Citrus Sinensis ID: 047747

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------75
Protein Sequence
MTKRRFRESIKSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKEPLVELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYSSSSSDSDSDSDHSSKNKSNKNGELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQISRNGAGAGSCLVLHSPYSKIILMDEKSRNS
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTKRRFRESIKSFfgsyidpekdeqlkgnkIEIEDKFKKILKLVQDkdlqekdgikEPLVELIEGFHSQYQSLYAQYDNLRGELKKKihgkkenetysssssdsdsdsdhssknksnkngelesEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLedisrdkdnlIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLeehmvfkddeastQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVAslgnqksdLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQAslpqisrngagagsclvlhspyskiilmdeksrns
Flexible Loop (DISEMBL)
mtkrrfresiksffgsyidpekdeqlkgnkIEIEDKFKKILKLvqdkdlqekdGIKEPLVELIEGFHSQYQSLYAQYDNLRGELKKKihgkkenetysssssdsdsdsdhssknksnkngeleSEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNhrledisrdkdnlimEKETVLRRVEEGEKIAEDlrnsadqlneeKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVAslgnqksdlEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQISRNGAGAGSCLVLhspyskiilmdeksrns
Low Complexity Region (SEG)
MTKRRFRESIKSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKEPLVELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYsssssdsdsdsdhssknksnknGELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKasaqitamaaqasLPQISRNGAGAGSCLVLHSPYSKIILMDEKSRNS
Disordered region (IsUnstruct)
*************FG*Y*************IEIEDKFKKILKLVQDKDLQEKDGIKEPLVELIEGFHSQYQSLYAQYDNLR************************************************************************************************LI*********************************************************************I**AEEIIRNLKLEA**LNNDMLEGLAVNAELKQKLSIA**********************************************************************************************************************************************************I*ELQAQVTGLELEL*************************************************************************INDLL*************************************************AVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEV***************LKIEEGFHLTEEKLGLLDGIFELEKT*******************************************GAGSCLVLHSPYSKIIL********
Disordered Region (DISOPRED)
*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************D******
Disordered Region (DISEMBL)
********SIKSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKEPLVELIEGFHSQYQSLYAQYDNLRGELKKKIH******************************************GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKIS*************************ENKSLTLKISEMSNEFQQAQNLIQDLMAESSQ************SSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQISRNGAGAGSCLVLHSPYSKIILMDEKSRNS
Disordered Region (DISPRO)
********SIKSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKEPLVELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYSSSSSDSDSDSDHSSKNKSNKNGELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQISRN****GSCLVLHSPYSKIILMDEK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKRRFRESIKSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKEPLVELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYSSSSSDSDSDSDHSSKNKSNKNGELESEYQKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVSDMKRQLTARSEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMLEGLAVNAELKQKLSIAGELxxxxxxxxxxxxxxxxxxxxxKETVLRRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHEVRxxxxxxxxxxxxxxxxxxxxxxxxxxxxNRDMVVQxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKERGDELTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMVFKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIVNKTEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQISRNGAGAGSCLVLHSPYSKIILMDEKSRNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	748
224058377	1074	predicted protein [Populus trichocarpa]	0.910	0.634	0.553	1e-173
224072140	1277	predicted protein [Populus trichocarpa]	0.804	0.471	0.524	1e-147
255537725	1718	Centromeric protein E, putative [Ricinus	0.787	0.342	0.516	1e-144
356511454	1752	PREDICTED: uncharacterized protein LOC10	0.842	0.359	0.457	1e-127
359473905	1420	PREDICTED: uncharacterized protein LOC10	0.470	0.247	0.537	1e-112
297742307	868	unnamed protein product [Vitis vinifera]	0.458	0.395	0.534	1e-110
449464076	1456	PREDICTED: uncharacterized protein LOC10	0.759	0.390	0.441	1e-107
356527672	977	PREDICTED: uncharacterized protein LOC10	0.624	0.477	0.472	1e-97
186528371	1586	COP1-interactive protein 1 [Arabidopsis	0.874	0.412	0.311	2e-59
10177363	1305	myosin heavy chain-like protein [Arabido	0.453	0.259	0.445	5e-58

>gi|224058377|ref|XP_002299490.1| predicted protein [Populus trichocarpa] gi|222846748|gb|EEE84295.1| predicted protein [Populus trichocarpa]

 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 390/704 (55%), Positives = 510/704 (72%), Gaps = 23/704 (3%)

Query: 31  IEIEDKFKKILKLVQDKDLQEKDGI------KEPLVELIEGFHSQYQSLYAQYDNLRGEL 84
           +EI+DK K+ILKL++++DL+E++G+      KEPL+ELIE    +Y SLY QYD+L+GEL
Sbjct: 11  VEIDDKVKRILKLIKEEDLEEQEGLSEENSKKEPLIELIEDLQKEYHSLYGQYDHLKGEL 70

Query: 85  KKKIHGKKENETYSSSSSDSDSDSDHSSKNKSNKNGELESEYQKTTDGMKQELDAATLEV 144
           +KK+HGK   +T SSSSSDS+SD   SSK+K +KNG LESEYQK  DGMKQ+L+AA LE+
Sbjct: 71  RKKVHGKHGKDTSSSSSSDSESDD--SSKHKGSKNGRLESEYQKIIDGMKQKLEAANLEL 128

Query: 145 SELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELN 204
           +ELK ++TAT EEK+AL LE+++ L +IQE  E+IRNLKLE E  +T+K +L VEN EL 
Sbjct: 129 AELKSKLTATGEEKDALKLEHETGLIKIQEEEEIIRNLKLEVERSDTDKAQLLVENGELK 188

Query: 205 QKLDAAGKIEAELNREVSDM---------KRQLTARSEEK-----EALNLEYQTALSKIQ 250
           QKLDA G IEAELN+ + ++         +++   RS E+     EAL LEY+TAL K Q
Sbjct: 189 QKLDAGGMIEAELNQRLEELNKVKDTLILEKEAATRSIEESEKIAEALKLEYETALIKKQ 248

Query: 251 EAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIM 310
           EAEEIIRNLKLE E  + D  + L  N ELKQKL  AG +EAEL  +LE+++++KD+LI+
Sbjct: 249 EAEEIIRNLKLEVERSDADKAQLLIENGELKQKLDTAGMIEAELYKKLEELNKEKDSLIL 308

Query: 311 EKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSD 370
           EKE  ++  EE EKI EDLR   D L EEK   G+ELE L+ ++S  +QQLES++Q+V+D
Sbjct: 309 EKEAAMQSNEESEKITEDLRTLTDWLQEEKSATGQELEALKAELSITKQQLESAEQQVAD 368

Query: 371 LSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEM 430
              NL  T+EEN SLTLK+SE+SN+  QAQN I  L  ES QLKEK+  +ERE  SL EM
Sbjct: 369 FIHNLKVTKEENDSLTLKLSEISNDMVQAQNTIDGLKGESGQLKEKLDNREREYLSLAEM 428

Query: 431 HEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQAR 490
           HE+ GN++  +IKEL+ QV GLELEL+S QA NRD+ VQI+SK A AKQL E N  L+AR
Sbjct: 429 HEMHGNKSSDRIKELEVQVRGLELELKSSQAQNRDLEVQIESKMAEAKQLREHNHGLEAR 488

Query: 491 ISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEH 550
           I +LEM++KERGDEL+    KLE N++ES SR E LT Q+N +LADL+S+  +K +LEE 
Sbjct: 489 ILELEMMSKERGDELSALTKKLEENQNES-SRTEILTVQVNTMLADLESIRAQKEELEEQ 547

Query: 551 MVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEE 610
           MV + +E S  V+GLM+QV+ L+Q+LE L  QKA L VQLE+KT EISEY+I+++ LKEE
Sbjct: 548 MVIRGNETSIHVEGLMDQVNVLEQQLEFLNSQKAELGVQLEKKTLEISEYLIQIENLKEE 607

Query: 611 IVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGL 670
           IV+KT  QQ+ L E ES TA+I  LELEV +L NQ ++L EQ+  +I+E   L EE + L
Sbjct: 608 IVSKTADQQRFLAEKESSTAQINDLELEVEALCNQNTELGEQISTEIKERELLGEEMVRL 667

Query: 671 LDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQAS 714
            + I ELEKT  ER  E SSLQE+    EN+ASAQI A+  Q S
Sbjct: 668 QEKILELEKTRAERDLEFSSLQERQTTGENEASAQIMALTEQVS 711

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072140|ref|XP_002303631.1| predicted protein [Populus trichocarpa] gi|222841063|gb|EEE78610.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 323/616 (52%), Positives = 437/616 (70%), Gaps = 14/616 (2%)

Query: 113 KNKSNKNGELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRI 172
           K K +  G +++E  +  + + +E D+  LE     R +  + + +EAL LEY++AL +I
Sbjct: 299 KQKLDAAGVIKAELNQRLEELNKEKDSLILEREAAMRSIEESEKIREALKLEYETALIKI 358

Query: 173 QEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTA-- 230
           QE  E+IRNL++EAES +T+K +L  E+  L QKLDAAG IEAELN+ + ++ ++  +  
Sbjct: 359 QEEEEVIRNLEIEAESSDTDKARLLAESGGLKQKLDAAGLIEAELNQRLEELNKEKNSLI 418

Query: 231 -------RSEE-----KEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNA 278
                  RS E     +EAL LEY+TAL KIQE EE+IRNLKLE ES +      LA N 
Sbjct: 419 LETEAAMRSIEESEKIREALTLEYETALIKIQEEEEVIRNLKLEVESSDTGKARLLAENG 478

Query: 279 ELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNE 338
           ELKQKL  AG +EAELN R+E+++++KD +I+EKE  +R +EE EKI EDLR   DQL E
Sbjct: 479 ELKQKLDSAGVIEAELNQRMEELNKEKDGMILEKEAAMRSIEESEKIGEDLRILTDQLQE 538

Query: 339 EKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQ 398
           EK   G+ELE L+ ++S M+QQLES++ +V++ + NL+ T+ EN SLTLK+SE+SNE +Q
Sbjct: 539 EKATTGQELEALKAELSIMKQQLESAEHQVAEFTHNLSVTKRENDSLTLKLSEISNEMEQ 598

Query: 399 AQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELES 458
           AQN I  L+ ES  LK+K+ ++ERE SSL EMHE  GNE+  +I  L+ QV GLELEL S
Sbjct: 599 AQNTIDGLVGESGHLKDKLGDREREYSSLAEMHETHGNESSTRINGLEVQVRGLELELGS 658

Query: 459 LQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESE 518
            QA NRD+ VQI+SK A AKQL E+N  L+ARI +LEM++K RGDEL+  + KLE N +E
Sbjct: 659 SQARNRDLEVQIESKVAEAKQLGEQNQGLEARILELEMMSKVRGDELSALMKKLEENYNE 718

Query: 519 SLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELES 578
           S SR E+LT Q++ LLAD  S+H +K++LEE MV + +EAST+V+GL++QV+ LQQ+LES
Sbjct: 719 SFSRTESLTVQVDTLLADFKSIHAQKAELEEQMVSRGNEASTRVEGLIDQVNLLQQQLES 778

Query: 579 LRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELE 638
           LR QK  LEVQLE KT EISEY I ++ LKEEIV+KTE QQ++L E ES +A+I  LELE
Sbjct: 779 LRSQKVELEVQLENKTLEISEYRILIENLKEEIVSKTEDQQRVLAEKESCSAQINDLELE 838

Query: 639 VASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINV 698
           V +L NQK+DL EQ+  + +E   L EE + L + I E+EKT TER  ELS+LQE+H N 
Sbjct: 839 VETLCNQKTDLGEQISTETKERERLGEEMVRLQEKILEMEKTQTEREFELSALQERHTNG 898

Query: 699 ENKASAQITAMAAQAS 714
           E +ASAQI A+  Q +
Sbjct: 899 EIEASAQIMALTEQVN 914

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537725|ref|XP_002509929.1| Centromeric protein E, putative [Ricinus communis] gi|223549828|gb|EEF51316.1| Centromeric protein E, putative [Ricinus communis]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 325/629 (51%), Positives = 442/629 (70%), Gaps = 40/629 (6%)

Query: 119  NGELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGEL 178
            +G  E E  +  + M +E D   +EV++LK ++T T+EEKEALNLE+Q+AL RIQEA E+
Sbjct: 746  SGNKEEELNQRLEEMSKEKDDLNVEVADLKSKLTVTTEEKEALNLEHQTALRRIQEAEEV 805

Query: 179  IRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEAL 238
            +RNLKLEAE LN EK KL+VEN EL Q L  +   EAELN+ +  M       S+EK+ L
Sbjct: 806  LRNLKLEAERLNAEKEKLSVENGELKQDLGGSAIKEAELNQRLEKM-------SQEKDDL 858

Query: 239  NLEYQTALSKIQEAEEIIRNLKLEAESLNNDM------LEGLAVN-AELKQKLSIAGELE 291
             +E +TA++KI+E  +I  +LK+ A+ L  +       LE    + A +KQ+L  + EL+
Sbjct: 859  VVENETAMTKIEEGAQIAEDLKIAADKLQEEKVALGQELERFRADIASMKQQLE-SAELQ 917

Query: 292  AE----------------------LNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDL 329
                                    LNH LE ++ +KDNL+MEKET +RR+EE EK AEDL
Sbjct: 918  VRDLSQNLTVSVEENKSLTSTISVLNHELEVLNSEKDNLLMEKETAVRRIEEVEKTAEDL 977

Query: 330  RNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKI 389
            R  AD L +EK   G++LETLR +I + +QQLES++Q+VSDL+ NL   EEEN SLT K+
Sbjct: 978  RIFADALQDEKETTGQDLETLRKEIFSTKQQLESAEQKVSDLAHNLKVAEEENLSLTSKV 1037

Query: 390  SEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQV 449
            S+  NE QQA+N IQDL  ES QLKEK+ ++ERE SSL EMHE  GN++ AQI EL+A V
Sbjct: 1038 SDTLNEIQQARNTIQDLATESGQLKEKLHDREREFSSLSEMHEAHGNKSSAQIMELEALV 1097

Query: 450  TGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTI 509
            T L+LELESLQ+ NR+M VQI+SK + AKQ+ EENL+L+ARIS+LEM++KERGDEL+T I
Sbjct: 1098 TSLQLELESLQSLNRNMKVQIESKMSEAKQVGEENLRLEARISELEMISKERGDELSTLI 1157

Query: 510  MKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQV 569
             KL  NE ES SR ++LT+QIN LLA+L+SLH EK++LEE +V K DEAS QVKGLM+QV
Sbjct: 1158 KKLGDNEKESSSRADSLTSQINSLLAELESLHTEKTELEEQIVSKGDEASIQVKGLMDQV 1217

Query: 570  DTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLT 629
            + L+++L SL  +KA LEVQL+ KT+EIS+++I+++ LKEEI   TE +Q+ L E ESLT
Sbjct: 1218 NELRRQLNSLCNEKAELEVQLQNKTQEISQFLIQIETLKEEIACNTEDRQRTLGEKESLT 1277

Query: 630  ARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELS 689
             +I  L LE+ +L +QK+DLEEQ+R +++E   + EE  GL D IF LEKT+TER  E +
Sbjct: 1278 GQINDLGLEMETLRDQKTDLEEQIRTEVKENGRMGEEMQGLRDQIFRLEKTITERRLEFA 1337

Query: 690  SLQEKHINVENKASAQITAMAAQASLPQI 718
            +LQ ++   E++ASA+I  + AQA+  Q+
Sbjct: 1338 ALQARY---EDEASAKIMTLTAQANSLQL 1363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511454|ref|XP_003524441.1| PREDICTED: uncharacterized protein LOC100812919 [Glycine max]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 330/721 (45%), Positives = 466/721 (64%), Gaps = 91/721 (12%)

Query: 1    MTKRRFRESIKSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGI----- 55
            M K RFRESIKS FGS+ID  K+EQL+  K EIEDK K+ILKL+++ +L+E DG      
Sbjct: 750  MVKHRFRESIKSLFGSHIDSNKEEQLQEAKAEIEDKVKRILKLIKEDNLEE-DGTPVEHS 808

Query: 56   -KEPLVELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYSSSSSDSDSDSDHSSKN 114
             KEPLVELIE FH+QYQSLYAQYD+L GEL+KKI GK+E +  SSSSSDSDSDSD+SSK+
Sbjct: 809  KKEPLVELIEDFHNQYQSLYAQYDHLTGELRKKIKGKRE-KGSSSSSSDSDSDSDYSSKD 867

Query: 115  KSNKNGELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQE 174
            + NKNG+LE+E+QKT   ++QEL+   +EV+EL R++T T EEKE LN +Y +ALS+IQE
Sbjct: 868  RDNKNGQLENEFQKTIHDLRQELEVVHIEVAELNRKLTITHEEKEDLNSKYLAALSKIQE 927

Query: 175  AGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEE 234
            A ++  +LK +AE+L T++LKL VENAELN++LD AGKIE EL++++ D    LTA   E
Sbjct: 928  ADKINMDLKTDAEALGTQRLKLLVENAELNKQLDTAGKIEVELSQKLED----LTA---E 980

Query: 235  KEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGE---LE 291
            K++L +E +TAL +I+E ++I   L+   + L +   E LA+  EL+   ++ GE   L+
Sbjct: 981  KDSLTMEKETALQQIEEEKKITDGLRTLVDQLKD---ENLALGKELE---AVTGEFSILK 1034

Query: 292  AELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLR 351
             +L H  + ++  + NL               K+AE+                 E E+L+
Sbjct: 1035 QQLEHAEQQMTDIRHNL---------------KVAEE-----------------ENESLK 1062

Query: 352  GKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESS 411
             K+S    ++  +   + D                                    +AESS
Sbjct: 1063 VKLSQASNEVHLAHNRIQDF-----------------------------------VAESS 1087

Query: 412  QLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQID 471
            QLKEK+ E  RE+S+L +MHE    E+  QI+EL+AQ T LE ELESLQ   RDM  QI 
Sbjct: 1088 QLKEKLDESGREISALTQMHEGYQKESSNQIRELEAQATTLEQELESLQNQKRDMEEQIK 1147

Query: 472  SKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQIN 531
            S    A +L E N  LQ +IS+LE+ ++ER +EL+  + KL+ NE+ES S++ +LT+QI+
Sbjct: 1148 SSTTEAGELGELNSGLQNQISELEIKSREREEELSAMMKKLKDNENESSSKMSDLTSQID 1207

Query: 532  DLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLE 591
             LLAD+ +LH +K++LEE ++ K DEASTQVK + N+++ L+QE+ESL+ QK  LE QL 
Sbjct: 1208 KLLADIGTLHAQKNELEEQIISKSDEASTQVKSITNELNALRQEVESLQHQKLDLEFQLV 1267

Query: 592  EKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEE 651
            EK +E SEY+I++Q LKEEI  K   Q+++LE+ E+L  ++++LELE+ ++ N+ S+ EE
Sbjct: 1268 EKVQENSEYVIQMQTLKEEIDRKILEQERLLEDKENLAMKLRTLELEMNTIKNKNSEAEE 1327

Query: 652  QMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAA 711
            Q+R K  E   L EE L L + I  LEKTL E+ SELS+LQEK    E++AS QI A  +
Sbjct: 1328 QIRAKNHENTELREEILRLQEAIAALEKTLAEKESELSTLQEKLHEKESEASGQIIAFTS 1387

Query: 712  Q 712
            Q
Sbjct: 1388 Q 1388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473905|ref|XP_002271209.2| PREDICTED: uncharacterized protein LOC100255355 [Vitis vinifera]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 255/474 (53%), Positives = 343/474 (72%)

Query: 245  ALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRD 304
            A SK  E EEII + K E E L+ +  E L  N  LKQKL  A  +EAELN RLED++R+
Sbjct: 606  AFSKNPETEEIIMHWKSEVERLDGEKTELLVENGNLKQKLDNASNVEAELNQRLEDLNRE 665

Query: 305  KDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESS 364
            ++NLIMEKET ++R+E GE+IAE+L+++ D+L +EKLVL +ELE ++G+ISN+EQ LES+
Sbjct: 666  RENLIMEKETAIKRIEVGEEIAEELKSTGDKLKDEKLVLEQELEAVKGEISNLEQLLEST 725

Query: 365  KQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREV 424
            +QE+S LS    A EEE  SL LKI E+SNEF+QA+N +Q+LMAESSQLK K+ +KE E+
Sbjct: 726  RQEMSSLSHTHRAIEEEKDSLALKILEISNEFKQAENAMQELMAESSQLKVKLGDKESEL 785

Query: 425  SSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEEN 484
            S+L++ HE   NE  A+IK L+AQVTGLELEL SL     +M   I+S A  AKQL EEN
Sbjct: 786  SNLMKKHEGHENEASARIKGLEAQVTGLELELSSLSTQRGEMEKLIESTATEAKQLAEEN 845

Query: 485  LQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEK 544
            L L+A+IS LE ++KER +EL   + K + +E+ESLS+I +LTAQIN+L  ++DSL  +K
Sbjct: 846  LGLKAQISQLETISKEREEELAGLLKKFKDDENESLSKIADLTAQINNLQLEVDSLQAQK 905

Query: 545  SKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEV 604
             +LE+ +V   +EAS QVKGL  QV  L+ ELESL   K  +E+ LE+KT E SEY+I++
Sbjct: 906  DELEKQVVQNSEEASVQVKGLTEQVTELKLELESLHSLKMEMELMLEKKTEENSEYLIQM 965

Query: 605  QILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLT 664
              LKEE+V+K   QQ+ILEE ESLT ++K LELE+ S+ N +S LEEQ+  K  E   L 
Sbjct: 966  GNLKEELVSKAADQQRILEEKESLTGKVKDLELEMDSIRNHRSTLEEQLSSKHHEYNQLR 1025

Query: 665  EEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQI 718
            EEK GL    F+LEKT+TERG ELS+LQ+K  + EN+ASA+I A+ A+ +  Q+
Sbjct: 1026 EEKEGLHVRSFDLEKTITERGDELSALQKKFEDTENEASARIVALTAEVNSLQV 1079

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742307|emb|CBI34456.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 253/473 (53%), Positives = 343/473 (72%)

Query: 245 ALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRD 304
           A SK  E EEII + K E E L+ +  E L  N  LKQKL  A  +EAELN RLED++R+
Sbjct: 126 AFSKNPETEEIIMHWKSEVERLDGEKTELLVENGNLKQKLDNASNVEAELNQRLEDLNRE 185

Query: 305 KDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESS 364
           ++NLIMEKET ++R+E GE+IAE+L+++ D+L +EKLVL +ELE ++G+ISN+EQ LES+
Sbjct: 186 RENLIMEKETAIKRIEVGEEIAEELKSTGDKLKDEKLVLEQELEAVKGEISNLEQLLEST 245

Query: 365 KQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREV 424
           +QE+S LS    A EEE  SL LKI E+SNEF+QA+N +Q+LMAESSQLK K+ +KE E+
Sbjct: 246 RQEMSSLSHTHRAIEEEKDSLALKILEISNEFKQAENAMQELMAESSQLKVKLGDKESEL 305

Query: 425 SSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEEN 484
           S+L++ HE   NE  A+IK L+AQVTGLELEL SL     +M   I+S A  AKQL EEN
Sbjct: 306 SNLMKKHEGHENEASARIKGLEAQVTGLELELSSLSTQRGEMEKLIESTATEAKQLAEEN 365

Query: 485 LQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEK 544
           L L+A+IS LE ++KER +EL   + K + +E+ESLS+I +LTAQIN+L  ++DSL  +K
Sbjct: 366 LGLKAQISQLETISKEREEELAGLLKKFKDDENESLSKIADLTAQINNLQLEMDSLQAQK 425

Query: 545 SKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEV 604
            +LEE +  + DEAS Q+K LM QV   +QELESL  QK   E+ LE++T+E S ++I++
Sbjct: 426 GELEEQLRRRGDEASDQIKDLMGQVSETKQELESLHSQKTEKELLLEKRTQENSGFLIQI 485

Query: 605 QILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLT 664
             LKEE+ NKT  QQ++LEE ESL A++K LELE+ S+ N KS+LEEQ+  K  E   L+
Sbjct: 486 GNLKEELANKTVDQQRMLEEKESLVAKVKDLELEMDSIQNHKSELEEQLSSKHHEYNKLS 545

Query: 665 EEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQ 717
           EEK GL    F+LEKTLT+RG+ELS+LQ+K  +  ++A+AQI A+  Q S  Q
Sbjct: 546 EEKEGLHVRSFDLEKTLTDRGNELSALQKKLEDGASEATAQILALTTQLSALQ 598

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464076|ref|XP_004149755.1| PREDICTED: uncharacterized protein LOC101204981 [Cucumis sativus] gi|449505043|ref|XP_004162360.1| PREDICTED: uncharacterized protein LOC101223643 [Cucumis sativus]

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 266/603 (44%), Positives = 390/603 (64%), Gaps = 35/603 (5%)

Query: 146  ELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQ 205
            ++KR++ AT+EEKE LNL++ +ALS+I EA ++I ++K ++E+   EK  L     E+NQ
Sbjct: 489  QVKRQLAATTEEKEVLNLDHATALSKITEADQIIGDMKTQSETWAVEKTDLLYMIEEMNQ 548

Query: 206  KLDAAGKIEAEL-----------------------------------NREVSDMKRQLTA 230
            ++  A KIEAEL                                   N  +  +  QLT 
Sbjct: 549  RMSDAIKIEAELRGRLKDIEIERDGLIKEKEIAWKEIEQGKQVREELNATIDQLNSQLTI 608

Query: 231  RSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGEL 290
              EEK+AL+LE+  ALSK+QEA +II + K++A+S + +  + L     L Q+L+ A +L
Sbjct: 609  TVEEKKALSLEHVMALSKLQEANKIIEDFKVDADSWDLEKSKLLLQVEGLNQRLNQASKL 668

Query: 291  EAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETL 350
            E ELN RL  +  DK NLI E+ET   R+EEGEKI +DL    D+L EEK+++ +ELETL
Sbjct: 669  ETELNERLNVVEIDKVNLIKERETAWERIEEGEKIIKDLNEIGDRLKEEKIIISQELETL 728

Query: 351  RGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAES 410
            RG++S ++QQ++S++Q+ + LS +L A+E EN+ L LKI E+S+E Q AQ   Q+L+++ 
Sbjct: 729  RGEVSILKQQIQSTEQQAAKLSHSLGASEGENRLLNLKIVEISSEIQLAQQTNQELVSQL 788

Query: 411  SQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQI 470
              LKE +  +E E S LVE HE   NE+L ++  L+AQVT LE ELE LQ+  +D+  ++
Sbjct: 789  QLLKEDLGVRETERSILVEKHETHVNESLTRVNMLEAQVTRLETELELLQSREKDLSQEL 848

Query: 471  DSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQI 530
            + K A AKQL EEN+ LQAR+S++E+L +ER +EL+    KLE +E+ S S   NLT +I
Sbjct: 849  EIKTAEAKQLGEENIGLQARVSEIEVLFRERENELSILRKKLEDSENRSSSNTANLTLEI 908

Query: 531  NDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQL 590
            N LL +++SLH++K +LEE M+ +++EAS QVKGL +QVDTLQQ+LE  + QK  LE+QL
Sbjct: 909  NRLLEEINSLHSQKGELEERMICRNEEASLQVKGLADQVDTLQQQLEVQQSQKVELELQL 968

Query: 591  EEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLE 650
            E  T+ ISEY I++Q  KEE+ +K    Q++++E E L  RIK LE    SL N+K +LE
Sbjct: 969  ERTTQTISEYTIQIQKFKEELEDKISDLQRLVKEKEDLIVRIKDLESAFDSLCNEKHELE 1028

Query: 651  EQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMA 710
            E+++ +++    L EEK  L    FELE  L+ RG EL++L EKHIN E +AS+Q   + 
Sbjct: 1029 EKLKSQMDGNSQLREEKFELEKKFFELESNLSNRGVELATLHEKHINGEAEASSQKLILV 1088

Query: 711  AQA 713
            AQ 
Sbjct: 1089 AQV 1091

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527672|ref|XP_003532432.1| PREDICTED: uncharacterized protein LOC100778046 [Glycine max]

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 233/493 (47%), Positives = 335/493 (67%), Gaps = 26/493 (5%)

Query: 220 EVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAE 279
           EV++  R+LT   EEKE LN +Y  ALSKIQEA++I  +LK +AE+L     + L  NAE
Sbjct: 147 EVAESNRKLTITHEEKEDLNSKYLAALSKIQEADKINMDLKTDAEALGTQRSKLLVENAE 206

Query: 280 LKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEE 339
           L ++L  AG+++AEL+ +LED+  +KD+L +EKET L++ EE +KI + LR   DQL +E
Sbjct: 207 LNKQLETAGKIKAELSQKLEDLMAEKDSLTIEKETALQQNEEEKKITDGLRTLVDQLKDE 266

Query: 340 KLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQA 399
           KL LGKELE + G++S ++QQLE ++Q+++D+S NL   EEEN+SL +K S+ SNE Q A
Sbjct: 267 KLALGKELEAVAGELSILKQQLEHTEQQMTDISHNLKVAEEENESLKVKHSQASNEVQLA 326

Query: 400 QNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESL 459
            N IQD +AESSQLKEK+ E  RE+S+L +MHE    E+  QI+EL+ Q+T LE ELESL
Sbjct: 327 HNRIQDFVAESSQLKEKLDESGREISALTQMHEGYQKESSNQIRELETQLTSLEQELESL 386

Query: 460 QAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESES 519
           Q   RDM  QI S    A++L E N  LQ +IS+ E+ ++ER +EL+  + KLE NE+ES
Sbjct: 387 QNQKRDMEEQIKSSTTEARELGEHNSGLQNQISEHEIKSREREEELSAMMKKLEDNENES 446

Query: 520 LSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESL 579
            S++ +LT+QIN LLAD+ +LH +K++LEE ++ K DEASTQ K + N+++ LQQE+ESL
Sbjct: 447 SSKMSDLTSQINKLLADIGTLHAQKNELEEQIISKSDEASTQFKSITNELNALQQEVESL 506

Query: 580 RGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEV 639
           + QK+ LEVQL EK +E SEY+I++Q LKEEI  K   Q+++LE+ E+L  ++++LELE+
Sbjct: 507 QHQKSDLEVQLVEKIQENSEYVIQIQTLKEEIDRKILGQERLLEDKENLAMQLRTLELEM 566

Query: 640 ASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVE 699
            ++ N+  + EEQ+R K  E                            LS+LQEK    E
Sbjct: 567 NTIKNKNIEAEEQIRAKSHE--------------------------INLSTLQEKLREKE 600

Query: 700 NKASAQITAMAAQ 712
           ++AS +I A  +Q
Sbjct: 601 SEASRKIIAFTSQ 613

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186528371|ref|NP_198994.2| COP1-interactive protein 1 [Arabidopsis thaliana] gi|332007346|gb|AED94729.1| COP1-interactive protein 1 [Arabidopsis thaliana]

 Score =  237 bits (605), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 235/755 (31%), Positives = 404/755 (53%), Gaps = 101/755 (13%)

Query: 1   MTKRRFRESIKSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKEPLV 60
           M K +FRE++KSFF  + D EK E LKG K EI++K  KIL +V+  D+ E +  ++ + 
Sbjct: 1   MKKHKFRETLKSFFEPHFDHEKGEMLKGTKTEIDEKVNKILGMVESGDVNEDESNRQVVA 60

Query: 61  ELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYSSSSSDSDSDSDHSSKNKSNKNG 120
           +L++ F+S+YQSLY QYD+L GE++KK++GK   E+ SSSSSDSDSD     K K N NG
Sbjct: 61  DLVKEFYSEYQSLYRQYDDLTGEIRKKVNGK--GESSSSSSSDSDSDHSSKRKVKRNGNG 118

Query: 121 ELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIR 180
           ++E + +  T  +KQ+++AA LE+++LK ++T T EEKEA++ E + AL +++E+ E+  
Sbjct: 119 KVEKDVELVTGALKQQIEAANLEIADLKGKLTTTVEEKEAVDSELELALMKLKESEEISS 178

Query: 181 NLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNL 240
            LKLE E L  EK     +N EL+QKL+ AGK E +LN+++ D+K+       E++ L  
Sbjct: 179 KLKLETEKLEDEKSIALSDNRELHQKLEVAGKTETDLNQKLEDIKK-------ERDELQT 231

Query: 241 EYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLED 300
           E    + + QEAE++  + K  ++ L ++        + LKQ+L  + +  +EL   +  
Sbjct: 232 ERDNGIKRFQEAEKVAEDWKTTSDQLKDE-------TSNLKQQLEASEQRVSELTSGMNS 284

Query: 301 ISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETL---------- 350
              +  +L ++   +   +++G+   ++L +   ++ E+      E  +L          
Sbjct: 285 AEEENKSLSLKVSEISDVIQQGQTTIQELISELGEMKEKYKEKESEHSSLVELHKTHERE 344

Query: 351 -RGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAE 409
              ++  +E  +ESS++ V+D +Q+L   EEE K L+ KI+E+SNE Q+AQN +Q+LM+E
Sbjct: 345 SSSQVKELEAHIESSEKLVADFTQSLNNAEEEKKLLSQKIAELSNEIQEAQNTMQELMSE 404

Query: 410 SSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQ 469
           S QLKE    KERE+ SL ++HE+   ++  +  EL+AQ       LES +    D+   
Sbjct: 405 SGQLKESHSVKERELFSLRDIHEIHQRDSSTRASELEAQ-------LESSKQQVSDL--- 454

Query: 470 IDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQ 529
               +A+ K  EEEN  + ++                           E+++++E     
Sbjct: 455 ----SASLKAAEEENKAISSK-------------------------NVETMNKLEQTQNT 485

Query: 530 INDLLADLDSL---HNEK-----SKLEEHMVFKDDEASTQVKGLMNQVDT-------LQQ 574
           I +L+A+L  L   H EK     S +E H   + D +S  VK L  QV++       L Q
Sbjct: 486 IQELMAELGKLKDSHREKESELSSLVEVHETHQRD-SSIHVKELEEQVESSKKLVAELNQ 544

Query: 575 ELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKT-------EVQQKILEEIES 627
            L +   +K V    L +K  E+S  I E Q   +E+V+++        V+ + L  +  
Sbjct: 545 TLNNAEEEKKV----LSQKIAELSNEIKEAQNTIQELVSESGQLKESHSVKDRDLFSLRD 600

Query: 628 L--------TARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEK 679
           +        + R+  LE ++ S   + SDL   ++   EE   ++ + L ++D + + + 
Sbjct: 601 IHETHQRESSTRVSELEAQLESSEQRISDLTVDLKDAEEENKAISSKNLEIMDKLEQAQN 660

Query: 680 TLTERGSELSSLQEKHINVENKASAQITAMAAQAS 714
           T+ E   EL  L+++H   E++ S+ + +   Q +
Sbjct: 661 TIKELMDELGELKDRHKEKESELSSLVKSADQQVA 695

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177363|dbj|BAB10654.1| myosin heavy chain-like protein [Arabidopsis thaliana]

 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 156/350 (44%), Positives = 240/350 (68%), Gaps = 11/350 (3%)

Query: 345 KELET-LRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLI 403
           +EL T LRG    +E QLESS+  V +LS++L A EEE+++++ KISE S+E ++ Q ++
Sbjct: 657 RELSTQLRG----LEAQLESSEHRVLELSESLKAAEEESRTMSTKISETSDELERTQIMV 712

Query: 404 QDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHN 463
           Q+L A+SS+LKE++ EKE ++  L E    + +++  QIKEL+A V  LELELES++A  
Sbjct: 713 QELTADSSKLKEQLAEKESKLFLLTE----KDSKSQVQIKELEATVATLELELESVRARI 768

Query: 464 RDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRI 523
            D+  +I SK    +QLE +N ++ ARIS+LE   +ERG EL+    KLE N+ +S S I
Sbjct: 769 IDLETEIASKTTVVEQLEAQNREMVARISELEKTMEERGTELSALTQKLEDNDKQSSSSI 828

Query: 524 ENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQK 583
           E LTA+I+ L A+LDS+  +K ++E+ MV K +EAS ++K L ++V+ L+Q++ SL  Q+
Sbjct: 829 ETLTAEIDGLRAELDSMSVQKEEVEKQMVCKSEEASVKIKRLDDEVNGLRQQVASLDSQR 888

Query: 584 AVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLG 643
           A LE+QLE+K+ EISEY+ ++  LKEEI+NK +V + ILEEI  L+ +IK  ELE+ +LG
Sbjct: 889 AELEIQLEKKSEEISEYLSQITNLKEEIINKVKVHESILEEINGLSEKIKGRELELETLG 948

Query: 644 NQKSDLEEQMRLKIEEGFHLTEEKLGLLDG-IFELEKTLTERGSELSSLQ 692
            Q+S+L+E++R K EE   +  +K+ +    I  L + +    +EL SLQ
Sbjct: 949 KQRSELDEELRTKKEENVQM-HDKINVASSEIMALTELINNLKNELDSLQ 997

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	748
TAIR|locus:2152985	1586	CIP1 "COP1-interactive protein	0.885	0.417	0.306	2.4e-81
TAIR|locus:2014240	555	AT1G64330 "AT1G64330" [Arabido	0.657	0.886	0.289	1.9e-47
SGD|S000002216	1790	USO1 "Protein involved in the	0.732	0.306	0.243	1e-29
DICTYBASE|DDB_G0290503	1492	DDB_G0290503 [Dictyostelium di	0.893	0.447	0.198	2.8e-29
TAIR|locus:2130210	1710	NET1B "Networked 1B" [Arabidop	0.737	0.322	0.238	3.1e-27
UNIPROTKB|F1N775	1937	MYH8 "Uncharacterized protein"	0.732	0.282	0.247	3.6e-27
TAIR|locus:2007569	1733	NET1D "AT1G03080" [Arabidopsis	0.735	0.317	0.240	4.3e-27
UNIPROTKB|E1BP87	1939	MYH4 "Uncharacterized protein"	0.733	0.283	0.244	3.5e-26
UNIPROTKB|Q076A5	1939	MYH4 "Myosin-4" [Canis lupus f	0.740	0.285	0.245	3.5e-26
MGI|MGI:1339712	1937	Myh8 "myosin, heavy polypeptid	0.739	0.285	0.248	9.4e-26

TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 827 (296.2 bits), Expect = 2.4e-81, P = 2.4e-81
 Identities = 219/715 (30%), Positives = 388/715 (54%)

Query:     1 MTKRRFRESIKSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKEPLV 60
             M K +FRE++KSFF  + D EK E LKG K EI++K  KIL +V+  D+ E +  ++ + 
Sbjct:     1 MKKHKFRETLKSFFEPHFDHEKGEMLKGTKTEIDEKVNKILGMVESGDVNEDESNRQVVA 60

Query:    61 ELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYXXXXXXXXXXXXXXXXXXXXXXG 120
             +L++ F+S+YQSLY QYD+L GE++KK++GK E+ +                       G
Sbjct:    61 DLVKEFYSEYQSLYRQYDDLTGEIRKKVNGKGESSS--SSSSDSDSDHSSKRKVKRNGNG 118

Query:   121 ELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIR 180
             ++E + +  T  +KQ+++AA LE+++LK ++T T EEKEA++ E + AL +++E+ E+  
Sbjct:   119 KVEKDVELVTGALKQQIEAANLEIADLKGKLTTTVEEKEAVDSELELALMKLKESEEISS 178

Query:   181 NLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNL 240
              LKLE E L  EK     +N EL+QKL+ AGK E +LN+++ D+K+       E++ L  
Sbjct:   179 KLKLETEKLEDEKSIALSDNRELHQKLEVAGKTETDLNQKLEDIKK-------ERDELQT 231

Query:   241 EYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLED 300
             E    + + QEAE++  + K  ++ L ++        + LKQ+L  + +  +EL   +  
Sbjct:   232 ERDNGIKRFQEAEKVAEDWKTTSDQLKDE-------TSNLKQQLEASEQRVSELTSGMNS 284

Query:   301 ISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNE---EK------LV-LGKELET- 349
                +  +L ++   +   +++G+   ++L +   ++ E   EK      LV L K  E  
Sbjct:   285 AEEENKSLSLKVSEISDVIQQGQTTIQELISELGEMKEKYKEKESEHSSLVELHKTHERE 344

Query:   350 LRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAE 409
                ++  +E  +ESS++ V+D +Q+L   EEE K L+ KI+E+SNE Q+AQN +Q+LM+E
Sbjct:   345 SSSQVKELEAHIESSEKLVADFTQSLNNAEEEKKLLSQKIAELSNEIQEAQNTMQELMSE 404

Query:   410 SSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQ 469
             S QLKE    KERE+ SL ++HE+   ++  +  EL+AQ+   + ++  L A  +    +
Sbjct:   405 SGQLKESHSVKERELFSLRDIHEIHQRDSSTRASELEAQLESSKQQVSDLSASLK--AAE 462

Query:   470 IDSKAAAAKQLEEENL---------QLQARISDLEMLTKERGDELTTTIMKLEANESESL 520
              ++KA ++K +E  N          +L A +  L+   +E+  EL++ +   E ++ +S 
Sbjct:   463 EENKAISSKNVETMNKLEQTQNTIQELMAELGKLKDSHREKESELSSLVEVHETHQRDSS 522

Query:   521 SRIENLTAQIND---LLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELE 577
               ++ L  Q+     L+A+L+   N   + ++ +  K  E S ++K   N +  L  E  
Sbjct:   523 IHVKELEEQVESSKKLVAELNQTLNNAEEEKKVLSQKIAELSNEIKEAQNTIQELVSESG 582

Query:   578 SLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEE-IESLTARIKSLE 636
              L+   +V +  L    R+I E     Q      V++ E Q +  E+ I  LT  +K  E
Sbjct:   583 QLKESHSVKDRDLFS-LRDIHE---THQRESSTRVSELEAQLESSEQRISDLTVDLKDAE 638

Query:   637 LEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSL 691
              E  ++ ++  ++ +    K+E+  +  +E   L+D + EL+    E+ SELSSL
Sbjct:   639 EENKAISSKNLEIMD----KLEQAQNTIKE---LMDELGELKDRHKEKESELSSL 686

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

TAIR|locus:2014240 AT1G64330 "AT1G64330" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.9e-47, P = 1.9e-47
 Identities = 160/553 (28%), Positives = 282/553 (50%)

Query:     1 MTKRRFRESIKSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKEPLV 60
             M K   R+S+KSFF  ++ P+  E LKG K EI++K KKIL +V+  D++E +  +  + 
Sbjct:     1 MRKLSIRDSLKSFFEPHLHPDNGESLKGTKTEIDEKVKKILGIVESGDIEEDESKRLVVA 60

Query:    61 ELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYXXXXXXXXXXXXXXXXXXXXXXG 120
             EL++ F+ +Y+SLY QYD+L GE++KK+HGK EN++                       G
Sbjct:    61 ELVKDFYKEYESLYHQYDDLTGEIRKKVHGKGENDS----SSSSSSDSDSDKKSKRNGRG 116

Query:   121 ELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIR 180
             E E E       +K++++ A LE+++LK ++  T E KEA+  E+Q  L +++E+ E+  
Sbjct:   117 ENEIEL------LKKQMEDANLEIADLKMKLATTDEHKEAVESEHQEILKKLKESDEICG 170

Query:   181 NLKLEAESLNTE------KLKLTVEN-AELNQKLDAAGK----IEAELNREVSDMK---- 225
             NL++E E L +E      KL++  E  ++LNQKL+   K    +EAEL  +  D +    
Sbjct:   171 NLRVETEKLTSENKELNEKLEVAGETESDLNQKLEDVKKERDGLEAELASKAKDHESTLE 230

Query:   226 --RQLTARSEEKEA-LNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQ 282
                +L  +  E EA L  E Q   + + +  ++ + L LE E+  N + +      E KQ
Sbjct:   231 EVNRLQGQKNETEAELEREKQEKPALLNQINDVQKAL-LEQEAAYNTLSQ------EHKQ 283

Query:   283 KLSIAGELEAELNHRLEDISRDKDNL--IMEK--ETVLRRVEEGEKIAE------DLRNS 332
                +  E EA +    +D  + ++ L   M K  ET  R  E G+ +A       DL  +
Sbjct:   284 INGLFEEREATIKKLTDDYKQAREMLEEYMSKMEETERRMQETGKDVASRESAIVDLEET 343

Query:   333 ADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEM 392
              + L  E    G E+E+L  K+SN+E +L  S Q++    Q LT  E E K +  K  E 
Sbjct:   344 VESLRNEVERKGDEIESLMEKMSNIEVKLRLSNQKLRVTEQVLTEKEGELKRIEAKHLE- 402

Query:   393 SNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQ-IKELQAQVTG 451
                 +QA  L+++ +A + +    ++   +E+S  V+   +   ++L++ ++E       
Sbjct:   403 ----EQA--LLEEKIATTHETYRGLI---KEISERVDSTILNRFQSLSEKLEEKHKSYEK 453

Query:   452 LELELESLQAHNRDMVVQIDS-KAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIM 510
               +E   +    +  VV++   K   AK+ EE   +L+ ++ + E   KE+ ++L  T++
Sbjct:   454 TVVEATKMLLTAKKCVVEMKKEKDEMAKEKEEVEKKLEGQVREEE---KEK-EKLKETLL 509

Query:   511 KLEANESESLSRI 523
              L   + E++ ++
Sbjct:   510 GLGEEKREAIRQL 522

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

SGD|S000002216 USO1 "Protein involved in the ER to Golgi transport step of secretion" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 366 (133.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 145/596 (24%), Positives = 288/596 (48%)

Query:   126 YQKTTDGMKQELDAATLEVS-------ELKRRMTATSEEKEALNLEYQSALSRIQEAGEL 178
             +QK T  +K+++ A   E+        E+K +    S+EKE ++ E     SR Q    L
Sbjct:   897 HQKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNL 956

Query:   179 IRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEAL 238
             +  L  + +SL      +  EN  L + ++ + K E+ +  ++S+++ ++ + S+EKE  
Sbjct:   957 VAKLTEKLKSLANNYKDMQAENESLIKAVEES-KNESSI--QLSNLQNKIDSMSQEKENF 1013

Query:   239 NLEYQTALSKIQEAEEIIRNLKLEAESL--NNDML--EGLAVNAELKQKLSIAGELEAEL 294
              +E  +    I++ ++ I +L+   E +   +D    E  +  + LK+KL  A     E 
Sbjct:  1014 QIERGSIEKNIEQLKKTISDLEQTKEEIISKSDSSKDEYESQISLLKEKLETATTANDEN 1073

Query:   295 NHRLEDISRDKDNLIME-------KETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKEL 347
              +++ ++++ ++ L  E       K  +  ++E  EK  ++++ + + L EEK+ L KE 
Sbjct:  1074 VNKISELTKTREELEAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEA 1133

Query:   348 ETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLM 407
                + +++++   LES ++E  DL+  L   EE+   +  K  + + E  Q  + I    
Sbjct:  1134 TETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQ---IANKERQYNEEISQLNDEITSTQ 1190

Query:   408 AESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMV 467
              E+  +K+K  E E EV ++    E + N   ++I  L  Q+  L+ + E+ +A   + +
Sbjct:  1191 QENESIKKKNDELEGEVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESI 1250

Query:   468 VQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLT 527
               ++S+    K+L++E    +  +S+LE   K   D+  +  ++L+  ESE +   E L 
Sbjct:  1251 KSVESETVKIKELQDECNFKEKEVSELEDKLKASEDK-NSKYLELQ-KESEKIK--EELD 1306

Query:   528 AQINDLLADLDSLHN---EKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKA 584
             A+  +L   L+ + N    K K E  +      +S + K    Q++ L+ E++ ++ Q  
Sbjct:  1307 AKTTELKIQLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEIQ-IKNQAF 1365

Query:   585 VLEVQL-EEKTREIS-EYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASL 642
               E +L  E +  I+ EY  ++  L++E++      +   +EI++  +     ELE  SL
Sbjct:  1366 EKERKLLNEGSSTITQEYSEKINTLEDELIRLQNENELKAKEIDNTRS-----ELEKVSL 1420

Query:   643 GNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFEL-EKTLT-ERGS--ELSSLQEK 694
              N +   E+Q  +K      L +E L   D I    EK L+ ER +  +L SL+E+
Sbjct:  1421 SNDELLEEKQNTIK-----SLQDEILSYKDKITRNDEKLLSIERDNKRDLESLKEQ 1471

GO:0015031 "protein transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA;IDA

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IDA

GO:0048211 "Golgi vesicle docking" evidence=IDA

GO:0035493 "SNARE complex assembly" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]

 Score = 361 (132.1 bits), Expect = 2.8e-29, P = 2.8e-29
 Identities = 142/714 (19%), Positives = 329/714 (46%)

Query:     4 RRFRESIKSFFGSYIDPEKDEQLKGNKIE-IEDKFKKILKLVQDK--DLQEKDGIKEPLV 60
             + F++S++    S +D E D+     K++ + ++ + +  +V DK  ++Q KD     L 
Sbjct:   312 KSFQQSLQQ---SQLDLENDKNQFSTKLQLVNNEIQSLKSIVDDKLKEIQLKDNQLTQLN 368

Query:    61 ELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYXXXXXXXXXXXXXXXXXXXXXXG 120
             +  E  +++   +  + ++   ++  +++ +K+N+                         
Sbjct:   369 QQHEIDNNKNNQMILELNDNISKISNQLN-EKDNKIQELSKQSIDKQKEIENSTSSSD-- 425

Query:   121 ELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIR 180
             +L+ +    ++ + ++L+      ++L+ +     E    LN +    +S+  +  +LI 
Sbjct:   426 QLQLKLNDISNELLEKLNDINQLSNKLQDKENQILEINNKLNEKENQLISKDNQLNQLIE 485

Query:   181 NLKLEAESLNTEKLKLTVENAELNQKL----DAAGKIEAELNREVSDMKRQLTARSEEKE 236
             N +  ++ L  +  +L+ E  E ++KL        ++++ LN   + +   +       +
Sbjct:   486 NNESSSDELKLKLNQLSDELQEKDEKLLNNQSVINELQSNLNENQNKINELIENNQSSSD 545

Query:   237 ALNLEYQTALSKIQEAEEIIRNLK---LEAESLNNDMLEGL-----AVNAELKQKLSIAG 288
              L L+      K+QE +E +++L+   +E +   + + + L      +N  ++   S + 
Sbjct:   546 ELKLKLNQLSDKLQEKDEKLKSLESSIIERDEKIDQLQDNLNEKQDKINELVENNESSSD 605

Query:   289 ELEAELNHRLEDISRDKDNLIMEKETVLRRV-----EEGEKIAEDLRNSADQLNEEKLVL 343
             EL+++L  +L D  ++KD  ++  ++++  +     E   KI E + N+    +E    L
Sbjct:   606 ELQSKLI-QLSDQLQEKDEKLLNNQSIINELQSNLNENQNKINELIENNQSSSDELNSKL 664

Query:   344 GKELETLRGKISNMEQQLESSKQEVSD-LSQNLTATEEENKSLTLKISEMSNEFQQAQNL 402
              K  + L+ K  N+ + LE+S  E  D L Q + + +     L  K++E      Q   L
Sbjct:   665 IKLSDELKDKNENV-RSLETSIIENQDKLDQLIQSNQVTVNELQSKLNEKEININQ---L 720

Query:   403 IQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAH 462
             I++  +   +L+ K+ EK+ E++ L+E ++   +E  +++ E   +++ L+ +L  L  +
Sbjct:   721 IENNQSSLDELQSKLNEKQNEINQLIENNQSSSDELQSKLNEKHQEISELQSKLNELIEN 780

Query:   463 NRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSR 522
             N     ++ SK     QL +E  +   ++  L+ +  E  ++L       + +  E  S+
Sbjct:   781 NESSSDELQSKLI---QLSDELKEKDEKLKSLDSIIIENQEKLVQLTKSNQDSLDELQSK 837

Query:   523 IENLTAQINDLLADLDSLHNE-KSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRG 581
             +     +IN+L+ +  S  NE +SKL E    K +E +  ++   +  D LQ +L     
Sbjct:   838 LNEKQNEINELIENNQSSSNELQSKLNE----KQNEINLLIENNQSSSDELQSKLNEKHQ 893

Query:   582 QKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVAS 641
             +   L+ +L EK  +I+E +   +   +E+ +K  +Q  + ++++    ++KS E  +  
Sbjct:   894 EINELQSKLNEKQNKINELVENNESSSDELQSKL-IQ--LSDQLQEKENQLKSFESSIIE 950

Query:   642 LGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKH 695
                + + L+ ++  K  E   +TE     LD   EL+  L E+ +E++ L E +
Sbjct:   951 RDEKLNQLQSKLNEKQNEIDQITENNQSSLD---ELQSNLNEKQNEINQLIENN 1001

GO:0005543 "phospholipid binding" evidence=IEA

TAIR|locus:2130210 NET1B "Networked 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.1e-27, P = 3.1e-27
 Identities = 141/591 (23%), Positives = 269/591 (45%)

Query:   121 ELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIR 180
             +L  E  +    + +  D  T+E+    + M      + + ++   SA S  +   E   
Sbjct:    69 KLVEELYRAYRALAERYDHTTVELRRAHKVMVEAFPNQMSFDMIEDSASSSSEPRTEA-- 126

Query:   181 NLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNL 240
                 + E+L  +  K     +++N KLD       E + EV  +KR L     EKEALNL
Sbjct:   127 ----DTEALQKDGTKSKRSFSQMN-KLDGTSDSH-EADSEVETLKRTLLELQTEKEALNL 180

Query:   241 EYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELK-QKLSIAGELEAELNHRLE 299
             +YQ  LSK+   E+ + + + + +  +         + E+K  K S+A +LE E +  L 
Sbjct:   181 QYQLILSKVSRFEKELNDAQKDVKGFDE---RACKADIEIKILKESLA-KLEVERDTGLL 236

Query:   300 DISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKIS---- 355
               S+  +  I + E     +  G++ A+ L N   +   E + L KEL  L+ +      
Sbjct:   237 QYSQAIER-IADLEA---SISHGQEYAKGLTNRVSEAEREAMSLKKELSRLQSEKEAGLL 292

Query:   356 --NMEQQLESSKQE-VSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQ 412
               N   +L SS ++ + D  +++    ++++    +I  +  E  +   + +DL     Q
Sbjct:   293 RYNKSLELISSLEKTIRDAEESVRVFRDQSEQAETEIKALKQELLKLNEVNEDLNVRYQQ 352

Query:   413 LKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDS 472
               E + + EREVS   +  +   +E LA      A++  +E +   L++ N+ M V+ ++
Sbjct:   353 CLETISKLEREVSHAQDNAKRLSSEVLAGA----AKIKTVEEQCALLESFNQTMKVEAEN 408

Query:   473 KAAAAKQLEEENLQLQARISDLEMLTKE---RGDELTTTIMKLEANESESLSRIENLTAQ 529
              A      ++E  Q Q  I  L+ + +E   R  EL  ++  LE+  S+S    + LT++
Sbjct:   409 LAHKMSAKDQELSQKQNEIEKLQAVMQEEQLRFSELGASLRNLESLHSQSQEEQKVLTSE 468

Query:   530 INDLLADLDSLHNEKSKLEEHMVFKDDEAS-TQVKGLMNQVDTLQQELESLRGQKAVLEV 588
             ++  +  L  L    SKLE  +  K++  + +++      ++  + E+  L+  K  LE 
Sbjct:   469 LHSRIQMLRELEMRNSKLEGDISSKEENRNLSEINDTSISLEIQKNEISCLKKMKEKLEE 528

Query:   589 QLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTA-RIKSLELEVASLGNQKS 647
             ++ ++  + S   +E+  +K  I +     QK+++++ SLT    +SL   V  L ++ S
Sbjct:   529 EVAKQMNQSSALQVEIHCVKGNIDSMNRRYQKLIDQV-SLTGFDPESLSYSVKKLQDENS 587

Query:   648 DLEEQMRLKIEEGFHLTEEKLGLLDGIF----ELEKTLTERGSELSSLQEK 694
              L E    + +E   +T  KL  +D I     +LEK L E  ++L   +EK
Sbjct:   588 KLVELCTNQRDENNAVTG-KLCEMDSILKRNADLEKLLLESNTKLDGSREK 637

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1N775 MYH8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 343 (125.8 bits), Expect = 3.6e-27, P = 3.6e-27
 Identities = 148/599 (24%), Positives = 277/599 (46%)

Query:   122 LESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGE---- 177
             ++ E+QKT D    EL  +  +  EL+ +M    +EK  L L+ QS    + +A E    
Sbjct:   855 MKEEFQKTKD----ELAKSEAKRKELEEKMVTLLKEKNDLQLQVQSEADALADAEERCEQ 910

Query:   178 LIRNLKLEAESLNTEKLKLTVENAELNQKLDAAG-KIE---AELNREVSDMKRQLTARSE 233
             LI+N K++ E+   E  +   +  E+N +L A   K+E   AEL +++ D++  L    +
Sbjct:   911 LIKN-KIQLEAKIKEVTERAEDEEEMNAELTAKKRKLEDECAELKKDIDDLELTLAKVEK 969

Query:   234 EKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLA-VNAELKQKLSIAGELEA 292
             EK A   + +    ++   +E+I  L  E ++L     + L  + AE + K++   + +A
Sbjct:   970 EKHATENKVKNLTEEMAGLDEVIAKLTKEKKALQEAHQQTLDDLQAE-EDKVNTLNKAKA 1028

Query:   293 ELNHRLEDIS---RDKDNLIMEKETVLRRVEEGEKIAE----DLRNSADQLNEEKLVLGK 345
             +L  +++D+      +  L M+ E   R++E   K+A+    D+ N   QL+E+      
Sbjct:  1029 KLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESMVDIENDKQQLDEKLKKKEF 1088

Query:   346 ELETLRGKISNMEQQLESSKQE-VSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQ 404
             E+  L  KI + EQ +E   Q+ + +L   +   EEE ++      E ++   +A+ L  
Sbjct:  1089 EISNLLSKIED-EQAVEIQLQKKIKELQARIEELEEEIEA------ERASR-AKAEKLRS 1140

Query:   405 DLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNR 464
             DL  E  ++ E++ E     S+ +EM++ R  E     ++L+      E    +L+  + 
Sbjct:  1141 DLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAAALRKKHA 1200

Query:   465 DMVV----QIDSKAAAAKQLEEENLQLQARISDL----EMLTKERGDELTTTIMKLEANE 516
             D V     QID+     ++LE+E  +++  I DL    E + K +G+ L      LE   
Sbjct:  1201 DSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLSSNAETVAKAKGN-LEKMCRTLEDQV 1259

Query:   517 SESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD---DEASTQVKGLMNQVDTLQ 573
             SE  ++ E     INDL A    L  E  +    +  KD    + S   +    Q++ L+
Sbjct:  1260 SELKTKEEEQQRLINDLTAQRARLQTEAGEYSRQLDEKDALVSQLSRTKQASTQQIEELK 1319

Query:   574 QELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIK 633
             ++LE     K  L   L+    +    ++  Q  +EE   K E+Q + L +  S  A+ +
Sbjct:  1320 RQLEEETKAKNALAHALQSSRHDCD--LLREQY-EEEQEGKAELQ-RALSKANSEVAQWR 1375

Query:   634 SLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDG-IFELEKTLTERGSELSSL 691
             + + E  ++  Q+++  E+ + K+ +     EE +  ++     LEKT     +E+  L
Sbjct:  1376 T-KYETDAI--QRTEELEEAKKKLAQRLQDAEEHVEAVNAKCASLEKTKQRLQNEVEDL 1431

GO:0016459 "myosin complex" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

TAIR|locus:2007569 NET1D "AT1G03080" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
 Identities = 145/604 (24%), Positives = 277/604 (45%)

Query:   124 SEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLK 183
             S+ Q   +    + D    ++S L+  ++   E+   L      A + ++   E +  ++
Sbjct:   223 SKVQAEKEASLAQFDQNLEKLSNLESEVSRAQEDSRVLIERATRAEAEVETLRESLSKVE 282

Query:   184 LEAESLNTEKLKLTVENAELNQKLDAA----GKIEAELNR---EVSDMKRQLTARSEEKE 236
             +E ES   +  +     A+L  ++  A    G+++   NR   E   +K+ L +   +KE
Sbjct:   283 VEKESSLLQYQQCLQNIADLEDRISLAQKEAGEVDERANRAEAETLALKQSLVSSETDKE 342

Query:   237 ALNLEYQTALSKIQEAEEIIRNLKLEAES-LNNDMLEGLAVNAE-LKQKLS-IAGELEA- 292
             A  ++YQ  L  I   EE +   K E +S L N   E      E LKQK+S +  E EA 
Sbjct:   343 AALVQYQQCLKTISNLEERLH--KAEEDSRLTNQRAENAEGEVESLKQKVSKLIEENEAY 400

Query:   293 ELNHR--LEDISRDKDNLI-MEKET--VLRRVEEGE---KIAEDLRNSADQLNEEKLVLG 344
             EL ++  L+ I+  K  L   ++ET  + R +E+G    K AE+     ++ N+    L 
Sbjct:   401 ELQYQQCLDTIADLKLKLFHAQEETQRLSREIEDGVAKLKFAEEKCVVLERSNQN---LH 457

Query:   345 KELETLRGKISNMEQQLESSKQEVSDL-----SQNLTATEEENKSLTLK---------IS 390
              EL+ L  K+ N   +L   ++E+  L      +NL   E E    TL+         +S
Sbjct:   458 SELDGLLEKLGNQSHELTEKQKELGRLWTCVQEENLRFMEAETAFQTLQQLHSQSQEELS 517

Query:   391 EMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVT 450
              ++ E Q    +++D+ A ++ L+E++ E + +  SL E++      + A IK LQ +V+
Sbjct:   518 TLALELQNRSQILKDMEARNNGLQEEVQEAKDQSKSLNELNL----SSAASIKSLQEEVS 573

Query:   451 GLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIM 510
              L   ++ L+A   ++ +++D + A    L++E   L+  +S +    +   +++    +
Sbjct:   574 KLRETIQKLEA---EVELRVDQRNA----LQQEIYCLKEELSQIGKKHQSMVEQVELVGL 626

Query:   511 KLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVD 570
               E+  S S+  ++   +++ ++  + +S+  EK+ L E +   +      +  L N + 
Sbjct:   627 HPESFGS-SVKELQEENSKLKEI-RERESI--EKTALIEKLEMMEKLVQKNLL-LENSIS 681

Query:   571 TLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTA 630
              L  ELE++RG+   LE        E S    E  +L   + + TE  +K+ EE   L  
Sbjct:   682 DLNAELETIRGKLKTLEEASMSLAEEKSGLHSEKDMLISRLQSATENSKKLSEENMVLEN 741

Query:   631 RIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSS 690
              + +  +E+  L ++   LEE   L  ++   LT E+  LL  I  + K + +   E + 
Sbjct:   742 SLFNANVELEELKSKLKSLEESCHLLNDDKTTLTSERESLLSHIDTMRKRIEDLEKEHAE 801

Query:   691 LQEK 694
             L+ K
Sbjct:   802 LKVK 805

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

UNIPROTKB|E1BP87 MYH4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 3.5e-26, P = 3.5e-26
 Identities = 146/598 (24%), Positives = 276/598 (46%)

Query:   122 LESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRN 181
             ++ E++KT    K+EL  +  +  EL+ +M    +EK  L L+ QS    + +A E    
Sbjct:   856 MKEEFEKT----KEELAKSEAKRKELEEKMVTLMQEKNDLQLQVQSEADGLADAEERCDQ 911

Query:   182 L---KLEAESLNTEKLKLTVENAELNQKLDAAG-KIE---AELNREVSDMKRQLTARSEE 234
             L   K++ E+   E  +   +  E+N +L A   K+E   +EL +++ D++  L    +E
Sbjct:   912 LIKTKIQLEAKIKELTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKE 971

Query:   235 KEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLA-VNAELKQKLSIAGELEAE 293
             K A   + +    ++   +E I  L  E ++L     + L  + AE + K++   + + +
Sbjct:   972 KHATENKVKNLTEEMAGLDENIAKLTKEKKALQEAHQQTLDDLQAE-EDKVNTLTKSKTK 1030

Query:   294 LNHRLEDIS---RDKDNLIMEKETVLRRVEEGEKIAE----DLRNSADQLNEEKLVLGKE 346
             L  ++ED+      +  L M+ E   R++E   K+A+    D+ N   QL+E+      E
Sbjct:  1031 LEQQVEDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFE 1090

Query:   347 LETLRGKISNMEQQLESSKQE-VSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQD 405
             +  L+ KI + EQ L    Q+ + +L   +   EEE ++   + S    E Q++     D
Sbjct:  1091 MSNLQSKIED-EQALAMQLQKKIKELQARIEELEEEIEAE--RASRAKAEKQRS-----D 1142

Query:   406 LMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRD 465
             L  E  ++ E++ E     S+ +EM++ R  E     ++L+      E    +L+  + D
Sbjct:  1143 LSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAAALRKKHAD 1202

Query:   466 MVV----QIDSKAAAAKQLEEENLQLQARISDL----EMLTKERGDELTTTIMKLEANES 517
              V     QID+     ++LE+E  +++  I DL    E ++K +G+ L      LE   S
Sbjct:  1203 SVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGN-LEKMCRTLEDQLS 1261

Query:   518 ESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKG---LMNQVDTLQQ 574
             E  S+ E     IN+L A    LH E  +    +  KD   S   +G      Q++ L++
Sbjct:  1262 EVKSKEEEHQRLINELSAQKAHLHTESGEFSRQLEEKDALVSQLSRGKQAFTQQIEELKR 1321

Query:   575 ELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKS 634
             +LE     K+ L   L+    +    ++  Q  +EE   K E+Q + L +  S  A+ ++
Sbjct:  1322 QLEEETKAKSALAHALQSARHDCD--LLRQQY-EEEQEGKAELQ-RALSKANSEVAQWRT 1377

Query:   635 LELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDG-IFELEKTLTERGSELSSL 691
              + E  ++  Q+++  E+ + K+ +     EE + +++     LEKT     +E+  L
Sbjct:  1378 -KYETDAI--QRTEELEEAKKKLAQRLQDAEEHVEVVNAKCASLEKTKQRLQNEVEDL 1432

GO:0030016 "myofibril" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|Q076A5 MYH4 "Myosin-4" [Canis lupus familiaris (taxid:9615)]

 Score = 334 (122.6 bits), Expect = 3.5e-26, P = 3.5e-26
 Identities = 149/606 (24%), Positives = 280/606 (46%)

Query:   122 LESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRN 181
             ++ E++KT    K+EL  +  +  EL+ +M A  +EK  L L+ QS    + +A E    
Sbjct:   856 MKEEFEKT----KEELAKSEAKRKELEEKMVALMQEKNDLQLQVQSEADGLADAEERCDQ 911

Query:   182 L---KLEAESLNTEKLKLTVENAELNQKLDAAG-KIE---AELNREVSDMKRQLTARSEE 234
             L   K++ E+   E  +   +  E+N +L A   K+E   +EL +++ D++  L    +E
Sbjct:   912 LIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKE 971

Query:   235 KEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLA-VNAELKQKLSIAGELEAE 293
             K A   + +    ++   +E I  L  E ++L     + L  + AE + K++   + + +
Sbjct:   972 KHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAE-EDKVNTLTKAKTK 1030

Query:   294 LNHRLEDIS---RDKDNLIMEKETVLRRVEEGEKIAE----DLRNSADQLNEEKLVLGKE 346
             L  +++D+      +  L M+ E   R++E   K+A+    D+ N   QL+E+      E
Sbjct:  1031 LEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMDVENDKQQLDEKLKKKEFE 1090

Query:   347 LETLRGKISNMEQQLESSKQE-VSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQD 405
             +  L+ KI + EQ L    Q+ + +L   +   EEE ++   + S    E Q++     D
Sbjct:  1091 MSNLQSKIED-EQALAMQLQKKIKELQARIEELEEEIEAE--RASRAKAEKQRS-----D 1142

Query:   406 LMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRD 465
             L  E  ++ E++ E     S+ +EM++ R  E     ++L+      E    +L+  + D
Sbjct:  1143 LSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATLRKKHAD 1202

Query:   466 MVV----QIDSKAAAAKQLEEENLQLQARISDL----EMLTKERGDELTTTIMKLEANES 517
              V     QID+     ++LE+E  +L+  I DL    E ++K +G+ L  T   LE   S
Sbjct:  1203 SVAELGEQIDNLQRVKQKLEKEKSELKMEIDDLASNMETVSKAKGN-LEKTCRTLEDQLS 1261

Query:   518 ESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKG---LMNQVDTLQQ 574
             E  ++ E     IN+L A    LH E  +    +  K+   S   +G      Q++ L++
Sbjct:  1262 EVKTKEEEQQRLINELSAQKARLHTESGEFSRQLDEKEALVSQLSRGKQAFTQQIEELKR 1321

Query:   575 ELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKS 634
             +LE     K  L   L+    +    ++  Q  +EE   K E+Q+  + +  S  A+ ++
Sbjct:  1322 QLEEESKAKNALAHALQSARHDCD--LLREQY-EEEQEAKAELQRS-MSKANSEVAQWRT 1377

Query:   635 LELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDG-IFELEKTLTERGSELSSLQE 693
              + E  ++  Q+++  E+ + K+ +     EE +  ++     LEKT     SE+  L  
Sbjct:  1378 -KYETDAI--QRTEELEEAKKKLAQRLQEAEEHVEAVNSKCSSLEKTKQRLQSEVEDLM- 1433

Query:   694 KHINVE 699
               I+VE
Sbjct:  1434 --IDVE 1437

GO:0030016 "myofibril" evidence=IEA

GO:0014823 "response to activity" evidence=IEA

GO:0006936 "muscle contraction" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0032982 "myosin filament" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

MGI|MGI:1339712 Myh8 "myosin, heavy polypeptide 8, skeletal muscle, perinatal" [Mus musculus (taxid:10090)]

 Score = 330 (121.2 bits), Expect = 9.4e-26, P = 9.4e-26
 Identities = 151/607 (24%), Positives = 278/607 (45%)

Query:   122 LESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGE---- 177
             ++ E+QKT D    EL  +  +  EL+ +M    +EK  L L+ QS    + +A E    
Sbjct:   855 MKEEFQKTKD----ELAKSEAKRKELEEKMVTLLKEKNDLQLQVQSEADSLADAEERCEQ 910

Query:   178 LIRNLKLEAESLNTEKLKLTVENAELNQKLDAAG-KIE---AELNREVSDMKRQLTARSE 233
             LI+N K++ E+   E  +   +  E+N +L A   K+E   +EL +++ D++  L    +
Sbjct:   911 LIKN-KIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEK 969

Query:   234 EKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLA-VNAELKQKLSIAGELEA 292
             EK A   + +    ++   +E I  L  E ++L     + L  + AE + K++   + + 
Sbjct:   970 EKHATENKVKNLTEEMAGLDENIAKLTKEKKALQEAHQQTLDDLQAE-EDKVNTLTKAKT 1028

Query:   293 ELNHRLEDIS---RDKDNLIMEKETVLRRVEEGEKIAE----DLRNSADQLNEEKLVLGK 345
             +L  +++D+      +  L M+ E   R++E   K+A+    D+ N   QL+E+      
Sbjct:  1029 KLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEF 1088

Query:   346 ELETLRGKISNMEQQLESSKQE-VSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQ 404
             E+  L  KI + EQ +E   Q+ + +L   +   EEE ++   + S    E Q++     
Sbjct:  1089 EISNLISKIED-EQAVEIQLQKKIKELQARIEELEEEIEAE--RASRAKAEKQRS----- 1140

Query:   405 DLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNR 464
             DL  E  ++ E++ E     S+ VEM++ R  E     ++L+      E    +L+  + 
Sbjct:  1141 DLSRELEEISERLEEAGGATSAQVEMNKKRETEFQKLRRDLEEATLQHEATAAALRKKHA 1200

Query:   465 DMVV----QIDSKAAAAKQLEEENLQLQARISDL----EMLTKERGDELTTTIMKLEANE 516
             D V     QID+     ++LE+E  +L+  I DL    E + K +G+ L      LE   
Sbjct:  1201 DSVAELGEQIDNLQRVKQKLEKEKSELKMEIDDLSSNAEAIAKAKGN-LEKMCRTLEDQV 1259

Query:   517 SESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD---DEASTQVKGLMNQVDTLQ 573
             SE  S+ E     IN+L A    L  E  +    +  KD    + S   +    Q++ L+
Sbjct:  1260 SELKSKEEEQQRLINELTAQRARLQTEAGEYSRQLDEKDALVSQLSRSKQASTQQIEELK 1319

Query:   574 QELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIK 633
             ++LE     K  L   L+    +    ++  Q  +EE   K E+Q + L +  S  A+ +
Sbjct:  1320 RQLEEETKAKNALAHALQSSRHDCD--LLREQY-EEEQEGKAELQ-RALSKANSEVAQWR 1375

Query:   634 SLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDG-IFELEKTLTERGSELSSLQ 692
             + + E  ++  Q+++  E+ + K+ +     EE +  ++     LEKT     +E+  L 
Sbjct:  1376 T-KYETDAI--QRTEELEEAKKKLAQRLQAAEEHVEAVNAKCASLEKTKQRLQNEVEDLM 1432

Query:   693 EKHINVE 699
                I+VE
Sbjct:  1433 ---IDVE 1436

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016459 "myosin complex" evidence=IDA

GO:0032982 "myosin filament" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0008039601 hypothetical protein (1074 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	748
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-15
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-14
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-13
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-12
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-10
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-10
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-08
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-07
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	6e-07
pfam05478	807	pfam05478, Prominin, Prominin	9e-07
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	1e-06
PRK10929	1109	PRK10929, PRK10929, putative mechanosensitive chan	3e-06
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	6e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-05
COG3096	1480	COG3096, MukB, Uncharacterized protein involved in	7e-05
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	9e-05
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	1e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	1e-04
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	2e-04
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	2e-04
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	2e-04
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	2e-04
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	3e-04
COG3264	835	COG3264, COG3264, Small-conductance mechanosensiti	5e-04
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.001
PHA02562	562	PHA02562, 46, endonuclease subunit; Provisional	0.001
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	0.001
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.002
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.003
pfam13166	713	pfam13166, AAA_13, AAA domain	0.003
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.004
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.004
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.004
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 80.5 bits (199), Expect = 2e-15
 Identities = 93/351 (26%), Positives = 173/351 (49%), Gaps = 14/351 (3%)

Query: 345  KELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQ 404
            +E+E L  KI  +E+++   ++ +++L + L   EEE + L  ++ E+S +    +  + 
Sbjct: 677  REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736

Query: 405  DLMAESSQLKEKMVEKEREVSSLVEMHEV---RGNETLAQIKELQAQVTGLELELESLQA 461
             L AE  QL+E++ +  +E++ L    E    R  E   ++ E +A++  LE ++E L+ 
Sbjct: 737  RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796

Query: 462  HNRDMVVQIDSKAAAAKQLEEENLQLQARISDLE---MLTKERGDELTTTIMKLEANESE 518
              + +   +D   A    L EE   L+ R+  LE     T+ R ++L   I +L  +   
Sbjct: 797  ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856

Query: 519  SLSRIENLTAQINDLLADLDSLHNEKSKLEEHMV---FKDDEASTQVKGLMNQVDTLQQE 575
              + IE L   I +L ++L++L NE++ LEE +     + +E S +++ L ++   L++E
Sbjct: 857  LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916

Query: 576  LESLRGQKAVLEVQLEE---KTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARI 632
            LE LR + A LE++LE    +   + E + E   L  E      ++ KI ++ E    R+
Sbjct: 917  LEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA--EALENKIEDDEEEARRRL 974

Query: 633  KSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTE 683
            K LE ++  LG       E+     E    LT +K  L +    LE+ + E
Sbjct: 975  KRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 75.9 bits (187), Expect = 5e-14
 Identities = 92/346 (26%), Positives = 169/346 (48%), Gaps = 21/346 (6%)

Query: 317  RRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLT 376
            R ++E E+   +L    ++L EE   L  EL +L   +  + +QLE  ++++ +L + L 
Sbjct: 667  RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726

Query: 377  ATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGN 436
            A EEE + L  ++ E+  E ++ +  +++L     +L+E++   E  ++ L E  E    
Sbjct: 727  ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE---- 782

Query: 437  ETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEM 496
            E   + + LQ ++  LE ELE  +     +  +++S     ++LE+E  +L+  I +LE 
Sbjct: 783  ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELE- 841

Query: 497  LTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDD 556
               E+ DEL   + +LE    E    +E L A+  +L  +L  L  EK +LEE +     
Sbjct: 842  ---EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL----R 894

Query: 557  EASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYII---------EVQIL 607
            E  +++  L  +++ L++ LE L  +   LEV+L E   E+ E            E++ L
Sbjct: 895  ELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERL 954

Query: 608  KEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQM 653
            +EEI     V  + +EE E +  R + L+ +   L   K  L E +
Sbjct: 955  EEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVI 1000

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 74.8 bits (184), Expect = 1e-13
 Identities = 91/364 (25%), Positives = 175/364 (48%), Gaps = 31/364 (8%)

Query: 289 ELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNE-EKLVLGKEL 347
           E E +L    E++ R  ++L+ E E  L ++E   + AE  +    +L E E  +L  +L
Sbjct: 176 EAERKLERTEENLER-LEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKL 234

Query: 348 ETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLM 407
           + LR ++  +E++L   ++E+ +L + L   E+E + L  ++ E+  E ++ Q       
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQ------- 287

Query: 408 AESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMV 467
            E  +LKE++ E E E+S L E  E    E   +++EL+ ++  L+ ++E+L+    +  
Sbjct: 288 EELLELKEEIEELEGEISLLRERLE----ELENELEELEERLEELKEKIEALKEELEERE 343

Query: 468 VQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLT 527
             ++       +LEE   +L+ ++S L    +E  + L   + +LEA  +E  + +E L 
Sbjct: 344 TLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403

Query: 528 AQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLE 587
            +I  L   L+ L      L+E                  ++  L+ ELE L+ +   L 
Sbjct: 404 REIESLEERLERLSERLEDLKE------------------ELKELEAELEELQTELEELN 445

Query: 588 VQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKS 647
            +LEE   ++ E    ++ L+ E+    E  Q++ +E+ SL AR+  LE E  +    ++
Sbjct: 446 EELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505

Query: 648 DLEE 651
            LE 
Sbjct: 506 VLEA 509

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 72.0 bits (177), Expect = 8e-13
 Identities = 126/596 (21%), Positives = 246/596 (41%), Gaps = 39/596 (6%)

Query: 142 LEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENA 201
           LE++ L  R+    EE E L  E + A   ++E    ++ L+ + E L  E  +L  E  
Sbjct: 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE 284

Query: 202 ELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKL 261
           EL ++L A     + L ++   ++ +L     + E L  + +   SK+ E  E +  L+ 
Sbjct: 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344

Query: 262 EAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEE 321
           + E L  ++    A   EL+ +L        EL  +LE +      L ++  ++   +E 
Sbjct: 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404

Query: 322 GEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEE 381
            E   E L +  ++L +E   L K+LE    ++  ++ +LE  ++E+ +L + L   EE 
Sbjct: 405 LEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEA 462

Query: 382 NKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKM--VEKEREVSSLVEMHEVRGNETL 439
            + L  ++ E       A+  +  L A    L+     +E   E    +  ++   +  L
Sbjct: 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL 522

Query: 440 AQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAA--AAKQLEEENLQLQARISDLEML 497
             + EL +   G E  +E+        VV  +  AA  A   L++  L    R++ L  L
Sbjct: 523 GVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNEL---GRVTFLP-L 578

Query: 498 TKERGDELTTTIMKLEANESESLSRIENL-------TAQINDLLA------DLDSLHNEK 544
              +G E+     ++  N    L   ++L          ++ LL       DLD+     
Sbjct: 579 DSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELA 638

Query: 545 SKLEEHMVF----------------KDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEV 588
            KL                         + ++ +     +++ L++++E L  + A LE 
Sbjct: 639 KKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698

Query: 589 QLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSD 648
            L E  +E+ E   E++ L++E+   +     + +++  L A ++ LE  +A L  + ++
Sbjct: 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758

Query: 649 LEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASA 704
           LE ++    E      EE       I ELE  + +   EL +L+E    +  + + 
Sbjct: 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 71.3 bits (175), Expect = 1e-12
 Identities = 80/352 (22%), Positives = 166/352 (47%), Gaps = 13/352 (3%)

Query: 179  IRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEAL 238
            ++ L+ E   L  +  KL  E   L  +L +   +  EL R++ +++RQL       E L
Sbjct: 669  LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL-------EEL 721

Query: 239  NLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRL 298
              E      ++++ +  +  L+ E E L  ++ E      EL+++L    E  A+L   +
Sbjct: 722  KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781

Query: 299  EDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNME 358
            E++   +  L  E E +   +EE E+  + L    + L + +  L +E+E L  +I  +E
Sbjct: 782  EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELE 841

Query: 359  QQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMV 418
            ++L+  ++E+ +L + L   +EE + L  +  E+ +E ++ +   ++L  E  +L+ ++ 
Sbjct: 842  EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELA 901

Query: 419  EKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAK 478
            E + E+  L E    R  E  A+++ L+ ++  LE ELE       +  ++ + +    +
Sbjct: 902  ELKEEIEKLRE----RLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE 957

Query: 479  QLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQI 530
                  + L+A I + E + +   +EL +    LE  + + L  IE L  + 
Sbjct: 958  IEALGPVNLRA-IEEYEEVEERY-EELKSQREDLEEAKEKLLEVIEELDKEK 1007

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 70.1 bits (172), Expect = 3e-12
 Identities = 70/344 (20%), Positives = 152/344 (44%), Gaps = 29/344 (8%)

Query: 278 AELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLN 337
            E+++ +     +  E   +LE + R+++     +  +L+   E E           +L 
Sbjct: 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQA-LLKEKREYE---------GYELL 229

Query: 338 EEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEM-SNEF 396
           +EK  L ++ E +  +++++E++LE   +E+S+L + L   E+  + L  KI ++   E 
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 397 QQAQNLIQDLMAESSQLKEKMVEKEREVSSLVE---MHEVRGNETLAQIKEL-------Q 446
            + +  I +L AE + L+  + EKERE+    E     E   ++ LA+I+EL       +
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 447 AQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELT 506
            +   L  E   L+    D+  +++       +  +E    + ++  L    K   +EL 
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL----KREINELK 405

Query: 507 TTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLM 566
             + +L+         + +L A I  + A ++ L  EK         +  +   +++ L 
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL----EIKKQEWKLEQLA 461

Query: 567 NQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEE 610
             +   +QEL  L+ +   +E +L +  RE++E   + +  +E 
Sbjct: 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 68.9 bits (169), Expect = 7e-12
 Identities = 73/318 (22%), Positives = 138/318 (43%), Gaps = 18/318 (5%)

Query: 151 MTATSEEKEALNLEYQSALSR----IQEAGELIRNLKLEAESLNTEKLKLTVENAELNQK 206
           +T  S +  +  LE +  +      I+E  E I  L+     L         E  EL ++
Sbjct: 661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRK-------ELEELEEE 713

Query: 207 LDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESL 266
           L+   K   EL+R++S +++ L     E E L         ++ E E  I  L+   E  
Sbjct: 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773

Query: 267 NNDMLEGLAVNAELKQK-------LSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRV 319
             ++ E  A   EL+ +       L    E   EL   L  ++ +  NL    E++ RR+
Sbjct: 774 EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833

Query: 320 EEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATE 379
              E+  EDL    ++L+E+   L  E+E L   I  +E +LE+   E + L + L    
Sbjct: 834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893

Query: 380 EENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETL 439
            E + L+ ++ E+ ++  + +  +++L  + +QL+ ++   E  + +L E      + TL
Sbjct: 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL 953

Query: 440 AQIKELQAQVTGLELELE 457
            + + L+ ++   E E  
Sbjct: 954 EEAEALENKIEDDEEEAR 971

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.4 bits (165), Expect = 2e-11
 Identities = 76/312 (24%), Positives = 152/312 (48%), Gaps = 19/312 (6%)

Query: 347 LETLRGKISNMEQQLESSKQEVSDLSQNLTATEE----ENKSLTLKISEMSNEFQQAQNL 402
           LE L   +  +E+QLE  +++     +      E    E   L  K+ E+  E ++ +  
Sbjct: 188 LERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEE 247

Query: 403 IQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAH 462
           +  L  E  +L+E++ E E+E+  L    +    E   +++ELQ ++  L+ E+E L+  
Sbjct: 248 LSRLEEELEELQEELEEAEKEIEEL----KSELEELREELEELQEELLELKEEIEELEGE 303

Query: 463 NRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSR 522
              +  +++      ++LEE   +L+ +I  L    KE  +E  T + +LE   +E    
Sbjct: 304 ISLLRERLEELENELEELEERLEELKEKIEAL----KEELEERETLLEELEQLLAELEEA 359

Query: 523 IENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQ 582
            E L  +++ LL +L+ L     +       +  E   ++  + N+++ L++E+ESL  +
Sbjct: 360 KEELEEKLSALLEELEELFEALRE-------ELAELEAELAEIRNELEELKREIESLEER 412

Query: 583 KAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASL 642
              L  +LE+   E+ E   E++ L+ E+    E  +++ E++E L  R+K LE E+A L
Sbjct: 413 LERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Query: 643 GNQKSDLEEQMR 654
             +   LE+++ 
Sbjct: 473 QEELQRLEKELS 484

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 67.0 bits (164), Expect = 2e-11
 Identities = 70/338 (20%), Positives = 144/338 (42%), Gaps = 9/338 (2%)

Query: 125 EYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKL 184
           E ++    ++ +L+    E+  LK  + +  +  E L  + +    +++E    +  L+ 
Sbjct: 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEE 730

Query: 185 EAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQT 244
           E E L +   +L  E  EL ++L+       EL   + +++ +L +  E    L  E + 
Sbjct: 731 ELEQLQSRLEELEEELEELEEELE-------ELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 245 ALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRD 304
              K Q  +E +  L+ E E     +         L+Q+     +   EL   +E++   
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843

Query: 305 KDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESS 364
            D L  E E + + +EE ++  E+L    ++L +E   L +E E L  ++  +E +L   
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903

Query: 365 KQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREV 424
           K+E+  L + L   E + + L +++ E+  E +  +     L  E  +  E++ E+   +
Sbjct: 904 KEEIEKLRERLEELEAKLERLEVELPELEEELE--EEYEDTLETELEREIERLEEEIEAL 961

Query: 425 SSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAH 462
             +         E   + +EL++Q   LE   E L   
Sbjct: 962 GPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 66.6 bits (163), Expect = 4e-11
 Identities = 75/359 (20%), Positives = 158/359 (44%), Gaps = 26/359 (7%)

Query: 180  RNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALN 239
            R+   E + L      L  E + L  +L        EL++E+SD  R++    +E E L 
Sbjct: 670  RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 240  LEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLE 299
             E +    +++E EE + +L+ E E++ +++ E   + A +++      +LE  LN    
Sbjct: 730  QEEEKLKERLEELEEDLSSLEQEIENVKSELKE---LEARIEELEEDLHKLEEALNDLEA 786

Query: 300  DISRDK-DNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNME 358
             +S  +   +  E   +   V   E    ++    ++L  EK  L KE++ L+ +  +++
Sbjct: 787  RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846

Query: 359  QQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMV 418
            +Q++S ++E+ +L+      EEE + L   + ++ +     +    +L A+  +L+    
Sbjct: 847  EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE---- 902

Query: 419  EKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAK 478
             K  E+ + +E    R +E  A+++ L+ +++ +E               +I  +  + +
Sbjct: 903  RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED--------EEIPEEELSLE 954

Query: 479  QLEEENLQLQARISDLEML----------TKERGDELTTTIMKLEANESESLSRIENLT 527
             ++ E  +++  I  LE +            +R DEL     KLE      L RIE   
Sbjct: 955  DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 65.5 bits (160), Expect = 7e-11
 Identities = 72/328 (21%), Positives = 145/328 (44%), Gaps = 15/328 (4%)

Query: 388 KISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQA 447
           ++ E+    ++   +I +   +  +L+ +  + ER  + L E  E  G E L + + L+ 
Sbjct: 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALER 237

Query: 448 QVTGLELELESLQAHNRDMVVQIDSK----AAAAKQLEEENLQLQARISDLEMLTKERGD 503
           Q   +E +L SL+     +  +I           + LEE N +++    + ++  KE+  
Sbjct: 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG 297

Query: 504 ELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVK 563
           EL   I  LE + +E    +E+   ++  L A++D L  E  +LE  +    +E   +  
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI----EEERKRRD 353

Query: 564 GLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILE 623
            L  +   L++ELE LR +   ++ +  E   E+ +Y  +++ LK EI        ++ E
Sbjct: 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413

Query: 624 EIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEE-------KLGLLDGIFE 676
           E++ L+  +  L   +A +  + ++LEE+   K  E      +              +++
Sbjct: 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473

Query: 677 LEKTLTERGSELSSLQEKHINVENKASA 704
           L++       ELS LQ +    E +A A
Sbjct: 474 LKEEYDRVEKELSKLQRELAEAEAQARA 501

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.5 bits (160), Expect = 9e-11
 Identities = 88/363 (24%), Positives = 171/363 (47%), Gaps = 17/363 (4%)

Query: 277  NAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQL 336
              EL+++L+       +L   L+ +  +  +L    E + R++EE E+  E+L+     L
Sbjct: 669  LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL 728

Query: 337  NEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEF 396
             EE   L   LE L  ++  +E++LE  ++ + +L + L + EE    L  +I E+  + 
Sbjct: 729  EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788

Query: 397  QQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELEL 456
            Q  Q  +++L  E  + + ++   ERE+ SL    E R      +I+EL+ ++  LE +L
Sbjct: 789  QALQEELEELEEELEEAERRLDALERELESL----EQRRERLEQEIEELEEEIEELEEKL 844

Query: 457  ESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANE 516
            + L+    ++           ++LEE   + +    +L+ L +E+ +EL   + +LE+  
Sbjct: 845  DELE---EELEELEKELEELKEELEELEAEKEELEDELKELEEEK-EELEEELRELESEL 900

Query: 517  SESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQEL 576
            +E    IE L  ++ +L A L+ L  E  +LEE +  +++   T    L  +++ L++E+
Sbjct: 901  AELKEEIEKLRERLEELEAKLERLEVELPELEEEL--EEEYEDTLETELEREIERLEEEI 958

Query: 577  ESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLE 636
            E+L         + EE      E   + + L+E         +K+LE IE L    +   
Sbjct: 959  EALGPVNLRAIEEYEEVEERYEELKSQREDLEEAK-------EKLLEVIEELDKEKRERF 1011

Query: 637  LEV 639
             E 
Sbjct: 1012 KET 1014

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 68/280 (24%), Positives = 129/280 (46%), Gaps = 13/280 (4%)

Query: 442 IKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEM---LT 498
           I+EL+ ++  LE ++  L+         +       ++LEEE  QL+  + +L       
Sbjct: 679 IEELEEKIEELEEKIAELEK-------ALAELRKELEELEEELEQLRKELEELSRQISAL 731

Query: 499 KERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD--- 555
           ++    L   + +LE   ++    +  L A+I +L   L+    E ++ E  +   +   
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 556 DEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKT 615
           ++   ++K L   +D L+ EL  L  + A L  +LE   R I+     ++ L+E+I   +
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851

Query: 616 EVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIF 675
           E  + +  EIE L   I+ LE E+ +L N+++ LEE + L   E   L+EE   L     
Sbjct: 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911

Query: 676 ELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASL 715
           EL + L E   +L+ L+ +   +E +       ++ + SL
Sbjct: 912 ELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 64.7 bits (158), Expect = 1e-10
 Identities = 110/534 (20%), Positives = 214/534 (40%), Gaps = 52/534 (9%)

Query: 199 ENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNL---EYQTALSKIQEAEEI 255
           E  +L+++L+      AEL+ E+   + Q     E ++  +    E++    +++  E  
Sbjct: 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAE 259

Query: 256 IRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRL----------EDISRDK 305
           I +L+   E++     E   +  E++       ELE E +  L          E +   +
Sbjct: 260 IEDLR---ETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARR 316

Query: 306 DNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSK 365
           + L    E +  R+EE    A+     A+ L E+   L +  E LR + + +E +LE ++
Sbjct: 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR 376

Query: 366 QEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVS 425
           + V D  + +   EEE + L  +  +   +   A++ +++L  E  +L+E+  E E  + 
Sbjct: 377 EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR 436

Query: 426 SLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENL 485
           +  E   V   E L  ++  +    G  +E         +   +++   A  + LEEE  
Sbjct: 437 TARE--RVEEAEAL--LEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVE 492

Query: 486 QLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKS 545
           +++ R+   E L      E    I +LE    +    I      I +     + L    +
Sbjct: 493 EVEERLERAEDLV-----EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAA 547

Query: 546 KLEEHMVFKDDEASTQ----------VKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTR 595
           +LE     K + A+            V  L +++  L++ +ESL         ++     
Sbjct: 548 ELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE--------RIRTLLA 599

Query: 596 EISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELE-----VASLGNQKSDLE 650
            I++   E++ L+E+     E+  +  E +     R + LE E     +      K   E
Sbjct: 600 AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAE 659

Query: 651 EQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASA 704
           E +    E+   L EE+  L   I  +E  L     EL  L+E+   +EN+  A
Sbjct: 660 EYLEQVEEKLDELREERDDLQAEIGAVENEL----EELEELRERREALENRVEA 709

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 91/376 (24%), Positives = 170/376 (45%), Gaps = 9/376 (2%)

Query: 148  KRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKL 207
            KR   A   E + L  E     +++++  E +++LK E  SL     +L  +  EL ++L
Sbjct: 659  KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 208  DAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLN 267
            +   +  A L  E+  ++ +L    EE E L  E +    +++E EE + +L+     L 
Sbjct: 719  EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 268  NDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAE 327
             ++ E       L+++L    E   E   RL+ + R+ ++L   +E + + +EE E+  E
Sbjct: 779  EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838

Query: 328  DLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTL 387
            +L    D+L EE   L KELE L       +++LE  + E  +L   L   EEE + L  
Sbjct: 839  ELEEKLDELEEELEELEKELEEL-------KEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 388  KISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQA 447
            ++ E+ +E  + +  I+ L     +L+ K+   E E+  L E  E+          EL+ 
Sbjct: 892  ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEE--ELEEEYEDTLETELER 949

Query: 448  QVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTT 507
            ++  LE E+E+L   N   + + +      ++L+ +   L+     L  + +E   E   
Sbjct: 950  EIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRE 1009

Query: 508  TIMKLEANESESLSRI 523
               +     +E+ S I
Sbjct: 1010 RFKETFDKINENFSEI 1025

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 63.9 bits (156), Expect = 2e-10
 Identities = 84/389 (21%), Positives = 168/389 (43%), Gaps = 45/389 (11%)

Query: 292  AELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLR 351
                  L+ +    + L  E  ++   +   E   ++L       + +   + KE+E L 
Sbjct: 670  RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 352  GKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESS 411
             +   ++++LE  ++++S L Q +   + E K L  +I E+  +  + +  + DL A  S
Sbjct: 730  QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789

Query: 412  QLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQID 471
                                        ++I E+QA+++ LE E+  ++A  R++  +++
Sbjct: 790  H---------------------------SRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822

Query: 472  SKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQIN 531
                  + LE+E  +LQ +  DL+   K    E+     K E  E E    +E L A + 
Sbjct: 823  RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE----LEELEAALR 878

Query: 532  DLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLE 591
            DL + L  L  E+ +LE  +           + L  +++ L+ ++E  R + + L+ +LE
Sbjct: 879  DLESRLGDLKKERDELEAQL-----------RELERKIEELEAQIEKKRKRLSELKAKLE 927

Query: 592  EKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEE 651
                E+SE         EEI  +    + +  E++ +   I++LE  V  L  Q+ +   
Sbjct: 928  ALEEELSEIEDPKGED-EEIPEEELSLEDVQAELQRVEEEIRALE-PVNMLAIQEYEEVL 985

Query: 652  QMRLKIEEGFH-LTEEKLGLLDGIFELEK 679
            +   +++E    L EE+  +L+ I E EK
Sbjct: 986  KRLDELKEKRAKLEEERKAILERIEEYEK 1014

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.2 bits (154), Expect = 4e-10
 Identities = 80/325 (24%), Positives = 154/325 (47%), Gaps = 11/325 (3%)

Query: 379 EEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNET 438
           +E  +    K+       ++ ++L+++L  +  +L+ +  + ER      E+ E+     
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230

Query: 439 LAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLT 498
           LA++KEL+ ++  LE EL  L+    ++  +++      ++L+ E  +L+  + +L+   
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQ--- 287

Query: 499 KERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEA 558
            E   EL   I +LE   S    R+E L  ++ +L   L+ L  +   L+E +    +E 
Sbjct: 288 -EELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL----EER 342

Query: 559 STQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQ 618
            T ++ L   +  L++  E L  + + L  +LEE    + E + E++    EI N+ E  
Sbjct: 343 ETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEEL 402

Query: 619 QKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELE 678
           ++   EIESL  R++ L   +  L  +  +LE ++     E   L EE   L + + EL 
Sbjct: 403 KR---EIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459

Query: 679 KTLTERGSELSSLQEKHINVENKAS 703
             L E   EL+ LQE+   +E + S
Sbjct: 460 DRLKELERELAELQEELQRLEKELS 484

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 62.8 bits (153), Expect = 6e-10
 Identities = 48/269 (17%), Positives = 113/269 (42%), Gaps = 1/269 (0%)

Query: 133 MKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNL-KLEAESLNT 191
           ++++ +A   +++ L+  +   +EE   L    +     ++E  + I++L + E   +  
Sbjct: 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294

Query: 192 EKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQE 251
           +  +L  E A L + +    +   +    ++ ++ ++     E E L  E +    +  +
Sbjct: 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354

Query: 252 AEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIME 311
             E    LK E E L  ++ E     AE + +L    E   +L   + ++ R+ D L  E
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

Query: 312 KETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDL 371
            + +   + +       +    ++L EEK     E++    K+  +   L   +QE+ DL
Sbjct: 415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474

Query: 372 SQNLTATEEENKSLTLKISEMSNEFQQAQ 400
            +     E+E   L  +++E   + + ++
Sbjct: 475 KEEYDRVEKELSKLQRELAEAEAQARASE 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 67/311 (21%), Positives = 143/311 (45%), Gaps = 18/311 (5%)

Query: 142 LEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENA 201
           LE++ L  ++    +E E L  E       ++E  E +   + E E L +E  +L  E  
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284

Query: 202 ELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKL 261
           EL ++L    +   EL  E+S ++ +L              +   ++++E EE +  LK 
Sbjct: 285 ELQEELLELKEEIEELEGEISLLRERL--------------EELENELEELEERLEELKE 330

Query: 262 EAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEE 321
           + E+L  ++ E   +  EL+Q L+   E + EL  +L  +  + + L          + E
Sbjct: 331 KIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE---ELAE 387

Query: 322 GEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEE 381
            E    ++RN  ++L  E   L + LE L  ++ +++++L+  + E+ +L   L    EE
Sbjct: 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEE 447

Query: 382 NKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQ 441
            + L  ++ E+ +  ++ +  + +L  E  +L++++   E  +  L E  +       A 
Sbjct: 448 LEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRL-EAEQRASQGVRAV 506

Query: 442 IKELQAQVTGL 452
           ++ L++ + G+
Sbjct: 507 LEALESGLPGV 517

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 8e-09
 Identities = 67/279 (24%), Positives = 131/279 (46%), Gaps = 6/279 (2%)

Query: 420 KEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQ 479
           + +E+   +   E +  +   ++K L+ ++  LE  LE L+    ++  Q++        
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 480 LEEENLQLQARISDLEML---TKERGDELTTTIMKLEANESESLSRIENLTAQINDLLAD 536
           LEEE  QLQ+R+ +LE      +E  +EL   + +LE         +  L  +I +L   
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 537 LDSLHNEKSKLEE---HMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEK 593
             +L  E  +LEE       + D    +++ L  + + L+QE+E L  +   LE +L+E 
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847

Query: 594 TREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQM 653
             E+ E   E++ LKEE+      ++++ +E++ L    + LE E+  L ++ ++L+E++
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907

Query: 654 RLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQ 692
               E    L  +   L   + ELE+ L E   +    +
Sbjct: 908 EKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETE 946

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 58.9 bits (143), Expect = 8e-09
 Identities = 72/315 (22%), Positives = 151/315 (47%), Gaps = 16/315 (5%)

Query: 383 KSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMH---EVRGNETL 439
           +S   ++  +    +  +  +  L +E  +++ ++ E  +E+S         E    +  
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 440 AQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLE-MLT 498
            + ++L+ ++  LE +L SL+    ++  ++    A  ++LEE+  +L+  ++DLE  L+
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789

Query: 499 KERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEA 558
             R  E+   + KLE    E +SRIE   A++ ++   L+ L  EK  LE+ +     E 
Sbjct: 790 HSRIPEIQAELSKLE----EEVSRIE---ARLREIEQKLNRLTLEKEYLEKEI----QEL 838

Query: 559 STQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQ 618
             Q   L  Q+ ++++E+E+L G+K  LE +LEE    + +    +  LK+E        
Sbjct: 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898

Query: 619 QKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELE 678
           +++  +IE L A+I+     ++ L  +   LEE++  +IE+     EE       + +++
Sbjct: 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELS-EIEDPKGEDEEIPEEELSLEDVQ 957

Query: 679 KTLTERGSELSSLQE 693
             L     E+ +L+ 
Sbjct: 958 AELQRVEEEIRALEP 972

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.5 bits (142), Expect = 1e-08
 Identities = 73/310 (23%), Positives = 146/310 (47%), Gaps = 27/310 (8%)

Query: 412 QLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQID 471
           +L+E++ E + E+    E  E    E  A+++EL+ ++  L LE+  L+           
Sbjct: 236 ELREELEELQEELKEAEEELE----ELTAELQELEEKLEELRLEVSELEE---------- 281

Query: 472 SKAAAAKQLEEENLQLQARISDLE---MLTKERGDELTTTIMKLEANESESLSRIENLTA 528
                 ++L++E   L   IS LE    + +ER   L   + +LEA   E  S+++ L  
Sbjct: 282 ----EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337

Query: 529 QINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEV 588
           ++ +L   L+ L  E   LE     + +E   +++ L ++++ L+++LE+LR + A LE+
Sbjct: 338 ELAELEEKLEELKEELESLEA----ELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393

Query: 589 QLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSD 648
           Q+     EI      ++ L++      +  +++L+++E   A +K L+ E+  L  +  +
Sbjct: 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEE 451

Query: 649 LEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITA 708
           L+E++    E    L EE       +   E+ L +  + L SL+    N+E  +      
Sbjct: 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511

Query: 709 MAAQASLPQI 718
           +  Q+ L  I
Sbjct: 512 LKNQSGLSGI 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 62/322 (19%), Positives = 130/322 (40%), Gaps = 15/322 (4%)

Query: 135 QELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKL 194
           ++++    +++EL++ +    +E E L  E +     ++E    I  L+ +   L  E  
Sbjct: 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743

Query: 195 KLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTAL-------S 247
           +L    A+L+++L        EL   + + + +L     E E L  + +           
Sbjct: 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803

Query: 248 KIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDN 307
            + E    +  L  EA +L   +       A  +++L    E   EL+  +E ++ + + 
Sbjct: 804 ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863

Query: 308 LIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQE 367
           L    E +   +E        L  +   L  E   L +EL  L  K S + ++LE  +++
Sbjct: 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923

Query: 368 VSDLSQNLTATEEENKSLTLKISEM-SNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSS 426
           ++ L   L   E    +L  ++SE  S   ++A+ L   +  +  + + ++   E ++  
Sbjct: 924 LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983

Query: 427 LVEMHEVRGNETLAQIKELQAQ 448
           L       G   LA I+E +  
Sbjct: 984 L-------GPVNLAAIEEYEEL 998

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 54/283 (19%), Positives = 121/283 (42%), Gaps = 1/283 (0%)

Query: 148 KRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKL 207
           +       +EKEAL  + ++   ++    E +  L  E   L     ++     ELN+K+
Sbjct: 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI 281

Query: 208 DAAGKIEA-ELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESL 266
              G+ E   +  ++ +++ ++ +          E + A  ++ + E  I  L  E E L
Sbjct: 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341

Query: 267 NNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIA 326
             ++ E      +L ++ +   E   +L   LE++ ++      E +    ++E+ ++  
Sbjct: 342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401

Query: 327 EDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLT 386
            +L+   D+L EE   L +EL  L   I+ +E ++   ++E  D +  +   E + + L 
Sbjct: 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461

Query: 387 LKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVE 429
             +S+   E    +     +  E S+L+ ++ E E +  +  E
Sbjct: 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 118/552 (21%), Positives = 239/552 (43%), Gaps = 37/552 (6%)

Query: 123 ESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNL 182
               ++     ++EL+    E++E+   +    EE E L  E +     ++E  E I  L
Sbjct: 188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEEL 243

Query: 183 KLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEY 242
           + E ESL   K KL  +  EL ++++   K   EL  +V ++K +L  ++EE   L+  Y
Sbjct: 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFY 302

Query: 243 QTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDIS 302
           +  L +++E E+ +  L+ E   +   + E       L++      ELE  L    E   
Sbjct: 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE 362

Query: 303 RDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLE 362
             ++    ++E    +        E L    ++L + K  + +E+  +  +I  ++++++
Sbjct: 363 LYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIK 422

Query: 363 SSKQEVSDLSQ--------NLTATEEENKSL----TLKISEMSNEFQQAQNLIQDLMAES 410
             K+ + +L +            TEE  K L    T ++  +  E ++ +   + L  E 
Sbjct: 423 ELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKEL 482

Query: 411 SQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELE--------LESLQAH 462
            +L EK+++KE E+  L E+ E        Q+KEL+ ++    LE         E L+  
Sbjct: 483 REL-EKVLKKESELIKLKELAE--------QLKELEEKLKKYNLEELEKKAEEYEKLKEK 533

Query: 463 NRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSR 522
              +  +I S     ++LEE   +L      L+ L +E  + L         +  E   R
Sbjct: 534 LIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER 593

Query: 523 IENLTAQINDLLADLDSLHNEKSKLEEHMVFKD--DEASTQVKGLMNQVDTLQQELESLR 580
           ++ L    N+ L   D+    + + +E    ++  D+A  ++     +++ L++ELE L 
Sbjct: 594 LKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653

Query: 581 GQKAVLEVQ-LEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEV 639
            + +  E + L E+  E+S  +  ++   EE+  + E  +K LE+++      +  + E+
Sbjct: 654 KKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713

Query: 640 ASLGNQKSDLEE 651
             L      +EE
Sbjct: 714 EKLEKALERVEE 725

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 57.5 bits (139), Expect = 2e-08
 Identities = 112/615 (18%), Positives = 249/615 (40%), Gaps = 33/615 (5%)

Query: 14  FGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKEPLVELIEGFHSQYQSL 73
           FG     +  E LK    E + K +++   + +     +D ++    EL E    +    
Sbjct: 164 FGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQE 223

Query: 74  YAQYDNLRGELKKKIHGKKENETYSSSSSDSDSDSDHSSKNKSNKNGELESEYQKTTDGM 133
             + + L  E++       E E       +  +        +       E E ++    +
Sbjct: 224 EQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLL 283

Query: 134 KQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEK 193
           ++ L+     + EL+R      EE E      ++ L  ++E  E +++L+   E L  + 
Sbjct: 284 EE-LEEKIERLEELERE----IEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKL 338

Query: 194 LKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAE 253
            KL  E  EL ++ +   K+  E  +E+ +   +L    E+      + + A   IQE +
Sbjct: 339 EKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEA---IQELK 395

Query: 254 EIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKE 313
           E +  L    E +  ++ E      EL+++L    E   +L  ++  +   +  +     
Sbjct: 396 EELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAG 455

Query: 314 TVLR-------RVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQ 366
              +         EE EK   +L     +  EE+L   KE   LR +I  +E++L   ++
Sbjct: 456 AGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEE 515

Query: 367 EVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSS 426
           E+ +L +     E   + L  K+ ++ N  ++ + L + L  +  + + + +E   +   
Sbjct: 516 ELIELLELE---EALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELK 572

Query: 427 LVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQ 486
            +            +++EL+ ++  L+ +L+ L+     +   + S      +L E   +
Sbjct: 573 ELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQS-----LELSEAENE 627

Query: 487 LQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSK 546
           L+    +LE    E+ +        L+A   E   ++E L A+I   L  +++    + K
Sbjct: 628 LEEAEEELESE-LEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEK 686

Query: 547 LEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQI 606
           LEE      ++   +++ L  +++ L ++L  +         +LE +  E+ E   E++ 
Sbjct: 687 LEEL-----EQLEEELEQLREELEELLKKLGEIEQL----IEELESRKAELEELKKELEK 737

Query: 607 LKEEIVNKTEVQQKI 621
           L++ +    E+++K+
Sbjct: 738 LEKALELLEELREKL 752

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.3 bits (136), Expect = 5e-08
 Identities = 61/248 (24%), Positives = 117/248 (47%), Gaps = 14/248 (5%)

Query: 450 TGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKE---RGDELT 506
              + EL+ L+    ++  Q++      K L+ E   L+  + +L    +E   + +EL 
Sbjct: 663 LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK 722

Query: 507 TTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLM 566
             +  LE    +  SR+E L  ++ +L  +L+ L     +LEE +           + L 
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEEL-----------ESLE 771

Query: 567 NQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIE 626
             +  L++E+E L  ++  L+ +LEE   E+ E    +  L+ E+ +  + ++++ +EIE
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 627 SLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGS 686
            L   I+ LE ++  L  +  +LE+++    EE   L  EK  L D + ELE+   E   
Sbjct: 832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 687 ELSSLQEK 694
           EL  L+ +
Sbjct: 892 ELRELESE 899

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 70/315 (22%), Positives = 136/315 (43%), Gaps = 25/315 (7%)

Query: 134  KQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEK 193
            +  LD  + E+S+  R++    +E E L  E +    R++E  E + +L+ E E++ +E 
Sbjct: 701  ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSEL 760

Query: 194  LKLTVENAELNQKL----DAAGKIEAELNR---------------EVSDMKRQLTARSEE 234
             +L     EL + L    +A   +EA L+                EVS ++ +L    ++
Sbjct: 761  KELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK 820

Query: 235  KEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAEL 294
               L LE +    +IQE +E   +LK + +S+  ++        EL+++L        +L
Sbjct: 821  LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880

Query: 295  NHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKI 354
              RL D+ +++D L  +   + R++EE E   E  R    +L  +   L +EL  +    
Sbjct: 881  ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940

Query: 355  SNMEQQ------LESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMA 408
               E+       LE  + E+  + + + A E  N     +  E+     + +     L  
Sbjct: 941  GEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEE 1000

Query: 409  ESSQLKEKMVEKERE 423
            E   + E++ E E++
Sbjct: 1001 ERKAILERIEEYEKK 1015

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.1 bits (133), Expect = 1e-07
 Identities = 64/307 (20%), Positives = 135/307 (43%), Gaps = 11/307 (3%)

Query: 180 RNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALN 239
           R      ++L  EK +   E  EL ++ +A  + +  + R+++ ++ +L   +EE   L 
Sbjct: 207 REKAERYQALLKEKRE--YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELE 264

Query: 240 LEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLE 299
              +     ++E  + I++L         + L       EL+ +++      AE    LE
Sbjct: 265 KRLEEIEQLLEELNKKIKDLG------EEEQLRVKEKIGELEAEIASLERSIAEKERELE 318

Query: 300 DISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQ 359
           D       L  E + +L  +EE E+  E+ R   D+L EE   L +ELE LR ++  +++
Sbjct: 319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK 378

Query: 360 QLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVE 419
           +   ++ E+ D  + L   + E   L  ++  +  E Q+    + DL A  + ++ K+ E
Sbjct: 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438

Query: 420 KEREVSSL---VEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAA 476
            E E       ++  E +  +  A + + + ++  L+ E + ++     +  ++    A 
Sbjct: 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498

Query: 477 AKQLEEE 483
           A+  EE 
Sbjct: 499 ARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 126/565 (22%), Positives = 243/565 (43%), Gaps = 40/565 (7%)

Query: 121 ELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIR 180
           ELE +  +  + ++  L+A   E+ ELK+      E++E    E +  +  ++E    + 
Sbjct: 189 ELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEE---ELEQEIEALEERLAELE 245

Query: 181 NLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNL 240
             K   E L    L++     E  +  +   +    L  E+ +   +L     E E L  
Sbjct: 246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEE 305

Query: 241 EYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELK-------QKLSIAGELEAE 293
           E +   + ++E EE++  LK   E L     +   + +EL+       +   +  E   E
Sbjct: 306 ELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKE 365

Query: 294 LNHRLEDIS-------RDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKE 346
           L  RLE++             L    + +   + E     E+++   ++L +E   L +E
Sbjct: 366 LEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERE 425

Query: 347 LETLRGKISNMEQQLESSKQEVSDLSQNLTA-----------TEEENKSLTLKISEMSNE 395
           LE L  +I  +E+Q+   + +   +++   A            EE  K L         E
Sbjct: 426 LEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEE 485

Query: 396 FQQ---AQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGL 452
            ++    +    +L  E  +L++++ E E E+  L+E+ E    E   ++++L+  +  L
Sbjct: 486 LEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEEL 545

Query: 453 ELELESLQAHN-RDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMK 511
           E   E LQ    ++ + Q++ +    K+L EE   L+ R  +LE L +ER  EL   + +
Sbjct: 546 EELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL-RERLKELKKKLKE 604

Query: 512 LEANESESLSRIE--NLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQV 569
           LE   S+    ++   L+   N+L    + L +E  KL      ++   +  ++ L  +V
Sbjct: 605 LEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQA-ALEELEEKV 663

Query: 570 DTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKI---LEEIE 626
           + L+ E+     +    E QLEEK  E+ +   E++ L+EE+    +   +I   +EE+E
Sbjct: 664 EELEAEIRRELQRIENEE-QLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELE 722

Query: 627 SLTARIKSLELEVASLGNQKSDLEE 651
           S  A ++ L+ E+  L      LEE
Sbjct: 723 SRKAELEELKKELEKLEKALELLEE 747

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 106/473 (22%), Positives = 209/473 (44%), Gaps = 58/473 (12%)

Query: 254 EIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKE 313
           E+I+ +K   E L     + +     +++ +    +   E+   + +IS +   L  E E
Sbjct: 169 EVIKEIKRRIERLE----KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE 224

Query: 314 TVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQ 373
            + + V+E E++ E++    ++L +E   L      L  KI  +E+++E  K+E+ +L +
Sbjct: 225 KLEKEVKELEELKEEI----EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEE 280

Query: 374 NLTATEE--ENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMH 431
            +   +E  E     +K+SE   E+      I+  ++   +    + E+ +E+    E  
Sbjct: 281 KVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE-- 338

Query: 432 EVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARI 491
             R  E   ++KEL+ ++  LE   E  +                AK  +EE  +L+ R+
Sbjct: 339 --RLEELKKKLKELEKRLEELEERHELYE---------------EAKAKKEELERLKKRL 381

Query: 492 SDLEMLTKERG-DELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKL--- 547
           + L     E+  +EL     ++E   S+  +RI  L  +I +L   ++ L   K K    
Sbjct: 382 TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVC 441

Query: 548 -----EEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEE-----KTREI 597
                EEH     +E + ++K +  ++  ++++   LR +   LE  L++     K +E+
Sbjct: 442 GRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKEL 501

Query: 598 SEYIIEVQ-----ILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQ 652
           +E + E++        EE+  K E  +K+ E++  L   IKSL+ E+  L   K  L E 
Sbjct: 502 AEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAE- 560

Query: 653 MRLKIEEGFHLTEEKLGLLDGI-----FELEKTLTERGSELSSLQEKHINVEN 700
               +E+     EE+L  L        FE  + L ER  EL     +++ +++
Sbjct: 561 ----LEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKD 609

Length = 880

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 52.8 bits (127), Expect = 6e-07
 Identities = 93/543 (17%), Positives = 204/543 (37%), Gaps = 67/543 (12%)

Query: 118 KNGELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGE 177
           K+ +++ +Y++    +K++L+    ++ +   R+ A  EEK+      +  L  ++    
Sbjct: 374 KHQDVQRKYERLKQKIKEQLER---DLEKNNERLAAIREEKDRQKAAIEEDLQALESQ-- 428

Query: 178 LIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAEL------NREVSDMKRQLTAR 231
           L + L+      N E+ +L +    L Q+LD+A     EL      +  +   + +    
Sbjct: 429 LRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQA 488

Query: 232 SEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNND----MLEGLAVNAELKQKL--- 284
               E L  E +    +  EA E ++  +     L        L+       L   L   
Sbjct: 489 EANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQLSPQAGSLLHFLRNE 548

Query: 285 ------SIAGELEAELNHRL----EDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSAD 334
                 SI   +  EL  R     + +     + +      L+R++       D   +  
Sbjct: 549 APGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLD-----VPDYAANET 603

Query: 335 QLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLT--ATEEENKSLTLKISEM 392
           +L E      + L++   K    E+QL  +  E+ +  +      T  +   L L    +
Sbjct: 604 ELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDL--QRL 661

Query: 393 SNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGL 452
            NE Q  ++ ++  +AE  Q        E ++  L    +    +  A ++ L+     L
Sbjct: 662 QNEQQSLKDKLELAIAERKQQ------AETQLRQLDAQLKQLLEQQQAFLEALKDDFREL 715

Query: 453 ELELESLQAHNRDMVVQIDSK-AAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMK 511
             E     A  + +  ++D++ A  +  +E    Q +AR+ +L+   K+   EL      
Sbjct: 716 RTE---RLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELK---KQYDREL------ 763

Query: 512 LEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVF------KDDEASTQVKGL 565
             A+     + ++ L  QI +L   ++ +   + ++ E+  F        D    +   L
Sbjct: 764 --ASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNL 821

Query: 566 MNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEI 625
             Q+  L+   E L+ +   L    ++      +   E + L++++    E+ + + +E+
Sbjct: 822 AIQLRELESSAEELQQELTRLI---KDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEM 878

Query: 626 ESL 628
             L
Sbjct: 879 RQL 881

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|218602 pfam05478, Prominin, Prominin

 Score = 52.3 bits (126), Expect = 9e-07
 Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 12/160 (7%)

Query: 246 LSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDK 305
           L+++ + ++    +  E ESL  ++     +  E ++       LE   +  L+DI+   
Sbjct: 558 LNELLDIKQYTPEIDQELESLKVNLSTITLLTPEARR------NLEDLASSGLDDINFSN 611

Query: 306 DNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLES-S 364
               ++K      +      AE+L   A+ L   K  L   L+     + +++Q      
Sbjct: 612 FLKQIQKPLTEVNLNS---FAEELDALANNLPNGK--LKVALKNEALDLRSIQQNFVPPM 666

Query: 365 KQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQ 404
           +  +  L+ N+   +E +  L   + ++  E Q AQ  + 
Sbjct: 667 ESLLEKLNSNVKTLDESSNDLQNAVKDVLAEVQAAQGFLN 706

The prominins are an emerging family of proteins that among the multispan membrane proteins display a novel topology. Mouse prominin and human prominin (mouse)-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration. Length = 807

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 87/540 (16%), Positives = 217/540 (40%), Gaps = 57/540 (10%)

Query: 136 ELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLK 195
           EL+    ++++ ++  + T +E E L++EY +A+         +  L     SL   K +
Sbjct: 198 ELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELS----SLEDMKNR 253

Query: 196 LTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEI 255
              E       L    +             + +     +      +Y    + I+  ++I
Sbjct: 254 YESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQI 313

Query: 256 IRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDN---LIMEK 312
           + N+  E    +  + +   +  +    +      + +LN+++ ++   + +    +   
Sbjct: 314 LSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYD-DLNNQILELEGYEMDYNSYLKSI 372

Query: 313 ETVLRRVEEGEKIAEDLRN-----------SADQLNEEKLVLGKELETLRGKISNMEQQL 361
           E++ +++EE  K  E +               D + +E   +  +L+ +  K+S++ Q++
Sbjct: 373 ESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRI 432

Query: 362 ESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKE 421
            + ++ + +LS+N+     ++      +   +   +++ ++I     + S+L+EK+ E E
Sbjct: 433 RALRENLDELSRNMEMLNGQSVC---PVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIE 489

Query: 422 REVSSLVEMHEVRGNETLAQIKELQAQVTGLELE--------LESLQAHNRDMVVQIDSK 473
            EV  +        +E +  +K+ +  +   E+         +ES +A   D  ++I   
Sbjct: 490 IEVKDI--------DEKIVDLKKRKEYLESEEINKSINEYNKIESARADLED--IKIKIN 539

Query: 474 AAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDL 533
               K  + E ++ + +   LE L  +R          L A    SL  IE   ++ N++
Sbjct: 540 ELKDKHDKYEEIKNRYKSLKLEDLDSKRTS-------WLNALAVISLIDIETNRSRSNEI 592

Query: 534 LADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLE---VQL 590
              L+ L  E    E  + F DD++          +  ++ E  +L  +   ++   + +
Sbjct: 593 KKQLNDL--ESRLQEIEIGFPDDKSYID-----KSIREIENEANNLNNKYNEIQENKILI 645

Query: 591 EEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLE 650
           E+   +I  Y  ++  +   I +  E+  +I +  ++L    K+L+   A+    +S +E
Sbjct: 646 EKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIE 705

Length = 895

>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional

 Score = 50.4 bits (121), Expect = 3e-06
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 33/210 (15%)

Query: 354 ISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKIS----EMSNEFQQAQNLIQDLMAE 409
            + + QQL + + E   +  N++    E +   L++S    E S + QQ Q+  +++   
Sbjct: 81  SAELRQQLNNERDEPRSVPPNMSTDALEQE--ILQVSSQLLEKSRQAQQEQDRAREISDS 138

Query: 410 SSQLKEKMVEKEREVSSLVEMHEVRGN----ETLAQIKELQAQVTGL-----ELELESLQ 460
            SQL ++  E  R+++ +    +  G        AQ+  LQA+   L     ELEL  L 
Sbjct: 139 LSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLS 198

Query: 461 AHNRDMVVQIDSKAAAAKQLEEENLQLQARISDL---------------EMLTKERGDEL 505
           A+NR  + ++ S+  A K+ ++ +  LQA  + L               E+L ++ GD  
Sbjct: 199 ANNRQELARLRSE-LAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLP 257

Query: 506 TTTIMKLEANESESLSRIENLTAQINDLLA 535
            + + + + N    LS+  N  AQ  DL+A
Sbjct: 258 KSIVAQFKIN--RELSQALNQQAQRMDLIA 285

Length = 1109

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 39/213 (18%), Positives = 89/213 (41%), Gaps = 3/213 (1%)

Query: 342 VLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQN 401
              K+L+ ++ +I+ +E+++   + + + L + L + E E  SL  ++ E +++ ++ + 
Sbjct: 35  ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94

Query: 402 LIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQA 461
            I DL A  + L+ +  E+ R ++  +   +  G      +                  A
Sbjct: 95  QIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGA 154

Query: 462 HNRDMVVQIDSKAAAAKQL---EEENLQLQARISDLEMLTKERGDELTTTIMKLEANESE 518
            N     +ID+  A  KQL     E    QA ++ L    + +  +L   + + +   ++
Sbjct: 155 LNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQ 214

Query: 519 SLSRIENLTAQINDLLADLDSLHNEKSKLEEHM 551
             S +     ++ +L A+   L NE +  E   
Sbjct: 215 LNSELSADQKKLEELRANESRLKNEIASAEAAA 247

Length = 420

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 7e-05
 Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 3/195 (1%)

Query: 518 ESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELE 577
           E+L R+E++  ++      L SL  +  K E +   K +    ++  L+ +++ L++ELE
Sbjct: 186 ENLDRLEDILNELE---RQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE 242

Query: 578 SLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLEL 637
            L+ +    E +LEE T E+ E   +++ L+ E+    E  +++ +E+ +L   I  LE 
Sbjct: 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302

Query: 638 EVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHIN 697
           +   L  + ++LE Q+     +   L  +   L + + ELE+ L E   EL SL+ +   
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362

Query: 698 VENKASAQITAMAAQ 712
           +E +     + +   
Sbjct: 363 LEAELEELESRLEEL 377

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 45.9 bits (110), Expect = 7e-05
 Identities = 44/172 (25%), Positives = 86/172 (50%), Gaps = 18/172 (10%)

Query: 250 QEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLI 309
           +EA+ I+   K EAE++  + L  L    E+ +  +   E E EL  R  ++ + +  L+
Sbjct: 38  EEAKRILEEAKKEAEAIKKEAL--LEAKEEIHKLRN---EFEKELRERRNELQKLEKRLL 92

Query: 310 MEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVS 369
            ++E + R++E  EK  E+L     +L +++  L K+ E L   I    Q+LE     +S
Sbjct: 93  QKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE----RIS 148

Query: 370 DLSQNLTATEEENKSLTLKISEMSNEFQ-QAQNLIQDLMAESSQLKEKMVEK 420
            L+       EE K + L+  ++  E + +A  LI+++  E+ +  +K  ++
Sbjct: 149 GLTA------EEAKEILLE--KVEEEARHEAAVLIKEIEEEAKEEADKKAKE 192

Length = 520

>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 46.0 bits (109), Expect = 7e-05
 Identities = 84/389 (21%), Positives = 165/389 (42%), Gaps = 52/389 (13%)

Query: 134 KQELDAATLEVSELKRRMTATSEEKEALNLEYQSA---LSRIQEA---GELIRNLKLEAE 187
           +Q+L A      ++ R +   +  +  L  +YQ+A   L+ +Q A    E I   + + E
Sbjct: 299 RQQLAAEQYRHVDMSRELAELNGAEGDLEADYQAASDHLNLVQTALRQQEKIERYQADLE 358

Query: 188 SLNT--EKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALN------ 239
            L    E+    VE A   Q+ + A    AEL  EV ++K QL   ++ ++AL+      
Sbjct: 359 ELTIRLEEQNEVVEEANERQEENEARAEAAEL--EVDELKSQL---ADYQQALDVQQTRA 413

Query: 240 LEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAE--------LKQKLSIAGELE 291
           ++YQ A++ ++ A+E+     L A+S   + LE      E        L+QK+S+A    
Sbjct: 414 IQYQQAIAALERAKELCHLPDLTADSA-EEWLETFQAKEEEATEKLLSLEQKMSMAQAAH 472

Query: 292 AELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLR 351
           ++     +        L++     L R E  +   E LR   DQ +     L ++++ LR
Sbjct: 473 SQFEQAYQ--------LVVAIAGELARSEAWDVARELLREGPDQRH-----LAEQVQPLR 519

Query: 352 GKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESS 411
            ++S +EQ+L   +Q    L  +      + +   L   E+    Q+ + LI+ L    S
Sbjct: 520 MRLSELEQRLR-QQQSAERLLADFC----KRQGKNLDAEELEALHQELEALIESLSDSVS 574

Query: 412 QLKEK---MVEKEREVSSLVEMHEVRGNETLAQIKELQ--AQVTGLELE-LESLQAHNRD 465
             +E+   + +++ ++ S ++    R    LA    L+  ++ +G E    + +  + + 
Sbjct: 575 NAREQRMALRQEQEQLQSRIQSLMQRAPVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQ 634

Query: 466 MVVQIDSKAAAAKQLEEENLQLQARISDL 494
           ++ +         +L      L   I  L
Sbjct: 635 LLEREREATVERDELGARKNALDEEIERL 663

Length = 1480

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 45.4 bits (107), Expect = 9e-05
 Identities = 69/362 (19%), Positives = 137/362 (37%), Gaps = 35/362 (9%)

Query: 49  LQEKDGIKEPLVELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYSSSSSDSDSDS 108
           L+ +D  +    EL  GF      +     NL+ +        +E    S        + 
Sbjct: 245 LKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLR-EK 303

Query: 109 DHSSKNKSNKNGELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSA 168
             + K+ SNK       Y+   + MKQ+      ++ +LK  +    EE +AL       
Sbjct: 304 WRALKSDSNK-------YENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQ-SNIDE 355

Query: 169 LSRIQEAGELIRNLKLEAESLNTEKLKLTV-ENAELNQKLDAAGKIEAELNREVSDMKRQ 227
           L +            L  + ++TE+ +L   E  +L ++LD       +L + V   K +
Sbjct: 356 LHKQ-----------LRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLE 404

Query: 228 LTARSEEKEALNLEYQTALSKIQEAEEIIRN------LKLEAESLN--NDMLEGLAVNAE 279
                +  E    +Y + +  I  +   I +      LK+  E L      +      + 
Sbjct: 405 AQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSI 464

Query: 280 LKQKLSIAGELEAELNH--RLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLN 337
           L+    I   ++ E N    LE+  ++  + I E   +L ++E     A      + + N
Sbjct: 465 LELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEEN 524

Query: 338 EEKLVLGK-ELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEF 396
           E +LV  + E+E L  +++++      SK  + D  Q + +TE +   L + ++    + 
Sbjct: 525 ERELVAQRIEIEKLEKELNDLNL---LSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKI 581

Query: 397 QQ 398
            +
Sbjct: 582 HK 583

Length = 622

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 86/458 (18%), Positives = 180/458 (39%), Gaps = 25/458 (5%)

Query: 143 EVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAE 202
           ++ E KR +   S E+  L  + +     +    E +         L  +  K   E  +
Sbjct: 244 QLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANAEIQQ 303

Query: 203 LNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLE 262
              K ++ G + AE   E+ ++K++L  +  E E      + A +K    E+    L+ E
Sbjct: 304 WRSKFESEGALRAE---ELEELKKKLNQKISELEE---AAEAANAKCDSLEKTKSRLQSE 357

Query: 263 AESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEG 322
            E L  ++    A  +EL++K     ++ AE   ++++       L  E +T  R     
Sbjct: 358 LEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDE-------LQAELDTAQREARNL 410

Query: 323 EKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEEN 382
                 L+N  ++L ++   L +E + L+ +I ++  QL    + V +L +     E E 
Sbjct: 411 STELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEK 470

Query: 383 KSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKM----VEKEREVSSLVEMHEVRGNET 438
             L   + E     +  ++ +     E SQ++ ++     EKE E  +  + H+      
Sbjct: 471 DELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRKNHQRAIESL 530

Query: 439 LAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLT 498
            A ++             + L+    ++ + +D    A  + ++   + Q ++ +L+   
Sbjct: 531 QATLEAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQV 590

Query: 499 KERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEA 558
               +E            + +  R   L A++ +L + L+     + + E  +     EA
Sbjct: 591 ----EEEQRAREDAREQLAVAERRATALEAELEELRSALEQAERARKQAETEL----AEA 642

Query: 559 STQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTRE 596
           S +V  L  Q  +L  +   L G+ A L+  L+E   E
Sbjct: 643 SERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNE 680

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 111/474 (23%), Positives = 202/474 (42%), Gaps = 55/474 (11%)

Query: 201 AELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALN--LEYQTALSKIQEAEEIIRN 258
            EL ++L+A     A+  +  +D+ R+L   SE  E        Q  L+K +EAE     
Sbjct: 49  RELEEELEAERAARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLR 108

Query: 259 LKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRR 318
             LE  +L ++        A L++K   A     EL+ ++E + + K     EK  +   
Sbjct: 109 KDLEEANLQHE-----EALATLRKKHQDA---INELSEQIEQLQKQKAKAEKEKSQLQAE 160

Query: 319 VEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTAT 378
           V+       DL    DQ+ + KL   K+ + L  ++S ++ +L+  +++++DL+   +  
Sbjct: 161 VD-------DLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRL 213

Query: 379 EEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNET 438
           + EN  LT ++ E   +      L   L ++  + K  + E+ RE ++            
Sbjct: 214 QSENSDLTRQLEEAEAQVSNLSKLKSQLESQLEEAKRSLEEESRERAN------------ 261

Query: 439 LAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLT 498
                 LQAQ+  LE +L+SL+    +   + ++KA   +QL + N ++Q   S  E   
Sbjct: 262 ------LQAQLRQLEHDLDSLREQLEE---ESEAKAELERQLSKANAEIQQWRSKFESEG 312

Query: 499 KERGDELTTTIMKLEANESESLSRIE--------------NLTAQINDLLADLDSLHNEK 544
             R +EL     KL    SE     E               L +++ DL  +L+  +   
Sbjct: 313 ALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAA 372

Query: 545 SKLEEHMVFKD---DEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYI 601
           S+LE+     D    E   +V  L  ++DT Q+E  +L  +   L+ +LEE   ++    
Sbjct: 373 SELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLSTELFRLKNELEELKDQVEALR 432

Query: 602 IEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRL 655
            E + L++EI + T+   +    +  L    + LE E   L     + E  + L
Sbjct: 433 RENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALEL 486

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 50/261 (19%), Positives = 105/261 (40%), Gaps = 30/261 (11%)

Query: 270 MLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDL 329
           +L G+ ++A     L +          +L+DI       +    T L   +  ++ AE  
Sbjct: 48  VLTGMLISAATLAILFLLNRNLRSGVFQLDDIRPQ----LRALRTELGTAQGEKRAAETE 103

Query: 330 RNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKI 389
           R +A            EL+  R +   + Q+L +++Q ++   Q L    ++ + L  ++
Sbjct: 104 REAARS----------ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRL 153

Query: 390 SEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQV 449
             ++ + +Q +   Q L A   QL+    + + +V  L    ++R  +   + + L  + 
Sbjct: 154 KTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDL----KLRSAQIEQEAQNLATRA 209

Query: 450 TGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTI 509
              +   E L             +AAAA+Q  +   Q  A+IS        R +++    
Sbjct: 210 NAAQARTEELA-----------RRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERE 258

Query: 510 MKLEANESESLSRIENLTAQI 530
            +L+  E+   +R+E   AQ+
Sbjct: 259 RQLQRLETA-QARLEQEVAQL 278

Length = 499

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 70/342 (20%), Positives = 151/342 (44%), Gaps = 45/342 (13%)

Query: 329 LRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLK 388
           L+N  +    E+  L K+   L G +S+M  ++E  +  +   ++     EE++K     
Sbjct: 141 LQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSS 200

Query: 389 ISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNE-TLAQIKELQA 447
              MS E          L+A+ ++ +++++E E+++ +L +  + + N+  L   ++++A
Sbjct: 201 SESMSAERNA-------LLAQRAENQQRILELEQDIQTLTQ--KKQENDRVLEGTQDIEA 251

Query: 448 QVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTT 507
           +   LE     L+   + M +Q   +      L+ EN QL   +  L+   +    +   
Sbjct: 252 E---LERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLE--SSQQKA 306

Query: 508 TIMKLEANESESL----------SRIENLTAQINDLLADLDSLH---------NEKSKLE 548
            ++  E     SL          SR+E  +AQ++  L+ L +L           E+  L 
Sbjct: 307 GLLGEELASLGSLRDHTIAELHQSRLE--SAQMSLQLSQL-NLALKEGQSQWAQERETLR 363

Query: 549 EHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKT----REISEYIIEV 604
           +      D    +++ L  ++  L++ L+  R Q+  LEV+L  +      ++SE   E+
Sbjct: 364 QSAEADKD----RIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENRREL 419

Query: 605 QILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQK 646
             L+  +    + ++++ EE + L   I+ LEL +    ++K
Sbjct: 420 SELRSALRVLQKEKEQLQEEKQELLDYIRVLELRLDKEADEK 461

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 54/211 (25%), Positives = 88/211 (41%), Gaps = 31/211 (14%)

Query: 505 LTTTIMKLEA-------NESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDE 557
           L   I KL+A       NESE  ++I  LT+    L +DL  L  E   L+  +    + 
Sbjct: 411 LEQDIKKLQAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKL----NS 466

Query: 558 ASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEV 617
             +  +     + ++++ L+S    +   E QL E+ +   E         EE       
Sbjct: 467 MVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKE---------EEETAARAA 517

Query: 618 QQKI---LEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGI 674
            Q      E  ESL    + LE+E+         LE  ++LK EE   + E++   L   
Sbjct: 518 AQAAASREECAESLKQAKQDLEMEI-------KKLEHDLKLK-EEECRMLEKEAQELRKY 569

Query: 675 FELEKTLTERGSELSSLQEKHINVENKASAQ 705
            E EK      S L ++Q+K++ +EN  SA+
Sbjct: 570 QESEKETEVLMSALQAMQDKNLMLENSLSAE 600

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 21/176 (11%)

Query: 250 QEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLI 309
           + A+ II   K EAE+L  + L  L    E+ +  +   ELE EL  R  ++ R +  L+
Sbjct: 32  ELAKRIIEEAKKEAETLKKEAL--LEAKEEVHKLRA---ELERELKERRNELQRLERRLL 86

Query: 310 MEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVS 369
             +ET+ R++E  +K  E+L     +L+ ++    K L+    ++  +  +     + +S
Sbjct: 87  QREETLDRKMESLDKKEENLEKKEKELSNKE----KNLDEKEEELEELIAEQREELERIS 142

Query: 370 DLSQNLTATEEENKSLTLKISEMSNEFQQ-AQNLIQDLMAESSQLKEKMVEKEREV 424
            L+Q      EE K + L+  E+  E +  A  LI+++  E    KE+  +K +E+
Sbjct: 143 GLTQ------EEAKEILLE--EVEEEARHEAAKLIKEIEEE---AKEEADKKAKEI 187

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 45/314 (14%), Positives = 110/314 (35%), Gaps = 8/314 (2%)

Query: 289 ELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELE 348
             E EL    E      +  I   +T    + E  + A  +      L E+   L  +  
Sbjct: 253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSN 312

Query: 349 TLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQD--- 405
                ++ M+Q+ +    ++  L   +   EEE K+L   I E+  + ++     +    
Sbjct: 313 KYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFEL 372

Query: 406 LMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRD 465
           +  E  +L  ++ +   +   L +  + R  E     K L+  +   +  ++++      
Sbjct: 373 MNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQ 432

Query: 466 MVVQID--SKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRI 523
           +   ++  S     +QL  +   +   I    +   +   E   T         E +  +
Sbjct: 433 IGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNL 492

Query: 524 ENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQK 583
           ++   ++  +L  L+   +E +   E      +E   ++     +++ L++EL  L    
Sbjct: 493 KHDINELTQILEKLELELSEANSKFE---LSKEENERELVAQRIEIEKLEKELNDLNLLS 549

Query: 584 AVLEVQLEEKTREI 597
               +  E+  +  
Sbjct: 550 KTSILDAEQLVQST 563

Length = 622

>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 31/211 (14%), Positives = 82/211 (38%), Gaps = 30/211 (14%)

Query: 366 QEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVS 425
              +++ Q L  +  E   LT + +++    Q  Q  +     E +   E   E+    +
Sbjct: 3   LAGNNVLQELLQSRRE--LLTAESAQLEAALQLLQEAVNSKRQEEA---EPAAEEAELQA 57

Query: 426 SLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENL 485
            L++       + LA   +L   +      L +L + +R +   +     +++ + E+  
Sbjct: 58  ELIQ-------QELAINDQLSQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIA 110

Query: 486 QLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKS 545
            L+  +    +L ++ G             E+        +T + + L A+   ++    
Sbjct: 111 VLRGSLLLSRILLQQLGP----------LPEAGQPQEQFEVTQERDALQAEKAYIN---- 156

Query: 546 KLEEHMVFKDDEASTQVKGLMNQVDTLQQEL 576
            LE     + ++ + +V+ +++Q+   ++EL
Sbjct: 157 ALEG----QAEQLTAEVRDILDQILDTRREL 183

Length = 835

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 83/449 (18%), Positives = 168/449 (37%), Gaps = 82/449 (18%)

Query: 164  EYQSALSRIQEAGELIRNLKLEAE------------------SLNT-----------EKL 194
             Y  AL RI++   +    +L                      L +            KL
Sbjct: 763  RYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKL 822

Query: 195  KLTVENAE-LNQKLDAAGKIEAE--LNREVSDMKRQLTARSEEKEALNLEYQTALSKIQE 251
            + T++  + L +  +    ++AE  + +    +K +      +KE + L+      +++ 
Sbjct: 823  QKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQ---RVEL 879

Query: 252  AEEIIRNLKLEAESLNNDMLEGLAVNAELKQKL-----SIAGELEAELNHRLEDISRDKD 306
            AE  ++ LK++ +S+++  L    VN EL+ ++     S++ +L   L  + E I+R K 
Sbjct: 880  AERQLQELKIDVKSISSLKL----VNLELESEIIELKKSLSSDLIENLEFKTELIARLKK 935

Query: 307  NL--IMEKETVLRRVEEGEKIAEDL--RNSADQLNEEKLVLGKELETLRGKISNMEQQLE 362
             L  I  +E       +  ++ +     +   + +EE   L K+   L  + +    +L+
Sbjct: 936  LLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELK 995

Query: 363  SSKQEVSDLSQNLTATEEENKSL-------------TLKISEMSNEFQQ---AQNLIQDL 406
            + K+E+++LS+   A +E  K L             +  IS  S E       Q L   L
Sbjct: 996  NFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLL 1055

Query: 407  MAESSQLKEKMVE----KEREVSSLVE---MHEVRGNETLAQIKELQAQVTGLELELESL 459
            + E++QL+ +       +E  +    +   +           +K+L+     L      L
Sbjct: 1056 LLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVL 1115

Query: 460  QAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESES 519
            Q     M      K    +++ +   QL   +    +  K    +L    +  EAN    
Sbjct: 1116 QFIVAQM-----IKLNLLQEISKFLSQLVNTLEP--VFQKLSVLQLELDGLFWEANLEAL 1168

Query: 520  LSRI-ENLTAQINDLLADLDSLHNEKSKL 547
             S       ++         +L++EKSKL
Sbjct: 1169 PSPPPFAALSEKRLY---QSALYDEKSKL 1194

Length = 1463

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 15/220 (6%)

Query: 511 KLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEH--------------MVFKDD 556
           + E     +   +E L   + +L   L+ L  +  K E +              ++ K  
Sbjct: 176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLK 235

Query: 557 EASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTE 616
           E   +++ L  ++  L++ELE L+ +    E ++EE   E+ E   E++ L+EE++   E
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKE 295

Query: 617 VQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFE 676
             +++  EI  L  R++ LE E+  L  +  +L+E++    EE          L   + E
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 677 LEKTLTERGSELSSLQEKHIN-VENKASAQITAMAAQASL 715
           LE+   E   +LS+L E+     E          A  A +
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEI 395

Length = 1163

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 38/237 (16%), Positives = 87/237 (36%), Gaps = 29/237 (12%)

Query: 432 EVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARI 491
           + +  +   +I  L+ ++   + +   L+   + +  +I S  A   +  ++  +L+ +I
Sbjct: 37  DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96

Query: 492 SDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHM 551
           +DL              +  LE  E E   +   L  Q+    A   S  N    L   +
Sbjct: 97  ADLN-----------ARLNALEVQERE---QRRRLAEQLA---ALQRSGRNPPPAL---L 136

Query: 552 VFKDDEASTQ---------VKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYII 602
           V  +D   +                ++D L+  L+ L   +A +  +  E T  +SE   
Sbjct: 137 VSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRA 196

Query: 603 EVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEE 659
           +   L + +  + +   ++  E+ +   +++ L    + L N+ +  E       E 
Sbjct: 197 QQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREA 253

Length = 420

>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 47/260 (18%), Positives = 114/260 (43%), Gaps = 20/260 (7%)

Query: 416 KMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQ----AHNRDMVVQID 471
           K+VE   ++S L EM ++       +I+EL  Q+  L+++++ +Q     +N+++  Q  
Sbjct: 154 KLVEDLLDISVLSEMDKLNK----DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRK 209

Query: 472 SKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQIN 531
                  + + +  +L      ++   +E  DEL   +M +E + S +L+++    A+I 
Sbjct: 210 KNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE-DPSAALNKLNTAAAKIK 268

Query: 532 DLLADLDSLHNEKSKLEEHMVFKD-----DEASTQVKGLMNQVDTLQQELESL---RGQK 583
              + ++         E+  V         E   ++  + +++  LQ  LE L     + 
Sbjct: 269 ---SKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDEL 325

Query: 584 AVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLG 643
             +  +  E+++++ E   ++   K+ ++   +  +K+   IE L A       E+A L 
Sbjct: 326 EEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ 385

Query: 644 NQKSDLEEQMRLKIEEGFHL 663
           ++   + +     ++E +H 
Sbjct: 386 DELDKIVKTKSELVKEKYHR 405

Length = 562

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 93/494 (18%), Positives = 203/494 (41%), Gaps = 50/494 (10%)

Query: 195 KLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEE 254
              ++ AEL +      ++E EL ++  + KR       +   L   Y+  L +  E E 
Sbjct: 55  MTLLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEV 114

Query: 255 IIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKET 314
            ++ L+   +   N+  E       LK KL        +L +  ED  ++    I     
Sbjct: 115 RLKALEELEKKAENEAAEAEEEAKLLKDKLDAE---SLKLQNEKEDQLKEAKESIS---R 168

Query: 315 VLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQN 374
           +   + E +  A++       L  E   L ++LE  + +++  E++L+S   E +  + N
Sbjct: 169 IKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADN 228

Query: 375 LTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHE-- 432
                 + K L  ++     + +  +++ + L+      +E       E   L  M E  
Sbjct: 229 ----SVKIKHLEEELKRYEQDAEVVKSMKEQLLQIPELERELA-ALREENRKLRSMKEDN 283

Query: 433 --------------VRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAK 478
                          R  +   ++ +L+ +   LE EL+S ++  +D+ + + +    ++
Sbjct: 284 ELLKEELEDLQSRLERFEKMREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSR 343

Query: 479 QLEE---ENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLA 535
           ++     E LQL+ +   +    K+    L TT+ +L+    +++S I  L  ++  L A
Sbjct: 344 RIVVLQNEELQLKEKNGSISSSAKQ----LETTLQQLQLERQKAVSEILELKKKLEALKA 399

Query: 536 DLDSLHNEKSKLEEHM--------VFKDDEASTQVKG-LMNQVDTLQQELESLRGQKAVL 586
            +  L    + + +           +  +   T V G LM +++  +  ++ ++   A +
Sbjct: 400 LVRRLQRRLTLVTKERDGLRAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLAKM 459

Query: 587 EVQLEEKTREISEY-------IIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEV 639
           E QL E   ++ +          E+++LKE++V+   +   + E   +L  +I++LE E 
Sbjct: 460 ENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNALRLKIETLERER 519

Query: 640 ASLGNQKSDLEEQM 653
             L  +KS LE ++
Sbjct: 520 DRLRQEKSLLEMKL 533

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 5/153 (3%)

Query: 512 LEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEAS---TQVKGLMNQ 568
           +  N  +SL  I+ L  + + L   +  +     K +  +   +        +++ L NQ
Sbjct: 1   MMNNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQ 60

Query: 569 VDTLQQELESLRGQKAVLEVQLEEKT--REISEYIIEVQILKEEIVNKTEVQQKILEEIE 626
           V  L+ E++ +R +    E +L      RE+    IE+QI KE I +  +   +++EEIE
Sbjct: 61  VSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIE 120

Query: 627 SLTARIKSLELEVASLGNQKSDLEEQMRLKIEE 659
            L   I+ L+  +  L    ++ E ++  ++ E
Sbjct: 121 KLEKEIEDLKERLERLEKNLAEAEARLEEEVAE 153

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 54/259 (20%), Positives = 99/259 (38%), Gaps = 21/259 (8%)

Query: 474 AAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESES---LSRIENLTAQI 530
               + +E  +L +  +   LE L +ER        +  E  E E    L   E L  Q 
Sbjct: 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQK 239

Query: 531 NDLLADLDSLHNEKSKLE----------EHMVFKDDEASTQVKGLM-NQVDTLQQELESL 579
             +   L SL  E  KL           E +    +E + ++K L   +   +++++  L
Sbjct: 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGEL 299

Query: 580 RGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIE-------SLTARI 632
             + A LE  + EK RE+ +    +  L+ EI       +++  EIE        LT   
Sbjct: 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359

Query: 633 KSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQ 692
             L+ E+  L  +  +++++     +E     E+   L   I EL++ L     EL  L 
Sbjct: 360 AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLS 419

Query: 693 EKHINVENKASAQITAMAA 711
           E+  ++    +     +  
Sbjct: 420 EELADLNAAIAGIEAKINE 438

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 64/315 (20%), Positives = 118/315 (37%), Gaps = 9/315 (2%)

Query: 21  EKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKEPLVELIEGFHSQYQSL---YAQY 77
           E+ + L   K E E       K   ++  +  +     L E +E    +   L     + 
Sbjct: 211 ERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEI 270

Query: 78  DNLRGELKKKIHGKKENETYSSSSSDSDSDSDHSSKNKSNKNGELESEYQKTTDGMKQEL 137
           + L  EL KKI    E E         + +++ +S  +S       +E ++  +  ++ L
Sbjct: 271 EQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS------IAEKERELEDAEERL 324

Query: 138 DAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLT 197
                E+ +L   +     E E              E  E + +L+ E E ++ E  +  
Sbjct: 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384

Query: 198 VENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIR 257
            E  +  +KL+   +   EL RE+  ++ +L   SEE   LN       +KI E EE   
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 258 NLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLR 317
           +  LE +     + +  A  ++ +Q+L    E    +   L  + R+      +      
Sbjct: 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504

Query: 318 RVEEGEKIAEDLRNS 332
           RV  G  + E L+ S
Sbjct: 505 RVRGGRAVEEVLKAS 519

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 95/552 (17%), Positives = 201/552 (36%), Gaps = 43/552 (7%)

Query: 168 ALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQ 227
           AL  IQ+    I  L+ + E L + +L+L      L+ +L A  +  AE   E  + K +
Sbjct: 237 ALRAIQKVAPEIEKLQEDFEQLLSLELRLQH----LHGELVADEERLAEEQEERQEAKNR 292

Query: 228 L-TARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAE-LKQKLS 285
           L       ++ L         ++  A   +   + E E L +        + E L+  L 
Sbjct: 293 LRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLD 352

Query: 286 IAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQ--LNEEKLVL 343
               + +EL      +     + +  K   ++R  E  K     +   D    NE    +
Sbjct: 353 QLPSIRSELEEVEARL-----DALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAI 407

Query: 344 GKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLI 403
            +E +  +  I    Q LES  Q    L        EE   L L++              
Sbjct: 408 REEKDRQKAAIEEDLQALES--QLRQQLEAGKLEFNEEEYELELRLGR------------ 453

Query: 404 QDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHN 463
                +S+    + +E+       +E  +    +  A +++LQ+++  L    +      
Sbjct: 454 LKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEAL 513

Query: 464 RDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRI 523
           +    ++     A  +LE +        S L  L  E       +I K+ +   E L R 
Sbjct: 514 QRAERRLLQLRQALDELELQLSPQAG--SLLHFLRNEAPG-WEESIGKVIS--PELLERT 568

Query: 524 ----ENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESL 579
               + +    +D L  + SL  ++  + ++    + E   +++     + +   + +  
Sbjct: 569 DLDPQLVEGSDSDTLYGV-SLDLQRLDVPDY-AANETELRERLQQAEEALQSAVAKQKQA 626

Query: 580 RGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIE-SLTARIKSLELE 638
             Q      +LEE+ R  +E    ++  + ++      QQ + +++E ++  R +  E +
Sbjct: 627 EEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQ 686

Query: 639 VASLGNQKSDLEEQMRLKIEEGFHLTEEKLGL-LDGIFELEKTLTERGSELSSLQEKHIN 697
           +  L  Q   L EQ +  +E    L ++   L  + + + +    E  ++L+ L      
Sbjct: 687 LRQLDAQLKQLLEQQQAFLE---ALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEA 743

Query: 698 VENKASAQITAM 709
              +A A++  +
Sbjct: 744 ARTQAKARLKEL 755

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 35/218 (16%), Positives = 83/218 (38%), Gaps = 26/218 (11%)

Query: 437 ETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEM 496
             + Q+ +++ Q+  L  EL + Q   R    + ++  +  ++  +E   ++  ++    
Sbjct: 71  SGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQ 130

Query: 497 LTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDD 556
              +   EL     +L     +  +R++ L  Q   L A   SL   + +L+        
Sbjct: 131 NLAKAQQELA----RLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ-------- 178

Query: 557 EASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTE 616
                      Q+ +   +L  LR  +       E++ + ++      Q   EE+  +  
Sbjct: 179 -------ASATQLKSQVLDL-KLRSAQI------EQEAQNLATRANAAQARTEELARRAA 224

Query: 617 VQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMR 654
             Q+  + I+   A+I     ++A+   Q  + E Q++
Sbjct: 225 AAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQ 262

Length = 499

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 21/83 (25%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 345 KELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQ 404
           +EL  L+ +++ +++QL   +QE  +L Q L+  E E + L  +++ +    +Q      
Sbjct: 73  QELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARI----KQLSANAI 128

Query: 405 DLMAESSQLKEKMVEKEREVSSL 427
           +L  E+ +L+E++ E ++E  +L
Sbjct: 129 ELDEENRELREELAELKQENEAL 151

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 36/149 (24%), Positives = 68/149 (45%)

Query: 556 DEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKT 615
                ++K L  ++  L+ +LE L  +   L+ +L      + E   +++ L+ ++    
Sbjct: 663 LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK 722

Query: 616 EVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIF 675
                + EE+E L +R++ LE E+  L  +  +L+E++    EE   L E    L + I 
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782

Query: 676 ELEKTLTERGSELSSLQEKHINVENKASA 704
           ELE+       EL  L+E+    E +  A
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDA 811

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 83/425 (19%), Positives = 172/425 (40%), Gaps = 39/425 (9%)

Query: 152 TATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAG 211
            A    +E L    +    R++E     +    EAESL  +   L     EL ++     
Sbjct: 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369

Query: 212 KIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDML 271
               E    V D + ++    EE E L   +  A   +  AE+ +  L+ E + L     
Sbjct: 370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429

Query: 272 EGLAVNAELKQKLSIAGELEA---------------------ELNHRLEDISRDKDNLIM 310
           E  A     ++++  A  L                       E   R+E++  + ++L  
Sbjct: 430 ELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEE 489

Query: 311 EKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSD 370
           E E V  R+E  E + E   +  ++L E +  L + +   R  I    ++ E  ++  ++
Sbjct: 490 EVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548

Query: 371 LSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEM 430
           L        E         +E   E ++A+  + +L ++ ++LKE++   ER  + L  +
Sbjct: 549 LEAEAEEKREA-------AAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAI 601

Query: 431 HEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSK-----AAAAKQLEEENL 485
            +    + + +++E +  +  L  E     A  R+   +++++        A++ +E   
Sbjct: 602 ADAE--DEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAE 659

Query: 486 QLQARISD-LEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEK 544
           +   ++ + L+ L +ER D+L   I  +E NE E L  +      + + +  L++L++E 
Sbjct: 660 EYLEQVEEKLDELREER-DDLQAEIGAVE-NELEELEELRERREALENRVEALEALYDEA 717

Query: 545 SKLEE 549
            +LE 
Sbjct: 718 EELES 722

Length = 880

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 10/188 (5%)

Query: 83  ELKKKIHGKKENETYSSSSSDSDSDSDHSSKNKSNKNGELESEYQKTTDGMKQELDAATL 142
           EL  K     E       S       +   K    +   L    ++  +   Q+L+    
Sbjct: 289 ELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEILEKNLQKLEEKLK 348

Query: 143 EVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAE 202
           + S     + + ++  E++N    +    I+E  E I NLK E      +KL L    AE
Sbjct: 349 DPS-TSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKNKA-KKKLWLH-LVAE 405

Query: 203 LNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLE 262
           L + +DA  K +  L + ++ +++++     E +AL  E       I+E E+ + N++  
Sbjct: 406 LKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKE-------IKELEKQLTNIEPT 458

Query: 263 AESLNNDM 270
           A+ +N  +
Sbjct: 459 ADEINKLL 466

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 30/148 (20%), Positives = 65/148 (43%), Gaps = 17/148 (11%)

Query: 350 LRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNL---IQDL 406
           L  +IS  +  L+    ++++L+  L+   + N+ L   ++ +      A+     +Q L
Sbjct: 44  LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103

Query: 407 MAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDM 466
           +AE +        +  E++  ++  +      LAQ++ L  Q+  L  +L +L+      
Sbjct: 104 LAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE------ 157

Query: 467 VVQIDSKAAAAKQLEEENLQLQARISDL 494
                   AA    E+ + + QA+I+DL
Sbjct: 158 --------AALDASEKRDRESQAKIADL 177

Length = 343

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.9 bits (95), Expect = 0.003
 Identities = 69/355 (19%), Positives = 141/355 (39%), Gaps = 19/355 (5%)

Query: 83   ELKKKIHGKKENETYSSSSSDSDSDSDHSSKNKSNKNGE---LESEYQKTTDGMKQELDA 139
            E KKK    K+ +     + ++    +   K +  K  +    ++E  K  D  K++ + 
Sbjct: 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494

Query: 140  ATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIR--NLKLEAESLNTEKLKLT 197
            A  +  E K+   A  +  EA   E        ++A E  +    K   E    ++LK  
Sbjct: 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554

Query: 198  VENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIR 257
             E  +  +K  A    +AE ++ ++  K +   ++EE     +       K  +AEE   
Sbjct: 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE--- 1611

Query: 258  NLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLR 317
                +         E L    E K+K+    + EAE   + E++ + ++   ++     +
Sbjct: 1612 ---AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668

Query: 318  RVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTA 377
            + EE +K AE+ + + +   +    L KE E  +       ++L+  + E    ++ L  
Sbjct: 1669 KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-----KAEELKKKEAEEKKKAEELKK 1723

Query: 378  TEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHE 432
             EEENK   +K  E   E ++ +   ++   +  + K+    K+ E     E+ +
Sbjct: 1724 AEEENK---IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 108/496 (21%), Positives = 215/496 (43%), Gaps = 39/496 (7%)

Query: 175 AGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEE 234
            GE+I+ +K   E L     K       + + +    K   E+ RE++++  +L    EE
Sbjct: 167 LGEVIKEIKRRIERLE----KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREE 222

Query: 235 KEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAEL 294
            E L  E +    +++E +E I  L+ E ESL            +L++K+    E   EL
Sbjct: 223 LEKLEKEVK----ELEELKEEIEELEKELESLEGSK-------RKLEEKIRELEERIEEL 271

Query: 295 NHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKI 354
              +E++         EK   L+ ++E  +    L    ++  +E   + K L  L  +I
Sbjct: 272 KKEIEELE--------EKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323

Query: 355 SNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLK 414
           + +E++++    E+ +  + L   +++ K L  ++ E+  E  +     +    E  +LK
Sbjct: 324 NGIEERIK----ELEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLK 378

Query: 415 EKMVEKERE-VSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQ--------AHNRD 465
           +++     E +   +E  E    E   +I ++ A++  L+ E++ L+        A  + 
Sbjct: 379 KRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438

Query: 466 MVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEA--NESESLSRI 523
            V   +      K+L EE      RI       +E+  +L   + +LE    +   L ++
Sbjct: 439 PVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKL 498

Query: 524 ENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQK 583
           + L  Q+ +L   L   + E+ + +     K  E   ++KG +  +    ++LE L+ + 
Sbjct: 499 KELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558

Query: 584 AVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLG 643
           A LE +L+E   E++E + E++ L  E V + E + K LE   +    +K  E E+    
Sbjct: 559 AELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREE 618

Query: 644 NQKSDLEEQMRLKIEE 659
            +   LEE++    EE
Sbjct: 619 KELKKLEEELDKAFEE 634

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 81/378 (21%), Positives = 170/378 (44%), Gaps = 15/378 (3%)

Query: 289 ELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKE-- 346
           ELE E+N +   I R+      +    L+ +E   +   D +   ++  EE L L K+  
Sbjct: 75  ELEFEVNGKKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTF 134

Query: 347 LETLRGKISNMEQQLESSKQEVSDLSQNLTATEEE---NKSLTLKISEMSNEFQQAQNLI 403
             ++       +  L+S  +E  ++   L   E+    ++ L   I E   + ++ +  +
Sbjct: 135 TRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQL 194

Query: 404 QDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQ-IKELQAQVTGLELELESLQAH 462
            +L+ +   L E + E+ +E+  L E+ E +  E L Q I+ L+ ++  LE E E L+  
Sbjct: 195 SELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEEL 254

Query: 463 NRDM-------VVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTT--TIMKLE 513
              +       +  +  +    ++LE    +L+ +I  LE L +E  +       +  L 
Sbjct: 255 KARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALL 314

Query: 514 ANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQ 573
               E L ++++L  ++  L   L+ L +E  +L E           ++K L  +++ L+
Sbjct: 315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELE 374

Query: 574 QELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIK 633
           +ELE    +   LE  ++E   E++E    ++ ++EE+    +  +++  E+E L   IK
Sbjct: 375 KELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK 434

Query: 634 SLELEVASLGNQKSDLEE 651
            LE ++  L +++  + E
Sbjct: 435 KLEEQINQLESKELMIAE 452

Length = 908

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 40.4 bits (94), Expect = 0.004
 Identities = 67/335 (20%), Positives = 141/335 (42%), Gaps = 66/335 (19%)

Query: 353 KISNMEQQLESSKQEVSDLSQ---------------------NLTATEEENKSLTLKISE 391
           K + ++ QLE  ++E +DL +                      L  + E+ + L  +  E
Sbjct: 137 KATILQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKE 196

Query: 392 MSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNE-TLAQIKELQAQVT 450
             +  +        L+A+ ++ +++++E E+++ +L +  + + N+  L   ++++A+  
Sbjct: 197 AQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQ--KKQENDRVLEGTQDIEAE-- 252

Query: 451 GLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIM 510
            LE     L+   + M +Q   +      L+ EN QL   +  L+   +    +    ++
Sbjct: 253 -LERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQERLE--SSQQKAGLL 309

Query: 511 KLEANESESL----------SRIENLTAQINDLLADLDSLH---------NEKSKLEEHM 551
             E     SL          SR+E  +AQ++  L+ L +L           E+  L +  
Sbjct: 310 GEELASLGSLRDHTIAELHQSRLE--SAQMSLQLSQL-NLALKEGQSQWAQERETLRQSA 366

Query: 552 VFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLE-----------VQLEEKTREISEY 600
               D    +++ L  ++  L++ L+  R Q+  LE           VQL E  RE+SE 
Sbjct: 367 EADKD----RIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENRRELSEL 422

Query: 601 IIEVQILKEEIVNKTEVQQKILEEIESLTARIKSL 635
              +++L++E     E +Q++L+ I  L  R+   
Sbjct: 423 RSALRVLQKEKEQLQEEKQELLDYIRVLELRLDKE 457

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 53/307 (17%), Positives = 130/307 (42%), Gaps = 15/307 (4%)

Query: 247 SKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKD 306
           ++++  +    +L  +  +L  D+ +  +   +L+  L  + E   EL  + ++     +
Sbjct: 143 NQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSE 202

Query: 307 NLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQ 366
           ++  E+  +L +  E ++   +L      L ++K    + LE  +   + +E+     KQ
Sbjct: 203 SMSAERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQ 262

Query: 367 EVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSS 426
            +  ++      E E   L L+  ++  + +  Q        ESSQ K  ++ +E     
Sbjct: 263 RLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQE-----RLESSQQKAGLLGEE----- 312

Query: 427 LVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEEN-- 484
           L  +  +R + T+A++ + + +   + L+L  L    ++   Q   +    +Q  E +  
Sbjct: 313 LASLGSLR-DHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKD 371

Query: 485 --LQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHN 542
              +L A +  LE   +E   +     ++L   +  +  ++     ++++L + L  L  
Sbjct: 372 RIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQK 431

Query: 543 EKSKLEE 549
           EK +L+E
Sbjct: 432 EKEQLQE 438

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 12/169 (7%)

Query: 526 LTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAV 585
           L A     LA    L   + KL E  ++KD E   ++K L+ +   L + L  ++     
Sbjct: 347 LAAAYKAYLAYKPKLEKVERKLPELGIWKDVE---RIKALVIRGYPLAEALSKVKE---- 399

Query: 586 LEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQ 645
            E +  EK     E   E+ + ++ I    E  +++ EE   L   ++ L+ E+  L ++
Sbjct: 400 -EERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESE 458

Query: 646 KSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEK 694
                 ++R K+ +   +          I  LEK L E+   +  L+ K
Sbjct: 459 LERFRREVRDKVRKDREIRA----RDRRIERLEKELEEKKKRVEELERK 503

Length = 652

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	748
PF07765	74	KIP1: KIP1-like protein; InterPro: IPR011684 This	99.97
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.96
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.96
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.95
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.89
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.87
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.85
KOG0018	1141	consensus Structural maintenance of chromosome pro	99.85
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.75
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.73
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.73
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.67
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.67
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.66
PRK02224	880	chromosome segregation protein; Provisional	99.65
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.62
PRK02224	880	chromosome segregation protein; Provisional	99.62
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.58
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.57
PRK03918	880	chromosome segregation protein; Provisional	99.53
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.53
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.5
PRK03918	880	chromosome segregation protein; Provisional	99.42
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.26
PRK01156	895	chromosome segregation protein; Provisional	99.18
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.16
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.13
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.11
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.07
PRK01156	895	chromosome segregation protein; Provisional	99.05
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	99.01
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.98
PRK04778	569	septation ring formation regulator EzrA; Provision	98.98
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.98
PRK04778	569	septation ring formation regulator EzrA; Provision	98.96
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.92
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.77
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.74
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.72
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.67
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.67
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.62
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.54
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.52
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.5
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.48
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.47
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.47
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.46
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	98.41
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.38
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.36
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.35
PRK04863	1486	mukB cell division protein MukB; Provisional	98.34
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	98.33
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.32
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	98.27
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.26
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.21
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.19
KOG0018	1141	consensus Structural maintenance of chromosome pro	98.17
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.14
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.13
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	98.05
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.93
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.88
PHA02562	562	46 endonuclease subunit; Provisional	97.88
PHA02562	562	46 endonuclease subunit; Provisional	97.85
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.85
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.85
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.84
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.79
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.79
PRK11637	428	AmiB activator; Provisional	97.78
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.77
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.75
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	97.64
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.6
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.6
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.53
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	97.52
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.49
PRK04863	1486	mukB cell division protein MukB; Provisional	97.39
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.3
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.25
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.15
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.13
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.13
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.13
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.04
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.01
PRK09039	343	hypothetical protein; Validated	97.0
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.95
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.93
COG4477	570	EzrA Negative regulator of septation ring formatio	96.91
PRK09039	343	hypothetical protein; Validated	96.89
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.84
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.8
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.8
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.76
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.66
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.66
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.61
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.58
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.56
COG4477	570	EzrA Negative regulator of septation ring formatio	96.54
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.44
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	96.43
COG4372	499	Uncharacterized protein conserved in bacteria with	96.42
COG4372	499	Uncharacterized protein conserved in bacteria with	96.38
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.35
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.32
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.3
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.19
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.03
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.03
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.03
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.99
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.9
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.89
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.79
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.69
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.6
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.5
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	95.39
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.25
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.23
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.84
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.09
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	93.8
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	93.8
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.77
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.74
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	93.56
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.52
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	93.4
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.15
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	92.95
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.42
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	92.36
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	92.28
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	92.08
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.04
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	91.87
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	91.53
KOG1937	521	consensus Uncharacterized conserved protein [Funct	91.48
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	91.48
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.43
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	91.42
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	91.32
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	90.94
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.93
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	90.74
PF13514	1111	AAA_27: AAA domain	90.67
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	90.64
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	90.39
PF06470	120	SMC_hinge: SMC proteins Flexible Hinge Domain; Int	90.26
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	89.69
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	89.46
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	89.44
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	89.36
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	89.24
PF13514	1111	AAA_27: AAA domain	88.74
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	88.3
COG4026	290	Uncharacterized protein containing TOPRIM domain,	88.19
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.12
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	87.77
KOG1937	521	consensus Uncharacterized conserved protein [Funct	87.4
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.38
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	86.11
PRK10884	206	SH3 domain-containing protein; Provisional	85.96
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	85.76
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	85.63
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	85.62
COG4026	290	Uncharacterized protein containing TOPRIM domain,	85.47
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.22
PRK15422	79	septal ring assembly protein ZapB; Provisional	84.95
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	84.89
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.85
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	83.37
PRK15422	79	septal ring assembly protein ZapB; Provisional	83.1
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	83.02
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	82.82
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	82.29
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	80.91
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	80.37

>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants

Probab=99.97  E-value=9.2e-33  Score=205.59  Aligned_cols=68  Identities=28%  Similarity=0.555  Sum_probs=66.8

Q ss_pred             cccccccCCCCCchhhhhhHHHHHHHHHHHHHhhccCch--hhhccC----hhhHHHHHHHHHHHHHHHHHHHh
Q 047747           11 KSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDL--QEKDGI----KEPLVELIEGFHSQYQSLYAQYD   78 (748)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~e~~~~~~~l~~~~~   78 (748)
                      ||||+|||+|++|+||++||+|||.+||.||+||++|||  |+||+|    ||+|+.+|++||++|++|+++||
T Consensus         1 swww~sHi~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD   74 (74)
T PF07765_consen    1 SWWWDSHISPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD   74 (74)
T ss_pred             ChhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            799999999999999999999999999999999999998  899999    99999999999999999999997

They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.96  E-value=1.3e-23  Score=254.37  Aligned_cols=542  Identities=23%  Similarity=0.297  Sum_probs=287.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 047747          136 ELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEA  215 (748)
Q Consensus       136 ~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~  215 (748)
                      .+.....++..+...+..+..+.+.+...+......+..+..++..+..++..+...+..+...+..+...++.+...+.
T Consensus       384 ~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  463 (1163)
T COG1196         384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK  463 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444444444444444444444444444455555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HH--------HHHHHHHhHHHHHhhhhhH-----
Q 047747          216 ELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQE--AEEII---RN--------LKLEAESLNNDMLEGLAVN-----  277 (748)
Q Consensus       216 ~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~--~~~~l---~~--------~~~el~~~~~~~~~ai~~~-----  277 (748)
                      .++..+..+...+..+...+......+..+......  ++..+   ..        .-.++++|+++|.+||++|     
T Consensus       464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~li~v~~~y~~Aie~alG~~l  543 (1163)
T COG1196         464 ELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNRL  543 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHHHhcCcChHHHHHHHHHccccc
Confidence            555555555555555555555555544443332211  11111   11        1239999999999999885     


Q ss_pred             ---------------HHHHHhhhHhhhHHHHHHHHHHHhHh---------------------------------hhhhhh
Q 047747          278 ---------------AELKQKLSIAGELEAELNHRLEDISR---------------------------------DKDNLI  309 (748)
Q Consensus       278 ---------------~~Lk~~~~~~gr~t~~~~l~L~~i~~---------------------------------l~~~lv  309 (748)
                                     .|||+.+  +||+|   |+||+.|++                                 ||+|+|
T Consensus       544 ~~vVV~~~~~a~~~i~~lk~~~--~gr~t---flpl~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~I  618 (1163)
T COG1196         544 QAVVVENEEVAKKAIEFLKENK--AGRAT---FLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLV  618 (1163)
T ss_pred             CCeeeCChHHHHHHHHHHhhcC--CCccc---cCchhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEE
Confidence                           8999999  99999   999999882                                 899999


Q ss_pred             HH-HHHHHHHhH---hhHHHHHHHHhhHHhHHHHHHH-hhH------------HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047747          310 ME-KETVLRRVE---EGEKIAEDLRNSADQLNEEKLV-LGK------------ELETLRGKISNMEQQLESSKQEVSDLS  372 (748)
Q Consensus       310 ~e-l~~a~~~~~---~~~~~Vt~L~~l~g~l~~~~g~-~~~------------ei~~l~~~l~~le~~l~~~~~~l~~l~  372 (748)
                      |+ ++.|.+...   .++++||    ++|+++.++|+ ||+            ++..+..++..+...+..+...+..+.
T Consensus       619 v~~l~~A~~l~~~~~~~~riVT----l~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~  694 (1163)
T COG1196         619 VDDLEQARRLARKLRIKYRIVT----LDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLK  694 (1163)
T ss_pred             ecCHHHHHHHHHhcCCCceEEe----cCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 999966663   3689999    99999999999 876            334455555666666666556666665


Q ss_pred             HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccchHHHHHHHHHHHhhH
Q 047747          373 QNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGL  452 (748)
Q Consensus       373 ~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~~~~~~~~~~e~el~~l  452 (748)
                      ..+..+...+..++..+..+..++..+...+..+..+...+...+..+..++..+..    ....+...+..++..+..+
T Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~  770 (1163)
T COG1196         695 NELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE----ELEELQERLEELEEELESL  770 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555555555544443    3333333333333333333


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Q 047747          453 ELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQIND  532 (748)
Q Consensus       453 ~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~~~~~~~~~~i~~l~~~i~~  532 (748)
                      ......+...+..+..........+..+...+...+..+..+...+.........+...+    ..+..++..+...+..
T Consensus       771 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei----~~l~~~~~~~~~~~~~  846 (1163)
T COG1196         771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI----EELEEEIEELEEKLDE  846 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            333333333333333322333333333333333333333333333222221111111111    1112222233333333


Q ss_pred             HHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          533 LLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIV  612 (748)
Q Consensus       533 l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~  612 (748)
                      +...+..+...+..+..++...    ...+..+...+..+......+...+..+...+..+...+..+...+..+.....
T Consensus       847 l~~~~~~~~~~~~~~~~~l~~~----~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  922 (1163)
T COG1196         847 LEEELEELEKELEELKEELEEL----EAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE  922 (1163)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333332222222    223333333333333333444444444444444433333333333333322222


Q ss_pred             hHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHH
Q 047747          613 NKTEVQQKILEEI--------E-SLTARIKSLELEVASLGN-------QKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFE  676 (748)
Q Consensus       613 ~~~~~~~~~~~~~--------~-~l~~~~~~l~~~l~~l~~-------e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~  676 (748)
                      .+...+......+        . .+...+..++..+..+++       +|..+.+++.++..++.++......+...|..
T Consensus       923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~ 1002 (1163)
T COG1196         923 RLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEE 1002 (1163)
T ss_pred             HHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221111111111        1 567778888888888876       88889999999999999999999999999988


Q ss_pred             HHHHHHHH-HHHhHHHHHHHhhh
Q 047747          677 LEKTLTER-GSELSSLQEKHINV  698 (748)
Q Consensus       677 le~~~~~~-~~~l~~l~~~l~~~  698 (748)
                      ++...... ...|..+...|...
T Consensus      1003 ~d~~~~~~f~~~f~~In~~F~~i 1025 (1163)
T COG1196        1003 LDKEKRERFKETFDKINENFSEI 1025 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88766555 77777777777654

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.96  E-value=1.3e-22  Score=251.96  Aligned_cols=544  Identities=22%  Similarity=0.278  Sum_probs=267.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 047747          137 LDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAE  216 (748)
Q Consensus       137 l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~  216 (748)
                      ......++..+...+..+......+...+......+..+...+..+...+..+...+..+...+..+...+..+......
T Consensus       387 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~  466 (1164)
T TIGR02169       387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK  466 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH--------HHHHHHhHHHHHhhhhhH--
Q 047747          217 LNREVSDMKRQLTARSEEKEALNLEYQTALSKI---------QEAEEIIRNL--------KLEAESLNNDMLEGLAVN--  277 (748)
Q Consensus       217 l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~---------~~~~~~l~~~--------~~el~~~~~~~~~ai~~~--  277 (748)
                      +...+..+...+..+...+..+..++..+....         ..++..+...        -.+++.|++.|..||+++  
T Consensus       467 ~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~g~~g~l~dli~v~~~y~~Aie~~lg  546 (1164)
T TIGR02169       467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAG  546 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhcCCCCceecHHHhcCcCHHHHHHHHHHhh
Confidence            444555555555555555544444443333221         1222333221        239999999999999884  


Q ss_pred             ------------------HHHHHhhhHhhhHHHHHHHHHHHhHh----------------------------------hh
Q 047747          278 ------------------AELKQKLSIAGELEAELNHRLEDISR----------------------------------DK  305 (748)
Q Consensus       278 ------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~----------------------------------l~  305 (748)
                                        .||+.++  .||+|   |+||+.|++                                  ||
T Consensus       547 ~~l~~ivv~~~~~a~~~i~~l~~~~--~gr~t---flpl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg  621 (1164)
T TIGR02169       547 NRLNNVVVEDDAVAKEAIELLKRRK--AGRAT---FLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFG  621 (1164)
T ss_pred             hhhCCEEECCHHHHHHHHHHHHhcC--CCCee---eccHhhcCCCCCCcccccCCCchHHHHHHccCcHHHHHHHHHHCC
Confidence                              7999998  99999   999986530                                  88


Q ss_pred             hhhhHH-HHHHHHHhHhhHHHHHHHHhhHHhHHHHHHH-hhHHHH-------HH--HHHHhHHHHHHHHHHHHHHHHHHh
Q 047747          306 DNLIME-KETVLRRVEEGEKIAEDLRNSADQLNEEKLV-LGKELE-------TL--RGKISNMEQQLESSKQEVSDLSQN  374 (748)
Q Consensus       306 ~~lv~e-l~~a~~~~~~~~~~Vt~L~~l~g~l~~~~g~-~~~ei~-------~l--~~~l~~le~~l~~~~~~l~~l~~~  374 (748)
                      +|+||+ ++.|...+. ++++||    ++|+++.++|+ +||...       ..  ...+..+..++..+...+..+...
T Consensus       622 ~~~v~~~l~~a~~~~~-~~~~vT----ldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~  696 (1164)
T TIGR02169       622 DTLVVEDIEAARRLMG-KYRMVT----LEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSE  696 (1164)
T ss_pred             CeEEEcCHHHHHHHhc-CCcEEE----eCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888998 999966555 778999    99999999988 765210       00  233444444455544444444444


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccchHHHHHHHHHHHhhHHH
Q 047747          375 LTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLEL  454 (748)
Q Consensus       375 l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~~~~~~~~~~e~el~~l~~  454 (748)
                      +..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..    .+......+..+...+..+..
T Consensus       697 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~----~~~~~~~el~~l~~~i~~l~~  772 (1164)
T TIGR02169       697 LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ----EIENVKSELKELEARIEELEE  772 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444443443333333333333333333333333333333222222    222222222233333333333


Q ss_pred             HHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh---HhHHHHHHHH
Q 047747          455 ELESLQAHNRDMVVQI-----DSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANE---SESLSRIENL  526 (748)
Q Consensus       455 ~~~~l~~~l~~l~~~l-----~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~~~~---~~~~~~i~~l  526 (748)
                      .+..+...+..+...+     ......+..+...+..+...+..+...+..+..++..+...+....   ..+...+..+
T Consensus       773 ~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~  852 (1164)
T TIGR02169       773 DLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI  852 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333332222211     1111222233333333333333333333333322222222221111   1112222222


Q ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          527 TAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQI  606 (748)
Q Consensus       527 ~~~i~~l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~  606 (748)
                      ...+..+...+..+...+..+...+..+    ...+..+...+..+...+..+...+..+...+......+..+...+..
T Consensus       853 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l----~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~  928 (1164)
T TIGR02169       853 EKEIENLNGKKEELEEELEELEAALRDL----ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA  928 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222333333333332222222    233333344444444444444444444444444444444444444444


Q ss_pred             HHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 047747          607 LKEEIVNKTEVQQKI------LEEIESLTARIKSLELEVASLGN-------QKSDLEEQMRLKIEEGFHLTEEKLGLLDG  673 (748)
Q Consensus       607 l~~~l~~~~~~~~~~------~~~~~~l~~~~~~l~~~l~~l~~-------e~~~l~~~~~~le~e~~~l~~~~~~l~~~  673 (748)
                      +...+..+...+...      ......+...+..+...+..+++       +|..+.+++.++..++.++......+...
T Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~ 1008 (1164)
T TIGR02169       929 LEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008 (1164)
T ss_pred             HHHHHHHhhhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443332221110      11235666777777777777764       78889999999999999999999999999


Q ss_pred             HHHHHHHHHHH-HHHhHHHHHHHhhh
Q 047747          674 IFELEKTLTER-GSELSSLQEKHINV  698 (748)
Q Consensus       674 i~~le~~~~~~-~~~l~~l~~~l~~~  698 (748)
                      +..++..+... ...|..+...|...
T Consensus      1009 i~~l~~~~~~~f~~~f~~~~~~f~~~ 1034 (1164)
T TIGR02169      1009 IEEYEKKKREVFMEAFEAINENFNEI 1034 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998776655 66677777766554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.6e-21  Score=215.55  Aligned_cols=284  Identities=16%  Similarity=0.211  Sum_probs=212.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 047747          131 DGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAA  210 (748)
Q Consensus       131 ~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~  210 (748)
                      .+++.+....+.++..+..++.....+.+....++..+........+.+..++..+......+.+....+..+...+..+
T Consensus       475 ~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~  554 (1293)
T KOG0996|consen  475 EGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSL  554 (1293)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            34455566666666667777777777777777777777777777777777788888887777777888888888888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH---H-------H--HHHHhHHHHHh
Q 047747          211 GKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQ------EAEEIIRNL---K-------L--EAESLNNDMLE  272 (748)
Q Consensus       211 ~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~------~~~~~l~~~---~-------~--el~~~~~~~~~  272 (748)
                      ..++.+...++..+......+...+..+..++.++++...      .....|.++   |       .  |||.++++|..
T Consensus       555 k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDv  634 (1293)
T KOG0996|consen  555 KQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDV  634 (1293)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchHHHH
Confidence            8888888888888888888888888888888877776422      233333332   1       1  99999999999


Q ss_pred             hhhhH-------------------HHHHHhhhHhhhHHHHHHHHHHHhHh------------------------------
Q 047747          273 GLAVN-------------------AELKQKLSIAGELEAELNHRLEDISR------------------------------  303 (748)
Q Consensus       273 ai~~~-------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~------------------------------  303 (748)
                      ||.++                   .||+..+  +||+|   |++|+.|..                              
T Consensus       635 AIsTac~~LdyiVVdt~e~aq~cI~fl~~~n--LgraT---Fi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~  709 (1293)
T KOG0996|consen  635 AISTACARLDYIVVDTIETAQECINFLKKNN--LGRAT---FIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRP  709 (1293)
T ss_pred             HHHHhccccceEEeccHHHHHHHHHHHHHcC--CCcee---EEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHH
Confidence            99885                   8999999  99999   999999982                              


Q ss_pred             -----hhhhhhHH-HHHHHHHhHh---hHHHHHHHHhhHHhHHHHHHH-hhH-----------HH---HHHHHHHhHHHH
Q 047747          304 -----DKDNLIME-KETVLRRVEE---GEKIAEDLRNSADQLNEEKLV-LGK-----------EL---ETLRGKISNMEQ  359 (748)
Q Consensus       304 -----l~~~lv~e-l~~a~~~~~~---~~~~Vt~L~~l~g~l~~~~g~-~~~-----------ei---~~l~~~l~~le~  359 (748)
                           +++||||+ ++.|.+++++   ++|+||    |+|.+++++|+ ||+           .+   ..-...+..++.
T Consensus       710 aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvT----L~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~  785 (1293)
T KOG0996|consen  710 AFYFALRDTLVADNLEQATRIAYGKDRRWRVVT----LDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLER  785 (1293)
T ss_pred             HHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEE----ecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHH
Confidence                 99999999 9999888844   488999    99999999999 753           11   112235566666


Q ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          360 QLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKERE  423 (748)
Q Consensus       360 ~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e  423 (748)
                      .+......+..+...+..+++.+..++..+..+.+.+..+...++.+...++.+..++.+++..
T Consensus       786 ~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~  849 (1293)
T KOG0996|consen  786 ALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA  849 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666667777777777777777777777777777777777776665

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=5.4e-17  Score=176.20  Aligned_cols=277  Identities=19%  Similarity=0.277  Sum_probs=177.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 047747          134 KQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKI  213 (748)
Q Consensus       134 k~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~  213 (748)
                      +.++..+..-+...+.....++.+++.+...+....+.+..+...|.....++..+...       +..++..++.+...
T Consensus       396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~-------~~~~k~~~del~~~  468 (1200)
T KOG0964|consen  396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAE-------NTELKRELDELQDK  468 (1200)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            34445555556666666667777777777777777777777777766665555555544       45555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH------------HHHHHHhHHHHHhhhhhH---
Q 047747          214 EAELNREVSDMKRQLTARSEEKEALNLEYQTALSK-IQEAEEIIRNL------------KLEAESLNNDMLEGLAVN---  277 (748)
Q Consensus       214 ~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~-~~~~~~~l~~~------------~~el~~~~~~~~~ai~~~---  277 (748)
                      ...++.+-..++..+..+...+...+..+..+..+ +..+...+...            ..+|+.||++|.+|+++.   
T Consensus       469 Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGN  548 (1200)
T KOG0964|consen  469 RKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGN  548 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhccc
Confidence            66666667777777777777777777777666554 44444444331            239999999999999882   


Q ss_pred             -----------------HHHHHhhhHhhhHHHHHHHHHHHhHh-------------------------------hhhhhh
Q 047747          278 -----------------AELKQKLSIAGELEAELNHRLEDISR-------------------------------DKDNLI  309 (748)
Q Consensus       278 -----------------~~Lk~~~~~~gr~t~~~~l~L~~i~~-------------------------------l~~~lv  309 (748)
                                       ..+..-+  .||+|   |+||+.|++                               ||+|+|
T Consensus       549 sLF~iVVdndevATkIl~~~n~m~--~GrVT---F~PLNrl~~r~v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktiv  623 (1200)
T KOG0964|consen  549 SLFNIVVDNDEVATKILRKLNKMK--GGRVT---FMPLNRLKARDVEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIV  623 (1200)
T ss_pred             ceEEEEecccHHHHHHHHHHHhcc--CCeeE---EeecccCchhhccCCCCCCccchHHHhCcchhhHHHHHHHhCceEE
Confidence                             4444555  89999   999999985                               999999


Q ss_pred             HH-HHHHHHHh-HhhHHHHHHHHhhHHhHHHHHHH-hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 047747          310 ME-KETVLRRV-EEGEKIAEDLRNSADQLNEEKLV-LGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLT  386 (748)
Q Consensus       310 ~e-l~~a~~~~-~~~~~~Vt~L~~l~g~l~~~~g~-~~~ei~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~  386 (748)
                      |. ++.|.+.+ .+...+||    ++|+.+...|+ ||+-+..-...+. +-..+...+.++..+...+..+...+.+..
T Consensus       624 crdl~qa~~~ak~~~ln~IT----l~GDqvskkG~lTgGy~D~krsrLe-~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~  698 (1200)
T KOG0964|consen  624 CRDLEQALRLAKKHELNCIT----LSGDQVSKKGVLTGGYEDQKRSRLE-LLKNVNESRSELKELQESLDEVRNEIEDID  698 (1200)
T ss_pred             eccHHHHHHHHHhcCCCeEE----eccceecccCCccccchhhhhhHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 99997777 55788999    99999999999 9876655322222 223344444444445444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047747          387 LKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSL  427 (748)
Q Consensus       387 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l  427 (748)
                      +++..+.+.++.++............+...+..+..+...+
T Consensus       699 ~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v  739 (1200)
T KOG0964|consen  699 QKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRV  739 (1200)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            44444444444444444444444444444444444433333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=7.5e-17  Score=176.00  Aligned_cols=277  Identities=14%  Similarity=0.160  Sum_probs=171.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHhhccCch---hhhccChhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccCCCCCCCCCCC
Q 047747           24 EQLKGNKIEIEDKFKKILKLVQDKDL---QEKDGIKEPLVELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYSSS  100 (748)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (748)
                      .|..+||.+-..+++.|-+=|.++--   +++.        .+......|..+++.+...+.-+.......   ++.+.+
T Consensus       318 ~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~--------~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~---eslt~G  386 (1174)
T KOG0933|consen  318 NLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEK--------AMAKVEEGYEKLKEAFQEDSKLLEKAEELV---ESLTAG  386 (1174)
T ss_pred             HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH--------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHhcc
Confidence            69999999999999999998888753   1222        223334455555555555554443332111   000111


Q ss_pred             CCCCCCCCCccccccCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          101 SSDSDSDSDHSSKNKSNKNGELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIR  180 (748)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~  180 (748)
                      .|+.|.           ..+    .+...+...+..+..+..++...+-++..+..+......+..............+.
T Consensus       387 ~Ss~~~-----------~e~----~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld  451 (1174)
T KOG0933|consen  387 LSSNED-----------EEK----TLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELD  451 (1174)
T ss_pred             cccCcc-----------chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHH
Confidence            111111           111    26677778888888888888888888888888888888777777777777777777


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 047747          181 NLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEII----  256 (748)
Q Consensus       181 ~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~~l----  256 (748)
                      .++..+..+...+..+..+....    +.+......+...+..+...+..+...+......       |..++..+    
T Consensus       452 ~~q~eve~l~~~l~~l~~~~~~~----e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~-------Y~dP~~nfdrs~  520 (1174)
T KOG0933|consen  452 ALQNEVEKLKKRLQSLGYKIGQE----EALKQRRAKLHEDIGRLKDELDRLLARLANYEFT-------YQDPEPNFDRSK  520 (1174)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-------cCCCCccchHHH
Confidence            77777777766666666554332    2333333333333333333333333333222222       33333333    


Q ss_pred             -HHHHHHHHHhHH-HHHhhhhhH----------------HHHHHhhhHhhhHHHHHHHHHHHhHh---------------
Q 047747          257 -RNLKLEAESLNN-DMLEGLAVN----------------AELKQKLSIAGELEAELNHRLEDISR---------------  303 (748)
Q Consensus       257 -~~~~~el~~~~~-~~~~ai~~~----------------~~Lk~~~~~~gr~t~~~~l~L~~i~~---------------  303 (748)
                       ..+...|+.|++ .|.+|++++                ..|-+.....-|+|   .+||++|..               
T Consensus       521 V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvT---iIPLnKI~s~~~s~~v~~~ak~v~  597 (1174)
T KOG0933|consen  521 VKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVT---IIPLNKIQSFVLSPNVLQAAKNVG  597 (1174)
T ss_pred             HHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcccccceeE---EEechhhhhccCCHhHHHHHHHhc
Confidence             334558888875 588888772                33333222256788   889998874               


Q ss_pred             ------------------------hhhhhhHH-HHHHHHHhHh---hHHHHHHHHhhHHhHHHHHHH-hh
Q 047747          304 ------------------------DKDNLIME-KETVLRRVEE---GEKIAEDLRNSADQLNEEKLV-LG  344 (748)
Q Consensus       304 ------------------------l~~~lv~e-l~~a~~~~~~---~~~~Vt~L~~l~g~l~~~~g~-~~  344 (748)
                                              ||.|+||+ ++.|....++   +.+.||    ++|+++.|+|. ||
T Consensus       598 ~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVT----l~GDV~dP~GtlTG  663 (1174)
T KOG0933|consen  598 NDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVT----LEGDVYDPSGTLTG  663 (1174)
T ss_pred             CchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceee----ecCceeCCCCcccC
Confidence                                    99999999 9999666644   456699    99999999999 76

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.85  E-value=1.1e-15  Score=190.74  Aligned_cols=348  Identities=21%  Similarity=0.270  Sum_probs=161.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747          347 LETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSS  426 (748)
Q Consensus       347 i~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~  426 (748)
                      +..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..
T Consensus       672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~  751 (1179)
T TIGR02168       672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ  751 (1179)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555444445555555555555555555444444444


Q ss_pred             HHhhhhhhccchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 047747          427 LVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELT  506 (748)
Q Consensus       427 l~~~~~~~~~~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~  506 (748)
                      +..    ........+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+......+.
T Consensus       752 ~~~----~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  827 (1179)
T TIGR02168       752 LSK----ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE  827 (1179)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433    3333333333333333333333333333333333333333333333333333333333333333333332222


Q ss_pred             HHHHHHhhhhH---hHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHHHHHHHHHHHHH
Q 047747          507 TTIMKLEANES---ESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD---DEASTQVKGLMNQVDTLQQELESLR  580 (748)
Q Consensus       507 ~l~~~l~~~~~---~~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~---~~~~~~~~~l~~~l~~l~~~~~~l~  580 (748)
                      .+...+.....   .+...+..+...+..+...+..+...+..+...+..+.   ..+...+..+...+..+...+..+.
T Consensus       828 ~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  907 (1179)
T TIGR02168       828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE  907 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222221111   11222222222333333333333333333333332222   1123333344444444444444444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHH----HHHHHHHHHHHHHHhhhhHHHH---
Q 047747          581 GQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKI----LEEIES----LTARIKSLELEVASLGNQKSDL---  649 (748)
Q Consensus       581 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~----~~~~~~----l~~~~~~l~~~l~~l~~e~~~l---  649 (748)
                      ..+..+...+..+...+..+...+..+...+......+...    ......    +...+..+...+..+++.+.++   
T Consensus       908 ~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lg~aiee~~~~  987 (1179)
T TIGR02168       908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV  987 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHhhccccccCHHHHHHHHHHHHHHHHHcCCC
Confidence            44444444444444444444444444444444321111100    000111    2334556666666666644443   


Q ss_pred             H----HHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHH----HHHhHHHHHHHhhh
Q 047747          650 E----EQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTER----GSELSSLQEKHINV  698 (748)
Q Consensus       650 ~----~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~----~~~l~~l~~~l~~~  698 (748)
                      .    +++.++..++.+|...+..+...|..++..+..+    ...|..+...|...
T Consensus       988 ~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~ 1044 (1179)
T TIGR02168       988 NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNEN 1044 (1179)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3    8999999999999999999999999999888766    34566666666543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2.8e-16  Score=173.35  Aligned_cols=398  Identities=15%  Similarity=0.139  Sum_probs=263.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047747          124 SEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAEL  203 (748)
Q Consensus       124 ~~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l  203 (748)
                      +.....|..|+++.....      ...+..+..+...-+..+........+++..+..+...+..+......+...+..+
T Consensus       362 d~~~~ey~rlk~ea~~~~------~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~  435 (1141)
T KOG0018|consen  362 DDQVEEYERLKEEACKEA------LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSL  435 (1141)
T ss_pred             hHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777777655443      56667777777777777777888888888999999988888888888888888888


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-------HHHHHHhH
Q 047747          204 NQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSK---------IQEAEEIIRNL-------KLEAESLN  267 (748)
Q Consensus       204 ~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~---------~~~~~~~l~~~-------~~el~~~~  267 (748)
                      ...+..+......+...+.....+...++.++.....++..+...         ...++..|+..       .+|||.+.
T Consensus       436 ~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~fPgv~GrviDLc~pt  515 (1141)
T KOG0018|consen  436 SRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLFPGVYGRVIDLCQPT  515 (1141)
T ss_pred             HHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhCCCccchhhhccccc
Confidence            888888888888888888888888888888888888888777665         33444444432       24999987


Q ss_pred             -HHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhHh-----------------------
Q 047747          268 -NDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDISR-----------------------  303 (748)
Q Consensus       268 -~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~-----------------------  303 (748)
                       .+|..|+.++                    .|||.++  +|..|   |+||+.|..                       
T Consensus       516 ~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr--~~~~T---FlPld~i~v~~~~e~lr~~~g~rlv~Dvi~ye  590 (1141)
T KOG0018|consen  516 QKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQR--LEPMT---FLPLDSIRVKPVNEKLRELGGVRLVIDVINYE  590 (1141)
T ss_pred             HHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhc--cCCcc---ccchhhhhcCcccccccCcCCeEEEEEecCCC
Confidence             7899988763                    8999999  99999   999999984                       


Q ss_pred             ----------hhhhhhHH-HHHHHHHhHh---hHHHHHHHHhhHHhHHHHHHH-hhHHHHH--HHHHHhHHHHHHHHHHH
Q 047747          304 ----------DKDNLIME-KETVLRRVEE---GEKIAEDLRNSADQLNEEKLV-LGKELET--LRGKISNMEQQLESSKQ  366 (748)
Q Consensus       304 ----------l~~~lv~e-l~~a~~~~~~---~~~~Vt~L~~l~g~l~~~~g~-~~~ei~~--l~~~l~~le~~l~~~~~  366 (748)
                                +|++|||+ ++.|+...++   +..+||    ++|.++..+|. ||+-...  -...+..|....+.+.+
T Consensus       591 ~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~k~va----ldGtl~~ksGlmsGG~s~~~wdek~~~~L~~~k~rl~e  666 (1141)
T KOG0018|consen  591 PEYEKAVQFACGNALVCDSVEDARDLAYGGEIRFKVVA----LDGTLIHKSGLMSGGSSGAKWDEKEVDQLKEKKERLLE  666 (1141)
T ss_pred             HHHHHHHHHHhccceecCCHHHHHHhhhcccccceEEE----eeeeEEeccceecCCccCCCcCHHHHHHHHHHHHHHHH
Confidence                      99999999 9999666654   467899    99999999998 7643220  11345555555555555


Q ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccchHHHHHHHH
Q 047747          367 EVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQ  446 (748)
Q Consensus       367 ~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~~~~~~~~~~e  446 (748)
                      ++..+..  ...         ........+..++..+..+..++..++..+...+.++.....    .+.....++..+.
T Consensus       667 el~ei~~--~~~---------e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~----~i~~~~p~i~~i~  731 (1141)
T KOG0018|consen  667 ELKEIQK--RRK---------EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTES----EIDEFGPEISEIK  731 (1141)
T ss_pred             HHHHHHH--hhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhCchHHHHH
Confidence            5555544  111         344455556666666666666666666666666666666655    5555556666777


Q ss_pred             HHHhhHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHh-hhhHhHHHH
Q 047747          447 AQVTGLELELESLQAHNRDMVVQIDS-KAAAAKQLEEENLQLQARIS--DLEMLTKERGDELTTTIMKLE-ANESESLSR  522 (748)
Q Consensus       447 ~el~~l~~~~~~l~~~l~~l~~~l~~-~~~~~~~l~~~~~~l~~~l~--~l~~~l~~~~~el~~l~~~l~-~~~~~~~~~  522 (748)
                      ..+...+..+..|+..+...+..+.. +...+.--   +..++..-.  .......+...++..+..+++ ........+
T Consensus       732 r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~---ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~  808 (1141)
T KOG0018|consen  732 RKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR---IREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRR  808 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee---eehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHH
Confidence            77777777777777777777776644 33332211   222222111  111112222233333333333 111334555


Q ss_pred             HHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhh
Q 047747          523 IENLTAQINDLLADLDSLHNEKSKLEEHMVFK  554 (748)
Q Consensus       523 i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l  554 (748)
                      +..+...+..++.+++.+......+...+.+.
T Consensus       809 ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~  840 (1141)
T KOG0018|consen  809 VERWERSVEDLEKEIEGLKKDEEAAEKIIAEI  840 (1141)
T ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH
Confidence            55555556666666665555555555444444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.75  E-value=1.5e-09  Score=131.52  Aligned_cols=76  Identities=22%  Similarity=0.223  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhH
Q 047747          599 EYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGI  674 (748)
Q Consensus       599 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i  674 (748)
                      .....+..+...+......++.+..+...+...+..+...+.+++..+.+++.....++.++.+++..+..++..+
T Consensus      1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~l 1542 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAAL 1542 (1930)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333333333333444444444455555555555555555555555555555555555555555444433

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.73  E-value=3.4e-11  Score=150.50  Aligned_cols=145  Identities=22%  Similarity=0.332  Sum_probs=78.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 047747          352 GKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMH  431 (748)
Q Consensus       352 ~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~  431 (748)
                      ..+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..  
T Consensus       670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--  747 (1179)
T TIGR02168       670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE--  747 (1179)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            455666667777777777776666666666666666666666666666666666666666666666665555555544  


Q ss_pred             hhhccchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          432 EVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKE  500 (748)
Q Consensus       432 ~~~~~~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~  500 (748)
                        .+......+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..
T Consensus       748 --e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  814 (1179)
T TIGR02168       748 --RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL  814 (1179)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3334444444444444444444444444444444444444433444444444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.73  E-value=2.8e-09  Score=129.27  Aligned_cols=100  Identities=20%  Similarity=0.166  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhhh----
Q 047747          627 SLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKA----  702 (748)
Q Consensus       627 ~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~a----  702 (748)
                      .+...+..++.+++....+.....++..........+..++..-....-.++.....+......+..++.+.+..+    
T Consensus      1720 klE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~ 1799 (1930)
T KOG0161|consen 1720 KLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGG 1799 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            3444444444444444444444444444444444444444444444444444444444444445555555443222    


Q ss_pred             hHHHHHHHHhhcchHhhhccCCCC
Q 047747          703 SAQITAMAAQASLPQISRNGAGAG  726 (748)
Q Consensus       703 ~~~~~~l~~~i~~Lk~~l~~lG~~  726 (748)
                      -..+..|..+|..|...+++-|-+
T Consensus      1800 k~~i~~Learir~LE~~l~~E~~~ 1823 (1930)
T KOG0161|consen 1800 KKQIAKLEARIRELESELEGEQRR 1823 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhh
Confidence            234677888888888888766544

>TIGR00606 rad50 rad50

Probab=99.67  E-value=7.5e-10  Score=136.84  Aligned_cols=132  Identities=13%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          346 ELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVS  425 (748)
Q Consensus       346 ei~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~  425 (748)
                      +++.+...+..++.++..+...+..+...+......+..+.. +......+..+..++..++.++..+...+       .
T Consensus       745 eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l-------~  816 (1311)
T TIGR00606       745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKL-------Q  816 (1311)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c
Confidence            444455555555555555555555555555544444444433 22333333444444444444444433333       2


Q ss_pred             hHHhhhhhhccchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          426 SLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDL  494 (748)
Q Consensus       426 ~l~~~~~~~~~~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l  494 (748)
                      ...       .  ...+.+++.++..+...+..+...+..+..........+..|+..+..+......+
T Consensus       817 ~~~-------~--~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl  876 (1311)
T TIGR00606       817 GSD-------L--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQI  876 (1311)
T ss_pred             ccc-------c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111       1  12445556666666666666666665555555555555555555444444333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.67  E-value=9.4e-09  Score=128.36  Aligned_cols=167  Identities=19%  Similarity=0.176  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047747          564 GLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLG  643 (748)
Q Consensus       564 ~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~  643 (748)
                      .+...+..+...+..+...+..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+.
T Consensus       802 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  881 (1164)
T TIGR02169       802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE  881 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444433333333333333344333333333333333333334444444444444444444


Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhh---------hhHHHHHHHHhhc
Q 047747          644 NQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENK---------ASAQITAMAAQAS  714 (748)
Q Consensus       644 ~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~---------a~~~~~~l~~~i~  714 (748)
                      .++..+...+..+...+..+...+..+...+..+...+..+...+..+...+......         ....+..+...+.
T Consensus       882 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  961 (1164)
T TIGR02169       882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQ  961 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHHHHHHH
Confidence            4444444444444444444444444444444444444444444444433333222100         0123467888999


Q ss_pred             chHhhhccCCCCceee
Q 047747          715 LPQISRNGAGAGSCLV  730 (748)
Q Consensus       715 ~Lk~~l~~lG~~~~~~  730 (748)
                      .+..+|..+||++...
T Consensus       962 ~l~~~i~~l~~vN~~A  977 (1164)
T TIGR02169       962 RVEEEIRALEPVNMLA  977 (1164)
T ss_pred             HHHHHHHHcCCCChHH
Confidence            9999999999976443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.66  E-value=3.9e-08  Score=120.34  Aligned_cols=24  Identities=4%  Similarity=-0.004  Sum_probs=20.6

Q ss_pred             HHHHhhcchHhhhccCCCCceeee
Q 047747          708 AMAAQASLPQISRNGAGAGSCLVL  731 (748)
Q Consensus       708 ~l~~~i~~Lk~~l~~lG~~~~~~~  731 (748)
                      .+...+..++.++..+||++..++
T Consensus       946 ~~~~~i~~le~~i~~lg~VN~~Ai  969 (1163)
T COG1196         946 ELEREIERLEEEIEALGPVNLRAI  969 (1163)
T ss_pred             HHHHHHHHHHHHHHhccCCChhHH
Confidence            688999999999999999995443

>PRK02224 chromosome segregation protein; Provisional

Probab=99.65  E-value=4.8e-09  Score=126.11  Aligned_cols=14  Identities=0%  Similarity=-0.308  Sum_probs=6.0

Q ss_pred             HHHHhhcchHhhhc
Q 047747          708 AMAAQASLPQISRN  721 (748)
Q Consensus       708 ~l~~~i~~Lk~~l~  721 (748)
                      .+...+..+-..+.
T Consensus       738 ~~~~~~~~~~~~~~  751 (880)
T PRK02224        738 TLERMLNETFDLVY  751 (880)
T ss_pred             HHHHHHHHHHHHHc
Confidence            34444444444443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.62  E-value=1.8e-08  Score=113.82  Aligned_cols=28  Identities=11%  Similarity=0.272  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhhhcc
Q 047747           62 LIEGFHSQYQSLYAQYDNLRGELKKKIH   89 (748)
Q Consensus        62 ~~~e~~~~~~~l~~~~~~~~~~~~~~~~   89 (748)
                      ..+++.+.|..|+.-|+...+.+.....
T Consensus         4 ql~~~q~E~e~L~~ele~~~~~l~~~~~   31 (775)
T PF10174_consen    4 QLERLQRENERLRRELERKQSKLGSSMN   31 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3567888899999999998888877653

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK02224 chromosome segregation protein; Provisional

Probab=99.62  E-value=2.9e-08  Score=119.39  Aligned_cols=6  Identities=0%  Similarity=-0.435  Sum_probs=2.3

Q ss_pred             chHhhh
Q 047747          715 LPQISR  720 (748)
Q Consensus       715 ~Lk~~l  720 (748)
                      .+...+
T Consensus       738 ~~~~~~  743 (880)
T PRK02224        738 TLERML  743 (880)
T ss_pred             HHHHHH
Confidence            333433

>TIGR00606 rad50 rad50

Probab=99.58  E-value=1e-07  Score=118.10  Aligned_cols=26  Identities=15%  Similarity=0.095  Sum_probs=14.2

Q ss_pred             CCCchhhhhhHHHHHHHHHHHHHhhc
Q 047747           20 PEKDEQLKGNKIEIEDKFKKILKLVQ   45 (748)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~   45 (748)
                      |..-.||...+.....++..+-.-+.
T Consensus       297 ~~s~eEL~~ll~~f~~~~~e~~~~~~  322 (1311)
T TIGR00606       297 QGTDEQLNDLYHNHQRTVREKERELV  322 (1311)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666655555555444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.57  E-value=1.1e-07  Score=107.68  Aligned_cols=23  Identities=9%  Similarity=0.280  Sum_probs=10.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 047747          128 KTTDGMKQELDAATLEVSELKRR  150 (748)
Q Consensus       128 ~~~~~lk~~l~~~~~ei~~l~~~  150 (748)
                      ..+..|+.++......+......
T Consensus        10 ~E~e~L~~ele~~~~~l~~~~~~   32 (775)
T PF10174_consen   10 RENERLRRELERKQSKLGSSMNS   32 (775)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHh
Confidence            34444444444444444333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK03918 chromosome segregation protein; Provisional

Probab=99.53  E-value=5.5e-07  Score=108.69  Aligned_cols=40  Identities=18%  Similarity=0.344  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047747          389 ISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLV  428 (748)
Q Consensus       389 l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~  428 (748)
                      +..+......+...+..+...+..+...+..+...+..+.
T Consensus       393 l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~  432 (880)
T PRK03918        393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK  432 (880)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444455555555555555555554444443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.53  E-value=5.4e-07  Score=107.94  Aligned_cols=72  Identities=18%  Similarity=0.210  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 047747          140 ATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAG  211 (748)
Q Consensus       140 ~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~  211 (748)
                      ++.++..++..+..+..+...+.....-...++..++..|...+.++..+......+...+..-...+..+.
T Consensus       659 l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s  730 (1822)
T KOG4674|consen  659 LQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLS  730 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444444444444444444444333333333333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.50  E-value=8.6e-07  Score=106.27  Aligned_cols=151  Identities=21%  Similarity=0.262  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccc
Q 047747          358 EQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNE  437 (748)
Q Consensus       358 e~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~~  437 (748)
                      ...+.-+...+.-+...+.....+...+..+...+..-|......+..+..++-.....+..+..++..+..    .-.-
T Consensus       681 ~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKq----E~~l  756 (1822)
T KOG4674|consen  681 KNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQ----EKLL  756 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHH
Confidence            333334445555555555555555555555555555555555555556666666666666666666666655    2222


Q ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 047747          438 TLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSK----AAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKL  512 (748)
Q Consensus       438 ~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~----~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l  512 (748)
                      .......+..++..|..+...++..+..++......    ......+...+..+...+..+...+.....++..+...+
T Consensus       757 l~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~  835 (1822)
T KOG4674|consen  757 LKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSL  835 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            222233334444444444444443333333322221    112233334444444444444444444444444444333

>PRK03918 chromosome segregation protein; Provisional

Probab=99.42  E-value=3.3e-06  Score=101.99  Aligned_cols=27  Identities=7%  Similarity=0.320  Sum_probs=12.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047747          125 EYQKTTDGMKQELDAATLEVSELKRRM  151 (748)
Q Consensus       125 ~~~~~~~~lk~~l~~~~~ei~~l~~~l  151 (748)
                      .|...+..++.....+...+..+...+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l  185 (880)
T PRK03918        159 DYENAYKNLGEVIKEIKRRIERLEKFI  185 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555554444444444444433

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.26  E-value=7.4e-13  Score=154.27  Aligned_cols=31  Identities=6%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 047747           55 IKEPLVELIEGFHSQYQSLYAQYDNLRGELK   85 (748)
Q Consensus        55 ~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~   85 (748)
                      +|....+...++.+.+..|.++++...+...
T Consensus        61 ~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~   91 (859)
T PF01576_consen   61 ARAKAEKQRRDLSEELEELKERLEEAGGATQ   91 (859)
T ss_dssp             -------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence            3777778888888888888888888877644

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.18  E-value=5.5e-05  Score=91.26  Aligned_cols=45  Identities=20%  Similarity=0.327  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          132 GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAG  176 (748)
Q Consensus       132 ~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le  176 (748)
                      .+...+..+...+..+...+..+..+...+...+......+..++
T Consensus       194 ~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~  238 (895)
T PRK01156        194 SSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK  238 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=3e-05  Score=86.78  Aligned_cols=213  Identities=18%  Similarity=0.111  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 047747          520 LSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISE  599 (748)
Q Consensus       520 ~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~  599 (748)
                      ...+..+..+|......+......+..++..+......-...+.++...+..+...+..........+.....+..+.+.
T Consensus       747 ~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~  826 (1174)
T KOG0933|consen  747 LEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEE  826 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444455555444444433344555666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHH
Q 047747          600 YIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEK  679 (748)
Q Consensus       600 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~  679 (748)
                      +..++...+..+......+..+..++..+...+...+.....+..++......+...+.++..+-...+.+...+...+.
T Consensus       827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l  906 (1174)
T KOG0933|consen  827 LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGEL  906 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccc
Confidence            66666666666666666666666666666666666666666666666666666666666655444444444443333333


Q ss_pred             HHHHHHHH--------------hHHHHHHHhhhh-------------hhhhHHHHHHHHhhcchHhhhccCCCCceeeec
Q 047747          680 TLTERGSE--------------LSSLQEKHINVE-------------NKASAQITAMAAQASLPQISRNGAGAGSCLVLH  732 (748)
Q Consensus       680 ~~~~~~~~--------------l~~l~~~l~~~~-------------~~a~~~~~~l~~~i~~Lk~~l~~lG~~~~~~~~  732 (748)
                      ....+..+              ++.+..++.-..             ..-+.++.....++..|+.....++...++..+
T Consensus       907 ~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m  986 (1174)
T KOG0933|consen  907 ERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNM  986 (1174)
T ss_pred             hHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHH
Confidence            33322222              222222111110             000334556677777777777777776666543

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.13  E-value=4.2e-05  Score=85.29  Aligned_cols=112  Identities=22%  Similarity=0.281  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047747          131 DGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALS-----RIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQ  205 (748)
Q Consensus       131 ~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~-----~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~  205 (748)
                      ...++.-.+....+.-+..++..+..+++.+. .|+.+..     .+.-+..++.+....+..++........+......
T Consensus       180 ~ET~qK~ekI~ell~yieerLreLEeEKeeL~-~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~  258 (1200)
T KOG0964|consen  180 EETKQKREKINELLKYIEERLRELEEEKEELE-KYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYID  258 (1200)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHH
Confidence            34444556666667777888888888888876 4666554     34455677888888888887777776666666666


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          206 KLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQ  243 (748)
Q Consensus       206 ~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~  243 (748)
                      .+.........+..++..+...+..+..+.+.+.....
T Consensus       259 ~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t  296 (1200)
T KOG0964|consen  259 ALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARET  296 (1200)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666667777777777777777666666665555543

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=6.4e-05  Score=85.78  Aligned_cols=23  Identities=9%  Similarity=-0.019  Sum_probs=14.5

Q ss_pred             HHHhhcchHhhhccCCCCceeee
Q 047747          709 MAAQASLPQISRNGAGAGSCLVL  731 (748)
Q Consensus       709 l~~~i~~Lk~~l~~lG~~~~~~~  731 (748)
                      +...|..|+.++.++|..+..++
T Consensus      1076 i~e~i~~lE~~~~~l~~vd~~~i 1098 (1293)
T KOG0996|consen 1076 INEKIALLEKRVEELREVDLGVI 1098 (1293)
T ss_pred             HHHHHHHHHHHHHHhcCCChHHH
Confidence            44467777777777765554443

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.07  E-value=2e-11  Score=142.42  Aligned_cols=23  Identities=17%  Similarity=0.069  Sum_probs=0.0

Q ss_pred             HHHHHHHhhcchHhhhccCCCCc
Q 047747          705 QITAMAAQASLPQISRNGAGAGS  727 (748)
Q Consensus       705 ~~~~l~~~i~~Lk~~l~~lG~~~  727 (748)
                      .-..|..+|..|+.+|..+....
T Consensus       715 ~k~~LE~q~keLq~rl~e~E~~~  737 (859)
T PF01576_consen  715 EKKALERQVKELQARLEEAEQSA  737 (859)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            34556777777777776654433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.05  E-value=0.00019  Score=86.62  Aligned_cols=31  Identities=19%  Similarity=0.282  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          391 EMSNEFQQAQNLIQDLMAESSQLKEKMVEKE  421 (748)
Q Consensus       391 ~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le  421 (748)
                      .+...+..+...+..+..++..+...+..+.
T Consensus       413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~  443 (895)
T PRK01156        413 EINVKLQDISSKVSSLNQRIRALRENLDELS  443 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444445555555555444444444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=99.01  E-value=6.3e-05  Score=81.01  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=12.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHH
Q 047747          347 LETLRGKISNMEQQLESSKQEVSDLSQNLTATEE  380 (748)
Q Consensus       347 i~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~  380 (748)
                      +..+..+...|......++.+...++..+..++.
T Consensus       145 lE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~  178 (546)
T PF07888_consen  145 LEECQKEKEELLKENEQLEEEVEQLREEVERLEA  178 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.98  E-value=8e-05  Score=80.22  Aligned_cols=42  Identities=29%  Similarity=0.347  Sum_probs=17.8

Q ss_pred             HHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHH
Q 047747          639 VASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKT  680 (748)
Q Consensus       639 l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~  680 (748)
                      +.+...++.+++..++-+..+...+..+...|..-|..|+..
T Consensus       412 lsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r  453 (546)
T PF07888_consen  412 LSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQR  453 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444444443333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.98  E-value=0.00019  Score=81.29  Aligned_cols=170  Identities=15%  Similarity=0.144  Sum_probs=91.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHH
Q 047747          560 TQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVN---------KTEVQQKILEEIESLTA  630 (748)
Q Consensus       560 ~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~---------~~~~~~~~~~~~~~l~~  630 (748)
                      ..+..+...+..+......+...+..+..........+..+...+..+...+..         |..-+..+...+..+..
T Consensus       383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~  462 (569)
T PRK04778        383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAE  462 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444445555555444444444455555555544444433         22233344444555555


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHH
Q 047747          631 RIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMA  710 (748)
Q Consensus       631 ~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~a~~~~~~l~  710 (748)
                      .+..-.-.+..+..++..+..++.++..+..++......++..|..    -.+....+..+...|.....  ...--.++
T Consensus       463 ~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy----~nRfr~~~~~V~~~f~~Ae~--lF~~~~Y~  536 (569)
T PRK04778        463 ELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY----ANRYRSDNEEVAEALNEAER--LFREYDYK  536 (569)
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCCCCHHHHHHHHHHHH--HHHhCChH
Confidence            5554444455666678888888888888888888888777776665    33445566666666654320  00111234


Q ss_pred             HhhcchHhhhccCCCCceeeeccCc
Q 047747          711 AQASLPQISRNGAGAGSCLVLHSPY  735 (748)
Q Consensus       711 ~~i~~Lk~~l~~lG~~~~~~~~~~~  735 (748)
                      .-+..+-.-|...-||+..++..-|
T Consensus       537 ~al~~~~~alE~vePG~~~ri~~~y  561 (569)
T PRK04778        537 AALEIIATALEKVEPGVTKRIEDSY  561 (569)
T ss_pred             HHHHHHHHHHHhhCCcHHHHHHHHH
Confidence            4444445555666666665554443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.98  E-value=0.00021  Score=81.75  Aligned_cols=60  Identities=15%  Similarity=0.132  Sum_probs=25.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047747          443 KELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERG  502 (748)
Q Consensus       443 ~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~  502 (748)
                      ..+..++.....+++.....+..+..++.....+...+..........+......+..+.
T Consensus       737 ~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~  796 (1074)
T KOG0250|consen  737 EDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALK  796 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            334444444444444444444444444444444444444444443333333333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.96  E-value=4.8e-05  Score=85.97  Aligned_cols=118  Identities=12%  Similarity=0.100  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhh
Q 047747          618 QQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHIN  697 (748)
Q Consensus       618 ~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~  697 (748)
                      ...+..++..+...+..+...+......|..+...+..+..++..+......+...+..+.....+....+..+...+..
T Consensus       350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~  429 (569)
T PRK04778        350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE  429 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556666666666666666666666666666666666666666666666666666655555555555555444443


Q ss_pred             hh------------hhhhHHHHHHHHhhcchHhhhccCCCCceeeeccCcc
Q 047747          698 VE------------NKASAQITAMAAQASLPQISRNGAGAGSCLVLHSPYS  736 (748)
Q Consensus       698 ~~------------~~a~~~~~~l~~~i~~Lk~~l~~lG~~~~~~~~~~~~  736 (748)
                      ..            ......+..+...+..|..+|.. ||.+...+...|-
T Consensus       430 ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~  479 (569)
T PRK04778        430 IKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLE  479 (569)
T ss_pred             HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHH
Confidence            32            11244567889999999999999 9999988875543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.92  E-value=0.0007  Score=83.57  Aligned_cols=70  Identities=17%  Similarity=0.203  Sum_probs=39.4

Q ss_pred             HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 047747          444 ELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLE  513 (748)
Q Consensus       444 ~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~  513 (748)
                      .++..+..+...+..+......++..+......+..+...+......+......+..+..+...+..++.
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  673 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE  673 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            4555555566666666666666666666666666666666655555555555555555544444444433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.77  E-value=0.00079  Score=75.10  Aligned_cols=9  Identities=11%  Similarity=0.398  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 047747          143 EVSELKRRM  151 (748)
Q Consensus       143 ei~~l~~~l  151 (748)
                      ++..++..+
T Consensus        35 eL~~~qeel   43 (522)
T PF05701_consen   35 ELEKAQEEL   43 (522)
T ss_pred             HHHHHHHHH
Confidence            333333333

Several sequences in this family are described as being myosin heavy chain-like.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.74  E-value=4.4e-05  Score=75.97  Aligned_cols=124  Identities=16%  Similarity=0.171  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 047747          568 QVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKS  647 (748)
Q Consensus       568 ~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~  647 (748)
                      ........+..+...+..++..+.........+...+..+...+......+..+.........+...++..|..|...+.
T Consensus       107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lk  186 (237)
T PF00261_consen  107 RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLK  186 (237)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444444444444444444444455555555555555555


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHH
Q 047747          648 DLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSL  691 (748)
Q Consensus       648 ~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l  691 (748)
                      ....+..+.+..+..|...+..+...+.........+...++..
T Consensus       187 eaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~  230 (237)
T PF00261_consen  187 EAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT  230 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.72  E-value=0.00044  Score=72.54  Aligned_cols=30  Identities=23%  Similarity=0.253  Sum_probs=12.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 047747          354 ISNMEQQLESSKQEVSDLSQNLTATEEENK  383 (748)
Q Consensus       354 l~~le~~l~~~~~~l~~l~~~l~~~~~~l~  383 (748)
                      +..|...+...-..+..|+.....+...+.
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~   35 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEIE   35 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            334444444433444444443333333333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.67  E-value=0.0013  Score=72.00  Aligned_cols=57  Identities=21%  Similarity=0.255  Sum_probs=24.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          126 YQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNL  182 (748)
Q Consensus       126 ~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l  182 (748)
                      |......+.+.+...+.+|..|+.++..++.++..++..+.-....+.+.+.+|.++
T Consensus        90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~  146 (1265)
T KOG0976|consen   90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENL  146 (1265)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333444444444444444444444444444444444333333333333333333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.67  E-value=7.5e-05  Score=74.31  Aligned_cols=75  Identities=20%  Similarity=0.244  Sum_probs=29.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 047747          573 QQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKS  647 (748)
Q Consensus       573 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~  647 (748)
                      ...+..+...+..++............+...|..+...+..+......+...+..+...++.++..+......+.
T Consensus       147 E~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~  221 (237)
T PF00261_consen  147 EEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK  221 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333344444444444444444333333333333333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.62  E-value=0.0023  Score=72.21  Aligned_cols=51  Identities=24%  Similarity=0.250  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          196 LTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTAL  246 (748)
Q Consensus       196 l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~  246 (748)
                      +..++..++.++..+..++.+.-..+..++.+|+.++.++..++++..+..
T Consensus       175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l  225 (1195)
T KOG4643|consen  175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFL  225 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555566666666666666666666654443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.54  E-value=0.0013  Score=71.05  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhh
Q 047747          620 KILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHIN  697 (748)
Q Consensus       620 ~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~  697 (748)
                      ...+++..+...+..+...+.++......+..++.+++.++.+-....   +..+...+..+.++..++..+...+..
T Consensus       293 ~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~---e~~L~~kd~~i~~mReec~~l~~Elq~  367 (546)
T KOG0977|consen  293 YAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSF---EQALNDKDAEIAKMREECQQLSVELQK  367 (546)
T ss_pred             HHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555555555555555444333322   334444444444444444444444433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.52  E-value=0.0016  Score=70.55  Aligned_cols=37  Identities=14%  Similarity=0.100  Sum_probs=21.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 047747          352 GKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLK  388 (748)
Q Consensus       352 ~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~  388 (748)
                      .+|..|...|...-..+..|+.+...++.++..++..
T Consensus        42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~   78 (546)
T KOG0977|consen   42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV   78 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566666666666666666666555555555555443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.50  E-value=0.0048  Score=69.57  Aligned_cols=115  Identities=19%  Similarity=0.252  Sum_probs=54.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 047747          353 KISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHE  432 (748)
Q Consensus       353 ~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~  432 (748)
                      .|..++.++..+...+.....+...+......+......+..+...+..++..++.+-.++-....+++.+--.++. .-
T Consensus        35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK-qv  113 (717)
T PF09730_consen   35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK-QV  113 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HH
Confidence            34444444444444444444444444444444444444444455555555555555544544455555444433333 00


Q ss_pred             hhccchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q 047747          433 VRGNETLAQIKELQAQVTGLELELESLQAHNRDMVV  468 (748)
Q Consensus       433 ~~~~~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~  468 (748)
                      -.+...+-++..++-++..+..++.-+..+++++..
T Consensus       114 s~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r  149 (717)
T PF09730_consen  114 SVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR  149 (717)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011123445666666666666666666666555443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.48  E-value=0.011  Score=73.09  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          223 DMKRQLTARSEEKEALNLEYQTALSKIQEAEEII  256 (748)
Q Consensus       223 ~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~~l  256 (748)
                      .++..+..+...+..+...+..+..+|......+
T Consensus       356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l  389 (1201)
T PF12128_consen  356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL  389 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444443333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.47  E-value=0.0055  Score=69.13  Aligned_cols=61  Identities=15%  Similarity=0.154  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          132 GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTE  192 (748)
Q Consensus       132 ~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~  192 (748)
                      .+...+..++.++..++..+.....|.+.+.............++.+...++.++..++.+
T Consensus        31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r   91 (717)
T PF09730_consen   31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR   91 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666666666666666666666665555555555444444444444444444333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.47  E-value=0.0059  Score=69.08  Aligned_cols=38  Identities=13%  Similarity=0.378  Sum_probs=20.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 047747          346 ELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENK  383 (748)
Q Consensus       346 ei~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~  383 (748)
                      +|-+|...+..+..+.+..+.+.+.|..+...++....
T Consensus       302 eiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~e  339 (1195)
T KOG4643|consen  302 EIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKE  339 (1195)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44455556666666665555555555554444444333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.46  E-value=0.0055  Score=68.31  Aligned_cols=116  Identities=18%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhcc----chHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH
Q 047747          398 QAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGN----ETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSK  473 (748)
Q Consensus       398 ~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~----~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~  473 (748)
                      .++...+.|+.+++.+++++..++-+++-++.+.+....    ...-++.+++.....|...+-.++.-...-......+
T Consensus       322 mAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~  401 (1243)
T KOG0971|consen  322 MAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKL  401 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            344445555555666666666665555555553333322    2344666677666666666655555444444444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 047747          474 AAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLE  513 (748)
Q Consensus       474 ~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~  513 (748)
                      ..+++....++.++......+..++...+..+..++.+++
T Consensus       402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD  441 (1243)
T KOG0971|consen  402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD  441 (1243)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555544

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=98.41  E-value=0.0088  Score=68.35  Aligned_cols=46  Identities=22%  Similarity=0.282  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          196 LTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLE  241 (748)
Q Consensus       196 l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~  241 (748)
                      +......++..+......+...+..+..+...+.....+++.++..
T Consensus      1230 l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1230 LASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence            3333333444444444444444444444444443333444444333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.38  E-value=0.0068  Score=65.90  Aligned_cols=81  Identities=19%  Similarity=0.187  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          174 EAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAE  253 (748)
Q Consensus       174 ~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~  253 (748)
                      .+..++......+.-+...+.+....+.++.-.+......+..++........-|.....+.+.+...+..++....+.+
T Consensus       230 ey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~  309 (786)
T PF05483_consen  230 EYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESE  309 (786)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555556666666666666666666666666666666666666666666666666666655555444433


Q ss_pred             H
Q 047747          254 E  254 (748)
Q Consensus       254 ~  254 (748)
                      .
T Consensus       310 ~  310 (786)
T PF05483_consen  310 S  310 (786)
T ss_pred             H
Confidence            3

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.36  E-value=0.0094  Score=66.61  Aligned_cols=52  Identities=25%  Similarity=0.289  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          132 GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLK  183 (748)
Q Consensus       132 ~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~  183 (748)
                      ....++..++.++..++..+.....++.....++......+.++...|....
T Consensus        31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~   82 (522)
T PF05701_consen   31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQ   82 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677777777777777777777777776666555555555555544443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.35  E-value=0.01  Score=66.35  Aligned_cols=21  Identities=19%  Similarity=0.521  Sum_probs=11.0

Q ss_pred             HHHHHhHHHHHHHHHHHHHHH
Q 047747          350 LRGKISNMEQQLESSKQEVSD  370 (748)
Q Consensus       350 l~~~l~~le~~l~~~~~~l~~  370 (748)
                      |+.++.+|..+++.+.-...+
T Consensus       229 Lr~QvrdLtEkLetlR~kR~E  249 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRAE  249 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhh
Confidence            455555666666555444333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.34  E-value=0.023  Score=70.45  Aligned_cols=52  Identities=17%  Similarity=0.210  Sum_probs=22.4

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 047747          633 KSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTER  684 (748)
Q Consensus       633 ~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~  684 (748)
                      +.+...+.........+...+...+.++..+...+......+..+...+...
T Consensus      1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~a 1114 (1486)
T PRK04863       1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114 (1486)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=98.33  E-value=4.7e-06  Score=97.19  Aligned_cols=28  Identities=14%  Similarity=0.024  Sum_probs=13.1

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHhHHHHH
Q 047747          666 EKLGLLDGIFELEKTLTERGSELSSLQE  693 (748)
Q Consensus       666 ~~~~l~~~i~~le~~~~~~~~~l~~l~~  693 (748)
                      ++..+...+..++..+.+++.-|..-..
T Consensus       607 e~~~l~~~~~~~ekr~~RLkevf~~ks~  634 (722)
T PF05557_consen  607 EIAELKAELASAEKRNQRLKEVFKAKSQ  634 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555444443333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.32  E-value=0.012  Score=66.13  Aligned_cols=93  Identities=22%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 047747          525 NLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEV  604 (748)
Q Consensus       525 ~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l  604 (748)
                      .+...+.++...+..+....-++...+..           -..-..++..++..+...+..+...+.....++..+..+-
T Consensus       164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~-----------Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~  232 (617)
T PF15070_consen  164 ELKEQLAELQDAFVKLTNENMELTSALQS-----------EQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR  232 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            44455555555555555444444333322           2222223344444444444444444444444455555544


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHH
Q 047747          605 QILKEEIVNKTEVQQKILEEIESL  628 (748)
Q Consensus       605 ~~l~~~l~~~~~~~~~~~~~~~~l  628 (748)
                      ..+...+..|...+..+..+...+
T Consensus       233 dq~~~~Lqqy~a~~q~l~~e~e~L  256 (617)
T PF15070_consen  233 DQYLGHLQQYVAAYQQLASEKEEL  256 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555544444443333333

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=98.27  E-value=0.023  Score=67.35  Aligned_cols=58  Identities=12%  Similarity=0.139  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          440 AQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEML  497 (748)
Q Consensus       440 ~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~  497 (748)
                      ..+.++..+...+......+...+..++.........+..+....+........+...
T Consensus       819 ~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~  876 (1294)
T KOG0962|consen  819 RTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERS  876 (1294)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666666666666666666655555555555555444444444444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.26  E-value=0.017  Score=65.21  Aligned_cols=55  Identities=11%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747          559 STQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVN  613 (748)
Q Consensus       559 ~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~  613 (748)
                      ...+..+...+..+......+...+..+...-......+..+...+..++..+..
T Consensus       378 ~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek  432 (560)
T PF06160_consen  378 QEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK  432 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444455555555555555555555555555555555555555555544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.21  E-value=0.016  Score=63.10  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          155 SEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEE  234 (748)
Q Consensus       155 ~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e  234 (748)
                      ..+...-...++.....|....+-|..++=...++...+.+.-.+..++..+......-..-+..............+.+
T Consensus        98 esd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT~~rsaEK~~~yE~E  177 (786)
T PF05483_consen   98 ESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKETCQRSAEKMKKYEYE  177 (786)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444555555555566555555555555555555555555555555555556666666666666667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          235 KEALNLEYQTALSKIQEAEEIIRN  258 (748)
Q Consensus       235 ~~~~~~~l~e~~~~~~~~~~~l~~  258 (748)
                      .+....-|......|...+..+..
T Consensus       178 REET~qly~~l~~niekMi~aFEe  201 (786)
T PF05483_consen  178 REETRQLYMDLNENIEKMIAAFEE  201 (786)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHH
Confidence            777777766666666666655543

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.19  E-value=0.019  Score=63.23  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=9.4

Q ss_pred             HHHHhHHHHHhhhhhHHHHHHh
Q 047747          262 EAESLNNDMLEGLAVNAELKQK  283 (748)
Q Consensus       262 el~~~~~~~~~ai~~~~~Lk~~  283 (748)
                      .+..+...|.+-++.+..++..
T Consensus       177 ~lt~~~~q~~tkl~e~~~en~~  198 (1265)
T KOG0976|consen  177 ELNEFNMEFQTKLAEANREKKA  198 (1265)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHH
Confidence            3444444455444444333333

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.17  E-value=0.029  Score=64.41  Aligned_cols=38  Identities=16%  Similarity=0.201  Sum_probs=27.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          125 EYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALN  162 (748)
Q Consensus       125 ~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~  162 (748)
                      .+...|..++.+...++......-.+...+..++...+
T Consensus       157 ElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK  194 (1141)
T KOG0018|consen  157 ELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAK  194 (1141)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHH
Confidence            36788899999988888877777777776666663333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.14  E-value=0.029  Score=63.36  Aligned_cols=31  Identities=16%  Similarity=0.230  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 047747          399 AQNLIQDLMAESSQLKEKMVEKEREVSSLVE  429 (748)
Q Consensus       399 l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~  429 (748)
                      .......+...+..+......+..++..+..
T Consensus       304 V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~  334 (560)
T PF06160_consen  304 VEKNLKELYEYLEHAKEQNKELKEELERVSQ  334 (560)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555555554

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.13  E-value=0.012  Score=58.44  Aligned_cols=46  Identities=15%  Similarity=0.250  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          452 LELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEML  497 (748)
Q Consensus       452 l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~  497 (748)
                      +....+.+..++..+......+......+...+..+......+...
T Consensus        39 ~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~k   84 (294)
T COG1340          39 LAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAK   84 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=98.05  E-value=0.019  Score=64.27  Aligned_cols=140  Identities=14%  Similarity=0.123  Sum_probs=59.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 047747          574 QELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVN--KTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEE  651 (748)
Q Consensus       574 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~--~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~  651 (748)
                      .++..++..+..+..++......+..+..+++.+-..+..  |-..+-++...+..-+.+|..+-.....++.++..+..
T Consensus       447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g  526 (594)
T PF05667_consen  447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG  526 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444443333211  44444444444444444444444444444444444444


Q ss_pred             HHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHHhhcchHhhhc
Q 047747          652 QMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQISRN  721 (748)
Q Consensus       652 ~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~a~~~~~~l~~~i~~Lk~~l~  721 (748)
                      ++..-=....++--.-..-......+-+-+..+...|..+...+..        ...+...|..|..+|+
T Consensus       527 kL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~--------tG~~~rEirdLe~qI~  588 (594)
T PF05667_consen  527 KLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEE--------TGTISREIRDLEEQID  588 (594)
T ss_pred             HHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHH
Confidence            4443333333332222222223333334444444444444443332        2334444455554444

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.93  E-value=0.084  Score=61.30  Aligned_cols=115  Identities=14%  Similarity=0.177  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 047747          137 LDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAE  216 (748)
Q Consensus       137 l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~  216 (748)
                      +--..+.++.+..-+..+..-++.....+......+..+.+++...+..+..+.. +..+...+..+..  .-++..+..
T Consensus       202 lfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~-~e~~~~~l~~Lk~--k~~W~~V~~  278 (1074)
T KOG0250|consen  202 LFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ-LEDLKENLEQLKA--KMAWAWVNE  278 (1074)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHH
Confidence            3344456777777777777777777777777777777777777777766665443 1222222222221  124555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          217 LNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEE  254 (748)
Q Consensus       217 l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~  254 (748)
                      ...++..+...+...+..+..+..++......+..+..
T Consensus       279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~  316 (1074)
T KOG0250|consen  279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQ  316 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55556666666555555555555555554444444443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.88  E-value=0.035  Score=55.25  Aligned_cols=9  Identities=22%  Similarity=0.183  Sum_probs=3.9

Q ss_pred             hHHHHHHHh
Q 047747          688 LSSLQEKHI  696 (748)
Q Consensus       688 l~~l~~~l~  696 (748)
                      -..+.++|.
T Consensus       267 a~ei~EKfk  275 (294)
T COG1340         267 AEEIYEKFK  275 (294)
T ss_pred             HHHHHHHHh
Confidence            344444443

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.88  E-value=0.0068  Score=69.39  Aligned_cols=8  Identities=25%  Similarity=0.775  Sum_probs=3.8

Q ss_pred             hhhccccc
Q 047747          737 KIILMDEK  744 (748)
Q Consensus       737 ~~~~~~~~  744 (748)
                      .|++|||.
T Consensus       498 ~~lilDEp  505 (562)
T PHA02562        498 NLLILDEV  505 (562)
T ss_pred             CeEEEecc
Confidence            34455554

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.85  E-value=0.024  Score=64.87  Aligned_cols=36  Identities=11%  Similarity=0.223  Sum_probs=17.4

Q ss_pred             HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 047747          446 QAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLE  481 (748)
Q Consensus       446 e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~  481 (748)
                      ...+..++.++..+..++..+...+..+...+..+.
T Consensus       173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~  208 (562)
T PHA02562        173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQR  208 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            333444555555555555555555544444444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.85  E-value=0.033  Score=63.72  Aligned_cols=35  Identities=23%  Similarity=0.102  Sum_probs=15.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhh
Q 047747          638 EVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLD  672 (748)
Q Consensus       638 ~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~  672 (748)
                      .+.+...+++.+...+...+.++.+|+..+..+..
T Consensus       623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333334444444444444455555554444443

; GO: 0016021 integral to membrane

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.85  E-value=0.0015  Score=63.44  Aligned_cols=39  Identities=23%  Similarity=0.236  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHH
Q 047747          628 LTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEE  666 (748)
Q Consensus       628 l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~  666 (748)
                      +..++..++..+..+..++..+...+..+..++..++..
T Consensus        94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~  132 (239)
T COG1579          94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER  132 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.84  E-value=0.093  Score=58.93  Aligned_cols=33  Identities=12%  Similarity=0.193  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhh
Q 047747          523 IENLTAQINDLLADLDSLHNEKSKLEEHMVFKD  555 (748)
Q Consensus       523 i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~  555 (748)
                      +..+...+..+..++......+..|..++..+.
T Consensus       449 ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~  481 (594)
T PF05667_consen  449 IKELREEIKEIEEEIRQKEELYKQLVKELEKLP  481 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            334444455555555555555555555554444

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.79  E-value=0.15  Score=59.79  Aligned_cols=7  Identities=14%  Similarity=0.121  Sum_probs=4.1

Q ss_pred             CCchhhh
Q 047747           21 EKDEQLK   27 (748)
Q Consensus        21 ~~~~~~~   27 (748)
                      -+|+|+-
T Consensus       132 ~ns~Wiv  138 (1317)
T KOG0612|consen  132 GNSEWIV  138 (1317)
T ss_pred             CCcHHHH
Confidence            3477764

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.79  E-value=0.12  Score=58.49  Aligned_cols=38  Identities=34%  Similarity=0.413  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          147 LKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKL  184 (748)
Q Consensus       147 l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~  184 (748)
                      ++.++..+..+...+..........+.+++..|..++.
T Consensus        27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~   64 (617)
T PF15070_consen   27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN   64 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444443

>PRK11637 AmiB activator; Provisional

Probab=97.78  E-value=0.046  Score=59.92  Aligned_cols=10  Identities=0%  Similarity=0.302  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 047747          409 ESSQLKEKMV  418 (748)
Q Consensus       409 ~~~~l~~~l~  418 (748)
                      ++..+..++.
T Consensus        48 ~l~~l~~qi~   57 (428)
T PRK11637         48 QLKSIQQDIA   57 (428)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.77  E-value=0.024  Score=64.80  Aligned_cols=64  Identities=13%  Similarity=0.144  Sum_probs=33.4

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhh
Q 047747          634 SLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHIN  697 (748)
Q Consensus       634 ~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~  697 (748)
                      .|-..+..++.+...|+.-+..-..-..+|=..+.+....+.-++..+.....+|..++.++..
T Consensus       591 ~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~  654 (697)
T PF09726_consen  591 VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ  654 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444555555555555555555555556666666665544

; GO: 0016021 integral to membrane

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.75  E-value=0.00029  Score=82.34  Aligned_cols=73  Identities=16%  Similarity=0.120  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 047747          623 EEIESLTARIKSLELEVASLGNQKSDL-----EEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKH  695 (748)
Q Consensus       623 ~~~~~l~~~~~~l~~~l~~l~~e~~~l-----~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l  695 (748)
                      ..+..+..+...+...+..+......-     ...+.....++.+++..+..+......|..-......+|...--.+
T Consensus       566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~l  643 (722)
T PF05557_consen  566 STLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSL  643 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666665555554443211110     1223344556777777777777777777766666655555444333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=97.64  E-value=0.082  Score=53.25  Aligned_cols=138  Identities=15%  Similarity=0.218  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047747          523 IENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYII  602 (748)
Q Consensus       523 i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~  602 (748)
                      +..++..+..++.+...++.+...|..+...+++.-..-+.++-.++.....++..+...+.....+......++..+..
T Consensus       162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls  241 (306)
T PF04849_consen  162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS  241 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666555555433344455555666666666666666665555555555555555555


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 047747          603 EVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEG  660 (748)
Q Consensus       603 ~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~  660 (748)
                      ++..+...+..+...-+.+...+......-..+..++.+++..|.++..-+.....++
T Consensus       242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl  299 (306)
T PF04849_consen  242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL  299 (306)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555544444444333444444444444444444444444444443333333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.21  Score=56.19  Aligned_cols=56  Identities=14%  Similarity=0.019  Sum_probs=20.8

Q ss_pred             HHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHH
Q 047747          639 VASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEK  694 (748)
Q Consensus       639 l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~  694 (748)
                      ..++......++.........+.++...+..+...+..+.....+++.++..+...
T Consensus       561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k  616 (698)
T KOG0978|consen  561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK  616 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.60  E-value=0.03  Score=54.52  Aligned_cols=64  Identities=16%  Similarity=0.342  Sum_probs=27.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          354 ISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKM  417 (748)
Q Consensus       354 l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l  417 (748)
                      +..+..........+..+...+..+...+..+...+..+.+++..++.+++.+..++......+
T Consensus        19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          19 KDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344444444444444444444444444455555554444444444433

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.26  Score=55.40  Aligned_cols=14  Identities=0%  Similarity=-0.190  Sum_probs=5.3

Q ss_pred             HHhhcchHhhhccC
Q 047747          710 AAQASLPQISRNGA  723 (748)
Q Consensus       710 ~~~i~~Lk~~l~~l  723 (748)
                      ...+..|++.+...
T Consensus       607 eEE~e~L~~kle~~  620 (698)
T KOG0978|consen  607 EEELERLKRKLERL  620 (698)
T ss_pred             HHHHHHHHHHHHHh
Confidence            33333333333333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=97.52  E-value=0.15  Score=52.62  Aligned_cols=15  Identities=27%  Similarity=0.348  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 047747          483 ENLQLQARISDLEML  497 (748)
Q Consensus       483 ~~~~l~~~l~~l~~~  497 (748)
                      ....+..++..+-.+
T Consensus       136 eN~~L~eKlK~l~eQ  150 (309)
T PF09728_consen  136 ENEELREKLKSLIEQ  150 (309)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.49  E-value=0.04  Score=49.75  Aligned_cols=52  Identities=19%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          445 LQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEM  496 (748)
Q Consensus       445 ~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~  496 (748)
                      +...+..|+.++......+......+.......+.+...+..+..+....+.
T Consensus        78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~  129 (143)
T PF12718_consen   78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE  129 (143)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence            3344444444444444444444444444444444444444333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.39  E-value=0.76  Score=57.54  Aligned_cols=19  Identities=11%  Similarity=-0.078  Sum_probs=8.1

Q ss_pred             HHHHhhcchHhhhccCCCC
Q 047747          708 AMAAQASLPQISRNGAGAG  726 (748)
Q Consensus       708 ~l~~~i~~Lk~~l~~lG~~  726 (748)
                      .+...+..++..+..+|-.
T Consensus      1031 ~~~e~L~E~eqe~~~~g~~ 1049 (1486)
T PRK04863       1031 AKRQMLQELKQELQDLGVP 1049 (1486)
T ss_pred             HHHHHHHHHHHHHHHcCCC
Confidence            3344444444444444433

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.30  E-value=0.083  Score=47.71  Aligned_cols=23  Identities=9%  Similarity=0.323  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHH
Q 047747          357 MEQQLESSKQEVSDLSQNLTATE  379 (748)
Q Consensus       357 le~~l~~~~~~l~~l~~~l~~~~  379 (748)
                      |..+.+.+...+..+...+..+.
T Consensus         5 lk~E~d~a~~r~e~~e~~~K~le   27 (143)
T PF12718_consen    5 LKLEADNAQDRAEELEAKVKQLE   27 (143)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.25  E-value=0.16  Score=47.03  Aligned_cols=14  Identities=29%  Similarity=0.081  Sum_probs=5.3

Q ss_pred             hhHHHHHHHHHHhH
Q 047747          450 TGLELELESLQAHN  463 (748)
Q Consensus       450 ~~l~~~~~~l~~~l  463 (748)
                      ..|..+...++..+
T Consensus        18 ~~L~~en~kL~~~v   31 (193)
T PF14662_consen   18 QKLADENAKLQRSV   31 (193)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.15  E-value=0.68  Score=52.05  Aligned_cols=19  Identities=16%  Similarity=0.069  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 047747          399 AQNLIQDLMAESSQLKEKM  417 (748)
Q Consensus       399 l~~~i~~l~~~~~~l~~~l  417 (748)
                      +..+...+..++......+
T Consensus       683 l~~e~eeL~~~vq~~~s~h  701 (970)
T KOG0946|consen  683 LQVENEELEEEVQDFISEH  701 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.13  E-value=0.26  Score=47.01  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHhHhhHHHHHHHHHHHhhhh
Q 047747          524 ENLTAQINDLLADLDSLHNEKSKLEEHMVFK  554 (748)
Q Consensus       524 ~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l  554 (748)
                      ..+...+..+...+......+..|+..+.-.
T Consensus       121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~  151 (194)
T PF15619_consen  121 EELQRKLSQLEQKLQEKEKKIQELEKQLELE  151 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555554444333

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.13  E-value=0.56  Score=50.86  Aligned_cols=28  Identities=21%  Similarity=0.272  Sum_probs=10.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047747          453 ELELESLQAHNRDMVVQIDSKAAAAKQL  480 (748)
Q Consensus       453 ~~~~~~l~~~l~~l~~~l~~~~~~~~~l  480 (748)
                      ...+..+..++...+.++..++.....|
T Consensus       293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~L  320 (581)
T KOG0995|consen  293 EKKLEMLKSEIEEKEEEIEKLQKENDEL  320 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.13  E-value=0.33  Score=48.19  Aligned_cols=12  Identities=8%  Similarity=0.404  Sum_probs=5.1

Q ss_pred             HHHhHHHHHHHH
Q 047747          352 GKISNMEQQLES  363 (748)
Q Consensus       352 ~~l~~le~~l~~  363 (748)
                      .+|+.|..+++.
T Consensus         6 ~eia~LrlEidt   17 (305)
T PF14915_consen    6 DEIAMLRLEIDT   17 (305)
T ss_pred             HHHHHHHHHHHH
Confidence            344444444443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.81  Score=51.03  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHhhhhh
Q 047747          526 LTAQINDLLADLDSLHNEKSKLEEHMVFKD  555 (748)
Q Consensus       526 l~~~i~~l~~el~~l~~~~~~l~~~l~~l~  555 (748)
                      +......+..+++.|...+..|...+....
T Consensus       435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr  464 (1118)
T KOG1029|consen  435 LNAKKKQLQQELETLNFKLQQLSGKLQDVR  464 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence            344444455555555555555555554443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.01  E-value=0.00049  Score=80.27  Aligned_cols=19  Identities=0%  Similarity=-0.139  Sum_probs=0.0

Q ss_pred             HHHhhcchHhhhccCCCCc
Q 047747          709 MAAQASLPQISRNGAGAGS  727 (748)
Q Consensus       709 l~~~i~~Lk~~l~~lG~~~  727 (748)
                      +...+...+..|..+.+..
T Consensus       552 ~~~e~~~~~~~le~l~~~~  570 (713)
T PF05622_consen  552 LKDELQKKREQLEELEQEL  570 (713)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            3344444444555555443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK09039 hypothetical protein; Validated

Probab=97.00  E-value=0.13  Score=54.15  Aligned_cols=10  Identities=30%  Similarity=0.481  Sum_probs=3.8

Q ss_pred             HhHHHHHHHH
Q 047747          354 ISNMEQQLES  363 (748)
Q Consensus       354 l~~le~~l~~  363 (748)
                      +...+.++..
T Consensus        48 i~~~~~eL~~   57 (343)
T PRK09039         48 ISGKDSALDR   57 (343)
T ss_pred             HhhHHHHHHH
Confidence            3333333333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.95  E-value=0.69  Score=48.87  Aligned_cols=61  Identities=21%  Similarity=0.384  Sum_probs=24.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          351 RGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESS  411 (748)
Q Consensus       351 ~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~  411 (748)
                      ..++..++..+.........++..+..++.++..+..++......+..+...|..+...+.
T Consensus        44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~  104 (420)
T COG4942          44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN  104 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence            3334444444444344444444444444444333333333333333333333333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.93  E-value=0.24  Score=44.05  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 047747          568 QVDTLQQELESLRGQKAVLEVQLEEKTREISEYI  601 (748)
Q Consensus       568 ~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~  601 (748)
                      .+...+...+.+...+.+++.++.........+.
T Consensus        11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~   44 (140)
T PF10473_consen   11 KLKESESEKDSLEDHVESLERELEMSQENKECLI   44 (140)
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3334444444444444444444444433333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=96.91  E-value=0.82  Score=49.15  Aligned_cols=53  Identities=13%  Similarity=0.135  Sum_probs=29.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          207 LDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNL  259 (748)
Q Consensus       207 l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~~l~~~  259 (748)
                      +......+..++..+..+...+..+...-.+....+..+...|..+.+.+...
T Consensus       106 i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n  158 (570)
T COG4477         106 IDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLAN  158 (570)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            33344444444444555555555555555555666666666666666666543

>PRK09039 hypothetical protein; Validated

Probab=96.89  E-value=0.26  Score=51.90  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=11.0

Q ss_pred             HHHHHHHHHhHhhHHHHHHHH
Q 047747          527 TAQINDLLADLDSLHNEKSKL  547 (748)
Q Consensus       527 ~~~i~~l~~el~~l~~~~~~l  547 (748)
                      ..++.....++..++.++..+
T Consensus        45 s~~i~~~~~eL~~L~~qIa~L   65 (343)
T PRK09039         45 SREISGKDSALDRLNSQIAEL   65 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHHH
Confidence            444555555555555555554

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.84  E-value=0.00028  Score=82.34  Aligned_cols=19  Identities=5%  Similarity=0.211  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 047747           62 LIEGFHSQYQSLYAQYDNL   80 (748)
Q Consensus        62 ~~~e~~~~~~~l~~~~~~~   80 (748)
                      .+..|...|+.+..-|...
T Consensus        68 r~~NLk~l~~~i~~yy~e~   86 (713)
T PF05622_consen   68 RVSNLKKLLRNIKSYYQEE   86 (713)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555666666666655543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.80  E-value=0.34  Score=43.12  Aligned_cols=45  Identities=27%  Similarity=0.414  Sum_probs=17.0

Q ss_pred             hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          450 TGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDL  494 (748)
Q Consensus       450 ~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l  494 (748)
                      ..|..++..+...+..+..++..++.+...+...+...+.++..+
T Consensus        55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL   99 (140)
T PF10473_consen   55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL   99 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.80  E-value=1.6  Score=50.77  Aligned_cols=77  Identities=13%  Similarity=0.248  Sum_probs=34.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747          351 RGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQ----QAQNLIQDLMAESSQLKEKMVEKEREVSS  426 (748)
Q Consensus       351 ~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~----~l~~~i~~l~~~~~~l~~~l~~le~e~~~  426 (748)
                      ...+..++.++..+......+...+..+...++.+..++..+...+.    .+..+...+..++..+...+......+..
T Consensus       208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~  287 (650)
T TIGR03185       208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRE  287 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444433332    22233444455555555555544444444


Q ss_pred             H
Q 047747          427 L  427 (748)
Q Consensus       427 l  427 (748)
                      +
T Consensus       288 l  288 (650)
T TIGR03185       288 L  288 (650)
T ss_pred             H
Confidence            3

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=1.3  Score=49.37  Aligned_cols=25  Identities=20%  Similarity=-0.040  Sum_probs=17.8

Q ss_pred             hccCCCCceeeeccCcchhhccccc
Q 047747          720 RNGAGAGSCLVLHSPYSKIILMDEK  744 (748)
Q Consensus       720 l~~lG~~~~~~~~~~~~~~~~~~~~  744 (748)
                      |-.+..++-+-|.|..--||++++.
T Consensus       699 ly~FeaRs~dEisf~pGDII~V~es  723 (1118)
T KOG1029|consen  699 LYPFEARSHDEISFEPGDIIIVFES  723 (1118)
T ss_pred             ecccccCCcccccccCCCEEEEehh
Confidence            4445667777788888888888764

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.66  E-value=0.89  Score=45.99  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=12.8

Q ss_pred             HHHHHHHhHhhHHHHHHHHHHHhhhh
Q 047747          529 QINDLLADLDSLHNEKSKLEEHMVFK  554 (748)
Q Consensus       529 ~i~~l~~el~~l~~~~~~l~~~l~~l  554 (748)
                      .+..+...+..++.+...|..+...+
T Consensus       161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L  186 (306)
T PF04849_consen  161 QLEALQEKLKSLEEENEQLRSEASQL  186 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555555555555555554444333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.66  E-value=1.4  Score=48.42  Aligned_cols=17  Identities=6%  Similarity=0.171  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHhHHHHH
Q 047747          677 LEKTLTERGSELSSLQE  693 (748)
Q Consensus       677 le~~~~~~~~~l~~l~~  693 (748)
                      +...+..+....+.+..
T Consensus       909 ~~~~ledL~qRy~a~Lq  925 (961)
T KOG4673|consen  909 IKAELEDLRQRYAAALQ  925 (961)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.61  E-value=1.6  Score=48.19  Aligned_cols=33  Identities=30%  Similarity=0.383  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047747          196 LTVENAELNQKLDAAGKIEAELNREVSDMKRQL  228 (748)
Q Consensus       196 l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l  228 (748)
                      ....+..+..++..+.++.+.+..++..++..+
T Consensus       407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~el  439 (961)
T KOG4673|consen  407 YHQRVATLEKKVQALTKERDALRREQKSLKKEL  439 (961)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.58  E-value=0.034  Score=53.52  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHh
Q 047747           60 VELIEGFHSQYQSLYAQYDNLRGEL   84 (748)
Q Consensus        60 ~~~~~e~~~~~~~l~~~~~~~~~~~   84 (748)
                      .....+|+-.|..|.++-+.+....
T Consensus        16 e~~~~~li~ay~~L~d~~~~l~~~~   40 (194)
T PF08614_consen   16 EKAFAELIDAYNRLADRTSLLKAEN   40 (194)
T ss_dssp             -------------------------
T ss_pred             ccccccccccccccccccccccccc
Confidence            3455567777777777766665443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.56  E-value=1.1  Score=45.81  Aligned_cols=136  Identities=18%  Similarity=0.194  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhh-hhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 047747          519 SLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD-DEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREI  597 (748)
Q Consensus       519 ~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~-~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~  597 (748)
                      +..++..+...+.+++.++.-+...+........... ...-.....+-.++..++.++..+...+..+..+...+..+.
T Consensus        84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER  163 (319)
T PF09789_consen   84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER  163 (319)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444332222222 111133344445555556666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 047747          598 SEYIIEVQILKEEIVNKT-------EVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMR  654 (748)
Q Consensus       598 ~~~~~~l~~l~~~l~~~~-------~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~  654 (748)
                      ..+......+..++.-+-       ..++.+..+..-+..++..++.+..-+..-+...+.-+.
T Consensus       164 D~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le  227 (319)
T PF09789_consen  164 DAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE  227 (319)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666554421       124455555555566666665555555554444444333

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=96.54  E-value=1.5  Score=47.20  Aligned_cols=15  Identities=27%  Similarity=0.275  Sum_probs=9.9

Q ss_pred             hhHHHHHHhhhHhhhHH
Q 047747          275 AVNAELKQKLSIAGELE  291 (748)
Q Consensus       275 ~~~~~Lk~~~~~~gr~t  291 (748)
                      .+|-+|++..  -+|++
T Consensus        17 ~~g~~lRkk~--~~rI~   31 (570)
T COG4477          17 AVGYLLRKKN--YQRID   31 (570)
T ss_pred             HHHHHHHHhH--HHHHH
Confidence            3456777777  66665

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.44  E-value=0.77  Score=42.59  Aligned_cols=74  Identities=18%  Similarity=0.193  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHH
Q 047747          618 QQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSL  691 (748)
Q Consensus       618 ~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l  691 (748)
                      +..+...-..+....+.....+..+...+.+...+-.|.+..+..|...+..++..+.............++..
T Consensus       125 lk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~  198 (205)
T KOG1003|consen  125 LKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET  198 (205)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33333333444444444455555555555555555555555555555555555555554444444444444433

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=96.43  E-value=0.94  Score=43.48  Aligned_cols=36  Identities=11%  Similarity=-0.001  Sum_probs=14.2

Q ss_pred             HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047747          449 VTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEEN  484 (748)
Q Consensus       449 l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~  484 (748)
                      +..+..+.+.+...+..++..+..+...+..++..+
T Consensus        71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi  106 (207)
T PF05010_consen   71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVI  106 (207)
T ss_pred             HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            333333333344444444444444444433333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.42  E-value=1.4  Score=45.24  Aligned_cols=6  Identities=17%  Similarity=0.030  Sum_probs=3.0

Q ss_pred             HhHHHH
Q 047747          334 DQLNEE  339 (748)
Q Consensus       334 g~l~~~  339 (748)
                      |.++..
T Consensus        51 G~liSA   56 (499)
T COG4372          51 GMLISA   56 (499)
T ss_pred             cchhhH
Confidence            555543

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.38  E-value=1.4  Score=45.07  Aligned_cols=27  Identities=11%  Similarity=0.168  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047747          401 NLIQDLMAESSQLKEKMVEKEREVSSL  427 (748)
Q Consensus       401 ~~i~~l~~~~~~l~~~l~~le~e~~~l  427 (748)
                      -+++++..++..+..++...+.+....
T Consensus        74 fqlddi~~qlr~~rtel~~a~~~k~~~  100 (499)
T COG4372          74 FQLDDIRPQLRALRTELGTAQGEKRAA  100 (499)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555555555444443333

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.35  E-value=2.4  Score=47.29  Aligned_cols=33  Identities=15%  Similarity=0.028  Sum_probs=18.4

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhh
Q 047747          666 EKLGLLDGIFELEKTLTERGSELSSLQEKHINV  698 (748)
Q Consensus       666 ~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~  698 (748)
                      ++..+...+..++..+.+++.-|..-...|...
T Consensus       601 ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~a  633 (716)
T KOG4593|consen  601 EVAQLKKEVESAEKRNQRLKEVFASKIQEFRDA  633 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555666666666665555555555443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.32  E-value=2.8  Score=47.86  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHhhh
Q 047747           65 GFHSQYQSLYAQYDNLRGELKK   86 (748)
Q Consensus        65 e~~~~~~~l~~~~~~~~~~~~~   86 (748)
                      ++-+.|.-|.+.|..+...+.+
T Consensus        90 ~l~r~w~~ls~~Yg~lI~~Y~k  111 (980)
T KOG0980|consen   90 QLGRMWGHLSDGYGPLIRAYVK  111 (980)
T ss_pred             HHHHHhccccccchHHHHHHHH
Confidence            3344444444445444444443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.30  E-value=1.9  Score=45.68  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 047747          466 MVVQIDSKAAAAKQLEEENLQL  487 (748)
Q Consensus       466 l~~~l~~~~~~~~~l~~~~~~l  487 (748)
                      +...+......+..+...|.++
T Consensus        78 ~~~ql~~s~~~l~~~~~~I~~~   99 (420)
T COG4942          78 LEAQLIETADDLKKLRKQIADL   99 (420)
T ss_pred             HHHHHHHHHhHHHHHHhhHHHH
Confidence            3333333333333333333333

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.19  E-value=3.6  Score=47.83  Aligned_cols=37  Identities=19%  Similarity=0.132  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 047747          624 EIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEG  660 (748)
Q Consensus       624 ~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~  660 (748)
                      .+..+...+..+...+..+..++..++..+..++.++
T Consensus       429 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  465 (650)
T TIGR03185       429 ELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL  465 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.03  E-value=1.9  Score=43.08  Aligned_cols=117  Identities=16%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047747          565 LMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGN  644 (748)
Q Consensus       565 l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~  644 (748)
                      +...+...+..+..+...+......+.....-++.++..+......+..+..-+..-...+.....              
T Consensus       149 LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~--------------  214 (305)
T PF14915_consen  149 LSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG--------------  214 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------
Confidence            333444444444444444444444444444444444444444444444432222222222222222              


Q ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 047747          645 QKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKH  695 (748)
Q Consensus       645 e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l  695 (748)
                      .-..+++++..+..+..-|+.++.+.......-+..+..++..|..+...+
T Consensus       215 Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L  265 (305)
T PF14915_consen  215 KQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKL  265 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            223334444444444444444444444444444444444444444444443

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.03  E-value=3.2  Score=45.75  Aligned_cols=29  Identities=17%  Similarity=-0.008  Sum_probs=11.4

Q ss_pred             HHHHHhhcchHhhhccCCCCceeeeccCc
Q 047747          707 TAMAAQASLPQISRNGAGAGSCLVLHSPY  735 (748)
Q Consensus       707 ~~l~~~i~~Lk~~l~~lG~~~~~~~~~~~  735 (748)
                      ..+...+...+.-+.++..+-..+..+|+
T Consensus       414 ~el~~~~~~~ke~i~klE~dl~~~~~~~~  442 (629)
T KOG0963|consen  414 EELEAKATEQKELIAKLEQDLLKVQVSPP  442 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHhhHhhcccCCC
Confidence            33444444444444444333333333333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.03  E-value=1.2  Score=46.79  Aligned_cols=58  Identities=17%  Similarity=0.332  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          441 QIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLT  498 (748)
Q Consensus       441 ~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l  498 (748)
                      .+..++.++..+...+...+..+..++.++..+...+..+......+..++..++...
T Consensus       210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~  267 (325)
T PF08317_consen  210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR  267 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555555555554444444444444444444444433

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.99  E-value=5.1  Score=47.71  Aligned_cols=8  Identities=0%  Similarity=0.185  Sum_probs=3.9

Q ss_pred             cccccccc
Q 047747            6 FRESIKSF   13 (748)
Q Consensus         6 ~~~~~~~~   13 (748)
                      .+..--||
T Consensus       258 yG~ecDwW  265 (1317)
T KOG0612|consen  258 YGRECDWW  265 (1317)
T ss_pred             cCCccchh
Confidence            34444566

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.90  E-value=3.6  Score=45.31  Aligned_cols=33  Identities=27%  Similarity=0.315  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q 047747          519 SLSRIENLTAQINDLLADLDSLHNEKSKLEEHM  551 (748)
Q Consensus       519 ~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l  551 (748)
                      +...+.....+|..+..++......+.++..++
T Consensus       308 ~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL  340 (629)
T KOG0963|consen  308 LVEEREKHKAQISALEKELKAKISELEELKEKL  340 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444433

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.89  E-value=1.7  Score=41.47  Aligned_cols=28  Identities=18%  Similarity=0.487  Sum_probs=13.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047747          346 ELETLRGKISNMEQQLESSKQEVSDLSQ  373 (748)
Q Consensus       346 ei~~l~~~l~~le~~l~~~~~~l~~l~~  373 (748)
                      .|..|..++..+...+..+..+..-|..
T Consensus        13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~   40 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELRKENKTLKQ   40 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555554444444433

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.79  E-value=6.8  Score=47.62  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=11.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          128 KTTDGMKQELDAATLEVSELKRRMT  152 (748)
Q Consensus       128 ~~~~~lk~~l~~~~~ei~~l~~~l~  152 (748)
                      ..+..+......+...+..+...+.
T Consensus       171 ~~~~~l~e~~~~~~~~~e~l~~~~~  195 (908)
T COG0419         171 KLSELLKEVIKEAKAKIEELEGQLS  195 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444445555554444

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.69  E-value=2.1  Score=41.10  Aligned_cols=51  Identities=14%  Similarity=0.139  Sum_probs=20.9

Q ss_pred             HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          448 QVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLT  498 (748)
Q Consensus       448 el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l  498 (748)
                      .+..++.....+......+..-+..+...-..|...+.++...+...+..+
T Consensus        84 dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry  134 (207)
T PF05010_consen   84 DLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRY  134 (207)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444444444444444433444444444444444443333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.60  E-value=7.8  Score=46.99  Aligned_cols=83  Identities=19%  Similarity=0.269  Sum_probs=42.5

Q ss_pred             CCCCccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          117 NKNGELE-SEYQKTTDGMKQELDAATLEVSELKRRMTATSEEK---EALNLEYQSALSRIQEAGELIRNLKLEAESLNTE  192 (748)
Q Consensus       117 ~~~~~~~-~~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~ek---e~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~  192 (748)
                      .|+..|. ..|.+....++.-......++...+..+..+..-+   ..+...++.....+.....+...+..++......
T Consensus       173 kfD~IF~~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~  252 (1294)
T KOG0962|consen  173 KFDDIFSATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAK  252 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4444444 45666666666665555566666666665554433   3333334444444444444444444444444444


Q ss_pred             HhHHHHH
Q 047747          193 KLKLTVE  199 (748)
Q Consensus       193 ~~~l~~e  199 (748)
                      +..+...
T Consensus       253 i~ei~~~  259 (1294)
T KOG0962|consen  253 IEEIEKS  259 (1294)
T ss_pred             HHHHHHH
Confidence            4444443

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.50  E-value=6.9  Score=45.70  Aligned_cols=103  Identities=15%  Similarity=0.175  Sum_probs=50.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047747          126 YQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQ  205 (748)
Q Consensus       126 ~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~  205 (748)
                      |...++.++.++.++..++.++......+..++..+..++......+.+....+...-..+...+..+..+...+..+..
T Consensus       253 ~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~  332 (1072)
T KOG0979|consen  253 YKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKK  332 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555666666666666666666665555555555555555444444444444444444444444444444444


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHH
Q 047747          206 KLDAAGKIEAELNREVSDMKRQL  228 (748)
Q Consensus       206 ~l~~~~~~~~~l~~~l~~l~~~l  228 (748)
                      .-......+..+...+..++..+
T Consensus       333 ~~~~rq~~i~~~~k~i~~~q~el  355 (1072)
T KOG0979|consen  333 AAEKRQKRIEKAKKMILDAQAEL  355 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            33333333333333333333333

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.39  E-value=6  Score=44.30  Aligned_cols=14  Identities=7%  Similarity=0.062  Sum_probs=7.4

Q ss_pred             HHHHHHhhcchHhh
Q 047747          706 ITAMAAQASLPQIS  719 (748)
Q Consensus       706 ~~~l~~~i~~Lk~~  719 (748)
                      +..|...+..|+..
T Consensus       561 ~e~LqaE~~~lk~~  574 (716)
T KOG4593|consen  561 LEELQAELERLKER  574 (716)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34455555555553

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.25  E-value=4.7  Score=45.36  Aligned_cols=21  Identities=19%  Similarity=0.438  Sum_probs=10.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHH
Q 047747          352 GKISNMEQQLESSKQEVSDLS  372 (748)
Q Consensus       352 ~~l~~le~~l~~~~~~l~~l~  372 (748)
                      .++..++.++..++..+..+.
T Consensus       168 ~ql~~~~~~L~~ae~~l~~f~  188 (498)
T TIGR03007       168 EQIKTYEKKLEAAENRLKAFK  188 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555444444443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.23  E-value=3.8  Score=42.38  Aligned_cols=57  Identities=11%  Similarity=0.161  Sum_probs=27.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          442 IKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLT  498 (748)
Q Consensus       442 ~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l  498 (748)
                      +..++..+.....++......+..++.++..+...+........++...+..++..+
T Consensus       206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~  262 (312)
T smart00787      206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444555445555444444444544544444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.84  E-value=6.4  Score=41.66  Aligned_cols=30  Identities=13%  Similarity=0.284  Sum_probs=14.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhHHHHHHHH
Q 047747          441 QIKELQAQVTGLELELESLQAHNRDMVVQI  470 (748)
Q Consensus       441 ~~~~~e~el~~l~~~~~~l~~~l~~l~~~l  470 (748)
                      ++....++...|..++..+..+...|...+
T Consensus       369 ~fe~mn~Ere~L~reL~~i~~~~~~L~k~V  398 (622)
T COG5185         369 QFELMNQEREKLTRELDKINIQSDKLTKSV  398 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            344444444455555554444444444443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.09  E-value=8.9  Score=40.22  Aligned_cols=15  Identities=7%  Similarity=0.189  Sum_probs=8.7

Q ss_pred             HHHHHHHHhhcchHh
Q 047747          704 AQITAMAAQASLPQI  718 (748)
Q Consensus       704 ~~~~~l~~~i~~Lk~  718 (748)
                      .++..|+..+..|+.
T Consensus       276 ~Ev~~Lk~~~~~Le~  290 (325)
T PF08317_consen  276 SEVKRLKAKVDALEK  290 (325)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            355566666666655

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=93.80  E-value=14  Score=41.53  Aligned_cols=33  Identities=9%  Similarity=0.040  Sum_probs=13.8

Q ss_pred             HHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHH
Q 047747          651 EQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTE  683 (748)
Q Consensus       651 ~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~  683 (748)
                      +.+..++..+.+.+.+..+..-.+..++.+..+
T Consensus       589 E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~r  621 (739)
T PF07111_consen  589 EQLSEMEKRLNEARREHTKAVVSLRQIQRQAAR  621 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443333334444444433

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=93.80  E-value=7.4  Score=38.23  Aligned_cols=61  Identities=20%  Similarity=0.199  Sum_probs=28.1

Q ss_pred             HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 047747          448 QVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTT  508 (748)
Q Consensus       448 el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l  508 (748)
                      +...|-.....+......+..++......+.-+..++......+..++..+..+..++...
T Consensus        68 Enq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs  128 (307)
T PF10481_consen   68 ENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS  128 (307)
T ss_pred             hhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444444455555555555555555555444444433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.77  E-value=0.9  Score=43.69  Aligned_cols=71  Identities=18%  Similarity=0.352  Sum_probs=10.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          347 LETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKM  417 (748)
Q Consensus       347 i~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l  417 (748)
                      +..+...+..+..++..+......+...+..+...+..++..+......+..+...+..+..++..+...+
T Consensus        69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l  139 (194)
T PF08614_consen   69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEEL  139 (194)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444343333344444444443333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.74  E-value=17  Score=42.35  Aligned_cols=107  Identities=18%  Similarity=0.105  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHH---H--HHhh
Q 047747          623 EEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQ---E--KHIN  697 (748)
Q Consensus       623 ~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~---~--~l~~  697 (748)
                      .++.........+...+..+..+...+...+..++.++..-+....++......++.++.+....-....   .  ++..
T Consensus       652 ~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kq  731 (769)
T PF05911_consen  652 TQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQ  731 (769)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccch
Confidence            3344444444444444444555555555555555555555555555555555566555555533221111   1  1111


Q ss_pred             h-h-hhhhHHHHHHHHhhcchHhhhccCCCCcee
Q 047747          698 V-E-NKASAQITAMAAQASLPQISRNGAGAGSCL  729 (748)
Q Consensus       698 ~-~-~~a~~~~~~l~~~i~~Lk~~l~~lG~~~~~  729 (748)
                      . + ..|.+.+.+=+..|..|-++|.++.|-...
T Consensus       732 e~EiaaAA~KLAECQeTI~sLGkQLksLa~~~d~  765 (769)
T PF05911_consen  732 EKEIAAAAEKLAECQETIASLGKQLKSLATPEDF  765 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence            1 1 456778888899999999999988765443

The function of this family is unknown.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=93.56  E-value=6.7  Score=37.04  Aligned_cols=38  Identities=16%  Similarity=0.157  Sum_probs=14.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          573 QQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEE  610 (748)
Q Consensus       573 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  610 (748)
                      +.+...+...+..-..++..+..........+...+..
T Consensus        48 kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK   85 (177)
T PF13870_consen   48 KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK   85 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.52  E-value=5.5  Score=38.16  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          132 GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQS  167 (748)
Q Consensus       132 ~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~  167 (748)
                      .....+.....++..+...+..+..+...+...+..
T Consensus        85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~  120 (191)
T PF04156_consen   85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQE  120 (191)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444444433333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=93.40  E-value=4.4  Score=39.72  Aligned_cols=62  Identities=16%  Similarity=0.054  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHH
Q 047747          622 LEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTE  683 (748)
Q Consensus       622 ~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~  683 (748)
                      ..+...+....+.++.....+..++.-.+..+.+++.++......++.+...+..+...+.+
T Consensus        66 kREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr  127 (307)
T PF10481_consen   66 KRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER  127 (307)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444444444444444444443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.15  E-value=18  Score=40.69  Aligned_cols=29  Identities=10%  Similarity=0.249  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 047747          522 RIENLTAQINDLLADLDSLHNEKSKLEEH  550 (748)
Q Consensus       522 ~i~~l~~~i~~l~~el~~l~~~~~~l~~~  550 (748)
                      .+..+...+...+.++...+..+..+...
T Consensus       205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~  233 (498)
T TIGR03007       205 EISEAQEELEAARLELNEAIAQRDALKRQ  233 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=92.95  E-value=19  Score=40.47  Aligned_cols=8  Identities=25%  Similarity=0.343  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 047747          649 LEEQMRLK  656 (748)
Q Consensus       649 l~~~~~~l  656 (748)
                      ++.++..+
T Consensus       390 lE~rl~~l  397 (511)
T PF09787_consen  390 LESRLTQL  397 (511)
T ss_pred             HHHHHhhc
Confidence            33333333

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.42  E-value=6.8  Score=34.06  Aligned_cols=8  Identities=25%  Similarity=0.310  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 047747          484 NLQLQARI  491 (748)
Q Consensus       484 ~~~l~~~l  491 (748)
                      +.+++..+
T Consensus        98 veEL~~Dv  105 (120)
T PF12325_consen   98 VEELRADV  105 (120)
T ss_pred             HHHHHHHH
Confidence            33333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.36  E-value=33  Score=41.79  Aligned_cols=21  Identities=5%  Similarity=0.180  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHhhhHHHhhh
Q 047747           66 FHSQYQSLYAQYDNLRGELKK   86 (748)
Q Consensus        66 ~~~~~~~l~~~~~~~~~~~~~   86 (748)
                      |...|..+++.+..+......
T Consensus       169 ~e~~~~~l~e~~~~~~~~~e~  189 (908)
T COG0419         169 YEKLSELLKEVIKEAKAKIEE  189 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455555666666655544443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=92.28  E-value=20  Score=39.15  Aligned_cols=15  Identities=20%  Similarity=0.275  Sum_probs=5.9

Q ss_pred             HHhHHHHHHHHHHHH
Q 047747          353 KISNMEQQLESSKQE  367 (748)
Q Consensus       353 ~l~~le~~l~~~~~~  367 (748)
                      ++..++.++..+...
T Consensus        82 ~l~~l~~~~~~l~a~   96 (423)
T TIGR01843        82 DAAELESQVLRLEAE   96 (423)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333444444433333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=92.08  E-value=20  Score=38.66  Aligned_cols=101  Identities=12%  Similarity=0.117  Sum_probs=53.8

Q ss_pred             HhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          562 VKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVAS  641 (748)
Q Consensus       562 ~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~  641 (748)
                      ...+..++...+.++..+.+.+.....++.....+...+..++..+...+..+.-..+.+..-+......-..+..+..+
T Consensus       200 y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~E  279 (596)
T KOG4360|consen  200 YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEE  279 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33455555666666666666666665555555555555555555555555444333333333444444444555555555


Q ss_pred             hhhhHHHHHHHHHHHHHhhhh
Q 047747          642 LGNQKSDLEEQMRLKIEEGFH  662 (748)
Q Consensus       642 l~~e~~~l~~~~~~le~e~~~  662 (748)
                      ++..|.++...+...+.++..
T Consensus       280 leDkyAE~m~~~~EaeeELk~  300 (596)
T KOG4360|consen  280 LEDKYAECMQMLHEAEEELKC  300 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            555555555555555554443

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.04  E-value=12  Score=36.06  Aligned_cols=36  Identities=19%  Similarity=0.355  Sum_probs=17.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 047747          346 ELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEE  381 (748)
Q Consensus       346 ei~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~  381 (748)
                      -|..|..++..+..........+..+..+...+...
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~ep   63 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEP   63 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            345555555555555554444444444443333333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=91.87  E-value=17  Score=37.42  Aligned_cols=41  Identities=17%  Similarity=0.256  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047747          388 KISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLV  428 (748)
Q Consensus       388 ~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~  428 (748)
                      .+.-+..++...+.+.+.++.-++.++.....+......+.
T Consensus        10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~   50 (319)
T PF09789_consen   10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI   50 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455666666666666666666666666666555544443

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=91.53  E-value=16  Score=38.94  Aligned_cols=14  Identities=21%  Similarity=0.422  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHhhcc
Q 047747           33 IEDKFKKILKLVQD   46 (748)
Q Consensus        33 ~~~~~~~~~~~~~~   46 (748)
                      =|+.|..-|||...
T Consensus        27 rd~nv~eyLkl~~~   40 (395)
T PF10267_consen   27 RDENVAEYLKLASN   40 (395)
T ss_pred             HHhhHHHHHHHhhh
Confidence            45666777777665

Its function is unknown.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.48  E-value=21  Score=37.79  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=12.7

Q ss_pred             HHHHhhHHHHHHHHHHhHHHHHHHHHH
Q 047747          446 QAQVTGLELELESLQAHNRDMVVQIDS  472 (748)
Q Consensus       446 e~el~~l~~~~~~l~~~l~~l~~~l~~  472 (748)
                      ...+++|...+......+..+...++.
T Consensus       292 eayLaKL~~~l~~~~~~~~~ltqqwed  318 (521)
T KOG1937|consen  292 EAYLAKLMGKLAELNKQMEELTQQWED  318 (521)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444455444444444444444

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=91.48  E-value=37  Score=40.47  Aligned_cols=27  Identities=7%  Similarity=0.219  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 047747          523 IENLTAQINDLLADLDSLHNEKSKLEE  549 (748)
Q Consensus       523 i~~l~~~i~~l~~el~~l~~~~~~l~~  549 (748)
                      +..+..++...+.+....+.....+..
T Consensus       239 L~~l~~ql~~a~~~~~~a~a~~~~l~~  265 (754)
T TIGR01005       239 LAELNTELSRARANRAAAEGTADSVKK  265 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444433

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.43  E-value=29  Score=39.21  Aligned_cols=54  Identities=13%  Similarity=0.197  Sum_probs=27.0

Q ss_pred             HHHHHHHhhHHhHHHHHHH---hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhH
Q 047747          324 KIAEDLRNSADQLNEEKLV---LGKELETLRGKISNMEQQLESSKQEVSDLSQNLTA  377 (748)
Q Consensus       324 ~~Vt~L~~l~g~l~~~~g~---~~~ei~~l~~~l~~le~~l~~~~~~l~~l~~~l~~  377 (748)
                      ..|..|+.-.|+.+.+...   ...+-..|...+..|+.+.+.+...+.-+.-.+..
T Consensus       218 tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS  274 (739)
T PF07111_consen  218 TLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQS  274 (739)
T ss_pred             HHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666667776643321   12333445555555555555555444444444333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.42  E-value=4.6  Score=42.02  Aligned_cols=76  Identities=26%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          170 SRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTA  245 (748)
Q Consensus       170 ~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~  245 (748)
                      ..+..++.+...+..++..++.+...+..++..+......+.............+.-.+.....+...+..++.-.
T Consensus        50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~  125 (314)
T PF04111_consen   50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA  125 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444444444444444444444444444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.32  E-value=25  Score=38.26  Aligned_cols=113  Identities=17%  Similarity=0.244  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhH-
Q 047747          439 LAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANES-  517 (748)
Q Consensus       439 ~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~~~~~-  517 (748)
                      ...|...+.+...|...+..++..+.+....+-.++.....|....-....++..++.-+.....++..+..++..... 
T Consensus       330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~  409 (654)
T KOG4809|consen  330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI  409 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455566666666777777777666666666666666666666666666666666666666666666666666553322 


Q ss_pred             --------hHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q 047747          518 --------ESLSRIENLTAQINDLLADLDSLHNEKSKLEEHM  551 (748)
Q Consensus       518 --------~~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l  551 (748)
                              +....+..+...+...+.++....+....+-.-+
T Consensus       410 ~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeil  451 (654)
T KOG4809|consen  410 EDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEIL  451 (654)
T ss_pred             hHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    1255666677777777777666666666554333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=90.94  E-value=24  Score=37.38  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          137 LDAATLEVSELKRRMTATSEEKEA  160 (748)
Q Consensus       137 l~~~~~ei~~l~~~l~~l~~eke~  160 (748)
                      +......+..++..+...+.....
T Consensus        10 L~et~~~V~~m~~~L~~~~~~L~~   33 (344)
T PF12777_consen   10 LKETEEQVEEMQEELEEKQPELEE   33 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555554444333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.93  E-value=10  Score=33.03  Aligned_cols=17  Identities=29%  Similarity=0.565  Sum_probs=7.1

Q ss_pred             HHHHHHHHhHHHHHHHH
Q 047747          347 LETLRGKISNMEQQLES  363 (748)
Q Consensus       347 i~~l~~~l~~le~~l~~  363 (748)
                      +..+...+..++.++..
T Consensus        18 ve~L~s~lr~~E~E~~~   34 (120)
T PF12325_consen   18 VERLQSQLRRLEGELAS   34 (120)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444444

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.74  E-value=14  Score=36.38  Aligned_cols=45  Identities=13%  Similarity=0.083  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 047747          171 RIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEA  215 (748)
Q Consensus       171 ~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~  215 (748)
                      .+.++..+++.|..+...+...+.....++..+...+..++....
T Consensus        33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~   77 (230)
T PF10146_consen   33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN   77 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455544444444444444444444444333333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF13514 AAA_27: AAA domain

Probab=90.67  E-value=54  Score=40.99  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=19.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          126 YQKTTDGMKQELDAATLEVSELKRRMTATSEEKEA  160 (748)
Q Consensus       126 ~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~  160 (748)
                      ....+..+..++..+...+..+...+..+..+.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  274 (1111)
T PF13514_consen  240 GAERLEQLEEELAEAQAQLERLQEELAQLEEELDA  274 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455555555556555565555555555554443

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=90.64  E-value=0.54  Score=47.87  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 047747          345 KELETLRGKISNMEQQLESSKQEVSDL  371 (748)
Q Consensus       345 ~ei~~l~~~l~~le~~l~~~~~~l~~l  371 (748)
                      +.+..+.+++..|+.....+...+..+
T Consensus        28 GDLs~I~eRLsaLEssv~sL~~SVs~l   54 (326)
T PF04582_consen   28 GDLSPIRERLSALESSVASLSDSVSSL   54 (326)
T ss_dssp             ---------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444433333333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.39  E-value=30  Score=37.63  Aligned_cols=158  Identities=16%  Similarity=0.183  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcc-CCCCCCCCCCCCCCCCCCCCccccccCCCCCccc--hhhhhhHHHH
Q 047747           57 EPLVELIEGFHSQYQSLYAQYDNLRGELKKKIH-GKKENETYSSSSSDSDSDSDHSSKNKSNKNGELE--SEYQKTTDGM  133 (748)
Q Consensus        57 ~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l  133 (748)
                      |....-|+.|.-....|.+-|+..+.+.-++.. |.                    .        .+.  ......+..+
T Consensus         4 ~~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL--------------------~--------lLeeK~~Lkqq~eEl   55 (772)
T KOG0999|consen    4 PMAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGL--------------------E--------LLEEKEDLKQQLEEL   55 (772)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------H--------HHHHHHHHHHHHHHH
Confidence            445555666666666777777777776655431 11                    0        000  1123334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047747          134 KQELDAATLEVSELKRRMTATSEEKEAL--------NLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQ  205 (748)
Q Consensus       134 k~~l~~~~~ei~~l~~~l~~l~~eke~l--------~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~  205 (748)
                      ...++.+..+++.++..+..........        ..-++....+-..+-..|-+++.+++.+...+...+.+...+..
T Consensus        56 eaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~  135 (772)
T KOG0999|consen   56 EAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEK  135 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444445555554444433221111        11122222222333344555555555555555555555555555


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          206 KLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEY  242 (748)
Q Consensus       206 ~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l  242 (748)
                      ....+.......+.+...++..+....-.-..+-..|
T Consensus       136 ~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseY  172 (772)
T KOG0999|consen  136 VHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEY  172 (772)
T ss_pred             HHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444444444444455555444433333333333

>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins

Probab=90.26  E-value=0.019  Score=50.57  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=29.1

Q ss_pred             HHHHhHHHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhHh
Q 047747          262 EAESLNNDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDISR  303 (748)
Q Consensus       262 el~~~~~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~  303 (748)
                      +++.++++|..||+.+                    .++++.+  .||+|   |+|++.+..
T Consensus        10 dli~v~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~--~gr~~---~i~l~~~~~   66 (120)
T PF06470_consen   10 DLIEVDPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENK--LGRAT---FIPLDKIRS   66 (120)
T ss_dssp             GSEEESGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTT--SCEEE---EEETTTTGG
T ss_pred             hceecCHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhcc--CCeEE---EEECccccc
Confidence            4556677788887763                    7888877  99999   999998764

The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=89.69  E-value=33  Score=37.06  Aligned_cols=33  Identities=24%  Similarity=0.192  Sum_probs=12.1

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          579 LRGQKAVLEVQLEEKTREISEYIIEVQILKEEI  611 (748)
Q Consensus       579 l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l  611 (748)
                      .+.++..+...+..+..++.....++..+...|
T Consensus       210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql  242 (596)
T KOG4360|consen  210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQL  242 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=89.46  E-value=19  Score=33.96  Aligned_cols=46  Identities=11%  Similarity=0.134  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          440 AQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENL  485 (748)
Q Consensus       440 ~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~  485 (748)
                      ..|.+++-+...+...+++-..++..+.......-..+...+..+.
T Consensus        42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~   87 (177)
T PF13870_consen   42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH   87 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555444444444444443333333333333333

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=89.44  E-value=27  Score=35.86  Aligned_cols=47  Identities=15%  Similarity=0.128  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          130 TDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAG  176 (748)
Q Consensus       130 ~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le  176 (748)
                      +..++..+...+.......-..+.|-.++..+.=++..+...+.+++
T Consensus        79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~e  125 (302)
T PF09738_consen   79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELE  125 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555444444444444444444444444333333333333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.36  E-value=15  Score=36.08  Aligned_cols=13  Identities=23%  Similarity=0.166  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q 047747          150 RMTATSEEKEALN  162 (748)
Q Consensus       150 ~l~~l~~eke~l~  162 (748)
                      -+.++..+++.|.
T Consensus        33 ~L~e~~kE~~~L~   45 (230)
T PF10146_consen   33 CLEEYRKEMEELL   45 (230)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=89.24  E-value=26  Score=35.29  Aligned_cols=21  Identities=24%  Similarity=0.170  Sum_probs=7.8

Q ss_pred             hHHHHHHHHHHHHHhhhhHHH
Q 047747          645 QKSDLEEQMRLKIEEGFHLTE  665 (748)
Q Consensus       645 e~~~l~~~~~~le~e~~~l~~  665 (748)
                      .+..|+.-++.+..+..++..
T Consensus       300 kiq~LekLcRALq~ernel~~  320 (391)
T KOG1850|consen  300 KIQRLEKLCRALQTERNELNK  320 (391)
T ss_pred             HHHHHHHHHHHHHhccccHHH
Confidence            333333333333333333333

>PF13514 AAA_27: AAA domain

Probab=88.74  E-value=74  Score=39.80  Aligned_cols=64  Identities=16%  Similarity=0.202  Sum_probs=36.5

Q ss_pred             chhhhhhHHHHHHHHHHHHHhhccCch-hhhccChhh--HHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 047747           23 DEQLKGNKIEIEDKFKKILKLVQDKDL-QEKDGIKEP--LVELIEGFHSQYQSLYAQYDNLRGELKK   86 (748)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~e~~~~~~~l~~~~~~~~~~~~~   86 (748)
                      -+.+...+..+...+..++.-|+.+.+ +.-..+.|.  ....+..+-..+..+...+......+..
T Consensus       305 l~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~  371 (1111)
T PF13514_consen  305 LPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEE  371 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777788888888888888884423 222222222  3344555555566665555555554443

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=88.30  E-value=0.99  Score=46.04  Aligned_cols=51  Identities=14%  Similarity=0.227  Sum_probs=16.9

Q ss_pred             HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          445 LQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLE  495 (748)
Q Consensus       445 ~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~  495 (748)
                      +...+......+..++..+..+...+..++..+....-.+.+++.++..++
T Consensus       103 lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE  153 (326)
T PF04582_consen  103 LSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE  153 (326)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence            333333344444444444444444444444444444444444444444444

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=88.19  E-value=8.2  Score=36.56  Aligned_cols=7  Identities=14%  Similarity=0.482  Sum_probs=2.7

Q ss_pred             HHHHHHH
Q 047747           71 QSLYAQY   77 (748)
Q Consensus        71 ~~l~~~~   77 (748)
                      +-|++.|
T Consensus        72 ReLA~kf   78 (290)
T COG4026          72 RELAEKF   78 (290)
T ss_pred             HHHHHHH
Confidence            3344433

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.12  E-value=19  Score=38.10  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=13.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          577 ESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIV  612 (748)
Q Consensus       577 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~  612 (748)
                      ..++.........+......+..+..+++..+.++.
T Consensus       283 s~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme  318 (359)
T PF10498_consen  283 SEVQEKYKQASEGVSERTRELAEISEELEQVKQEME  318 (359)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333344444444333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>TIGR00634 recN DNA repair protein RecN

Probab=87.77  E-value=56  Score=37.30  Aligned_cols=8  Identities=25%  Similarity=0.555  Sum_probs=3.9

Q ss_pred             hhhccccc
Q 047747          737 KIILMDEK  744 (748)
Q Consensus       737 ~~~~~~~~  744 (748)
                      .++++||.
T Consensus       464 ~~lilDEp  471 (563)
T TIGR00634       464 TTLIFDEV  471 (563)
T ss_pred             CEEEEECC
Confidence            34555553

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.40  E-value=44  Score=35.61  Aligned_cols=30  Identities=20%  Similarity=0.357  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 047747          520 LSRIENLTAQINDLLADLDSLHNEKSKLEE  549 (748)
Q Consensus       520 ~~~i~~l~~~i~~l~~el~~l~~~~~~l~~  549 (748)
                      ...|.++...+.+...++..+..+-.+|..
T Consensus       388 tqrikEi~gniRKq~~DI~Kil~etreLqk  417 (521)
T KOG1937|consen  388 TQRIKEIDGNIRKQEQDIVKILEETRELQK  417 (521)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.38  E-value=16  Score=38.08  Aligned_cols=25  Identities=32%  Similarity=0.275  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHH
Q 047747          175 AGELIRNLKLEAESLNTEKLKLTVE  199 (748)
Q Consensus       175 le~ei~~l~~~~~~l~~~~~~l~~e  199 (748)
                      +..++..+..+...+..++..+..+
T Consensus        48 ~~~el~~le~Ee~~l~~eL~~LE~e   72 (314)
T PF04111_consen   48 LEEELEKLEQEEEELLQELEELEKE   72 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=86.11  E-value=39  Score=33.71  Aligned_cols=13  Identities=23%  Similarity=0.332  Sum_probs=4.7

Q ss_pred             HhHhhHHHHHHHH
Q 047747          535 ADLDSLHNEKSKL  547 (748)
Q Consensus       535 ~el~~l~~~~~~l  547 (748)
                      .++..+.+.+...
T Consensus        88 ~ql~~l~akI~k~  100 (258)
T PF15397_consen   88 QQLEQLDAKIQKT  100 (258)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=85.96  E-value=16  Score=35.21  Aligned_cols=34  Identities=12%  Similarity=0.181  Sum_probs=21.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          124 SEYQKTTDGMKQELDAATLEVSELKRRMTATSEE  157 (748)
Q Consensus       124 ~~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~e  157 (748)
                      ..|...--.++..+..++.++..++.++..+..+
T Consensus        82 ~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~  115 (206)
T PRK10884         82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNT  115 (206)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4444444566666777777777777777665544

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=85.76  E-value=35  Score=32.91  Aligned_cols=17  Identities=18%  Similarity=0.378  Sum_probs=6.4

Q ss_pred             hHHHHHHHHHHHHHHhH
Q 047747          673 GIFELEKTLTERGSELS  689 (748)
Q Consensus       673 ~i~~le~~~~~~~~~l~  689 (748)
                      .+..+...+......+.
T Consensus       151 Kl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen  151 KLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=85.63  E-value=55  Score=35.05  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhhhccCCCCCC
Q 047747           61 ELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENE   95 (748)
Q Consensus        61 ~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   95 (748)
                      .+-+++|.-.+.|-.  |+-.|.+.+.+..-|.+.
T Consensus        51 Tlsed~ysTldnll~--D~ni~ny~qnvl~qP~dT   83 (527)
T PF15066_consen   51 TLSEDIYSTLDNLLG--DNNIGNYSQNVLIQPVDT   83 (527)
T ss_pred             hhhHHHHhhhhhccC--CccccccchhcccCCCCc
Confidence            345566666555544  555555555544444444

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=85.62  E-value=50  Score=35.23  Aligned_cols=8  Identities=25%  Similarity=0.218  Sum_probs=3.7

Q ss_pred             HHHHHHhH
Q 047747          295 NHRLEDIS  302 (748)
Q Consensus       295 ~l~L~~i~  302 (748)
                      ..||+.|.
T Consensus       179 pVCLERMD  186 (493)
T KOG0804|consen  179 PVCLERMD  186 (493)
T ss_pred             chhHhhcC
Confidence            34455444

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=85.47  E-value=12  Score=35.54  Aligned_cols=66  Identities=21%  Similarity=0.287  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 047747          619 QKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTER  684 (748)
Q Consensus       619 ~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~  684 (748)
                      ..+...++.+......+-.++..+..++.++++++..++.+...|...+..+......|.....++
T Consensus       138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL  203 (290)
T COG4026         138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL  203 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence            333334444444444445555555555555555555555555555555544444444444444444

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=85.22  E-value=43  Score=33.47  Aligned_cols=97  Identities=20%  Similarity=0.274  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047747          142 LEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREV  221 (748)
Q Consensus       142 ~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l  221 (748)
                      .....+..++..++.+.......+......+..+......++.....|......+......+.............+..++
T Consensus         5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~   84 (246)
T PF00769_consen    5 REKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQEL   84 (246)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555555555555555544444444444444444444334444444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 047747          222 SDMKRQLTARSEEKEAL  238 (748)
Q Consensus       222 ~~l~~~l~~l~~e~~~~  238 (748)
                      ......+..+.......
T Consensus        85 ~e~~~~i~~l~ee~~~k  101 (246)
T PF00769_consen   85 REAEAEIARLEEESERK  101 (246)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444433333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=84.95  E-value=17  Score=28.55  Aligned_cols=65  Identities=25%  Similarity=0.247  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          174 EAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEAL  238 (748)
Q Consensus       174 ~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~  238 (748)
                      .++..|..+-..+.-+..++.++......+......+......+..+...++.+....+..++.+
T Consensus         8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L   72 (79)
T PRK15422          8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444443

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=84.89  E-value=48  Score=33.76  Aligned_cols=11  Identities=18%  Similarity=-0.091  Sum_probs=5.9

Q ss_pred             HHHHHHHHhhHHhHH
Q 047747          323 EKIAEDLRNSADQLN  337 (748)
Q Consensus       323 ~~~Vt~L~~l~g~l~  337 (748)
                      +.+|.    ..|.++
T Consensus        46 f~~is----s~gwff   56 (401)
T PF06785_consen   46 FSIIS----SLGWFF   56 (401)
T ss_pred             hHHHH----HhHHHH
Confidence            34555    556554

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.85  E-value=56  Score=33.68  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 047747          132 GMKQELDAATLEVSELKRRMTA  153 (748)
Q Consensus       132 ~lk~~l~~~~~ei~~l~~~l~~  153 (748)
                      .++..+..+..+...++.++..
T Consensus        24 ~~~~~l~~~~~~~~~l~~~i~~   45 (302)
T PF10186_consen   24 ELRSELQQLKEENEELRRRIEE   45 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=83.37  E-value=43  Score=31.96  Aligned_cols=8  Identities=25%  Similarity=0.426  Sum_probs=2.8

Q ss_pred             HHHHHHHH
Q 047747          410 SSQLKEKM  417 (748)
Q Consensus       410 ~~~l~~~l  417 (748)
                      +..+...+
T Consensus        89 l~~le~El   96 (202)
T PF06818_consen   89 LGQLEAEL   96 (202)
T ss_pred             hhhhHHHH
Confidence            33333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=83.10  E-value=21  Score=28.09  Aligned_cols=15  Identities=33%  Similarity=0.494  Sum_probs=5.4

Q ss_pred             HhhhhHHHHHHhhhh
Q 047747          658 EEGFHLTEEKLGLLD  672 (748)
Q Consensus       658 ~e~~~l~~~~~~l~~  672 (748)
                      .+...++.+...++.
T Consensus        53 ~en~qLk~E~~~Wqe   67 (79)
T PRK15422         53 RENNHLKEQQNGWQE   67 (79)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=83.02  E-value=70  Score=34.18  Aligned_cols=6  Identities=17%  Similarity=0.080  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 047747          148 KRRMTA  153 (748)
Q Consensus       148 ~~~l~~  153 (748)
                      +..+..
T Consensus       353 k~~~e~  358 (493)
T KOG0804|consen  353 KQYYEL  358 (493)
T ss_pred             HHHHHH
Confidence            333333

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=82.82  E-value=54  Score=32.69  Aligned_cols=54  Identities=17%  Similarity=0.249  Sum_probs=22.0

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          558 ASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEI  611 (748)
Q Consensus       558 ~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l  611 (748)
                      +...+......+..++..+......+..+..........+......+..+...+
T Consensus        83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L  136 (240)
T PF12795_consen   83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQL  136 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444444444444444444444444443333

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=82.29  E-value=50  Score=32.84  Aligned_cols=41  Identities=17%  Similarity=0.306  Sum_probs=25.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747          573 QQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVN  613 (748)
Q Consensus       573 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~  613 (748)
                      ..-+..++.++......++....+|..+..++..+.+.+-+
T Consensus        67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIE  107 (305)
T PF15290_consen   67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIE  107 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666666666666666666665533

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=80.91  E-value=36  Score=35.01  Aligned_cols=68  Identities=22%  Similarity=0.309  Sum_probs=31.9

Q ss_pred             HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          193 KLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLK  260 (748)
Q Consensus       193 ~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~~l~~~~  260 (748)
                      ...+.-++..++..++.+...+..+++++......+..+...+..+..++..++..+......|..+|
T Consensus       107 k~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khG  174 (302)
T PF09738_consen  107 KSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHG  174 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            33333444444444444444444444444444444444555555555555555544444444444433

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=80.37  E-value=1e+02  Score=34.21  Aligned_cols=7  Identities=29%  Similarity=0.292  Sum_probs=2.5

Q ss_pred             HHhhHHH
Q 047747          448 QVTGLEL  454 (748)
Q Consensus       448 el~~l~~  454 (748)
                      .+..+..
T Consensus       105 ~~~~~~~  111 (457)
T TIGR01000       105 QLDNLKD  111 (457)
T ss_pred             HHHHHHH
Confidence            3333333

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	748
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-20
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-14
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	8e-06
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-05

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 97.2 bits (242), Expect = 8e-21
 Identities = 66/341 (19%), Positives = 143/341 (41%), Gaps = 13/341 (3%)

Query: 220  EVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAE 279
            +V+  + ++ A+ EE +      Q A ++++E E+    L  E   L   +     + AE
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 280  LKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEE 339
             ++        + EL   L ++      +  E+E   +   E +K+ + + +  +QL EE
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEAR---IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967

Query: 340  KLVLGK---ELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEF 396
            +    K   E  T  GKI  ME  +   + + + L++     EE    LT  ++E   + 
Sbjct: 968  EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027

Query: 397  QQAQNLIQDLMAESSQLKEKMVEKER---EVSSLVEMHEVRGNETLAQIKELQAQVTGLE 453
            +    L     +  S+L+ ++ ++E+   E+  +    E   ++   QI ELQAQ+  L+
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

Query: 454  LELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLE 513
             +L   +   +  + +++ + +      ++  +L++ ISDL+    E  +       K E
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ----EDLESEKAARNKAE 1143

Query: 514  ANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFK 554
              + +    +E L  ++ D L    +    +    +    K
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 95.3 bits (237), Expect = 3e-20
 Identities = 63/355 (17%), Positives = 145/355 (40%), Gaps = 32/355 (9%)

Query: 164  EYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSD 223
            E Q+    +Q   E  +  + E + L  +  +L  E   L +KL A    E EL  E  +
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA----ETELYAEAEE 913

Query: 224  MKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQK 283
            M+ +L A+ +E E +  E +   ++I+E EE  + L+ E + +   ML+      E +  
Sbjct: 914  MRVRLAAKKQELEEILHEME---ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 284  LSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVL 343
                   +   + +++ +  D   +  +   + +  +  E+   DL  +  +  E+   L
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 344  GKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLI 403
             K        IS +E +L+  ++   +L +     E E+  L  +I+E+  +  + +  +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090

Query: 404  QDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHN 463
                 E      ++ ++  + ++ ++           +I+EL++ ++ L+ +LES +   
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALK-----------KIRELESHISDLQEDLESEK--- 1136

Query: 464  RDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESE 518
                       AA  + E++   L   +  L+   ++  D   T      ++  +
Sbjct: 1137 -----------AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 92.2 bits (229), Expect = 3e-19
 Identities = 63/369 (17%), Positives = 140/369 (37%), Gaps = 46/369 (12%)

Query: 125  EYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKL 184
               +     K+    A  E+ EL+++ T   EEK  L  + Q+      EA E       
Sbjct: 861  AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE------- 913

Query: 185  EAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQT 244
                L  +K +L     E+  +++   +   +L  E   M++Q+    E+ E      Q 
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 245  ALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRD 304
               +   A+  I+ ++ +   + +   +       L++++S      AE   + +++++ 
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033

Query: 305  KDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESS 364
            K+        +  R+++ EK  ++L     +L  E   L +++  L+ +I+ ++ QL   
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093

Query: 365  KQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREV 424
                          EEE ++   ++ + +++   A   I++L +  S L+E + E E+  
Sbjct: 1094 --------------EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL-ESEK-- 1136

Query: 425  SSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEEN 484
                           A   + + Q   L  ELE+L+        +++         +E  
Sbjct: 1137 ---------------AARNKAEKQKRDLSEELEALKT-------ELEDTLDTTATQQELR 1174

Query: 485  LQLQARISD 493
                    D
Sbjct: 1175 GSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 91.1 bits (226), Expect = 7e-19
 Identities = 66/325 (20%), Positives = 132/325 (40%), Gaps = 16/325 (4%)

Query: 311  EKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSD 370
            E +    R ++ E   ++L     QL EEK +L ++L+      +  E+       +  +
Sbjct: 865  ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQE 924

Query: 371  LSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEM 430
            L       EE    +  +I E     QQ Q   + +  +   L+E++ E+E     L   
Sbjct: 925  L-------EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 431  ---HEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQL 487
                + +  +    I  ++ Q   L  E + L+    D+   +  +   AK L +   + 
Sbjct: 978  KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037

Query: 488  QARISDLEML---TKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEK 544
            ++ IS+LE+     ++   EL     KLE   S+   +I  L AQI +L A L     E 
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097

Query: 545  SKLE---EHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYI 601
                   E    + + A  +++ L + +  LQ++LES +  +   E Q  + + E+    
Sbjct: 1098 QAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157

Query: 602  IEVQILKEEIVNKTEVQQKILEEIE 626
             E++   +    + E++    ++ +
Sbjct: 1158 TELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 89.5 bits (222), Expect = 2e-18
 Identities = 62/344 (18%), Positives = 138/344 (40%), Gaps = 12/344 (3%)

Query: 316  LRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNL 375
            L +V   E+  +       +  E +     EL+ L  K + + ++    ++++   ++  
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908

Query: 376  TATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRG 435
               EE    L  K  E+     + +  I++    S QL+ +  + ++++  L E  E   
Sbjct: 909  AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE--- 965

Query: 436  NETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLE 495
             E  A  ++LQ +    + +++ ++     M  Q +      K LEE    L   +++ E
Sbjct: 966  -EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 496  MLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD 555
                E+   LT    K E+  SE   R++       +L      L  E S L E +    
Sbjct: 1025 ----EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI---- 1076

Query: 556  DEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKT 615
             E   Q+  L  Q+   ++EL++   +      Q     ++I E    +  L+E++ ++ 
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136

Query: 616  EVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEE 659
              + K  ++   L+  +++L+ E+    +  +  +E      ++
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 86.4 bits (214), Expect = 2e-17
 Identities = 66/356 (18%), Positives = 140/356 (39%), Gaps = 33/356 (9%)

Query: 351  RGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAES 410
              K++  E+++++  +E+    +     E E K L  K +++  E    Q  +Q   AE+
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ---AET 905

Query: 411  SQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQI 470
                E    + R  +   E+ E+  +E  A+I+E + +   L+ E + +Q    D+  Q+
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEIL-HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964

Query: 471  DSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQI 530
            + + AA ++L+ E +    +I  +E    +    +     KL         R+ +LT  +
Sbjct: 965  EEEEAARQKLQLEKVTADGKIKKME----DDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020

Query: 531  NDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQL 590
             +      +L   K+K E                    +  L+  L+     +  LE   
Sbjct: 1021 AEEEEKAKNLTKLKNKHES------------------MISELEVRLKKEEKSRQELEKIK 1062

Query: 591  EEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLE 650
             +   E S+   ++  L+ +I        K  EE+++  AR++    +  +   +  +LE
Sbjct: 1063 RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE 1122

Query: 651  EQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQI 706
              +    E+   L  EK        + EK   +   EL +L+ +  +  +  + Q 
Sbjct: 1123 SHISDLQED---LESEKAARN----KAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.1 bits (182), Expect = 9e-14
 Identities = 52/323 (16%), Positives = 128/323 (39%), Gaps = 14/323 (4%)

Query: 61   ELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYSSSSSDSDSDSDHSSKNKSNKNG 120
            +  E    + +  + Q    +  L++K+  + E    +       +      +   ++  
Sbjct: 874  QKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME 933

Query: 121  ELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIR 180
                E ++ +  ++ E      ++ +L+ ++      ++ L LE  +A  +I       +
Sbjct: 934  ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI-------K 986

Query: 181  NLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNL 240
             ++ +   +  +  KLT E   L +++       AE   +  ++ +           L +
Sbjct: 987  KMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046

Query: 241  EYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLED 300
              +      QE E+I R L+ E+  L+  + E  A  AELK +L+   E       RLED
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 301  ISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQ 360
             +  K+N + +   +   + + ++  E  + + ++  ++K  L +ELE L+        +
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK-------TE 1159

Query: 361  LESSKQEVSDLSQNLTATEEENK 383
            LE +    +   +   +  +++ 
Sbjct: 1160 LEDTLDTTATQQELRGSDYKDDD 1182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 95.7 bits (237), Expect = 2e-20
 Identities = 95/608 (15%), Positives = 197/608 (32%), Gaps = 147/608 (24%)

Query: 219 REVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEG-LAVN 277
           ++V DM + + ++ E    +  +       +     +   L  + E +    +E  L +N
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 278 AE-LKQKLSIAGELEAELNHRLEDISRDK---DNLIMEKETVLRRVEEGEKIAEDLRNSA 333
            + L   +    + +  +  R+    RD+   DN +  K  V R     +   + LR + 
Sbjct: 91  YKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL----QPYLK-LRQAL 144

Query: 334 DQLNEEKLVL-------GKE---LETLRGK--ISNMEQQL-------ESSKQEVSDLSQN 374
            +L   K VL       GK    L+          M+ ++        +S + V ++ Q 
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 375 LTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVR 434
           L    + N          ++    + N+   + +  ++L+  +  K  E   LV +  V+
Sbjct: 205 LLYQIDPN---------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQ 254

Query: 435 GNETLA----QIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQAR 490
             +         K L   +T             R   V     AA    +  ++      
Sbjct: 255 NAKAWNAFNLSCKIL---LT------------TRFKQVTDFLSAATTTHISLDHHS---- 295

Query: 491 ISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADL--DSLHNEKSKLE 548
                 LT +    L    +       + L R        N     +  +S+ +  +  +
Sbjct: 296 ----MTLTPDEVKSLLLKYLDCRP---QDLPR---EVLTTNPRRLSIIAESIRDGLATWD 345

Query: 549 EHMVFKDDEASTQVKGLMNQVDT--LQQELESLRGQKAVLE--VQLEEKTREI--SEYII 602
                  D+ +T ++  +N ++    ++  + L    +V      +      +   + I 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL----SVFPPSAHIPTILLSLIWFDVIK 401

Query: 603 EVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQM--RLKIEE- 659
                   +VNK      + ++ +  T  I S+ LE+      +  L   +     I + 
Sbjct: 402 SDV---MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 660 -------------------GFHLTE----EKLGLLDGIFE----LEKTL-------TERG 685
                              G HL      E++ L   +F     LE+ +          G
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 686 SELSSLQ-----EKHINVENKASAQITAMAAQASLPQISRNGAGAGSCLVLHSPYSKII- 739
           S L++LQ     + +I  +N    +    A    LP+I  N        ++ S Y+ ++ 
Sbjct: 519 SILNTLQQLKFYKPYI-CDNDPKYERLVNAILDFLPKIEEN--------LICSKYTDLLR 569

Query: 740 --LMDEKS 745
             LM E  
Sbjct: 570 IALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.4 bits (200), Expect = 6e-16
 Identities = 89/603 (14%), Positives = 178/603 (29%), Gaps = 151/603 (25%)

Query: 17  YIDPEKDEQLKGNK--IEI-EDKFKKIL--KLVQD------KDLQEKDGIKEPLVE---- 61
           ++D E  E     K  + + ED F      K VQD         +    I          
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 62  -LIEGFHSQYQSLYAQY--DNLRGE---LKKKIHGK-----KENETYSSSSSDSDSDSDH 110
            L     S+ + +  ++  + LR     L   I  +          Y        +D+  
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 111 SSKNKSN--------KNG--ELESEYQKTTDGM----KQELDAATLEVSELKRRM----- 151
            +K   +        +    EL        DG+    K  +        +++ +M     
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 152 --TATSEEKEALNLEYQSALSRI-----QEAGELIRNLKLEAESLNTEKLKLT------- 197
                +       LE    L            +   N+KL   S+  E  +L        
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 198 -------VENAELNQKLDAAGKIEAEL----NREVSDMKRQLTARSEEKEALNLEYQTAL 246
                  V+NA+     + + KI   L     ++V+D    L+A +    +L+  +   L
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKI---LLTTRFKQVTD---FLSAATTTHISLD-HHSMTL 298

Query: 247 SKIQEAEEIIRN-LKLEAESLNNDMLEG--LAVN---AELKQ------------------ 282
           +   E + ++   L    + L  ++L      ++     ++                   
Sbjct: 299 TP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 283 --KLSIAGELEAELNHRLEDISR-DKDNLIMEKETVLRRV------EEGEKIAEDLRNS- 332
             + S+     AE     + +S       I     +L  +       +   +   L    
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 333 --ADQLNEEKLVL-GKELETLRGKISN---MEQQL-ESSKQEVSDLSQNLTATEEENKSL 385
               Q  E  + +    LE L+ K+ N   + + + +      +  S +L     +    
Sbjct: 416 LVEKQPKESTISIPSIYLE-LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 386 T-----LKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLA 440
           +     LK  E        + +  D       L++K+    R  S+         N TL 
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDF----RFLEQKI----RHDSTAWNASGSILN-TLQ 525

Query: 441 QIKELQAQVTGLELELES--------LQAHNRDMV-------VQIDSKAAAAKQLEEENL 485
           Q+K  +  +   + + E         L     +++       ++I   A      EE + 
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

Query: 486 QLQ 488
           Q+Q
Sbjct: 586 QVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 2e-14
 Identities = 94/652 (14%), Positives = 193/652 (29%), Gaps = 175/652 (26%)

Query: 110 HSSKNKSNKNGELESEYQKTT----DGMKQELDAATLEVSELKRRMTATSEEKEALNLEY 165
           H   +   + GE + +Y+       D      D    +V ++ + + +  E    +  + 
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSK- 58

Query: 166 QSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENA--------------ELNQKLDAAG 211
                 +     L   L  + E +    ++  VE                E  Q      
Sbjct: 59  ----DAVSGTLRLFWTLLSKQEEM----VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 212 KIEAELNREVSD----MKRQLTARSEEKEALNLEYQTALSKIQEAEEII----------- 256
               + +R  +D     K  ++ R +    L    + AL +++ A+ ++           
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVS-RLQPYLKL----RQALLELRPAKNVLIDGVLGSGKTW 165

Query: 257 ------RNLKLEAE--------SLNN--------DMLEGLAVNAELKQKLSIAGELEAEL 294
                  + K++ +        +L N        +ML+ L     +    +   +  + +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ--IDPNWTSRSDHSSNI 223

Query: 295 NHRLEDISRDKDNLIMEKET-----VLRRVEEGEKI-AEDLRNSADQLNEEKLVLGKELE 348
             R+  I  +   L+  K       VL  V+  +   A +L               K L 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-------------CKILL 270

Query: 349 TLRGK-ISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLM 407
           T R K +++      ++   +   S  LT   +E KSL LK  +            QDL 
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLT--PDEVKSLLLKYLDCR---------PQDLP 319

Query: 408 AESSQ---LKEKMV-EKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLE-LELESLQAH 462
            E       +  ++ E  R+  +  +  +    + L  I E       L  LE    +  
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-----SLNVLEPAEYRKM 374

Query: 463 NRDMVVQIDSKAAAAKQLEEENLQLQARISD--LEMLTKERGDELTTTIMKLEANESESL 520
              + V                    A I    L ++  +        ++      S   
Sbjct: 375 FDRLSV-----------FPPS-----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 521 SRIENLTAQINDLLADL-------DSLH---------------NEKSKLEE--------- 549
            + +  T  I  +  +L        +LH               ++               
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 550 -HMVFKD-DEASTQVKGLMNQVDTLQQELE----SLRGQKAVLEVQLEEKTREISEYIIE 603
            H+   +  E  T  + +      L+Q++     +     ++L    + K  +   YI +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK--PYICD 536

Query: 604 VQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDL-EEQMR 654
                E +VN        L +IE      K  +L   +L  +   + EE  +
Sbjct: 537 NDPKYERLVNAIL---DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 1e-08
 Identities = 59/376 (15%), Positives = 123/376 (32%), Gaps = 85/376 (22%)

Query: 335 QLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSN 394
            + E+  V     +     + +M + +  SK+E+  +   + + +  + +L L  + +S 
Sbjct: 23  SVFEDAFV--DNFDC--KDVQDMPKSI-LSKEEIDHI---IMSKDAVSGTLRLFWTLLSK 74

Query: 395 EFQQAQNLIQDLMAES-----SQLKEKMVEKEREVSSLVEMHEV--RGNETLAQ--IKEL 445
           + +  Q  +++++  +     S +K +  +        +E  +     N+  A+  +  L
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 446 QAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDEL 505
           Q     L   L  L+       V ID    + K      + L       ++  K    + 
Sbjct: 135 Q-PYLKLRQALLELRPAKN---VLIDGVLGSGKTW----VALDV-CLSYKVQCK-MDFK- 183

Query: 506 TTTI--MKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVK 563
              I  + L  N +   + +E L      LL  +D          +H             
Sbjct: 184 ---IFWLNL-KNCNSPETVLEML----QKLLYQIDPNWTS---RSDHS------------ 220

Query: 564 GLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYII--EVQILKEEIVNKTEVQQKI 621
                   ++  + S++ +   L   L+ K  E    ++   VQ    +  N   +  KI
Sbjct: 221 ------SNIKLRIHSIQAELRRL---LKSKPYENC-LLVLLNVQ--NAKAWNAFNLSCKI 268

Query: 622 LEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTL 681
           L     LT R K +   +++       L+              +E   L      L K L
Sbjct: 269 L-----LTTRFKQVTDFLSAATTTHISLDH-----HSMTLT-PDEVKSL------LLKYL 311

Query: 682 TERGSELSSLQEKHIN 697
             R  +L   +    N
Sbjct: 312 DCRPQDLPR-EVLTTN 326

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 75.5 bits (186), Expect = 3e-14
 Identities = 48/295 (16%), Positives = 99/295 (33%), Gaps = 21/295 (7%)

Query: 196  LTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALN--LEYQTALSKIQEAE 253
                 A   ++  AA  I+          +R    R   +   +  +  Q  L       
Sbjct: 805  QARCYATFLRRTRAAIIIQK--------FQRMYVVRKRYQCMRDATIALQALLRGYLVRN 856

Query: 254  EIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKE 313
            +    L+     +    + G        + L     L+      +    R+   L +E  
Sbjct: 857  KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK--RELKKLKIEA- 913

Query: 314  TVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLSQ 373
               R VE  +K+   L N   QL  +     KE ++L  K++N+E    +  +++    +
Sbjct: 914  ---RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 374  NLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEV 433
             L  +EEE K+ T ++  +  E  + +  +     E   ++E   + + E   LV   + 
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030

Query: 434  RGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQ 488
            +      + +EL  ++     E+              +        L +E L+ Q
Sbjct: 1031 QNTLLKTEKEELNRRIHDQAKEITETMEKKLV-----EETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 72.1 bits (177), Expect = 5e-13
 Identities = 42/238 (17%), Positives = 89/238 (37%), Gaps = 11/238 (4%)

Query: 121  ELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALN--LEYQSALSRIQEAGEL 178
             L   Y           +  ++ + +  R   A       L   +  Q    R+    EL
Sbjct: 847  ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906

Query: 179  IRNLKLEAESLNTE---KLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEK 235
             + LK+EA S+       + L  +  +L +K+D   K    L  ++++++   +  +E+ 
Sbjct: 907  -KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965

Query: 236  EALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAELKQKLSIAGELEAELN 295
             +     + +  + + A   + +L+ E   L  ++ +      E K     A + + E  
Sbjct: 966  RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ---TQTEKKTIEEWADKYKHETE 1022

Query: 296  HRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGK 353
              + ++      L  EKE + RR+ +  K   +      +L EE   L  +L   R +
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK--KLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.8 bits (153), Expect = 3e-10
 Identities = 42/266 (15%), Positives = 88/266 (33%), Gaps = 35/266 (13%)

Query: 436  NETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLE 495
                     LQA + G  +  +          + I             +  L+A +  L+
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIV-YLQ 894

Query: 496  MLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD 555
               +    +     +K+EA   E   ++                       LE       
Sbjct: 895  CCYRRMMAKRELKKLKIEARSVERYKKL--------------------HIGLEN------ 928

Query: 556  DEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKT 615
                 ++  L  ++D   +E +SL  +   LE+    +T ++   +  +++ +EE  N T
Sbjct: 929  -----KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983

Query: 616  EVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIF 675
                 + EEI  L   +   + E  ++       + +    + E   L E+   L     
Sbjct: 984  NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLKTEKE 1040

Query: 676  ELEKTLTERGSELSSLQEKHINVENK 701
            EL + + ++  E++   EK +  E K
Sbjct: 1041 ELNRRIHDQAKEITETMEKKLVEETK 1066

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 61.3 bits (149), Expect = 8e-10
 Identities = 40/252 (15%), Positives = 90/252 (35%), Gaps = 18/252 (7%)

Query: 412  QLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQID 471
             +++  +  +  +   +  ++ +      +   +Q  V G    +   +     + +Q  
Sbjct: 837  CMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896

Query: 472  SKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQIN 531
             +   A + E + L+++AR  +                  LE    +   +I+    +  
Sbjct: 897  YRRMMA-KRELKKLKIEARSVERYKKLHI----------GLENKIMQLQRKIDEQNKEYK 945

Query: 532  DLLADLDSLHNEKSKLEEHMVFKDDEAST---QVKGLMNQVDTLQQELESLRGQKAVLEV 588
             LL  +++L    S   E +    +       + K   N+V +LQ+E+  LR +    + 
Sbjct: 946  SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

Query: 589  QLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSD 648
            + +       +Y  E + L  E+    E    +  E E L  RI     E+     +K  
Sbjct: 1006 EKKTIEEWADKYKHETEQLVSEL---KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

Query: 649  LEE-QMRLKIEE 659
             E  Q+ L + +
Sbjct: 1063 EETKQLELDLND 1074

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 34/243 (13%), Positives = 80/243 (32%), Gaps = 7/243 (2%)

Query: 309  IMEKETVLRRVEEGEKIAEDLRNSADQLNEEKLVLGKELETLRGKISNMEQQLESSKQEV 368
             +  + +LR      K    LR     + ++ +            +  +       ++ +
Sbjct: 842  TIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMM 901

Query: 369  SDL-SQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSL 427
            +    + L       +        + N+  Q Q  I +   E   L EKM   E   S+ 
Sbjct: 902  AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 428  VEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQL 487
             E         + +++  + +       + SLQ     +  ++       K +EE   + 
Sbjct: 962  TEKLR----SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017

Query: 488  QARISDLEMLTKERGDELTTTIMKLEAN-ESESLSRIENLTAQINDLLADLDS-LHNEKS 545
            +     L    KE+   L T   +L      ++    E +  ++ +    L+  L++E+ 
Sbjct: 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077

Query: 546  KLE 548
            + +
Sbjct: 1078 RYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 21/271 (7%)

Query: 316  LRRVEEGEKIAEDLRNSADQL---NEEKLVLGKELETLRGKISNMEQQLESSKQEVSDLS 372
             +R+    K  + +R++   L       LV  K    LR   S + Q+            
Sbjct: 825  FQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYH 884

Query: 373  QNLTATEEENKSLTLKISE-MSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMH 431
            + L A           +++    + +     ++        L+ K+++ +R++    + +
Sbjct: 885  RTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY 944

Query: 432  EVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARI 491
            +      L ++  L+   +    +L S     R    +  +       L+EE  +L+  +
Sbjct: 945  K----SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKEL 1000

Query: 492  SDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHM 551
               +   K   +       + E   SE   +   L  +  +L   +     E ++  E  
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETME-- 1058

Query: 552  VFKDDEASTQVKGLMNQVDTLQQELESLRGQ 582
                       K L+ +   L+ +L   R +
Sbjct: 1059 -----------KKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 26/142 (18%), Positives = 57/142 (40%)

Query: 573  QQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARI 632
             + +E  +     LE ++ +  R+I E   E + L E++ N         E++ S   R+
Sbjct: 913  ARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972

Query: 633  KSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQ 692
            +  E E  +  N+   L+E++    +E      EK  + +   + +    +  SEL    
Sbjct: 973  RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032

Query: 693  EKHINVENKASAQITAMAAQAS 714
                  + + + +I   A + +
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEIT 1054

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 36/279 (12%), Positives = 95/279 (34%), Gaps = 26/279 (9%)

Query: 1    MTKRRFRESIKSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDLQEKDGIKE--- 57
            + + R    I+ F   Y+  ++ + ++   I ++   +  L   + + +  +        
Sbjct: 813  LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQK 872

Query: 58   --PLVELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYSSSSSDSDSDSDHSSKNK 115
                      +H   +++       R  + K+   K + E             +   K  
Sbjct: 873  HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE---------ARSVERYKKLH 923

Query: 116  S---NKNGELE---SEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSAL 169
                NK  +L+    E  K    + ++++   +  S    ++ +  E       E ++A 
Sbjct: 924  IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983

Query: 170  SRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDA----AGKIEAELNREVSDMK 225
            +R+    E I  L+ E     TEK  +     +   + +       +    L  E  ++ 
Sbjct: 984  NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043

Query: 226  RQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAE 264
            R++    + KE      +  + + ++ E  + + +L  +
Sbjct: 1044 RRI--HDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 48.4 bits (114), Expect = 8e-06
 Identities = 58/515 (11%), Positives = 161/515 (31%), Gaps = 14/515 (2%)

Query: 37  FKKILKLVQDKDLQEKDGIKEPLVELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENET 96
              +          +K       +  +   + + + L   Y+ L  +L + I        
Sbjct: 215 MTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLE 274

Query: 97  YSSSSSDSDSDSDHSSKNKSNKNGELESEYQKTTDGMKQELDAAT-LEVSELKRRMTATS 155
             +  +   +        +  +      + Q+            T L +S     M +  
Sbjct: 275 NRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEG 334

Query: 156 EEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEA 215
           +    +N  +       +   E + N     E L+    K   + +      D    +  
Sbjct: 335 KMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQ 394

Query: 216 ELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLA 275
           + + E + +  ++ A  ++ EA   +      ++++   I + L       +  +     
Sbjct: 395 QKDYETATL-SEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQ 453

Query: 276 VNAELKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVE----EGEKIAEDLRN 331
              ++  +    G L  +    LE   +  + +        +R        E   EDL++
Sbjct: 454 ---KICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQD 510

Query: 332 SADQLNEEKLV-LGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKIS 390
           +      E++  L    E  +  + + +++ ++     +++S+ +              +
Sbjct: 511 TFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTT 570

Query: 391 EMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVT 450
               E       ++ L+    Q   +   ++++   L +    + N     I+    ++ 
Sbjct: 571 ITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIG 630

Query: 451 GLELE----LESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELT 506
            + +E    LE    H R     I +      QLE ++ Q+Q  +      T    + + 
Sbjct: 631 RISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIR 690

Query: 507 TTIMKLEANESESLSRIENLTAQINDLLADLDSLH 541
               +L    + +++ +EN     +      + ++
Sbjct: 691 VGWEQLLTTIARTINEVENQILTRDAKGISQEQMN 725

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 30/235 (12%), Positives = 86/235 (36%), Gaps = 26/235 (11%)

Query: 220  EVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVNAE 279
             ++ +   +  + ++ E   L     L K+++ E  +++L++                A+
Sbjct: 1900 FINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSL--------------AQ 1945

Query: 280  LKQKLSIAGELEAELNHRLEDISRDKDNLIMEKETVLRRVEEGEKIAEDLRNSADQLNEE 339
              ++L +  E   + N +L+ + +D+    ++++          ++   L     ++  +
Sbjct: 1946 KNRELDVKNE---QANQKLKQMVQDQQAAEIKQKDA-------RELQVQLDVRNKEIAVQ 1995

Query: 340  KLVLGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQA 399
            K+    +LE        + +++E  +   ++L            +L   I+    E+   
Sbjct: 1996 KVKAYADLEKAE-PTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL 2054

Query: 400  QNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLEL 454
                + +  ESS++K K+      + +L      R  +         + V G  +
Sbjct: 2055 IRETEQIKTESSKVKNKVDRSIALLDNLNSERG-RWEQQSENFNTQMSTVVGDVV 2108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	748
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.31
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.03
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.97
3l51_B	166	Structural maintenance of chromosomes protein 4; s	97.97
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.96
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.71
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.67
3nwc_A	189	SMC protein; structural maintenance of chromosomes	97.54
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.21
2wd5_A	233	Structural maintenance of chromosomes protein 1A;	97.06
3l51_A	161	Structural maintenance of chromosomes protein 2; s	96.88
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.77
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.62
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.62
2wd5_B	213	Structural maintenance of chromosomes protein 3; D	96.53
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.46
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.21
1gxj_A	186	SMC, chromosome segregation SMC protein; SMC dimer	96.05
1gxl_A	213	SMC, chromosome segregation SMC protein; SMC dimer	95.99
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.63
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.44
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.28
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.95
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.35
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.28
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	93.61
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.53
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	92.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.72
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	91.69
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	91.64
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	90.06
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	89.9
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	89.45
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	88.49
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	88.19
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	87.25
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	86.27
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	85.68
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	85.17
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	85.12
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	84.59
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	84.38
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.49
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	83.1
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	80.88
3bas_A	89	Myosin heavy chain, striated muscle/general contro	80.71
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	80.71
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	80.45

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.31  E-value=7.9e-08  Score=97.76  Aligned_cols=73  Identities=14%  Similarity=0.152  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 047747          623 EEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKH  695 (748)
Q Consensus       623 ~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l  695 (748)
                      ..+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...++.+...+
T Consensus       209 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  281 (284)
T 1c1g_A          209 AQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM  281 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444445555555555555555555555555555555555555555666655665555555555544

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.03  E-value=4.6e-10  Score=136.19  Aligned_cols=11  Identities=0%  Similarity=0.259  Sum_probs=4.0

Q ss_pred             HHhHHHHHHHH
Q 047747          353 KISNMEQQLES  363 (748)
Q Consensus       353 ~l~~le~~l~~  363 (748)
                      ++..++..+..
T Consensus       865 eL~el~~~L~~  875 (1184)
T 1i84_S          865 ELQRTKERQQK  875 (1184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.97  E-value=1e-09  Score=133.10  Aligned_cols=100  Identities=20%  Similarity=0.105  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhh---hhhhHHH
Q 047747          630 ARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVE---NKASAQI  706 (748)
Q Consensus       630 ~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~---~~a~~~~  706 (748)
                      ..+..++..+..+..++..+...+..++.++..+...+..+...+..++..+.++...+..+.+.+....   .......
T Consensus      1067 ~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~ 1146 (1184)
T 1i84_S         1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146 (1184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444444444444444444444444444444445444444444443331   1223456


Q ss_pred             HHHHHhhcchHhhhccCCCCcee
Q 047747          707 TAMAAQASLPQISRNGAGAGSCL  729 (748)
Q Consensus       707 ~~l~~~i~~Lk~~l~~lG~~~~~  729 (748)
                      ..+...+..|+..|..+|+.+..
T Consensus      1147 ~~L~~ele~L~~~Ieel~~vn~a 1169 (1184)
T 1i84_S         1147 RDLSEELEALKTELEDTLDTTAT 1169 (1184)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHH
Confidence            67889999999999999988643

>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0

Probab=97.97  E-value=2e-08  Score=92.67  Aligned_cols=75  Identities=13%  Similarity=0.119  Sum_probs=64.5

Q ss_pred             HHHHhHHHHHhhhhhH-------------------HHHHHhhhHhhhHHHHHHHHHHHhHh-------------------
Q 047747          262 EAESLNNDMLEGLAVN-------------------AELKQKLSIAGELEAELNHRLEDISR-------------------  303 (748)
Q Consensus       262 el~~~~~~~~~ai~~~-------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~-------------------  303 (748)
                      +|+.++++|..||+++                   +|||+++  .||+|   |+||+.|++                   
T Consensus        25 dLi~v~~~y~~Aie~alg~l~~iVVd~~~~A~~~i~~Lk~~~--~GRat---flpL~~i~~~~~~~~~~~~~~~~~~a~d   99 (166)
T 3l51_B           25 DLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHN--IGIAT---FIGLDKMTVWAKKMSKIQTPENTPRLFD   99 (166)
T ss_dssp             GSCBCCGGGHHHHHHHCGGGGSEEESCHHHHHHHHHHHHHTT--CCCCC---EEEGGGTGGGTTSCCCCCCGGGCCBHHH
T ss_pred             HheeeCHHHHHHHHHHHhhCceEEECCHHHHHHHHHHHHHcC--CCeEE---EEECcccccccccccccccccchhhHhh
Confidence            8888999999999884                   8999999  99999   999987641                   


Q ss_pred             ----------------hhhhhhHH-HHHHHHHhH---hhHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747          304 ----------------DKDNLIME-KETVLRRVE---EGEKIAEDLRNSADQLNEEKLV-LGK  345 (748)
Q Consensus       304 ----------------l~~~lv~e-l~~a~~~~~---~~~~~Vt~L~~l~g~l~~~~g~-~~~  345 (748)
                                      ||+|+||+ ++.|.+...   .++++||    ++|++++++|+ ||+
T Consensus       100 lv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~r~VT----ldGdli~~~G~~tGG  158 (166)
T 3l51_B          100 LVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVT----LQGQIIEQSGTMSGG  158 (166)
T ss_dssp             HCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBCCEEE----TTSCEECTTCCEEEC
T ss_pred             eeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCcEEEE----CCCEEEeCCEEEECC
Confidence                            99999999 999966552   4788999    99999999998 764

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.96  E-value=0.00036  Score=69.08  Aligned_cols=42  Identities=17%  Similarity=0.170  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHH
Q 047747          626 ESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEK  667 (748)
Q Consensus       626 ~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~  667 (748)
                      ..+..++..+...+..+..++.++.+++..+...+..+...+
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l  134 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM  134 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444444434444444433333333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.71  E-value=0.012  Score=53.59  Aligned_cols=7  Identities=14%  Similarity=-0.130  Sum_probs=0.0

Q ss_pred             hhcchHh
Q 047747          712 QASLPQI  718 (748)
Q Consensus       712 ~i~~Lk~  718 (748)
                      .+..|+.
T Consensus       169 E~rDLk~  175 (189)
T 2v71_A          169 EARDLRQ  175 (189)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            3333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.67  E-value=0.0064  Score=60.00  Aligned_cols=25  Identities=8%  Similarity=-0.035  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          395 EFQQAQNLIQDLMAESSQLKEKMVE  419 (748)
Q Consensus       395 ~i~~l~~~i~~l~~~~~~l~~~l~~  419 (748)
                      .+..+...+..+...+.....++..
T Consensus        54 ~l~d~~~~~~~~e~~i~~~~~ri~~   78 (256)
T 3na7_A           54 EKLALKLQVSKNEQTLQDTNAKIAS   78 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}

Probab=97.54  E-value=8e-08  Score=90.15  Aligned_cols=87  Identities=18%  Similarity=0.155  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHH--------HHHHHHhHHH-HHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHH
Q 047747          249 IQEAEEIIRNL--------KLEAESLNND-MLEGLAVN--------------------AELKQKLSIAGELEAELNHRLE  299 (748)
Q Consensus       249 ~~~~~~~l~~~--------~~el~~~~~~-~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~  299 (748)
                      +..+++.++..        -.+++.++++ |..||+++                    .|||..+  .||+|   |+||+
T Consensus        21 ~~~~v~~l~~~~~~gv~G~l~dLi~V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~--~GRat---flpl~   95 (189)
T 3nwc_A           21 GNRAAEELKRSGIGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHK--LGRLT---FLPLN   95 (189)
T ss_dssp             SCTHHHHHTTSCCCSEEEEHHHHCEESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTT--CCCCC---EEETT
T ss_pred             HHHHHHHHHhcCCCCceEEHHHheeeChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcC--CCceE---EEECC
Confidence            45566666532        2399999888 99999884                    7999988  99999   99997


Q ss_pred             HhHh----------------------------hhhhhhHH-HHHHHHHhHhhHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747          300 DISR----------------------------DKDNLIME-KETVLRRVEEGEKIAEDLRNSADQLNEEKLV-LGK  345 (748)
Q Consensus       300 ~i~~----------------------------l~~~lv~e-l~~a~~~~~~~~~~Vt~L~~l~g~l~~~~g~-~~~  345 (748)
                      .+++                            ||+|+||+ ++.|.+. .+++++||    ++|+++.++|+ +|+
T Consensus        96 ~i~~~~~~~~~g~~a~dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l-~~~~r~VT----ldGd~i~~~G~~tGG  166 (189)
T 3nwc_A           96 KIKPKHVDSSVGLPAVDVIEYDQKIENAVKFALGDTVIVNSMEEARPH-IGKVRMVT----IEGELYERSGAITGG  166 (189)
T ss_dssp             TCCCCCCCSCSSEEGGGGEECCGGGHHHHHHHHTTEEEESCSGGGGGG-TTTSEEEE----TTSCEECTTSCEECS
T ss_pred             ccccccCCCCCCcEEeeeeccCHHHHHHHHHHhCCEEEECCHHHHHHH-hCCCeEEe----CCCcEEECCEEEEeC
Confidence            5421                            99999999 9999544 44788999    99999999887 753

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.21  E-value=0.098  Score=46.38  Aligned_cols=44  Identities=16%  Similarity=0.134  Sum_probs=19.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047747          459 LQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERG  502 (748)
Q Consensus       459 l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~  502 (748)
                      ++..+..+..++.........+......+...+..++.....+.
T Consensus        95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33344444444444444444444444444445555544444433

>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}

Probab=97.06  E-value=9.8e-07  Score=86.64  Aligned_cols=75  Identities=12%  Similarity=0.029  Sum_probs=59.6

Q ss_pred             HHHHh-HHHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhH------------------
Q 047747          262 EAESL-NNDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDIS------------------  302 (748)
Q Consensus       262 el~~~-~~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~------------------  302 (748)
                      +++.+ +++|..||+++                    .||+...  .||+|   |+|++.+.                  
T Consensus        61 dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~--~Gr~t---flpl~~i~~~~~~~~~~~~~g~~~l~  135 (233)
T 2wd5_A           61 DLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQR--GEPET---FLPLDYLEVKPTDEKLRELKGAKLVI  135 (233)
T ss_dssp             HHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTT--CCCEE---EEETTTCCCCCCCGGGGGCSSCEESG
T ss_pred             HhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcC--CCCeE---EEECcccccCCcchhccCCCCchHHH
Confidence            88887 58999998774                    6888877  89999   99877641                  


Q ss_pred             -------h---------hhhhhhHH-HHHHHHHhH---hhHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747          303 -------R---------DKDNLIME-KETVLRRVE---EGEKIAEDLRNSADQLNEEKLV-LGK  345 (748)
Q Consensus       303 -------~---------l~~~lv~e-l~~a~~~~~---~~~~~Vt~L~~l~g~l~~~~g~-~~~  345 (748)
                             +         ||++++|+ ++.|.....   .++++||    ++|+++.++|. +|+
T Consensus       136 dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VT----ldG~~~~~~G~~tGG  195 (233)
T 2wd5_A          136 DVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVA----LDGTLFQKSGVISGG  195 (233)
T ss_dssp             GGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSCCCEEE----TTCCEECTTSCEEEC
T ss_pred             HhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEe----cCCEEEeCCeeEeCC
Confidence                   0         78888998 999965553   2578999    99999999887 765

>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}

Probab=96.88  E-value=1.9e-06  Score=79.03  Aligned_cols=75  Identities=11%  Similarity=0.073  Sum_probs=53.1

Q ss_pred             HHHHhH-HHHHhhhhhH-----------------HHHHHhhhHhhhHHHHHHHHHHHhH-----------------h---
Q 047747          262 EAESLN-NDMLEGLAVN-----------------AELKQKLSIAGELEAELNHRLEDIS-----------------R---  303 (748)
Q Consensus       262 el~~~~-~~~~~ai~~~-----------------~~Lk~~~~~~gr~t~~~~l~L~~i~-----------------~---  303 (748)
                      +|+.++ ++|..||+++                 ..++.. ...||+|   |+||+.|+                 +   
T Consensus        23 dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~-~~~GR~t---flpL~~i~~~~~~~~~~~~~~~~~~~~~~   98 (161)
T 3l51_A           23 SLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKG-ELKRRYT---IIPLNKISARCIAPETLRVAQNLVGPDNV   98 (161)
T ss_dssp             GSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHS-CCSSCEE---EEETTTCCCCCCCHHHHHHHHHHHCTTSE
T ss_pred             HheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHH-hhCCcEE---EEECccccccCcCHHHHhhhhhcCCCcch
Confidence            677885 7899999884                 223221 1279999   99987532                 1   


Q ss_pred             --------------------hhhhhhHH-HHHHHHHhHh---hHHHHHHHHhhHHhHHHHHHH-hh
Q 047747          304 --------------------DKDNLIME-KETVLRRVEE---GEKIAEDLRNSADQLNEEKLV-LG  344 (748)
Q Consensus       304 --------------------l~~~lv~e-l~~a~~~~~~---~~~~Vt~L~~l~g~l~~~~g~-~~  344 (748)
                                          ||+|+||+ ++.|......   ++++||    ++|++++++|+ +|
T Consensus        99 ~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VT----ldGd~i~~~G~~tG  160 (161)
T 3l51_A           99 HVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVT----LGGDVFDPHGTLSG  160 (161)
T ss_dssp             EEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEE----TTSCEECCC-----
T ss_pred             hHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEe----CCCeEEcCCEEEec
Confidence                                99999999 9999655532   578999    99999998877 65

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.77  E-value=0.27  Score=43.63  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=22.3

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          451 GLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLE  495 (748)
Q Consensus       451 ~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~  495 (748)
                      .++..+..+..++..+...+.........|...+..++.....++
T Consensus        94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            333444444444444444444444555555555555555555555

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.62  E-value=0.16  Score=43.85  Aligned_cols=104  Identities=18%  Similarity=0.238  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 047747          128 KTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKL  207 (748)
Q Consensus       128 ~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l  207 (748)
                      ..+..++..+.........+......+..++..+..+++.....+.+.+.....+......+...+..+...+.+.....
T Consensus        20 eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~   99 (129)
T 2fxo_A           20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMN   99 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666677777777777777777777777777777777777777777777666666666666666666665555555


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHH
Q 047747          208 DAAGKIEAELNREVSDMKRQLTAR  231 (748)
Q Consensus       208 ~~~~~~~~~l~~~l~~l~~~l~~l  231 (748)
                      ..+......++..+..++..+..+
T Consensus       100 ~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A          100 AELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555554443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.62  E-value=0.7  Score=60.68  Aligned_cols=43  Identities=12%  Similarity=0.070  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 047747          620 KILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFH  662 (748)
Q Consensus       620 ~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~  662 (748)
                      .++.+++....++.....-+..|+.|.....+.+..+..++..
T Consensus      2060 ~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A         2060 QIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence            3333444444444444444555555555555555444444433

>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}

Probab=96.53  E-value=3.2e-05  Score=74.82  Aligned_cols=75  Identities=13%  Similarity=0.089  Sum_probs=57.4

Q ss_pred             HHHHhHHHHHhhhhhH--------------------HHHHHh-hhHhhhHHHHHHHHHHHhHh-----------------
Q 047747          262 EAESLNNDMLEGLAVN--------------------AELKQK-LSIAGELEAELNHRLEDISR-----------------  303 (748)
Q Consensus       262 el~~~~~~~~~ai~~~--------------------~~Lk~~-~~~~gr~t~~~~l~L~~i~~-----------------  303 (748)
                      +++.|+++|..||+++                    .||+.. .  .||+|   |+|++.+.+                 
T Consensus        55 dli~v~~~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~--~gr~t---flpl~~~~~~~~~~~~~~~~~~l~~~  129 (213)
T 2wd5_B           55 NNFECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNL--PGEVT---FLPLNKLDVRDTAYPETNDAIPMISK  129 (213)
T ss_dssp             GSEECCGGGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTC--CCCEE---EEETTTCCCCCCCCCCCSSEEEGGGG
T ss_pred             HhcccCHHHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCC--CcceE---EEECcccCcccCCCCCCCCceeHHHH
Confidence            7888888999999774                    566654 2  68888   888775320                 


Q ss_pred             --------------hhhhhhHH-HHHHHHHhHh-hHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747          304 --------------DKDNLIME-KETVLRRVEE-GEKIAEDLRNSADQLNEEKLV-LGK  345 (748)
Q Consensus       304 --------------l~~~lv~e-l~~a~~~~~~-~~~~Vt~L~~l~g~l~~~~g~-~~~  345 (748)
                                    ||++++|+ ++.|...... ++++||    ++|+++.++|. +|+
T Consensus       130 v~~~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~~~~~~VT----ldG~~~~~~G~~tgG  184 (213)
T 2wd5_B          130 LRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCIT----LEGDQVSHRGALTGG  184 (213)
T ss_dssp             CEECGGGHHHHHHHHTTEEEESSHHHHHHHHHHSSCEEEC----TTCCEECTTSCEEEC
T ss_pred             ccCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCceEEe----CCCcEECCCeEEECC
Confidence                          78888998 9999655533 678999    99999999887 653

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.46  E-value=0.42  Score=42.10  Aligned_cols=63  Identities=17%  Similarity=0.206  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          357 MEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVE  419 (748)
Q Consensus       357 le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~  419 (748)
                      ++..+..++..+......+..+...+..+...+..+...-......-..+..++..+..++..
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKE   88 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE   88 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555555444444444443333444444444444444444433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.21  E-value=0.59  Score=41.19  Aligned_cols=18  Identities=17%  Similarity=0.462  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHhHH
Q 047747          598 SEYIIEVQILKEEIVNKT  615 (748)
Q Consensus       598 ~~~~~~l~~l~~~l~~~~  615 (748)
                      ..+..+|..+...+....
T Consensus        73 d~yEeqIk~L~~kLKEAE   90 (155)
T 2efr_A           73 DKYEEEIKVLSDKLKEAE   90 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A

Probab=96.05  E-value=3.1e-05  Score=73.12  Aligned_cols=75  Identities=20%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             HHHHhHHHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhH------------h------
Q 047747          262 EAESLNNDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDIS------------R------  303 (748)
Q Consensus       262 el~~~~~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~------------~------  303 (748)
                      +++.++++|..||+++                    .||+...  .||+|   |+|++.+.            +      
T Consensus        38 ~li~v~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~--~gr~t---flpl~~~~~~~~~~~~~~~~~g~~~~~  112 (186)
T 1gxj_A           38 NLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNE--AGRVT---ILPLDLIDGSFNRISGLENERGFVGYA  112 (186)
T ss_dssp             HHCBCCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHT--CCCEE---EEETTTCCCCCCCCTTGGGSTTEEEEH
T ss_pred             heeccCHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcC--CCceE---EEEccccCCCcccchhcccCCCchHHH
Confidence            8888888999998774                    6888887  89999   98876521            0      


Q ss_pred             -----------------hhhhhhHH-HHHHHHHhH---hhHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747          304 -----------------DKDNLIME-KETVLRRVE---EGEKIAEDLRNSADQLNEEKLV-LGK  345 (748)
Q Consensus       304 -----------------l~~~lv~e-l~~a~~~~~---~~~~~Vt~L~~l~g~l~~~~g~-~~~  345 (748)
                                       ||++++|+ ++.|.....   .++++||    ++|+++.++|. +|+
T Consensus       113 ~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~VT----ldG~~~~~~G~~~gG  172 (186)
T 1gxj_A          113 VDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIAT----LDGELISGRGAITGG  172 (186)
T ss_dssp             HHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEE----TTSCEECTTSCEEEE
T ss_pred             HHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEEe----CCCeEEcCCEEEECC
Confidence                             78888998 999965552   3678999    99999999887 654

>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1

Probab=95.99  E-value=4e-05  Score=74.15  Aligned_cols=75  Identities=20%  Similarity=0.204  Sum_probs=57.8

Q ss_pred             HHHHhHHHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhH------------h------
Q 047747          262 EAESLNNDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDIS------------R------  303 (748)
Q Consensus       262 el~~~~~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~------------~------  303 (748)
                      +++.|+++|..||+++                    .||+...  .||+|   |+|++.+.            +      
T Consensus        50 ~li~v~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~i~~lk~~~--~gr~~---~lpl~~~~~~~~~~~~~~~~~g~~~~~  124 (213)
T 1gxl_A           50 NLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNE--AGRVT---ILPLDLIDGSFNRISGLENERGFVGYA  124 (213)
T ss_dssp             GTCBCCHHHHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHT--CEEEE---EEETTTSCCCCCCCTTGGGSTTEEEEG
T ss_pred             heeeeCHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcC--CCceE---EEEchhcCCCCccchhhhcCCCcHHHH
Confidence            7778888899988774                    6888877  89998   88876521            0      


Q ss_pred             -----------------hhhhhhHH-HHHHHHHhH---hhHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747          304 -----------------DKDNLIME-KETVLRRVE---EGEKIAEDLRNSADQLNEEKLV-LGK  345 (748)
Q Consensus       304 -----------------l~~~lv~e-l~~a~~~~~---~~~~~Vt~L~~l~g~l~~~~g~-~~~  345 (748)
                                       ||++++|+ ++.|.....   ++.++||    ++|+++.++|+ +|+
T Consensus       125 ~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~~~~~~~VT----~~G~~~~~~G~~~gg  184 (213)
T 1gxl_A          125 VDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIAT----LDGELISGRGAITGG  184 (213)
T ss_dssp             GGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHHHTCSSCEEEC----TTSCEECTTSCEEEC
T ss_pred             HHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEe----cCCeEEcCCceEECC
Confidence                             77888888 999865542   3578999    99999999887 654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.63  E-value=0.63  Score=38.05  Aligned_cols=83  Identities=17%  Similarity=0.145  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 047747          146 ELKRRMTATSEEKEALNLEYQSALSRIQE-------AGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELN  218 (748)
Q Consensus       146 ~l~~~l~~l~~eke~l~~~~~~~~~~~~~-------le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~  218 (748)
                      .++.++..+..+++.....+......+..       .+.++..++.++..++..++.....+......++...+.....+
T Consensus         6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE   85 (101)
T 3u1c_A            6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444333333333       33333333333333333333333344444444444444444444


Q ss_pred             HHHHHHHHHH
Q 047747          219 REVSDMKRQL  228 (748)
Q Consensus       219 ~~l~~l~~~l  228 (748)
                      .++..+...+
T Consensus        86 ~ev~~L~Rri   95 (101)
T 3u1c_A           86 SEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.44  E-value=0.86  Score=37.23  Aligned_cols=33  Identities=21%  Similarity=0.019  Sum_probs=12.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047747          188 SLNTEKLKLTVENAELNQKLDAAGKIEAELNRE  220 (748)
Q Consensus       188 ~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~  220 (748)
                      .....+......+.........+...+..+.+.
T Consensus        62 ~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr   94 (101)
T 3u1c_A           62 QVLEELHKSEDSLLFAEENAAKAESEVASLNRR   94 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.28  E-value=1.3  Score=38.15  Aligned_cols=16  Identities=31%  Similarity=0.154  Sum_probs=5.7

Q ss_pred             hhhHHHHHHhhhhhHH
Q 047747          660 GFHLTEEKLGLLDGIF  675 (748)
Q Consensus       660 ~~~l~~~~~~l~~~i~  675 (748)
                      ...|......+...+.
T Consensus        99 ~~~L~~~kkkle~e~~  114 (129)
T 2fxo_A           99 NAELTAKKRKLEDECS  114 (129)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.95  E-value=1.1  Score=36.67  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 047747          146 ELKRRMTATSEEKEALNLEYQSA  168 (748)
Q Consensus       146 ~l~~~l~~l~~eke~l~~~~~~~  168 (748)
                      .++.++..+..+++.....+...
T Consensus         6 ~iKkKm~~lk~e~e~a~d~ae~~   28 (101)
T 3u59_A            6 AIKKKMQMLKLDKENAIDRAEQA   28 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.35  E-value=1.8  Score=35.40  Aligned_cols=61  Identities=21%  Similarity=0.274  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 047747          170 SRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTA  230 (748)
Q Consensus       170 ~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~  230 (748)
                      ......+.++..++..+..++..++.....+......++...+.....+.++..|+..+..
T Consensus        37 ~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql   97 (101)
T 3u59_A           37 DRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444445555555555555555555555555555555555555555443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.28  E-value=1.4  Score=52.53  Aligned_cols=9  Identities=11%  Similarity=0.213  Sum_probs=3.4

Q ss_pred             hhhHHHhhh
Q 047747           78 DNLRGELKK   86 (748)
Q Consensus        78 ~~~~~~~~~   86 (748)
                      +-+...+..
T Consensus       413 ~wlV~~iN~  421 (1080)
T 2dfs_A          413 NWIVDHVNK  421 (1080)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.53  E-value=1.7  Score=51.75  Aligned_cols=16  Identities=31%  Similarity=0.422  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHhhccCc
Q 047747           32 EIEDKFKKILKLVQDKD   48 (748)
Q Consensus        32 ~~~~~~~~~~~~~~~~~   48 (748)
                      -++.+ ..||.||+|+-
T Consensus       498 lie~~-~Gil~lLdee~  513 (1080)
T 2dfs_A          498 LIEAK-MGVLDLLDEEC  513 (1080)
T ss_dssp             HHHST-TSHHHHHHHHT
T ss_pred             HHhcC-Cceeeeccccc
Confidence            34444 56777776653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.72  E-value=1.7  Score=48.44  Aligned_cols=33  Identities=12%  Similarity=0.094  Sum_probs=11.7

Q ss_pred             HhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 047747          658 EEGFHLTEEKLGLLDGIFELEKTLTERGSELSS  690 (748)
Q Consensus       658 ~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~  690 (748)
                      .+...+...++.....+.++..++.....++..
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~  576 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQ  576 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=91.69  E-value=3.8  Score=31.82  Aligned_cols=32  Identities=22%  Similarity=0.157  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          147 LKRRMTATSEEKEALNLEYQSALSRIQEAGEL  178 (748)
Q Consensus       147 l~~~l~~l~~eke~l~~~~~~~~~~~~~le~e  178 (748)
                      ++.++..+..+++.....+......+...+..
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~   35 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEER   35 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444443333333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.64  E-value=3.7  Score=35.20  Aligned_cols=12  Identities=50%  Similarity=0.531  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHHH
Q 047747          403 IQDLMAESSQLK  414 (748)
Q Consensus       403 i~~l~~~~~~l~  414 (748)
                      ++.+..+++.+.
T Consensus        45 iq~L~~el~~l~   56 (129)
T 3tnu_B           45 IQRLRAEIDNVK   56 (129)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=90.06  E-value=4.3  Score=31.86  Aligned_cols=34  Identities=15%  Similarity=0.300  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 047747          623 EEIESLTARIKSLELEVASLGNQKSDLEEQMRLK  656 (748)
Q Consensus       623 ~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~l  656 (748)
                      .++..+...++.+.-...+|..++..+.+.+.|+
T Consensus        49 ~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A           49 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=89.90  E-value=6  Score=31.06  Aligned_cols=56  Identities=13%  Similarity=0.249  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          132 GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAE  187 (748)
Q Consensus       132 ~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~  187 (748)
                      .|+.++..+..+-..+.-.+..+....+.++..|+.....-...+.++..++..+.
T Consensus         4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD   59 (86)
T 3swk_A            4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD   59 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            44444444444444444444444444444444444444444444444443333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=89.45  E-value=6.9  Score=31.13  Aligned_cols=37  Identities=19%  Similarity=0.151  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          152 TATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAES  188 (748)
Q Consensus       152 ~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~  188 (748)
                      .....++..+...+......-...+.....+..++..
T Consensus        22 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe   58 (97)
T 2eqb_B           22 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED   58 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334433333333333344443333333333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=88.49  E-value=7  Score=29.96  Aligned_cols=65  Identities=25%  Similarity=0.247  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          174 EAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEAL  238 (748)
Q Consensus       174 ~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~  238 (748)
                      .++..|..+-..+.-+..++.+++.+...+......+......+..+...++.+....+..++.+
T Consensus        10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L   74 (81)
T 2jee_A           10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444433

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=88.19  E-value=9.7  Score=31.26  Aligned_cols=21  Identities=24%  Similarity=0.215  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 047747          146 ELKRRMTATSEEKEALNLEYQ  166 (748)
Q Consensus       146 ~l~~~l~~l~~eke~l~~~~~  166 (748)
                      .|+.+...+..+.+.++..|.
T Consensus         7 dL~~~~~~L~~E~e~~k~K~~   27 (111)
T 2v66_B            7 DLQADNQRLKYEVEALKEKLE   27 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=87.25  E-value=8.8  Score=29.71  Aligned_cols=22  Identities=14%  Similarity=0.335  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 047747          220 EVSDMKRQLTARSEEKEALNLE  241 (748)
Q Consensus       220 ~l~~l~~~l~~l~~e~~~~~~~  241 (748)
                      ++..++..+..++.+++.....
T Consensus        42 ev~~L~kKiq~lE~eld~~ee~   63 (81)
T 1ic2_A           42 ELVALQKKLKGTEDELDKYSES   63 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=86.27  E-value=16  Score=31.60  Aligned_cols=96  Identities=17%  Similarity=0.170  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 047747          137 LDAATLEVSELKRR--MTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIE  214 (748)
Q Consensus       137 l~~~~~ei~~l~~~--l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~  214 (748)
                      ..-....+..+...  ...+..++-.+...++-.. .+-.+......+...+..+..++..+..++.....+++.+.+.+
T Consensus        34 A~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiad-El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~  112 (138)
T 3hnw_A           34 ASYINNKITEFNKEESYRRMSAELRTDMMYLNIAD-DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI  112 (138)
T ss_dssp             HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555532  4444444444444443222 22233334444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 047747          215 AELNREVSDMKRQLTARSE  233 (748)
Q Consensus       215 ~~l~~~l~~l~~~l~~l~~  233 (748)
                      ..+..++..++..+..++.
T Consensus       113 ~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A          113 KELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444433

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=85.68  E-value=12  Score=29.93  Aligned_cols=29  Identities=31%  Similarity=0.413  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          214 EAELNREVSDMKRQLTARSEEKEALNLEY  242 (748)
Q Consensus       214 ~~~l~~~l~~l~~~l~~l~~e~~~~~~~l  242 (748)
                      -...+..+..+...+.....++..+..++
T Consensus        55 E~~~w~eyn~~~~ql~e~~dE~~Sl~~q~   83 (96)
T 3q8t_A           55 EAQYQREYSEFKRQQLELDDELKSVENQM   83 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=85.17  E-value=11  Score=30.53  Aligned_cols=40  Identities=10%  Similarity=-0.052  Sum_probs=25.6

Q ss_pred             HHHHhHHHHHHHhhhh---hhhhHHHHHHHHhhcchHhhhccC
Q 047747          684 RGSELSSLQEKHINVE---NKASAQITAMAAQASLPQISRNGA  723 (748)
Q Consensus       684 ~~~~l~~l~~~l~~~~---~~a~~~~~~l~~~i~~Lk~~l~~l  723 (748)
                      ++...+-+...|....   ..+.+....|..++..|++++..+
T Consensus        67 LkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l  109 (110)
T 2v4h_A           67 LKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL  109 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            3555555555555441   345667778888888888877654

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=85.12  E-value=13  Score=29.76  Aligned_cols=42  Identities=12%  Similarity=0.214  Sum_probs=20.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          202 ELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQ  243 (748)
Q Consensus       202 ~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~  243 (748)
                      .+...-...+.........+..+...+..+...+.-....+.
T Consensus        50 ~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd   91 (96)
T 3q8t_A           50 RLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD   91 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444455555555555555555555555555544443

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=84.59  E-value=15  Score=30.08  Aligned_cols=24  Identities=13%  Similarity=0.213  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHhHhhHHHH
Q 047747          520 LSRIENLTAQINDLLADLDSLHNE  543 (748)
Q Consensus       520 ~~~i~~l~~~i~~l~~el~~l~~~  543 (748)
                      ...+..+......+..++..+..+
T Consensus        76 q~qL~~Lt~~Re~V~~eL~rLQ~e   99 (112)
T 1x79_B           76 QEQMAVLMQSREQVSEELVRLQKD   99 (112)
T ss_dssp             HHHHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333334444434343444443333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=84.38  E-value=16  Score=30.02  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 047747          521 SRIENLTAQINDLLADLDSLHNEKSKLEEH  550 (748)
Q Consensus       521 ~~i~~l~~~i~~l~~el~~l~~~~~~l~~~  550 (748)
                      ..+..++.++..+......+...+..++..
T Consensus        35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~   64 (111)
T 2v66_B           35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA   64 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444444444444333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.49  E-value=22  Score=31.05  Aligned_cols=25  Identities=20%  Similarity=0.195  Sum_probs=9.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHH
Q 047747          580 RGQKAVLEVQLEEKTREISEYIIEV  604 (748)
Q Consensus       580 ~~~~~~l~~~l~~~~~~~~~~~~~l  604 (748)
                      ..+...+..++.....-+..++.++
T Consensus       114 e~r~~~L~~ql~e~~~~l~~lq~ql  138 (154)
T 2ocy_A          114 EILNKRLTEQLREKDTLLDTLTLQL  138 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=83.10  E-value=22  Score=30.84  Aligned_cols=61  Identities=16%  Similarity=0.096  Sum_probs=32.5

Q ss_pred             HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 047747          448 QVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTT  508 (748)
Q Consensus       448 el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l  508 (748)
                      .+..|+.++..+..++..+...+......+..++.++..++.++..++..+..++.+-..+
T Consensus        69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L  129 (152)
T 3a7p_A           69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL  129 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555555555555555555555555555444433333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.88  E-value=8.7  Score=32.66  Aligned_cols=36  Identities=14%  Similarity=0.124  Sum_probs=12.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747          207 LDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEY  242 (748)
Q Consensus       207 l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l  242 (748)
                      +.........++.....+...+.....-+..++.++
T Consensus        91 Va~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL  126 (135)
T 2e7s_A           91 VADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQL  126 (135)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTHHHHCC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444344333333

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=80.71  E-value=19  Score=28.37  Aligned_cols=12  Identities=8%  Similarity=0.335  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHHH
Q 047747          142 LEVSELKRRMTA  153 (748)
Q Consensus       142 ~ei~~l~~~l~~  153 (748)
                      .++..++..+..
T Consensus        21 eel~~lke~l~k   32 (89)
T 3bas_A           21 KQMDKMKEDLAK   32 (89)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=80.71  E-value=28  Score=37.17  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 047747          478 KQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEK  544 (748)
Q Consensus       478 ~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~~~~~~~~~~i~~l~~~i~~l~~el~~l~~~~  544 (748)
                      ..++.++.+++..+..++.+-..+....-.+...++...+.-..++.+++.+|..+..+++.++.++
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (471)
T 3mq9_A          400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV  466 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444555544444444444444444333333344444444444444444444443

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=80.45  E-value=13  Score=31.18  Aligned_cols=19  Identities=16%  Similarity=0.361  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 047747          144 VSELKRRMTATSEEKEALN  162 (748)
Q Consensus       144 i~~l~~~l~~l~~eke~l~  162 (748)
                      |..|+..+..+..+.+.+.
T Consensus        17 Ie~Lkreie~lk~ele~l~   35 (120)
T 3i00_A           17 IERLYREISGLKAQLENMK   35 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	748
d1gxja_	161	Smc hinge domain {Thermotoga maritima [TaxId: 2336	97.46

>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Smc hinge domain
superfamily: Smc hinge domain
family: Smc hinge domain
domain: Smc hinge domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=1.8e-07  Score=83.71  Aligned_cols=76  Identities=18%  Similarity=0.184  Sum_probs=63.7

Q ss_pred             HHHHHhHHHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhHh-----------------
Q 047747          261 LEAESLNNDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDISR-----------------  303 (748)
Q Consensus       261 ~el~~~~~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~-----------------  303 (748)
                      .|++.++++|..||+++                    .+|+++.  .||+|   |+|++.+.+                 
T Consensus        24 ~dli~v~~~y~~Ave~aLG~~l~~vVV~~~~~A~~~i~~lk~~~--~Gr~t---fipl~~i~~~~~~~~~~~~~~~~v~~   98 (161)
T d1gxja_          24 SNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNE--AGRVT---ILPLDLIDGSFNRISGLENERGFVGY   98 (161)
T ss_dssp             HHHCBCCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHT--CCCEE---EEETTTCCCCCCCCTTGGGSTTEEEE
T ss_pred             HHhCccCHHHHHHHHHHhhhhhceEEECCHHHHHHHHHHHhhcc--CceEE---EEeccccccccccccccccCCCcchh
Confidence            38999999999999884                    8999988  99999   999987643                 


Q ss_pred             ------------------hhhhhhHH-HHHHHHHhHh---hHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747          304 ------------------DKDNLIME-KETVLRRVEE---GEKIAEDLRNSADQLNEEKLV-LGK  345 (748)
Q Consensus       304 ------------------l~~~lv~e-l~~a~~~~~~---~~~~Vt~L~~l~g~l~~~~g~-~~~  345 (748)
                                        ||++++|+ ++.|......   +.++||    ++|+++.++|. +|+
T Consensus        99 ~~dlV~~~~~~~~~~~~llg~~~iv~~l~~A~~l~~~~~~~~~~VT----~dGd~~~~~G~i~GG  159 (161)
T d1gxja_          99 AVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIAT----LDGELISGRGAITGG  159 (161)
T ss_dssp             HHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEE----TTSCEECTTSCEEEE
T ss_pred             HHHhccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEe----CCCcEECCCeeEeCC
Confidence                              99999999 9999665532   567899    99999999887 654