Citrus Sinensis ID: 047751

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580

MRIFLTLFVIVSLLLCFASTESVTELDSEINATATATATATTTELNNTGSKEDSFADMIDRALEKEFNESEQNEAADPGSFNNSVAGQQAVLETVARVKNKKNETKEEKSFQFHDVFNLDNENGAEDTPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLRWFSPDSPIEIGYKGDSLRADSAKRITVMVQGSHHDS

cHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEcccccc

cHHHHHHHHHHHHHHHHcccccHHHHccccccEEEEcccccEEcccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHEHHHHEEEcccccccccccccccHHHccccccccccccccEEcccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEHHHEEEEccccccHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEccccEEEEEEEEcccccc

MRIFLTLFVIVSLLLCFASTESVTELDSEINATATATATATTtelnntgskedsFADMIDRALEKefneseqneaadpgsfnnsvaGQQAVLETVARVKNkknetkeeksfqfhdvfnldnengaedtptlidrkdnvfiisnpkskypvlqlDLRLISDLVVVIVSATCGgiafacagqpviTGYLlagsvigpggfSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIaslcggkpsegVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPvlggssgvLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLrwfspdspieigykgdslradSAKRITVMVQGSHHDS

MRIFLTLFVIVSLLLCFASTESVTELDSEINATATAtatatttelnntgskedSFADMIDRALEKEFNESEQNEAADPGSFNNSVAGQQAVLETVARVKNKknetkeeksfqfhdvfnldnengaedtptlidrkdnVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLRWFSPDSPIEIGYKGDSLRADSAKRITVMVQGSHHDS

MRIFLTLFVIVSLLLCFASTESVTELDSEINatatatatatttELNNTGSKEDSFADMIDRALEKEFNESEQNEAADPGSFNNSVAGQQAVLETVARVknkknetkeekSFQFHDVFNLDNENGAEDTPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFAllpvlggssgvlqgvisMTKSlvtlitflailtilSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDillaavllvivvktvvvatvikGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNlhlvegklyllllgttalslvttPLLFKLIPAVVNLGVLLRWFSPDSPIEIGYKGDSLRADSAKRITVMVQGSHHDS

**IFLTLFVIVSLLLCFASTESVTEL**************************************************************************************FHDVFNL**********TLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLRWFSPDSPIEIGYKG**********************

*RIFLTLFVIVSLLLCFASTESVTELDSEIN*************************DMIDRAL*************************QAVLE***********************************PTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLM**********QVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLL***********************KRITVMVQGSH***

MRIFLTLFVIVSLLLCFASTESVTELDSEINATATATATATTTELNNTGSKEDSFADMIDRALEKE************GSFNNSVAGQQAVLETVARVKNKKNETKEEKSFQFHDVFNLDNENGAEDTPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLRWFSPDSPIEIGYKGDSLRADSAKRITV*********

MRIFLTLFVIVSLLLCFASTESVTELDSEINATATATATATTTEL*******DSFADMIDRALEKEFNE**********SFNNSVAGQQAVLETVARVKNK********SFQFHDVFNLDN*NGAEDTPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLRWFSPDSPIEIGYKGDSLRADSAKRITVMVQG*****

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SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		580	2.2.26 [Sep-21-2011]
Q9ZUN3		592	K(+) efflux antiporter 4	yes	no	0.95	0.930	0.839	0.0
B5X0N6		597	K(+) efflux antiporter 6	no	no	0.908	0.882	0.817	0.0
Q8VYR9		568	K(+) efflux antiporter 5	no	no	0.867	0.885	0.709	0.0
Q8BH01		678	Transmembrane and coiled-	yes	no	0.818	0.700	0.301	5e-47
Q6UWJ1		677	Transmembrane and coiled-	yes	no	0.812	0.695	0.303	7e-47
P39830		558	Inner membrane protein Yb	N/A	no	0.601	0.625	0.333	3e-40
B4SUV7		601	Glutathione-regulated pot	no	no	0.570	0.550	0.317	4e-36
B5BH03		601	Glutathione-regulated pot	no	no	0.570	0.550	0.317	5e-36
Q5PL21		601	Glutathione-regulated pot	no	no	0.570	0.550	0.317	5e-36
Q8ZLL3		601	Glutathione-regulated pot	no	no	0.570	0.550	0.317	5e-36

>sp\|Q9ZUN3\|KEA4_ARATH K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2	Back alignment and function desciption

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/560 (83%), Positives = 502/560 (89%), Gaps = 9/560 (1%)

Query: 25  ELDSEINATATATATATTTELNNTGSK--EDSFADMIDRALEKEFNESEQNEAADPGSFN 82
           E D+E ++  T     T  E N T +K  EDSFADMIDRALEKEF +++QNE  DPGSFN
Sbjct: 38  ESDNETDSVVTREINGTVVESNATSAKPREDSFADMIDRALEKEFPDNDQNEVPDPGSFN 97

Query: 83  NSVAGQQAVLETVARVKNKKNE--TKEEKSFQFHDVFNLDNENGAEDTPTLIDRKDNVFI 140
           NSVA QQAVLETVARVK KKNE  TKEEKSF     FNLDNENG EDTP LIDRKDNVFI
Sbjct: 98  NSVADQQAVLETVARVKPKKNETKTKEEKSF-----FNLDNENGVEDTPRLIDRKDNVFI 152

Query: 141 ISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSF 200
           +SNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGS+IGPGG SF
Sbjct: 153 MSNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGLSF 212

Query: 201 VSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLC 260
           VSEMVQVETVAQFGVIFLLFALGLEFS AKLRVVRAVAI GGLLQIFLFMCL GI ASLC
Sbjct: 213 VSEMVQVETVAQFGVIFLLFALGLEFSAAKLRVVRAVAIPGGLLQIFLFMCLSGITASLC 272

Query: 261 GGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPV 320
           GGK +EG+FVG  LSMSSTAVVLKFLMERNSISALHGQ+T+GTLILQDCAVGLLFALLPV
Sbjct: 273 GGKLTEGIFVGAFLSMSSTAVVLKFLMERNSISALHGQITVGTLILQDCAVGLLFALLPV 332

Query: 321 LGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVA 380
           LGG+SGVLQGV+SM KSL  LI FL  L +LSRT VPW LKLM SLSSQTNELYQLA+VA
Sbjct: 333 LGGTSGVLQGVLSMAKSLAILIAFLGALFVLSRTWVPWFLKLMTSLSSQTNELYQLAAVA 392

Query: 381 FCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIH 440
           FCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIH
Sbjct: 393 FCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIH 452

Query: 441 VHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSR 500
           +HFLWNHVDILLAAVLLVIV+KTVVVA V+K F Y+NKT++LVGMSLAQIGEFAFVLLSR
Sbjct: 453 MHFLWNHVDILLAAVLLVIVIKTVVVAIVVKVFGYNNKTAVLVGMSLAQIGEFAFVLLSR 512

Query: 501 ASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLRWFSPDSPIEIGYKGDS 560
           ASNLHL+E KLYLLLLGTTALSLVTTPLLFKLIPAVV+LGVLLRWFSPDS  EIG+KG+ 
Sbjct: 513 ASNLHLIESKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGVLLRWFSPDSSTEIGFKGEL 572

Query: 561 LRADSAKRITVMVQGSHHDS 580
             ++SAKRI++M+QGS HDS
Sbjct: 573 YHSESAKRISLMIQGSLHDS 592

May operate as a K(+)/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|B5X0N6\|KEA6_ARATH K(+) efflux antiporter 6 OS=Arabidopsis thaliana GN=KEA6 PE=2 SV=1	Back alignment and function description

>sp\|Q8VYR9\|KEA5_ARATH K(+) efflux antiporter 5 OS=Arabidopsis thaliana GN=KEA5 PE=2 SV=1	Back alignment and function description

>sp\|Q8BH01\|TMCO3_MOUSE Transmembrane and coiled-coil domain-containing protein 3 OS=Mus musculus GN=Tmco3 PE=2 SV=1	Back alignment and function description

>sp\|Q6UWJ1\|TMCO3_HUMAN Transmembrane and coiled-coil domain-containing protein 3 OS=Homo sapiens GN=TMCO3 PE=2 SV=1	Back alignment and function description

>sp\|P39830\|YBAL_ECOLI Inner membrane protein YbaL OS=Escherichia coli (strain K12) GN=ybaL PE=1 SV=2	Back alignment and function description

>sp\|B4SUV7\|KEFB_SALNS Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella newport (strain SL254) GN=kefB PE=3 SV=1	Back alignment and function description

>sp\|B5BH03\|KEFB_SALPK Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella paratyphi A (strain AKU_12601) GN=kefB PE=3 SV=1	Back alignment and function description

>sp\|Q5PL21\|KEFB_SALPA Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=kefB PE=3 SV=1	Back alignment and function description

>sp\|Q8ZLL3\|KEFB_SALTY Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=kefB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		580
225444959		576	PREDICTED: K(+) efflux antiporter 4-like	0.977	0.984	0.874	0.0
297738684		522	unnamed protein product [Vitis vinifera]	0.896	0.996	0.923	0.0
356523691		586	PREDICTED: K(+) efflux antiporter 4-like	0.941	0.931	0.862	0.0
255546171		569	Inner membrane protein ybaL, putative [R	0.946	0.964	0.867	0.0
356511411		586	PREDICTED: K(+) efflux antiporter 4-like	0.924	0.914	0.879	0.0
449435844		587	PREDICTED: K(+) efflux antiporter 4-like	0.934	0.923	0.856	0.0
357520697		604	Transmembrane and coiled-coil domain-con	0.975	0.937	0.795	0.0
297836296		591	ATKEA4 [Arabidopsis lyrata subsp. lyrata	0.984	0.966	0.823	0.0
356562191		662	PREDICTED: K(+) efflux antiporter 6-like	0.944	0.827	0.806	0.0
30680729		592	K(+) efflux antiporter 4 [Arabidopsis th	0.95	0.930	0.839	0.0

>gi\|225444959\|ref\|XP_002282458.1\| PREDICTED: K(+) efflux antiporter 4-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/573 (87%), Positives = 531/573 (92%), Gaps = 6/573 (1%)

Query: 6   TLFVIVSLLLCFASTESVTELDSEINATATATATATTTELNNTGSK-EDSFADMIDRALE 64
           +LFV   +LLC AS  S +  +S +     ATA     E N + S+ +DSFADMIDRALE
Sbjct: 7   SLFVFFVVLLCLASRPSHSHTESSLLEDTNATA-----ESNASRSRSQDSFADMIDRALE 61

Query: 65  KEFNESEQNEAADPGSFNNSVAGQQAVLETVARVKNKKNETKEEKSFQFHDVFNLDNENG 124
           KEF E+EQ  A+D GSFNNSVA QQAVLETVARV+ KKN+TKEEKSFQ H+VFNLDNEN 
Sbjct: 62  KEFTENEQTGASDAGSFNNSVAEQQAVLETVARVRPKKNDTKEEKSFQLHNVFNLDNENR 121

Query: 125 AEDTPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVIT 184
            EDTPTLIDRKDNVFI+SNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVIT
Sbjct: 122 QEDTPTLIDRKDNVFIMSNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVIT 181

Query: 185 GYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLL 244
           GYLLAGSVIGPGG SFVSEMVQVETVAQFGVIFLLFALGLEFST KLRVVRAVA+LGGLL
Sbjct: 182 GYLLAGSVIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLL 241

Query: 245 QIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTL 304
           QIFLFMCLCGI ASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVT+GTL
Sbjct: 242 QIFLFMCLCGITASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTVGTL 301

Query: 305 ILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMI 364
           ILQDCAVGLLFALLPVLGG+SG+LQGVISMTKSLV LITFLAIL+ILSRTCVPW LKLM+
Sbjct: 302 ILQDCAVGLLFALLPVLGGTSGILQGVISMTKSLVVLITFLAILSILSRTCVPWFLKLMV 361

Query: 365 SLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIR 424
           SLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIR
Sbjct: 362 SLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIR 421

Query: 425 NFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVG 484
           NFFAALFLASIGMLIHVHFLWNHVDILLAAV+LVI++KT+VV+TV+KGF Y+NKTSLLVG
Sbjct: 422 NFFAALFLASIGMLIHVHFLWNHVDILLAAVILVIIIKTIVVSTVVKGFGYNNKTSLLVG 481

Query: 485 MSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLR 544
           MSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVV+LGVLLR
Sbjct: 482 MSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGVLLR 541

Query: 545 WFSPDSPIEIGYKGDSLRADSAKRITVMVQGSH 577
           WFSPD P EIG+KGDS RADSAKRIT+MVQGSH
Sbjct: 542 WFSPDVPSEIGFKGDSFRADSAKRITLMVQGSH 574

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297738684\|emb\|CBI27929.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356523691\|ref\|XP_003530469.1\| PREDICTED: K(+) efflux antiporter 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|255546171\|ref\|XP_002514145.1\| Inner membrane protein ybaL, putative [Ricinus communis] gi\|223546601\|gb\|EEF48099.1\| Inner membrane protein ybaL, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356511411\|ref\|XP_003524420.1\| PREDICTED: K(+) efflux antiporter 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|449435844\|ref\|XP_004135704.1\| PREDICTED: K(+) efflux antiporter 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357520697\|ref\|XP_003630637.1\| Transmembrane and coiled-coil domain-containing protein [Medicago truncatula] gi\|355524659\|gb\|AET05113.1\| Transmembrane and coiled-coil domain-containing protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297836296\|ref\|XP_002886030.1\| ATKEA4 [Arabidopsis lyrata subsp. lyrata] gi\|297331870\|gb\|EFH62289.1\| ATKEA4 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356562191\|ref\|XP_003549355.1\| PREDICTED: K(+) efflux antiporter 6-like [Glycine max]	Back alignment and taxonomy information

>gi\|30680729\|ref\|NP_849990.1\| K(+) efflux antiporter 4 [Arabidopsis thaliana] gi\|298351842\|sp\|Q9ZUN3.2\|KEA4_ARATH RecName: Full=K(+) efflux antiporter 4; Short=AtKEA4 gi\|330251805\|gb\|AEC06899.1\| K(+) efflux antiporter 4 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		580
TAIR\|locus:2050382		592	KEA4 "K+ efflux antiporter 4"	0.991	0.971	0.692	3.4e-196
TAIR\|locus:2181910		597	KEA6 "K+ efflux antiporter 6"	0.984	0.956	0.654	3.3e-189
TAIR\|locus:2165326		568	KEA5 "K+ efflux antiporter 5"	0.874	0.892	0.595	1.2e-147
TIGR_CMR\|DET_1627		567	DET_1627 "sodium/hydrogen exch	0.267	0.273	0.410	7e-38
TIGR_CMR\|GSU_1204		684	GSU_1204 "sodium/hydrogen exch	0.584	0.495	0.274	3.5e-36
UNIPROTKB\|A5D7N7		677	TMCO3 "Uncharacterized protein	0.556	0.477	0.319	9.3e-36
UNIPROTKB\|F1RN34		678	TMCO3 "Uncharacterized protein	0.658	0.563	0.285	5.1e-33
UNIPROTKB\|Q6UWJ1		677	TMCO3 "Transmembrane and coile	0.315	0.270	0.364	2.8e-32
MGI\|MGI:2444946		678	Tmco3 "transmembrane and coile	0.667	0.570	0.271	6.3e-32
UNIPROTKB\|E1BT78		678	TMCO3 "Uncharacterized protein	0.767	0.656	0.253	8.1e-32

TAIR\|locus:2050382 KEA4 "K+ efflux antiporter 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1900 (673.9 bits), Expect = 3.4e-196, P = 3.4e-196
 Identities = 403/582 (69%), Positives = 432/582 (74%)

Query:     1 MRIFLTLFVIVSLLLCFASTESVTELDSEINXXXXXXXXXXXXELNNTGSK--EDSFADM 58
             MR+ LTL +I +    F+   S  E D+E +            E N T +K  EDSFADM
Sbjct:    16 MRL-LTLLLICTFFFFFSFAYSA-ESDNETDSVVTREINGTVVESNATSAKPREDSFADM 73

Query:    59 IDRALEKEFNESEQNEAADPGSFNNSVAGQQAVLETVARVXXXXXXXXXXXSFQFHDVFN 118
             IDRALEKEF +++QNE  DPGSFNNSVA QQAVLETVARV              F   FN
Sbjct:    74 IDRALEKEFPDNDQNEVPDPGSFNNSVADQQAVLETVARVKPKKNETKTKEEKSF---FN 130

Query:   119 LDNENGAEDTPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACA 178
             LDNENG EDTP LIDRKDNVFI+SNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACA
Sbjct:   131 LDNENGVEDTPRLIDRKDNVFIMSNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACA 190

Query:   179 GQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVA 238
             GQPVITGYLLAGS+IGPGG SFVSEMVQVETVAQFGVIFLLFALGLEFS AKLRVVRAVA
Sbjct:   191 GQPVITGYLLAGSIIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSAAKLRVVRAVA 250

Query:   239 ILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQ 298
             I GGLLQIFLFMCL GI ASLCGGK +EG+FVG  LSMSSTAVVLKFLMERNSISALHGQ
Sbjct:   251 IPGGLLQIFLFMCLSGITASLCGGKLTEGIFVGAFLSMSSTAVVLKFLMERNSISALHGQ 310

Query:   299 VTIGTLILQDCAVGLLFAXXXXXXXXXXXXXXXXXMTKSXXXXXXXXXXXXXXSRTCVPW 358
             +T+GTLILQDCAVGLLFA                 M KS              SRT VPW
Sbjct:   311 ITVGTLILQDCAVGLLFALLPVLGGTSGVLQGVLSMAKSLAILIAFLGALFVLSRTWVPW 370

Query:   359 CLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLE 418
              LKLM SLSSQTNELYQLA+VAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLE
Sbjct:   371 FLKLMTSLSSQTNELYQLAAVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLE 430

Query:   419 QVEPIRNFFAALFLASIGMLIHVHFLWNHVDXXXXXXXXXXXXXXXXXXXXXXGFRYSNK 478
             QVEPIRNFFAALFLASIGMLIH+HFLWNHVD                       F Y+NK
Sbjct:   431 QVEPIRNFFAALFLASIGMLIHMHFLWNHVDILLAAVLLVIVIKTVVVAIVVKVFGYNNK 490

Query:   479 TSLLVGMSLAQIGEFAFVLLSRASNXXXXXXXXXXXXXXXXXXXXXXXPLLFKLIPAVVN 538
             T++LVGMSLAQIGEFAFVLLSRASN                       PLLFKLIPAVV+
Sbjct:   491 TAVLVGMSLAQIGEFAFVLLSRASNLHLIESKLYLLLLGTTALSLVTTPLLFKLIPAVVH 550

Query:   539 LGVLLRWFSPDSPIEIGYKGDSLRADSAKRITVMVQGSHHDS 580
             LGVLLRWFSPDS  EIG+KG+   ++SAKRI++M+QGS HDS
Sbjct:   551 LGVLLRWFSPDSSTEIGFKGELYHSESAKRISLMIQGSLHDS 592

GO:0006812 "cation transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=ISS

GO:0015079 "potassium ion transmembrane transporter activity" evidence=ISS

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR\|locus:2181910 KEA6 "K+ efflux antiporter 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165326 KEA5 "K+ efflux antiporter 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_1627 DET_1627 "sodium/hydrogen exchanger family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_1204 GSU_1204 "sodium/hydrogen exchanger family/TrkA domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7N7 TMCO3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RN34 TMCO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6UWJ1 TMCO3 "Transmembrane and coiled-coil domain-containing protein 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2444946 Tmco3 "transmembrane and coiled-coil domains 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BT78 TMCO3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VYR9	KEA5_ARATH	No assigned EC number	0.7095	0.8672	0.8855	no	no
B5X0N6	KEA6_ARATH	No assigned EC number	0.8173	0.9086	0.8827	no	no
Q9ZUN3	KEA4_ARATH	No assigned EC number	0.8392	0.95	0.9307	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00016584001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (574 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		580
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	2e-71
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	4e-62
COG4651		408	COG4651, RosB, Kef-type K+ transport system, predi	8e-57
PRK10669		558	PRK10669, PRK10669, putative cation:proton antipor	1e-52
PRK03659		601	PRK03659, PRK03659, glutathione-regulated potassiu	1e-48
TIGR00932		273	TIGR00932, 2a37, transporter, monovalent cation:pr	4e-43
PRK03562		621	PRK03562, PRK03562, glutathione-regulated potassiu	7e-40
PLN03159		832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	6e-06

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

 Score =  233 bits (597), Expect = 2e-71
 Identities = 108/376 (28%), Positives = 183/376 (48%), Gaps = 11/376 (2%)

Query: 161 LVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLF 220
            V++++ A   G+     G P + G +LAG ++GP G   V   + +E +A+ G+  LLF
Sbjct: 1   AVLLLLLALLAGLLARRLGLPPVVGLILAGILLGPSGLGLVEPDLDLEVLAELGLPLLLF 60

Query: 221 ALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKP---SEGVFVGVLLSMS 277
             GLE    +LR      +L  LL + +   L G++ +L GG      E +  G  LS +
Sbjct: 61  LAGLELDLRELRKNGKSILLLALLGVLIPFLL-GLLLALLGGLGIPLLEALLFGAALSAT 119

Query: 278 STAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKS 337
           S  VVL  L ER  ++   G + +G  +L D    +L A+L  L G  G+          
Sbjct: 120 SPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGVGGLSDLG-----L 174

Query: 338 LVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLE 397
           L+ +   +A+  +L      W L+L+   +S   EL  L  +A  LL A  ++ LGLS  
Sbjct: 175 LLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDRELEVLLVLALALLAALLAELLGLSGI 234

Query: 398 LGSFAAGVMISTTDLAQHTLEQVEPIRN-FFAALFLASIGMLIHVH-FLWNHVDILLAAV 455
           LG+F AG+++S    A    E++EP     F  LF  S+G+ + +   L + + ++L  +
Sbjct: 235 LGAFLAGLVLSNYAFANELSEKLEPFGYGLFLPLFFVSVGLSLDLSSLLLSLLLLVLLLL 294

Query: 456 LLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLL 515
           + +++ K + V  + +    S + +L+VG    Q G  +  L +    L L++ +LY LL
Sbjct: 295 VAILLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVSLALAAIGLQLGLIDRELYTLL 354

Query: 516 LGTTALSLVTTPLLFK 531
           +    L+ +  PLL K
Sbjct: 355 VAVVLLTTLLKPLLKK 370

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	Back alignment and domain information

>gnl\|CDD\|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>gnl\|CDD\|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>gnl\|CDD\|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>gnl\|CDD\|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		580
PLN03159		832	cation/H(+) antiporter 15; Provisional	100.0
PRK03562		621	glutathione-regulated potassium-efflux system prot	100.0
PRK03659		601	glutathione-regulated potassium-efflux system prot	100.0
PRK10669		558	putative cation:proton antiport protein; Provision	100.0
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	100.0
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.97
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.96
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.95
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.93
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.91
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.73
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.72
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	99.59
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.31
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	99.06
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	98.9
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	98.87
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	98.85
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	98.85
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.59
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.5
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	98.44
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	98.2
COG0385		319	Predicted Na+-dependent transporter [General funct	97.69
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	97.61
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	97.23
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.21
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	97.21
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	97.19
PRK03562		621	glutathione-regulated potassium-efflux system prot	97.14
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	97.09
TIGR00698		335	conserved hypothetical integral membrane protein.	97.05
PRK03659		601	glutathione-regulated potassium-efflux system prot	96.9
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	96.89
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	96.87
PRK10669		558	putative cation:proton antiport protein; Provision	96.76
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.72
COG2855		334	Predicted membrane protein [Function unknown]	96.47
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	96.47
TIGR00841		286	bass bile acid transporter. Functionally character	96.41
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	96.23
PRK05326		562	potassium/proton antiporter; Reviewed	96.18
TIGR00793		314	kdgT 2-keto-3-deoxygluconate transporter. This fam	96.04
PLN03159		832	cation/H(+) antiporter 15; Provisional	96.0
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	95.78
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	95.69
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	95.69
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	95.61
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	95.52
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.43
PRK03818		552	putative transporter; Validated	95.38
COG2855		334	Predicted membrane protein [Function unknown]	95.24
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	95.08
PRK05274		326	2-keto-3-deoxygluconate permease; Provisional	94.84
TIGR00698		335	conserved hypothetical integral membrane protein.	94.67
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	94.46
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	94.37
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	94.09
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	94.0
PRK04972		558	putative transporter; Provisional	93.4
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	93.29
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	93.16
PRK04972		558	putative transporter; Provisional	93.08
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	92.38
COG3180		352	AbrB Putative ammonia monooxygenase [General funct	91.86
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	91.76
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	91.38
TIGR01625		154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	91.32
COG2985		544	Predicted permease [General function prediction on	91.31
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	91.3
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	91.2
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	89.53
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	88.84
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	88.76
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	88.61
COG3493		438	CitS Na+/citrate symporter [Energy production and	88.43
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	87.9
TIGR00808		254	malonate_madM malonate transporter, MadM subunit.	87.76
PRK03818		552	putative transporter; Validated	87.33
COG2431		297	Predicted membrane protein [Function unknown]	87.3
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	86.77
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	85.82
PRK09903		314	putative transporter YfdV; Provisional	83.59
PRK09903		314	putative transporter YfdV; Provisional	81.4
PRK04125		141	murein hydrolase regulator LrgA; Provisional	80.58

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.1e-59  Score=539.81  Aligned_cols=425  Identities=18%  Similarity=0.308  Sum_probs=362.8

Q ss_pred             eecCCCeeeecCCCCC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCc-------
Q 047751          132 IDRKDNVFIISNPKSK-YPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSE-------  203 (580)
Q Consensus       132 id~~~~~~~~~~p~~~-~p~l~~d~~li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~-------  203 (580)
                      ..+++|+|+++||+++ +|.      ++.|++++++++++++++++|+|||+++|||++|+++||+++|.++.       
T Consensus        24 ~~~s~g~~~g~~pl~~~l~~------~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp   97 (832)
T PLN03159         24 MITTNGIWQGDNPLDFSLPL------FILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP   97 (832)
T ss_pred             CccCCcccccCCcccchHHH------HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence            4688999999999998 776      57999999999999999999999999999999999999999998742       


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHH
Q 047751          204 ---MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGK------PSEGVFVGVLL  274 (580)
Q Consensus       204 ---~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~------~~~al~ig~~l  274 (580)
                         .+.+++++++|++++||.+|+|+|++.+|+.+|+++.+++.++++|++++..++++++..      ....+++|.++
T Consensus        98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~al  177 (832)
T PLN03159         98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVAL  177 (832)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence               347999999999999999999999999999999999999999999998887766554321      24568999999


Q ss_pred             hhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 047751          275 SMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRT  354 (580)
Q Consensus       275 s~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~  354 (580)
                      |.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+..  . ....+.++..++++++++++.|+
T Consensus       178 S~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~--~-~~~l~~~l~~~~f~~~~~~v~r~  254 (832)
T PLN03159        178 SVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDST--S-LASLWVLLSSVAFVLFCFYVVRP  254 (832)
T ss_pred             HHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--c-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999887665443221  1 12234455566777777888888


Q ss_pred             HHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchhhHHHhHHhH-HHHHHHHHHH
Q 047751          355 CVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPI-RNFFAALFLA  433 (580)
Q Consensus       355 ~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~~~l~~~l~~i-~~~f~plFFv  433 (580)
                      +++|+.++.++. ...+|.++.++++++++++++++.+|+|+++|||++|+++|+.+.++++.++++++ .++|+|+||+
T Consensus       255 ~~~~~~r~~~~~-~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv  333 (832)
T PLN03159        255 GIWWIIRRTPEG-ETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFA  333 (832)
T ss_pred             HHHHHHHhCcCC-CCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888775432 23467777888888899999999999999999999999999988889999999998 6899999999


Q ss_pred             HHhhhhhHHhHhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHH
Q 047751          434 SIGMLIHVHFLWNH--VDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKL  511 (580)
Q Consensus       434 ~iGl~id~~~l~~~--~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~  511 (580)
                      ++|+++|+..+...  |.++++++++.+++|+++++++++++|+|+|+++.+|++|++||+++++++++|.+.|+++++.
T Consensus       334 ~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~  413 (832)
T PLN03159        334 ISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDES  413 (832)
T ss_pred             HhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchh
Confidence            99999999887543  3344555667789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHhh-hhhhhhhhhhhccCCCCCcccCCCCCCcCCCCCCceeeeecCCCC
Q 047751          512 YLLLLGTT-ALSLVTTPLLFKLI-PAVVNLGVLLRWFSPDSPIEIGYKGDSLRADSAKRITVMVQGSHH  578 (580)
Q Consensus       512 ~~~lv~~v-llS~l~~Pll~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  578 (580)
                      |+++++++ ++|.+++|++.++| |+++|..+-.|            ..++.+++++.|++.|+|+++|
T Consensus       414 f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r------------~i~~~~~~~elriL~cv~~~~~  470 (832)
T PLN03159        414 FAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRR------------TIQRSKHDAELRMLVCVHTPRN  470 (832)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCHHhhhcccccc------------ccccCCCCCceeEEEEeccCCc
Confidence            99998765 67999999999999 77655422111            1133456677899999999986

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>PRK05274 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain	Back alignment and domain information

>COG2985 Predicted permease [General function prediction only]	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>TIGR00808 malonate_madM malonate transporter, MadM subunit	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>COG2431 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK09903 putative transporter YfdV; Provisional	Back alignment and domain information

>PRK09903 putative transporter YfdV; Provisional	Back alignment and domain information

>PRK04125 murein hydrolase regulator LrgA; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		580
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 67/402 (16%), Positives = 110/402 (27%), Gaps = 154/402 (38%)

Query: 247 FLFMCLCGIIASLCGGKPSEGV--FVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTL 304
            LF  L          K  E V  FV  +L ++      KFLM    I     Q ++ T 
Sbjct: 66  RLFWTLLS--------KQEEMVQKFVEEVLRIN-----YKFLMSP--IKTEQRQPSMMTR 110

Query: 305 ILQDCAVGL-----LFALLPV---------------LGGSSGV-LQGVISMTKSLVTLIT 343
           +  +    L     +FA   V               L  +  V + GV+   K+      
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----- 165

Query: 344 FLAILTILS---RTCVP----WCLKLMISLSSQTNE---LYQLASVAFCLLVAWCSDKLG 393
            +A+   LS   +  +     W     ++L +  +    L  L        +    D   
Sbjct: 166 -VALDVCLSYKVQCKMDFKIFW-----LNLKNCNSPETVLEMLQK--LLYQI----DPNW 213

Query: 394 LSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFA------ALFLASIGMLI--HVHFLW 445
            S    S       S   L  H+++    +R           L       L+  +V    
Sbjct: 214 TSRSDHS-------SNIKLRIHSIQ--AELRRLLKSKPYENCL-------LVLLNV---Q 254

Query: 446 N--HVD-------ILL-------AAVLLVIVVKTVVVATVIKGFRYSNKTSLL---VGMS 486
           N    +       ILL          L       + +             SLL   +   
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 487 ---------------LAQIGEFAFVLLSRASN-LHLVEGKLYLLLLGTTALSL---VTTP 527
                          L+ I E     L+   N  H+   KL      TT +     V  P
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL------TTIIESSLNVLEP 368

Query: 528 LLFK-------------LIPAVVNLGVLLRWF--SPDSPIEI 554
             ++              IP ++ L ++  WF       + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTIL-LSLI--WFDVIKSDVMVV 407

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		580
1zcd_A		388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.87
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	98.15
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	82.61

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A	Back alignment and structure

Probab=99.87  E-value=7.6e-23  Score=215.72  Aligned_cols=297  Identities=13%  Similarity=0.053  Sum_probs=218.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCChhHH----HHhhh--HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcc
Q 047751          205 VQVETVAQFGVIFLLFALGLEFSTAKL----RVVRA--VAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSS  278 (580)
Q Consensus       205 ~~le~la~lGli~llF~~GLeld~~~l----~~~~~--~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS  278 (580)
                      ...+-+.+-.+.+++|.+|+|+|.+.+    ++.+|  .+...++.++++|+++    ++.++....++..-..+...|+
T Consensus        58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i----y~~~~~~~~~~~~gw~ip~ATd  133 (388)
T 1zcd_A           58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL----YLAFNYADPITREGWAIPAATD  133 (388)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH----HGGGCCSSTTHHHHTSSSSCCC
T ss_pred             cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH----HHHHhcCChhhhhhhHHHHHHH
Confidence            456778889999999999999999877    55555  4677888999999876    2445665566777888888899


Q ss_pred             HHHHHHHHhhhccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047751          279 TAVVLKFLMERNSI-SALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVP  357 (580)
Q Consensus       279 ~~Vv~~iL~e~~~~-~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~  357 (580)
                      .+....++...+.. ++..++.+++.+++||+.+|++++++..    ++.  +..   .... .++++++..+       
T Consensus       134 IAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----~~~--~~~---~l~~-~~~~~~~~~~-------  196 (388)
T 1zcd_A          134 IAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----NDL--SMA---SLGV-AAVAIAVLAV-------  196 (388)
T ss_dssp             HHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----CCC--CHH---HHHH-HHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc----CCc--cHH---HHHH-HHHHHHHHHH-------
Confidence            99999999998654 5556799999999999999999888632    111  111   1111 1111111111       


Q ss_pred             HHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC-----CchhhHHHhHHhHH-HHHHHHH
Q 047751          358 WCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT-----DLAQHTLEQVEPIR-NFFAALF  431 (580)
Q Consensus       358 ~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~-----~~~~~l~~~l~~i~-~~f~plF  431 (580)
                        .+   |.  ..++...+..+  .+..++.++..|+|+.+|+|++|+++|..     +..++++++++++. .+++|+|
T Consensus       197 --l~---r~--~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlF  267 (388)
T 1zcd_A          197 --LN---LC--GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLF  267 (388)
T ss_dssp             --HH---HT--TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHH
T ss_pred             --HH---Hh--cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              11   11  11222222223  23556777999999999999999999985     34678999999996 5889999


Q ss_pred             -HHHHhhhhhHH---hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHHhHHHHHHHH
Q 047751          432 -LASIGMLIHVH---FLWNHVDILLAAVLLVIVVKTVVVATVIKGF----------RYSNKTSLLVGMSLAQIGEFAFVL  497 (580)
Q Consensus       432 -Fv~iGl~id~~---~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~----------~~~~r~a~~lgl~L~~rG~~~lvl  497 (580)
                       |+..|.++|..   .+.+  ...+.+.+..+++|+++++..++..          |+++||...+|+.++.++++++++
T Consensus       268 aFanaGv~l~~~~~~~l~~--~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~I  345 (388)
T 1zcd_A          268 AFANAGVSLQGVTLDGLTS--ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFI  345 (388)
T ss_dssp             HHHHCCCCCSSSCCCTHHH--HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHH
T ss_pred             HHHhcCeeecccchhhccC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHH
Confidence             99999999874   2222  1223444566899999855555544          899999999999999999999999


Q ss_pred             HHHHHhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751          498 LSRASNLHL--VEGKLYLLLLGTTALSLVTTPLLFKLI  533 (580)
Q Consensus       498 a~~a~~~gi--i~~~~~~~lv~~vllS~l~~Pll~~l~  533 (580)
                      ++.+.+.+.  +.++.+..++...++|.+++|++.|..
T Consensus       346 a~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~  383 (388)
T 1zcd_A          346 ASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVR  383 (388)
T ss_dssp             HHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTT
T ss_pred             HHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999998876  356778888888999999999887764

PyMOL of 1zcd

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00