Citrus Sinensis ID: 047750

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MAASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSINEEHVSVLKEVEAVTLATFEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHccEEcccccccccccHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccEccHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maasyhtrsnsfptrshpqiLEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLgnlkgvenecspsineEHVSVLKEVEAVTLATFEYLLSFisgsrtpsklSRFALVTKLirpkriacqedqTEMNEFEKVDAALSTVVghktiksdNIIYMQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN
Flexible Loop (DISEMBL)
maasyhtrsnsfptrshpqiLEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALglqsvlrrrrgdeteltsEIKKYLASRKAMRKAINKTlgnlkgvenecsPSINEEHVSVLKEVEAVTLATFEYLLSfisgsrtpsklSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALStvvghktiksdNIIYMQNQLKEMESSIQDLEEGLESLSrrlikarvpllniltn
Low Complexity Region (SEG)
MAASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSINEEHVSVLKEVEAVTLATFEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESSIQDleegleslsrrlIKARVPLLNILTN
Disordered region (IsUnstruct)
*************************************************DLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGL*******************************INKTLGNLKGV*******INEEHVSVLKEVEAVTLATFEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTIKSDNIIYMQN**********************LIKARVPLLNI***
Disordered Region (DISOPRED)
*****HT**NSFPTRSHPQILEVEEHLRRL***************NGLQDLHDSVEKILQLPLVQQ*********WVDELLNGSFKILDVCSTAQNALLQMKESALGLQ************LTSEIKKYLASRKAMRKAINKT*****************EHVSVLKEVEAVTLATFEYLLS*************************************FEKVDAA********************QLKEMESSIQDLEEGLESLSRRLIKARVPLLNILT*
Disordered Region (DISEMBL)
**************RSHPQILEVEEHL****************ELNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSINEEHVSVLKEVEAVTLATFEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN
Disordered Region (DISPRO)
***********FPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSINEEHVSVLKEVEAVTLATFEYLLSFISGSRT***LSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSINEEHVSVLKEVEAVTLATFEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTIKSDNxxxxxxxxxxxxxxxxxxxxxxxxxxxxLIKARVPLLNILTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
147781907	297	hypothetical protein VITISV_037143 [Viti	0.989	0.939	0.546	1e-77
225428177	297	PREDICTED: uncharacterized protein LOC10	0.989	0.939	0.532	5e-75
224078486	293	predicted protein [Populus trichocarpa]	0.992	0.955	0.537	2e-74
297744527	294	unnamed protein product [Vitis vinifera]	0.982	0.942	0.534	3e-73
225428181	297	PREDICTED: uncharacterized protein LOC10	0.985	0.936	0.524	1e-72
297744526	285	unnamed protein product [Vitis vinifera]	0.957	0.947	0.520	2e-72
147781909	297	hypothetical protein VITISV_037145 [Viti	0.985	0.936	0.520	9e-72
224105079	296	predicted protein [Populus trichocarpa]	0.992	0.945	0.518	3e-70
147781908	298	hypothetical protein VITISV_037144 [Viti	0.989	0.936	0.513	3e-69
225428187	298	PREDICTED: uncharacterized protein LOC10	0.989	0.936	0.506	5e-69

>gi|147781907|emb|CAN69929.1| hypothetical protein VITISV_037143 [Vitis vinifera]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/289 (54%), Positives = 217/289 (75%), Gaps = 10/289 (3%)

Query: 3   ASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLP 62
           A YH RS S P+R HP I E +EHL RLR+S+A S+SS+ H+ +GL+DLHD V+ +L LP
Sbjct: 10  AYYHARSISLPSRPHPLIPEFDEHLCRLRASEATSSSSISHKFSGLKDLHDCVDNLLLLP 69

Query: 63  LVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETEL 122
             QQ+LA+ H ++WVDELL+GS ++LD+C TA++ALLQ +E A  LQS +RRRRG E  +
Sbjct: 70  FTQQSLAQYHHEQWVDELLDGSLRLLDLCDTAKDALLQTREGAHELQSSMRRRRGGENGI 129

Query: 123 TSEIKKYLASRKAMRKAINKTLGNLKGVENECSPS-INEE-----HVSVLKEVEAVTLAT 176
           +SEI KYL SRK ++KAI+K L NLKG+ N+CS S +N +      VS+L+EVE VTL  
Sbjct: 130 SSEIGKYLTSRKKIKKAIHKVLRNLKGMGNKCSFSALNRDPETLSTVSMLREVETVTLTV 189

Query: 177 FEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTI 236
            E LLS I+G    SK S ++LV+KL++ KR+AC+E + +++EFEKVDAAL T++GHK  
Sbjct: 190 LEALLSSIAGVTAQSKRSSWSLVSKLMQHKRVACEEAEADLSEFEKVDAALCTLLGHKN- 248

Query: 237 KSDNIIY---MQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN 282
           KS N+++   + N++ ++E SIQDLEEG+E LSRRLIK RV LLNIL++
Sbjct: 249 KSVNVVHDDNVHNEVAKLELSIQDLEEGIEFLSRRLIKTRVSLLNILSH 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428177|ref|XP_002281652.1| PREDICTED: uncharacterized protein LOC100255496 [Vitis vinifera]

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 154/289 (53%), Positives = 214/289 (74%), Gaps = 10/289 (3%)

Query: 3   ASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLP 62
           A YH RS S P+R HP I E +EHL RLR+S+A S+SS+ H+ +GL+DLHD V+ +L LP
Sbjct: 10  AYYHARSISLPSRPHPLIPEFDEHLCRLRASEATSSSSISHKFSGLKDLHDCVDNLLLLP 69

Query: 63  LVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETEL 122
             QQ+LA+ H ++W+DELL+GS ++LD+C TA++ALLQ +E A  LQS +RRRRG E  +
Sbjct: 70  FTQQSLAQYHHEQWIDELLDGSLRLLDLCDTAKDALLQTREGANELQSSMRRRRGSENGI 129

Query: 123 TSEIKKYLASRKAMRKAINKTLGNLKGVENECSPS-INEE-----HVSVLKEVEAVTLAT 176
           +SEI KYL SRK ++KAI+K L NLKG+ N+CS S +N +      V +L+EVE VTL  
Sbjct: 130 SSEIGKYLTSRKKVKKAIHKALRNLKGMGNKCSFSALNRDPETLSTVRMLREVETVTLTV 189

Query: 177 FEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTI 236
            E LLS I+G    SK S ++LV+KL++ KR+AC+E + +++EFEKVD AL T++GHK  
Sbjct: 190 IEALLSSIAGLTAQSKRSSWSLVSKLMQHKRVACEEAEADLSEFEKVDTALCTLLGHKN- 248

Query: 237 KSDNIIY---MQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN 282
           KS N+++   + N++ ++E SIQDLEEG+E LSR LIK RV LLNIL++
Sbjct: 249 KSVNVMHVDNVHNEVAKLELSIQDLEEGIEFLSRHLIKTRVSLLNILSH 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078486|ref|XP_002305548.1| predicted protein [Populus trichocarpa] gi|222848512|gb|EEE86059.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 157/292 (53%), Positives = 210/292 (71%), Gaps = 12/292 (4%)

Query: 3   ASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSS--LGHELNGLQDLHDSVEKILQ 60
           A YHTRSNS P+R HP   ++ EH  RL +SQA S+SS  + H+L  LQDLHD V+K++ 
Sbjct: 2   AFYHTRSNSLPSRPHPLTSQINEHFSRLNASQATSSSSSSICHKLCCLQDLHDCVDKLIL 61

Query: 61  LPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDET 120
           LPL Q++LA+   +KWVD +L+GS  +LDVCS A++ALLQ KE A  LQS++RRRRG+E 
Sbjct: 62  LPLTQKSLAQEQNEKWVDNVLDGSLGVLDVCSMARDALLQTKECAQELQSIMRRRRGNEI 121

Query: 121 ELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPS-INEEH-----VSVLKEVEAVTL 174
             + EI+ Y  SRK ++K I+K L +LK + N+ S S  N++H     VS+LKEVEAVTL
Sbjct: 122 GFSGEIQTYSTSRKVVKKTIHKALRDLKDMGNKSSLSPFNKDHEAVAIVSMLKEVEAVTL 181

Query: 175 ATFEYLLSFIS-GSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGH 233
              E LL+ IS GS+  SKLS ++LV+KL+ PKRIAC+ ++ E+NEFEK+D+AL +++  
Sbjct: 182 IVLESLLTLISGGSKAQSKLSGWSLVSKLMHPKRIACEAEEAEVNEFEKLDSALHSLIYK 241

Query: 234 KTIKSDNIIYMQN---QLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN 282
           KT KSDN + ++N   QLKE +  IQ+LEEGLESL RRLIK RV LLN   N
Sbjct: 242 KTSKSDNTVPVENVQHQLKEFDLCIQELEEGLESLYRRLIKTRVSLLNTFVN 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744527|emb|CBI37789.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 154/288 (53%), Positives = 207/288 (71%), Gaps = 11/288 (3%)

Query: 3   ASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLP 62
           A YH RS S P+R HP I E +EHL RLR+S+A S+SS+ H+ +GL+DLHD V+ +L LP
Sbjct: 10  AYYHARSISLPSRPHPLIPEFDEHLCRLRASEATSSSSISHKFSGLKDLHDCVDNLLLLP 69

Query: 63  LVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETEL 122
             QQ+LA+ H ++W+DELL+GS ++LD+C TA++ALLQ +E A  LQS +RRRRG E  +
Sbjct: 70  FTQQSLAQYHHEQWIDELLDGSLRLLDLCDTAKDALLQTREGANELQSSMRRRRGSENGI 129

Query: 123 TSEIKKYLASRKAMRKAINKTLGNLKGVENECSPS-INEE-----HVSVLKEVEAVTLAT 176
           +SEI KYL SRK ++KAI+K L NLKG+ N+CS S +N +      V +L+EVE VTL  
Sbjct: 130 SSEIGKYLTSRKKVKKAIHKALRNLKGMGNKCSFSALNRDPETLSTVRMLREVETVTLTV 189

Query: 177 FEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALST--VVGHK 234
            E LLS I+G    SK S ++LV+KL++ KR+AC+E + +++EFEKVD AL         
Sbjct: 190 IEALLSSIAGLTAQSKRSSWSLVSKLMQHKRVACEEAEADLSEFEKVDTALVPFKAFNQN 249

Query: 235 TIKSDNIIYMQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN 282
            +  DN+   QN+L ++ESSIQDLEEGLE LSRRLIK RV LLNIL +
Sbjct: 250 QVHVDNV---QNKLGKLESSIQDLEEGLEFLSRRLIKTRVSLLNILNH 294

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428181|ref|XP_002281692.1| PREDICTED: uncharacterized protein LOC100245194 [Vitis vinifera]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 151/288 (52%), Positives = 214/288 (74%), Gaps = 10/288 (3%)

Query: 3   ASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLP 62
           A YH RS S P+R HP I E +EHLRRLR+S+A S+SS+ H+L+GL+DLHD V+ +L +P
Sbjct: 10  ACYHARSISLPSRPHPLIPEFDEHLRRLRASEATSSSSISHKLSGLRDLHDCVDDLLLMP 69

Query: 63  LVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETEL 122
           L QQ LA+   ++WVDELL+GS ++LD+CSTA++ALLQ +E A  LQS +RRRRG E  +
Sbjct: 70  LTQQILAQYRHEQWVDELLDGSLRLLDICSTAKDALLQTREGAQELQSRMRRRRGSENGI 129

Query: 123 TSEIKKYLASRKAMRKAINKTLGNLKGVENECSPS-INEE-----HVSVLKEVEAVTLAT 176
           ++EI+KYL+SRK ++KAI+K L NL G+E EC  S +N++      VS+L+EVE +TL  
Sbjct: 130 SNEIEKYLSSRKKVKKAIHKALRNLTGMEKECRFSTLNKDTETLSMVSMLREVETITLTV 189

Query: 177 FEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTI 236
              LLS ++G+   SK S ++LV+KL++ KR+AC+E +++  EFE VDAAL T++ +K  
Sbjct: 190 LGALLSSVAGAAAQSKRSGWSLVSKLMQHKRVACEEAESDHGEFEMVDAALCTILCNKN- 248

Query: 237 KSDNIIY---MQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILT 281
           KS N+++   + N+L ++E SI DLEE +E LSRRLIK RV LLNIL+
Sbjct: 249 KSVNLVHADDVHNELGKLELSIHDLEEEIELLSRRLIKTRVSLLNILS 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744526|emb|CBI37788.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/286 (52%), Positives = 209/286 (73%), Gaps = 16/286 (5%)

Query: 3   ASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLP 62
           A YH RS S P+R HP I E +EHLRRLR+S+A S+SS+ H+L+GL+DLHD V+ +L +P
Sbjct: 10  ACYHARSISLPSRPHPLIPEFDEHLRRLRASEATSSSSISHKLSGLRDLHDCVDDLLLMP 69

Query: 63  LVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETEL 122
           L QQ LA+   ++WVDELL+GS ++LD+CSTA++ALLQ +E A  LQS +RRRRG E  +
Sbjct: 70  LTQQILAQYRHEQWVDELLDGSLRLLDICSTAKDALLQTREGAQELQSRMRRRRGSENGI 129

Query: 123 TSEIKKYLASRKAMRKAINKTLGNLKGVENECSPS-INEE-----HVSVLKEVEAVTLAT 176
           ++EI+KYL+SRK ++KAI+K L NL G+E EC  S +N++      VS+L+EVE +TL  
Sbjct: 130 SNEIEKYLSSRKKVKKAIHKALRNLTGMEKECRFSTLNKDTETLSMVSMLREVETITLTV 189

Query: 177 FEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTI 236
              LLS ++G+   SK S ++LV+KL++ KR+AC+E +++  EFE VDAAL T++ +K  
Sbjct: 190 LGALLSSVAGAAAQSKRSGWSLVSKLMQHKRVACEEAESDHGEFEMVDAALCTILCNK-- 247

Query: 237 KSDNIIYMQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN 282
                      + ++ESSIQDLEEG+E LSRRLIK RV LLNIL++
Sbjct: 248 --------NKSVAKLESSIQDLEEGIEFLSRRLIKTRVSLLNILSH 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781909|emb|CAN69931.1| hypothetical protein VITISV_037145 [Vitis vinifera]

 Score =  276 bits (705), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 150/288 (52%), Positives = 213/288 (73%), Gaps = 10/288 (3%)

Query: 3   ASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQLP 62
           A YH RS S P+R HP I E +EHLRRLR+S+A S+SS+ H+L+GL+DLHD V+ +L +P
Sbjct: 10  ACYHARSISLPSRPHPLIPEFDEHLRRLRASEATSSSSISHKLSGLRDLHDCVDDLLLMP 69

Query: 63  LVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETEL 122
           L QQ LA+   ++WVDELL+GS ++LD+CSTA++ALLQ +E A  LQS + RRRG E  +
Sbjct: 70  LTQQILAQYRHEQWVDELLDGSLRLLDICSTAKDALLQTREGAQELQSRMXRRRGSENGI 129

Query: 123 TSEIKKYLASRKAMRKAINKTLGNLKGVENECSPS-INEE-----HVSVLKEVEAVTLAT 176
           ++EI+KYL+SRK ++KAI+K L NL G+E EC  S +N++      VS+L+EVE +TL  
Sbjct: 130 SNEIEKYLSSRKKVKKAIHKALRNLTGMEKECRFSTLNKDTETLSMVSMLREVETITLTV 189

Query: 177 FEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTI 236
              LLS ++G+   SK S ++LV+KL++ KR+AC+E +++  EFE VDAAL T++ +K  
Sbjct: 190 LGALLSSVAGAAAQSKRSGWSLVSKLMQHKRVACEEAESDHGEFEMVDAALCTILCNKN- 248

Query: 237 KSDNIIY---MQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILT 281
           KS N+++   + N+L ++E SI DLEE +E LSRRLIK RV LLNIL+
Sbjct: 249 KSVNLVHADDVHNELGKLELSIHDLEEEIELLSRRLIKTRVSLLNILS 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105079|ref|XP_002313679.1| predicted protein [Populus trichocarpa] gi|222850087|gb|EEE87634.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 153/295 (51%), Positives = 210/295 (71%), Gaps = 15/295 (5%)

Query: 3   ASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQA-----ASTSSLGHELNGLQDLHDSVEK 57
           A +H RSNS P+R HP   +++EH  RL +SQ      +S+SS+ H+L+ LQDLHD V+K
Sbjct: 2   ALHHARSNSLPSRPHPLSSQIDEHFSRLNASQVISSSSSSSSSICHKLSCLQDLHDCVDK 61

Query: 58  ILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRG 117
           ++ LPL Q+ LA+   +KWVD++L+GS ++LDVCS A +ALLQ KE A  LQS++RRRRG
Sbjct: 62  LILLPLTQKYLAQEQNEKWVDDVLDGSLRVLDVCSMATDALLQTKECAQELQSIMRRRRG 121

Query: 118 DETELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPS-INEEH-----VSVLKEVEA 171
           +E  ++SEIKKYL SRK ++  I+K L  LK +EN+ S S  N++H     VS+LKEVEA
Sbjct: 122 NEIGVSSEIKKYLTSRKVVKNTIHKALRGLKYLENKSSLSPFNKDHEAVAVVSMLKEVEA 181

Query: 172 VTLATFEYLLSFIS-GSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTV 230
            TL   E LL+ IS G++  SKLS ++LV+KL+  KRIA + ++TE+NEFEK+D+AL T+
Sbjct: 182 ATLTVLESLLTLISGGAKAQSKLSGWSLVSKLMHHKRIARETEETEVNEFEKLDSALHTL 241

Query: 231 VGHKTIKSDNIIYMQN---QLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN 282
           +  KT KSDN   ++N   QLK+ +   Q+LEEGLE+L RRLIK RV LLN   N
Sbjct: 242 IYQKTSKSDNTGSLENVQQQLKDFDLCNQELEEGLENLYRRLIKTRVSLLNTFVN 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781908|emb|CAN69930.1| hypothetical protein VITISV_037144 [Vitis vinifera]

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 149/290 (51%), Positives = 210/290 (72%), Gaps = 11/290 (3%)

Query: 3   ASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELN-GLQDLHDSVEKILQL 61
           ASYH RS S P+R HP I E +E L RLR+S+A S+SS       GL+D+HD V+ +L L
Sbjct: 10  ASYHARSISLPSRPHPLIPEFDELLCRLRASEATSSSSSVSHKLSGLRDVHDCVBDLLLL 69

Query: 62  PLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETE 121
           P  QQ LA+   +KWVDELL+GS ++LD+C  A+++LLQ +E A  LQS++RRRRG E  
Sbjct: 70  PFTQQTLAQNRHEKWVDELLDGSLRLLDICGAAKDSLLQTREGAHELQSIMRRRRGTENG 129

Query: 122 LTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPS-INEE-----HVSVLKEVEAVTLA 175
           ++SEI  YL SRK ++K I+K L NLKG++++C  S +N++      VS+L+EVE VTL 
Sbjct: 130 ISSEIGSYLTSRKKVKKTIHKCLRNLKGMKSKCGFSALNKDTKILSMVSMLREVETVTLT 189

Query: 176 TFEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKT 235
             E LLS I+G    SK + ++LV+KL++ KR+AC+E + E++EFEKVDAAL T++ +K 
Sbjct: 190 VLEALLSLIAGPAAGSKTTGWSLVSKLMQHKRVACEEAEAEISEFEKVDAALCTILANKN 249

Query: 236 IKSDNIIY---MQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN 282
            KS N+++   + N++ ++ESSIQDLEEG+E LSRRLIK RV LLNIL++
Sbjct: 250 -KSVNVVHADNVHNEVAKLESSIQDLEEGIEFLSRRLIKTRVSLLNILSH 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428187|ref|XP_002281737.1| PREDICTED: uncharacterized protein LOC100257230 [Vitis vinifera] gi|297744524|emb|CBI37786.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 147/290 (50%), Positives = 212/290 (73%), Gaps = 11/290 (3%)

Query: 3   ASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLG-HELNGLQDLHDSVEKILQL 61
           + YH RS S P+R HP I E +EHL RL+  ++  +SS   H+L+GL+D+HD V+ +L L
Sbjct: 10  SQYHVRSISLPSRPHPLIPEFDEHLCRLKVPESTCSSSSISHKLSGLKDVHDCVDDLLLL 69

Query: 62  PLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETE 121
           PL QQALA+   +KWVDELL GS K+LDVC TA++ALLQ ++ A  LQS +RRRRG +  
Sbjct: 70  PLTQQALAQNCLEKWVDELLEGSLKLLDVCGTAKDALLQTRQHAYELQSSIRRRRGGKNG 129

Query: 122 LTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPS-INEE-----HVSVLKEVEAVTLA 175
           +++E+++YL SRK + KAI+K L  LKG+EN+CS S +N++      VS+L+EVE VT+ 
Sbjct: 130 ISTEVEEYLTSRKKVVKAIHKALKTLKGMENKCSFSPLNKDPETISMVSMLREVETVTVT 189

Query: 176 TFEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKT 235
             E LLS I+G+   SK S ++LV+ L+  KR+A ++   +++EFEKVDAAL  ++GHK 
Sbjct: 190 VLESLLSSIAGATARSKPSGWSLVSTLMHQKRVAFEDAAVDLSEFEKVDAALYPLIGHKG 249

Query: 236 IKSDNIIY---MQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNILTN 282
            +S N+++   ++N+L+++ESSIQDLEEG+E L RRLIK RV LLNIL++
Sbjct: 250 -RSVNLVHVDRVRNELEKLESSIQDLEEGIEFLPRRLIKTRVSLLNILSH 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2827681	263	AT2G17080 "AT2G17080" [Arabido	0.854	0.916	0.432	1.2e-51
TAIR|locus:2827661	263	AT2G17070 "AT2G17070" [Arabido	0.854	0.916	0.428	4.1e-49
TAIR|locus:2132826	253	AT4G35200 "AT4G35200" [Arabido	0.741	0.826	0.444	2.8e-43
TAIR|locus:2132831	250	AT4G35210 "AT4G35210" [Arabido	0.726	0.82	0.443	3.2e-42
TAIR|locus:2127928	284	AT4G35690 "AT4G35690" [Arabido	0.946	0.940	0.283	2.2e-27
TAIR|locus:2081800	277	AT3G51400 "AT3G51400" [Arabido	0.950	0.967	0.320	1.6e-24
TAIR|locus:2827911	292	AT2G17680 "AT2G17680" [Arabido	0.936	0.904	0.285	1.8e-23
TAIR|locus:2127958	283	AT4G35710 "AT4G35710" [Arabido	0.925	0.922	0.275	1.1e-21
TAIR|locus:2128033	503	AT4G35680 [Arabidopsis thalian	0.953	0.534	0.289	1.4e-18
TAIR|locus:2128008	288	AT4G35660 "AT4G35660" [Arabido	0.865	0.847	0.292	2.9e-16

TAIR|locus:2827681 AT2G17080 "AT2G17080" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 112/259 (43%), Positives = 182/259 (70%)

Query:     1 MAASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSS---LGHELNGLQDLHDSVEK 57
             MA S+H RSNSFP+RSHPQ   V+E L RLRSS+ AS+SS   +   L+ LQ+LH+S++K
Sbjct:     1 MAVSFHVRSNSFPSRSHPQAAHVDEQLARLRSSEQASSSSSSSICQRLDNLQELHESLDK 60

Query:    58 ILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRG 117
             ++  P+ QQAL++ H KK V++LL+GS +ILD+C+ +++AL +MKE  + +QS+LRR+RG
Sbjct:    61 LISRPVTQQALSQEHNKKAVEQLLDGSLRILDLCNISKDALSEMKEGLMEIQSILRRKRG 120

Query:   118 DETELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSINEEHVSVLKEVEAVTLATF 177
             D   L+ E+KKYL SRK+++K+  K   +LK  + E +   N++ ++V  E EA+TL+ F
Sbjct:   121 D---LSEEVKKYLTSRKSLKKSFQKVQKSLKVTQAEDN---NDDTLAVFGEAEAITLSLF 174

Query:   178 EYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTIK 237
             + LLS++SGS+T SK S   +V+KL+  K++ C+  +   NEF KVD+   +    KT+K
Sbjct:   175 DSLLSYMSGSKTCSKWS---VVSKLMNKKKVTCEAQE---NEFTKVDSEFQS---EKTLK 225

Query:   238 SDNIIYMQNQLKEMESSIQ 256
              D++  +++ ++++E  ++
Sbjct:   226 MDDVQNLESCIQDLEDGLE 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2827661 AT2G17070 "AT2G17070" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 111/259 (42%), Positives = 175/259 (67%)

Query:     1 MAASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSS---LGHELNGLQDLHDSVEK 57
             MA S+H RS+S+P+  HPQ   V+E L RLRSS+  STSS   +   L+ LQ+LH+S++K
Sbjct:     1 MAVSFHVRSHSYPSIPHPQAAHVDEQLARLRSSEETSTSSSSSICQRLDNLQELHESLDK 60

Query:    58 ILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRG 117
             +++LP+ QQAL +   KK V++LL+GS KILDVC+ +++AL QMKE  + +QS+LRR+RG
Sbjct:    61 LIRLPVTQQALGQEKNKKDVEQLLDGSLKILDVCNISKDALSQMKEGLMEIQSILRRKRG 120

Query:   118 DETELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSINEEHVSVLKEVEAVTLATF 177
             D   L+ E+KKYLASRK+ +K   K   +LK  + E +    ++ ++V  E EAVT+A F
Sbjct:   121 D---LSGEVKKYLASRKSFKKTFQKVQKSLKAAQAEDN---KDKSLAVFGEAEAVTIAMF 174

Query:   178 EYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTIK 237
             + L S++SGS+T SK S   +V+KL+  K+I C+  +   NEF KVD+   +    KT+K
Sbjct:   175 DSLFSYMSGSKTCSKWS---VVSKLMNKKKITCEAQE---NEFTKVDSEFQS---EKTLK 225

Query:   238 SDNIIYMQNQLKEMESSIQ 256
              +++  +++ +++ E  ++
Sbjct:   226 MEDVQILESCIQDFEDGLE 244

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2132826 AT4G35200 "AT4G35200" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 100/225 (44%), Positives = 152/225 (67%)

Query:     1 MAASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQ 60
             MA S+H RSNS+P+R HPQ   V+E L RLRSS +AS+SS+   L+ LQDLHDS+EK+++
Sbjct:     1 MAVSFHVRSNSYPSRQHPQAAHVDEQLTRLRSSDSASSSSICQRLSNLQDLHDSLEKMIR 60

Query:    61 LPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDET 120
             L +   AL++      +++LL+GS +ILD+C+ A++A+ QMKE  + +QS+LRR+ GD  
Sbjct:    61 LSVTNLALSQDQ----IEKLLDGSLRILDLCNIAKDAISQMKEGLMEIQSILRRKPGD-- 114

Query:   121 ELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSINEEHVSVLKEVEAVTLATFEYL 180
              L+ E+KKYL SRK ++K++ K + +LK  +++   S N   V V    EAVT+A FE L
Sbjct:   115 -LSGEVKKYLVSRKFLKKSLQKVIKSLKVCQSK--DSTNASLV-VFGRAEAVTMALFESL 170

Query:   181 LSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDA 225
              SF+SGS+   K S   LV+K++   ++ C+    E NEF ++D+
Sbjct:   171 FSFMSGSKACGKWS---LVSKMMSQNKVTCE---AEANEFTRIDS 209

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2132831 AT4G35210 "AT4G35210" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 98/221 (44%), Positives = 147/221 (66%)

Query:     1 MAASYHTRSNSFPTRSHPQILEVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKILQ 60
             MA S+H RS+S+P+R HPQ   V+E L RLRSS  AS+SS+   L+ LQDLHDS+EK+++
Sbjct:     1 MAVSFHVRSSSYPSRQHPQAAHVDEQLTRLRSSGTASSSSICQRLSNLQDLHDSLEKMIR 60

Query:    61 LPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDET 120
             L +  QAL++      +++LL+GS KILD+CS +++ L QMKES   +QS++RR+RGD  
Sbjct:    61 LSVTNQALSQDQ----IEKLLDGSIKILDLCSISKDGLSQMKESLKEIQSIVRRKRGD-- 114

Query:   121 ELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSINEEHVSVLKEVEAVTLATFEYL 180
              L++E+KKYLASRK ++K+  K L +LK  +N+       + ++V  E E VT+A FE L
Sbjct:   115 -LSAEVKKYLASRKFLKKSFEKVLKSLKTSQNK------NDALAVFGEAETVTIALFESL 167

Query:   181 LSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFE 221
              SF+SGS+   K S   LV+K++   +  C+ +  E    +
Sbjct:   168 FSFMSGSKACGKWS---LVSKMMSQSKGTCEAEANEFTRVD 205

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127928 AT4G35690 "AT4G35690" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 84/296 (28%), Positives = 156/296 (52%)

Query:     1 MAASYHTRSNSFPTRSHPQILEVEEHLRRLRS--SQAASTSSLGHELNGLQDLHDSVEKI 58
             M      RS S P+ SHP    +EE L ++++  +   S+ S+   L GL++L++  E  
Sbjct:     4 MLVKNQLRSISLPSSSHPSTTGIEESLNKVKTINTMTGSSESVLMGLEGLEELYNCTEDF 63

Query:    59 LQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRR-- 116
             L++   Q+ ++     ++++E+L+GS +++D+CS +++ +++ +E   G+QS +RR++  
Sbjct:    64 LKMGSTQRVMSSSDGSEFMEEMLDGSLRLMDICSVSRDLMVETQEHVRGVQSCVRRKKVV 123

Query:   117 GDETELTSEIKKYLASRKAMRKAINKTLGNLKGVEN--ECSPSIN----EEH----VSVL 166
             G E +L   +  Y+  RK MRK   + LG+LK ++     S S+N    EEH    V  +
Sbjct:   124 GGEDQLDVAVAGYVGFRKNMRKEAKRLLGSLKNIDGGLSSSSSVNNGEQEEHLVVVVDAM 183

Query:   167 KEVEAVTLATFEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNEFEKVDAA 226
             ++V +V++A     L F+SG R  +  S+ A V K    K+     ++T+ NE E +D  
Sbjct:   184 RQVVSVSVAVLRSFLEFLSGRRQSNIKSKLASVLK----KKKVHHVEETK-NELENLDLE 238

Query:   227 LSTVVGHKTIKSDNIIYMQNQLKEMESSIQDXXXXXXXXXXXXIKARVPLLNILTN 282
             +         ++D    +Q +L+E+E SI              I+ R  LLNI+++
Sbjct:   239 IFCS------RND----LQKKLEEVEMSIDGFEKKLEGLFRRLIRTRASLLNIISH 284

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2081800 AT3G51400 "AT3G51400" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 92/287 (32%), Positives = 144/287 (50%)

Query:     1 MAASYHTRSNSFPTRSHPQIL-EVEEHLRRLRSSQAASTSSLGHELNGLQDLHDSVEKIL 59
             MAASYH RS+S P R HP  L ++++ L +LR+          + L+ L +L+DSV  + 
Sbjct:     1 MAASYHVRSSSLPARLHPHGLNQIQQLLNKLRADD-------NNSLSLLSNLYDSVSHLF 53

Query:    60 QLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRR--G 117
                     L   H   +   LL+ S   LD+CS  ++   ++K+    L+S  RRRR  G
Sbjct:    54 N-DSPSSLLVPHHS--FFTHLLDLSLLHLDLCSKLRDITCRIKDCLRDLRSAFRRRRHSG 110

Query:   118 DETELTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSINEEHVSVLKEVEAVTLATF 177
             D T +   +K ++ SRKA+ K I K L  LK      S S +   +++L++V + T  TF
Sbjct:   111 DST-IRCHVKAFIRSRKAVHKDIAKLLLLLKQTGLSSSES-SHPLITLLQQVCSQTCQTF 168

Query:   178 EYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEM---NEFEKVDAALSTVVGHK 234
               +L  +S +    + S++ALVTKL+  K +     Q      NEF+ +D  L      +
Sbjct:   169 RTVLLSLSTAVPKPRPSKWALVTKLVI-KNVTSTSGQVRTGHRNEFQMMDEELRRFSMAE 227

Query:   235 TIKSDNIIYMQNQLKEMESSIQDXXXXXXXXXXXXIKARVPLLNILT 281
              IK D I  M   L +++ +++D            I+ARV LLNIL+
Sbjct:   228 EIKKDRIKSMITNLDKVDVAVEDLEESLERLYRRMIQARVSLLNILS 274

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2827911 AT2G17680 "AT2G17680" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 87/305 (28%), Positives = 153/305 (50%)

Query:     1 MAASYHTRSNSFPTRSHPQILEVEEHLRR----LRSSQAASTSSLGHELNGLQDLHDSVE 56
             M    H RS S  +RSHP    +EE L +    + +S  AS+ S+   L+GL+DL+D  E
Sbjct:     4 MMIKNHVRSISLQSRSHPSTAAIEESLDKFLITMNTSTMASSESVHSGLSGLEDLYDCSE 63

Query:    57 KILQLPLVQQALARGHQKK---------WVDELLNGSFKILDVCSTAQNALLQMKESALG 107
              +L++   Q+ L+   +KK         +++E+L+GS +++D+C+ +++ +++  E  LG
Sbjct:    64 DLLKMGSTQRVLSFSDEKKKKKRKVKGEFMEEMLDGSLRLMDICNVSRDLMVETHEHVLG 123

Query:   108 LQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLGNLKGVE------NECSPSINEE 161
             LQS +RRR+        ++  Y+  RK MRK + K LG+LK +       +       + 
Sbjct:   124 LQSCVRRRKD------VDVSGYVGFRKNMRKEVKKLLGSLKNINVGLVMRDHGYDQDGDI 177

Query:   162 H----VSVLKEVEAVTLATFEYLLSFISGSRTPSKL-SRFALVTKLIRPKRIACQEDQTE 216
             H    +  ++ V  +T++  +    F+SG +  + + S+ ALV  L+  K      D+  
Sbjct:   178 HFLAVIHAMRRVVYMTVSVLKSFFEFLSGRQNGNDVRSKLALV--LMNKK--FHDHDKMV 233

Query:   217 MNEFEKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESSIQDXXXXXXXXXXXXIKARVPL 276
              NE E VD+A   + G  +I  D++     +L+E+E  I              IK R  L
Sbjct:   234 KNELENVDSA---ICGD-SISHDDL---HEKLEEVEVWIGKFEKSLEGLFRGLIKTRASL 286

Query:   277 LNILT 281
             LNI++
Sbjct:   287 LNIIS 291

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127958 AT4G35710 "AT4G35710" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 79/287 (27%), Positives = 146/287 (50%)

Query:     8 RSNSFPTRSHPQILEVEEHLRRLRS--SQAASTSSLGHELNGLQDLHDSVEKILQLPLVQ 65
             RS S P+RS P    +EE L ++++  +   S+ S+   L GL++L+  +E+ L++   Q
Sbjct:    11 RSISLPSRSQPSTSGLEESLNKIKTINTTTGSSESILMGLAGLEELYIFLEEFLKMGSKQ 70

Query:    66 QALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRR----GDETE 121
             + ++ G  + +++E+L+GS +++D+CS +++ +++  E   G+QS +RR++    G   +
Sbjct:    71 RVMSSGGSE-FMEEMLDGSLRLMDICSVSRDLMVETHEHVRGVQSYVRRKKVSGGGGGDK 129

Query:   122 LTSEIKKYLASRKAMRKAINKTLGNLKGVEN---ECSPSINEEH-VSVLKEVEAVTLATF 177
             +   +  Y+  RK MRK   K LG+LK V+     C     +E  V+V+  V  V   + 
Sbjct:   130 IDVAVSDYVGFRKNMRKEAKKLLGSLKKVDGGTRSCDNDHEDEQLVAVIDRVRRVVSVSV 189

Query:   178 EYLLSFISG-SRTPSKL-SRFALVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKT 235
               L SF+   SR  S + S+ A V K+ +      +      N  E +D+A   + G   
Sbjct:   190 VVLKSFLELLSRRKSNIKSKLASVLKMKKDNHAPAK------NVLETLDSA---IFGDFL 240

Query:   236 IKSDNIIYMQNQLKEMESSIQDXXXXXXXXXXXXIKARVPLLNILTN 282
                D    +QN+L+E+E  I              I+ R  +LNI+++
Sbjct:   241 SHDD----LQNELEEVEMCIGGFERNLEGLFRRLIRTRASILNIISH 283

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2128033 AT4G35680 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 85/294 (28%), Positives = 140/294 (47%)

Query:     8 RSNSFPTRSHPQILEVEEHLRRL----RSSQAASTS-SLGHE-----LNGLQDLHDSVEK 57
             RS S P+R HP  +++   L RL    RSS + S S S G+E     L  L +L+  V +
Sbjct:    19 RSASLPSRIHPLSVKLRTALSRLSIWRRSSSSISVSASFGYETVLVGLVNLTELYGCVHE 78

Query:    58 ILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRG 117
             +L+ P V+  L    + K +DE L+GS  +LDV    +  ++ M+E    L+S LRR+ G
Sbjct:    79 LLESPYVKHTLLHHQEGKLLDESLDGSVLLLDVYEGTREVIVAMREHVTNLKSALRRK-G 137

Query:   118 DETELTSEIKKYLASRKAMRKAINKTLGNLKGVEN-ECSPSINEEHV----SVLKEVEAV 172
                 L  E K Y   RK  +K I+K +  LK +E  + S + +++      SVL+E   +
Sbjct:   138 S---LEKEAKAYFNLRKKAKKEISKQINALKKMETRDISTNTDQDSAIASTSVLRETIQI 194

Query:   173 TLATFEYLLSFISGSRTPSKLSRFALVTKLIR-PKRIACQEDQTEM--NEFEKVDAA-LS 228
             T++ F +LL F+S    P   + F     L+  P       D++ +   E + +D   L 
Sbjct:   195 TVSMFRHLLLFLSTIPPPPSPAIFKTTIGLLSIPFVSPSLSDKSLILIKEMKSLDDVFLG 254

Query:   229 TVV-GHKTIKSDNIIYMQNQLKEM-ESSIQDXXXXXXXXXXXXIKARVPLLNIL 280
             +++   KT+     +  +   +++ E   +D            +K RV  LNIL
Sbjct:   255 SILDSRKTLFEVETMENEKMRRDVVEDGFRDLEAELDSVSKCLVKNRVLFLNIL 308

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2128008 AT4G35660 "AT4G35660" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 79/270 (29%), Positives = 135/270 (50%)

Query:     8 RSNSFPTRS-HPQILEVEEHLRRLR----SSQAASTSSLGHELNGLQDLHDSV-EKILQL 61
             RS S PTR  HP+   VEE L++++    SS A+S   LG  L  L +L+D V E+++  
Sbjct:    17 RSISLPTRLIHPKAQRVEEELKKIQALNSSSSASSRIQLG--LAKLVELYDFVNEQVISS 74

Query:    62 PLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETE 121
             P  QQAL     +K V++ L+ S  +LDV    ++ +  + E    LQS LRRRRG+ + 
Sbjct:    75 PQGQQALRLCRNRKLVEDALDESIVLLDVSDFTRDLIGTLMEHIQELQSALRRRRGNLSS 134

Query:   122 LTSEIKKYLASRKAMRKAINKTLGNLKGVENECSPSIN------EEHVS----VLKEVEA 171
             + SEI+ Y++  K  +    + + +L   + +    +       +EH S    +L++  A
Sbjct:   135 VQSEIRSYISFHKKSKTEAARQVKSLARRQTKKKAWVIKQSGGLDEHSSMVSNILRQSNA 194

Query:   172 VTLATFEYLLSFIS--GSRTPSKLSRFALV-TKLIRP--KRIACQEDQTEMNEFEKVDAA 226
              T++  + LL F+S  G     K      V   +IR    RI  ++   E++  + +   
Sbjct:   195 STISILQSLLQFLSTSGENNEKKNGEIGCVDNSMIRSFFGRIIGRKMVKEIDA-QTILGR 253

Query:   227 LSTV-VGHKTIKSDNIIYMQNQLKEMESSI 255
             L+ V V  + IK D + Y+  +L +  +S+
Sbjct:   254 LAMVNVSLEAIK-DELSYLSRRLIQHRASL 282

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036216001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (297 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
pfam03087	230	pfam03087, DUF241, Arabidopsis protein of unknown	9e-46

>gnl|CDD|217360 pfam03087, DUF241, Arabidopsis protein of unknown function

 Score =  153 bits (388), Expect = 9e-46
 Identities = 83/240 (34%), Positives = 149/240 (62%), Gaps = 17/240 (7%)

Query: 45  LNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKES 104
           L+GL++L+D VE++L+    QQ L+   Q K+ +ELL+GS ++LD+CS +++ ++++KE 
Sbjct: 3   LSGLKELYDCVEELLRSSPTQQQLSS-LQSKFFEELLDGSLRLLDICSVSRDLIVEIKEH 61

Query: 105 ALGLQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLGNLKGVE-NECSPSINEEH- 162
              LQS LRR+R  + E   E+K Y+ SRK ++K I K L +LK ++    + + ++E  
Sbjct: 62  VRELQSALRRKRSGDLE--VEVKAYVRSRKKLKKEIAKLLNSLKKMDTKVWNNNGDQEDA 119

Query: 163 ---VSVLKEVEAVTLATFEYLLSFISGSRTPSKLSRFALVTKLIRPKRIACQEDQTEMNE 219
              + VL+E  +VT++ F  +L F+S ++T S   + +L+++  + K+   Q   +  +E
Sbjct: 120 SAVLDVLEETVSVTVSVFRSVLLFLSTTKT-SFDIKSSLLSEK-KSKKGGSQSSLSIRSE 177

Query: 220 FEKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNI 279
             ++D         K   ++ +  +  +L+E+E+SI++LE+ LESL RRLI+ RV LLNI
Sbjct: 178 LSRLDEE-------KRRDNEEVKDILKRLEELENSIEELEDELESLFRRLIQTRVSLLNI 230

This family represents a number of Arabidopsis proteins. Their functions are unknown. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PF03087	231	DUF241: Arabidopsis protein of unknown function; I	100.0
PF05633	389	DUF793: Protein of unknown function (DUF793); Inte	99.9
PF05055	336	DUF677: Protein of unknown function (DUF677); Inte	94.49

>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function

Probab=100.00  E-value=4.2e-68  Score=479.39  Aligned_cols=226  Identities=48%  Similarity=0.754  Sum_probs=209.1

Q ss_pred             HHHHhhHHHHHhHHHHHcCchhHHHHhhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhcCCCchhH
Q 047750           43 HELNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETEL  122 (282)
Q Consensus        43 ~~L~~L~~l~~~v~~Ll~lP~~Q~aL~~~~~~k~vde~LD~Sl~LLDvC~~~~d~l~~lke~v~eLqsaLRRr~g~~~~~  122 (282)
                      +||++|.|||+|++|||++|++||+|+|++ +||||++|||||+|||+||+|||+|++||||++|||++|||||+|+  +
T Consensus         1 dgL~~L~~Ly~~~~ell~lp~tq~al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~~~~--~   77 (231)
T PF03087_consen    1 DGLSGLKDLYECLEELLQLPSTQQALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRDDGS--I   77 (231)
T ss_pred             CchhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh--H
Confidence            599999999999999999999999999999 9999999999999999999999999999999999999999998544  8


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC-CCCchh----HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCchh
Q 047750          123 TSEIKKYLASRKAMRKAINKTLGNLKGVENECS-PSINEE----HVSVLKEVEAVTLATFEYLLSFISGSRTPSKLSRFA  197 (282)
Q Consensus       123 ~~~v~~y~~~rkk~kK~i~K~l~~LK~~~~~~~-~~~~~d----~v~~l~ev~~itisv~~sll~~~s~~~~~~~~s~Ws  197 (282)
                      +++|++|+++|||++|+|.|++++||.++++.. +..+.+    .+++++||+++|+++|+++++|+|+|..++++++|+
T Consensus        78 ~~~i~sy~~~rKk~kK~i~K~~~~lk~~~~~~~~~~~~~~~~~~vv~~l~ea~~~t~si~~sll~~ls~~~~~~~~~~ws  157 (231)
T PF03087_consen   78 ESEIASYIRSRKKAKKEIAKLLRSLKRMSNKSSSSNDDDEHLSAVVRVLREAREITVSIFESLLSFLSSPSKKSKSSKWS  157 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccchh
Confidence            999999999999999999999999999999842 222222    499999999999999999999999999999999999


Q ss_pred             HHHHhhccCcccccchhhhhhhhHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHhh
Q 047750          198 LVTKLIRPKRIACQEDQTEMNEFEKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESSIQDLEEGLESLSRRLIKARVPLL  277 (282)
Q Consensus       198 ~vskl~~~~~v~~~~~~~~~nEle~vDaal~~l~~~~~~~~e~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~tRVsLL  277 (282)
                      +|+++++++. .|...+...||++++|+++..       +.+++++++++||+||.||++||+|+|+|||+|||||||||
T Consensus       158 lvsk~~~~~~-~~~~~~~~~~e~~~~d~~~~~-------~~e~~~~~~~~Le~LE~~Ie~lE~glE~vFR~LIktRVSLL  229 (231)
T PF03087_consen  158 LVSKLMQKKR-SCDSSEENRNEFEKVDAALKS-------DEEEVQNAQKRLEELEECIEELEEGLECVFRRLIKTRVSLL  229 (231)
T ss_pred             HHHHHHhccc-ccchhHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999885 566666689999999999852       57889999999999999999999999999999999999999


Q ss_pred             hh
Q 047750          278 NI  279 (282)
Q Consensus       278 Ni  279 (282)
                      ||
T Consensus       230 NI  231 (231)
T PF03087_consen  230 NI  231 (231)
T ss_pred             cC
Confidence            98

>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development

Probab=99.90  E-value=6e-22  Score=189.28  Aligned_cols=254  Identities=18%  Similarity=0.274  Sum_probs=187.2

Q ss_pred             CChHhHHHHHH-hHhhc-c--c--C---ChhhHHHHHHhhHHHHHhHHHHHcCchhHH-HHhhhhhhhHHHHhhhhhHHH
Q 047750           18 PQILEVEEHLR-RLRSS-Q--A--A---STSSLGHELNGLQDLHDSVEKILQLPLVQQ-ALARGHQKKWVDELLNGSFKI   87 (282)
Q Consensus        18 P~~~~~e~~L~-~Lr~~-~--~--~---ss~s~~~~L~~L~~l~~~v~~Ll~lP~~Q~-aL~~~~~~k~vde~LD~Sl~L   87 (282)
                      |.+..||.++. +|... .  .  +   |.+||...|..+...|+.+..||  |..+. .++..+.+|||++|||++|++
T Consensus        37 ~~L~~Fq~~va~rl~~L~~~~~~~~~~LSL~W~~~~ld~~l~~~~efr~li--~~~~~~~~s~~~~dk~v~eylD~sVKl  114 (389)
T PF05633_consen   37 AELEAFQRHVAERLSDLSPSSKDSDDFLSLSWMRKALDSFLCCHEEFRALI--TNLRDLPLSKPPDDKWVDEYLDRSVKL  114 (389)
T ss_pred             hhHHHHHHHHHHHHHHhccCcCcccccccHHHHHHHHHHHHHHHHHHHHHH--hcccccccCCchHHHHHHHHHHHHHHH
Confidence            35778888887 67766 2  1  1   48999999999999999999998  33322 455668899999999999999


Q ss_pred             HHHhhHHHHHHHHhHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhccc----------cC---
Q 047750           88 LDVCSTAQNALLQMKESALGLQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLGNLKGVEN----------EC---  154 (282)
Q Consensus        88 LDvC~~~~d~l~~lke~v~eLqsaLRRr~g~~~~~~~~v~~y~~~rkk~kK~i~K~l~~LK~~~~----------~~---  154 (282)
                      |||||+++|.|.++++...-+|.|++-.+..++.   .-..|.|+||.    +..+...++.-..          +.   
T Consensus       115 LDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~~~---~~~~~rRAr~a----L~dl~~~~~~~~~~~~~~~~~rnrs~~r  187 (389)
T PF05633_consen  115 LDVCNAIRDGISQLRQWQLLLQIALHALDSSRPL---GEGQLRRARKA----LSDLKIAMLDDKDSGSSGGSHRNRSFGR  187 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHH----HHHHHHHHhcccccCccccccccccccc
Confidence            9999999999999999999999999998754221   12346566554    5555433322110          00   


Q ss_pred             ---C---CCC--------c------------------------------------hhHHHHHHHHHHHHHHHHHHHHHhh
Q 047750          155 ---S---PSI--------N------------------------------------EEHVSVLKEVEAVTLATFEYLLSFI  184 (282)
Q Consensus       155 ---~---~~~--------~------------------------------------~d~v~~l~ev~~itisv~~sll~~~  184 (282)
                         +   .+.        .                                    ...++.+|.+..+|++|+-.+...+
T Consensus       188 ~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m~~nL~~Pk~~esak~~gL~~A~Y~m~~vtvFV~~vlVAA~  267 (389)
T PF05633_consen  188 SNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAMGENLVLPKGKESAKGRGLLRAMYGMKSVTVFVCWVLVAAF  267 (389)
T ss_pred             ccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHHHhcCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHee
Confidence               0   000        0                                    0127789999999999988888766


Q ss_pred             hcC-C------C-CCCCCchhHHHHhhccCcc------cccchhhhhhhhHHHHHHHhhhhcc--C---CCCc-------
Q 047750          185 SGS-R------T-PSKLSRFALVTKLIRPKRI------ACQEDQTEMNEFEKVDAALSTVVGH--K---TIKS-------  238 (282)
Q Consensus       185 s~~-~------~-~~~~s~Ws~vskl~~~~~v------~~~~~~~~~nEle~vDaal~~l~~~--~---~~~~-------  238 (282)
                      +.+ +      . .|+...|+.-...+|.+..      ...+....++|++.||++.+.|+.-  .   ....       
T Consensus       268 pc~~rgL~~~l~~vP~~~~WA~s~~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr~L~el~d~~~~p~~~e~~~ev~  347 (389)
T PF05633_consen  268 PCQDRGLQVHLSAVPRQFSWAPSFISLQERINEEIKKKERKGSCGLLKELQQVEASVRELHELIDSFQFPLEEEKEEEVR  347 (389)
T ss_pred             ecCCccccCCCCCCccccccchHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHH
Confidence            653 2      2 4678899988888886531      1111235689999999999888752  1   1111       


Q ss_pred             hhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhhhHHhhhhc
Q 047750          239 DNIIYMQNQLKEMESSIQDLEEGLESLSRRLIKARVPLLNIL  280 (282)
Q Consensus       239 e~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~tRVsLLNil  280 (282)
                      +.|+++.+..+.|++++++||.+++.||+++|.+|..+|+.|
T Consensus       348 ~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l  389 (389)
T PF05633_consen  348 EAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL  389 (389)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence            337999999999999999999999999999999999999875

Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].

>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants

Probab=94.49  E-value=4.8  Score=38.73  Aligned_cols=42  Identities=14%  Similarity=0.391  Sum_probs=39.4

Q ss_pred             hHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhcC
Q 047750           75 KWVDELLNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRR  116 (282)
Q Consensus        75 k~vde~LD~Sl~LLDvC~~~~d~l~~lke~v~eLqsaLRRr~  116 (282)
                      ..|++|.|.|..=+|+|++....+-+.+.+.+-++.+|.+-+
T Consensus        66 ~Lv~~YFd~S~~a~~~C~~L~k~I~~aR~~~~~I~~al~~~~  107 (336)
T PF05055_consen   66 RLVSDYFDSSLEASDFCEALLKCIHRARDNYLPIRRALKQFE  107 (336)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence            489999999999999999999999999999999999998854

This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 59/366 (16%), Positives = 105/366 (28%), Gaps = 128/366 (34%)

Query: 4   SYHTR----SNSFP----TRSHPQILEVEEHLRRLRSSQ---------------AASTS- 39
               R    +  F     +R  P  L++ + L  LR ++               A     
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 40  ---------------SLGHE------LNGLQDLHDSVEKILQ--------LPL----VQQ 66
                          +L +       L  LQ L   ++            + L    +Q 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 67  ALAR-----GHQK----------KWVDELLNGSFKIL---------DVCSTAQNALLQMK 102
            L R      ++                  N S KIL         D  S A    + + 
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 103 ESALGL-----QSVLRRRRG-DETELTSEIKK----YLASRKAMRKAINKTLGNLKGVEN 152
             ++ L     +S+L +       +L  E+       L+      +    T  N K V  
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 153 ECSPSINEEHVSVLKEVEAVTLATFEYLLSFISGSRTPSK-LSRFALVTKLIRPKRIACQ 211
           +   +I E  ++VL+  E      F+ L  F   +  P+  LS   +   +I+       
Sbjct: 353 DKLTTIIESSLNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSL--IWFDVIK------S 402

Query: 212 EDQTEMNEFEKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESSIQDL-------EEGLES 264
           +    +N+  K               S     ++ Q KE   SI  +        E   +
Sbjct: 403 DVMVVVNKLHK--------------YSL----VEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 265 LSRRLI 270
           L R ++
Sbjct: 445 LHRSIV 450

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00