ---GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTL  171 (487)
T ss_dssp             ---CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTC
T ss_pred             ---CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcc
Confidence               3789999999999888 43  2468999999999999866 4567889999999999988 554 444423479999


Q ss_pred             cEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCcc
Q 047733          193 EELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDIS  272 (508)
Q Consensus       193 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~  272 (508)
                      +.|++++|.++..              .....+++|+.|++++|....+|..+..+++|+.|+++.+.......      
T Consensus       172 ~~L~Ls~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~------  231 (487)
T 3oja_A          172 EHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK------  231 (487)
T ss_dssp             CEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT------
T ss_pred             cEEecCCCccccc--------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch------
Confidence            9999999988622              33446889999999999988888888888999999886543211111      


Q ss_pred             ceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEe
Q 047733          273 GIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVV  330 (508)
Q Consensus       273 ~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  330 (508)
                                        ....+++|+.|++.+++........ ....++.|+.+.+.
T Consensus       232 ------------------~l~~l~~L~~L~l~~N~l~c~~~~~-~~~~l~~L~~l~~~  270 (487)
T 3oja_A          232 ------------------ALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ------------------TCCCCTTCCEEECTTCCBCHHHHHH-HHTTCHHHHHHHHH
T ss_pred             ------------------hhccCCCCCEEEcCCCCCcCcchHH-HHHhCCCCcEEecc
Confidence                              1224577888888776543222111 12345666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=4.9e-16  Score=147.38  Aligned_cols=187  Identities=21%  Similarity=0.221  Sum_probs=153.7

Q ss_pred             cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccC
Q 047733           40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLF  119 (508)
Q Consensus        40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l  119 (508)
                      ++.++.+....+.++.....+++|+.|++.+|.+            ..++.  +..+++|++|++++|.++.++. +..+
T Consensus        25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i------------~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l   89 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI------------KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANL   89 (291)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCC------------CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred             HHHHHHhcCCCcccccchhhcCcccEEEccCCCc------------ccChh--HhcCCCCCEEEccCCccCCCcc-cccC
Confidence            3444556666666555555889999999998433            33333  4789999999999999998877 8999


Q ss_pred             ccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeec
Q 047733          120 QNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGE  199 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  199 (508)
                      ++|++|++++|.++.+..++.+++|++|++++|.++.++ .+..+++|++|++++|. +..++.  +..+++|++|++++
T Consensus        90 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~  165 (291)
T 1h6t_A           90 KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLED  165 (291)
T ss_dssp             TTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCS
T ss_pred             CCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccC
Confidence            999999999999998767999999999999999998875 68899999999999987 666743  78999999999999


Q ss_pred             CCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733          200 SPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD  260 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~  260 (508)
                      |.+..             . ..+..+++|+.|++++|....++. +..+++|+.|.+.++.
T Consensus       166 N~l~~-------------~-~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          166 NQISD-------------I-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             SCCCC-------------C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             Ccccc-------------c-hhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence            98762             1 228889999999999998777654 6789999999998654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.65  E-value=1.1e-15  Score=146.69  Aligned_cols=191  Identities=22%  Similarity=0.244  Sum_probs=150.0

Q ss_pred             CCcccEEEeecCCCC-CCCCC---CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCC-----CCccEEEecCCc
Q 047733           38 LKVCTAISLKNSNIS-ELPQV---FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGM-----RELRVLDFARMH  108 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~-~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~  108 (508)
                      ++++++|++++|.+. .+|..   ..+++|++|++++|.+            ..+|..+ ..+     ++|++|++++|.
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l------------~~~~~~~-~~l~~~~~~~L~~L~L~~N~  160 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW------------ATRDAWL-AELQQWLKPGLKVLSIAQAH  160 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC------------SSSSSHH-HHHHTTCCTTCCEEEEESCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC------------cchhHHH-HHHHHhhcCCCcEEEeeCCC
Confidence            678999999999995 45653   4899999999999433            3334333 444     999999999999


Q ss_pred             CCCCc-hhhccCccccEEeccCCCCCC----cccc--CCCCCCcEEEccCCCch---hhHHH-hccCCCCceEeccCCCC
Q 047733          109 LLPLP-SSLRLFQNLQTLSLDYCELGD----IAIV--GDLKTLVILTLRGSDME---KLVEE-IGQLTHLRLLDLSNCFN  177 (508)
Q Consensus       109 ~~~l~-~~~~~l~~L~~L~l~~~~l~~----~~~i--~~l~~L~~L~l~~~~i~---~lp~~-~~~l~~L~~L~l~~~~~  177 (508)
                      +..++ ..++++++|++|++++|++..    +..+  +.+++|++|++++|.++   .++.. +..+++|++|++++|. 
T Consensus       161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-  239 (312)
T 1wwl_A          161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-  239 (312)
T ss_dssp             CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-
T ss_pred             CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-
Confidence            99776 789999999999999999654    3344  88999999999999888   44433 4588999999999988 


Q ss_pred             CCccC-hhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEE
Q 047733          178 LKVIP-PNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSI  256 (508)
Q Consensus       178 ~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i  256 (508)
                      +...+ ...+..+++|++|++++|.++ .            ++..+.  ++|+.|++++|.....|. +..+++|+.+.+
T Consensus       240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~------------ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L  303 (312)
T 1wwl_A          240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-Q------------VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSL  303 (312)
T ss_dssp             CCSSCCCSCCCCCTTCCEEECTTSCCS-S------------CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEEC
T ss_pred             CCcccchhhhhhcCCCCEEECCCCccC-h------------hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEec
Confidence            54433 222567899999999999886 2            233344  789999999999877766 778888888877


Q ss_pred             Ee
Q 047733          257 LI  258 (508)
Q Consensus       257 ~~  258 (508)
                      .+
T Consensus       304 ~~  305 (312)
T 1wwl_A          304 KG  305 (312)
T ss_dssp             TT
T ss_pred             cC
Confidence            53

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=3.5e-15  Score=155.11  Aligned_cols=173  Identities=24%  Similarity=0.364  Sum_probs=145.5

Q ss_pred             CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      .++.++.|++.+|.+..++.+..+++|+.|++++|.            +..++.  +..+++|+.|++++|.+..++ .+
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~------------l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l  105 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK------------LTDIKP--LTNLKNLGWLFLDENKIKDLS-SL  105 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC------------CCCCGG--GGGCTTCCEEECCSSCCCCCT-TS
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC------------CCCChh--hccCCCCCEEECcCCCCCCCh-hh
Confidence            467899999999999988887799999999999843            333343  478999999999999998876 58


Q ss_pred             ccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733          117 RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY  196 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  196 (508)
                      ..+++|+.|++++|.++.+..+..+++|+.|++++|.+..+ ..+..+++|+.|+|++|. +..+++  +..+++|+.|+
T Consensus       106 ~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~  181 (605)
T 1m9s_A          106 KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLY  181 (605)
T ss_dssp             TTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEE
T ss_pred             ccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEE
Confidence            89999999999999988877788999999999999988877 468899999999999987 666665  78999999999


Q ss_pred             eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC
Q 047733          197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP  242 (508)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  242 (508)
                      +++|.+.              .+..+..+++|+.|++++|.....|
T Consensus       182 Ls~N~i~--------------~l~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          182 LSKNHIS--------------DLRALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CCSSCCC--------------BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred             CcCCCCC--------------CChHHccCCCCCEEEccCCcCcCCc
Confidence            9999876              2245888999999999988754443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.62  E-value=4.5e-15  Score=137.61  Aligned_cols=155  Identities=19%  Similarity=0.304  Sum_probs=132.6

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      .+.++++.|++++|.+..++.  +..+++|++|++++|.            +..++...|..+++|++|++++|.++.++
T Consensus        32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   99 (251)
T 3m19_A           32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ------------LQTLSAGVFDDLTELGTLGLANNQLASLP   99 (251)
T ss_dssp             CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------------CCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred             CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc------------CCccCHhHhccCCcCCEEECCCCcccccC
Confidence            456789999999999987765  3489999999999943            33444455688999999999999999876


Q ss_pred             -hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccChhhhhcC
Q 047733          114 -SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISSL  189 (508)
Q Consensus       114 -~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  189 (508)
                       ..+..+++|++|++++|.++. + ..+..+++|++|++++|.++.+|. .+..+++|++|++++|. +..++...+..+
T Consensus       100 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l  178 (251)
T 3m19_A          100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRL  178 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred             hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCC
Confidence             567899999999999999988 4 557899999999999999998876 57899999999999987 777877558899


Q ss_pred             CCCcEEEeecCCCc
Q 047733          190 SQLEELYIGESPIM  203 (508)
Q Consensus       190 ~~L~~L~l~~~~~~  203 (508)
                      ++|+.|++++|.+.
T Consensus       179 ~~L~~L~l~~N~~~  192 (251)
T 3m19_A          179 GKLQTITLFGNQFD  192 (251)
T ss_dssp             TTCCEEECCSCCBC
T ss_pred             CCCCEEEeeCCcee
Confidence            99999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=2.1e-15  Score=134.34  Aligned_cols=127  Identities=19%  Similarity=0.274  Sum_probs=71.4

Q ss_pred             hCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceE
Q 047733           94 TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLL  170 (508)
Q Consensus        94 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L  170 (508)
                      ..+++|++|++++|.++.++ .+..+++|++|++++|.++.  +..++.+++|++|++++|.+. ..|..+..+++|++|
T Consensus        63 ~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A           63 EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI  141 (197)
T ss_dssp             GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred             hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence            45556666666666544433 35556666666666666554  455566666666666666555 244555666666666


Q ss_pred             eccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          171 DLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       171 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      ++++|..+..++.  +..+++|++|++++|.+..              +..+..+++|+.|+++++.
T Consensus       142 ~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~--------------~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          142 DLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD--------------YRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC--------------CTTGGGCSSCCEEEECBC-
T ss_pred             EccCCCCccccHh--hcCCCCCCEEECCCCCCcC--------------hHHhccCCCCCEEEeeCcc
Confidence            6666543444542  5566666666666655541              1245555666666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=1.3e-15  Score=140.29  Aligned_cols=183  Identities=13%  Similarity=0.155  Sum_probs=143.9

Q ss_pred             cCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCc-CCCCch-hhccCccccEE
Q 047733           48 NSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMH-LLPLPS-SLRLFQNLQTL  125 (508)
Q Consensus        48 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L  125 (508)
                      ...+..+|.  -.++|++|++.+|            .+..++...|.++++|++|++++|. ++.++. .|..+++|++|
T Consensus        20 c~~l~~ip~--~~~~l~~L~l~~n------------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L   85 (239)
T 2xwt_C           20 CKDIQRIPS--LPPSTQTLKLIET------------HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI   85 (239)
T ss_dssp             ECSCSSCCC--CCTTCCEEEEESC------------CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEE
T ss_pred             ccCccccCC--CCCcccEEEEeCC------------cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEE
Confidence            333677777  3458999999983            4445555556889999999999997 887774 78899999999


Q ss_pred             eccC-CCCCC-c-cccCCCCCCcEEEccCCCchhhHHHhccCCCCc---eEeccCCCCCCccChhhhhcCCCCc-EEEee
Q 047733          126 SLDY-CELGD-I-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLR---LLDLSNCFNLKVIPPNVISSLSQLE-ELYIG  198 (508)
Q Consensus       126 ~l~~-~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~  198 (508)
                      ++++ |.++. + ..+..+++|++|++++|.++.+|. +..+++|+   +|++++|..+..++...+..+++|+ .|+++
T Consensus        86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C           86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred             ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence            9998 77887 4 678899999999999999998886 77888888   9999998448888876678999999 99999


Q ss_pred             cCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc-CccCCC-CCccC-CCccEEEEEe
Q 047733          199 ESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED-EKTLPR-DLSFF-KMLQRYSILI  258 (508)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~l~~~-~~L~~L~i~~  258 (508)
                      +|.++.             +.......++|+.|+++++. ...++. .+..+ ++|+.+.+..
T Consensus       165 ~n~l~~-------------i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          165 NNGFTS-------------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             SCCCCE-------------ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             CCCCcc-------------cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence            988762             11222222689999999994 666654 45667 8888887753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=1.6e-15  Score=141.50  Aligned_cols=171  Identities=20%  Similarity=0.242  Sum_probs=134.8

Q ss_pred             CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733           38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR  117 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  117 (508)
                      +.++.++++..+.+.+++....+++|++|++.+|.            +..++ . +..+++|++|++++|.++.++. +.
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~------------i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~   82 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN------------IQSLA-G-MQFFTNLKELHLSHNQISDLSP-LK   82 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSC------------CCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCC------------cccch-H-HhhCCCCCEEECCCCccCCChh-hc
Confidence            45677788888888887766688999999998843            33344 2 4788999999999999988877 88


Q ss_pred             cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      .+++|++|++++|+++....+.. .+|++|++++|.++.++ .+..+++|++|++++|. +..++.  +..+++|+.|++
T Consensus        83 ~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L  157 (263)
T 1xeu_A           83 DLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDL  157 (263)
T ss_dssp             TCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEEC
T ss_pred             cCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEEC
Confidence            89999999999999887433444 89999999999888776 58889999999999987 777764  788999999999


Q ss_pred             ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC
Q 047733          198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP  242 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  242 (508)
                      ++|.+..              ...+..+++|+.|+++++.....|
T Consensus       158 ~~N~i~~--------------~~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          158 HGNEITN--------------TGGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TTSCCCB--------------CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCCcCcc--------------hHHhccCCCCCEEeCCCCcccCCc
Confidence            9888761              155777888999999888754443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=5.3e-15  Score=133.00  Aligned_cols=147  Identities=22%  Similarity=0.371  Sum_probs=93.7

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-hhccCc
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQ  120 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~  120 (508)
                      +.++..++.+..+|.. ..++|++|++.+|            .+..++..+|..+++|++|++++|.++.++. .+..++
T Consensus        10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG-IPAQTTYLDLETN------------SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT   76 (208)
T ss_dssp             TEEECCSSCCSSCCSC-CCTTCSEEECCSS------------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CEEEecCCCccCCCCC-CCCCCcEEEcCCC------------ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC
Confidence            3555555655555542 2456777777762            2333444445667777777777777766553 356677


Q ss_pred             cccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          121 NLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       121 ~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      +|++|++++|.++. + ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..++...+..+++|++|++
T Consensus        77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEe
Confidence            77777777777666 3 4456777777777777777666543 5667777777777765 55666544566777777777


Q ss_pred             ecCCC
Q 047733          198 GESPI  202 (508)
Q Consensus       198 ~~~~~  202 (508)
                      ++|.+
T Consensus       156 ~~N~~  160 (208)
T 2o6s_A          156 HDNPW  160 (208)
T ss_dssp             CSCCB
T ss_pred             cCCCe
Confidence            77654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.58  E-value=1.3e-14  Score=129.26  Aligned_cols=149  Identities=17%  Similarity=0.228  Sum_probs=117.2

Q ss_pred             CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-Cchh
Q 047733           37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LPSS  115 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~  115 (508)
                      .++++++|++++|.+..++.+..+++|++|++.+|.            ...++ . +..+++|++|++++|.++. .+..
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~------------~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~  107 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH------------ATNYN-P-ISGLSNLERLRIMGKDVTSDKIPN  107 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC------------CSCCG-G-GTTCTTCCEEEEECTTCBGGGSCC
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCC------------CCcch-h-hhcCCCCCEEEeECCccCcccChh
Confidence            457788999999888888866688899999998832            22222 2 4778899999999988874 6677


Q ss_pred             hccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCC-chhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCC
Q 047733          116 LRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSD-MEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL  192 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  192 (508)
                      ++.+++|++|++++|.+++  +..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++.  +..+++|
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L  183 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKL  183 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSC
T ss_pred             hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCC
Confidence            8888899999999988876  6778888999999999986 77777 67888899999998887 666663  6888999


Q ss_pred             cEEEeecCCCc
Q 047733          193 EELYIGESPIM  203 (508)
Q Consensus       193 ~~L~l~~~~~~  203 (508)
                      ++|++++|.+.
T Consensus       184 ~~L~l~~N~i~  194 (197)
T 4ezg_A          184 NQLYAFSQTIG  194 (197)
T ss_dssp             CEEEECBC---
T ss_pred             CEEEeeCcccC
Confidence            99998887653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=1e-14  Score=139.75  Aligned_cols=218  Identities=15%  Similarity=0.111  Sum_probs=106.8

Q ss_pred             cccEEEeecCCCCC--CC---CCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhh-hCCCCccEEEecCCcCCC-C
Q 047733           40 VCTAISLKNSNISE--LP---QVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFF-TGMRELRVLDFARMHLLP-L  112 (508)
Q Consensus        40 ~lr~L~l~~~~~~~--l~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-l  112 (508)
                      .++++.+..+.+..  +.   ....+++|++|++.+|.+           ....|..++ ..+++|++|++++|.++. .
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-----------~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~  133 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-----------TGTMPPLPLEATGLALSSLRLRNVSWATGR  133 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-----------BSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-----------ccchhhhhhhccCCCCCEEEeecccccchh
Confidence            35566666555421  11   111345566666666322           222222222 456666666666666553 1


Q ss_pred             c----hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchh---hHHH--hccCCCCceEeccCCCCCCcc
Q 047733          113 P----SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEK---LVEE--IGQLTHLRLLDLSNCFNLKVI  181 (508)
Q Consensus       113 ~----~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~---lp~~--~~~l~~L~~L~l~~~~~~~~~  181 (508)
                      +    ..+..+++|++|++++|.++.  +..++.+++|++|++++|.+..   ++..  +..+++|++|++++|. ++.+
T Consensus       134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l  212 (310)
T 4glp_A          134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METP  212 (310)
T ss_dssp             SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCH
T ss_pred             hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCch
Confidence            1    223346666666666666554  2556666666666666665432   3222  2456666666666655 4433


Q ss_pred             Chh---hhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEe
Q 047733          182 PPN---VISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILI  258 (508)
Q Consensus       182 ~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~  258 (508)
                      +..   .+..+++|++|++++|.+....+         ..+..+..+++|+.|++++|....+|..+  .++|+.|+++.
T Consensus       213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p---------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~  281 (310)
T 4glp_A          213 TGVCAALAAAGVQPHSLDLSHNSLRATVN---------PSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSS  281 (310)
T ss_dssp             HHHHHHHHHHTCCCSSEECTTSCCCCCCC---------SCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCS
T ss_pred             HHHHHHHHhcCCCCCEEECCCCCCCccch---------hhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCC
Confidence            321   23455666666666665542211         01111222246666666666655555554  25666666654


Q ss_pred             cCcccCCCCCCCccceeeEEecc
Q 047733          259 GDQWAWDSPSDDISGIFQLTVAS  281 (508)
Q Consensus       259 ~~~~~~~~~~~~~~~l~~l~L~~  281 (508)
                      +..... +....+++|+.+.+..
T Consensus       282 N~l~~~-~~~~~l~~L~~L~L~~  303 (310)
T 4glp_A          282 NRLNRA-PQPDELPEVDNLTLDG  303 (310)
T ss_dssp             CCCCSC-CCTTSCCCCSCEECSS
T ss_pred             CcCCCC-chhhhCCCccEEECcC
Confidence            432222 2233444454444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=2e-15  Score=153.68  Aligned_cols=189  Identities=12%  Similarity=0.129  Sum_probs=154.7

Q ss_pred             cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733           36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS  115 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  115 (508)
                      ..+++++.|++++|.+.+.+++..+++|++|++++|.+..++                 ..++|++|++++|.++.++. 
T Consensus        55 ~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-----------------~~~~L~~L~L~~N~l~~~~~-  116 (487)
T 3oja_A           55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----------------VGPSIETLHAANNNISRVSC-  116 (487)
T ss_dssp             TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-----------------ECTTCCEEECCSSCCCCEEE-
T ss_pred             hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-----------------CCCCcCEEECcCCcCCCCCc-
Confidence            356889999999999976666779999999999995443332                 23789999999999987764 


Q ss_pred             hccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchh-hHHHhc-cCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733          116 LRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEK-LVEEIG-QLTHLRLLDLSNCFNLKVIPPNVISSLSQ  191 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~-lp~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  191 (508)
                       ..+++|++|++++|.++.  +..++.+++|++|++++|.+.. .|..+. .+++|++|++++|. +..++.  ...+++
T Consensus       117 -~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~--~~~l~~  192 (487)
T 3oja_A          117 -SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG--QVVFAK  192 (487)
T ss_dssp             -CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC--CCCCTT
T ss_pred             -cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc--cccCCC
Confidence             356889999999999887  4678899999999999998885 455554 78999999999988 767765  457999


Q ss_pred             CcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEec
Q 047733          192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIG  259 (508)
Q Consensus       192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~  259 (508)
                      |+.|++++|.++.             ++..+..+++|+.|++++|....+|..+..+++|+.+.+.++
T Consensus       193 L~~L~Ls~N~l~~-------------~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          193 LKTLDLSSNKLAF-------------MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             CCEEECCSSCCCE-------------ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred             CCEEECCCCCCCC-------------CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence            9999999998872             334577889999999999998888888888889988877543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.57  E-value=3e-15  Score=155.60  Aligned_cols=188  Identities=21%  Similarity=0.217  Sum_probs=155.4

Q ss_pred             CcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhcc
Q 047733           39 KVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRL  118 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~  118 (508)
                      ..+.++.+..+.+.++.....+++|+.|++.+|.            +..++.  +..+++|+.|++++|.+..++. +..
T Consensus        21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~------------i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~   85 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD------------IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTN   85 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCC------------CCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGG
T ss_pred             HHHHHHhccCCCcccccchhcCCCCCEEECcCCC------------CCCChH--HccCCCCCEEEeeCCCCCCChh-hcc
Confidence            3455666666666666665688999999999843            333442  4789999999999999998877 899


Q ss_pred             CccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733          119 FQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG  198 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  198 (508)
                      +++|+.|++++|.++.+..+..+++|++|++++|.+..++ .+..+++|+.|++++|. +..++.  +..+++|+.|+++
T Consensus        86 l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLE  161 (605)
T ss_dssp             CTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECC
T ss_pred             CCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECc
Confidence            9999999999999998778999999999999999998875 58899999999999987 666643  7999999999999


Q ss_pred             cCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733          199 ESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD  260 (508)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~  260 (508)
                      +|.+...              ..+..+++|+.|++++|....++ .+..+++|+.|.+..+.
T Consensus       162 ~N~l~~~--------------~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          162 DNQISDI--------------VPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             SSCCCCC--------------GGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred             CCcCCCc--------------hhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence            9987622              22888999999999999877664 56789999999987554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.56  E-value=3.6e-14  Score=129.45  Aligned_cols=149  Identities=22%  Similarity=0.291  Sum_probs=121.7

Q ss_pred             ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccC
Q 047733           41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLF  119 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l  119 (508)
                      .+.++.+++.+..+|... .++|++|++++|            .+..++...|..+++|++|++++|.++.+| ..+..+
T Consensus        21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l   87 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDN------------QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL   87 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCEeEccCCCcCccCCCC-CCCCCEEEcCCC------------ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence            457888888888888643 488999999983            333343344588999999999999998877 456889


Q ss_pred             ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      ++|++|++++|.++. + ..+..+++|++|++++|.++.+|..+..+++|++|++++|. +..++...+..+++|+.|++
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence            999999999999887 4 55788999999999999999998888999999999999987 77777655788899999999


Q ss_pred             ecCCCc
Q 047733          198 GESPIM  203 (508)
Q Consensus       198 ~~~~~~  203 (508)
                      .+|.+.
T Consensus       167 ~~N~~~  172 (229)
T 3e6j_A          167 FGNPWD  172 (229)
T ss_dssp             TTSCBC
T ss_pred             eCCCcc
Confidence            888765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=2.4e-15  Score=145.86  Aligned_cols=103  Identities=19%  Similarity=0.226  Sum_probs=50.0

Q ss_pred             CCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEec
Q 047733           97 RELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDL  172 (508)
Q Consensus        97 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l  172 (508)
                      +++++|++++|.+...+..+.++++|++|++++|.+++   +..+..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            45555555555554433334445555555555555442   234445555555555555444 34444555555555555


Q ss_pred             cCCCCCCc--cChhhhhcCCCCcEEEeecC
Q 047733          173 SNCFNLKV--IPPNVISSLSQLEELYIGES  200 (508)
Q Consensus       173 ~~~~~~~~--~~~~~l~~l~~L~~L~l~~~  200 (508)
                      ++|..++.  ++.. +..+++|++|++++|
T Consensus       150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          150 SGCSGFSEFALQTL-LSSCSRLDELNLSWC  178 (336)
T ss_dssp             TTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred             CCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence            55532332  2221 445555555555555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.55  E-value=8.1e-15  Score=140.45  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=35.4

Q ss_pred             CCccEEEecCCcCC-CCchhh--ccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCchhhH-HHhccCCC
Q 047733           97 RELRVLDFARMHLL-PLPSSL--RLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDMEKLV-EEIGQLTH  166 (508)
Q Consensus        97 ~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~  166 (508)
                      .+|++|++++|.+. ..|..+  ..+++|++|++++|.++.  +    ..+..+++|++|++++|.+..++ ..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            33555555555443 233333  444455555555544432  1    12233445555555555444332 23444445


Q ss_pred             CceEeccCCC
Q 047733          167 LRLLDLSNCF  176 (508)
Q Consensus       167 L~~L~l~~~~  176 (508)
                      |++|++++|.
T Consensus       171 L~~L~Ls~N~  180 (310)
T 4glp_A          171 LTSLDLSDNP  180 (310)
T ss_dssp             CCEEECCSCT
T ss_pred             CCEEECCCCC
Confidence            5555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.55  E-value=8.9e-16  Score=151.98  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=51.2

Q ss_pred             hCCCCccEEEecCCcCCC-----CchhhccCccccEEeccCCCCCC--ccccC----CC---------CCCcEEEccCCC
Q 047733           94 TGMRELRVLDFARMHLLP-----LPSSLRLFQNLQTLSLDYCELGD--IAIVG----DL---------KTLVILTLRGSD  153 (508)
Q Consensus        94 ~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~l~~--~~~i~----~l---------~~L~~L~l~~~~  153 (508)
                      ..+++|++|++++|.++.     ++..+..+++|++|++++|.++.  +..+.    .+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            445555555555555543     44445555555555555555442  12222    22         555555555554


Q ss_pred             ch--hhH---HHhccCCCCceEeccCCCCCCc-----cChhhhhcCCCCcEEEeecCCC
Q 047733          154 ME--KLV---EEIGQLTHLRLLDLSNCFNLKV-----IPPNVISSLSQLEELYIGESPI  202 (508)
Q Consensus       154 i~--~lp---~~~~~l~~L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~  202 (508)
                      +.  .++   ..+..+++|++|++++|. +..     +.+..+..+++|++|++++|.+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l  228 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTF  228 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence            43  232   334455555555555554 321     1110134555555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=1.5e-13  Score=133.85  Aligned_cols=102  Identities=16%  Similarity=0.076  Sum_probs=74.2

Q ss_pred             cceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCccc
Q 047733          296 KGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLA  375 (508)
Q Consensus       296 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~  375 (508)
                      ..++.|++.+. .++.+....  ....+|+++.+.+++.++.+..+      ....+++|+.|+++++ +++.++     
T Consensus       154 ~~l~~L~L~~N-~i~~i~~~~--f~~~~L~~l~l~~~n~l~~i~~~------~f~~l~~L~~LdLs~N-~l~~lp-----  218 (350)
T 4ay9_X          154 FESVILWLNKN-GIQEIHNSA--FNGTQLDELNLSDNNNLEELPND------VFHGASGPVILDISRT-RIHSLP-----  218 (350)
T ss_dssp             SSCEEEECCSS-CCCEECTTS--STTEEEEEEECTTCTTCCCCCTT------TTTTEECCSEEECTTS-CCCCCC-----
T ss_pred             hhhhhhccccc-cccCCChhh--ccccchhHHhhccCCcccCCCHH------HhccCcccchhhcCCC-CcCccC-----
Confidence            46788888664 555554332  23567899999888888776421      1246789999999985 566653     


Q ss_pred             ccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecc
Q 047733          376 AESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTE  415 (508)
Q Consensus       376 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~  415 (508)
                      ...+.+|+.|.+.++..++.+|.   ...+++|+.+++..
T Consensus       219 ~~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          219 SYGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY  255 (350)
T ss_dssp             SSSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred             hhhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence            35578999999999999999876   37799999999864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.54  E-value=7.5e-15  Score=142.40  Aligned_cols=150  Identities=17%  Similarity=0.244  Sum_probs=72.3

Q ss_pred             CcccEEEeecCCCCCC-CCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCC-CChhhhhCCCCccEEEecCCcCC-CCchh
Q 047733           39 KVCTAISLKNSNISEL-PQVFECPQLKYFHIANDPSRRIPVHIANDPSRR-IPDKFFTGMRELRVLDFARMHLL-PLPSS  115 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~l~~~  115 (508)
                      ++++.+++.++.+.+. +....+++|++|++++|           ..... ++ .++..+++|++|++++|.++ ..+..
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-----------~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~  137 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-----------VIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNT  137 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-----------EECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHH
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCC-----------CcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHH
Confidence            4455555555555332 22335555555555551           11111 12 22345555555555555554 34444


Q ss_pred             hccCccccEEeccCC-CCCC---ccccCCCCCCcEEEccCC-Cchh--hHHHhccCC-CCceEeccCCC-CCC--ccChh
Q 047733          116 LRLFQNLQTLSLDYC-ELGD---IAIVGDLKTLVILTLRGS-DMEK--LVEEIGQLT-HLRLLDLSNCF-NLK--VIPPN  184 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~-~l~~---~~~i~~l~~L~~L~l~~~-~i~~--lp~~~~~l~-~L~~L~l~~~~-~~~--~~~~~  184 (508)
                      ++.+++|++|++++| .+++   +..+..+++|++|++++| .++.  ++..+..++ +|++|++++|. .+.  .++..
T Consensus       138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~  217 (336)
T 2ast_B          138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL  217 (336)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred             HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence            555555555555555 3443   233445555555555555 5542  444455555 55555555552 121  12222


Q ss_pred             hhhcCCCCcEEEeecCC
Q 047733          185 VISSLSQLEELYIGESP  201 (508)
Q Consensus       185 ~l~~l~~L~~L~l~~~~  201 (508)
                       +..+++|++|++++|.
T Consensus       218 -~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          218 -VRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             -HHHCTTCSEEECTTCT
T ss_pred             -HhhCCCCCEEeCCCCC
Confidence             4455555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=5.1e-14  Score=131.28  Aligned_cols=147  Identities=24%  Similarity=0.299  Sum_probs=127.7

Q ss_pred             CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      .+++++.|++++|.+..++.+..+++|++|++++|.            +..++.  +.++++|++|++++|.++.++...
T Consensus        39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~------------i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~  104 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ------------ISDLSP--LKDLTKLEELSVNRNRLKNLNGIP  104 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC------------CCCCGG--GTTCSSCCEEECCSSCCSCCTTCC
T ss_pred             hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc------------cCCChh--hccCCCCCEEECCCCccCCcCccc
Confidence            467899999999999999877799999999999943            344444  589999999999999999887643


Q ss_pred             ccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733          117 RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY  196 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  196 (508)
                      .  ++|++|++++|.++.+..++.+++|++|++++|.++.++ .+..+++|++|++++|. +..+..  +..+++|+.|+
T Consensus       105 ~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~  178 (263)
T 1xeu_A          105 S--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWID  178 (263)
T ss_dssp             C--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEE
T ss_pred             c--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEe
Confidence            3  899999999999998667999999999999999999887 68899999999999988 666633  78999999999


Q ss_pred             eecCCCc
Q 047733          197 IGESPIM  203 (508)
Q Consensus       197 l~~~~~~  203 (508)
                      +++|.+.
T Consensus       179 l~~N~~~  185 (263)
T 1xeu_A          179 LTGQKCV  185 (263)
T ss_dssp             EEEEEEE
T ss_pred             CCCCccc
Confidence            9998775

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.53  E-value=4.9e-14  Score=127.71  Aligned_cols=148  Identities=19%  Similarity=0.378  Sum_probs=110.8

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccCc
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQ  120 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~  120 (508)
                      +.++.+++.+..+|... .++|+.|++.+|.            +..++...|..+++|++|++++|.++.+ |..|..++
T Consensus        14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~------------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~   80 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNT------------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR   80 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-CTTCCEEECCSSC------------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS
T ss_pred             CEEEcCCCCcCcCCCcc-CcCCCEEECCCCc------------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc
Confidence            56777788887777643 2688888888833            3344444457788888888888888765 67788888


Q ss_pred             cccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          121 NLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       121 ~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      +|++|++++|.++. + ..+..+++|++|++++|.++.++ ..+..+++|++|++++|. +..++...+..+++|+.|++
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEe
Confidence            88888888888877 4 45677888888888888887663 557788888888888877 66676655677888888888


Q ss_pred             ecCCCc
Q 047733          198 GESPIM  203 (508)
Q Consensus       198 ~~~~~~  203 (508)
                      ++|.+.
T Consensus       160 ~~N~~~  165 (220)
T 2v9t_B          160 AQNPFI  165 (220)
T ss_dssp             CSSCEE
T ss_pred             CCCCcC
Confidence            877654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=1.1e-13  Score=142.29  Aligned_cols=176  Identities=19%  Similarity=0.201  Sum_probs=142.1

Q ss_pred             cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccC
Q 047733           40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLF  119 (508)
Q Consensus        40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l  119 (508)
                      +++.|++++|.+.++|... +++|++|++++|.+            ..+|    ..+++|++|++++|.++.+|. +.. 
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l------------~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~-  120 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL------------ISLP----ELPASLEYLDACDNRLSTLPE-LPA-  120 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC------------SCCC----CCCTTCCEEECCSSCCSCCCC-CCT-
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC------------cccc----cccCCCCEEEccCCCCCCcch-hhc-
Confidence            7899999999998888744 48999999999443            3445    246899999999999998888 665 


Q ss_pred             ccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733          120 QNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG  198 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  198 (508)
                       +|++|++++|.++. |.   .+++|++|++++|.++.+|.   .+++|++|++++|. +..+|.  +.  ++|+.|+++
T Consensus       121 -~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls  188 (571)
T 3cvr_A          121 -SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVS  188 (571)
T ss_dssp             -TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECC
T ss_pred             -CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECc
Confidence             89999999999888 45   68999999999999988875   67899999999987 777877  44  899999999


Q ss_pred             cCCCccccccCcCCCCcccchhhccC-----CCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733          199 ESPIMWGKVGGVDGEGRNASLDELNN-----LSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD  260 (508)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~  260 (508)
                      +|.++ .            ++. +..     .+.|+.|++++|....+|..+..+++|+.|.+..+.
T Consensus       189 ~N~L~-~------------lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          189 TNLLE-S------------LPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             SSCCS-S------------CCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             CCCCC-c------------hhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence            99876 1            112 222     223399999999988999988789999999886544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=7.4e-14  Score=126.49  Aligned_cols=149  Identities=17%  Similarity=0.300  Sum_probs=114.9

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-hhccCc
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQ  120 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~  120 (508)
                      +.++++++.+..+|... .+.++.|++.+|.+..+           .+..+|..+++|++|++++|.++.++. .|..++
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~-----------~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~   81 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVL-----------EATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS   81 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEE-----------CCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCcc-----------CchhhhccCCCCCEEECCCCcCCEECHHHhCCCC
Confidence            57888888888887633 45678899988433322           133445788999999999999887654 788899


Q ss_pred             cccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          121 NLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       121 ~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      +|++|++++|.++. + ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|+.|++
T Consensus        82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A           82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEe
Confidence            99999999998887 3 5688899999999999988866 4567788899999998877 66665444788888888888


Q ss_pred             ecCCCc
Q 047733          198 GESPIM  203 (508)
Q Consensus       198 ~~~~~~  203 (508)
                      ++|.+.
T Consensus       161 ~~N~l~  166 (220)
T 2v70_A          161 LANPFN  166 (220)
T ss_dssp             CSCCEE
T ss_pred             cCcCCc
Confidence            888765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.51  E-value=5.1e-14  Score=126.49  Aligned_cols=151  Identities=17%  Similarity=0.203  Sum_probs=125.2

Q ss_pred             cCCCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      ...+++++|++++|.+..++..  ..+++|++|++.+|            .+..++...|..+++|++|++++|.++.++
T Consensus        25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   92 (208)
T 2o6s_A           25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN------------KLQSLPNGVFNKLTSLTYLNLSTNQLQSLP   92 (208)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC------------ccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence            4567899999999999888763  38999999999994            344556566689999999999999999877


Q ss_pred             h-hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcC
Q 047733          114 S-SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSL  189 (508)
Q Consensus       114 ~-~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  189 (508)
                      . .+..+++|++|++++|.++. + ..+..+++|++|++++|.++.++.. +..+++|++|++++|..        .+.+
T Consensus        93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~  164 (208)
T 2o6s_A           93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTC  164 (208)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCT
T ss_pred             HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCC
Confidence            5 47899999999999999887 4 5588999999999999999877755 67899999999999852        2456


Q ss_pred             CCCcEEEeecCCCcccc
Q 047733          190 SQLEELYIGESPIMWGK  206 (508)
Q Consensus       190 ~~L~~L~l~~~~~~~~~  206 (508)
                      ++|+.|++..+.+++..
T Consensus       165 ~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          165 PGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             TTTHHHHHHHHHCTTTB
T ss_pred             CCHHHHHHHHHhCCcee
Confidence            78888888887776443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=7e-15  Score=145.53  Aligned_cols=63  Identities=19%  Similarity=0.095  Sum_probs=34.1

Q ss_pred             cccceeEEEecCCCCccccc-----cCCcCCCCCCCcEEEEecCCCcee-----eeecccCCCCCCCcCcCcceeeccCc
Q 047733          294 QLKGIKELCLGGSLDMKSVL-----YGSHGEGFPQLKHLEVVENSNLLC-----VVDTVDRATAPTTAFPVLESLFLRDL  363 (508)
Q Consensus       294 ~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~~~~~~~~~~~~p~L~~L~l~~c  363 (508)
                      .+++|++|++.++. ++...     ..+....+++|++|++++|. ++.     ++..      ....+|+|+.|++.++
T Consensus       242 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~------l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          242 SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTV------IDEKMPDLLFLELNGN  313 (386)
T ss_dssp             GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHH------HHHHCTTCCEEECTTS
T ss_pred             cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHH------HHhcCCCceEEEccCC
Confidence            45677777776664 33221     11111336778888887753 332     1110      0123688888888886


Q ss_pred             c
Q 047733          364 R  364 (508)
Q Consensus       364 ~  364 (508)
                      +
T Consensus       314 ~  314 (386)
T 2ca6_A          314 R  314 (386)
T ss_dssp             B
T ss_pred             c
Confidence            5

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.48  E-value=1.9e-13  Score=133.18  Aligned_cols=196  Identities=15%  Similarity=0.108  Sum_probs=127.8

Q ss_pred             cCCCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccE-EEecCCcCCCC
Q 047733           36 DALKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV-LDFARMHLLPL  112 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~~~~l  112 (508)
                      ++++++++|++++|.+..++..  .++++|++|++++|.+           ...++..+|.++.+++. +.+.+|++..+
T Consensus        27 ~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i-----------~~~i~~~~f~~L~~l~~~l~~~~N~l~~l   95 (350)
T 4ay9_X           27 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-----------LEVIEADVFSNLPKLHEIRIEKANNLLYI   95 (350)
T ss_dssp             TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT-----------CCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred             CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC-----------CCccChhHhhcchhhhhhhcccCCccccc
Confidence            4667899999999999888763  4899999999998432           33445555667766554 55566777765


Q ss_pred             c-hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccC-CCchhhHHH-hccC-CCCceEeccCCCCCCccChhhh
Q 047733          113 P-SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRG-SDMEKLVEE-IGQL-THLRLLDLSNCFNLKVIPPNVI  186 (508)
Q Consensus       113 ~-~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~-~~i~~lp~~-~~~l-~~L~~L~l~~~~~~~~~~~~~l  186 (508)
                      + ..|..+++|++|++++|.++. + ..+....++..|++.+ +.+..++.. +..+ ..++.|++++|. ++.++.. .
T Consensus        96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~-~  173 (350)
T 4ay9_X           96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS-A  173 (350)
T ss_dssp             CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-S
T ss_pred             CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-h
Confidence            4 567778888888888887766 3 3444556677777755 356655533 3343 357777877766 6677765 3


Q ss_pred             hcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEE
Q 047733          187 SSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSIL  257 (508)
Q Consensus       187 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  257 (508)
                      ....+|++|.+..++.....+           ...++.+++|+.|++++|....+|..  .+.+|+.|...
T Consensus       174 f~~~~L~~l~l~~~n~l~~i~-----------~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l  231 (350)
T 4ay9_X          174 FNGTQLDELNLSDNNNLEELP-----------NDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRAR  231 (350)
T ss_dssp             STTEEEEEEECTTCTTCCCCC-----------TTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECT
T ss_pred             ccccchhHHhhccCCcccCCC-----------HHHhccCcccchhhcCCCCcCccChh--hhccchHhhhc
Confidence            455677777776533321111           12356677788888888777777664  35556665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.47  E-value=1.1e-13  Score=135.38  Aligned_cols=148  Identities=18%  Similarity=0.270  Sum_probs=77.9

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhh-CCCCccEEEecCCcCCCCc-hhhccC
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFT-GMRELRVLDFARMHLLPLP-SSLRLF  119 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l  119 (508)
                      +.++.+++.+..+|... .+.++.|++++|.            +..++...|. ++.+|++|++++|.++.++ ..|..+
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~------------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l   87 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNN------------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV   87 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSC------------CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCC------------CCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence            35555555555555422 2345566665522            2223333233 5566666666666665544 345556


Q ss_pred             ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCccChhhh---hcCCCCc
Q 047733          120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVI---SSLSQLE  193 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~  193 (508)
                      ++|++|++++|+++. + ..+..+.+|++|++++|.+..+ |..+..+++|++|++++|. +..++...+   ..+++|+
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCC
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCC
Confidence            666666666666554 2 3455566666666666655544 3345556666666666654 555554422   3456666


Q ss_pred             EEEeecCCCc
Q 047733          194 ELYIGESPIM  203 (508)
Q Consensus       194 ~L~l~~~~~~  203 (508)
                      .|++++|.+.
T Consensus       167 ~L~L~~N~l~  176 (361)
T 2xot_A          167 LLDLSSNKLK  176 (361)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCCCC
Confidence            6666665554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=8.5e-14  Score=136.38  Aligned_cols=203  Identities=12%  Similarity=0.147  Sum_probs=142.6

Q ss_pred             CCCcccEEEeecCCCCCCCC------CCCCC-CCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCC-----CCccEEEe
Q 047733           37 ALKVCTAISLKNSNISELPQ------VFECP-QLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGM-----RELRVLDF  104 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~------~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l  104 (508)
                      ..+++++|++++|.+.+.+.      +..++ +|++|++++|.+            .......+..+     ++|++|++
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l------------~~~~~~~l~~~l~~~~~~L~~L~L   87 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL------------GFKNSDELVQILAAIPANVTSLNL   87 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG------------GGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC------------CHHHHHHHHHHHhccCCCccEEEC
Confidence            35669999999999976653      22777 899999999433            22222222332     89999999


Q ss_pred             cCCcCCCCc-hh----hccC-ccccEEeccCCCCCC--ccc----cCC-CCCCcEEEccCCCch-----hhHHHhccCC-
Q 047733          105 ARMHLLPLP-SS----LRLF-QNLQTLSLDYCELGD--IAI----VGD-LKTLVILTLRGSDME-----KLVEEIGQLT-  165 (508)
Q Consensus       105 ~~~~~~~l~-~~----~~~l-~~L~~L~l~~~~l~~--~~~----i~~-l~~L~~L~l~~~~i~-----~lp~~~~~l~-  165 (508)
                      ++|.++..+ ..    +..+ ++|++|++++|.+++  +..    +.. ..+|++|++++|.+.     .++..+..++ 
T Consensus        88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~  167 (362)
T 3goz_A           88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA  167 (362)
T ss_dssp             CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred             cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence            999987533 33    4444 799999999999876  233    344 369999999999887     6667777776 


Q ss_pred             CCceEeccCCCCCCccChh----hhhcC-CCCcEEEeecCCCccccccCcCCCCcccchhhccC-CCCccEEEEecccCc
Q 047733          166 HLRLLDLSNCFNLKVIPPN----VISSL-SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-LSKLTSLEILIEDEK  239 (508)
Q Consensus       166 ~L~~L~l~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~  239 (508)
                      +|++|++++|. +......    .+..+ ++|++|++++|.+...        ....+...+.. .++|+.|++++|...
T Consensus       168 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          168 NVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLK--------SYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             TCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS--------CHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             cccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChh--------HHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            99999999987 5555432    23445 5999999999987622        12234455555 358999999998855


Q ss_pred             cCC-----CCCccCCCccEEEEEecC
Q 047733          240 TLP-----RDLSFFKMLQRYSILIGD  260 (508)
Q Consensus       240 ~~~-----~~l~~~~~L~~L~i~~~~  260 (508)
                      ..+     ..+..+++|+.|.+..+.
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCC
Confidence            443     233667888988887554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=2.3e-13  Score=117.68  Aligned_cols=138  Identities=22%  Similarity=0.144  Sum_probs=89.4

Q ss_pred             CCCccEEEecCCcCC--CCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchh-hHHHhccCCCCceEec
Q 047733           96 MRELRVLDFARMHLL--PLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEK-LVEEIGQLTHLRLLDL  172 (508)
Q Consensus        96 l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l  172 (508)
                      .++|++|++++|.++  .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..+..+++|++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            466777777777776  6666667777777777777776665666677777777777777665 5655666777777777


Q ss_pred             cCCCCCCccCh-hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC
Q 047733          173 SNCFNLKVIPP-NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR  243 (508)
Q Consensus       173 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  243 (508)
                      ++|. +..++. ..+..+++|++|++++|.++....         .....+..+++|+.|++.++.....|.
T Consensus       103 s~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~---------~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          103 SGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLND---------YRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             BSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTT---------HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             cCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHH---------HHHHHHHhCccCcEecCCCCChhhccc
Confidence            7765 555542 225677777777777776542110         001246667777777777766555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.46  E-value=8.4e-14  Score=136.40  Aligned_cols=109  Identities=14%  Similarity=0.177  Sum_probs=50.2

Q ss_pred             hCCC-CccEEEecCCcCCCC-chhhccC-----ccccEEeccCCCCCC--ccc----cCCC-CCCcEEEccCCCchhhH-
Q 047733           94 TGMR-ELRVLDFARMHLLPL-PSSLRLF-----QNLQTLSLDYCELGD--IAI----VGDL-KTLVILTLRGSDMEKLV-  158 (508)
Q Consensus        94 ~~l~-~L~~L~l~~~~~~~l-~~~~~~l-----~~L~~L~l~~~~l~~--~~~----i~~l-~~L~~L~l~~~~i~~lp-  158 (508)
                      ..++ +|++|++++|.++.. +..+..+     ++|++|++++|.+++  +..    +..+ ++|++|++++|.++..+ 
T Consensus        47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            4455 566666666655432 3333333     556666666655543  121    2233 55566666555554222 


Q ss_pred             ----HHhcc-CCCCceEeccCCCCCCccChh----hhhcCC-CCcEEEeecCCCc
Q 047733          159 ----EEIGQ-LTHLRLLDLSNCFNLKVIPPN----VISSLS-QLEELYIGESPIM  203 (508)
Q Consensus       159 ----~~~~~-l~~L~~L~l~~~~~~~~~~~~----~l~~l~-~L~~L~l~~~~~~  203 (508)
                          ..+.. .++|++|++++|. ++.....    .+..++ +|++|++++|.+.
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence                11222 2455555555554 3321110    123333 5555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.45  E-value=4.2e-13  Score=121.51  Aligned_cols=128  Identities=14%  Similarity=0.254  Sum_probs=92.0

Q ss_pred             CCccEEEecCCcCCCCch-hhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEec
Q 047733           97 RELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDL  172 (508)
Q Consensus        97 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l  172 (508)
                      .+++.|++++|.++.++. .|..+++|++|++++|.++.  +..+.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            567888888888876653 67778888888888888776  46777888888888888887777654 467788888888


Q ss_pred             cCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          173 SNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       173 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      ++|. +..+++..+..+++|++|++++|.++...            ...+..+++|+.|++++|.
T Consensus       112 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          112 NANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIA------------KGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCTTCCEEECCSSC
T ss_pred             CCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEEC------------HHHHhCCCCCCEEEeCCCC
Confidence            8876 66665444677788888888877765221            1235666777777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=2.9e-13  Score=132.49  Aligned_cols=155  Identities=24%  Similarity=0.297  Sum_probs=109.5

Q ss_pred             cCCCcccEEEeecCCCCCCCCC--C-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC
Q 047733           36 DALKVCTAISLKNSNISELPQV--F-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL  112 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  112 (508)
                      .+.+.++.|++++|.+.+++..  . .+++|++|++++|            .+..++...|.++++|++|++++|.++.+
T Consensus        36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N------------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~  103 (361)
T 2xot_A           36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN------------HLNFISSEAFVPVPNLRYLDLSSNHLHTL  103 (361)
T ss_dssp             SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS------------CCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC------------cCCccChhhccCCCCCCEEECCCCcCCcC
Confidence            3456678888888888766542  2 6788888888773            33344444457788888888888888766


Q ss_pred             c-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHHh----ccCCCCceEeccCCCCCCccChhh
Q 047733          113 P-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEEI----GQLTHLRLLDLSNCFNLKVIPPNV  185 (508)
Q Consensus       113 ~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~~~  185 (508)
                      + ..|..+++|++|++++|.++.  +..+..+++|++|++++|.++.+|..+    ..+++|++|++++|. +..++...
T Consensus       104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~  182 (361)
T 2xot_A          104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTD  182 (361)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHH
T ss_pred             CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHH
Confidence            5 357778888888888888776  467778888888888888887776554    467888888888876 66777654


Q ss_pred             hhcCCC--CcEEEeecCCCc
Q 047733          186 ISSLSQ--LEELYIGESPIM  203 (508)
Q Consensus       186 l~~l~~--L~~L~l~~~~~~  203 (508)
                      +..++.  ++.|++.+|.+.
T Consensus       183 ~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          183 LQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HHHSCHHHHTTEECCSSCEE
T ss_pred             hhhccHhhcceEEecCCCcc
Confidence            666766  367777776553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.43  E-value=8.6e-13  Score=119.45  Aligned_cols=128  Identities=14%  Similarity=0.180  Sum_probs=95.0

Q ss_pred             CCccEEEecCCcCCCCc--hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEe
Q 047733           97 RELRVLDFARMHLLPLP--SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLD  171 (508)
Q Consensus        97 ~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~  171 (508)
                      ..+++|++++|.++.++  ..+..+++|++|++++|.++. + ..+..+++|++|++++|.++.++. .+..+++|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            44678888888887663  347788888888888888877 3 578888888888888888876654 367888888888


Q ss_pred             ccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          172 LSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       172 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      +++|. +..+++..+..+++|++|++++|.++...            +..+..+++|+.|++++|.
T Consensus       112 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          112 LRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVA------------PGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBC------------TTTTTTCTTCCEEECCSCC
T ss_pred             CCCCc-CCeECHhHcCCCccCCEEECCCCcCCEEC------------HHHhcCCCCCCEEEecCcC
Confidence            88877 66665444678888888888888776321            2456677788888877765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.43  E-value=4.5e-13  Score=115.89  Aligned_cols=130  Identities=18%  Similarity=0.214  Sum_probs=86.2

Q ss_pred             CCcccEEEeecCCCC--CCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-Cc
Q 047733           38 LKVCTAISLKNSNIS--ELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LP  113 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~  113 (508)
                      ++++++|++++|.+.  .++... .+++|++|++.+|.+.            .+  ..+..+++|++|++++|.++. +|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~------------~~--~~~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI------------SV--SNLPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC------------CC--SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC------------Ch--hhhccCCCCCEEECcCCcCchHHH
Confidence            466788888887775  666553 6777777777773332            22  123667777777777777765 66


Q ss_pred             hhhccCccccEEeccCCCCCC-c--cccCCCCCCcEEEccCCCchhhHH----HhccCCCCceEeccCCCCCCccC
Q 047733          114 SSLRLFQNLQTLSLDYCELGD-I--AIVGDLKTLVILTLRGSDMEKLVE----EIGQLTHLRLLDLSNCFNLKVIP  182 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~~~~~~~~~  182 (508)
                      ..+..+++|++|++++|.+++ +  ..+..+++|++|++++|.+..+|.    .+..+++|++|++++|. ...+|
T Consensus        89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~  163 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP  163 (168)
T ss_dssp             HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred             HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence            666667777777777777666 3  566777777777777776665553    56667777777776665 44444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.41  E-value=1.1e-12  Score=119.58  Aligned_cols=132  Identities=19%  Similarity=0.204  Sum_probs=113.2

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      .+.++++.|++++|.+..+++  +..+++|++|++.+|            .+..++...|..+++|++|++++|.++.++
T Consensus        37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N------------~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  104 (229)
T 3e6j_A           37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN------------QLGALPVGVFDSLTQLTVLDLGTNQLTVLP  104 (229)
T ss_dssp             CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC------------CCCCcChhhcccCCCcCEEECCCCcCCccC
Confidence            456899999999999988754  338999999999994            345556566789999999999999999877


Q ss_pred             h-hhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCC
Q 047733          114 S-SLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLK  179 (508)
Q Consensus       114 ~-~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~  179 (508)
                      . .+..+++|++|++++|.++. |..+..+++|++|++++|.++.++. .+..+++|++|++.+|....
T Consensus       105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            5 47899999999999999998 7888999999999999999998874 47889999999999987433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.41  E-value=1.3e-12  Score=134.46  Aligned_cols=157  Identities=19%  Similarity=0.247  Sum_probs=127.8

Q ss_pred             CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      ++++++.|++++|.+..+|  ..+++|++|++++|.+.            .+|. + ..  +|++|++++|.++.+|.  
T Consensus        78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~------------~ip~-l-~~--~L~~L~Ls~N~l~~lp~--  137 (571)
T 3cvr_A           78 LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLS------------TLPE-L-PA--SLKHLDVDNNQLTMLPE--  137 (571)
T ss_dssp             CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCS------------CCCC-C-CT--TCCEEECCSSCCSCCCC--
T ss_pred             HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCC------------Ccch-h-hc--CCCEEECCCCcCCCCCC--
Confidence            5688999999999999998  56899999999994433            3444 2 33  89999999999998887  


Q ss_pred             ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCC---
Q 047733          117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL---  192 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L---  192 (508)
                       .+++|++|++++|.++. |.   .+++|++|++++|.++.+|. +.  ++|+.|++++|. +..+|.  +..  +|   
T Consensus       138 -~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~  205 (571)
T 3cvr_A          138 -LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHS  205 (571)
T ss_dssp             -CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC--------
T ss_pred             -cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcc
Confidence             68899999999999887 44   57899999999999988887 54  899999999987 777776  333  66   


Q ss_pred             ----cEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733          193 ----EELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE  238 (508)
Q Consensus       193 ----~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  238 (508)
                          +.|++++|.++             .++..+..+++|+.|++++|..
T Consensus       206 ~~~L~~L~Ls~N~l~-------------~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          206 EETEIFFRCRENRIT-------------HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             --CCEEEECCSSCCC-------------CCCGGGGGSCTTEEEECCSSSC
T ss_pred             cccceEEecCCCcce-------------ecCHHHhcCCCCCEEEeeCCcC
Confidence                99999999876             3456677799999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.39  E-value=9.1e-13  Score=111.46  Aligned_cols=122  Identities=20%  Similarity=0.218  Sum_probs=88.4

Q ss_pred             CCcccEEEeecCCCC--CCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-Cc
Q 047733           38 LKVCTAISLKNSNIS--ELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LP  113 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~  113 (508)
                      ++++++|++++|.+.  .++... .+++|++|++.+|.+.            .+  ..+..+++|++|++++|.++. +|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~--~~~~~l~~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT------------SI--ANLPKLNKLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC------------CC--TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC------------Cc--hhhhcCCCCCEEECCCCcccchHH
Confidence            467888888888886  676653 7888888888874332            22  224677888888888888876 67


Q ss_pred             hhhccCccccEEeccCCCCCC-c--cccCCCCCCcEEEccCCCchhhHH----HhccCCCCceEecc
Q 047733          114 SSLRLFQNLQTLSLDYCELGD-I--AIVGDLKTLVILTLRGSDMEKLVE----EIGQLTHLRLLDLS  173 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~  173 (508)
                      ..+..+++|++|++++|.+++ +  ..++.+++|++|++++|.++.+|.    .+..+++|++|+++
T Consensus        82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            767778888888888888776 3  667777888888888877775553    46677777777764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.38  E-value=6.6e-13  Score=112.31  Aligned_cols=107  Identities=21%  Similarity=0.182  Sum_probs=69.1

Q ss_pred             CCCccEEEecCCcCC--CCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchh-hHHHhccCCCCceEec
Q 047733           96 MRELRVLDFARMHLL--PLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEK-LVEEIGQLTHLRLLDL  172 (508)
Q Consensus        96 l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l  172 (508)
                      .++|+.|++++|.++  .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..+..+++|++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            356677777777666  5666666677777777777766655556666777777777776665 6655566777777777


Q ss_pred             cCCCCCCccCh-hhhhcCCCCcEEEeecCCCc
Q 047733          173 SNCFNLKVIPP-NVISSLSQLEELYIGESPIM  203 (508)
Q Consensus       173 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  203 (508)
                      ++|. +..++. ..+..+++|++|++++|.++
T Consensus        96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            7765 554431 22566677777777666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.34  E-value=1.9e-12  Score=112.77  Aligned_cols=123  Identities=17%  Similarity=0.230  Sum_probs=61.3

Q ss_pred             CcccEEEeecCCCCCCCCCCCCC-CCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh-h
Q 047733           39 KVCTAISLKNSNISELPQVFECP-QLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS-L  116 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~  116 (508)
                      .+++.|++++|.+..++.+..+. +|++|++++|.+..            + .. +..+++|++|++++|.++.+|.. +
T Consensus        19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~------------~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK------------L-DG-FPLLRRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE------------E-CC-CCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc------------c-cc-cccCCCCCEEECCCCcccccCcchh
Confidence            44566666666665554444333 55555555532221            1 11 24555555555555555554432 2


Q ss_pred             ccCccccEEeccCCCCCC-cc--ccCCCCCCcEEEccCCCchhhHHH----hccCCCCceEeccCC
Q 047733          117 RLFQNLQTLSLDYCELGD-IA--IVGDLKTLVILTLRGSDMEKLVEE----IGQLTHLRLLDLSNC  175 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~-~~--~i~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~  175 (508)
                      ..+++|++|++++|.++. +.  .++.+++|++|++++|.+..+|..    +..+++|+.|+++.|
T Consensus        85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            555555555555555544 22  445555555555555555444432    444555555555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.34  E-value=1.7e-12  Score=113.12  Aligned_cols=131  Identities=15%  Similarity=0.153  Sum_probs=82.3

Q ss_pred             CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-c
Q 047733           57 VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-I  135 (508)
Q Consensus        57 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~  135 (508)
                      ...+++|+.|++.+|.+.            .++. +....++|++|++++|.++.+ ..+..+++|++|++++|.++. +
T Consensus        15 ~~~~~~L~~L~l~~n~l~------------~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~   80 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP------------VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG   80 (176)
T ss_dssp             EECTTSCEEEECTTSCCC------------SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC
T ss_pred             cCCcCCceEEEeeCCCCc------------hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC
Confidence            335667777777773322            2222 212233777777777777665 456677777777777777666 4


Q ss_pred             cc-cCCCCCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccChh---hhhcCCCCcEEEeecCCC
Q 047733          136 AI-VGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPN---VISSLSQLEELYIGESPI  202 (508)
Q Consensus       136 ~~-i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~  202 (508)
                      .. ++.+++|++|++++|.+..+|.  .+..+++|++|++++|. +..++..   .+..+++|+.|++..+..
T Consensus        81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            33 3667777777777777766665  56677777777777766 4555542   356677777777666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.31  E-value=2.4e-12  Score=137.18  Aligned_cols=158  Identities=17%  Similarity=0.243  Sum_probs=98.2

Q ss_pred             CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733           38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL  116 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~  116 (508)
                      .+.+++|++.++.+...+... ....|+.+.+..     +..  ..+... ++...|..+.+|++|++++|.+..+|..+
T Consensus       172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~-----~~~--~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  243 (727)
T 4b8c_D          172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDE-----DDD--IENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANI  243 (727)
T ss_dssp             ----------------------------------------------------------CCCCCCEEECTTSCCSCCCGGG
T ss_pred             CCccceEEeeCCCCCcchhhHhhcCccCcccccC-----ccc--ccccee-cChhhhccCCCCcEEECCCCCCCCCChhh
Confidence            356889999888886654322 333333333332     211  012222 44445688999999999999999999888


Q ss_pred             ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733          117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL  195 (508)
Q Consensus       117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  195 (508)
                      ..+++|++|+|++|.++. |..++++.+|++|+|++|.++.+|..++.+++|++|+|++|. +..+|.. ++.+++|+.|
T Consensus       244 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L  321 (727)
T 4b8c_D          244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFL  321 (727)
T ss_dssp             GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCE
T ss_pred             cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEE
Confidence            899999999999999888 788899999999999999999899889999999999999987 7788887 7899999999


Q ss_pred             EeecCCCccc
Q 047733          196 YIGESPIMWG  205 (508)
Q Consensus       196 ~l~~~~~~~~  205 (508)
                      ++++|.+++.
T Consensus       322 ~L~~N~l~~~  331 (727)
T 4b8c_D          322 GVEGNPLEKQ  331 (727)
T ss_dssp             ECTTSCCCSH
T ss_pred             eCCCCccCCC
Confidence            9999988643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=1.2e-11  Score=109.35  Aligned_cols=104  Identities=22%  Similarity=0.368  Sum_probs=51.2

Q ss_pred             CccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccC
Q 047733           98 ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSN  174 (508)
Q Consensus        98 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~  174 (508)
                      +|++|++++|.++.+|..+..+++|++|++++|.++.  +..+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence            4445555555554444445555555555555555444  2334455555555555555544432 344555555555555


Q ss_pred             CCCCCccChhhhhcCCCCcEEEeecCCC
Q 047733          175 CFNLKVIPPNVISSLSQLEELYIGESPI  202 (508)
Q Consensus       175 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~  202 (508)
                      |. +..++...+..+++|+.|++++|.+
T Consensus       112 N~-l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          112 ND-ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CC-CCeeChhhhhcCccccEEEeCCCCe
Confidence            44 4444443344555555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.28  E-value=8.9e-12  Score=110.17  Aligned_cols=122  Identities=18%  Similarity=0.265  Sum_probs=74.9

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCCh-hhhhCCCCccEEEecCCcCCCC-chhhccC
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPD-KFFTGMRELRVLDFARMHLLPL-PSSLRLF  119 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l  119 (508)
                      +.++++++.+..+|... .++|++|++.+|.+.            .++. .+|..+++|++|++++|.++.+ |..|..+
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   77 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELG------------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCC------------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCC------------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence            56777777776666533 236777777763322            2222 2346667777777777777654 4566667


Q ss_pred             ccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCC
Q 047733          120 QNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCF  176 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~  176 (508)
                      ++|++|++++|+++.  +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            777777777776665  24466666677777766666644 4445566666666666655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.26  E-value=2.2e-11  Score=107.59  Aligned_cols=126  Identities=16%  Similarity=0.188  Sum_probs=98.9

Q ss_pred             cEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch--hhccCccccEEeccCCCCCC--ccccC
Q 047733           64 KYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS--SLRLFQNLQTLSLDYCELGD--IAIVG  139 (508)
Q Consensus        64 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~l~~--~~~i~  139 (508)
                      ++++++++..            ..+|..+   ..++++|++++|.++.++.  .+..+++|++|++++|.++.  +..+.
T Consensus        11 ~~l~~s~~~l------------~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   75 (192)
T 1w8a_A           11 TTVDCTGRGL------------KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE   75 (192)
T ss_dssp             TEEECTTSCC------------SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred             CEEEcCCCCc------------CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC
Confidence            6777777433            4444433   2378999999999988775  38899999999999999887  57888


Q ss_pred             CCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccc
Q 047733          140 DLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWG  205 (508)
Q Consensus       140 ~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  205 (508)
                      .+++|++|++++|.++.++. .+..+++|++|++++|. +..+++..+..+++|++|++++|.+...
T Consensus        76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            99999999999998887764 37788999999999987 6666444478899999999999887633

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.25  E-value=4.1e-11  Score=105.88  Aligned_cols=121  Identities=21%  Similarity=0.339  Sum_probs=101.7

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCc
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQ  120 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~  120 (508)
                      +.++++++.+..+|... .++|++|++.+|            .+..+|.. |..+++|++|++++|.++.++ ..|..++
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n------------~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~   78 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGN------------QFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMT   78 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSS------------CCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCC------------cCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCC
Confidence            57888899888888643 468999999984            34455643 488999999999999998776 5689999


Q ss_pred             cccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCC
Q 047733          121 NLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCF  176 (508)
Q Consensus       121 ~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~  176 (508)
                      +|++|++++|.++.  +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus        79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            99999999999887  46789999999999999999988764 7789999999999987

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.23  E-value=2.5e-12  Score=136.96  Aligned_cols=131  Identities=19%  Similarity=0.162  Sum_probs=105.1

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccc
Q 047733           59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAI  137 (508)
Q Consensus        59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~  137 (508)
                      .+++|+.|++++            +.+..+|..+| ++++|++|+|++|.++.+|..++++++|++|+|++|.++. |..
T Consensus       222 ~l~~L~~L~Ls~------------n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~  288 (727)
T 4b8c_D          222 DDQLWHALDLSN------------LQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE  288 (727)
T ss_dssp             CCCCCCEEECTT------------SCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred             cCCCCcEEECCC------------CCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh
Confidence            789999999998            34446666664 7999999999999999999999999999999999999888 788


Q ss_pred             cCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCC-CCcEEEeecCCCc
Q 047733          138 VGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLS-QLEELYIGESPIM  203 (508)
Q Consensus       138 i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~  203 (508)
                      ++.+.+|++|+|++|.+..+|..++.+++|++|+|++|.....+|.. +..+. .+..+++.+|.++
T Consensus       289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCC
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCccc
Confidence            99999999999999999999988999999999999998833344433 33321 1123456666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.22  E-value=6.1e-11  Score=103.26  Aligned_cols=122  Identities=17%  Similarity=0.277  Sum_probs=77.2

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-hhccCc
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQ  120 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~  120 (508)
                      +.+++.++.+..+|.. ..++|++|++.+|.            ...++...|..+++|++|++++|.++.++. .+..++
T Consensus        10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTG-IPSSATRLELESNK------------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT   76 (177)
T ss_dssp             TEEECCSSCCSSCCTT-CCTTCSEEECCSSC------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CEEEecCCCCccCCCC-CCCCCcEEEeCCCc------------ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC
Confidence            5667777776666642 23577777777632            233444444667777777777777766553 356677


Q ss_pred             cccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCC
Q 047733          121 NLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCF  176 (508)
Q Consensus       121 ~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~  176 (508)
                      +|++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus        77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            77777777777666 3 3456677777777777766666544 3556677777776665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=4.2e-11  Score=123.64  Aligned_cols=150  Identities=17%  Similarity=0.190  Sum_probs=106.5

Q ss_pred             hhhCCCCccEEE-ecCCcCCCCch------hhccC--ccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhc
Q 047733           92 FFTGMRELRVLD-FARMHLLPLPS------SLRLF--QNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIG  162 (508)
Q Consensus        92 ~~~~l~~L~~L~-l~~~~~~~l~~------~~~~l--~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~  162 (508)
                      .++.+++|+.|+ ++.+.+..++.      .+..+  ..|+.|++++|.++.++.++.+++|++|++++|.++.+|..++
T Consensus       404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~  483 (567)
T 1dce_A          404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA  483 (567)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGG
T ss_pred             HHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhh
Confidence            347778888887 55554332221      11111  2588888888888873238888888888888888888888888


Q ss_pred             cCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC
Q 047733          163 QLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP  242 (508)
Q Consensus       163 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  242 (508)
                      .+++|++|++++|. +..+| . ++.+++|+.|++++|.++...           .+..++.+++|+.|++++|.....|
T Consensus       484 ~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~~L~Ls~N~l~~~~-----------~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          484 ALRCLEVLQASDNA-LENVD-G-VANLPRLQELLLCNNRLQQSA-----------AIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             GCTTCCEEECCSSC-CCCCG-G-GTTCSSCCEEECCSSCCCSSS-----------TTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cCCCCCEEECCCCC-CCCCc-c-cCCCCCCcEEECCCCCCCCCC-----------CcHHHhcCCCCCEEEecCCcCCCCc
Confidence            88888888888877 66676 3 788888888888888776221           1466788888888888888866666


Q ss_pred             CCC----ccCCCccEEE
Q 047733          243 RDL----SFFKMLQRYS  255 (508)
Q Consensus       243 ~~l----~~~~~L~~L~  255 (508)
                      ...    ..+++|+.|.
T Consensus       550 ~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          550 GIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCTTHHHHHCTTCSEEE
T ss_pred             cHHHHHHHHCcccCccC
Confidence            543    3467777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.19  E-value=1.1e-12  Score=116.74  Aligned_cols=106  Identities=23%  Similarity=0.304  Sum_probs=51.3

Q ss_pred             hCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEec
Q 047733           94 TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDL  172 (508)
Q Consensus        94 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l  172 (508)
                      ..+++|++|++++|.++.+| .+..+++|++|++++|.++. |..+..+++|++|++++|.++.+| .+..+++|++|++
T Consensus        45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred             hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence            44555555555555554444 44455555555555555444 333344455555555555554444 3444555555555


Q ss_pred             cCCCCCCccCh-hhhhcCCCCcEEEeecCCC
Q 047733          173 SNCFNLKVIPP-NVISSLSQLEELYIGESPI  202 (508)
Q Consensus       173 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  202 (508)
                      ++|. +..++. ..+..+++|++|++++|.+
T Consensus       123 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence            5544 333332 1244555555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.19  E-value=1.3e-10  Score=101.21  Aligned_cols=107  Identities=23%  Similarity=0.387  Sum_probs=83.4

Q ss_pred             CCCccEEEecCCcCCCCch-hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEe
Q 047733           96 MRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLD  171 (508)
Q Consensus        96 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~  171 (508)
                      ..+|++|++++|.++.++. .+..+++|++|++++|.++. + ..++.+++|++|++++|.++.+|.. +..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            3678888888888887664 46788888888888888877 4 4567888888888888888877654 56788888888


Q ss_pred             ccCCCCCCccChhhhhcCCCCcEEEeecCCCc
Q 047733          172 LSNCFNLKVIPPNVISSLSQLEELYIGESPIM  203 (508)
Q Consensus       172 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  203 (508)
                      +++|. +..++...+..+++|++|++++|.+.
T Consensus       107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence            88876 66777765577888888888887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.16  E-value=8.4e-11  Score=121.40  Aligned_cols=123  Identities=20%  Similarity=0.191  Sum_probs=104.2

Q ss_pred             CccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCC
Q 047733           98 ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCF  176 (508)
Q Consensus        98 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~  176 (508)
                      .|++|++++|.++.+|. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.+++|++|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            58999999999999987 9999999999999999988 789999999999999999999998 89999999999999987


Q ss_pred             CCCcc--ChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEE
Q 047733          177 NLKVI--PPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEI  233 (508)
Q Consensus       177 ~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  233 (508)
                       +..+  |.. ++.+++|+.|++++|.++...+         .....+..+++|+.|++
T Consensus       520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~---------~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG---------IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS---------CTTHHHHHCTTCSEEEC
T ss_pred             -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc---------HHHHHHHHCcccCccCC
Confidence             6666  555 8999999999999998874432         12223345778888763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.13  E-value=2.2e-12  Score=114.79  Aligned_cols=141  Identities=18%  Similarity=0.273  Sum_probs=108.3

Q ss_pred             ccEEEeecC--CCCCCCC-CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733           41 CTAISLKNS--NISELPQ-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR  117 (508)
Q Consensus        41 lr~L~l~~~--~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  117 (508)
                      ++...+.+.  .+..++. +..+++|++|++++|.+            ..+| . +..+++|++|++++|.++.+|..+.
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l------------~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~   90 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI------------EKIS-S-LSGMENLRILSLGRNLIKKIENLDA   90 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE------------SCCC-C-HHHHTTCCEEEEEEEEECSCSSHHH
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC------------cccc-c-cccCCCCCEEECCCCCcccccchhh
Confidence            444455443  2334443 33899999999998433            3345 3 4789999999999999999998888


Q ss_pred             cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccC----------hhh
Q 047733          118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIP----------PNV  185 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~----------~~~  185 (508)
                      .+++|++|++++|+++.+..++.+++|++|++++|.++.++.  .+..+++|++|++++|. +...+          ...
T Consensus        91 ~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           91 VADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHH
T ss_pred             cCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHH
Confidence            889999999999999884478889999999999999887664  68899999999999987 43221          123


Q ss_pred             hhcCCCCcEEE
Q 047733          186 ISSLSQLEELY  196 (508)
Q Consensus       186 l~~l~~L~~L~  196 (508)
                      +..+++|+.|+
T Consensus       170 ~~~l~~L~~Ld  180 (198)
T 1ds9_A          170 VKRLPNLKKLD  180 (198)
T ss_dssp             HHHCSSCSEEC
T ss_pred             HHhCCCcEEEC
Confidence            67888899886

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.05  E-value=4.5e-10  Score=97.33  Aligned_cols=100  Identities=22%  Similarity=0.400  Sum_probs=50.0

Q ss_pred             cEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCC
Q 047733          100 RVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCF  176 (508)
Q Consensus       100 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~  176 (508)
                      +.++++++.++.+|..+.  ++|++|++++|.++.  +..++++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            445555555555554332  445555555555444  24455555555555555555544433 2455555555555544


Q ss_pred             CCCccChhhhhcCCCCcEEEeecCCC
Q 047733          177 NLKVIPPNVISSLSQLEELYIGESPI  202 (508)
Q Consensus       177 ~~~~~~~~~l~~l~~L~~L~l~~~~~  202 (508)
                       +..++...+..+++|++|++++|.+
T Consensus        93 -l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           93 -LKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             -CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             -cceeCHHHhccccCCCEEEeCCCCc
Confidence             4444443344555555555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.05  E-value=4.7e-10  Score=96.85  Aligned_cols=102  Identities=23%  Similarity=0.320  Sum_probs=55.7

Q ss_pred             ccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCC
Q 047733           99 LRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNC  175 (508)
Q Consensus        99 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~  175 (508)
                      .+.++++++.++.+|..+.  ++|++|++++|.++.  +..+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3455555555555554332  455566666655554  24455556666666666655555433 345566666666655


Q ss_pred             CCCCccChhhhhcCCCCcEEEeecCCCc
Q 047733          176 FNLKVIPPNVISSLSQLEELYIGESPIM  203 (508)
Q Consensus       176 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~  203 (508)
                      . +..++...+..+++|++|++++|.+.
T Consensus        89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            4 44555433455566666666555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=9.8e-10  Score=105.84  Aligned_cols=79  Identities=15%  Similarity=0.135  Sum_probs=42.6

Q ss_pred             CCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCcc-EEEEecccCccCC
Q 047733          164 LTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLT-SLEILIEDEKTLP  242 (508)
Q Consensus       164 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~  242 (508)
                      +++|+.+++..|. +..++...+..+.+|+.+.+..+ +.. .           ....+..+++|+ .+.+.. ....++
T Consensus       225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~-I-----------~~~aF~~~~~L~~~l~l~~-~l~~I~  289 (329)
T 3sb4_A          225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKT-I-----------GQRVFSNCGRLAGTLELPA-SVTAIE  289 (329)
T ss_dssp             CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCE-E-----------CTTTTTTCTTCCEEEEECT-TCCEEC
T ss_pred             cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cce-e-----------hHHHhhCChhccEEEEEcc-cceEEc
Confidence            5666666666654 56666655666666666666554 221 1           113355566666 666655 322332


Q ss_pred             -CCCccCCCccEEEEE
Q 047733          243 -RDLSFFKMLQRYSIL  257 (508)
Q Consensus       243 -~~l~~~~~L~~L~i~  257 (508)
                       ..+..+++|+.+.+.
T Consensus       290 ~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          290 FGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             TTTTTTCTTEEEEEEC
T ss_pred             hhhhhCCccCCEEEeC
Confidence             334556666666553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.98  E-value=1.8e-09  Score=93.55  Aligned_cols=101  Identities=18%  Similarity=0.296  Sum_probs=51.7

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh-hccCc
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS-LRLFQ  120 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~  120 (508)
                      +.++++++.+..+|... .++|++|++++|            .+..++...|.++++|++|++++|.++.+|.. |..++
T Consensus        15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~   81 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNN------------QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT   81 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-CTTCSEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             cEEEeCCCCCCccCCCc-CCCCcEEEeCCC------------CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence            45566666665555432 255556665552            22222222235555556666665555555432 34555


Q ss_pred             cccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCch
Q 047733          121 NLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDME  155 (508)
Q Consensus       121 ~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~  155 (508)
                      +|++|++++|+++. + ..+..+++|++|++++|.+.
T Consensus        82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            55555555555554 3 23555555555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.95  E-value=5e-09  Score=90.32  Aligned_cols=101  Identities=18%  Similarity=0.273  Sum_probs=63.7

Q ss_pred             ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-hhccC
Q 047733           41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLF  119 (508)
Q Consensus        41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l  119 (508)
                      .+.++++++.+..+|... .++|++|++++|            .+..++...|.++++|++|++++|.++.+|. .|..+
T Consensus        11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N------------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l   77 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDN------------QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL   77 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSS------------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             CCEEEeCCCCcCccCccC-CCCCcEEEcCCC------------cCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence            356777777777776533 366777777763            2333333334667777777777777766654 34667


Q ss_pred             ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCc
Q 047733          120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDM  154 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i  154 (508)
                      ++|++|++++|+++. + ..+..+++|++|++++|.+
T Consensus        78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            777777777777666 3 3466677777777777644

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.88  E-value=6.2e-10  Score=108.74  Aligned_cols=163  Identities=18%  Similarity=0.170  Sum_probs=102.6

Q ss_pred             CCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC--CchhhccCccccEEeccCCCCCC--c
Q 047733           60 CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP--LPSSLRLFQNLQTLSLDYCELGD--I  135 (508)
Q Consensus        60 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~~--~  135 (508)
                      ++.|+.|++++|.+.....       ..+...+.....+|+.|++++|.++.  +......+.+|+.|++++|.+++  .
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~-------~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~  143 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKC-------TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC  143 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHH-------HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred             HhhCCEEEecCCCCCHHHH-------HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence            4678888888732211100       00111111123688888888888763  22333346678888888888775  2


Q ss_pred             ccc-----CCCCCCcEEEccCCCch-----hhHHHhccCCCCceEeccCCCCCCccC----hhhhhcCCCCcEEEeecCC
Q 047733          136 AIV-----GDLKTLVILTLRGSDME-----KLVEEIGQLTHLRLLDLSNCFNLKVIP----PNVISSLSQLEELYIGESP  201 (508)
Q Consensus       136 ~~i-----~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~  201 (508)
                      ..+     ...++|++|++++|.++     .++..+..+++|++|++++|. +++..    ...+...++|++|++++|.
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            333     34678888888888776     355556778888888888877 54322    1124567788888888887


Q ss_pred             CccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733          202 IMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE  238 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  238 (508)
                      ++...        ...+...+...++|+.|++++|..
T Consensus       223 i~~~g--------~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          223 AGDTA--------ALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             CCHHH--------HHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             CCHHH--------HHHHHHHHHhCCCCCEEeccCCCC
Confidence            75221        113445566677888888888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.86  E-value=1e-08  Score=98.71  Aligned_cols=250  Identities=13%  Similarity=0.090  Sum_probs=149.4

Q ss_pred             CCcccEEEeecCCC-CCCCCCCC-CCCCcEEEcCCCCCC-------CCCc-ccCCCCCCCCChhhhhC--------CCCc
Q 047733           38 LKVCTAISLKNSNI-SELPQVFE-CPQLKYFHIANDPSR-------RIPV-HIANDPSRRIPDKFFTG--------MREL   99 (508)
Q Consensus        38 ~~~lr~L~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~--------l~~L   99 (508)
                      ..++++|.+.++-- .++..+.. +++|++|++++|.+.       .++. .+.......+|..+|.+        +.+|
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L  103 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL  103 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence            45688888886421 12222222 788888888887665       2211 01111222577777888        9999


Q ss_pred             cEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCc----hhhH-HHhccCCCC----
Q 047733          100 RVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDM----EKLV-EEIGQLTHL----  167 (508)
Q Consensus       100 ~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i----~~lp-~~~~~l~~L----  167 (508)
                      +.+++.. .++.++ ..|..|++|+.+++.++.+..  ...+..+.++.++.......    ..+. ..+..+.+|    
T Consensus       104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i  182 (329)
T 3sb4_A          104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI  182 (329)
T ss_dssp             CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred             cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence            9999998 777766 568899999999999888765  36677777777776555211    0111 012233333    


Q ss_pred             ----------------------ceEeccCCCCCCccCh-hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccC
Q 047733          168 ----------------------RLLDLSNCFNLKVIPP-NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN  224 (508)
Q Consensus       168 ----------------------~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  224 (508)
                                            ..+.+.+.  +..... .....+++|+.+++..|.++.-.            ...+..
T Consensus       183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~------------~~aF~~  248 (329)
T 3sb4_A          183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNATTIP------------DFTFAQ  248 (329)
T ss_dssp             EECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCCCEEC------------TTTTTT
T ss_pred             EecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCcceec------------HhhhhC
Confidence                                  33333332  111111 11124899999999987765221            145788


Q ss_pred             CCCccEEEEecccCccCCC-CCccCCCcc-EEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEE
Q 047733          225 LSKLTSLEILIEDEKTLPR-DLSFFKMLQ-RYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELC  302 (508)
Q Consensus       225 l~~L~~L~l~~~~~~~~~~-~l~~~~~L~-~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~  302 (508)
                      +++|+.+++..+ ...++. .+..+.+|+ .+.+.. . .                      ..........+++|+.++
T Consensus       249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l----------------------~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-V----------------------TAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-C----------------------CEECTTTTTTCTTEEEEE
T ss_pred             CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-c----------------------eEEchhhhhCCccCCEEE
Confidence            999999999876 444444 457788888 777642 1 0                      111233344678899999


Q ss_pred             ecCCCCccccccCCcCCCCCCCcEEEE
Q 047733          303 LGGSLDMKSVLYGSHGEGFPQLKHLEV  329 (508)
Q Consensus       303 l~~~~~~~~~~~~~~~~~~~~L~~L~l  329 (508)
                      +.+. .++.+.... ..++++|+.++.
T Consensus       304 l~~n-~i~~I~~~a-F~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGD-KITTLGDEL-FGNGVPSKLIYK  328 (329)
T ss_dssp             ECSS-CCCEECTTT-TCTTCCCCEEEC
T ss_pred             eCCC-ccCccchhh-hcCCcchhhhcc
Confidence            9543 455554332 356788887753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.74  E-value=2.7e-09  Score=104.17  Aligned_cols=155  Identities=14%  Similarity=0.085  Sum_probs=112.9

Q ss_pred             CCCcccEEEeecCCCCCCC-----CCC--CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcC
Q 047733           37 ALKVCTAISLKNSNISELP-----QVF--ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHL  109 (508)
Q Consensus        37 ~~~~lr~L~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  109 (508)
                      .++.++.|++++|.+....     ...  ..++|++|++++|.+           .......++..+++|+.|++++|.+
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-----------~~~~~~~l~~~L~~L~~L~Ls~n~l  138 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-----------DPAGLRTLLPVFLRARKLGLQLNSL  138 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-----------CHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-----------CHHHHHHHHHHHHhccHhhcCCCCC
Confidence            3578999999999985321     111  347999999999422           2222233445567899999999998


Q ss_pred             CCC-----chhh-ccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch-----hhHHHhccCCCCceEec
Q 047733          110 LPL-----PSSL-RLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME-----KLVEEIGQLTHLRLLDL  172 (508)
Q Consensus       110 ~~l-----~~~~-~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l  172 (508)
                      +..     ...+ ....+|++|++++|.+++  .    ..+...++|++|++++|.+.     .++..+...++|++|++
T Consensus       139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L  218 (372)
T 3un9_A          139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV  218 (372)
T ss_dssp             CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred             CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence            732     2222 246789999999999875  2    34577899999999999887     34566788899999999


Q ss_pred             cCCCCCCccCh----hhhhcCCCCcEEEeecCCCc
Q 047733          173 SNCFNLKVIPP----NVISSLSQLEELYIGESPIM  203 (508)
Q Consensus       173 ~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~  203 (508)
                      ++|. ++....    ..+...++|++|++++|.+.
T Consensus       219 s~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          219 AYNG-AGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            9987 554321    12456799999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.70  E-value=1.6e-09  Score=92.33  Aligned_cols=92  Identities=16%  Similarity=0.149  Sum_probs=46.9

Q ss_pred             cCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCcccccccc
Q 047733          381 QLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCT  460 (508)
Q Consensus       381 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~  460 (508)
                      +|++|++++|. +++.... .+..+++|++|++++|..+++-.......       ....+++|++|++++|+++++-..
T Consensus        62 ~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~-------~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQ-------LENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHT-------CHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             eEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHh-------cccccCCCCEEEcCCCCcCCHHHH
Confidence            45555555554 4443221 22455666666666665554433211000       000134566666666666666554


Q ss_pred             CccccccCCccEEEEeeCCCcc
Q 047733          461 GDLHFEFPSLEKLRILECPQVK  482 (508)
Q Consensus       461 ~~~~~~~p~L~~L~i~~C~~l~  482 (508)
                      ..+. .+|+|+.|++++||+++
T Consensus       133 ~~L~-~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          133 IALH-HFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHGG-GCTTCCEEEEESCTTCC
T ss_pred             HHHh-cCCCCCEEECCCCCCCC
Confidence            4443 45667777777776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.64  E-value=6.8e-09  Score=88.51  Aligned_cols=91  Identities=14%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             CcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhh---ccCCCcEEeeccccchhhhhccccCCc
Q 047733          354 VLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGR---GLQQLQFIEVTECQNLDVIFAAERGDE  430 (508)
Q Consensus       354 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~---~l~~L~~L~i~~c~~L~~i~~~~~~~~  430 (508)
                      .|+.|++++|. +++....  ....+++|++|++++|..+++-....+..   .+++|++|++++|+++++--..     
T Consensus        62 ~L~~LDLs~~~-Itd~GL~--~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-----  133 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFD--HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-----  133 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGG--GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-----
T ss_pred             eEeEEeCcCCC-ccHHHHH--HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-----
Confidence            34555555543 3332211  12345666666666666665543222211   1245666666666666554321     


Q ss_pred             CCCCCCceeeccccCeeEcCCCcccccc
Q 047733          431 SSNSNTQVIELTQLTILELCYLPQLTSF  458 (508)
Q Consensus       431 ~~~~~~~~~~~~~L~~L~l~~c~~L~~~  458 (508)
                            .+..+++|++|++++|+++++.
T Consensus       134 ------~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          134 ------ALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             ------HGGGCTTCCEEEEESCTTCCCH
T ss_pred             ------HHhcCCCCCEEECCCCCCCCch
Confidence                  2224667777777777766654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.63  E-value=2.8e-06  Score=83.61  Aligned_cols=252  Identities=13%  Similarity=0.095  Sum_probs=150.9

Q ss_pred             CCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH
Q 047733           84 PSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE  160 (508)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~  160 (508)
                      .+..++...|.+. +|+.+++..+ ++.+. ..|.++ +|+.+.+.. .++.  ...+.++.+|+.+++..+.++.++..
T Consensus       123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~  198 (401)
T 4fdw_A          123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS  198 (401)
T ss_dssp             TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred             ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence            3455666666764 7888888766 55544 345554 588888875 4554  36788888999999988888888766


Q ss_pred             hccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCcc
Q 047733          161 IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT  240 (508)
Q Consensus       161 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  240 (508)
                      ...+.+|+.+.+..+  +..++...+..+++|+.+.+..+-....             ...+.. .+|+.+.+..+ ...
T Consensus       199 aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~-------------~~aF~~-~~L~~i~lp~~-i~~  261 (401)
T 4fdw_A          199 TFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIG-------------QEAFRE-SGITTVKLPNG-VTN  261 (401)
T ss_dssp             TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEEC-------------TTTTTT-CCCSEEEEETT-CCE
T ss_pred             hEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcc-------------cccccc-CCccEEEeCCC-ccE
Confidence            555788998888743  6777776678888899888875321100             122333 57888887433 233


Q ss_pred             C-CCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCC
Q 047733          241 L-PRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGE  319 (508)
Q Consensus       241 ~-~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  319 (508)
                      + ...+..+++|+.+.+......                  ..............+++|+.+.+..  .++.+.... ..
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~------------------~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a-F~  320 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFN------------------DDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL-LG  320 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCC------------------CCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT-TT
T ss_pred             EChhHhhCCCCCCEEEeCCcccc------------------CCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh-hc
Confidence            3 334567788888877532210                  0000012233344577888888753  354443322 35


Q ss_pred             CCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCccccccc-ccCCeEEEcC
Q 047733          320 GFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESF-CQLRDMRVNG  389 (508)
Q Consensus       320 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~-~~L~~L~l~~  389 (508)
                      ++++|+.+.+..  +++.+. ..     .-..+ +|+.+.+.+.. +..+....+  ..+ .+++.|++-.
T Consensus       321 ~c~~L~~l~lp~--~l~~I~-~~-----aF~~~-~L~~l~l~~n~-~~~l~~~~F--~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          321 GNRKVTQLTIPA--NVTQIN-FS-----AFNNT-GIKEVKVEGTT-PPQVFEKVW--YGFPDDITVIRVPA  379 (401)
T ss_dssp             TCCSCCEEEECT--TCCEEC-TT-----SSSSS-CCCEEEECCSS-CCBCCCSSC--CCSCTTCCEEEECG
T ss_pred             CCCCccEEEECc--cccEEc-HH-----hCCCC-CCCEEEEcCCC-Ccccccccc--cCCCCCccEEEeCH
Confidence            678888888854  355542 11     11234 78888887742 333322211  223 3566776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.62  E-value=7.4e-07  Score=87.79  Aligned_cols=255  Identities=15%  Similarity=0.144  Sum_probs=108.8

Q ss_pred             CcccEEEeecCCCCCCCCCC--CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hh
Q 047733           39 KVCTAISLKNSNISELPQVF--ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SS  115 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~  115 (508)
                      +.++.+.+.. .+..++...  .+ +|+.+.+..+             +..++...|.+. +|+.+.+.. .++.+. ..
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-------------i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a  175 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-------------LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI  175 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-------------CCEECTTTTTTC-CCCEEECCT-TCCEECSST
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-------------ccEECHHhcCCC-CceEEEeCC-CccEehHHH
Confidence            3445555543 233333321  33 5777776541             333344444442 455555554 333332 34


Q ss_pred             hccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCc
Q 047733          116 LRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLE  193 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~  193 (508)
                      |..|.+|+.+++.++.++. +.......+|+.+.+..+ ++.++ ..+.+|++|+.+++..+  +..++...+.. .+|+
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~  251 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGIT  251 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCS
T ss_pred             hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCcc
Confidence            5555555555555555444 221112345555555432 33333 22345555555555442  34444432333 4455


Q ss_pred             EEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCc-----cC-CCCCccCCCccEEEEEecCcccCCCC
Q 047733          194 ELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEK-----TL-PRDLSFFKMLQRYSILIGDQWAWDSP  267 (508)
Q Consensus       194 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~-~~~l~~~~~L~~L~i~~~~~~~~~~~  267 (508)
                      .+.+..+ +..-            ....+..+++|+.+.+.++...     .+ ...+..+++|+.+.+...-..-....
T Consensus       252 ~i~lp~~-i~~I------------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~a  318 (401)
T 4fdw_A          252 TVKLPNG-VTNI------------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGL  318 (401)
T ss_dssp             EEEEETT-CCEE------------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTT
T ss_pred             EEEeCCC-ccEE------------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhh
Confidence            5554321 1100            0123444555555555443321     11 12234445555444431100001122


Q ss_pred             CCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCC-CCCcEEEEec
Q 047733          268 SDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGF-PQLKHLEVVE  331 (508)
Q Consensus       268 ~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~  331 (508)
                      +..+.+|+.+.|... ...........+ +|+.+.+.+.. ...+.... ..++ ..++.+.+..
T Consensus       319 F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~-F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          319 LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKV-WYGFPDDITVIRVPA  379 (401)
T ss_dssp             TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSS-CCCSCTTCCEEEECG
T ss_pred             hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC-Cccccccc-ccCCCCCccEEEeCH
Confidence            233334444444211 112233334456 89999997652 22222211 2345 3678888865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.60  E-value=7.8e-08  Score=93.19  Aligned_cols=91  Identities=23%  Similarity=0.126  Sum_probs=51.7

Q ss_pred             CCCCCChhhhhCCCCccEEEecC-CcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH
Q 047733           84 PSRRIPDKFFTGMRELRVLDFAR-MHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE  159 (508)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~  159 (508)
                      ....+|.  +..+.+|+.|+|++ |.++.++ ..|..+++|++|+|++|.++.  +..|+++++|++|+|++|.+..+|.
T Consensus        20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence            3444555  25566666666664 6666554 446666666666666666655  2455666666666666666665554


Q ss_pred             HhccCCCCceEeccCCC
Q 047733          160 EIGQLTHLRLLDLSNCF  176 (508)
Q Consensus       160 ~~~~l~~L~~L~l~~~~  176 (508)
                      .+.....|+.|++.+|.
T Consensus        98 ~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             TTTCSCCCCEEECCSSC
T ss_pred             HHcccCCceEEEeeCCC
Confidence            43322236666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.56  E-value=2e-07  Score=90.24  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=83.1

Q ss_pred             cEEEeecC-CCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccC
Q 047733           42 TAISLKNS-NISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLF  119 (508)
Q Consensus        42 r~L~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l  119 (508)
                      ..++.+++ .+..+|.+..+++|+.|++++           ++.+..++...|.++.+|++|+|++|.++.++ ..|.++
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~-----------~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l   79 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIEN-----------QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT   79 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCS-----------CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccC-----------CCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC
Confidence            35688887 888899855889999999985           24555566555689999999999999999765 578999


Q ss_pred             ccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCch
Q 047733          120 QNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDME  155 (508)
Q Consensus       120 ~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~  155 (508)
                      ++|++|+|++|+++. |..+.....|++|++.+|.+.
T Consensus        80 ~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence            999999999999988 544433334999999999776

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.50  E-value=5.7e-06  Score=81.46  Aligned_cols=302  Identities=13%  Similarity=0.114  Sum_probs=133.9

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--c
Q 047733           59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--I  135 (508)
Q Consensus        59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~  135 (508)
                      +|.+|+++.+..             .+..+...+|.++.+|+.+++..+ ++.+. ..|..+..|+.+.+... +..  .
T Consensus        69 ~c~~L~~i~lp~-------------~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~  133 (394)
T 4fs7_A           69 GCRKVTEIKIPS-------------TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV  133 (394)
T ss_dssp             TCTTEEEEECCT-------------TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred             CCCCceEEEeCC-------------CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence            788899988854             355666777888899999988755 44443 45667777777665432 111  1


Q ss_pred             cccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCC
Q 047733          136 AIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEG  214 (508)
Q Consensus       136 ~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  214 (508)
                      ..+..+..+.......  +..+. ..+.++.+|+.+.+..+  ...++...+..+.+|+.+.+..+-..-.         
T Consensus       134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I~---------  200 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKIIR---------  200 (394)
T ss_dssp             TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEEC---------
T ss_pred             eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEeC---------
Confidence            2222222222111111  11111 12445555555555432  2334443344555555554433211000         


Q ss_pred             cccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhc
Q 047733          215 RNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQ  294 (508)
Q Consensus       215 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~  294 (508)
                          ...+..+..|+.+.+..+.. ..........+|+.+.+......-..........++.+.+... ...........
T Consensus       201 ----~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~  274 (394)
T 4fs7_A          201 ----DYCFAECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYN  274 (394)
T ss_dssp             ----TTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTT
T ss_pred             ----chhhccccccceeecCCCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCC-cceeecccccc
Confidence                01122223333322221110 0000011122333332211000000011111122222222111 11111222234


Q ss_pred             ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcc
Q 047733          295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPL  374 (508)
Q Consensus       295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~  374 (508)
                      +..++.+.....    .+ .......+.+|+.+.+.+  +++.+. ..     .-..+.+|+++.+..  .++.+...  
T Consensus       275 ~~~l~~~~~~~~----~i-~~~~F~~~~~L~~i~l~~--~i~~I~-~~-----aF~~c~~L~~i~lp~--~v~~I~~~--  337 (394)
T 4fs7_A          275 CSGLKKVIYGSV----IV-PEKTFYGCSSLTEVKLLD--SVKFIG-EE-----AFESCTSLVSIDLPY--LVEEIGKR--  337 (394)
T ss_dssp             CTTCCEEEECSS----EE-CTTTTTTCTTCCEEEECT--TCCEEC-TT-----TTTTCTTCCEECCCT--TCCEECTT--
T ss_pred             ccccceeccCce----ee-cccccccccccccccccc--ccceec-hh-----hhcCCCCCCEEEeCC--cccEEhHH--
Confidence            455666555321    11 111235677888887754  355441 11     122456788887753  34444322  


Q ss_pred             cccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeec
Q 047733          375 AAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVT  414 (508)
Q Consensus       375 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~  414 (508)
                      ....+.+|+.+.+..  .++.++... ...+++|+.+++.
T Consensus       338 aF~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp  374 (394)
T 4fs7_A          338 SFRGCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELP  374 (394)
T ss_dssp             TTTTCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEE
T ss_pred             hccCCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEEC
Confidence            224567788887754  467775533 3678888888885

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.42  E-value=1.4e-07  Score=91.34  Aligned_cols=56  Identities=25%  Similarity=0.204  Sum_probs=29.2

Q ss_pred             hhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccC--CCCCCcEEEcc
Q 047733           93 FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVG--DLKTLVILTLR  150 (508)
Q Consensus        93 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~--~l~~L~~L~l~  150 (508)
                      +..+++|+.|+++++.-..++. + .+++|+.|++..|.+..  ...++  .+++|++|+|+
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            3556666666666653122332 2 25566666666655543  23332  45666666653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.36  E-value=1.1e-05  Score=79.28  Aligned_cols=313  Identities=11%  Similarity=0.069  Sum_probs=155.7

Q ss_pred             CCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhH-H
Q 047733           84 PSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLV-E  159 (508)
Q Consensus        84 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~  159 (508)
                      .+..+...+|.++.+|+.+.+..+ ++.+. ..|.+|.+|+.+++..+ ++.  ...+..+.+|+.+.+..+ +..+. .
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            344567777899999999999754 66554 56888999999998654 443  355667777777666543 22222 1


Q ss_pred             HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCc
Q 047733          160 EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEK  239 (508)
Q Consensus       160 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  239 (508)
                      .+..+..+.......   ...+....+..+.+|+.+.+..+...-             ....+..+.+|+.+.+..+-..
T Consensus       135 aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~I-------------~~~~F~~c~~L~~i~l~~~~~~  198 (394)
T 4fs7_A          135 AFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSMETL-------------HNGLFSGCGKLKSIKLPRNLKI  198 (394)
T ss_dssp             TTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCEE-------------CTTTTTTCTTCCBCCCCTTCCE
T ss_pred             eeecccccccccCcc---ccccchhhhcccCCCcEEecCCcccee-------------ccccccCCCCceEEEcCCCceE
Confidence            233443333222222   334444446778888888876533220             1133556666766665433111


Q ss_pred             cCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCC
Q 047733          240 TLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGE  319 (508)
Q Consensus       240 ~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  319 (508)
                      --...+..+..|+.+.+....                         ...........+|+.+.+..  .++.+... ...
T Consensus       199 I~~~~F~~~~~L~~i~~~~~~-------------------------~~i~~~~~~~~~l~~i~ip~--~~~~i~~~-~f~  250 (394)
T 4fs7_A          199 IRDYCFAECILLENMEFPNSL-------------------------YYLGDFALSKTGVKNIIIPD--SFTELGKS-VFY  250 (394)
T ss_dssp             ECTTTTTTCTTCCBCCCCTTC-------------------------CEECTTTTTTCCCCEEEECT--TCCEECSS-TTT
T ss_pred             eCchhhccccccceeecCCCc-------------------------eEeehhhcccCCCceEEECC--Cceecccc-ccc
Confidence            111122334444433221000                         00000011234566665532  12222211 124


Q ss_pred             CCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecch
Q 047733          320 GFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPL  399 (508)
Q Consensus       320 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~  399 (508)
                      ++..|+.+.+...  +..+.. .     .-..++.++........    +..  .....+.+|+.+.+..  .++.++..
T Consensus       251 ~~~~l~~~~~~~~--~~~i~~-~-----~F~~~~~l~~~~~~~~~----i~~--~~F~~~~~L~~i~l~~--~i~~I~~~  314 (394)
T 4fs7_A          251 GCTDLESISIQNN--KLRIGG-S-----LFYNCSGLKKVIYGSVI----VPE--KTFYGCSSLTEVKLLD--SVKFIGEE  314 (394)
T ss_dssp             TCSSCCEEEECCT--TCEECS-C-----TTTTCTTCCEEEECSSE----ECT--TTTTTCTTCCEEEECT--TCCEECTT
T ss_pred             ccccceeEEcCCC--cceeec-c-----ccccccccceeccCcee----ecc--cccccccccccccccc--ccceechh
Confidence            5666676666542  222210 0     11223445444443211    111  1223456677777654  45666543


Q ss_pred             hhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEe
Q 047733          400 VIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRIL  476 (508)
Q Consensus       400 ~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~  476 (508)
                      . ...+.+|+.+++..  +++.+.           ......+.+|+++.+..  +++.+...+.. .|++|+.+++.
T Consensus       315 a-F~~c~~L~~i~lp~--~v~~I~-----------~~aF~~c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~lp  374 (394)
T 4fs7_A          315 A-FESCTSLVSIDLPY--LVEEIG-----------KRSFRGCTSLSNINFPL--SLRKIGANAFQ-GCINLKKVELP  374 (394)
T ss_dssp             T-TTTCTTCCEECCCT--TCCEEC-----------TTTTTTCTTCCEECCCT--TCCEECTTTBT-TCTTCCEEEEE
T ss_pred             h-hcCCCCCCEEEeCC--cccEEh-----------HHhccCCCCCCEEEECc--cccEehHHHhh-CCCCCCEEEEC
Confidence            2 35567777777642  233332           23344566777777654  36666554433 56777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.13  E-value=2.9e-06  Score=73.92  Aligned_cols=109  Identities=15%  Similarity=0.095  Sum_probs=67.7

Q ss_pred             hhCCCCccEEEecCC-cCCC-----CchhhccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch-----
Q 047733           93 FTGMRELRVLDFARM-HLLP-----LPSSLRLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME-----  155 (508)
Q Consensus        93 ~~~l~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~-----  155 (508)
                      +...+.|+.|++++| .+..     +...+...++|++|++++|.+.+  .    ..+...++|++|++++|.+.     
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            456777788888777 6652     34455566777777777777664  1    23444567777777777665     


Q ss_pred             hhHHHhccCCCCceEec--cCCCCCCccCh----hhhhcCCCCcEEEeecCCC
Q 047733          156 KLVEEIGQLTHLRLLDL--SNCFNLKVIPP----NVISSLSQLEELYIGESPI  202 (508)
Q Consensus       156 ~lp~~~~~l~~L~~L~l--~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~  202 (508)
                      .+...+...++|++|++  ++|. ++....    ..+...++|++|++++|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            34555666677777777  5555 433211    1244556777777776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.12  E-value=1.6e-06  Score=83.93  Aligned_cols=66  Identities=14%  Similarity=0.108  Sum_probs=30.8

Q ss_pred             ccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccc---cccCCccEEEEeeCC
Q 047733          404 GLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLH---FEFPSLEKLRILECP  479 (508)
Q Consensus       404 ~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~---~~~p~L~~L~i~~C~  479 (508)
                      .+|+|++|++.+|..-......-         .....+|+|++|+++.+ .+++.....+.   ..+++|+.|+++.|.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~l---------a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMF---------LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHH---------HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCcCEEeCCCCCCchHHHHHH---------HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            45666666666655332221100         00123566666666553 45543211111   134666666666663

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.04  E-value=3.2e-06  Score=73.64  Aligned_cols=116  Identities=15%  Similarity=0.139  Sum_probs=86.7

Q ss_pred             CchhhccCccccEEeccCC-CCCC--c----cccCCCCCCcEEEccCCCch-----hhHHHhccCCCCceEeccCCCCCC
Q 047733          112 LPSSLRLFQNLQTLSLDYC-ELGD--I----AIVGDLKTLVILTLRGSDME-----KLVEEIGQLTHLRLLDLSNCFNLK  179 (508)
Q Consensus       112 l~~~~~~l~~L~~L~l~~~-~l~~--~----~~i~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~  179 (508)
                      +...+...+.|++|++++| .+.+  .    ..+...++|++|++++|.+.     .+...+...++|++|++++|. ++
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~  106 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS  106 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence            3455677889999999999 7875  1    45667889999999999876     455667778899999999987 55


Q ss_pred             cc-----ChhhhhcCCCCcEEEe--ecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          180 VI-----PPNVISSLSQLEELYI--GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       180 ~~-----~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      +.     ... +...++|++|++  .+|.+...        +...+...+...+.|+.|++++|.
T Consensus       107 ~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~--------g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          107 GSGILALVEA-LQSNTSLIELRIDNQSQPLGNN--------VEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH--------HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHH-HHhCCCceEEEecCCCCCCCHH--------HHHHHHHHHHhCCCcCEEeccCCC
Confidence            42     232 567788999999  77776522        122345566777889999998876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.83  E-value=6.8e-06  Score=75.42  Aligned_cols=78  Identities=22%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             cCccccEEeccCCCCCCc----cccCCCCCCcEEEccCCCchhhHHHhccCC--CCceEeccCCCCCCccC------hhh
Q 047733          118 LFQNLQTLSLDYCELGDI----AIVGDLKTLVILTLRGSDMEKLVEEIGQLT--HLRLLDLSNCFNLKVIP------PNV  185 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~----~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~~~~~------~~~  185 (508)
                      ++++|+.|++++|.++.+    ..+..+++|++|+|++|.+..+. .+..+.  +|++|++.+|+....++      ..+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            445555555555555441    22334555555555555555331 222222  55666665555222222      112


Q ss_pred             hhcCCCCcEEE
Q 047733          186 ISSLSQLEELY  196 (508)
Q Consensus       186 l~~l~~L~~L~  196 (508)
                      +..+|+|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45566666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.83  E-value=0.0011  Score=64.87  Aligned_cols=107  Identities=10%  Similarity=0.152  Sum_probs=46.0

Q ss_pred             CChhhhhCCC-CccEEEecCCcCCCCc-hhhccCccccEEeccCCC---CCC--ccccCCCCCCcEEEccCCCchhhH-H
Q 047733           88 IPDKFFTGMR-ELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCE---LGD--IAIVGDLKTLVILTLRGSDMEKLV-E  159 (508)
Q Consensus        88 ~~~~~~~~l~-~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~---l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~  159 (508)
                      +...+|.+++ .|+.+.+..+ ++.+. ..|.+|.+|+.+.+..+.   ++.  ...+..+.+|+.+.+..+ ++.++ .
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~  131 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE  131 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence            3344444443 3555555433 33222 345555555555554432   222  133444444544443332 22222 1


Q ss_pred             HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733          160 EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG  198 (508)
Q Consensus       160 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  198 (508)
                      .+..+.+|+.+.+...  ...+....+..+.+|+.+.+.
T Consensus       132 aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          132 AFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred             hhhhhcccccccccce--eeeecccceeccccccccccc
Confidence            2345555555555431  334444334455555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.81  E-value=0.003  Score=61.85  Aligned_cols=147  Identities=10%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             CCC-CCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCc---CCCCc-hhhccCccccEEeccCCCCC
Q 047733           59 ECP-QLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMH---LLPLP-SSLRLFQNLQTLSLDYCELG  133 (508)
Q Consensus        59 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~l~-~~~~~l~~L~~L~l~~~~l~  133 (508)
                      ++. .|+++.+-.             .+..+...+|.++.+|+.+.+..+.   ++.+. ..|..+.+|+.+.+... ++
T Consensus        61 ~~~~~L~sI~iP~-------------svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~  126 (394)
T 4gt6_A           61 NYKYVLTSVQIPD-------------TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT  126 (394)
T ss_dssp             TCCSCCCEEEECT-------------TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred             CCCCcCEEEEECC-------------CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc
Confidence            453 578877744             3556777778999999999998763   44443 46778888888777553 34


Q ss_pred             C--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCc
Q 047733          134 D--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGV  210 (508)
Q Consensus       134 ~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  210 (508)
                      .  ...+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+  +..+....+ ...+|+.+.+...-...      
T Consensus       127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF-~~~~l~~i~ip~~~~~i------  196 (394)
T 4gt6_A          127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAF-TGTALTQIHIPAKVTRI------  196 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCCCSEEEECTTCCEE------
T ss_pred             eehhhhhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccc-cccceeEEEECCccccc------
Confidence            3  356778889999998654 33343 34567889999888653  556665433 34568888775432221      


Q ss_pred             CCCCcccchhhccCCCCccEEEEecc
Q 047733          211 DGEGRNASLDELNNLSKLTSLEILIE  236 (508)
Q Consensus       211 ~~~~~~~~~~~l~~l~~L~~L~l~~~  236 (508)
                             ....+..+.++........
T Consensus       197 -------~~~af~~c~~l~~~~~~~~  215 (394)
T 4gt6_A          197 -------GTNAFSECFALSTITSDSE  215 (394)
T ss_dssp             -------CTTTTTTCTTCCEEEECCS
T ss_pred             -------ccchhhhccccceeccccc
Confidence                   1133455666666655433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.74  E-value=4.3e-05  Score=70.08  Aligned_cols=79  Identities=25%  Similarity=0.241  Sum_probs=63.5

Q ss_pred             hCCCCccEEEecCCcCCCC---chhhccCccccEEeccCCCCCCccccCCCC--CCcEEEccCCCchh-hH-------HH
Q 047733           94 TGMRELRVLDFARMHLLPL---PSSLRLFQNLQTLSLDYCELGDIAIVGDLK--TLVILTLRGSDMEK-LV-------EE  160 (508)
Q Consensus        94 ~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~--~L~~L~l~~~~i~~-lp-------~~  160 (508)
                      .++++|+.|+|++|.++.+   +..+..+++|+.|+|++|.+++...+..+.  +|++|++++|.+.. +|       ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            5789999999999999764   466779999999999999998754444444  99999999997762 22       34


Q ss_pred             hccCCCCceEec
Q 047733          161 IGQLTHLRLLDL  172 (508)
Q Consensus       161 ~~~l~~L~~L~l  172 (508)
                      +..+++|+.||-
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            678999999973

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.47  E-value=0.0083  Score=58.23  Aligned_cols=122  Identities=9%  Similarity=0.087  Sum_probs=62.1

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC-c-
Q 047733           59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD-I-  135 (508)
Q Consensus        59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~-~-  135 (508)
                      ...+|+.+.+..             .+..++...|.++.+|+.+++..+ ++.+. ..|.++ .|+.+.+..+ ++. . 
T Consensus        44 ~~~~i~~v~ip~-------------~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~  107 (379)
T 4h09_A           44 DRDRISEVRVNS-------------GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGD  107 (379)
T ss_dssp             GGGGCSEEEECT-------------TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECT
T ss_pred             cccCCEEEEeCC-------------CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEecc
Confidence            445666666643             344566666777777887777644 44433 345555 4555555332 222 1 


Q ss_pred             cccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecC
Q 047733          136 AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGES  200 (508)
Q Consensus       136 ~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  200 (508)
                      ..+.. .+|+.+.+..+ +..+........+|+.+.+..+  +..+....+..+.+++...+...
T Consensus       108 ~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          108 YVFQG-TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN  168 (379)
T ss_dssp             TTTTT-CCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred             ceecc-CCcccccCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence            22322 36777777554 2223222222235555554431  34444433556666776665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.55  E-value=0.022  Score=49.23  Aligned_cols=106  Identities=13%  Similarity=0.130  Sum_probs=63.6

Q ss_pred             hCCCCccEEEecCC-cCCC-----CchhhccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch-----h
Q 047733           94 TGMRELRVLDFARM-HLLP-----LPSSLRLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME-----K  156 (508)
Q Consensus        94 ~~l~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~-----~  156 (508)
                      .+-..|+.|+++++ .+..     +...+..-..|+.|+|++|.+.+  .    ..+..-..|+.|+|++|.|.     .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            45567888888775 6642     34455555678888888887765  1    23334567788888877665     4


Q ss_pred             hHHHhccCCCCceEeccCCC--CCCc-----cChhhhhcCCCCcEEEeecC
Q 047733          157 LVEEIGQLTHLRLLDLSNCF--NLKV-----IPPNVISSLSQLEELYIGES  200 (508)
Q Consensus       157 lp~~~~~l~~L~~L~l~~~~--~~~~-----~~~~~l~~l~~L~~L~l~~~  200 (508)
                      +.+.+..-+.|++|+++++.  .++.     +.. .+..-+.|++|+++.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCC
Confidence            44555555667788776542  1222     111 1344466777776544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.01  E-value=0.019  Score=49.57  Aligned_cols=116  Identities=13%  Similarity=0.153  Sum_probs=71.9

Q ss_pred             hhccCccccEEeccCC-CCCC-----c-cccCCCCCCcEEEccCCCch-----hhHHHhccCCCCceEeccCCCCCCccC
Q 047733          115 SLRLFQNLQTLSLDYC-ELGD-----I-AIVGDLKTLVILTLRGSDME-----KLVEEIGQLTHLRLLDLSNCFNLKVIP  182 (508)
Q Consensus       115 ~~~~l~~L~~L~l~~~-~l~~-----~-~~i~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~  182 (508)
                      .+.+-+.|+.|+++++ .+.+     . ..+..-..|+.|+|++|.+.     .+.+.+..-+.|++|+|+.|. ++...
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~G  114 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPEL  114 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHH
Confidence            3445567889999886 6764     1 45566778899999888776     455566677888889888877 44322


Q ss_pred             h-h---hhhcCCCCcEEEeecCCC-ccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          183 P-N---VISSLSQLEELYIGESPI-MWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       183 ~-~---~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      . .   .+..-..|++|+++++.. ...      .....++...+..-+.|..|+++++.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig------~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLG------NQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCC------HHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcC------HHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            1 1   133445688888875432 100      01112344556666677777776554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.95  E-value=0.053  Score=52.46  Aligned_cols=102  Identities=11%  Similarity=0.181  Sum_probs=47.8

Q ss_pred             hhCCCCccEEEecCCcCCCC-chhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCc
Q 047733           93 FTGMRELRVLDFARMHLLPL-PSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLR  168 (508)
Q Consensus        93 ~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~  168 (508)
                      |.....|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++.  ...+.++.+|+.+.+..+ ++.++. .+..|.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            344555555555433 1211 233445555555555433 222  233444555555555432 333332 244555666


Q ss_pred             eEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733          169 LLDLSNCFNLKVIPPNVISSLSQLEELYIG  198 (508)
Q Consensus       169 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  198 (508)
                      .+.+..+. +..++...+..|.+|+.+.+.
T Consensus       290 ~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          290 KVVMDNSA-IETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             EEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred             cccccccc-cceehhhhhcCCCCCCEEEcC
Confidence            66555433 444554445555666665554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.05  E-value=0.16  Score=40.58  Aligned_cols=31  Identities=19%  Similarity=0.152  Sum_probs=12.5

Q ss_pred             ccEEeccCCCCCC-c-cccCCCCCCcEEEccCC
Q 047733          122 LQTLSLDYCELGD-I-AIVGDLKTLVILTLRGS  152 (508)
Q Consensus       122 L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~  152 (508)
                      |++|+|++|+|+. + ..+..+++|++|+|++|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            3444444444333 1 23333444444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=90.83  E-value=0.54  Score=37.44  Aligned_cols=34  Identities=24%  Similarity=0.238  Sum_probs=19.7

Q ss_pred             CccEEEecCCcCCCCch-hhccCccccEEeccCCC
Q 047733           98 ELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCE  131 (508)
Q Consensus        98 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~  131 (508)
                      +|++|+|++|.++.++. .|..+++|++|+|.+|.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            45566666666665553 34555666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	508
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.2 bits (129), Expect = 2e-08
 Identities = 29/168 (17%), Positives = 64/168 (38%), Gaps = 19/168 (11%)

Query: 30  TSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIP 89
                  +L   T + L N+ IS L  +    +L    +  +    I       P   + 
Sbjct: 232 KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS------PLAGLT 285

Query: 90  DKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTL 149
                 + E ++ D + +  L         +NL  L+L +  + DI+ V  L  L  L  
Sbjct: 286 ALTNLELNENQLEDISPISNL---------KNLTYLTLYFNNISDISPVSSLTKLQRLFF 336

Query: 150 RGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197
             + +  +   +  LT++  L   +   +  + P  +++L+++ +L +
Sbjct: 337 ANNKVSDV-SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 119 FQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNL 178
                   L    + D     DL  +  L      ++ + + +  L +L  ++ SN   L
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN-QL 78

Query: 179 KVIPPNVISSLSQLEELYIGESPIMW 204
             I P  + +L++L ++ +  + I  
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIAD 102

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 36/203 (17%)

Query: 32  WPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDK 91
                 L    ++   N+ IS++  +     L    +  +  + I               
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT------------- 236

Query: 92  FFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRG 151
               +  L  LD A   +  L   L     L  L L   ++ +I+ +  L T +      
Sbjct: 237 -LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGL-TALTNLELN 293

Query: 152 SDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVD 211
            +  + +  I  L +L  L L    N+  I P  +SSL++L+ L+               
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFF-------------- 336

Query: 212 GEGRNASLDELNNLSKLTSLEIL 234
               N  + ++++L+ LT++  L
Sbjct: 337 ---ANNKVSDVSSLANLTNINWL 356

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 36/184 (19%), Positives = 60/184 (32%), Gaps = 9/184 (4%)

Query: 54  LPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113
               F         +AN  +       +N  S        T +  L   +     + PL 
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
               +  NL  LSL+  +L DI  +  L  L  L L  + +  L   +  LT L  L L 
Sbjct: 217 ----ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLG 271

Query: 174 NCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNAS---LDELNNLSKLTS 230
               +  I P    +     EL   +   +       +          + +++ +S LT 
Sbjct: 272 AN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 330

Query: 231 LEIL 234
           L+ L
Sbjct: 331 LQRL 334

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 5/112 (4%)

Query: 58  FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR 117
                    +I +  S   P     + S             L  L+ +   L+ LP+   
Sbjct: 245 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP- 303

Query: 118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRL 169
               L+ L   +  L ++      + L  L +  + + +  +    +  LR+
Sbjct: 304 --PRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 119 FQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNL 178
             +L+ L++   +L ++        L  L    + + ++ E    L     L +     L
Sbjct: 283 PPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPELPQNLKQ---LHVEYN-PL 336

Query: 179 KVIPPNVISSLSQLEELYI 197
           +  P         +E+L +
Sbjct: 337 REFP----DIPESVEDLRM 351

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 42/281 (14%), Positives = 85/281 (30%), Gaps = 17/281 (6%)

Query: 123 QTLSLDYCELGDIAIVGDLK-TLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVI 181
           QTL L    L        L   ++      S M++ + E      ++ +DLSN       
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 182 PPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL 241
              ++S  S+L+ L +    +             N +L + +NL +L         E  L
Sbjct: 63  LHGILSQCSKLQNLSLEGLRL--------SDPIVN-TLAKNSNLVRLNLSGCSGFSEFAL 113

Query: 242 PRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKEL 301
              LS    L   ++     +        ++ + +       +          L  +   
Sbjct: 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173

Query: 302 CLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLR 361
           C        S       + F +   L  +++ +L    D +          P L++L + 
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

Query: 362 DLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIG 402
            +     +            L  +++N C     +    IG
Sbjct: 234 GIVPDGTL------QLLKEALPHLQIN-CSHFTTIARPTIG 267

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 23/113 (20%)

Query: 98  ELRVLDFARMHL--LPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDME 155
           +++ LD     L        L L Q  Q + LD C L +                 +  +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE-----------------ARCK 45

Query: 156 KLVEEIGQLTHLRLLDLSNC----FNLKVIPPNVISSLSQLEELYIGESPIMW 204
            +   +     L  L+L +       +  +   + +   ++++L +    +  
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 19/153 (12%)

Query: 112 LPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLD 171
           L   +    +    +LD   L     +      V+L  R S    L      +  L  L+
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLN 71

Query: 172 LSNCFNLKVIP-PNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN------ 224
           LSN    ++    +++     L+ L +  + +   +        +   L    N      
Sbjct: 72  LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131

Query: 225 ----------LSKLTSLEILIEDEKTLPRDLSF 247
                       +   L  L  D   LP  ++F
Sbjct: 132 RDQSTYISAIRERFPKLLRL--DGHELPPPIAF 162

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 31/173 (17%), Positives = 57/173 (32%), Gaps = 11/173 (6%)

Query: 30  TSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDP-------SRRIPVHIAN 82
           T    +  L   T +      I  +  V     L   + +N+             +    
Sbjct: 31  TDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL 90

Query: 83  DPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLK 142
             + +I D                 + +     L+   NL  L L    + DI+ +  L 
Sbjct: 91  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 150

Query: 143 TLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195
           +L  L    + +  L + +  LT L  LD+S+   +  I    ++ L+ LE L
Sbjct: 151 SLQQLNFSSNQVTDL-KPLANLTTLERLDISSN-KVSDISV--LAKLTNLESL 199

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 116 LRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSN 174
           L     L TL  D  ++ DI+ +  L  L+ + L+ + +  +   +   ++L ++ L+N
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 93  FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGS 152
              +  +  LD +   L  LP +L   + L+ L      L ++  V +L  L  L L  +
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75

Query: 153 DMEKL--VEEIGQLTHLRLLDLSN--CFNLKVIPPNVISSLSQLEEL 195
            +++   ++ +     L LL+L        + I   +   L  +  +
Sbjct: 76  RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	508
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.82
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.62
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.58
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.32
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.23
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.21
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.05
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.74
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.7
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.66
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.53
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.51
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.72

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=7.5e-19  Score=171.55  Aligned_cols=320  Identities=21%  Similarity=0.237  Sum_probs=213.6

Q ss_pred             CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733           38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR  117 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  117 (508)
                      +.++++|+++++.+..+..+..+++|++|++++|.+            ..++.  ++++++|++|++++|.+..++. ++
T Consensus        43 l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l------------~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~  107 (384)
T d2omza2          43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL------------TDITP--LKNLTKLVDILMNNNQIADITP-LA  107 (384)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC------------CCCGG--GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred             hCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcC------------CCCcc--ccCCcccccccccccccccccc-cc
Confidence            567999999999998887666899999999999433            33443  5889999999999999988764 78


Q ss_pred             cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHH--------------------HhccCCCCceEeccCCCC
Q 047733          118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVE--------------------EIGQLTHLRLLDLSNCFN  177 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~--------------------~~~~l~~L~~L~l~~~~~  177 (508)
                      .+++|+.|++.++.+++.........+..+....+.+..+..                    .+.............+. 
T Consensus       108 ~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  186 (384)
T d2omza2         108 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-  186 (384)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc-
Confidence            999999999999887774444455566666555543331111                    11112222222222222 


Q ss_pred             CCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEE
Q 047733          178 LKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSIL  257 (508)
Q Consensus       178 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  257 (508)
                       ...... ...+++++.+.+..+.+...              ......++|+.|+++++....++ .+..+++|+.+.+.
T Consensus       187 -~~~~~~-~~~l~~~~~l~l~~n~i~~~--------------~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~  249 (384)
T d2omza2         187 -VSDISV-LAKLTNLESLIATNNQISDI--------------TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA  249 (384)
T ss_dssp             -CCCCGG-GGGCTTCSEEECCSSCCCCC--------------GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECC
T ss_pred             -cccccc-cccccccceeeccCCccCCC--------------CcccccCCCCEEECCCCCCCCcc-hhhcccccchhccc
Confidence             112222 57788899999888876522              23456678999999988765544 45677888888765


Q ss_pred             ecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCcee
Q 047733          258 IGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLC  337 (508)
Q Consensus       258 ~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  337 (508)
                      .+.. +                        .......+++|++|++.++ .++...   ....++.++.+.+..+ .++.
T Consensus       250 ~n~l-~------------------------~~~~~~~~~~L~~L~l~~~-~l~~~~---~~~~~~~l~~l~~~~n-~l~~  299 (384)
T d2omza2         250 NNQI-S------------------------NLAPLSGLTKLTELKLGAN-QISNIS---PLAGLTALTNLELNEN-QLED  299 (384)
T ss_dssp             SSCC-C------------------------CCGGGTTCTTCSEEECCSS-CCCCCG---GGTTCTTCSEEECCSS-CCSC
T ss_pred             cCcc-C------------------------CCCcccccccCCEeeccCc-ccCCCC---cccccccccccccccc-cccc
Confidence            4321 1                        0111235678888888665 333332   2356788888888774 3332


Q ss_pred             eeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733          338 VVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ  417 (508)
Q Consensus       338 i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~  417 (508)
                      +.        ....+++++.|+++++ +++.+.    +...+|+|++|++++| .++.++.   +..+++|++|+++++ 
T Consensus       300 ~~--------~~~~~~~l~~L~ls~n-~l~~l~----~l~~l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~~N-  361 (384)
T d2omza2         300 IS--------PISNLKNLTYLTLYFN-NISDIS----PVSSLTKLQRLFFANN-KVSDVSS---LANLTNINWLSAGHN-  361 (384)
T ss_dssp             CG--------GGGGCTTCSEEECCSS-CCSCCG----GGGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-
T ss_pred             cc--------ccchhcccCeEECCCC-CCCCCc----ccccCCCCCEEECCCC-CCCCChh---HcCCCCCCEEECCCC-
Confidence            21        3446788999999886 455542    3467899999999998 6777642   467899999999876 


Q ss_pred             chhhhhccccCCcCCCCCCceeeccccCeeEcCC
Q 047733          418 NLDVIFAAERGDESSNSNTQVIELTQLTILELCY  451 (508)
Q Consensus       418 ~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  451 (508)
                      .++++.             .+..+++|+.|++++
T Consensus       362 ~l~~l~-------------~l~~l~~L~~L~L~~  382 (384)
T d2omza2         362 QISDLT-------------PLANLTRITQLGLND  382 (384)
T ss_dssp             CCCBCG-------------GGTTCTTCSEEECCC
T ss_pred             cCCCCh-------------hhccCCCCCEeeCCC
Confidence            466554             245689999999876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1e-17  Score=163.43  Aligned_cols=63  Identities=19%  Similarity=0.355  Sum_probs=35.3

Q ss_pred             hCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhh
Q 047733           94 TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKL  157 (508)
Q Consensus        94 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~l  157 (508)
                      +.+++|++|++++|+++.++. ++++++|++|++++|++.+...++++++|+.|+++++.+..+
T Consensus        63 ~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~  125 (384)
T d2omza2          63 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI  125 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             ccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccccccccccccccccccccccc
Confidence            455566666666665555543 555566666666666555533455555666666555544433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.8e-16  Score=146.15  Aligned_cols=194  Identities=19%  Similarity=0.204  Sum_probs=155.0

Q ss_pred             CcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhcc
Q 047733           39 KVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRL  118 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~  118 (508)
                      ....+++-+++.+..+|+.. -+++++|++++            +.+..++...|.++++|++|++++|.++.++. ++.
T Consensus        10 ~~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~------------N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~   75 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSE------------NLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGT   75 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCC-CTTCCEEECTT------------SCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSC
T ss_pred             CCCeEEEccCCCCCeeCcCc-CcCCCEEECcC------------CcCCCcCHHHhhcccccccccccccccccccc-ccc
Confidence            44566788888888887643 25799999998            44455665557889999999999999987764 578


Q ss_pred             CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733          119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY  196 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  196 (508)
                      +++|++|++++|+++. +..+..+++|++|+++++.+..++ ..+..+.++++|++.+|. +..++...+..+++|+.++
T Consensus        76 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~  154 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLS  154 (266)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhcc
Confidence            8999999999999887 678888999999999999877665 345678899999999876 7778776677889999999


Q ss_pred             eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEec
Q 047733          197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIG  259 (508)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~  259 (508)
                      +++|.++...            ...+..+++|+.|++++|....+|..+..+++|+.+.+.+.
T Consensus       155 l~~N~l~~~~------------~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         155 LANNNLTELP------------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CTTSCCSCCC------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             cccccccccC------------ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCC
Confidence            9998876322            24467888999999999998889888888888888887643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=3.8e-15  Score=140.17  Aligned_cols=99  Identities=19%  Similarity=0.264  Sum_probs=45.9

Q ss_pred             CccEEEecCCcCCCCch-hhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccC
Q 047733           98 ELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSN  174 (508)
Q Consensus        98 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~  174 (508)
                      .+++|++++|.++.+|. .|.++++|++|++++|.+..  +..+.++++|++|++++|.++.+|..  ....++.|++..
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~  109 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHE  109 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS--CCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc--hhhhhhhhhccc
Confidence            44555555555554443 34455555555555555443  23444555555555555555444422  223444555444


Q ss_pred             CCCCCccChhhhhcCCCCcEEEeec
Q 047733          175 CFNLKVIPPNVISSLSQLEELYIGE  199 (508)
Q Consensus       175 ~~~~~~~~~~~l~~l~~L~~L~l~~  199 (508)
                      +. +..++...+.....++.+....
T Consensus       110 n~-l~~l~~~~~~~~~~~~~l~~~~  133 (305)
T d1xkua_         110 NE-ITKVRKSVFNGLNQMIVVELGT  133 (305)
T ss_dssp             SC-CCBBCHHHHTTCTTCCEEECCS
T ss_pred             cc-hhhhhhhhhhcccccccccccc
Confidence            43 3444433333444444444433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.1e-16  Score=143.72  Aligned_cols=174  Identities=18%  Similarity=0.240  Sum_probs=147.3

Q ss_pred             cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      ++++++++|++++|.+.+++.  +..+++|++|++.+|.+..+            +.  ++.+++|++|++++|.++..+
T Consensus        28 ~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l------------~~--~~~l~~L~~L~Ls~N~l~~~~   93 (266)
T d1p9ag_          28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL------------QV--DGTLPVLGTLDLSHNQLQSLP   93 (266)
T ss_dssp             CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE------------EC--CSCCTTCCEEECCSSCCSSCC
T ss_pred             CcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc------------cc--ccccccccccccccccccccc
Confidence            456789999999999988864  34899999999999554433            32  367899999999999999888


Q ss_pred             hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733          114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLS  190 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  190 (508)
                      ..+..+++|++|+++++.+..  +..+..+.++++|++++|.+..+|.. +..+++|+.+++++|. +..++...+..++
T Consensus        94 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~  172 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLE  172 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCT
T ss_pred             cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc-ccccCcccccccc
Confidence            889999999999999999776  47778899999999999999888754 5678999999999987 7788776678999


Q ss_pred             CCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          191 QLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       191 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      +|++|++++|.++             .++.++..+++|+.|++++|.
T Consensus       173 ~L~~L~Ls~N~L~-------------~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         173 NLDTLLLQENSLY-------------TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             TCCEEECCSSCCC-------------CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccceeecccCCCc-------------ccChhHCCCCCCCEEEecCCC
Confidence            9999999999887             344566778899999999875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.3e-15  Score=134.90  Aligned_cols=164  Identities=24%  Similarity=0.371  Sum_probs=109.8

Q ss_pred             CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733           38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR  117 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  117 (508)
                      +.++++|++.++.+..++.+..+++|++|++++|.+            ..++.  ++.+++|++|++++|+++.++ .+.
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i------------~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~  109 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL------------TDIKP--LANLKNLGWLFLDENKVKDLS-SLK  109 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC------------CCCGG--GTTCTTCCEEECCSSCCCCGG-GGT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccc------------cCccc--cccCccccccccccccccccc-ccc
Confidence            456777777777777766655777777777777332            22332  356777777777777777666 366


Q ss_pred             cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      .+++|+.|++.+|.+..+..+..+++|+.++++++.++..+ .+.++++|+++++++|. +..++.  +..+++|++|++
T Consensus       110 ~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~--l~~l~~L~~L~L  185 (210)
T d1h6ta2         110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYL  185 (210)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc-cccccc--ccCCCCCCEEEC
Confidence            77777777777777666556667777777777777666543 35567777777777765 555544  567777777777


Q ss_pred             ecCCCccccccCcCCCCcccchhhccCCCCccEEEEe
Q 047733          198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEIL  234 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  234 (508)
                      ++|.++              .+..+..+++|+.|+++
T Consensus       186 s~N~i~--------------~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         186 SKNHIS--------------DLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CSSCCC--------------BCGGGTTCTTCSEEEEE
T ss_pred             CCCCCC--------------CChhhcCCCCCCEEEcc
Confidence            777654              12346667777777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.64  E-value=5.2e-14  Score=134.75  Aligned_cols=137  Identities=19%  Similarity=0.313  Sum_probs=81.6

Q ss_pred             CcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhcc
Q 047733           39 KVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRL  118 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~  118 (508)
                      .++++|+++++.++.+|..  .++|++|++++|.+            ..+|.    .+.+|+.|++++|.++.++..   
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l------------~~lp~----~~~~L~~L~l~~n~l~~l~~l---   96 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSL------------TELPE----LPQSLKSLLVDNNNLKALSDL---   96 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCC------------SSCCC----CCTTCCEEECCSSCCSCCCSC---
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCC------------ccccc----chhhhhhhhhhhcccchhhhh---
Confidence            3577888888888777753  56778888777333            33332    235677777777777655431   


Q ss_pred             CccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733          119 FQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG  198 (508)
Q Consensus       119 l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  198 (508)
                      .+.|++|++++|.+...+.++.+.+|++|+++++.+...+.   ....+..+.+..+. ......  +..++.++.+.+.
T Consensus        97 p~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~l~~~~~~-~~~~~~--l~~l~~l~~L~l~  170 (353)
T d1jl5a_          97 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYAD  170 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCCC--CTTCTTCCEEECC
T ss_pred             ccccccccccccccccccchhhhccceeecccccccccccc---ccccccchhhcccc-cccccc--ccccccceecccc
Confidence            13477777777776663345667777777777776554432   22344555555433 222222  4556666666666


Q ss_pred             cCCC
Q 047733          199 ESPI  202 (508)
Q Consensus       199 ~~~~  202 (508)
                      .+..
T Consensus       171 ~n~~  174 (353)
T d1jl5a_         171 NNSL  174 (353)
T ss_dssp             SSCC
T ss_pred             cccc
Confidence            5544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.2e-15  Score=132.24  Aligned_cols=147  Identities=20%  Similarity=0.285  Sum_probs=81.9

Q ss_pred             CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733           38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR  117 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  117 (508)
                      +.+++.|++.++.+..++.+..+++|++|++++|.+            ..++.  ++++++|++|++++|.+..++. +.
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l------------~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~  103 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL------------TDITP--LKNLTKLVDILMNNNQIADITP-LA  103 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC------------CCCGG--GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccc------------cCccc--ccCCcccccccccccccccccc-cc
Confidence            345666666666665555544566666666665222            22222  3556666666666665555543 55


Q ss_pred             cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      .+++|++|++++|.+.....+..+++|++|++++|.+..++ .+..+++|+.|++.+|. +..++.  ++.+++|++|++
T Consensus       104 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~--l~~l~~L~~L~l  179 (199)
T d2omxa2         104 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKP--LANLTTLERLDI  179 (199)
T ss_dssp             TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred             cccccccccccccccccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCcc--ccCCCCCCEEEC
Confidence            56666666666655544444555666666666666555443 35555666666666554 444443  455666666666


Q ss_pred             ecCCCc
Q 047733          198 GESPIM  203 (508)
Q Consensus       198 ~~~~~~  203 (508)
                      ++|.++
T Consensus       180 s~N~i~  185 (199)
T d2omxa2         180 SSNKVS  185 (199)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            655543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.62  E-value=9.9e-16  Score=144.79  Aligned_cols=114  Identities=21%  Similarity=0.334  Sum_probs=67.4

Q ss_pred             CChhhhhCCCCccEEEecC-CcCC-CCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhc
Q 047733           88 IPDKFFTGMRELRVLDFAR-MHLL-PLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIG  162 (508)
Q Consensus        88 ~~~~~~~~l~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~  162 (508)
                      +|..+ +++++|++|++++ |.+. .+|..++++++|++|++++|++..  +..+..+.+|++++++.|.+. .+|..+.
T Consensus        68 lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          68 IPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            44444 5666666666665 4554 566666666666666666666554  355666666666666666443 4555666


Q ss_pred             cCCCCceEeccCCCCCCccChhhhhcCCCC-cEEEeecCCCc
Q 047733          163 QLTHLRLLDLSNCFNLKVIPPNVISSLSQL-EELYIGESPIM  203 (508)
Q Consensus       163 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~  203 (508)
                      ++++|+++++++|.....+|.. +..+.++ +.+.+..+.++
T Consensus       147 ~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         147 SLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred             cCcccceeeccccccccccccc-ccccccccccccccccccc
Confidence            6666666666666533345544 4455444 55555555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=7.5e-15  Score=131.70  Aligned_cols=186  Identities=17%  Similarity=0.273  Sum_probs=151.5

Q ss_pred             CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733           38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR  117 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~  117 (508)
                      +++++.|++.+|.+..++.+..+++|++|++++|.+            ..++.  +.++++|+++++++|.++.++. +.
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i------------~~~~~--l~~l~~l~~l~~~~n~~~~i~~-l~  104 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI------------TDLAP--LKNLTKITELELSGNPLKNVSA-IA  104 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC------------CCCGG--GTTCCSCCEEECCSCCCSCCGG-GT
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCcee------------ecccc--cccccccccccccccccccccc-cc
Confidence            568999999999998887777999999999998433            22322  4789999999999999887764 77


Q ss_pred             cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      .+++|+++++++|.......+...+.++.+.++++.+.... .+..+++|++|++.+|. +...+.  +..+++|++|++
T Consensus       105 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~L  180 (227)
T d1h6ua2         105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKA  180 (227)
T ss_dssp             TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred             ccccccccccccccccccchhccccchhhhhchhhhhchhh-hhccccccccccccccc-cccchh--hcccccceeccc
Confidence            89999999999998777667788899999999888776443 36788899999999887 555544  688999999999


Q ss_pred             ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEE
Q 047733          198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSIL  257 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~  257 (508)
                      ++|+++              .+..++.+++|+.|++++|....++. ++.+++|+.|.+.
T Consensus       181 s~n~l~--------------~l~~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         181 DDNKIS--------------DISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             CSSCCC--------------CCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             CCCccC--------------CChhhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            998775              22457888999999999998766653 6788999998875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=3.2e-15  Score=131.15  Aligned_cols=179  Identities=20%  Similarity=0.304  Sum_probs=142.2

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCcc
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQN  121 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~  121 (508)
                      .+..+..+.+.+......+++++.|++.++.+            ..++.  ++.+++|++|++++|+++.++. ++++++
T Consensus        21 i~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i------------~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~   85 (199)
T d2omxa2          21 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI------------KSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTK   85 (199)
T ss_dssp             HHHHTTCSSTTSEECHHHHTTCCEEECTTSCC------------CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred             HHHHhCCCCCCCccCHHHhcCCCEEECCCCCC------------CCccc--cccCCCcCcCccccccccCccc-ccCCcc
Confidence            34455556665554444688999999998433            33332  3789999999999999988775 899999


Q ss_pred             ccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCC
Q 047733          122 LQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP  201 (508)
Q Consensus       122 L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  201 (508)
                      |++|++++|.+.....++++++|++|+++++....++ .+..+++|+.|++++|. +..++.  +..+++|+.|++.+|+
T Consensus        86 L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2          86 LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             CCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSC
T ss_pred             ccccccccccccccccccccccccccccccccccccc-ccchhhhhHHhhhhhhh-hccccc--cccccccccccccccc
Confidence            9999999999887667899999999999999777554 47789999999999987 666664  7899999999999988


Q ss_pred             CccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEE
Q 047733          202 IMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRY  254 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L  254 (508)
                      ++              .+.+++.+++|+.|+++++....++ .+..+++|+.|
T Consensus       162 l~--------------~l~~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         162 VT--------------DLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CC--------------CCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             cc--------------CCccccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            76              2345889999999999999866654 46678888765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=3.3e-14  Score=133.58  Aligned_cols=243  Identities=16%  Similarity=0.208  Sum_probs=175.2

Q ss_pred             cCCCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733           36 DALKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP  113 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  113 (508)
                      .+++++++|++++|.+..+++.  ..+++|++|++.+            +....++...|.++++|++|++++|+++.+|
T Consensus        28 ~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~------------n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~   95 (305)
T d1xkua_          28 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN------------NKISKISPGAFAPLVKLERLYLSKNQLKELP   95 (305)
T ss_dssp             SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS------------SCCCCBCTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred             CCCCCCCEEECcCCcCCCcChhHhhcccccccccccc------------ccccccchhhhhCCCccCEecccCCccCcCc
Confidence            4678899999999999988753  3899999999998            3444454444688999999999999998888


Q ss_pred             hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCch---hhHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733          114 SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDME---KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS  188 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  188 (508)
                      ..  ....++.|.+.++.+.. + ..+.....+..++...+...   ..+..+..+++|+.+++.+|. +..++..   .
T Consensus        96 ~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~---~  169 (305)
T d1xkua_          96 EK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG---L  169 (305)
T ss_dssp             SS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS---C
T ss_pred             cc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCcc---c
Confidence            64  34578889998888776 3 55667778888888776433   223456788899999998876 6667653   4


Q ss_pred             CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEEecCcccCCCC
Q 047733          189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGDQWAWDSP  267 (508)
Q Consensus       189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~~~~  267 (508)
                      +++|++|++.++.....            ....+..++.++.|+++++..... +..+..+++|+.|.++++...+.   
T Consensus       170 ~~~L~~L~l~~n~~~~~------------~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l---  234 (305)
T d1xkua_         170 PPSLTELHLDGNKITKV------------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV---  234 (305)
T ss_dssp             CTTCSEEECTTSCCCEE------------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC---
T ss_pred             CCccCEEECCCCcCCCC------------ChhHhhccccccccccccccccccccccccccccceeeeccccccccc---
Confidence            68899999988776532            235677888899999998886555 44557788888888765432111   


Q ss_pred             CCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCC-----cCCCCCCCcEEEEecCC
Q 047733          268 SDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGS-----HGEGFPQLKHLEVVENS  333 (508)
Q Consensus       268 ~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~  333 (508)
                                          +. ....+++|+.|+++++ .++.+....     .....++|+.|++.+++
T Consensus       235 --------------------p~-~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         235 --------------------PG-GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             --------------------CT-TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             --------------------cc-ccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence                                11 1235789999999875 466543211     12456889999999864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=6.9e-15  Score=130.08  Aligned_cols=180  Identities=22%  Similarity=0.259  Sum_probs=142.8

Q ss_pred             EeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccE
Q 047733           45 SLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQT  124 (508)
Q Consensus        45 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~  124 (508)
                      .+....+.+......+..|+.|++.++.+            ..++.  +..+++|++|++++|.++.++. ++.+++|++
T Consensus        30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i------------~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~   94 (210)
T d1h6ta2          30 NLKKKSVTDAVTQNELNSIDQIIANNSDI------------KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGW   94 (210)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCC------------CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             HhCcCccCCccCHHHhcCccEEECcCCCC------------CCchh--HhhCCCCCEEeCCCccccCccc-cccCccccc
Confidence            34444443332223577899999998433            33332  3789999999999999998874 788999999


Q ss_pred             EeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCcc
Q 047733          125 LSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMW  204 (508)
Q Consensus       125 L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  204 (508)
                      |++++|+++++..++.+++|+.|+++++.+..++ .+..+++|+.+++++|. +...+.  ...+++|+++++.+|.+. 
T Consensus        95 L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~~--~~~l~~L~~l~l~~n~l~-  169 (210)
T d1h6ta2          95 LFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-  169 (210)
T ss_dssp             EECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC-
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccccccc-cccccc--cccccccccccccccccc-
Confidence            9999999998667899999999999999887765 57889999999999977 655554  678999999999998875 


Q ss_pred             ccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEe
Q 047733          205 GKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILI  258 (508)
Q Consensus       205 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~  258 (508)
                                   .+..++.+++|+.|++++|....++ .+..+++|+.|+++.
T Consensus       170 -------------~i~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         170 -------------DIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -------------CCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             -------------ccccccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence                         2245888999999999999877765 477899999998863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1e-14  Score=135.62  Aligned_cols=203  Identities=23%  Similarity=0.359  Sum_probs=140.4

Q ss_pred             CCCCCcCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecC-C
Q 047733           31 SWPDKDALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFAR-M  107 (508)
Q Consensus        31 ~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~  107 (508)
                      ++|. .++++++.|++++|.+++++.  +..+++|+.|++++|.+            ..++...+..+..++.+++.. +
T Consensus        25 ~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l------------~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          25 AVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL------------ARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             SCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC------------CEECTTTTTTCTTCCEEECCSCT
T ss_pred             ccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccc------------ccccccccccccccccccccccc
Confidence            4443 567889999999999998876  34899999999998544            333434446667777776653 3


Q ss_pred             cCCCC-chhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccCh
Q 047733          108 HLLPL-PSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPP  183 (508)
Q Consensus       108 ~~~~l-~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~  183 (508)
                      .+..+ +..+.++++|++|++++|.+..  +..+....+|+++++++|.++.+|. .+..+++|++|++++|. +..++.
T Consensus        92 ~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~  170 (284)
T d1ozna_          92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPE  170 (284)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECT
T ss_pred             ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccch
Confidence            44454 3557777788888888777655  3556667778888888877776653 35567778888887776 666666


Q ss_pred             hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC-CCccCCCccEEEEEec
Q 047733          184 NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR-DLSFFKMLQRYSILIG  259 (508)
Q Consensus       184 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~  259 (508)
                      ..+..+++|+++++..|.++...            +..+..+++|+.|+++.+....++. .+..+++|+.+.+.+.
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~------------~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVH------------PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEEC------------TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             hhhccccccchhhhhhccccccC------------hhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            55677778888887777665322            2456677777888887777555553 4466777777777543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.58  E-value=2.4e-13  Score=129.98  Aligned_cols=120  Identities=28%  Similarity=0.304  Sum_probs=64.2

Q ss_pred             CCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCC
Q 047733           96 MRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNC  175 (508)
Q Consensus        96 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~  175 (508)
                      .++|++|++++|.++++|..+   .+|+.|++.+|.++....+  .+.|++|++++|.+..+|. +..+++|++|+++++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh--ccccccccccccccccccc-hhhhccceeeccccc
Confidence            345666677766666666433   3566666666665542221  1346666666666666653 456666666666665


Q ss_pred             CCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCcc
Q 047733          176 FNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT  240 (508)
Q Consensus       176 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  240 (508)
                      . +...+.    ....+..+.+..+...              ....++.++.++.+.+.++....
T Consensus       131 ~-~~~~~~----~~~~l~~l~~~~~~~~--------------~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         131 S-LKKLPD----LPPSLEFIAAGNNQLE--------------ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             C-CSCCCC----CCTTCCEEECCSSCCS--------------SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             c-cccccc----ccccccchhhcccccc--------------ccccccccccceecccccccccc
Confidence            4 333332    2234445554433322              12334556666666666555433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.54  E-value=3.8e-15  Score=140.65  Aligned_cols=244  Identities=16%  Similarity=0.206  Sum_probs=176.8

Q ss_pred             CcccEEEeecCCCCC---CCCC-CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-Cc
Q 047733           39 KVCTAISLKNSNISE---LPQV-FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LP  113 (508)
Q Consensus        39 ~~lr~L~l~~~~~~~---l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~  113 (508)
                      .+|+.|+++++.+..   +|.. ..+++|++|++++          ++...+.+|..+ +++++|++|++++|.+.. .+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~----------~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~  118 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG----------INNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIP  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE----------ETTEESCCCGGG-GGCTTCSEEEEEEECCEEECC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccc----------cccccccccccc-ccccccchhhhcccccccccc
Confidence            369999999998853   5554 4999999999986          134455677776 899999999999999985 45


Q ss_pred             hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCC-ceEeccCCCCCCccChhhhhcC
Q 047733          114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHL-RLLDLSNCFNLKVIPPNVISSL  189 (508)
Q Consensus       114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L-~~L~l~~~~~~~~~~~~~l~~l  189 (508)
                      ..+..+.+|+++++++|.+..  |..++++++|+++++++|.+. .+|..+..+.++ +.++++.|. +....+..+..+
T Consensus       119 ~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~-l~~~~~~~~~~l  197 (313)
T d1ogqa_         119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANL  197 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGC
T ss_pred             ccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccc-cccccccccccc
Confidence            678899999999999998554  689999999999999999877 788888888776 788888877 443333335555


Q ss_pred             CCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCC
Q 047733          190 SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSD  269 (508)
Q Consensus       190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~  269 (508)
                      . ...+++..+.....            .+..+..+++++.+++.++.....+..+..+++|+.|.++.+...       
T Consensus       198 ~-~~~l~l~~~~~~~~------------~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~-------  257 (313)
T d1ogqa_         198 N-LAFVDLSRNMLEGD------------ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-------  257 (313)
T ss_dssp             C-CSEEECCSSEEEEC------------CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-------
T ss_pred             c-cccccccccccccc------------ccccccccccccccccccccccccccccccccccccccCccCeec-------
Confidence            4 44677776654422            335567788999999888875555556667788888877543311       


Q ss_pred             CccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCC
Q 047733          270 DISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENS  333 (508)
Q Consensus       270 ~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  333 (508)
                                      .......+.+++|++|+++++ .++...+  ....+++|+.+.+.+++
T Consensus       258 ----------------g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP--~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         258 ----------------GTLPQGLTQLKFLHSLNVSFN-NLCGEIP--QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ----------------ECCCGGGGGCTTCCEEECCSS-EEEEECC--CSTTGGGSCGGGTCSSS
T ss_pred             ----------------ccCChHHhCCCCCCEEECcCC-cccccCC--CcccCCCCCHHHhCCCc
Confidence                            011112346789999999875 3443222  23567788888887765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.3e-16  Score=146.71  Aligned_cols=96  Identities=19%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             cEEEecCCcCCCCchhhccCc--cccEEeccCCCCCC-ccccCCCCCCcEEEccCCCch--hhHHHhccCCCCceEeccC
Q 047733          100 RVLDFARMHLLPLPSSLRLFQ--NLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDME--KLVEEIGQLTHLRLLDLSN  174 (508)
Q Consensus       100 ~~L~l~~~~~~~l~~~~~~l~--~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~  174 (508)
                      +.+|++++.+.  |..++++.  ....+.+....... ........+|++|+++++.+.  .++..+.++++|++|++.+
T Consensus         3 ~~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            46777777653  22222211  23344444333333 233444567777777776554  3444456666777777666


Q ss_pred             CCCCCc-cChhhhhcCCCCcEEEeec
Q 047733          175 CFNLKV-IPPNVISSLSQLEELYIGE  199 (508)
Q Consensus       175 ~~~~~~-~~~~~l~~l~~L~~L~l~~  199 (508)
                      |. +.+ .+.. +.++++|++|++++
T Consensus        81 ~~-l~~~~~~~-l~~~~~L~~L~Ls~  104 (284)
T d2astb2          81 LR-LSDPIVNT-LAKNSNLVRLNLSG  104 (284)
T ss_dssp             CB-CCHHHHHH-HTTCTTCSEEECTT
T ss_pred             cC-CCcHHHHH-HhcCCCCcCccccc
Confidence            64 222 2222 34444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.9e-13  Score=122.30  Aligned_cols=167  Identities=21%  Similarity=0.383  Sum_probs=138.8

Q ss_pred             cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733           36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS  115 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  115 (508)
                      ..++++++|++++|.+.++.++..+++++++.+.+|..            ..++.  +.++++|+.++++++....++. 
T Consensus        60 ~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~------------~~i~~--l~~l~~L~~l~l~~~~~~~~~~-  124 (227)
T d1h6ua2          60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL------------KNVSA--IAGLQSIKTLDLTSTQITDVTP-  124 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC------------SCCGG--GTTCTTCCEEECTTSCCCCCGG-
T ss_pred             hcCCCCcEeecCCceeeccccccccccccccccccccc------------ccccc--ccccccccccccccccccccch-
Confidence            56899999999999999888888999999999998433            23332  4789999999999998776543 


Q ss_pred             hccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733          116 LRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL  195 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  195 (508)
                      +...+.++.+.++++.+.....+.+.++|++|+++++.+...+ .+.++++|++|++++|. +.+++.  +..+++|++|
T Consensus       125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~-l~~l~~--l~~l~~L~~L  200 (227)
T d1h6ua2         125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNK-ISDISP--LASLPNLIEV  200 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEE
T ss_pred             hccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCCc-cCCChh--hcCCCCCCEE
Confidence            6678889999999988777566778899999999999887654 37899999999999986 777766  7899999999


Q ss_pred             EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEec
Q 047733          196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILI  235 (508)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  235 (508)
                      ++++|+++              .+..++.+++|+.|++++
T Consensus       201 ~Ls~N~lt--------------~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         201 HLKNNQIS--------------DVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             ECTTSCCC--------------BCGGGTTCTTCCEEEEEE
T ss_pred             ECcCCcCC--------------CCcccccCCCCCEEEeeC
Confidence            99999876              224588999999999863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.3e-13  Score=125.14  Aligned_cols=188  Identities=18%  Similarity=0.210  Sum_probs=128.9

Q ss_pred             EEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCcc
Q 047733           43 AISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQN  121 (508)
Q Consensus        43 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~  121 (508)
                      .++.+++.+..+|... -+++++|++++|            .+..+|...|.++++|++|+++++.+..++ ..+..+..
T Consensus        15 ~v~c~~~~L~~iP~~i-p~~~~~L~Ls~N------------~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~   81 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI-PAASQRIFLHGN------------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL   81 (284)
T ss_dssp             EEECCSSCCSSCCTTC-CTTCSEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             EEEcCCCCCCccCCCC-CCCCCEEECcCC------------cCCCCCHHHhhcccccccccccccccccccccccccccc
Confidence            4556666677777533 257888998883            344555555688888999999988887544 45667778


Q ss_pred             ccEEeccCCC-CCC--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733          122 LQTLSLDYCE-LGD--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI  197 (508)
Q Consensus       122 L~~L~l~~~~-l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  197 (508)
                      ++.+....+. ++.  +..+.++++|++|++++|.+..++ ..+..+.+|+.+++.+|. ++.++...+..+++|+.|++
T Consensus        82 ~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l  160 (284)
T d1ozna_          82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFL  160 (284)
T ss_dssp             CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhccc
Confidence            8888765544 665  467888888999998888776554 345677888888888876 77777655777888888888


Q ss_pred             ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEE
Q 047733          198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSI  256 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i  256 (508)
                      .+|.+..-.            ...+..+++|+.+.+.++..... |..+..+++|+.+++
T Consensus       161 ~~N~l~~l~------------~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         161 HGNRISSVP------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             CSSCCCEEC------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCcccccc------------hhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence            888765221            24466777888888877764333 344444555554444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.3e-15  Score=136.37  Aligned_cols=104  Identities=19%  Similarity=0.234  Sum_probs=75.9

Q ss_pred             CccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--c-cccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEecc
Q 047733           98 ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--I-AIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLS  173 (508)
Q Consensus        98 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~-~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~  173 (508)
                      .+..+.++.+..............|++|++++|.++.  + ..+..+++|++|+++++.+. ..+..+.++++|++|+++
T Consensus        24 ~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            4556666666554333334456689999999998765  3 56788999999999999776 556778889999999999


Q ss_pred             CCCCCCccC-hhhhhcCCCCcEEEeecCC
Q 047733          174 NCFNLKVIP-PNVISSLSQLEELYIGESP  201 (508)
Q Consensus       174 ~~~~~~~~~-~~~l~~l~~L~~L~l~~~~  201 (508)
                      +|..+++.. ..+...+++|++|++++|.
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~  132 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCF  132 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             ccccccccccchhhHHHHhcccccccccc
Confidence            987665432 2224578888888888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=9.3e-13  Score=105.15  Aligned_cols=58  Identities=24%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             CCccEEEecCCcCCCCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCc
Q 047733           97 RELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDM  154 (508)
Q Consensus        97 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i  154 (508)
                      .+|++|++++|.++.+|..++.+++|++|++++|.++.++.++.+++|++|++++|.+
T Consensus        20 ~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3          20 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred             CCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCcc
Confidence            3333333333333333333333333333333333333322233333333333333333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4e-13  Score=112.89  Aligned_cols=108  Identities=19%  Similarity=0.190  Sum_probs=57.7

Q ss_pred             hCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEec
Q 047733           94 TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDL  172 (508)
Q Consensus        94 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l  172 (508)
                      .+..+++.|++++|+++.++..+..+++|++|++++|.++....+..+++|++|++++|.++.++.. +..+++|++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            3445555666666655555544455555666666665555544455555666666666655555433 234555666666


Q ss_pred             cCCCCCCccCh-hhhhcCCCCcEEEeecCCC
Q 047733          173 SNCFNLKVIPP-NVISSLSQLEELYIGESPI  202 (508)
Q Consensus       173 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  202 (508)
                      ++|. +..++. ..+..+++|++|++++|.+
T Consensus        95 ~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          95 TNNS-LVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CSCC-CCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cccc-ccccccccccccccccchhhcCCCcc
Confidence            5554 433332 1244555555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=3.3e-12  Score=101.86  Aligned_cols=115  Identities=18%  Similarity=0.230  Sum_probs=93.6

Q ss_pred             cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCcc
Q 047733           42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQN  121 (508)
Q Consensus        42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~  121 (508)
                      |.|++++|.+..++.+..+++|+.|++++|            .+..+|..+ ..+++|++|++++|.++.+|. ++++++
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N------------~l~~lp~~~-~~l~~L~~L~l~~N~i~~l~~-~~~l~~   66 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN------------RLRALPPAL-AALRCLEVLQASDNALENVDG-VANLPR   66 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSS------------CCCCCCGGG-GGCTTCCEEECCSSCCCCCGG-GTTCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCC------------ccCcchhhh-hhhhcccccccccccccccCc-cccccc
Confidence            689999999999988779999999999994            445566554 789999999999999998875 899999


Q ss_pred             ccEEeccCCCCCC-c--cccCCCCCCcEEEccCCCchhhH---H-HhccCCCCceE
Q 047733          122 LQTLSLDYCELGD-I--AIVGDLKTLVILTLRGSDMEKLV---E-EIGQLTHLRLL  170 (508)
Q Consensus       122 L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~~lp---~-~~~~l~~L~~L  170 (508)
                      |++|++++|++++ +  ..++.+++|++|++++|.+...+   . ....+++|+.+
T Consensus        67 L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999999999886 3  56888999999999999776432   1 23345555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.1e-12  Score=108.41  Aligned_cols=100  Identities=19%  Similarity=0.234  Sum_probs=42.9

Q ss_pred             CCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH--HhccCCCCceE
Q 047733           95 GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLL  170 (508)
Q Consensus        95 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L  170 (508)
                      .+++|++|++++|.+++++ .+..+++|++|++++|+++. + ..+..+++|++|++++|.+..++.  .+..+++|++|
T Consensus        39 ~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          39 TLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             GTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             ccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchh
Confidence            3444444444444444432 23444444444444444443 2 122334444444444444443321  23444455555


Q ss_pred             eccCCCCCCccCh---hhhhcCCCCcEEE
Q 047733          171 DLSNCFNLKVIPP---NVISSLSQLEELY  196 (508)
Q Consensus       171 ~l~~~~~~~~~~~---~~l~~l~~L~~L~  196 (508)
                      ++++|. +...+.   .++..+|+|+.|+
T Consensus       118 ~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         118 CILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             hcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence            555444 333331   1244555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.2e-11  Score=105.52  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=15.2

Q ss_pred             CccEEEecCCcCCCCch-hhccCccccEEeccCCC
Q 047733           98 ELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCE  131 (508)
Q Consensus        98 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~  131 (508)
                      ++++|++++|.++.+|. .|.++++|++|++++|.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~   64 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND   64 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCT
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhcccc
Confidence            34444444444444432 24444444444444444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.6e-11  Score=109.23  Aligned_cols=196  Identities=16%  Similarity=0.157  Sum_probs=127.2

Q ss_pred             cCCCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecC-CcCCC-
Q 047733           36 DALKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFAR-MHLLP-  111 (508)
Q Consensus        36 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~-  111 (508)
                      +++++++.|++++|.+..++..  .++++|++|++++|.           ....++...|.++..++.+++.. +.+.. 
T Consensus        26 ~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~-----------~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~   94 (242)
T d1xwdc1          26 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND-----------VLEVIEADVFSNLPKLHEIRIEKANNLLYI   94 (242)
T ss_dssp             CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCT-----------TCCEECSSSEESCTTCCEEEEECCTTCCEE
T ss_pred             CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhcccc-----------ccceeecccccccccccccccccccccccc
Confidence            4567899999999999888763  489999999999943           33334444457788888888765 45554 


Q ss_pred             CchhhccCccccEEeccCCCCCCc---cccCCCCCCcEEEccCCCchhhHHH-hccC-CCCceEeccCCCCCCccChhhh
Q 047733          112 LPSSLRLFQNLQTLSLDYCELGDI---AIVGDLKTLVILTLRGSDMEKLVEE-IGQL-THLRLLDLSNCFNLKVIPPNVI  186 (508)
Q Consensus       112 l~~~~~~l~~L~~L~l~~~~l~~~---~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l-~~L~~L~l~~~~~~~~~~~~~l  186 (508)
                      .+..+..+++|++++++++.+..+   ..+..+..+..+...++.+..++.. +..+ ..++.|++..+. +..++.. .
T Consensus        95 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i~~~-~  172 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNC-A  172 (242)
T ss_dssp             CTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-T
T ss_pred             ccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc-ccccccc-c
Confidence            345677888888888888887652   3344455565556666666655432 3334 367778887766 6667665 3


Q ss_pred             hcCCCCcEEE-eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCC-CccCCCccEEEE
Q 047733          187 SSLSQLEELY-IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRD-LSFFKMLQRYSI  256 (508)
Q Consensus       187 ~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i  256 (508)
                      ....+++.+. +.++.++.-.            ...+..+++|+.|+++++....+|.. +..+++|+.+.+
T Consensus       173 ~~~~~l~~~~~l~~n~l~~l~------------~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         173 FNGTQLDELNLSDNNNLEELP------------NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTTCCEEEEECTTCTTCCCCC------------TTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccchhhhcccccccccccccc------------HHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            4455555554 3444443111            13367778888888888887777664 344444444433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=3.4e-11  Score=104.22  Aligned_cols=122  Identities=16%  Similarity=0.236  Sum_probs=66.4

Q ss_pred             EEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCcc
Q 047733           43 AISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQN  121 (508)
Q Consensus        43 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~  121 (508)
                      +++.+++.+..+|... .+++++|++++|.+           ...++...|.++++|+.|++++|.+..++ ..+..+++
T Consensus        12 ~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i-----------~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~   79 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNEL-----------GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSCCC-----------CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             EEEEeCCCcCccCCCC-CCCCCEEEeCCCCC-----------cccccccccCCCceEeeeeccccccccccccccccccc
Confidence            4555555565555432 14566666666222           11233333456666666666666665433 44555666


Q ss_pred             ccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCC
Q 047733          122 LQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCF  176 (508)
Q Consensus       122 L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~  176 (508)
                      |++|++++|+++.  +..|.++++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus        80 L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            6666666666555  24455666666666666666655432 4455566666665554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=6.7e-13  Score=115.56  Aligned_cols=104  Identities=17%  Similarity=0.295  Sum_probs=58.9

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCCcccc
Q 047733           59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIV  138 (508)
Q Consensus        59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~i  138 (508)
                      .+++|+.|++++|.+            ..++.  +..+++|++|++++|.++.++..+..++.|++|++++|.++.+..+
T Consensus        46 ~L~~L~~L~Ls~n~I------------~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~  111 (198)
T d1m9la_          46 TLKACKHLALSTNNI------------EKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGI  111 (198)
T ss_dssp             HTTTCCEEECSEEEE------------SCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHH
T ss_pred             cccccceeECcccCC------------CCccc--ccCCccccChhhcccccccccccccccccccccccccccccccccc
Confidence            566666666665222            22221  3556666666666666665555444455566666666666554445


Q ss_pred             CCCCCCcEEEccCCCchhhH--HHhccCCCCceEeccCCC
Q 047733          139 GDLKTLVILTLRGSDMEKLV--EEIGQLTHLRLLDLSNCF  176 (508)
Q Consensus       139 ~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~  176 (508)
                      ..+++|++|++++|.++.++  ..+..+++|+.|++++|+
T Consensus       112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            55666666666666555444  235566666666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=5e-11  Score=103.13  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=87.8

Q ss_pred             CCCCChhhhhCCCCccEEEecCCcCCC-C-chhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH-
Q 047733           85 SRRIPDKFFTGMRELRVLDFARMHLLP-L-PSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE-  159 (508)
Q Consensus        85 ~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-  159 (508)
                      ...+|..+   ..++++|++++|.++. + +..|..+++|+.|++++|.+..  +..+..+++|++|++++|.++.+|. 
T Consensus        20 L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~   96 (192)
T d1w8aa_          20 LKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             CSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             cCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHH
Confidence            34455433   2578888899888864 3 3567888888888888888776  4777788888888888888887764 


Q ss_pred             HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCc
Q 047733          160 EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIM  203 (508)
Q Consensus       160 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  203 (508)
                      .+.++++|++|+|++|. +..+++..+..+++|++|++++|.+.
T Consensus        97 ~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             HHhCCCcccccccCCcc-ccccCHHHhcCCcccccccccccccc
Confidence            46778888888888877 77787766778888888888877654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.05  E-value=2.1e-12  Score=112.34  Aligned_cols=115  Identities=21%  Similarity=0.294  Sum_probs=84.9

Q ss_pred             CCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhcc
Q 047733           85 SRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQ  163 (508)
Q Consensus        85 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~  163 (508)
                      +..++.++ ..+++|++|++++|.++.++ .+..+++|++|++++|.+++ +.....+++|++|++++|.++.++ .+..
T Consensus        37 i~~l~~sl-~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~  113 (198)
T d1m9la_          37 IEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             CCCCHHHH-HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHH
T ss_pred             hhhhhhHH-hcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-cccc
Confidence            34455554 77888888888888888775 47788888888888888777 444444567888888888887765 4677


Q ss_pred             CCCCceEeccCCCCCCccCh-hhhhcCCCCcEEEeecCCCc
Q 047733          164 LTHLRLLDLSNCFNLKVIPP-NVISSLSQLEELYIGESPIM  203 (508)
Q Consensus       164 l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  203 (508)
                      +++|++|++++|. +..++. ..+..+++|+.|++++|.+.
T Consensus       114 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccch-hccccccccccCCCccceeecCCCccc
Confidence            7888888888876 555543 23677888888888887654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.5e-12  Score=128.94  Aligned_cols=171  Identities=14%  Similarity=0.060  Sum_probs=80.8

Q ss_pred             ccceeEEEecCCCCccccccCC--cCCCCCCCcEEEEecCCCceee-eecccCCCCCCCcCcCcceeeccCccccccccc
Q 047733          295 LKGIKELCLGGSLDMKSVLYGS--HGEGFPQLKHLEVVENSNLLCV-VDTVDRATAPTTAFPVLESLFLRDLRNLEKICR  371 (508)
Q Consensus       295 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~i-~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~  371 (508)
                      ...++.+++.++..........  .....+.++.+++.++. +... .......  .....+.|+.+.+.++. +.....
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~~~~l~~~--l~~~~~~L~~l~l~~~~-l~~~~~  329 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCET--LLEPGCQLESLWVKSCS-FTAACC  329 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHH--HTSTTCCCCEEECTTSC-CBGGGH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-ccccccchhhcc--ccccccccccccccccc-hhhhhh
Confidence            4567777776653322211000  01235667777776642 2210 0000000  01123567777777764 222111


Q ss_pred             Ccc--cccccccCCeEEEcCCCCcceecchhh----hhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccC
Q 047733          372 GPL--AAESFCQLRDMRVNGCDKLKNVFPLVI----GRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLT  445 (508)
Q Consensus       372 ~~~--~~~~~~~L~~L~l~~c~~l~~l~~~~~----~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~  445 (508)
                      ..+  .....++|++|+++++ .+.+.+...+    ....+.|++|++++|. +.+......       ...+..+++|+
T Consensus       330 ~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l-------~~~l~~~~~L~  400 (460)
T d1z7xw1         330 SHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSL-------AATLLANHSLR  400 (460)
T ss_dssp             HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHH-------HHHHHHCCCCC
T ss_pred             hhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHH-------HHHHhcCCCCC
Confidence            111  1123467888888876 4544221111    1235668888888874 433211000       11233467888


Q ss_pred             eeEcCCCccccccccCcc----ccccCCccEEEEeeCC
Q 047733          446 ILELCYLPQLTSFCTGDL----HFEFPSLEKLRILECP  479 (508)
Q Consensus       446 ~L~l~~c~~L~~~~~~~~----~~~~p~L~~L~i~~C~  479 (508)
                      +|+++++ ++++-....+    ......|+.|++.++.
T Consensus       401 ~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         401 ELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             EEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             EEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            8888876 5554322111    1122358888887765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.5e-08  Score=81.43  Aligned_cols=101  Identities=17%  Similarity=0.192  Sum_probs=61.9

Q ss_pred             EEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCc
Q 047733           43 AISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQ  120 (508)
Q Consensus        43 ~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~  120 (508)
                      .++..++.+.+++... .+++|+.|++.+           ++.+..++...|.++++|+.|++++|.++.++ ..|..++
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~-----------n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIEN-----------QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCS-----------CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             eEEecCCCCccCcccccCccccCeeecCC-----------CccccccCchhhccccccCcceeeccccCCcccccccccc
Confidence            4555666555554433 667777777765           23455555555567777777777777776653 4566677


Q ss_pred             cccEEeccCCCCCC-ccccCCCCCCcEEEccCCCc
Q 047733          121 NLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDM  154 (508)
Q Consensus       121 ~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i  154 (508)
                      +|++|++++|+++. +..+.....|++|++++|.+
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cccceeccCCCCcccChhhhccccccccccCCCcc
Confidence            77777777777666 43333344566677766644

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.4e-08  Score=83.88  Aligned_cols=83  Identities=25%  Similarity=0.130  Sum_probs=38.7

Q ss_pred             hCCCCccEEEecCC-cCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHHhccCCCCce
Q 047733           94 TGMRELRVLDFARM-HLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRL  169 (508)
Q Consensus        94 ~~l~~L~~L~l~~~-~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~  169 (508)
                      ..+++|+.|++.++ .++.++ ..|..+++|+.|++++|+++.  +..+..+++|++|+|++|.++.+|..+....+|++
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~  107 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQE  107 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCE
T ss_pred             cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccc
Confidence            34445555555433 244433 234445555555555555444  23344455555555555555544443333334445


Q ss_pred             EeccCCC
Q 047733          170 LDLSNCF  176 (508)
Q Consensus       170 L~l~~~~  176 (508)
                      |++++|+
T Consensus       108 L~L~~Np  114 (156)
T d2ifga3         108 LVLSGNP  114 (156)
T ss_dssp             EECCSSC
T ss_pred             cccCCCc
Confidence            5554444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.9e-10  Score=111.16  Aligned_cols=173  Identities=17%  Similarity=0.068  Sum_probs=97.5

Q ss_pred             hcccceeEEEecCCCCccccc---cCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCccccccc
Q 047733          293 MQLKGIKELCLGGSLDMKSVL---YGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKI  369 (508)
Q Consensus       293 ~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~  369 (508)
                      ...+.++.+.+.++.......   ........+.++.+++.++. +..........  .....+.++.+.+.+++ +...
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~-i~~~~~~~~~~--~l~~~~~l~~l~l~~n~-i~~~  298 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCR--VLRAKESLKELSLAGNE-LGDE  298 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHH--HHHHCTTCCEEECTTCC-CHHH
T ss_pred             cccccccccchhhccccccccchhhccccccccccccccccccc-ccccccccccc--ccccccccccccccccc-cccc
Confidence            356788899987764332211   11112456889999998864 22110000000  12246788999988754 3221


Q ss_pred             ccCccc---ccccccCCeEEEcCCCCcceecch---hhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCce-eecc
Q 047733          370 CRGPLA---AESFCQLRDMRVNGCDKLKNVFPL---VIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQV-IELT  442 (508)
Q Consensus       370 ~~~~~~---~~~~~~L~~L~l~~c~~l~~l~~~---~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~-~~~~  442 (508)
                      ....+.   ....+.|+.+++++|. +......   ......++|++|++++++ +.+......       ...+ ...+
T Consensus       299 ~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l-------~~~l~~~~~  369 (460)
T d1z7xw1         299 GARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVREL-------CQGLGQPGS  369 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHH-------HHHHTSTTC
T ss_pred             ccchhhccccccccccccccccccc-hhhhhhhhcccccccccchhhhheeeec-ccCcccchh-------hhhhhcccC
Confidence            110110   1234689999999984 4432211   123556799999999875 543211000       0011 1356


Q ss_pred             ccCeeEcCCCccccccccCcc---ccccCCccEEEEeeCC
Q 047733          443 QLTILELCYLPQLTSFCTGDL---HFEFPSLEKLRILECP  479 (508)
Q Consensus       443 ~L~~L~l~~c~~L~~~~~~~~---~~~~p~L~~L~i~~C~  479 (508)
                      .|++|++++| ++++.....+   ...+++|++|++++++
T Consensus       370 ~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         370 VLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             CCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCCc
Confidence            7999999999 6876433222   1246899999999884

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.66  E-value=1.2e-09  Score=103.60  Aligned_cols=189  Identities=15%  Similarity=0.106  Sum_probs=95.9

Q ss_pred             CCcccEEEeecCCCCC-----CC-CCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC
Q 047733           38 LKVCTAISLKNSNISE-----LP-QVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP  111 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~-----l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  111 (508)
                      .++++.|++++|.+..     +. .+...++|+.|.+.++..+......+ .....+. ..+...++|+.|++++|.++.
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~l~-~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP-EALRLLL-QALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSH-HHHHHHH-HHHTTCTTCCEEECCSCCCCT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccc-hHHHHHH-HHHhhCCCccccccccccccc
Confidence            4567777777776632     11 12256777777776633222111000 0000011 112456677777777776642


Q ss_pred             -----CchhhccCccccEEeccCCCCCC--ccc-------------cCCCCCCcEEEccCCCch-----hhHHHhccCCC
Q 047733          112 -----LPSSLRLFQNLQTLSLDYCELGD--IAI-------------VGDLKTLVILTLRGSDME-----KLVEEIGQLTH  166 (508)
Q Consensus       112 -----l~~~~~~l~~L~~L~l~~~~l~~--~~~-------------i~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~  166 (508)
                           +...+...++|+.|++++|.+..  ...             ....+.|+.+.++++.+.     .+...+..+.+
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence                 33344556677777777776532  111             123456666766666543     33444555666


Q ss_pred             CceEeccCCCCCCcc-----ChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          167 LRLLDLSNCFNLKVI-----PPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       167 L~~L~l~~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                      |++|++++|. +...     ....+..+++|++|++++|.+...        +...+...+..+++|+.|++++|.
T Consensus       188 L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~--------g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         188 LHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL--------GSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             CCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH--------HHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hccccccccc-ccccccccchhhhhcchhhhccccccccccccc--------ccccccccccccccchhhhhhcCc
Confidence            7777776665 3221     011134556666666666654311        111233445566666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.53  E-value=5.5e-08  Score=91.84  Aligned_cols=203  Identities=15%  Similarity=0.203  Sum_probs=118.1

Q ss_pred             CCcccEEEeecCCCCCCCC------------CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEec
Q 047733           38 LKVCTAISLKNSNISELPQ------------VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFA  105 (508)
Q Consensus        38 ~~~lr~L~l~~~~~~~l~~------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  105 (508)
                      .++++.+++.++.......            +..+++|+.|++.+|.....       ....+.. ++...++|++|+++
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-------~~~~l~~-~l~~~~~L~~L~l~  129 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT-------AQEPLID-FLSKHTPLEHLYLH  129 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT-------THHHHHH-HHHHCTTCCEEECC
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc-------cccchhh-hhcccccchheecc
Confidence            4678888888765532211            12578888888887432211       0111222 23567788888888


Q ss_pred             CCcCCC-----Cch---------hhccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCchh------hHH
Q 047733          106 RMHLLP-----LPS---------SLRLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDMEK------LVE  159 (508)
Q Consensus       106 ~~~~~~-----l~~---------~~~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~~------lp~  159 (508)
                      +|.++.     +..         .....+.|+.+.++++.+++  .    ..+.....|++|++++|.+..      +..
T Consensus       130 ~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~  209 (344)
T d2ca6a1         130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE  209 (344)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhh
Confidence            887631     111         11245567888888777654  1    234566788888888886652      223


Q ss_pred             HhccCCCCceEeccCCCCCCc-----cChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccC--CCCccEEE
Q 047733          160 EIGQLTHLRLLDLSNCFNLKV-----IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN--LSKLTSLE  232 (508)
Q Consensus       160 ~~~~l~~L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~  232 (508)
                      .+..+++|++|++++|. ++.     +... +..+++|++|++++|.+...        +...+...+..  .+.|++|+
T Consensus       210 ~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~-l~~~~~L~~L~Ls~n~i~~~--------g~~~l~~~l~~~~~~~L~~L~  279 (344)
T d2ca6a1         210 GLAYCQELKVLDLQDNT-FTHLGSSALAIA-LKSWPNLRELGLNDCLLSAR--------GAAAVVDAFSKLENIGLQTLR  279 (344)
T ss_dssp             TGGGCTTCCEEECCSSC-CHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHH--------HHHHHHHHHHTCSSCCCCEEE
T ss_pred             hhcchhhhccccccccc-cccccccccccc-ccccccchhhhhhcCccCch--------hhHHHHHHhhhccCCCCCEEE
Confidence            35567788888888776 432     2222 56778888888888776421        11223344443  34688888


Q ss_pred             EecccCcc-----CCCCC-ccCCCccEEEEEe
Q 047733          233 ILIEDEKT-----LPRDL-SFFKMLQRYSILI  258 (508)
Q Consensus       233 l~~~~~~~-----~~~~l-~~~~~L~~L~i~~  258 (508)
                      +++|..+.     +...+ ...++|+.+.+.+
T Consensus       280 ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         280 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             CCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             CCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            88776322     22223 2456777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.2e-06  Score=70.78  Aligned_cols=37  Identities=24%  Similarity=0.183  Sum_probs=15.9

Q ss_pred             CCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCC
Q 047733          140 DLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCF  176 (508)
Q Consensus       140 ~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~  176 (508)
                      .+++|++|++++|.++.++. ...+..+|++|++.+|+
T Consensus        89 ~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          89 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            34444444444444443332 11122345555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=2.7e-05  Score=63.92  Aligned_cols=82  Identities=23%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             hhhhhCCCCccEEEecCCcCCCC---chhhccCccccEEeccCCCCCCcc--ccCCCCCCcEEEccCCCchhh-------
Q 047733           90 DKFFTGMRELRVLDFARMHLLPL---PSSLRLFQNLQTLSLDYCELGDIA--IVGDLKTLVILTLRGSDMEKL-------  157 (508)
Q Consensus        90 ~~~~~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~l~~~~--~i~~l~~L~~L~l~~~~i~~l-------  157 (508)
                      ..++.+++.|++|++++|.++.+   +..+..+++|++|++++|.+++..  ...+..+|+.|++.+|.+...       
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            34456899999999999999865   455778999999999999998832  223445799999999976521       


Q ss_pred             -HHHhccCCCCceEe
Q 047733          158 -VEEIGQLTHLRLLD  171 (508)
Q Consensus       158 -p~~~~~l~~L~~L~  171 (508)
                       ...+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence             12345677777775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.31  E-value=0.00027  Score=58.00  Aligned_cols=83  Identities=12%  Similarity=0.169  Sum_probs=44.7

Q ss_pred             hCCCCccEEEecCC-cCCC-----CchhhccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch-----h
Q 047733           94 TGMRELRVLDFARM-HLLP-----LPSSLRLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME-----K  156 (508)
Q Consensus        94 ~~l~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~-----~  156 (508)
                      .+.+.|+.|+++++ .++.     +...+...+.|++|++++|.+.+  .    ..+...+.|++|++++|.+.     .
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34466666666653 3431     22344455566666666666553  1    23334456666666666554     2


Q ss_pred             hHHHhccCCCCceEeccCCC
Q 047733          157 LVEEIGQLTHLRLLDLSNCF  176 (508)
Q Consensus       157 lp~~~~~l~~L~~L~l~~~~  176 (508)
                      +...+...++|++|+++++.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhCCcCCEEECCCCc
Confidence            33445555666666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.08  E-value=0.0006  Score=55.85  Aligned_cols=83  Identities=11%  Similarity=0.091  Sum_probs=61.9

Q ss_pred             hhCCCCccEEEecCCcCCC-----CchhhccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch------
Q 047733           93 FTGMRELRVLDFARMHLLP-----LPSSLRLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME------  155 (508)
Q Consensus        93 ~~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~------  155 (508)
                      +...+.|+.|++++|.++.     +...+...+.|+.|++++|.+++  .    ..+...+.|++|+++++.+.      
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            3567889999999998852     33456667889999999998875  2    45777788999999876432      


Q ss_pred             --hhHHHhccCCCCceEeccCC
Q 047733          156 --KLVEEIGQLTHLRLLDLSNC  175 (508)
Q Consensus       156 --~lp~~~~~l~~L~~L~l~~~  175 (508)
                        .+...+...++|+.|+++.+
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCCccEeeCcCC
Confidence              35566677788888888664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.86  E-value=0.00099  Score=54.41  Aligned_cols=80  Identities=18%  Similarity=0.185  Sum_probs=43.3

Q ss_pred             hCCCCccEEEecC-CcCCC-----CchhhccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch-----h
Q 047733           94 TGMRELRVLDFAR-MHLLP-----LPSSLRLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME-----K  156 (508)
Q Consensus        94 ~~l~~L~~L~l~~-~~~~~-----l~~~~~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~-----~  156 (508)
                      .+.+.|+.|++++ +.++.     +...+...++|+.|++++|.+++  .    ..+.....++.++++++.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4556666666665 33431     33344455666666666666553  1    23344556666666665443     3


Q ss_pred             hHHHhccCCCCceEecc
Q 047733          157 LVEEIGQLTHLRLLDLS  173 (508)
Q Consensus       157 lp~~~~~l~~L~~L~l~  173 (508)
                      +...+...++|+.+++.
T Consensus        94 l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          94 LVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHGGGGCSSCCEEECC
T ss_pred             HHHHHHhCccccEEeec
Confidence            33445556666655554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.72  E-value=0.00064  Score=55.60  Aligned_cols=115  Identities=14%  Similarity=0.128  Sum_probs=77.2

Q ss_pred             hccCccccEEeccCCC-CCC--c----cccCCCCCCcEEEccCCCch-----hhHHHhccCCCCceEeccCCCCCCc---
Q 047733          116 LRLFQNLQTLSLDYCE-LGD--I----AIVGDLKTLVILTLRGSDME-----KLVEEIGQLTHLRLLDLSNCFNLKV---  180 (508)
Q Consensus       116 ~~~l~~L~~L~l~~~~-l~~--~----~~i~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~---  180 (508)
                      ..+.+.|++|+++++. +++  .    ..+...++|++|++++|.+.     .+...+...++++.+++++|.....   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            4466889999999854 764  2    44567899999999999775     4445567788999999998773222   


Q ss_pred             -cChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733          181 -IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED  237 (508)
Q Consensus       181 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  237 (508)
                       +.. .+...++|+.++++.+.....      ..+..++...+...+.|+.|++.++.
T Consensus        93 ~l~~-~l~~~~~L~~l~L~l~~n~i~------~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVE-ALQSNTSLIELRIDNQSQPLG------NNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHH-GGGGCSSCCEEECCCCSSCCC------HHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHH-HHHhCccccEEeeccCCCcCc------HHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence             122 256778888877764432110      11223455667788889999887654