Citrus Sinensis ID: 047797

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------
Protein Sequence
MSCKLFLLLEYLALSSVILFQLEPRLGASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRDDDANTVEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAMNKSNL
Secondary Structure (PSIPRED)
cccEEHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEccccccEEEEEcccccccccccccccEEEcccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccHHHHcccccccEEEccccccccccccHHHHccccccccEEEcccccccccccccHHHcccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEccccccccccccEEEccccEEEEEEcccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccEEEccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHHccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEEEEEcccccEEcccccccEEEEccccccccccHHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccccHHHHccHcccEEEccccccccccccHHHcccccccEEEcccccccccccccHccccccEEEEcccccccccccHHHHHccccccEEEccccccccccccHHHHccccccEEEEcccccccccccccccccccccccEEEEcccccccccccccHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccHccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHcHHcccEEEcccccccccccHHHHHHHHcccEEEEccccEEEEccccccccccEEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHHHcccEEEccccccccccccccccccccEEEEcccccccccccccccccEEEEccccccccccHHHcccccEEEEEcccccccccccHcHcccccccEEEEccccccccccHHHHccccEEEEEcccccccccccHHHHHcccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHHHHHHHHccccccccccccccccccccccEHHHHHEEEcccccHHHHccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHccc
Coil and Loop (DISEMBL)
MSCKLFLLLEYLALSSVILFqleprlgasnnitRCIDEEREALLTFKQSLVDEYGvlsswgsedgkrdcckwrgvrcsnttghVKVLNLQTSDHEFARRKFlkgkispallklrglrhldlskndfggspvpefIGSLSKLRYLNlscgtpsskiphpfrdlsgfeyfnvensnlfsvGSLErlshlsslrHLDLScinltkssdwFQVVSQLHSLKTLVLrscylppinpsfIWLFNLSTSietldlsdnhlpsssvypwlfNLSRNILHLDlgfnhlqgsiPEAFQHMVSLRLLSLAsneleggipkffgnmcslnqlylprnklsGQLSELIQNLssgctvnsleglclyanditgpipdlgrfLSLKVLKLGENHLNGTINKSLSHLFKletlsldgnsftgVISETFFSNMSNLQMLFLADNSltlklshdwvpaFQLKWLSLAsckmgphfpnwlQTQNQLISLdisnigisdtipdwFWDLSIELFFLNLSnnhisgklpdlsvlksddividissnnfdgpipplpsnstflnlsknkfsglpdcwlnfnSLSILNLAnnrfsgkipdsmgflHNIQTLSlrnnrlngelpsslkncsklrvldlrknalfgevptcvggslQNLIILRLksnnfhgnipfQLCHLAFIQVLDLSlnnisgkipkcfsnfsmmiqekssnpiiglaneilvVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGltalnlsrnnltglippkigqlksldfldlsrnhfsgnipsslsllsglsvldlsynslsgkiplgtqlqsfnasvyagnlelcglplpnkcadeestpspgrdddantvedednqfITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAMNKSNL
Flexible Loop (DISEMBL)
MSCKLFLLLEYLALSSVILFQLEPRLGASNNITRCIDEEREALLTFKQSLVDEYGvlsswgsedgkrdCCKWRgvrcsnttghvkvlnlqtsdhEFARRKflkgkispallKLRGLRHLDlskndfggspVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFgevptcvggSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTpspgrdddantvEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAMNKSNL
Low Complexity Region (SEG)
MSCKlfllleylalssvilFQLEPRLGASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPAllklrglrhldlSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGslerlshlsslrhldlsCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPsslsllsglsvldlsYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRDDDANTVEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAMNKSNL
Disordered region (IsUnstruct)
**CKLFLLLEYLALSSVILFQLEPRLGASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPI******STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLP**************************QFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAA*******
Disordered Region (DISOPRED)
**CKLFLLLEYLALSSVILFQLEPRLGA******CIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQE******IGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPL***************************QFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAMNKSNL
Disordered Region (DISEMBL)
MSCKLFLLLEYLALSSVILFQLEPRLGASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKC************DDANTVEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAMNKSNL
Disordered Region (DISPRO)
*SCKLFLLLEYLALSSVILFQLEPRLGASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKC*********************DNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAMNKSNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCKLFLLLEYLALSSVILFQLEPRLGASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRDDDANTVEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAMNKSNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	927	2.2.26 [Sep-21-2011]
Q9FL28	1173	LRR receptor-like serine/	no	no	0.813	0.642	0.315	5e-74
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.747	0.628	0.312	7e-68
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.813	0.603	0.313	3e-64
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.802	0.594	0.296	6e-62
Q9C9H7	847	Receptor-like protein 12	no	no	0.810	0.886	0.294	2e-61
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.792	0.667	0.296	2e-59
O49318	1124	Probable leucine-rich rep	no	no	0.742	0.612	0.289	3e-58
Q9LP24	1120	Probable leucine-rich rep	no	no	0.752	0.623	0.294	9e-58
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.674	0.550	0.314	5e-54
C0LGV1	1135	LRR receptor-like serine/	no	no	0.624	0.510	0.322	9e-53

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  280 bits (715), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 260/824 (31%), Positives = 391/824 (47%), Gaps = 70/824 (8%)

Query: 34  RCIDEEREALLTFKQSLV-DEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTS 92
           +  + E EAL +FK  +  D  GVLS W +  G    C W G+ C ++TGHV  ++L   
Sbjct: 25  QSFEPEIEALKSFKNGISNDPLGVLSDW-TIIGSLRHCNWTGITC-DSTGHVVSVSL--- 79

Query: 93  DHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPS 152
                  K L+G +SPA+  L  L+ LDL+ N F G  +P  IG L++L  L L     S
Sbjct: 80  -----LEKQLEGVLSPAIANLTYLQVLDLTSNSFTGK-IPAEIGKLTELNQLILYLNYFS 133

Query: 153 SKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQ 212
             IP    +L    Y ++ N NL S    E +   SSL  +     NLT      + +  
Sbjct: 134 GSIPSGIWELKNIFYLDLRN-NLLSGDVPEEICKTSSLVLIGFDYNNLT--GKIPECLGD 190

Query: 213 LHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHL 272
           L  L+  V                            + NHL  S   P       N+  L
Sbjct: 191 LVHLQMFVA---------------------------AGNHLTGS--IPVSIGTLANLTDL 221

Query: 273 DLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLS 332
           DL  N L G IP  F ++++L+ L L  N LEG IP   GN  SL QL L  N+L+G++ 
Sbjct: 222 DLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIP 281

Query: 333 ELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHL 391
             + NL        L+ L +Y N +T  IP  L R   L  L L ENHL G I++ +  L
Sbjct: 282 AELGNLVQ------LQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFL 335

Query: 392 FKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASC 451
             LE L+L  N+FTG   ++  +N+ NL +L +  N+++ +L  D      L+ LS    
Sbjct: 336 ESLEVLTLHSNNFTGEFPQSI-TNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDN 394

Query: 452 KMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSV 511
            +    P+ +     L  LD+S+  ++  IP  F  ++  L F+++  NH +G++PD   
Sbjct: 395 LLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN--LTFISIGRNHFTGEIPDDIF 452

Query: 512 LKSDDIVIDISSNNFDGPIPPLPSNST---FLNLSKNKFSG-LPDCWLNFNSLSILNLAN 567
             S+   + ++ NN  G + PL         L +S N  +G +P    N   L+IL L +
Sbjct: 453 NCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHS 512

Query: 568 NRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVG 627
           N F+G+IP  M  L  +Q L + +N L G +P  + +   L VLDL  N   G++P    
Sbjct: 513 NGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFS 572

Query: 628 GSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSS 687
             L++L  L L+ N F+G+IP  L  L+ +   D+S N ++G IP       ++   K+ 
Sbjct: 573 -KLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPG-----ELLASLKNM 626

Query: 688 NPIIGLANEILV--VPGYIYYFRYLDNVLLT---WKGSEHEYKSTLGFVKYLDLSSNKLC 742
              +  +N +L   +P  +     +  + L+   + GS          V  LD S N L 
Sbjct: 627 QLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLS 686

Query: 743 EAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLS 801
             IP+E+   +  + +LNLSRN+ +G IP   G +  L  LDLS N+ +G IP SL+ LS
Sbjct: 687 GHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLS 746

Query: 802 GLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNK 845
            L  L L+ N+L G +P     ++ NAS   GN +LCG   P K
Sbjct: 747 TLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLK 790

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  259 bits (662), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 262/839 (31%), Positives = 375/839 (44%), Gaps = 146/839 (17%)

Query: 33  TRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTS 92
           T  ++ E + LL  K   VD    L +W S D     C W GV CSN +   +VL+L  S
Sbjct: 24  TTGLNLEGQYLLEIKSKFVDAKQNLRNWNSNDSVP--CGWTGVMCSNYSSDPEVLSLNLS 81

Query: 93  DHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPS 152
                    L GK+SP++  L  L+ LDLS N   G  +P+ IG+ S L  L L+     
Sbjct: 82  SM------VLSGKLSPSIGGLVHLKQLDLSYNGLSGK-IPKEIGNCSSLEILKLNNNQFD 134

Query: 153 SKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQ 212
            +IP     L   E   + N+ +     +E                           +  
Sbjct: 135 GEIPVEIGKLVSLENLIIYNNRISGSLPVE---------------------------IGN 167

Query: 213 LHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHL 272
           L SL  LV  S              N+S            LP S     + NL R +   
Sbjct: 168 LLSLSQLVTYSN-------------NIS----------GQLPRS-----IGNLKR-LTSF 198

Query: 273 DLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLS 332
             G N + GS+P       SL +L LA N+L G +PK  G +  L+Q+ L  N+ SG + 
Sbjct: 199 RAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIP 258

Query: 333 ELIQNLSSGCTVNSLEGLCLYANDITGPIP-DLGRFLSLKVLKLGENHLNGTINKSLSHL 391
             I N    CT  SLE L LY N + GPIP +LG   SL+ L L  N LNGTI + + +L
Sbjct: 259 REISN----CT--SLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNL 312

Query: 392 FKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASC 451
                +    N+ TG I      N+  L++L+L +N LT  +  +      L  L L+  
Sbjct: 313 SYAIEIDFSENALTGEIPLEL-GNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSIN 371

Query: 452 KMGPHFPNWLQTQNQLISLDISNIGISDTIP---DWFWDLSIELFFLNLSNNHISGKLPD 508
            +    P   Q    L  L +    +S TIP    W+ DL    + L++S+NH+SG++P 
Sbjct: 372 ALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDL----WVLDMSDNHLSGRIPS 427

Query: 509 LSVLKSDDIVIDISSNNFDGPIPP-LPSNSTF--LNLSKNKFSG-LPDCWLNFNSLSILN 564
              L S+ I++++ +NN  G IP  + +  T   L L++N   G  P       +++ + 
Sbjct: 428 YLCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIE 487

Query: 565 LANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPT 624
           L  NRF G IP  +G    +Q L L +N   GELP  +   S+L  L++  N L GEVP+
Sbjct: 488 LGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPS 547

Query: 625 CVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQE 684
            +  + + L  L +  NNF G +P ++  L  +++L LS NN+SG IP    N S + + 
Sbjct: 548 EIF-NCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTE- 605

Query: 685 KSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEA 744
                                                            L +  N    +
Sbjct: 606 -------------------------------------------------LQMGGNLFNGS 616

Query: 745 IPEEITDLVGLT-ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGL 803
           IP E+  L GL  ALNLS N LTG IPP++  L  L+FL L+ N+ SG IPSS + LS L
Sbjct: 617 IPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSL 676

Query: 804 SVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKC------ADEESTPSPG 856
              + SYNSL+G IPL   L++ + S + GN  LCG PL N+C      A  +ST  PG
Sbjct: 677 LGYNFSYNSLTGPIPL---LRNISMSSFIGNEGLCGPPL-NQCIQTQPFAPSQSTGKPG 731

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  247 bits (631), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 280/893 (31%), Positives = 414/893 (46%), Gaps = 139/893 (15%)

Query: 36  IDEEREALLTFKQSLV---DEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTS 92
           I+ + + LL  K+SLV    E   L  W S++   + C W GV C NT G  +V+ L  +
Sbjct: 23  INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDN--INYCSWTGVTCDNT-GLFRVIALNLT 79

Query: 93  DHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPS 152
                    L G ISP   +   L HLDLS N+  G P+P  + +L+ L  L L     +
Sbjct: 80  GLG------LTGSISPWFGRFDNLIHLDLSSNNLVG-PIPTALSNLTSLESLFLFSNQLT 132

Query: 153 SKIPHPFRDLSGFEYFNVENSNLFSVGSL-ERLSHLSSLRHLDLSCINLTKSSDWFQVVS 211
            +IP     L       + ++ L  VG + E L +L +L+ L L+   LT       + S
Sbjct: 133 GEIPSQLGSLVNIRSLRIGDNEL--VGDIPETLGNLVNLQMLALASCRLTGP-----IPS 185

Query: 212 QLHSL---KTLVLRSCYLP-PI-----NPSFIWLFNLSTSI---------------ETLD 247
           QL  L   ++L+L+  YL  PI     N S + +F  + ++               E L+
Sbjct: 186 QLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILN 245

Query: 248 LSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI 307
           L++N L +  +   L  +S+ + +L L  N LQG IP++   + +L+ L L++N L G I
Sbjct: 246 LANNSL-TGEIPSQLGEMSQ-LQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEI 303

Query: 308 PKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS-LEGLCLYANDITGPIP-DLG 365
           P+ F NM  L  L L  N LSG L + I      C+ N+ LE L L    ++G IP +L 
Sbjct: 304 PEEFWNMSQLLDLVLANNHLSGSLPKSI------CSNNTNLEQLVLSGTQLSGEIPVELS 357

Query: 366 RFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLA 425
           +  SLK L L  N L G+I ++L  L +L  L L  N+  G +S +  SN++NLQ L L 
Sbjct: 358 KCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSI-SNLTNLQWLVLY 416

Query: 426 DNSLTLKLSHDWVPAFQLKWLSL----------------ASCKM----GPHF-------- 457
            N+L  KL  +     +L+ L L                 S KM    G HF        
Sbjct: 417 HNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSI 476

Query: 458 --------------------PNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNL 497
                               P  L   +QL  LD+++  +S +IP  F  L   L  L L
Sbjct: 477 GRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLK-GLEQLML 535

Query: 498 SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFL--NLSKNKFSG-LPDCW 554
            NN + G LPD  +   +   I++S N  +G I PL  +S++L  +++ N F   +P   
Sbjct: 536 YNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLEL 595

Query: 555 LNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614
            N  +L  L L  N+ +GKIP ++G +  +  L + +N L G +P  L  C KL  +DL 
Sbjct: 596 GNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLN 655

Query: 615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKC 674
            N L G +P  +G  L  L  L+L SN F  ++P +L +   + VL L  N+++G IP+ 
Sbjct: 656 NNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQE 714

Query: 675 FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYL 734
             N                        G +       N    + GS  +    L  +  L
Sbjct: 715 IGNL-----------------------GALNVLNLDKN---QFSGSLPQAMGKLSKLYEL 748

Query: 735 DLSSNKLCEAIPEEITDLVGL-TALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI 793
            LS N L   IP EI  L  L +AL+LS NN TG IP  IG L  L+ LDLS N  +G +
Sbjct: 749 RLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEV 808

Query: 794 PSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKC 846
           P S+  +  L  L++S+N+L GK  L  Q   + A  + GN  LCG PL ++C
Sbjct: 809 PGSVGDMKSLGYLNVSFNNLGGK--LKKQFSRWPADSFLGNTGLCGSPL-SRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  239 bits (611), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 264/890 (29%), Positives = 389/890 (43%), Gaps = 146/890 (16%)

Query: 38  EEREALLTFKQSLV---DEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDH 94
           ++ + LL  K S +    E  VL  W S  G    C W GV C    G  +++ L  S  
Sbjct: 28  DDLQTLLELKNSFITNPKEEDVLRDWNS--GSPSYCNWTGVTC----GGREIIGLNLSGL 81

Query: 95  EFARRKFLKGKISPALLKLRGLRHLDLSKNDFGG------------------------SP 130
                  L G ISP++ +   L H+DLS N   G                          
Sbjct: 82  G------LTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGD 135

Query: 131 VPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSL 190
           +P  +GSL  L+ L L     +  IP  F +L   +   + +  L  +    R   L  L
Sbjct: 136 IPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIP-SRFGRLVQL 194

Query: 191 RHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSD 250
           + L L    L        + +++ +  +L L +     +N S     N   +++TL+L D
Sbjct: 195 QTLILQDNELEGP-----IPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGD 249

Query: 251 NHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKF 310
           N    S   P       +I +L+L  N LQG IP+    + +L+ L L+SN L G I + 
Sbjct: 250 NSF--SGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEE 307

Query: 311 FGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVN-SLEGLCLYANDITGPIP-DLGRFL 368
           F  M  L  L L +N+LSG L + I      C+ N SL+ L L    ++G IP ++    
Sbjct: 308 FWRMNQLEFLVLAKNRLSGSLPKTI------CSNNTSLKQLFLSETQLSGEIPAEISNCQ 361

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
           SLK+L L  N L G I  SL  L +L  L L+ NS  G +S +  SN++NLQ   L  N+
Sbjct: 362 SLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSI-SNLTNLQEFTLYHNN 420

Query: 429 LTLKLSH-----------------------------------DW--------VPAF---- 441
           L  K+                                     DW        +P+     
Sbjct: 421 LEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRL 480

Query: 442 -QLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL-SIELFFLNLSN 499
             L  L L   ++  + P  L   +Q+  +D+++  +S +IP  F  L ++ELF +   N
Sbjct: 481 KDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMI--YN 538

Query: 500 NHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFL--NLSKNKFSG-LPDCWLN 556
           N + G LPD  +   +   I+ SSN F+G I PL  +S++L  ++++N F G +P     
Sbjct: 539 NSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGK 598

Query: 557 FNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
             +L  L L  N+F+G+IP + G +  +  L +  N L+G +P  L  C KL  +DL  N
Sbjct: 599 STNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNN 658

Query: 617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFS 676
            L G +PT +G  L  L  L+L SN F G++P ++  L  I  L L  N+++G IP+   
Sbjct: 659 YLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIG 717

Query: 677 NFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYL-- 734
           N   +         + L    L  P                        ST+G +  L  
Sbjct: 718 NLQAL-------NALNLEENQLSGP----------------------LPSTIGKLSKLFE 748

Query: 735 -DLSSNKLCEAIPEEITDLVGL-TALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792
             LS N L   IP EI  L  L +AL+LS NN TG IP  I  L  L+ LDLS N   G 
Sbjct: 749 LRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGE 808

Query: 793 IPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPL 842
           +P  +  +  L  L+LSYN+L GK  L  Q   + A  + GN  LCG PL
Sbjct: 809 VPGQIGDMKSLGYLNLSYNNLEGK--LKKQFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  238 bits (606), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 264/896 (29%), Positives = 401/896 (44%), Gaps = 145/896 (16%)

Query: 28  ASNNITRCIDEEREALLTFKQSLVDEYGVLSSW-------GSEDGKRDCCKWRGVRCSNT 80
           AS++   C D++R+ALL F+     E+ + +SW       G  +   DCC W GV C++ 
Sbjct: 27  ASSSPHFCRDDQRDALLEFR----GEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDK 82

Query: 81  TGHVKVLNLQTSDHEFARRKFLKG--KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSL 138
           +G V  L++  +        FL    K + +L KL+ LRHLDL+  +  G  +P  +G+L
Sbjct: 83  SGQVISLDIPNT--------FLNNYLKTNSSLFKLQYLRHLDLTNCNLYGE-IPSSLGNL 133

Query: 139 SKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCI 198
           S L  +NL       +IP    +L+   +  + N N+ +      L +LS L +L+L   
Sbjct: 134 SHLTLVNLYFNKFVGEIPASIGNLNQLRHLILAN-NVLTGEIPSSLGNLSRLVNLELFSN 192

Query: 199 NLT-KSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSS 257
            L  K  D    +  L  L+ L L S  L                          +PSS 
Sbjct: 193 RLVGKIPD---SIGDLKQLRNLSLASNNLI-----------------------GEIPSS- 225

Query: 258 VYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSL 317
               L NLS N++HL L  N L G +P +  +++ LR++S  +N L G IP  F N+  L
Sbjct: 226 ----LGNLS-NLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKL 280

Query: 318 NQLYLPRNKLSGQLS---ELIQNLS---------------SGCTVNSLEGLCLYANDITG 359
           +   L  N  +        +  NL                S   + SLE + L  N  TG
Sbjct: 281 SIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTG 340

Query: 360 PI--PDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMS 417
           PI   +      L+ L LG N L+G I +S+S L  LE L +  N+FTG I  T  S + 
Sbjct: 341 PIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPT-ISKLV 399

Query: 418 NLQMLFLADNSLTLKLSHDWVPA--FQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNI 475
           NL  L L+ N+L  +     VPA  ++L  + L+       F N  Q +  +  LD+++ 
Sbjct: 400 NLLHLDLSKNNLEGE-----VPACLWRLNTMVLSHNSFSS-FENTSQEEALIEELDLNSN 453

Query: 476 GISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPS 535
                IP     LS  L FL+LSNN  SG +P  S ++           NF G I  L  
Sbjct: 454 SFQGPIPYMICKLS-SLGFLDLSNNLFSGSIP--SCIR-----------NFSGSIKEL-- 497

Query: 536 NSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL 594
                NL  N FSG LPD +     L  L++++N+  GK P S+     ++ +++ +N++
Sbjct: 498 -----NLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKI 552

Query: 595 NGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHL 654
               PS L++   L VL+LR N  +G +                   + H +I FQ    
Sbjct: 553 KDIFPSWLESLPSLHVLNLRSNKFYGPL------------------YHRHASIGFQ---- 590

Query: 655 AFIQVLDLSLNNISGKIPK-CFSNFSMMIQEKSSNPIIGLANEI--LVVPGYIYYFRYLD 711
             ++++D+S NN SG +P   FSN+  M           L  E+   +   + Y   Y  
Sbjct: 591 -SLRIIDISHNNFSGTLPPYYFSNWKDMTT---------LTEEMDQYMTEFWRYADSYYH 640

Query: 712 NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPP 771
            + +  KG +  ++      + +D S NK+   IPE +  L  L  LNLS N  T +IP 
Sbjct: 641 EMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPR 700

Query: 772 KIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVY 831
            +  L  L+ LD+SRN  SG IP  L+ LS LS ++ S+N L G +P GTQ Q    S +
Sbjct: 701 FLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSF 760

Query: 832 AGNLELCGLPLPNKCADEESTPSPGRDDDANTVEDEDNQFITLGFYVSLTLGFFVG 887
             N  L G  L + C D  +  +P      +  E E+N F  +   ++   G   G
Sbjct: 761 LDNPGLYG--LEDICRDTGAL-NPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCG 813

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  231 bits (590), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 257/868 (29%), Positives = 375/868 (43%), Gaps = 133/868 (15%)

Query: 32  ITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQT 91
           + R ++EE   LL FK  L D  G L+SW   D   + C W G+ C++            
Sbjct: 20  LVRSLNEEGRVLLEFKAFLNDSNGYLASWNQLDS--NPCNWTGIACTH------------ 65

Query: 92  SDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTP 151
                                LR +  +DL+  +  G+  P  I  L  LR LN+S    
Sbjct: 66  ---------------------LRTVTSVDLNGMNLSGTLSP-LICKLHGLRKLNVSTNFI 103

Query: 152 SSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVS 211
           S  IP                         + LS   SL  LDL C N        Q+ +
Sbjct: 104 SGPIP-------------------------QDLSLCRSLEVLDL-CTNRFHGVIPIQL-T 136

Query: 212 QLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILH 271
            + +LK L L   YL    P  I   NLS S++ L +  N+L  + V P      R +  
Sbjct: 137 MIITLKKLYLCENYLFGSIPRQIG--NLS-SLQELVIYSNNL--TGVIPPSMAKLRQLRI 191

Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
           +  G N   G IP       SL++L LA N LEG +PK    + +L  L L +N+LSG++
Sbjct: 192 IRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEI 251

Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIP-DLGRFLSLKVLKLGENHLNGTINKSLSH 390
              + N+S       LE L L+ N  TG IP ++G+   +K L L  N L G I + + +
Sbjct: 252 PPSVGNISR------LEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGN 305

Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLAS 450
           L     +    N  TG I + F  ++ NL++L L +N L                     
Sbjct: 306 LIDAAEIDFSENQLTGFIPKEF-GHILNLKLLHLFENIL--------------------- 343

Query: 451 CKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLS 510
             +GP  P  L     L  LD+S   ++ TIP     L   L  L L +N + GK+P L 
Sbjct: 344 --LGP-IPRELGELTLLEKLDLSINRLNGTIPQELQFLPY-LVDLQLFDNQLEGKIPPLI 399

Query: 511 VLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRF 570
              S+  V+D+S+N+  GPIP                      +  F +L +L+L +N+ 
Sbjct: 400 GFYSNFSVLDMSANSLSGPIPA--------------------HFCRFQTLILLSLGSNKL 439

Query: 571 SGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSL 630
           SG IP  +    ++  L L +N+L G LP  L N   L  L+L +N L G +   +G  L
Sbjct: 440 SGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLG-KL 498

Query: 631 QNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF-SNFSMMIQEKSSNP 689
           +NL  LRL +NNF G IP ++ +L  I   ++S N ++G IPK   S  ++   + S N 
Sbjct: 499 KNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNK 558

Query: 690 IIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI 749
             G   + L    Y+   R  DN L    G        L  +  L L  N L E IP E+
Sbjct: 559 FSGYIAQELGQLVYLEILRLSDNRL---TGEIPHSFGDLTRLMELQLGGNLLSENIPVEL 615

Query: 750 TDLVGLT-ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDL 808
             L  L  +LN+S NNL+G IP  +G L+ L+ L L+ N  SG IP+S+  L  L + ++
Sbjct: 616 GKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNI 675

Query: 809 SYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRDDDAN-TVEDE 867
           S N+L G +P     Q  ++S +AGN  LC     N          P  D   N  +   
Sbjct: 676 SNNNLVGTVPDTAVFQRMDSSNFAGNHGLC-----NSQRSHCQPLVPHSDSKLNWLINGS 730

Query: 868 DNQFITLGFYVSLTLGFFVGFWGVCGTL 895
             Q I     + +   F + F G+C T+
Sbjct: 731 QRQKILTITCIVIGSVFLITFLGLCWTI 758

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  227 bits (579), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 236/814 (28%), Positives = 359/814 (44%), Gaps = 126/814 (15%)

Query: 33  TRCIDEEREALLTFK-QSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQT 91
           +  ++ + + LL  K +   D    L +W   D     C W GV CS+        +L  
Sbjct: 30  SESLNSDGQFLLELKNRGFQDSLNRLHNWNGID--ETPCNWIGVNCSSQGSSSSSNSLVV 87

Query: 92  SDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTP 151
           +  + +    L G +SP++  L  L +L+L+ N   G  +P  IG+ SKL  + L     
Sbjct: 88  TSLDLSSMN-LSGIVSPSIGGLVNLVYLNLAYNALTGD-IPREIGNCSKLEVMFL----- 140

Query: 152 SSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVS 211
                               N+N F       ++ LS LR  ++   N   S    + + 
Sbjct: 141 --------------------NNNQFGGSIPVEINKLSQLRSFNIC--NNKLSGPLPEEIG 178

Query: 212 QLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILH 271
            L++L+ LV              +  NL+            LP S     L NL++ +  
Sbjct: 179 DLYNLEELV-------------AYTNNLTGP----------LPRS-----LGNLNK-LTT 209

Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
              G N   G+IP      ++L+LL LA N + G +PK  G +  L ++ L +NK SG +
Sbjct: 210 FRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFI 269

Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIP-DLGRFLSLKVLKLGENHLNGTINKSLSH 390
            + I NL+S      LE L LY N + GPIP ++G   SLK L L +N LNGTI K L  
Sbjct: 270 PKDIGNLTS------LETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGK 323

Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLAS 450
           L K+  +    N  +G I     S +S L++L+L  N LT  +                 
Sbjct: 324 LSKVMEIDFSENLLSGEIP-VELSKISELRLLYLFQNKLTGII----------------- 365

Query: 451 CKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLS 510
                  PN L     L  LD+S   ++  IP  F +L+  +  L L +N +SG +P   
Sbjct: 366 -------PNELSKLRNLAKLDLSINSLTGPIPPGFQNLT-SMRQLQLFHNSLSGVIPQGL 417

Query: 511 VLKSDDIVIDISSNNFDGPIPPL---PSNSTFLNLSKNK-FSGLPDCWLNFNSLSILNLA 566
            L S   V+D S N   G IPP     SN   LNL  N+ F  +P   L   SL  L + 
Sbjct: 418 GLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVV 477

Query: 567 NNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCV 626
            NR +G+ P  +  L N+  + L  NR +G LP  +  C KL+ L L  N     +P  +
Sbjct: 478 GNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEI 537

Query: 627 GGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKS 686
              L NL+   + SN+  G IP ++ +   +Q LDLS N+  G +P              
Sbjct: 538 S-KLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLP-------------- 582

Query: 687 SNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP 746
             P +G  +++ ++   +   R+  N+  T     H        +  L +  N    +IP
Sbjct: 583 --PELGSLHQLEIL--RLSENRFSGNIPFTIGNLTH--------LTELQMGGNLFSGSIP 630

Query: 747 EEITDLVGLT-ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSV 805
            ++  L  L  A+NLS N+ +G IPP+IG L  L +L L+ NH SG IP++   LS L  
Sbjct: 631 PQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLG 690

Query: 806 LDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCG 839
            + SYN+L+G++P     Q+   + + GN  LCG
Sbjct: 691 CNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCG 724

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  226 bits (575), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 245/832 (29%), Positives = 374/832 (44%), Gaps = 134/832 (16%)

Query: 39  EREALLTFKQSLVDEYGVLSSW---GSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHE 95
           E  ALL +K +  +    LSSW    + +    C  W GV C N+ G ++ LNL  +  E
Sbjct: 33  EANALLKWKSTFTNS-SKLSSWVHDANTNTSFSCTSWYGVSC-NSRGSIEELNLTNTGIE 90

Query: 96  FARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKI 155
              + F         + L  L ++DLS N   G+  P+F G+LSKL Y +LS    + +I
Sbjct: 91  GTFQDF-------PFISLSNLAYVDLSMNLLSGTIPPQF-GNLSKLIYFDLSTNHLTGEI 142

Query: 156 PHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHS 215
                +L       +  + L SV   E L ++ S+  L LS   LT S     + S L +
Sbjct: 143 SPSLGNLKNLTVLYLHQNYLTSVIPSE-LGNMESMTDLALSQNKLTGS-----IPSSLGN 196

Query: 216 LKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLG 275
           LK L++   Y                        +N+L +  + P L N+  ++  L L 
Sbjct: 197 LKNLMVLYLY------------------------ENYL-TGVIPPELGNM-ESMTDLALS 230

Query: 276 FNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELI 335
            N L GSIP    ++ +L +L L  N L G IP   GNM S+  L L +NKL+G +   +
Sbjct: 231 QNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSL 290

Query: 336 QNLSSGCTVNSLEGLCLYANDITGPI-PDLGRFLSLKVLKLGENHLNGTINKSLSHLFKL 394
            NL       +L  L L+ N +TG I P LG   S+  L+L  N L G+I  SL +L  L
Sbjct: 291 GNLK------NLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGNLKNL 344

Query: 395 ETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG 454
             L L  N  TGVI      NM ++  L L +N LT  +   +     L +L L    + 
Sbjct: 345 TILYLYENYLTGVIPPE-LGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLT 403

Query: 455 PHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKS 514
              P  L     +I+LD+S   ++ ++PD F + + +L  L L  NH+SG +P      S
Sbjct: 404 GVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFT-KLESLYLRVNHLSGAIPPGVANSS 462

Query: 515 DDIVIDISSNNF------------------------DGPIPPLPSNSTFLNLSK---NKF 547
               + + +NNF                        +GPIP    +   L  ++   NKF
Sbjct: 463 HLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKF 522

Query: 548 SG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCS 606
           +G + + +  +  L+ ++ ++N+F G+I  +      +  L + NN + G +P+ + N +
Sbjct: 523 TGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMT 582

Query: 607 KLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNN 666
           +L  LDL  N LFGE+P  + G+L NL  LRL  N   G +P  L  L  ++ LDLS NN
Sbjct: 583 QLVELDLSTNNLFGELPEAI-GNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNN 641

Query: 667 ISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKS 726
            S +IP+ F +F  +                                        H+   
Sbjct: 642 FSSEIPQTFDSFLKL----------------------------------------HD--- 658

Query: 727 TLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSR 786
                  ++LS NK   +IP  ++ L  LT L+LS N L G IP ++  L+SLD LDLS 
Sbjct: 659 -------MNLSRNKFDGSIP-RLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSH 710

Query: 787 NHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELC 838
           N+ SG IP++   +  L+ +D+S N L G +P     +   A     N+ LC
Sbjct: 711 NNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  213 bits (543), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 228/726 (31%), Positives = 329/726 (45%), Gaps = 101/726 (13%)

Query: 182 ERLSHLSSLRHLDLSC--------INLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSF 233
           +R+S L  LR L L           +L   +    V  Q +SL      S  LPP     
Sbjct: 86  DRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSL------SGKLPPA---- 135

Query: 234 IWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSL 293
             + NL TS+E  +++ N L  S   P    L  ++  LD+  N   G IP    ++  L
Sbjct: 136 --MRNL-TSLEVFNVAGNRL--SGEIP--VGLPSSLQFLDISSNTFSGQIPSGLANLTQL 188

Query: 294 RLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLY 353
           +LL+L+ N+L G IP   GN+ SL  L+L  N L G L   I N S              
Sbjct: 189 QLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCS-------------- 234

Query: 354 ANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFF 413
                          SL  L   EN + G I  +   L KLE LSL  N+F+G +  + F
Sbjct: 235 ---------------SLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLF 279

Query: 414 SNMSNLQMLFLADNSLTLKLSHDWVPAFQ--LKWLSLASCKMGPHFPNWLQTQNQLISLD 471
            N S L ++ L  N+ +  +  +     +  L+ L L   ++   FP WL     L +LD
Sbjct: 280 CNTS-LTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLD 338

Query: 472 ISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP-DLSVLKSDDIVIDISSNNFDGPI 530
           +S    S  IP    +L   L  L L+NN ++G++P ++    S D V+D   N+  G I
Sbjct: 339 VSGNLFSGEIPPDIGNLK-RLEELKLANNSLTGEIPVEIKQCGSLD-VLDFEGNSLKGQI 396

Query: 531 PPL---PSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT 586
           P           L+L +N FSG +P   +N   L  LNL  N  +G  P  +  L ++  
Sbjct: 397 PEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSE 456

Query: 587 LSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN 646
           L L  NR +G +P S+ N S L  L+L  N   GE+P  V G+L  L  L L   N  G 
Sbjct: 457 LDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASV-GNLFKLTALDLSKQNMSGE 515

Query: 647 IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF-SMMIQEKSSNPIIGLANEILVVPGYIY 705
           +P +L  L  +QV+ L  NN SG +P+ FS+  S+     SSN   G   +       + 
Sbjct: 516 VPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLV 575

Query: 706 YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNL 765
                DN +    GS          ++ L+L SN+L   IP +++ L  L  L+L +NNL
Sbjct: 576 SLSLSDNHI---SGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNL 632

Query: 766 TGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIP------- 818
           +G IPP+I Q  SL+ L L  NH SG IP S S LS L+ +DLS N+L+G+IP       
Sbjct: 633 SGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALIS 692

Query: 819 --------------------LGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRD 858
                               LG+++   N S ++GN ELCG PL  +C   ES+ + G+ 
Sbjct: 693 SNLVYFNVSSNNLKGEIPASLGSRIN--NTSEFSGNTELCGKPLNRRC---ESSTAEGKK 747

Query: 859 DDANTV 864
                +
Sbjct: 748 KKRKMI 753

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  209 bits (532), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 197/610 (32%), Positives = 311/610 (50%), Gaps = 31/610 (5%)

Query: 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLAS 300
           TS++ L +S+ +L + ++   + + S  I+ +DL  N L G IP +   + +L+ L L S
Sbjct: 106 TSLQKLVISNTNL-TGAISSEIGDCSELIV-IDLSSNSLVGEIPSSLGKLKNLQELCLNS 163

Query: 301 NELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAN-DITG 359
           N L G IP   G+  SL  L +  N LS  L   +  +S+      LE +    N +++G
Sbjct: 164 NGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKIST------LESIRAGGNSELSG 217

Query: 360 PIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSN 418
            IP+ +G   +LKVL L    ++G++  SL  L KL++LS+     +G I +    N S 
Sbjct: 218 KIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKEL-GNCSE 276

Query: 419 LQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGIS 478
           L  LFL DN L+  L  +      L+ + L    +    P  +     L ++D+S    S
Sbjct: 277 LINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFS 336

Query: 479 DTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP----LP 534
            TIP  F +LS  L  L LS+N+I+G +P +    +  +   I +N   G IPP    L 
Sbjct: 337 GTIPKSFGNLS-NLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLK 395

Query: 535 SNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR 593
             + FL   +NK  G +PD      +L  L+L+ N  +G +P  +  L N+  L L +N 
Sbjct: 396 ELNIFLGW-QNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNA 454

Query: 594 LNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCH 653
           ++G +P  + NC+ L  L L  N + GE+P  +G  LQNL  L L  NN  G +P ++ +
Sbjct: 455 ISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIG-FLQNLSFLDLSENNLSGPVPLEISN 513

Query: 654 LAFIQVLDLSLNNISGKIPKCFSNFS-MMIQEKSSNPIIGLANEILVVPGYIYYFRYLDN 712
              +Q+L+LS N + G +P   S+ + + + + SSN + G       +P  + +   L+ 
Sbjct: 514 CRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTG------KIPDSLGHLISLNR 567

Query: 713 VLLTWKGSEHEYKSTLGF---VKYLDLSSNKLCEAIPEEITDLVGL-TALNLSRNNLTGL 768
           ++L+      E  S+LG    ++ LDLSSN +   IPEE+ D+  L  ALNLS N+L G 
Sbjct: 568 LILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGF 627

Query: 769 IPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNA 828
           IP +I  L  L  LD+S N  SG++ S+LS L  L  L++S+N  SG +P     +    
Sbjct: 628 IPERISALNRLSVLDISHNMLSGDL-SALSGLENLVSLNISHNRFSGYLPDSKVFRQLIG 686

Query: 829 SVYAGNLELC 838
           +   GN  LC
Sbjct: 687 AEMEGNNGLC 696

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	927
225464712	1021	PREDICTED: receptor-like protein 12-like	0.960	0.871	0.472	0.0
359490572	975	PREDICTED: probable LRR receptor-like se	0.943	0.897	0.471	0.0
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.954	0.864	0.463	0.0
224105895	963	predicted protein [Populus trichocarpa]	0.956	0.921	0.475	0.0
147807651	971	hypothetical protein VITISV_018647 [Viti	0.937	0.894	0.452	0.0
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.911	0.869	0.448	0.0
225462661	1485	PREDICTED: LRR receptor-like serine/thre	0.915	0.571	0.459	0.0
359490560	1010	PREDICTED: LRR receptor-like serine/thre	0.962	0.883	0.429	0.0
224116866	994	predicted protein [Populus trichocarpa]	0.944	0.881	0.457	0.0
224125666	938	predicted protein [Populus trichocarpa]	0.918	0.907	0.458	0.0

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/996 (47%), Positives = 607/996 (60%), Gaps = 106/996 (10%)

Query: 16   SVILFQLEPRLGASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGV 75
            +++L   +P LG+      C+++ER+ALL FKQ LVD++G+LSSWG+E+ +RDCCKWRGV
Sbjct: 38   TLLLLCSKPGLGSG-----CVEKERQALLDFKQGLVDDFGILSSWGNEEDRRDCCKWRGV 92

Query: 76   RCSNTTGHVKVLNLQTSDHEFARR-KFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEF 134
            +CSN T HV +L+L     +   + + L+G+IS +LL+L+ L HLDLS NDF GS VPEF
Sbjct: 93   QCSNRTSHVIMLDLHALPTDTVHKYQSLRGRISSSLLELQHLNHLDLSLNDFQGSYVPEF 152

Query: 135  IGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLD 194
            IG  SKLRYLNLS    +  IP    +LS   + ++  +   S  +LE LS LSSLRHLD
Sbjct: 153  IGLFSKLRYLNLSEARLAGMIPSHLGNLSNLHFLDLSRNYGMSSETLEWLSRLSSLRHLD 212

Query: 195  LSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPI-NPSFIWLFNLSTSIETLDLSDNHL 253
            LS +NL K+  W  V+++L SL  L+L    LP I  PS +   N S S+  LDLS N L
Sbjct: 213  LSGLNLDKAIYWEHVINRLPSLTDLLLHDSALPQIITPSALSYTNSSKSLVVLDLSWNFL 272

Query: 254  PSSSVYPWLFNLSRNILHLDLGFN------------------------------------ 277
             SSSVYPWLFNLS +++HLDL  N                                    
Sbjct: 273  -SSSVYPWLFNLSSSLVHLDLSINQIQGLIPDTFGEMVSLEYLDLFFNQLEGEIPQSLTS 331

Query: 278  -----------HLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNK 326
                       HL GSIP+ F HM SL  L L+ N+LEGGIPK F N+CSL  + L  N 
Sbjct: 332  TSLVHLDLSVNHLHGSIPDTFGHMTSLSYLDLSLNQLEGGIPKSFKNLCSLQMVMLLSNS 391

Query: 327  LSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINK 386
            L+ QL E +QN S  C+ ++LE L L  N  TG  P+   F  L  L +  N LNGT  +
Sbjct: 392  LTAQLPEFVQN-SLSCSKDTLEVLVLSWNQFTGSFPNFTGFSVLGHLYIDHNRLNGTFPE 450

Query: 387  SLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWL 446
             +  L +LE L + GNS  G I+E   S++S L  L L+ NSL L+LS +W P FQ+ +L
Sbjct: 451  HIGQLSQLEVLEISGNSLHGNITEAHLSSLSKLYWLDLSSNSLALELSPEWTPPFQVGYL 510

Query: 447  SLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKL 506
             L SCKMGP+FP WLQTQ  L SLDISN  ISD IP WFW+L+ +L  L ++NN I G++
Sbjct: 511  GLLSCKMGPNFPGWLQTQKDLFSLDISNSSISDVIPSWFWNLTSKLIKLRIANNQIRGRV 570

Query: 507  PDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG----------------- 549
            P L +  +   VID+S N F+GPIP LPS    L+LSKN FSG                 
Sbjct: 571  PSLRMETA--AVIDLSLNRFEGPIPSLPSGVRVLSLSKNLFSGSISLLCTIVDGALSYLD 628

Query: 550  ---------LPDCWLNF-NSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
                     LPDCW  + + L ILNLANN FSGK+P S+G L  +QTL L NN   GELP
Sbjct: 629  LSDNLLSGALPDCWQQWRDQLQILNLANNNFSGKLPYSLGSLAALQTLHLYNNGFLGELP 688

Query: 600  SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQV 659
            SSL NC+KLR++D+ KN   GE+PT +G  L +L++L L+SN FHG+I   +C L  +Q+
Sbjct: 689  SSLMNCTKLRLVDMGKNRFSGEIPTWIGERLSDLVVLSLRSNEFHGSISSDICLLKELQI 748

Query: 660  LDLSLNNISGKIPKCFSNFSMMIQEKSSNPI----IGLA------NEILVVPGYIY---- 705
            LD S NNISG IP+C +NF+ M Q+   + I    + L+      N + + P + Y    
Sbjct: 749  LDFSRNNISGTIPRCLNNFTAMAQKMIYSVIAHDYLALSIVPRGRNNLGITPRWAYSSGS 808

Query: 706  ---YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSR 762
                 RY+D+ L+ WKG E EYK+ LG V+ +DLSSNKL   IP+EIT L+ L +LNLSR
Sbjct: 809  FDTIARYVDSALIPWKGGEFEYKNILGLVRSIDLSSNKLSGEIPKEITKLMELISLNLSR 868

Query: 763  NNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQ 822
            N+L G IP  IGQLKSLD LDLS+N   G IPSSLS +  LSVLDLS N+LSG+IP GTQ
Sbjct: 869  NHLNGQIPSMIGQLKSLDVLDLSKNQLDGKIPSSLSQIDRLSVLDLSSNNLSGQIPSGTQ 928

Query: 823  LQSFNASVYAGNLELCGLPLPNKCA-DEESTPSPGRDDDANTVEDEDNQFITLGFYVSLT 881
            LQ F AS Y GN ELCG PL  KC  DE +  SP  D + + ++D++       FYVS+ 
Sbjct: 929  LQGFEASSYMGNPELCGSPLKTKCQEDETAQTSPTSDGNEDDLQDDE---FDPWFYVSIA 985

Query: 882  LGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLY 917
            LGF VGFWGV GTL+L  SW   Y+ FL  +KDW +
Sbjct: 986  LGFLVGFWGVWGTLVLKSSWSEAYFRFLNKIKDWFF 1021

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/961 (47%), Positives = 599/961 (62%), Gaps = 86/961 (8%)

Query: 17  VILFQLEPRLGASNNI----TRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKW 72
           V+L   +P LG+   +      CI+ ER+ALL FK+ + D++G+LSSW SE  KRDCCKW
Sbjct: 14  VLLLCSKPDLGSCIQVGDAKVGCIERERQALLKFKEDIADDFGILSSWRSEKNKRDCCKW 73

Query: 73  RGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVP 132
           RGV+CS+ TGH+  L+L   +++   R  L+GKISP+LL+L+ L HLDLS NDF G  +P
Sbjct: 74  RGVQCSSQTGHITSLDLSAYEYKDEFRH-LRGKISPSLLELQQLNHLDLSGNDFEGRSMP 132

Query: 133 EFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRH 192
           EFIGSL+K+RYL+LS    +  +PH   +LS   + ++  ++  S  +L+ LS LSSL H
Sbjct: 133 EFIGSLTKMRYLDLSSTYLAGPLPHQLGNLSNLNFLDLSGNSNMSSENLDWLSRLSSLTH 192

Query: 193 LDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLP-PINPSFIWLFNLSTSIETLDLSDN 251
           L L+ +NL+K+  W   +++L SL  L+L+SC LP PI PS   L   S S+  LDLS N
Sbjct: 193 LGLNHLNLSKAIRWADAINKLPSLIDLLLKSCDLPSPITPSLS-LVTSSMSLAVLDLSCN 251

Query: 252 HLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLR----------------- 294
            L S+S+YPWLFN + +++HLDL +NHLQ S P+AF +MVSL                  
Sbjct: 252 QL-STSIYPWLFNFNSSLVHLDLSYNHLQASPPDAFGNMVSLEYLDLSWNQLKGEIPKSF 310

Query: 295 -----LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSS--------- 340
                 L L++N+L+G IP  FGNM SL  + L RN+L G++ +   NL +         
Sbjct: 311 SSSLVFLDLSNNQLQGSIPDTFGNMTSLRTVNLTRNQLEGEIPKSFNNLCNLQILKLHRN 370

Query: 341 -----------GCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLS 389
                       C  ++LE L L  N   G +PDL  F SL  L LG N LNGT+ +S++
Sbjct: 371 NLAGVLVKNLLACANDTLEILDLSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIA 430

Query: 390 HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS-LTLKLSHDWVPAFQLKWLSL 448
            L +LE L +  NS  G +SE    ++S LQ L L+ NS LTL LS DWVP FQL  + L
Sbjct: 431 QLAQLELLKIPSNSLQGTVSEAHLFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQLTHIFL 490

Query: 449 ASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPD 508
           ASCK+GP FP WL+TQ  +  LDIS  GISD IP+WFW+ +  L  LN+SNN I+G +P+
Sbjct: 491 ASCKLGPRFPGWLRTQKGVGWLDISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPN 550

Query: 509 LSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG------------------- 549
            S+  S    +D+SSN F+G IP     + +L+LSKN FSG                   
Sbjct: 551 ASIEFSRFPQMDMSSNYFEGSIPVFIFYAGWLDLSKNMFSGSISSLCAVSRGASAYLDLS 610

Query: 550 -------LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSL 602
                  LP+CW  +  L +LNL NN FSGKI DS+G L  I++L LRNN+L GELP SL
Sbjct: 611 NNLLSGELPNCWAQWEGLVVLNLENNNFSGKIQDSIGSLEAIESLHLRNNKLTGELPLSL 670

Query: 603 KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDL 662
           KNC+KLRV+DL +N L G +P+ +G SL NL++L L+ N F+G+IP  +C L  IQ+LDL
Sbjct: 671 KNCTKLRVIDLGRNKLCGNIPSWIGRSLPNLVVLNLRFNEFYGSIPMDMCQLKKIQILDL 730

Query: 663 SLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEH 722
           S NNISG IP+CF+NF+ M+Q+ S   +I     I           Y+D  ++ WKG E 
Sbjct: 731 SNNNISGMIPRCFNNFTAMVQQGSL--VITYNYTIPCFKPLSRPSSYVDKQMVQWKGREL 788

Query: 723 EYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFL 782
           EY+ TLG +K +DLSSN+L   IP E+T+L+ L +LNLSRN LTGLIPP IGQLK++D L
Sbjct: 789 EYEKTLGLLKSIDLSSNELSGEIPREVTNLLDLISLNLSRNFLTGLIPPTIGQLKAMDAL 848

Query: 783 DLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPL 842
           DLS N   G IPS+LS +  LSVLDLS+N   GKIP GTQLQSFN+S Y GN +LCG PL
Sbjct: 849 DLSWNRLFGKIPSNLSQIDRLSVLDLSHNDFWGKIPSGTQLQSFNSSTYEGNPKLCGPPL 908

Query: 843 PNKC-ADEESTPSPGRDDDANTVEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSW 901
             KC  DE    SP  +     V+ E N    L FY+ + LGF VGFWG+CGTL+LN SW
Sbjct: 909 LKKCLEDERGEHSPPNEGH---VQKEAND---LWFYIGVALGFIVGFWGICGTLLLNSSW 962

Query: 902 R 902
           R
Sbjct: 963 R 963

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/1018 (46%), Positives = 603/1018 (59%), Gaps = 133/1018 (13%)

Query: 23   EPRLGASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTG 82
            +P LG    +T CI+ ER+ALL F++ LVD YG+LSSWG  D  RDCC+WRGV+CSN +G
Sbjct: 21   KPGLGK---VTGCIERERQALLHFRRGLVDRYGLLSSWG--DDNRDCCQWRGVQCSNQSG 75

Query: 83   HVKVLNLQTSDHEFARRKF----LKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSL 138
            H+ +L+L    +E   +      L+G+ISP+LL+L  L HLDLS NDF G  +P F+GSL
Sbjct: 76   HIIMLHLPAPPNEDYSQDVIYQSLRGEISPSLLELDHLTHLDLSYNDFEGRHIPPFLGSL 135

Query: 139  SKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCI 198
            S+++YLNLS    +  +P    +LS     ++ ++ L + G+LE LS LSSLRHLDLS +
Sbjct: 136  SRMQYLNLSHANFAQTVPTQLGNLSNLLSLDLSDNYLLNSGNLEWLSRLSSLRHLDLSSV 195

Query: 199  NLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLF---NLSTSIETLDLSDNHLPS 255
            NL+++  W Q +++L SL  L L+ CYLPPI P  I      N S  +  LDLS N+L +
Sbjct: 196  NLSEAIHWSQAINKLPSLIHLDLQHCYLPPIPPLTIPSLSHGNSSVPLVFLDLSGNYL-T 254

Query: 256  SSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLLSLAS-------------- 300
            SS+YPWL N S  +LHLDL FN L GSIPE AF +M SL  L L S              
Sbjct: 255  SSIYPWLLNFSTTLLHLDLSFNGLNGSIPEYAFGNMSSLEYLDLHSSELDDEIPDTIGDM 314

Query: 301  ----------------------------------NELEGGIPKFFGNMCSLNQLYLPRNK 326
                                              N+L+G IP   GNM SL +L L  N 
Sbjct: 315  GSLAYLDISENQLWGSIPDTVGKMVLLSHLDLSLNQLQGSIPDTVGNMVSLKKLSLSENH 374

Query: 327  LSGQLSELIQNLSS--------------------GCTVNSLEGLCLYANDITGPIPDLGR 366
            L G++ + + NL +                     C  ++LE L L  N  +G +P L  
Sbjct: 375  LQGEIPKSLSNLCNLQELELDRNNLSGQLAPDFVACANDTLETLFLSDNQFSGSVPALIG 434

Query: 367  FLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD 426
            F SL+ L L  N LNGT+ +S+  L  L++L +  NS  G ISE    N+S L  L L+ 
Sbjct: 435  FSSLRELHLDFNQLNGTLPESVGQLANLQSLDIASNSLQGTISEAHLFNLSWLSYLNLSS 494

Query: 427  NSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFW 486
            NSLT  +S DWVP FQL  L LASCK+GP FP+WL+TQNQL  LDISN  ISD +PDWFW
Sbjct: 495  NSLTFNMSLDWVPPFQLLSLRLASCKLGPRFPSWLRTQNQLSELDISNSEISDVLPDWFW 554

Query: 487  DLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNK 546
            +++  +  L++SNN I G LP+LS        ID+SSN F+G IP LP +  +L+LS NK
Sbjct: 555  NVTSTVNTLSISNNRIKGTLPNLSSEFGSFSNIDMSSNCFEGSIPQLPYDVQWLDLSNNK 614

Query: 547  FS-------------------------GLPDCWLNFNSLSILNLANNRFSGKIPDSMGFL 581
             S                         GLP+CW  + SL +LNL NNRFSG+IP S G L
Sbjct: 615  LSGSISLLCTVGTELLLLDLSNNSLSGGLPNCWAQWESLVVLNLENNRFSGQIPISFGSL 674

Query: 582  HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
             +IQTL LRNN L GELP S KNC+ LR +DL KN L G++P  +GGSL NL +L L SN
Sbjct: 675  RSIQTLHLRNNNLTGELPLSFKNCTSLRFIDLAKNRLSGKIPEWIGGSLPNLTVLNLGSN 734

Query: 642  NFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVP 701
             F G I  +LC L  IQ+LDLS NN+ G +P+C   F+ M ++ S          +++V 
Sbjct: 735  RFSGGICPELCQLKNIQILDLSSNNMLGVVPRCVGGFTAMTKKGS----------LVIVH 784

Query: 702  GY-----------IYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEIT 750
             Y           I    Y+D  L+ WKG E EYKSTLG VK +D SSNKL   IPEE+ 
Sbjct: 785  NYSFADFSSKYSLIRNAFYVDRALVKWKGREFEYKSTLGLVKSIDFSSNKLSGEIPEEVI 844

Query: 751  DLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY 810
            DLV L +LNLSRNNLT LIP +IGQLKSL+ LDLS+N   G IP+SL  +S LSVLDLS 
Sbjct: 845  DLVELVSLNLSRNNLTRLIPARIGQLKSLEVLDLSQNQLFGEIPASLVEISDLSVLDLSD 904

Query: 811  NSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKC-ADEESTPSPGRDDDANTVEDEDN 869
            N+LSGKIP GTQLQSFN   Y GN  LCGLPL  KC  D+    SP  + +    +D ++
Sbjct: 905  NNLSGKIPQGTQLQSFNIDSYKGNPALCGLPLLKKCFEDKIKQDSPTHNIEDKIQQDGND 964

Query: 870  QFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAMNKSNL 927
             +    FYVS+ LGF VGFWGVCGTL+LN SWRY Y+ FL  +KDWLY   A+N + L
Sbjct: 965  MW----FYVSVALGFIVGFWGVCGTLLLNNSWRYAYFQFLNKIKDWLYVIIAINMARL 1018

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/941 (47%), Positives = 595/941 (63%), Gaps = 54/941 (5%)

Query: 27  GASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKV 86
           GA+     CI+ ER+ALL FK+ ++DE GVLSSWG E+ KRDCCKWRGV C N TGHV  
Sbjct: 24  GATGGEIGCIERERQALLKFKEDIIDEDGVLSSWGGEEEKRDCCKWRGVGCDNITGHVTS 83

Query: 87  LNLQTS---DHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRY 143
           LNL +S   +H F     L GK+S +LL+L+ L +LDLS N+   S + +FIGSLS LRY
Sbjct: 84  LNLHSSPLYEHHFTP---LTGKVSNSLLELQHLNYLDLSLNNLDES-IMDFIGSLSSLRY 139

Query: 144 LNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKS 203
           LNLS    +  IP+  R+LS  +  ++  S   SV +L  LSHLSSL HLDLS  +L+K 
Sbjct: 140 LNLSYNLFTVTIPYHLRNLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLDLSGSDLSKV 199

Query: 204 SDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLF 263
           +DW QVV+ L  LK L L  C L  I PS +   N S  +  L LS+N+L SS++YPWL+
Sbjct: 200 NDWLQVVTNLPRLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLHLSNNNL-SSAIYPWLY 258

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
           NLS ++  LDL  N LQG +P+ F+ M +L  L L+ N+LEGGIP+  G MCSL+ L L 
Sbjct: 259 NLSNSLADLDLSGNQLQGLVPDGFRKMSALTNLVLSRNQLEGGIPRSLGEMCSLHTLDLC 318

Query: 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT 383
            N L+G+LS+L +NL  G T +SLE L L  N + G + D+ RF SL+ L +  N LNG+
Sbjct: 319 HNNLTGELSDLTRNLY-GRTESSLEILRLCQNQLRGSLTDIARFSSLRELDISNNQLNGS 377

Query: 384 INKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQL 443
           I +S+  L KL+   +  NS  G++S   FSN+S L+ L L+ NSL L+   DW PAFQL
Sbjct: 378 IPESIGFLSKLDYFDVSFNSLQGLVSGGHFSNLSKLKHLDLSYNSLVLRFKSDWDPAFQL 437

Query: 444 KWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS 503
           K + L+SC +GP FP WL+TQ ++  LDIS+  ISDT+P+WFW+L  +L FLN+S+N + 
Sbjct: 438 KNIHLSSCHLGPCFPKWLRTQIKVRLLDISSASISDTVPNWFWNLLPKLAFLNISHNLMR 497

Query: 504 GKLPDLSVLKSDDIV---IDISSNNFDGPIPPLPSNSTFLNLSKNKFSG----------- 549
           G LPD S + + D      D+S N F+G +P  P N+  L LS N FSG           
Sbjct: 498 GTLPDFSSVDAVDDTFPGFDLSFNRFEGLLPAFPFNTASLILSNNLFSGPISLICNIVGK 557

Query: 550 ---------------LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL 594
                          LP+C++N+++L +LNLANN  SG+IP S+G L ++QTLSL  N L
Sbjct: 558 DLSFLDLSNNLLTGQLPNCFMNWSTLVVLNLANNNLSGEIPSSVGSLFSLQTLSLNKNSL 617

Query: 595 NGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHL 654
            GELP SLKNCS L+ LDL +N L GE+P  +G SL +L+ L LKSN F G+IP  LC L
Sbjct: 618 YGELPMSLKNCSMLKFLDLSRNQLSGEIPAWIGESLSSLMFLSLKSNEFIGSIPLHLCQL 677

Query: 655 AFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFR-YLDNV 713
             +++LDLS N ISG IPKC +N + M+ +  +  II       +  G I+  R Y++  
Sbjct: 678 TNLRILDLSQNTISGAIPKCLNNLTTMVLKGEAETIIDNLYLTSMRCGAIFSGRYYINKA 737

Query: 714 LLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI 773
            + WKG ++EY+  LG ++ +D + N L   IPEEIT L+GL ALNLSRNNLTG+IP  I
Sbjct: 738 WVGWKGRDYEYERYLGLLRVIDFAGNNLSGEIPEEITGLLGLVALNLSRNNLTGVIPQTI 797

Query: 774 GQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAG 833
           G LKSL+ LDLS N FSG IP ++  L+ LS L++SYN+LSG+IP  TQLQSF+AS + G
Sbjct: 798 GLLKSLESLDLSGNQFSGAIPVTMGDLNFLSYLNVSYNNLSGQIPSSTQLQSFDASAFIG 857

Query: 834 NLELCGLPLPNKCADEESTPSPGRDDDANTVED---EDNQ----FITLGFYVSLTLGFFV 886
           N  LCGLP+ NKC         G D   N V +   +DNQ      +  F  ++ +GF V
Sbjct: 858 NPALCGLPVTNKCL--------GGDLPRNLVMNGVIQDNQETVHEFSAWFCTAMGIGFSV 909

Query: 887 GFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAMNKSNL 927
            FWGV G L+L RSWR+ Y+ FL    DWLY   A+ K+ L
Sbjct: 910 FFWGVSGALLLIRSWRHAYFRFLDESWDWLYVKVAVRKARL 950

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807651|emb|CAN64389.1| hypothetical protein VITISV_018647 [Vitis vinifera]

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/986 (45%), Positives = 583/986 (59%), Gaps = 117/986 (11%)

Query: 17  VILFQLEPRLGASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVR 76
           ++L   E  L   +    CI+ ER+ALL FKQ +VD+YG+LSSWG+ + KRDCCKWRGV 
Sbjct: 14  LLLLCFEACLRVGDAKVGCIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDCCKWRGVE 73

Query: 77  CSNTTGHVKVLNLQTSDH-EFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFI 135
           C+N TGHV +L+L T         + L GKI P+L +L+ L+HL+LS N F G  +P  +
Sbjct: 74  CNNQTGHVIMLDLHTPPPVGIGYFQSLGGKIGPSLAELQHLKHLNLSWNQFEG-ILPTQL 132

Query: 136 GSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDL 195
           G+LS L+ L+L          H + D+S               G+L+ LS L  L HLDL
Sbjct: 133 GNLSNLQSLDLG---------HNYGDMS--------------CGNLDWLSDLPLLTHLDL 169

Query: 196 SCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSF-IWLFNLSTSIETLDLSDNHLP 254
           S +NL+K+  W Q ++++ SL  L L    LPPI P+  I   N STS+  LDLS N L 
Sbjct: 170 SGVNLSKAIHWPQAINKMPSLTELYLSDTQLPPIIPTISISHINSSTSLAVLDLSRNGL- 228

Query: 255 SSSVYPWLF---------------------------------NLSRNIL----------- 270
           +SS+YPWLF                                 +LS N L           
Sbjct: 229 TSSIYPWLFCFNSVLVHLDLCMNDLNCSILDAFGNMTTLAYLDLSLNELRGSIPDAFGNM 288

Query: 271 ----HLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNK 326
               HLDL  NHL GSIP+AF +M SL  L L+SN+LEG IPK   ++C+L +L+L RN 
Sbjct: 289 TTLAHLDLHSNHLNGSIPDAFGNMTSLAYLDLSSNQLEGEIPKSLTDLCNLQELWLSRNN 348

Query: 327 LSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINK 386
           L+G    L +     C+ ++LE L L  N   G  PDL  F  L+ L LG N LNGT+ +
Sbjct: 349 LTG----LKEKDFLACSNHTLEVLGLSYNQFKGSFPDLSGFSQLRELSLGFNQLNGTLPE 404

Query: 387 SLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWL 446
           S+  L +L+ LS+  NS  G +S      +SNL  L L+ NSLT  +S + VP F+   +
Sbjct: 405 SIGQLAQLQVLSIPSNSLRGTVSANHLFGLSNLINLDLSFNSLTFNISLEQVPQFRASRI 464

Query: 447 SLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKL 506
            LASCK+GP FPNWLQTQ  L  LDIS  GISD IP+WFW+L+ +  +LN+SNNHISG L
Sbjct: 465 MLASCKLGPRFPNWLQTQEVLRELDISASGISDAIPNWFWNLTSDFKWLNISNNHISGTL 524

Query: 507 PDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG----------------- 549
           P+L   ++  +++D+SSN  +G IP    N+ +L+LSKN FSG                 
Sbjct: 525 PNL---QATPLMLDMSSNCLEGSIPQSVFNAGWLDLSKNLFSGSISLSCGTTNQPSWGLS 581

Query: 550 ------------LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE 597
                       L +CW  +  L +LNLANN FSGKI DS+G L  +QTL LRNN   G 
Sbjct: 582 HLDLSNNRLSGELSNCWERWKYLFVLNLANNNFSGKIKDSIGLLDQMQTLHLRNNSFTGA 641

Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFI 657
           LPSSLKNC  LR++DL KN L G++   +GGSL +LI+L L+SN F+G+IP  LC L  I
Sbjct: 642 LPSSLKNCRALRLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQI 701

Query: 658 QVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTW 717
           Q+LDLS NN+SGKIPKC  N + M Q++S      L  +        +Y  Y+D+ L+ W
Sbjct: 702 QMLDLSSNNLSGKIPKCLKNLTAMAQKRSQ----VLFYDTWYDASNPHY--YVDSTLVQW 755

Query: 718 KGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK 777
           KG E EYK TLG +K +D SSNKL   IP E+TDLV L +LNLS NNL G IP  IGQLK
Sbjct: 756 KGKEQEYKKTLGLIKSIDFSSNKLIGEIPIEVTDLVELVSLNLSSNNLIGSIPTTIGQLK 815

Query: 778 SLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLEL 837
            LD LDLS+N  +G IP +LS ++ LSVLDLS N+L GKIPLGTQLQSF+AS Y GN  L
Sbjct: 816 LLDVLDLSQNQLNGRIPDTLSQIADLSVLDLSNNTLLGKIPLGTQLQSFDASTYEGNPGL 875

Query: 838 CGLPLPNKCADEESTPSPGRDDDANTVEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLML 897
           CG PL  +C ++E          ++  ED  +    + FY ++ LGF +GFWGVCGTL+ 
Sbjct: 876 CGPPLLKRCPEDELGGVSFISGLSSKKEDIQDDANNIWFYGNIVLGFIIGFWGVCGTLLF 935

Query: 898 NRSWRYGYYNFLTGMKDWLYAAAAMN 923
           N SWRY Y+  L+ +KDWLY    +N
Sbjct: 936 NSSWRYAYFQLLSKIKDWLYVTTIVN 961

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/972 (44%), Positives = 576/972 (59%), Gaps = 127/972 (13%)

Query: 35  CIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDH 94
           C + ER+ALL FKQ +VD+ GVLSSWG+ + KRDCCKWRGV+C+N TGHV  L+L     
Sbjct: 35  CRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCCKWRGVKCNNQTGHVIRLDLHA--- 91

Query: 95  EFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSP-----VPEFIGSLSKLRYLNLSCG 149
                + L GKI P+L +L+ L+HL+LS NDF   P     +P  +G+LS L+ L+L   
Sbjct: 92  -----QSLGGKIGPSLAELQHLKHLNLSSNDFEAFPNFTGILPTQLGNLSNLQSLDL--- 143

Query: 150 TPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQV 209
                         G+ Y ++      + G+L+ L HL  L HLDLS +NL+K+  W Q 
Sbjct: 144 --------------GYNYGDM------TCGNLDWLCHLPFLTHLDLSWVNLSKAIHWPQA 183

Query: 210 VSQLHSLKTLVLRSCYLPPINPSF-IWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRN 268
           ++++ SL  L L    LP I P+  I   N STS+  L L  N L +SS+YPWLFN S +
Sbjct: 184 INKMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGL-TSSIYPWLFNFSSS 242

Query: 269 ILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLS 328
           ++HLDL +N L GS P+AF +M +L  L L+SNEL G IP  FGNM +L  L L  NKL 
Sbjct: 243 LVHLDLSWNDLNGSTPDAFGNMTTLAYLDLSSNELRGSIPDAFGNMTTLAYLDLSWNKLR 302

Query: 329 GQLSELIQNLSS--------------------------------------------GCTV 344
           G + +   N++S                                             C  
Sbjct: 303 GSIPDAFGNMTSLAYLDLSLNELEGEIPKSLTDLCNLQELWLSQNNLTGLKEKDYLACPN 362

Query: 345 NSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
           N+LE L L  N + G  P+L  F  L+ L L  N L GT+++S+  L +L+ LS+  NS 
Sbjct: 363 NTLEVLDLSYNQLKGSFPNLSGFSQLRELFLDFNQLKGTLHESIGQLAQLQLLSIPSNSL 422

Query: 405 TGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQ 464
            G +S      +SNL  L L+ NSLT  +S + VP F+   + LASCK+GP FPNWLQTQ
Sbjct: 423 RGTVSANHLFGLSNLSYLDLSFNSLTFNISLEQVPQFRASSILLASCKLGPRFPNWLQTQ 482

Query: 465 NQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSN 524
             L  LDIS  GISD IP+WFW+L+ +L +LN+SNNHISG LP+L       + +D+SSN
Sbjct: 483 EVLSELDISASGISDVIPNWFWNLTSDLNWLNISNNHISGTLPNLQARSY--LGMDMSSN 540

Query: 525 NFDGPIPPLPSNSTFLNLSKNKFSG-----------------------------LPDCWL 555
             +G IP    N+ +L+LSKN FSG                             LP+CW 
Sbjct: 541 CLEGSIPQSVFNARWLDLSKNLFSGSISLSCGTPNQPSWGLSHLDLSNNRLSGELPNCWE 600

Query: 556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615
            +  L +L+LANN FSGKI +S+G LH +QTL L NN   G LPSSLKNC  LR++DL K
Sbjct: 601 QWKDLIVLDLANNNFSGKIKNSIGLLHQMQTLHLCNNSFTGALPSSLKNCRALRLIDLGK 660

Query: 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF 675
           N L G++   +GGSL +LI+L L+SN F+G+IP  LC L  IQ+LDLS NN+SGKIPKC 
Sbjct: 661 NKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQMLDLSSNNLSGKIPKCL 720

Query: 676 SNFSMMIQEKSSNPIIGLANEI-LVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYL 734
            N + M Q+ S  P++       L +P     + Y+D+ L+ WKG E EYK TL F+K +
Sbjct: 721 KNLTAMAQKGS--PVLSYETIYNLSIP-----YHYVDSTLVQWKGKEQEYKKTLRFIKSI 773

Query: 735 DLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIP 794
           D S N+L   IP E+TDLV L +LNLSRNNL G IP  IGQLK LD LDLS+N  +G IP
Sbjct: 774 DFSRNQLIGEIPIEVTDLVELVSLNLSRNNLIGSIPTTIGQLKLLDVLDLSQNQLNGRIP 833

Query: 795 SSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEE---S 851
            +LS ++ LSVLDLS N+LSGKIPLGTQLQSF+AS Y GN  LCG PL  +C ++E    
Sbjct: 834 DTLSQIADLSVLDLSNNTLSGKIPLGTQLQSFDASTYEGNPGLCGPPLLIRCPEDELGGV 893

Query: 852 TPSPGRDDDANTVEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTG 911
           + + G       ++D+ N    + FY ++ LGF +GFWGVCGTL+ N SWRY Y+  L+ 
Sbjct: 894 SFTSGLSSKKEDIQDDAN---NIWFYGNIVLGFIIGFWGVCGTLLFNSSWRYAYFQLLSK 950

Query: 912 MKDWLYAAAAMN 923
           +KDWLY    +N
Sbjct: 951 IKDWLYMTTIVN 962

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462661|ref|XP_002266475.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/968 (45%), Positives = 579/968 (59%), Gaps = 119/968 (12%)

Query: 35  CIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDH 94
           CI+ ER+ALL FKQ +VD+YG+LSSWG+ + KRDCCKWRGV C+N TGHV +L+L     
Sbjct: 36  CIERERQALLHFKQGVVDDYGMLSSWGNGEDKRDCCKWRGVECNNQTGHVIMLDLSGG-- 93

Query: 95  EFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPV-PEFIGSLSKLRYLNLSCGTPSS 153
                 +L GKI P+L KL+ L+HL+LS NDF  + + P  +G+LS L+ L+L       
Sbjct: 94  ------YLGGKIGPSLAKLQHLKHLNLSWNDFEVTGILPTQLGNLSNLQSLDLRYN---- 143

Query: 154 KIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQL 213
                 RD+              + G+L+ LSHL  L HLDLS +NL+K+  W Q V ++
Sbjct: 144 ------RDM--------------TCGNLDWLSHLHLLTHLDLSFVNLSKAIHWPQAVKKM 183

Query: 214 HSLKTLVLRSCYLPPINPSF-IWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHL 272
            +L  L L +  LPPI+P+  I   N STS+  L+L +N L +SS+YPWL N S  ++HL
Sbjct: 184 PALTELYLSNTQLPPIDPTISISHINSSTSLAVLELFENDL-TSSIYPWLLNFSSCLVHL 242

Query: 273 DLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPK----------------------F 310
           DL  NHL GSIP+AF +M +L  L L+ N+LEG IPK                       
Sbjct: 243 DLSNNHLNGSIPDAFGNMTTLAYLDLSFNQLEGEIPKSFSINLVTLDLSWNHLHGSIPDA 302

Query: 311 FGNMCSLNQLYLPRNKLSGQLSELIQNLSS--------------------GCTVNSLEGL 350
           FGNM +L  L+   N+L G++ + ++ L                       C+ N+LE L
Sbjct: 303 FGNMATLAYLHFSGNQLEGEIPKSLRGLCDLQILSLSQNNLTGLLEKDFLACSNNTLEVL 362

Query: 351 CLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISE 410
            L  N   G  PDL  F  L+ L L  N LNGT+ +S+  L +L+ LSL  NS  G +S 
Sbjct: 363 DLSHNQFKGSFPDLSGFSQLRELHLEFNQLNGTLPESIGQLAQLQVLSLRSNSLRGTVSA 422

Query: 411 TFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISL 470
                +S L  L L+ NSLT+ +S + VP FQ   + LASCK+GPHFPNWL+TQ  L  L
Sbjct: 423 NHLFGLSKLWDLDLSFNSLTVNISLEQVPQFQAIEIKLASCKLGPHFPNWLRTQKHLSML 482

Query: 471 DISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPI 530
           DIS  GI++ +P+WFW  +  L + N+SNNHISG LP+L+   S  + +DISSN  +G I
Sbjct: 483 DISASGIANVLPNWFWKFTSHLSWFNISNNHISGTLPNLTSHLS-YLGMDISSNCLEGSI 541

Query: 531 PPLPSNSTFLNLSKNKFSG-----------------------------LPDCWLNFNSLS 561
           P    N+ +L+LSKN FSG                             LP C   +  L 
Sbjct: 542 PQSLFNAQWLDLSKNMFSGSISLSCGTTNQSSWGLSHLDLSNNRLSGELPKCREQWKDLI 601

Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621
           +LNLANN FSGKI +S+G  +++QTL LRNN L G LP SLKNC  LR+LDL KN L G+
Sbjct: 602 VLNLANNNFSGKIKNSIGLSYHMQTLHLRNNSLTGALPWSLKNCRDLRLLDLGKNKLSGK 661

Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
           +P  +GGSL NLI++ L+SN F+G+IP  LC L  I +LDLS NN+SG IPKC +N S M
Sbjct: 662 IPGWIGGSLSNLIVVNLRSNEFNGSIPLNLCQLKKIHMLDLSSNNLSGTIPKCLNNLSGM 721

Query: 682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL 741
            Q  S   +I    ++L +    YY    DN L+ WKG E EY  TLG VK +D S+NKL
Sbjct: 722 AQNGS--LVITYEEDLLFLMSLSYY----DNTLVQWKGKELEYNKTLGLVKSIDFSNNKL 775

Query: 742 CEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLS 801
              IP E+TDLV L +LNLSRN L G IP  IGQLKSLD LDLSRN   G IP SLS ++
Sbjct: 776 IGEIPTEVTDLVELVSLNLSRNYLIGPIPLMIGQLKSLDSLDLSRNRLHGGIPISLSQIA 835

Query: 802 GLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPS--PGRDD 859
            LSVLDLS N LSGKIP GTQLQSFNAS Y GN  LCG PL  KC ++E+      G  +
Sbjct: 836 RLSVLDLSDNILSGKIPSGTQLQSFNASTYDGNPGLCGPPLLKKCQEDENREVSFTGLSN 895

Query: 860 DANTVEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAA 919
           + +  +D +N    + FY ++ LGF +GFWGVCGTL+LN SWRY Y+ FL+ +KDWLY  
Sbjct: 896 EEDIQDDANN----IWFYGNIVLGFIIGFWGVCGTLLLNSSWRYAYFQFLSKIKDWLYVT 951

Query: 920 AAMNKSNL 927
             +  S+L
Sbjct: 952 TTICMSDL 959

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490560|ref|XP_002266431.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/1030 (42%), Positives = 588/1030 (57%), Gaps = 138/1030 (13%)

Query: 8    LLEYLALSSVILFQLEPRLGAS----NNITRCIDEEREALLTFKQSLVDEYGVLSSWGSE 63
            L ++   S ++L   +  LG+S    +    C++ ER+ALL FKQ +VD +G LSSWG+ 
Sbjct: 5    LFQHFLGSFLLLLCFKAGLGSSFMLGDAKVGCMERERQALLHFKQGVVDHFGTLSSWGNG 64

Query: 64   DGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHE-FARRKFLKGKIS---PALLKLRGLRHL 119
            +G+ DCCKWRGV C N TGHV +L+L  + H+     + L G+IS   P+L +L+ L+HL
Sbjct: 65   EGETDCCKWRGVECDNQTGHVIMLDLHGTGHDGMGDFQILGGRISQLGPSLSELQHLKHL 124

Query: 120  DLSKNDFGGSPV----PEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL 175
            +LS N F  S +    P F G L                 P    +LS  +  ++ ++  
Sbjct: 125  NLSFNLFEVSHIILSFPYFTGVL-----------------PTQLGNLSNLQSLDLSDNFE 167

Query: 176  FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHS-LKTLVLRSCYLPPINPSF- 233
             S  +LE LS+L SL HLDLS ++L+K+  W Q ++++ S L  L L    LP I P+  
Sbjct: 168  MSCENLEWLSYLPSLTHLDLSGVDLSKAIHWPQAINKMSSSLTELYLSFTKLPWIIPTIS 227

Query: 234  IWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDL------------------- 274
            I   N STS+  LDLS N L +SS+ PWLF  S +++HLDL                   
Sbjct: 228  ISHTNSSTSLAVLDLSLNGL-TSSINPWLFYFSSSLVHLDLFGNDLNGSILDALGNMTNL 286

Query: 275  ---------------------------GFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI 307
                                        +N L GSIP+AF +M +L  L L+SN L G I
Sbjct: 287  AYLDLSLNQLEGEIPKSFSISLAHLDLSWNQLHGSIPDAFGNMTTLAYLDLSSNHLNGSI 346

Query: 308  PKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSS--------------------GCTVNSL 347
            P   GNM +L  LYL  N+L G++ + +++L +                     C+ N+L
Sbjct: 347  PDALGNMTTLAHLYLSANQLEGEIPKSLRDLCNLQILLLSQNNLSGLLEKDFLACSNNTL 406

Query: 348  EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGV 407
            E L L  N   G  PDL  F  L+ L LG N LNGT+ +S+  L +L+ L++  NS  G 
Sbjct: 407  ESLYLSENQFKGSFPDLSGFSQLRELYLGFNQLNGTLPESIGQLAQLQGLNIRSNSLQGT 466

Query: 408  ISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQL 467
            +S      +S L  L L+ N LT+ +S + VP FQ + + LASCK+GP FPNWLQTQ +L
Sbjct: 467  VSANHLFGLSKLWDLDLSFNYLTVNISLEQVPQFQAQEIKLASCKLGPRFPNWLQTQKRL 526

Query: 468  ISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFD 527
              LDIS  GISD IP+WFW+L+  L +LN+SNNHISG LP+L    S  + +D+SSN   
Sbjct: 527  QELDISASGISDVIPNWFWNLTSNLVWLNISNNHISGTLPNLEATPS--LGMDMSSNCLK 584

Query: 528  GPIPPLPSNSTFLNLSKNKFSG-----------------------------LPDCWLNFN 558
            G IP    N  +L+LSKN FSG                             LP CW  + 
Sbjct: 585  GSIPQSVFNGQWLDLSKNMFSGSVSLSCGTTNQSSWGLLHVDLSNNQLSGELPKCWEQWK 644

Query: 559  SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
             L +LNL NN FSG I +S+G LH +QTL LRNN L G LP SLKNC  LR++DL KN L
Sbjct: 645  YLIVLNLTNNNFSGTIKNSIGMLHQMQTLHLRNNSLTGALPLSLKNCRDLRLIDLGKNKL 704

Query: 619  FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF 678
             G++P  +GG+L +LI++ L+SN F+G+IP  LC L  +Q+LDLS NN+SG IPKC +N 
Sbjct: 705  SGKMPAWIGGNLSDLIVVNLRSNEFNGSIPLNLCQLKKVQMLDLSSNNLSGIIPKCLNNL 764

Query: 679  SMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSS 738
            + M Q  S   +I     + V    I    Y+DN ++ WKG E EYK TL  VK +D S+
Sbjct: 765  TAMGQNGS--LVIAYEERLFVFDSSI---SYIDNTVVQWKGKELEYKKTLRLVKSIDFSN 819

Query: 739  NKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLS 798
            NKL   IP E+TDLV L +LNLS+NNL G IP  IGQLKSLDFLDLS+N   G IP SLS
Sbjct: 820  NKLNGEIPIEVTDLVELLSLNLSKNNLIGSIPLMIGQLKSLDFLDLSQNQLHGGIPVSLS 879

Query: 799  LLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTP-SPGR 857
             ++GLSVLDLS N LSGKIP GTQL SFNAS Y GN  LCG PL  KC ++E+   S   
Sbjct: 880  QIAGLSVLDLSDNILSGKIPSGTQLHSFNASTYDGNPGLCGPPLLKKCQEDETKEVSFTS 939

Query: 858  DDDANTVEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLY 917
              +   ++D+ N    + FY ++ LGF +GFWGVCGTL+LNRSWRY Y+  L  +KDWL+
Sbjct: 940  LINEKDIQDDTN---NIWFYGNIVLGFIIGFWGVCGTLLLNRSWRYSYFQTLNKIKDWLH 996

Query: 918  AAAAMNKSNL 927
                 N + L
Sbjct: 997  MTTTTNINRL 1006

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116866|ref|XP_002331833.1| predicted protein [Populus trichocarpa] gi|222875071|gb|EEF12202.1| predicted protein [Populus trichocarpa]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/944 (45%), Positives = 581/944 (61%), Gaps = 68/944 (7%)

Query: 35  CIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDH 94
           CI+ ER+ALL FK+ L+D++G+LS+WGSE+ KRDCCKWRGV CSN TGHV  L+L   ++
Sbjct: 40  CIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHRENY 99

Query: 95  EFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSK 154
                + L G IS +LL+L+ L +L+L+ + FGGS  P FIGSL KLRYL+LS       
Sbjct: 100 NGYYYQ-LSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGT 158

Query: 155 IPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLH 214
           + + F +LS  +Y ++      +  SL+ LS+  SL+HLDL   +L+++ DW QV+++L 
Sbjct: 159 LSNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLRGNDLSETIDWLQVLNRLP 218

Query: 215 SLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDL 274
            L  L+L SC L  I    + L N S S+  +D S N L SSS++ WL N   +++ LDL
Sbjct: 219 RLHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDL-SSSIFHWLANFGNSLIDLDL 277

Query: 275 GFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSEL 334
             N+LQGSIP+ F +M SLR L L+SN+L+G +  F G MCSLN+L +  N L G+LS+L
Sbjct: 278 SHNNLQGSIPDVFTNMTSLRTLDLSSNQLQGDLSSF-GQMCSLNKLCISENNLIGELSQL 336

Query: 335 IQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT----------- 383
                 GC  NSLE L L  N + G +PD+ RF S++ L L  N LNG+           
Sbjct: 337 F-----GCVENSLEILQLDRNQLYGSLPDITRFTSMRELNLSGNQLNGSLPERFSQRSEL 391

Query: 384 ------------------------------------INKSLSHLFKLETLSLDGNSFTGV 407
                                               +++S+  LF+LE L + GNS  GV
Sbjct: 392 VLLYLNDNQLTGSLTDVAMLSSLRELGISNNRLDGNVSESIGSLFQLEKLHVGGNSLQGV 451

Query: 408 ISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQL 467
           +SE  FSN+S L +L L DNSL LK   +W P FQL  + L+SC +GP FP WL+ Q   
Sbjct: 452 MSEAHFSNLSKLTVLDLTDNSLALKFESNWAPTFQLDRIFLSSCDLGPPFPQWLRNQTNF 511

Query: 468 ISLDISNIGISDTIPDWFWDLS-IELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNF 526
           + LDIS   ISDTIP+WFW+LS  +L  L+LS+N +SG LPD S   ++   ID+S N F
Sbjct: 512 MELDISGSRISDTIPNWFWNLSNSKLELLDLSHNKMSGLLPDFSSKYANLRSIDLSFNQF 571

Query: 527 DGPIPPLPSNS-----TFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGF 580
           +GP    P N        L+LS N   G +PDC +NF SLS+LNLA+N FSGKI  S+G 
Sbjct: 572 EGP-ASCPCNIGSGILKVLDLSNNLLRGWIPDCLMNFTSLSVLNLASNNFSGKILSSIGS 630

Query: 581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS 640
           +  ++TLSL NN   GELP SL+NCS L  LDL  N L GE+P  +G S+ +L +L L+S
Sbjct: 631 MVYLKTLSLHNNSFVGELPLSLRNCSSLAFLDLSSNKLRGEIPGWIGESMPSLKVLSLRS 690

Query: 641 NNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVV 700
           N F+G+I   LCHL+ I +LDLSLNNI+G IPKC +N + M+Q+  S     LAN  ++ 
Sbjct: 691 NGFNGSILPNLCHLSNILILDLSLNNITGIIPKCLNNLTSMVQKTESE--YSLANNAVLS 748

Query: 701 PGYIY--YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTAL 758
           P +    Y  Y + + + WKG E  Y+STLG ++ ++L+ NKL   IPEEIT L+ L AL
Sbjct: 749 PYFTSDSYDAYQNKMRVGWKGREDGYESTLGLLRIINLARNKLIGEIPEEITGLLLLLAL 808

Query: 759 NLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIP 818
           NLS N LTG IP KIGQLK L+ LDLS N  SG IP +++ L+ L+ L+LS N LSG+IP
Sbjct: 809 NLSGNTLTGEIPQKIGQLKQLESLDLSGNQLSGVIPITMADLNFLAFLNLSNNHLSGRIP 868

Query: 819 LGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRDDDANTVEDEDNQFITLGFYV 878
             TQLQ FNAS + GNL LCG PL  KC  +E+  SP  +DD    E   ++F+   F +
Sbjct: 869 SSTQLQGFNASQFTGNLALCGQPLLQKCPGDETNQSPPANDDNRGKEVVADEFMKW-FCI 927

Query: 879 SLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDWLYAAAAM 922
           S+ +GF V FWGV G L+L RSWR+ Y+ FL    DWLY   A+
Sbjct: 928 SMGIGFSVFFWGVSGALLLKRSWRHAYFRFLDESWDWLYVKVAV 971

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125666|ref|XP_002329688.1| predicted protein [Populus trichocarpa] gi|222870596|gb|EEF07727.1| predicted protein [Populus trichocarpa]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/972 (45%), Positives = 574/972 (59%), Gaps = 121/972 (12%)

Query: 19  LFQLEPRL--GASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDG-KRDCCKWRGV 75
           L QL PR    A     RCI+ ER+ALL+FKQ L    G+LSSWGSE+G K DCCKW GV
Sbjct: 16  LHQLRPRFISAAERAEFRCIERERQALLSFKQELEYPSGLLSSWGSEEGEKSDCCKWVGV 75

Query: 76  RCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFI 135
            C+N TG + +L+L    H  A    + G I+ +LL+L+ L +LDLS N F G+P P F+
Sbjct: 76  GCNNRTGRITMLDL----HGLA----VGGNITDSLLELQHLNYLDLSDNSFYGNPFPSFV 127

Query: 136 GSLSKLRYLNLS----CGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLR 191
           GSL KLRYL+LS     G  S ++ +     S    +N +     S  SL+ LS LS L 
Sbjct: 128 GSLRKLRYLSLSNNGLIGRLSYQLGNLSSLQSLDLSYNFD----VSFESLDWLSRLSFLE 183

Query: 192 HLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN 251
           HL L+  +LT++SDW QVV++L  LK L L  C L  I P  +   N S S+  LDLS N
Sbjct: 184 HLHLTGNHLTQASDWIQVVNKLPRLKDLQLSDCSLLSIVPPALSFVNSSRSLAILDLSFN 243

Query: 252 HLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFF 311
           HL SSS+ PWL N S +++ LDL  N LQGSIP+AF  M SL  L LA N+LEGGIP+ F
Sbjct: 244 HL-SSSIVPWLSNSSDSLVDLDLSANQLQGSIPDAFGKMTSLTNLHLADNQLEGGIPRSF 302

Query: 312 GNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLK 371
           G MCSL +L L  N LSG L   I+N+  GC  NSL+ L L  N + G +PD  RF S+ 
Sbjct: 303 GGMCSLRELDLSPNNLSGPLPRSIRNMH-GCVENSLKSLQLRDNQLHGSLPDFTRFSSVT 361

Query: 372 VLKLGENHLNGTINK--------------------------------------------- 386
            L +  N LNG++ K                                             
Sbjct: 362 ELDISHNKLNGSLPKRFRQRSELVSLNLSDNQLTGSLPDVTMLSSLREFLIYNNRLDGNA 421

Query: 387 --SLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLK 444
             S+  L +LE L++  NS  GV+SE  FSN+S LQ L L+ NSL LK ++DW P F L 
Sbjct: 422 SESIGSLSQLEKLNVGRNSLQGVMSEAHFSNLSKLQELDLSHNSLVLKFTYDWAPPFLLN 481

Query: 445 WLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLS-IELFFLNLSNNHIS 503
           +L L+SC +GPHFP WL+ QN L  LDIS  GISDTIP+WFWDLS   L  LN S+N++ 
Sbjct: 482 YLYLSSCNLGPHFPQWLRNQNNLWVLDISGTGISDTIPNWFWDLSNSSLTLLNFSHNNMR 541

Query: 504 GKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFNSLSI 562
           G                          P L S    L+LSKN  SG LP+  + F+ L+ 
Sbjct: 542 G--------------------------PQLIS----LDLSKNLLSGNLPNSLIPFDGLAF 571

Query: 563 LNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEV 622
           L+LA+N FSG+IP S+G L  ++TL+LRN+  +  LP SLK C+ L  LDL  N L G++
Sbjct: 572 LDLAHNNFSGRIPRSLGSLSMLRTLNLRNHSFSRRLPLSLKKCTDLMFLDLSINKLHGKI 631

Query: 623 PTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMI 682
           P  +G SL +L  L L+SN FHG+IP   C L  I++L+LSLNNISG IPKC +N++ MI
Sbjct: 632 PAWMGESLLSLKFLFLQSNEFHGSIPSHFCRLRHIKILNLSLNNISGIIPKCLNNYTAMI 691

Query: 683 QEKSSNPI----IGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSS 738
           Q+     I    +GL       PG     ++++   + WKG ++EY  +LG  + +D + 
Sbjct: 692 QKGELTDINSGELGLGQ-----PG-----QHVNKAWVDWKGRQYEYVRSLGLFRIIDFAG 741

Query: 739 NKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLS 798
            KL   IPEEI  L+ L A+NLS NNLTG IP KIGQLK L+ LDLS N  SG IPSS +
Sbjct: 742 KKLTGEIPEEIISLLQLVAMNLSGNNLTGGIPLKIGQLKQLESLDLSGNQLSGVIPSSTA 801

Query: 799 LLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRD 858
            LS LS L+LSYN+LSGKIP GTQLQSFNAS +AGNL LCGLP+ +KC  +E+TP P  +
Sbjct: 802 SLSFLSYLNLSYNNLSGKIPSGTQLQSFNASAFAGNLALCGLPVTHKCPGDEATPRPLAN 861

Query: 859 DDAN---TVEDEDNQFITLGFYVSLTLGFFVGFWGVCGTLMLNRSWRYGYYNFLTGMKDW 915
           DD     TV DE  ++    FY +L +GF V FWGV G L+L RSWR+ Y+ FL    DW
Sbjct: 862 DDNQGNETVVDEFRRW----FYTALGIGFGVFFWGVSGALLLKRSWRHAYFRFLDEAWDW 917

Query: 916 LYAAAAMNKSNL 927
           +Y   A+ K+ L
Sbjct: 918 IYVKIAVQKARL 929

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	927
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.843	0.877	0.315	2.7e-75
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.823	0.843	0.294	7.5e-73
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.861	0.847	0.309	4.9e-69
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.645	0.824	0.332	5.1e-67
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.670	0.710	0.327	3.6e-66
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.816	0.770	0.298	4.5e-66
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.814	0.844	0.301	5.2e-65
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.673	0.718	0.312	3.7e-64
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.628	0.497	0.313	5.7e-64
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.846	0.820	0.298	7.7e-64

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 272/863 (31%), Positives = 398/863 (46%)

Query:    35 CIDEEREALLTFKQSLV------DEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLN 88
             C+ ++R+ALL FK          D   +L +        DCC W G+ C   TG V  L+
Sbjct:    26 CLPDQRDALLEFKNEFSIPSPDSDLMLILQTTAKWRNNTDCCSWGGISCDPKTGVVVELD 85

Query:    89 LQTSDHEFARRKFLKGKI--SPAXXXXXXXXXXXXSKNDFGGSPVPEFIGSLSKLRYLNL 146
             L  SD        L G++  + +            S ND   + +P+  G+   LR LNL
Sbjct:    86 LGNSD--------LNGRLRSNSSLFRLQHLQSLDLSYNDLSCT-LPDSSGNFKYLRVLNL 136

Query:   147 -SCGTPSSKIPHPFRDLSGFEYFNVE-NSNLFSVGXXXXXXXXXXXXXXXXXCINLTKSS 204
               C     +IP   R LS     ++  N +L                      ++LT   
Sbjct:   137 LGCNL-FGEIPTSLRSLSYLTDLDLSYNDDL------TGEILDSMGNLKHLRVLSLTSCK 189

Query:   205 DWFQVVSQLHSLKTLV---LRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPW 261
                ++ S L +L  L    L   Y     P  +   NL  S+  L+L   +     +   
Sbjct:   190 FTGKIPSSLGNLTYLTDLDLSWNYFTGELPDSMG--NLK-SLRVLNLHRCNF-FGKIPTS 245

Query:   262 LFNLSRNILHLDLGFNHLQGSIPEA---------FQHMV----SLRLLSLASNELEGGIP 308
             L +LS N+  LD+  N      P++         FQ M+    SL  + L+SN+ +  +P
Sbjct:   246 LGSLS-NLTDLDISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSSLTNVDLSSNQFKAMLP 304

Query:   309 KFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL 368
                 ++  L    +  N  SG +       SS   + SL  L L  ND +GP+  +G   
Sbjct:   305 SNMSSLSKLEAFDISGNSFSGTIP------SSLFMLPSLIKLDLGTNDFSGPLK-IGNIS 357

Query:   369 S---LKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLA 425
             S   L+ L +GEN++NG I +S+  L  L  LSL      G++  + F  + +L+ L L+
Sbjct:   358 SPSNLQELYIGENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSIFLQLKSLRSLDLS 417

Query:   426 DNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWF 485
               +L +  SH  +P+  +  L L+SC +   FP +L+ Q  L  LDIS   I   +P+W 
Sbjct:   418 GINLNISSSHH-LPSHMMH-LILSSCNIS-QFPKFLENQTSLYHLDISANQIEGQVPEWL 474

Query:   486 WDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN 545
             W L   L ++N++ N  SG   +L++L +       S N F G IP        L LS N
Sbjct:   475 WRLPT-LRYVNIAQNAFSG---ELTMLPNPIYSFIASDNKFSGEIPRAVCEIGTLVLSNN 530

Query:   546 KFSG-LPDCW-LNFNSLSILNLANNRFSGKIPDSMGFLHN-IQTLSLRNNRLNGELPSSL 602
              FSG +P C+ ++  +LSIL+L NN  SG IP+    LH  +++L + +NRL+G+ P SL
Sbjct:   531 NFSGSIPPCFEISNKTLSILHLRNNSLSGVIPEES--LHGYLRSLDVGSNRLSGQFPKSL 588

Query:   603 KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI--PFQLCHLAFIQVL 660
              NCS L+ L++ +N +    P+ +  SL NL +L L+SN FHG I  P      + ++  
Sbjct:   589 INCSYLQFLNVEENRINDTFPSWLK-SLPNLQLLVLRSNEFHGPIFSPGDSLSFSKLRFF 647

Query:   661 DLSLNNISGKIPK-CFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKG 719
             D+S N  SG +P   F  +S+M    S   II       VV      F    +V+LT KG
Sbjct:   648 DISENRFSGVLPSDYFVGWSVM---SSFVDIIDNTPGFTVVGDDQESFH--KSVVLTIKG 702

Query:   720 SEHEYKSTLGFVKY--LDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK 777
                E   + GF  Y  +D+S N+L   IPE I  L  L  LN+S N  TG IPP +  L 
Sbjct:   703 LNMELVGS-GFEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLS 761

Query:   778 SLDFLDLSRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIPLGTQLQSFNASVYAGNLEL 837
             +L  LDLS+N  SG+IP               YN L G IP GTQ+QS N+S +A N  L
Sbjct:   762 NLQSLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGL 821

Query:   838 CGLPLPNKCADEESTPSPGRDDD 860
             CG PL  KC  EE       + D
Sbjct:   822 CGAPLQKKCGGEEEEDKEKEEKD 844

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 241/817 (29%), Positives = 383/817 (46%)

Query:    34 RCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSD 93
             +CI  ER+ALLTF+ +L D    L SW   D    CC W GV C   T HV  ++L+   
Sbjct:    32 KCISTERQALLTFRAALTDLSSRLFSWSGPD----CCNWPGVLCDARTSHVVKIDLRNPS 87

Query:    94 HEFA----RRKFLKGKISPAXXXXXXXXXXXXSKNDFGGSPVPEFIGSLSKLRYLNLSCG 149
              +      +R  L+GKI P+            S NDF    +PEFIG +  LRYLNLS  
Sbjct:    88 QDVRSDEYKRGSLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSSS 147

Query:   150 TPSSKIPHPFRDLSGFEYFNVENSNLFSVGXXXXXXXXXXXXXXXXXC--------INLT 201
             + S +IP    +LS  E  ++   +    G                          +NL+
Sbjct:   148 SFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYVNLS 207

Query:   202 KSSD-WFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYP 260
              + + W Q  S++ +LK L L +  L  + P+     +L   +E LDLS+N L +S +  
Sbjct:   208 GAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLKL-LEVLDLSENSL-NSPIPN 265

Query:   261 WLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN-ELEGGIPKFFGNMCSLNQ 319
             WLF L+ N+  L L ++ LQGSIP  F+++  L  L L++N  L+G IP   G++  L  
Sbjct:   266 WLFGLT-NLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLPQLKF 324

Query:   320 LYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGEN 378
             L L  N+L+GQ+   +   S     NSL  L L +N + G +P+ LG   +L+ L L  N
Sbjct:   325 LDLSANELNGQIHGFLDAFSRN-KGNSLVFLDLSSNKLAGTLPESLGSLRNLQTLDLSSN 383

Query:   379 HLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSL--TLKLSHD 436
                G++  S+ ++  L+ L L  N+  G I+E+    ++ L  L L  N+    L+ SH 
Sbjct:   384 SFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESL-GQLAELVDLNLMANTWGGVLQKSH- 441

Query:   437 WVPAFQLKWLSLAS---CKMGPHFPN-WLQT-QNQLISLDISNIGISDTIPDWFWDLSIE 491
             +V    LK + L +     +    P+ W+   + +LI ++   IG+    P W   +  +
Sbjct:   442 FVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIENCRIGL---FPMWL-QVQTK 497

Query:   492 LFFLNLSNNHISGKLPD--LSVLKSDDIVIDISSNNFDGPIPP---LPSNSTFLNLSKNK 546
             L F+ L N  I   +PD   S + S    + +++N   G +P     P  +T ++LS N 
Sbjct:   498 LNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKLNT-IDLSSNN 556

Query:   547 FSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLH-NIQTLSLRNNRLNGELPSSLKNC 605
             F G    W + N+   L L  N FSG +P ++  L   ++ + L +N   G +PSSL   
Sbjct:   557 FEGTFPLW-STNATE-LRLYENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGNIPSSLCEV 614

Query:   606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLN 665
             S L++L LRKN   G  P C       L  + +  NN  G IP  L  L  + VL L+ N
Sbjct:   615 SGLQILSLRKNHFSGSFPKCWHRQFM-LWGIDVSENNLSGEIPESLGMLPSLSVLLLNQN 673

Query:   666 NISGKIPKCFSNFSMMIQ-EKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEY 724
             ++ GKIP+   N S +   +   N + G     +     ++  R   N   ++ G   + 
Sbjct:   674 SLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFMLRLQSN---SFTGQIPDD 730

Query:   725 KSTLGFVKYLDLSSNKLCEAIPEEITDLVGLT--ALNLSRNNLTGLIPPKIGQLKSL-DF 781
                +  ++ LDLS NK+   IP+ I++L  +     N    NL  ++  +  + +++ + 
Sbjct:   731 LCNVPNLRILDLSGNKISGPIPKCISNLTAIARGTNNEVFQNLVFIVT-RAREYEAIANS 789

Query:   782 LDLSRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIP 818
             ++LS N+ SG IP                NS++G IP
Sbjct:   790 INLSGNNISGEIPREILGLLYLRILNLSRNSMAGSIP 826

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 275/889 (30%), Positives = 412/889 (46%)

Query:    49 SLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTS-----DHE----FARR 99
             S V  +    SW +     DCC W G+ C   +G V  L+L  S      H     F  +
Sbjct:    69 SRVSPHPTTESWRNNS---DCCNWEGITCDTKSGEVIELDLSCSWLYGSFHSNSSLFRLQ 125

Query:   100 KF---------LKGKISPAXXXXXXXXXXXXSKNDFGGSPVPEFIGSLSKLRYLNLSCGT 150
                        L G+I  +            S N F G  +P  I +LS+L  L+LS   
Sbjct:   126 NLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLSYNQFLGL-IPSSIENLSRLTSLHLSSNQ 184

Query:   151 PSSKIPHPFRDLSGFEYFNVENSNLFSVGXXXXXXXXXXXXXXXXXCINLTKSSDWF-QV 209
              S +IP    +LS      + +SN FS G                  ++L  S+D+F Q+
Sbjct:   185 FSGQIPSSIGNLSHLTSLEL-SSNQFS-GQIPSSIGNLSNLTF----LSLP-SNDFFGQI 237

Query:   210 VSQLHSLKTLV-LRSCY---LPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNL 265
              S + +L  L  L   Y   +  I  SF    NL+  I  L +  N L S +V   L NL
Sbjct:   238 PSSIGNLARLTYLYLSYNNFVGEIPSSF---GNLNQLI-VLQVDSNKL-SGNVPISLLNL 292

Query:   266 SRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
             +R +  L L  N   G+IP     + +L     ++N   G +P    N+  L +L L  N
Sbjct:   293 TR-LSALLLSHNQFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDN 351

Query:   326 KLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIP-DLGRFLSLKVLKLGENHLNGT- 383
             +L+G L     N+SS    ++L+ L + +N+  G IP  L RF++L +  L  +HLN   
Sbjct:   352 QLNGTLH--FGNISSP---SNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDL--SHLNTQC 404

Query:   384 --INKSL-SHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN--SLTLKLSHDWV 438
               ++ S+ SHL  L+ L L   + T +           L+ L ++ N  S T K S    
Sbjct:   405 RPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSD 464

Query:   439 PAFQ-LKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNL 497
             P  Q ++ L L+ C +   FP  L+TQ++L  LD+SN  I   +P W W L   LF+LNL
Sbjct:   465 PPSQSIQSLYLSGCGI-TDFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLP-NLFYLNL 522

Query:   498 SNNHI-----SGKLPDLSVLKSDDIV-IDISSNNFDGPIPP----LPSNSTFLNLSKNKF 547
             SNN       S K   LS ++   ++ +  S+NNF G IP     L S +T L+LS+N +
Sbjct:   523 SNNTFISFESSSKKHGLSSVRKPSMIHLFASNNNFTGKIPSFICGLRSLNT-LDLSENNY 581

Query:   548 SG-LPDCWLNFNS-LSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNC 605
             +G +P C     S L +LNL  N  SG +P  +    ++++L + +N L G+LP SL   
Sbjct:   582 NGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHI--FESLRSLDVGHNLLVGKLPRSLIRF 639

Query:   606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLN 665
             S L VL++  N +    P  +  SL  L +L L+SN FHG  P        ++++D+S N
Sbjct:   640 SNLEVLNVESNRINDTFPFWLS-SLSKLQVLVLRSNAFHG--PIHEATFPELRIIDISHN 696

Query:   666 NISGKIP-KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEY 724
             + +G +P + F  +S M      N     +NE  +  G +YY    D+++L  KG   E 
Sbjct:   697 HFNGTLPTEYFVKWSAM-SSLGKNE--DQSNEKYMGSG-LYY---QDSMVLMNKGLAMEL 749

Query:   725 KSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDL 784
                L     LD S NK    IP+ I  L  L  LNLS N   G IP  +G L +L+ LD+
Sbjct:   750 VRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDV 809

Query:   785 SRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPN 844
             S+N  +G IP               +N L+G +P GTQ +  N S +  NL L G  L  
Sbjct:   810 SQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDE 869

Query:   845 KCADEESTPSPGRDDDANTVEDEDNQFIT-----LGFYVSLTLGFFVGF 888
              C D+  TP+  +++   T E+ED + I+     +GF   +  G  +G+
Sbjct:   870 VCRDKH-TPASQQNETTET-EEEDEEEISWIAAAIGFIPGIVFGLTIGY 916

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 218/656 (33%), Positives = 326/656 (49%)

Query:   269 ILHLDLGFNHLQGSIPE--AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNK 326
             ++ LDL  + L G +    +   +  L+ L L+SN + G +P   GN+  L  L      
Sbjct:    88 VVELDLMSSCLNGPLRSNSSLFRLQHLQSLELSSNNISGILPDSIGNLKYLRSLSFRTCH 147

Query:   327 LSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLG----RFLSLKV---------- 372
             L G++   + +LS       L  L L  ND T   PD G    R   L++          
Sbjct:   148 LFGKIPSSLGSLSY------LTHLDLSYNDFTSEGPDSGGNLNRLTDLQLVLLNLSSVTW 201

Query:   373 LKLGENHLNGT--INKSLS-HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSL 429
             + LG N L G   ++ S+  HL  L +L L   +   ++  +FFS++ +L  L L+   +
Sbjct:   202 IDLGSNQLKGRGIVDFSIFLHLKSLCSLDLSYLNTRSMVDLSFFSHLMSLDELDLS--GI 259

Query:   430 TLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLS 489
              LK+S           L LASC +   FP +L+ Q  L  LDIS   I   +P+W W L 
Sbjct:   260 NLKISSTLSFPSATGTLILASCNI-VEFPKFLENQTSLFYLDISANHIEGQVPEWLWRLP 318

Query:   490 IELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLN---LSKNK 546
               L F+N++ N  SG+LP   +L +       S N F G IP        LN   LS NK
Sbjct:   319 T-LSFVNIAQNSFSGELP---MLPNSIYSFIASDNQFSGEIPRTVCELVSLNTLVLSNNK 374

Query:   547 FSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNC 605
             FSG +P C+ NF ++SIL+L NN  SG  P  +     + +L + +N L+G+LP SL  C
Sbjct:   375 FSGSIPRCFENFKTISILHLRNNSLSGVFPKEI-ISETLTSLDVGHNWLSGQLPKSLIKC 433

Query:   606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQL-CHLAF--IQVLDL 662
             + L  L++  N +  + P  +  SL NL IL L+SN F+G I F L   L+F  +++ D+
Sbjct:   434 TDLEFLNVEDNRINDKFPFWLR-SLSNLQILVLRSNEFYGPI-FSLEDSLSFPKLRIFDI 491

Query:   663 SLNNISGKIPK-CFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSE 721
             S N+ +G +P   F+ +S M    S   I     ++ ++  +  Y  Y ++V+LT KG  
Sbjct:   492 SENHFTGVLPSDYFAGWSAM---SSVVDIFDTTPQVHILGVFQGY--YHNSVVLTNKGLN 546

Query:   722 HEYKSTLGFVKY--LDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL 779
              E   + GF  Y  +D+S N+L   IPE I  L  L  LN+S N  TG IPP +  L +L
Sbjct:   547 MELVGS-GFTIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNL 605

Query:   780 DFLDLSRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIPLGTQLQSFNASVYAGNLELCG 839
               LDLS+N  SG+IP               YN L G IP  TQ+QS N+S +A N  LCG
Sbjct:   606 QSLDLSQNRLSGSIPPELGKLTFLEWMNFSYNRLEGPIPQATQIQSQNSSSFAENPGLCG 665

Query:   840 LPLPNKCA--DEESTPSPGRDDDANTVEDEDNQFITLGFYVSLTLGFFVGFWGVCG 893
              P  NKC   +EE   +  +++D +  ++E NQ  +   +++  +G+  G +  CG
Sbjct:   666 APFLNKCGGEEEEEEEATKQEEDEDEEKEEKNQVFS---WIAAAIGYVPGVF--CG 716

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 220/671 (32%), Positives = 330/671 (49%)

Query:   237 FNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL 296
             F     +  L L +N L S ++   + NL++ +  + L  N   G++P     +  L   
Sbjct:   203 FGSLNQLSILRLDNNKL-SGNLPLEVINLTK-LSEISLSHNQFTGTLPPNITSLSILESF 260

Query:   297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
             S + N   G IP     + S+  ++L  N+LSG L     N+SS   +  L+   L  N+
Sbjct:   261 SASGNNFVGTIPSSLFTIPSITLIFLDNNQLSGTLE--FGNISSPSNLLVLQ---LGGNN 315

Query:   357 ITGPIP-DLGRFLSLKVLKLGENHLNGTINKSL-SHLFKLETLSLD-GNSFTGVISETFF 413
             + GPIP  + R ++L+ L L   ++ G ++ ++ SHL  L  L L   N+ T +      
Sbjct:   316 LRGPIPTSISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVL 375

Query:   414 SNMSNLQMLFLADNSL--TLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLD 471
             S    L  L L+ N +  T K S    P   +  L+L+ C +   FP+ L+TQ Q+ +LD
Sbjct:   376 SCFKMLISLDLSGNHVLVTNKSSVSDPPLGLIGSLNLSGCGI-TEFPDILRTQRQMRTLD 434

Query:   472 ISNIGISDTIPDWFWDLSIELFFLNLSNNHISG-----KLPDLSVLKSDDIVIDISSNNF 526
             ISN  I   +P W   L ++L ++++SNN+  G     KL    V K        S+NNF
Sbjct:   435 ISNNKIKGQVPSW---LLLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNF 491

Query:   527 DGPIPPLPSNST---FLNLSKNKFSG-LPDCWLNFNS-LSILNLANNRFSGKIPDSMGFL 581
              G IP    +      L+LS N FSG +P C   F S LS LNL  NR SG +P ++  +
Sbjct:   492 SGKIPSFICSLRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTI--I 549

Query:   582 HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
              ++++L + +N L G+LP SL + S L VL++  N +    P  +  SL+ L +L L+SN
Sbjct:   550 KSLRSLDVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLS-SLKKLQVLVLRSN 608

Query:   642 NFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK-CFSNFSMMIQ-EKSSNPIIGLANEILV 699
              FHG I         ++++D+S N+ +G +P  CF  ++ M   EK+ +      NE  +
Sbjct:   609 AFHGRI--HKTRFPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRF----NEKYM 662

Query:   700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALN 759
               GY     Y D+++L  KG E E    L     LD S NK    IP  I  L  L  LN
Sbjct:   663 GSGY-----YHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILN 717

Query:   760 LSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIPL 819
             LS N  TG IP  +G L+ L+ LD+SRN  SG IP               +N L G++P 
Sbjct:   718 LSSNGFTGHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPG 777

Query:   820 GTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRDDDANTVEDEDN-QFIT--LGF 876
             GTQ ++ +AS +  NL LCG PL       E TPS G   ++ T+E E    +I   +GF
Sbjct:   778 GTQFRTQSASSFEENLGLCGRPLEECRVVHEPTPS-G---ESETLESEQVLSWIAAAIGF 833

Query:   877 YVSLTLGFFVG 887
                + LG  +G
Sbjct:   834 TPGIVLGLTIG 844

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 244/818 (29%), Positives = 390/818 (47%)

Query:    95 EFARRKFLKGKISPAXXXXXXXXXXXXSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSK 154
             +F+   F  G+I  +            S N+F G  VP  IG+LS L  L LS  +   +
Sbjct:   166 DFSHNNF-SGQIPSSLGYLSHLTSFNLSYNNFSGR-VPSSIGNLSYLTTLRLSRNSFFGE 223

Query:   155 IPHPFRDLSGFEYFN-VENSNLFSVGXXXXXXXXXXXXXXXXXCINLTKSSDWFQV---V 210
             +P     L  F   + + ++N F VG                  I+L K++   ++   +
Sbjct:   224 LPSSLGSL--FHLTDLILDTNHF-VGKIPSSLGNLSHLTS----IDLHKNNFVGEIPFSL 276

Query:   211 SQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPW-LFNLSRNI 269
               L  L + +L    +    PS     NL+  ++ L++  N L  S  +P  L NL R +
Sbjct:   277 GNLSCLTSFILSDNNIVGEIPSSFG--NLN-QLDILNVKSNKLSGS--FPIALLNL-RKL 330

Query:   270 LHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG 329
               L L  N L G++P     + +L+L     N   G +P    N+ SL  + L  N+L+G
Sbjct:   331 STLSLFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPSSLFNIPSLKTITLENNQLNG 390

Query:   330 QLSELIQNLSSGCTVNSLEGLCLYANDITGPIP-DLGRFLSLKVLKLGENHLNGTINKSL 388
              L     N+SS    ++L  L L  N+  GPI   + + ++LK L L   +  G ++ ++
Sbjct:   391 SLG--FGNISS---YSNLTVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTI 445

Query:   389 -SHLFKLETLSLDG-NSFTGVISETFFSNMSNLQMLFLADN--SLTLKLSHDWVPAFQLK 444
              SHL  +E L+L   N+ T +      S+   L  L L+ +  S T K S        + 
Sbjct:   446 FSHLKSIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLIS 505

Query:   445 WLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG 504
              L L+ C +   FP +L++Q  +++LDISN  I   +P W W L + L ++NLSNN   G
Sbjct:   506 QLYLSGCGI-TEFPKFLRSQELMLTLDISNNKIKGQVPGWLWMLPV-LNYVNLSNNTFIG 563

Query:   505 -----KLPDLSVLKSDDI-VIDISSNNFDGPIPP----LPSNSTFLNLSKNKFSG-LPDC 553
                  KL   S+ +   +  +  S+NNF G IP     LP  ST L+ S NKF+G +P C
Sbjct:   564 FERSTKLGLTSIQEPPAMRQLFCSNNNFTGNIPSFICELPYLST-LDFSNNKFNGSIPTC 622

Query:   554 WLNFNS--LSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVL 611
               N  S  L  LNL +NR SG +P+++    ++ +L + +N+L G+LP SL + S L +L
Sbjct:   623 MGNIQSPYLQALNLRHNRLSGLLPENI--FESLISLDVGHNQLVGKLPRSLSHISSLGLL 680

Query:   612 DLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKI 671
             ++  N +    P  +  SLQ L +L L+SN F+G  P +    + ++++D+S N  +G +
Sbjct:   681 NVESNKISDTFPLWLS-SLQELQVLVLRSNAFYG--PIEKTQFSKLRIIDISGNQFNGTL 737

Query:   672 P-KCFSNFSMMIQ-EKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLG 729
             P   F N++ M   +++ +   G     + +    +YF   D+++L  KG E E +  L 
Sbjct:   738 PANFFVNWTAMFSLDENEDQSNGETMSNMYMSTDYFYF---DSMVLMNKGVEMELERVLK 794

Query:   730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
                 +D S NK    IP+ I  L  L  LNLS N L+G I   +G L +L+ LD+S+N  
Sbjct:   795 VFTVIDFSGNKFEGEIPKSIGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKL 854

Query:   790 SGNIPXXXXXXXXXXXXXXXYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADE 849
             SG IP               +N L G +P GTQ Q+   S +  N  L G  L   C   
Sbjct:   855 SGEIPQELGKLTYLAYMNFSHNQLVGLLPGGTQFQTQKCSSFEDNHGLYGPSLEKICDIH 914

Query:   850 ESTPSPGRDDDANTVEDEDNQFITLGFYVSLTLGFFVG 887
               TP   + D A   E+++ + I+   +++  +GF +G
Sbjct:   915 GKTPQ--QSDMAPEPEEDEEEVIS---WIAAVIGFILG 947

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 249/827 (30%), Positives = 373/827 (45%)

Query:   103 KGKISPAXXXXXXXXXXXXSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDL 162
             +G+I+ +            S N F G  +   IG+LS+L  L+LS    S +IP    +L
Sbjct:    71 EGQITSSIENLSHLTSLDLSYNRFSGQ-ILNSIGNLSRLTSLDLSFNQFSGQIPSSIGNL 129

Query:   163 SGFEYFNVENSNLFSVGXXXXXXXXXXXXXXXXXCINLTKSSDWFQVVSQLHSLKTLV-L 221
             S   +  +  +  F                     + L+ +  + Q  S +  L  L  L
Sbjct:   130 SHLTFLGLSGNRFFG------QIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNLTNL 183

Query:   222 RSCYLPPIN--PSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHL 279
                Y       PS I   NLS  I  L LS N+       P  F     +  LD+ FN L
Sbjct:   184 HLSYNKYSGQIPSSIG--NLSQLI-VLYLSVNNFYGE--IPSSFGNLNQLTRLDVSFNKL 238

Query:   280 QGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSE---LIQ 336
              G+ P    ++  L ++SL++N+  G +P    ++ +L   Y   N  +G       +I 
Sbjct:   239 GGNFPNVLLNLTGLSVVSLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFIIP 298

Query:   337 NLSS-GCTVNSLEG---------------LCLYANDITGPIPD-LGRFLSLKVLKLGENH 379
             +L+  G + N L+G               L + +N+  GPIP  + + ++L+  +LG +H
Sbjct:   299 SLTYLGLSGNQLKGTLEFGNISSPSNLQYLNIGSNNFIGPIPSSISKLINLQ--ELGISH 356

Query:   380 LNGT---INKSL-SHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN--SLTLKL 433
             LN     ++ S+ SHL  L+ L L   + T +           L+ L L+ N  S T K 
Sbjct:   357 LNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDLSGNLVSATNKS 416

Query:   434 SHDWVPAFQ-LKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIEL 492
             S    P  Q ++ L L+ C +   FP  L+TQ++L  LD+SN  I   +P W W L   L
Sbjct:   417 SVSSDPPSQSIQSLYLSGCGI-TDFPEILRTQHELGFLDVSNNKIKGQVPGWLWTLP-NL 474

Query:   493 FFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL--PSNSTF-LNLSKNKFSG 549
             F+LNLSNN   G         S   ++  S+NNF G IP       S + L+LS N FSG
Sbjct:   475 FYLNLSNNTFIGFQRPTKPEPSMAYLLG-SNNNFTGKIPSFICELRSLYTLDLSDNNFSG 533

Query:   550 -LPDCWLNFNS-LSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSK 607
              +P C  N  S LS LNL  N  SG  P+ +    ++++L + +N+L G+LP SL+  S 
Sbjct:   534 SIPRCMENLKSNLSELNLRQNNLSGGFPEHI--FESLRSLDVGHNQLVGKLPRSLRFFSN 591

Query:   608 LRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNI 667
             L VL++  N +    P  +  SLQ L +L L+SN FHG  P        ++++D+S N+ 
Sbjct:   592 LEVLNVESNRINDMFPFWLS-SLQKLQVLVLRSNAFHG--PINQALFPKLRIIDISHNHF 648

Query:   668 SGKIP-KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKS 726
             +G +P + F  +S M    S       +N   +  GY     Y D+++L  KG E E   
Sbjct:   649 NGSLPTEYFVEWSRM---SSLGTYEDGSNVNYLGSGY-----YQDSMVLMNKGVESELVR 700

Query:   727 TLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSR 786
              L     +D S NK    IP+ I  L  L  LNLS N  TG IP  IG L +L+ LD+S+
Sbjct:   701 ILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDVSQ 760

Query:   787 NHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKC 846
             N   G IP               +N L+G +P G Q  +   S + GNL L G  L   C
Sbjct:   761 NKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEEVC 820

Query:   847 ADEESTPSPGRDDDANTVEDEDNQFIT-----LGFYVSLTLGFFVGF 888
              D   TP+  +  +    E+ED   I+     +GF   +  G   G+
Sbjct:   821 RDIH-TPASHQQFETPQTEEEDEDLISWIAAAIGFGPGIAFGLMFGY 866

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 210/671 (31%), Positives = 334/671 (49%)

Query:   237 FNLSTSIETLDLSDNHLPSSSVYPW-LFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRL 295
             F     +  L +  N L  + ++P  L NL +++  L L  N   G++P     + +L  
Sbjct:   186 FGNMNQLTNLYVDSNDL--TGIFPLSLLNL-KHLSDLSLSRNQFTGTLPSNMSSLSNLEY 242

Query:   296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAN 355
                  N   G +P     + SL  + L  N+L+G L     N+SS  T+  L+   +  N
Sbjct:   243 FEAWGNAFTGTLPSSLFTIASLTSINLRNNQLNGTLE--FGNISSPSTLTVLD---ISNN 297

Query:   356 DITGPIP-DLGRFLSLKVLKLGENHLNGTINKSL-SHLFKLETLSLDG-NSFTGV-ISET 411
             +  GPIP  + +F++L+ L L   +  G ++ S+ ++L  L+ L+L   N+ T + ++  
Sbjct:   298 NFIGPIPKSISKFINLQDLDLSHLNTQGPVDFSIFTNLKSLQLLNLSHLNTTTTIDLNAL 357

Query:   412 FFSNMSNLQMLFLADN--SLTLKLS-HDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLI 468
             F S+++++  + L+ N  S T K+S  D  P   +  L L+ C +   FP  L++Q+++ 
Sbjct:   358 FSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCGI-TEFPELLRSQHKMT 416

Query:   469 SLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG--KLPD--LSVLKSDDIVIDI-SS 523
             +LDISN  I   +P W W L  +L F++LSNN  +G  +  +  LS++    +   + S+
Sbjct:   417 NLDISNNKIKGQVPGWLWTLP-KLIFVDLSNNIFTGFERSTEHGLSLITKPSMQYLVGSN 475

Query:   524 NNFDGPIPP----LPSNSTFLNLSKNKFSG-LPDCWLNFNS-LSILNLANNRFSGKIPDS 577
             NNF G IP     L S  T L+LS N  +G +P C  N  S LS LNL  NR  G +P S
Sbjct:   476 NNFTGKIPSFICALRSLIT-LDLSDNNLNGSIPPCMGNLKSTLSFLNLRQNRLGGGLPRS 534

Query:   578 MGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILR 637
             +    ++++L + +N+L G+LP S    S L VL++  N +    P  +  SL+ L +L 
Sbjct:   535 I--FKSLRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLS-SLKKLQVLV 591

Query:   638 LKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP-KCFSNFSMMIQEKSSNPIIGLANE 696
             L+SN FHG I     H   +++++LS N  SG +P   F N++ M    ++      + E
Sbjct:   592 LRSNAFHGPIHHASFHT--LRIINLSHNQFSGTLPANYFVNWNAMSSLMATED---RSQE 646

Query:   697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLT 756
               +   + YY    D+V+L  KG E E    L     LD S NKL   IP  I  L  L 
Sbjct:   647 KYMGDSFRYYH---DSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKELH 703

Query:   757 ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGK 816
              LNLS N  TG IP  +G L+ L+ LD+S+N  SG IP               +N L G 
Sbjct:   704 VLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQLGGL 763

Query:   817 IPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRDDDANTVEDEDNQFITLGF 876
             +P GTQ +  N S +  N  L G  L   C D  + P+P + +    +E+ED +  +   
Sbjct:   764 VPGGTQFRRQNCSSFKDNPGLYGSSLEEVCLDIHA-PAPQQHEPPE-LEEEDREVFS--- 818

Query:   877 YVSLTLGFFVG 887
             +++  +GF  G
Sbjct:   819 WIAAAIGFGPG 829

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 5.7e-64, Sum P(2) = 5.7e-64
 Identities = 193/616 (31%), Positives = 300/616 (48%)

Query:   251 NHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKF 310
             NHL  S   P       N+  LDL  N L G IP  F ++++L+ L L  N LEG IP  
Sbjct:   202 NHLTGS--IPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAE 259

Query:   311 FGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLS 369
              GN  SL QL L  N+L+G++   + NL        L+ L +Y N +T  IP  L R   
Sbjct:   260 IGNCSSLVQLELYDNQLTGKIPAELGNLVQ------LQALRIYKNKLTSSIPSSLFRLTQ 313

Query:   370 LKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSL 429
             L  L L ENHL G I++ +  L  LE L+L  N+FTG   ++  +N+ NL +L +  N++
Sbjct:   314 LTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSI-TNLRNLTVLTVGFNNI 372

Query:   430 TLKLSHDWVPAFQLKWLSLASCKM-GPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL 488
             + +L  D      L+ LS     + GP  P+ +     L  LD+S+  ++  IP  F  +
Sbjct:   373 SGELPADLGLLTNLRNLSAHDNLLTGP-IPSSISNCTGLKLLDLSHNQMTGEIPRGFGRM 431

Query:   489 SIELFFLNLSNNHISGKLPDLSVLKSDDI-VIDISSNNFDGPIPPLPSNST---FLNLSK 544
             +  L F+++  NH +G++PD  +    ++  + ++ NN  G + PL         L +S 
Sbjct:   432 N--LTFISIGRNHFTGEIPD-DIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSY 488

Query:   545 NKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLK 603
             N  +G +P    N   L+IL L +N F+G+IP  M  L  +Q L + +N L G +P  + 
Sbjct:   489 NSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMF 548

Query:   604 NCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLS 663
             +   L VLDL  N   G++P      L++L  L L+ N F+G+IP  L  L+ +   D+S
Sbjct:   549 DMKLLSVLDLSNNKFSGQIPALFS-KLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDIS 607

Query:   664 LNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV--VPGYIYYFRYLDNVLLT---WK 718
              N ++G IP       ++   K+    +  +N +L   +P  +     +  + L+   + 
Sbjct:   608 DNLLTGTIPG-----ELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFS 662

Query:   719 GSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLT-ALNLSRNNLTGLIPPKIGQLK 777
             GS          V  LD S N L   IP+E+   + +  +LNLSRN+ +G IP   G + 
Sbjct:   663 GSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMT 722

Query:   778 SLDFLDLSRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIPLGTQLQSFNASVYAGNLEL 837
              L  LDLS N+ +G IP                N+L G +P     ++ NAS   GN +L
Sbjct:   723 HLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDL 782

Query:   838 CGLPLPNK-CADEEST 852
             CG   P K C  ++ +
Sbjct:   783 CGSKKPLKPCTIKQKS 798

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 7.7e-64, P = 7.7e-64
 Identities = 257/861 (29%), Positives = 393/861 (45%)

Query:    69 CCKWRGVRCSNTTGHVKVLN-LQTSDHEFARRKFLKGKISPAXXXXXXXXXXXXSKNDFG 127
             C    G   SN++  ++ L+ L T D  F    F KG+I+ +            S N F 
Sbjct:   104 CSSLHGRFHSNSS--IRNLHFLTTLDLSF--NDF-KGQITSSIENLSHLTYLDLSSNHFS 158

Query:   128 GSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLF-----SVGXXX 182
             G  +   IG+LS+L YLNL     S + P    +LS   + ++  +  F     S+G   
Sbjct:   159 GQ-ILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSYNRFFGQFPSSIGGLS 217

Query:   183 XXXXXXXXXXXXXXCI--------NLTK---SSDWF--QVVSQLHSLKTLVLRSCYLPPI 229
                            I        NLT    S++ F  Q+ S + +L  L     +    
Sbjct:   218 HLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNF 277

Query:   230 NPSFIWLFNLSTSIETLDLSDNHLPSSSVYP-WLFNLSRNILHLDLGFNHLQGSIPEAFQ 288
                    F     +  L + DN L  S  +P  L NL+   L L L  N   G++P    
Sbjct:   278 VGEIPSSFGNLNQLTRLYVDDNKL--SGNFPNVLLNLTGLSL-LSLSNNKFTGTLPPNIT 334

Query:   289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLE 348
              + +L     + N   G  P F   + SL  + L  N+L G L     N+SS   +  L+
Sbjct:   335 SLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLKGTLE--FGNISSPSNLYELD 392

Query:   349 GLCLYANDITGPIPDLGRFLSLKVLKLGENHLN--GTINKSL-SHLFKLETLSLDG-NSF 404
                +  N+  GPIP     L +K+ +L  +HLN  G ++ S+ SHL  L  L++   N+ 
Sbjct:   393 ---IGNNNFIGPIPSSISKL-VKLFRLDISHLNTQGPVDFSIFSHLKSLLDLNISHLNTT 448

Query:   405 TGVISETFFSNMSNLQMLFLADN--SLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQ 462
             T +    F S    L +L L+ N  S T K S    P+  ++ L L+ C +   FP +++
Sbjct:   449 TRIDLNYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPSQLIQSLYLSGCGI-TEFPEFVR 507

Query:   463 TQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG-KLPDLSVLKSDDIVIDI 521
             TQ++L  LDISN  I   +PDW W L I L+++NLSNN + G + P     K +  ++ +
Sbjct:   508 TQHELGFLDISNNKIKGQVPDWLWRLPI-LYYVNLSNNTLIGFQRPS----KPEPSLLYL 562

Query:   522 --SSNNFDGPIPP----LPSNSTFLNLSKNKFSG-LPDCWLNFNS-LSILNLANNRFSGK 573
               S+NNF G IP     L S +T L+LS N F+G +P C  +  S LS+LNL  N  SG 
Sbjct:   563 LGSNNNFIGKIPSFICGLRSLNT-LDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGG 621

Query:   574 IPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633
             +P  +     +++L + +N+L G+LP SL   S L VL++  N +    P  +  SL  L
Sbjct:   622 LPKQI--FEILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLS-SLPKL 678

Query:   634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP-KCFSNFSMMIQEKSSNPIIG 692
              +L L+SN FHG  P        ++++D+S N  +G +P + F  +S M      N    
Sbjct:   679 QVLVLRSNAFHG--PIHEATFPELRIIDISHNRFNGTLPTEYFVKWSAM-SSLGKNE--D 733

Query:   693 LANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDL 752
              +NE  +  G +YY    D+++L  KG   E    L     +D S N+    IP+ I  L
Sbjct:   734 QSNEKYMGSG-LYY---QDSMVLMNKGVAMELVRILTIYTAVDFSGNRFEGEIPKSIGLL 789

Query:   753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPXXXXXXXXXXXXXXXYNS 812
               L  L+LS N  +G +P  +G L +L+ LD+S+N  +G IP               +N 
Sbjct:   790 KELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELGDLSFLAYMNFSHNQ 849

Query:   813 LSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRDDDANTVEDEDNQFI 872
             L+G +P G Q  + N S +  NL L G  L   C D   TP+  +  +    E+ED   I
Sbjct:   850 LAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVCRDIH-TPASHQQFETPETEEEDEDLI 908

Query:   873 T-----LGFYVSLTLGFFVGF 888
             +     +GF   +  G   G+
Sbjct:   909 SWIAAAIGFGPGIAFGLMFGY 929

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037814001 SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (996 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	927
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-66
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-62
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-29
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-19
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  240 bits (613), Expect = 2e-66
 Identities = 211/660 (31%), Positives = 301/660 (45%), Gaps = 117/660 (17%)

Query: 38  EEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFA 97
           EE E LL+FK S+ D    LS+W S     D C W+G+ C+N++  V  ++L        
Sbjct: 29  EELELLLSFKSSINDPLKYLSNWNSSA---DVCLWQGITCNNSS-RVVSIDLSG------ 78

Query: 98  RRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPH 157
             K + GKIS A+ +L  ++ ++LS N   G P+P+ I + S                  
Sbjct: 79  --KNISGKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTS------------------ 117

Query: 158 PFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLK 217
                                         SSLR+L+LS  N T                
Sbjct: 118 ------------------------------SSLRYLNLSNNNFTG--------------- 132

Query: 218 TLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFN 277
                      I    I        +ETLDLS+N L  S   P       ++  LDLG N
Sbjct: 133 ----------SIPRGSIPN------LETLDLSNNML--SGEIPNDIGSFSSLKVLDLGGN 174

Query: 278 HLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQN 337
            L G IP +  ++ SL  L+LASN+L G IP+  G M SL  +YL  N LSG++   I  
Sbjct: 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 338 LSSGCTVNSLEGLCLYANDITGPIP-DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLET 396
           L+      SL  L L  N++TGPIP  LG   +L+ L L +N L+G I  S+  L KL +
Sbjct: 235 LT------SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288

Query: 397 LSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPH 456
           L L  NS +G I E     + NL++L L  N+ T K+        +L+ L L S K    
Sbjct: 289 LDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 457 FPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP-DLSVLKSD 515
            P  L   N L  LD+S   ++  IP+     S  LF L L +N + G++P  L   +S 
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSL 406

Query: 516 DIVIDISSNNFDGPIPPLPSNST------FLNLSKNKFSG-LPDCWLNFNSLSILNLANN 568
             V  +  N+F G    LPS  T      FL++S N   G +     +  SL +L+LA N
Sbjct: 407 RRV-RLQDNSFSG---ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN 462

Query: 569 RFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG 628
           +F G +PDS G    ++ L L  N+ +G +P  L + S+L  L L +N L GE+P  +  
Sbjct: 463 KFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL-S 520

Query: 629 SLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSN 688
           S + L+ L L  N   G IP     +  +  LDLS N +SG+IPK   N   ++Q   S+
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  228 bits (584), Expect = 2e-62
 Identities = 193/602 (32%), Positives = 290/602 (48%), Gaps = 92/602 (15%)

Query: 243 IETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNE 302
           I+T++LS+N L S  +   +F  S ++ +L+L  N+  GSIP     + +L  L L++N 
Sbjct: 95  IQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNM 151

Query: 303 LEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIP 362
           L G IP   G+  SL  L L  N L G++   + NL+S      LE L L +N + G IP
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS------LEFLTLASNQLVGQIP 205

Query: 363 -DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQM 421
            +LG+  SLK + LG N+L+G I   +  L  L  L L  N+ TG I  +   N+ NLQ 
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQY 264

Query: 422 LFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTI 481
           LFL  N L+                       GP  P+    Q  LISLD+S+  +S  I
Sbjct: 265 LFLYQNKLS-----------------------GPIPPSIFSLQK-LISLDLSDNSLSGEI 300

Query: 482 PDWFWDLSIELFFLNLSNNHISGKLP----DLSVLKSDDIVIDISSNNFDGPIPPLPSNS 537
           P+    L   L  L+L +N+ +GK+P     L  L+    V+ + SN F G IP      
Sbjct: 301 PELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQ----VLQLWSNKFSGEIPK----- 350

Query: 538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE 597
              NL K+            N+L++L+L+ N  +G+IP+ +    N+  L L +N L GE
Sbjct: 351 ---NLGKH------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395

Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFI 657
           +P SL  C  LR + L+ N+  GE+P+     L  +  L + +NN  G I  +   +  +
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 658 QVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTW 717
           Q+L L+ N   G +P  F +  +   + S N   G       VP  +             
Sbjct: 455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG------AVPRKL------------- 495

Query: 718 KGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK 777
                    +L  +  L LS NKL   IP+E++    L +L+LS N L+G IP    ++ 
Sbjct: 496 --------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 778 SLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLEL 837
            L  LDLS+N  SG IP +L  +  L  +++S+N L G +P      + NAS  AGN++L
Sbjct: 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607

Query: 838 CG 839
           CG
Sbjct: 608 CG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  185 bits (470), Expect = 5e-48
 Identities = 172/564 (30%), Positives = 255/564 (45%), Gaps = 95/564 (16%)

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPK-FFGNMCSLNQLYL 322
           N SR ++ +DL   ++ G I  A   +  ++ ++L++N+L G IP   F    SL  L L
Sbjct: 67  NSSR-VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 323 PRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIP-DLGRFLSLKVLKLGENHLN 381
             N  +G +           ++ +LE L L  N ++G IP D+G F SLKVL LG N L 
Sbjct: 126 SNNNFTGSIP--------RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177

Query: 382 GTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF 441
           G I  SL++L  LE L+L  N   G I       M +L+ ++L  N+L+ ++        
Sbjct: 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEI-------- 228

Query: 442 QLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNH 501
                           P  +     L  LD+    ++  IP    +L   L +L L  N 
Sbjct: 229 ----------------PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQNK 271

Query: 502 ISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLS 561
           +SG +P         I +D+S N+  G IP L                     +   +L 
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL--------------------VIQLQNLE 311

Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621
           IL+L +N F+GKIP ++  L  +Q L L +N+ +GE+P +L   + L VLDL  N L GE
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 622 VPT--CVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFS 679
           +P   C  G+L  LI   L SN+  G IP  L     ++ + L  N+ SG++P  F+   
Sbjct: 372 IPEGLCSSGNLFKLI---LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 680 MMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN 739
           +                       +Y+    +N L    G  +  K  +  ++ L L+ N
Sbjct: 429 L-----------------------VYFLDISNNNLQ---GRINSRKWDMPSLQMLSLARN 462

Query: 740 KLCEAIPEEITDLVG---LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSS 796
           K    +P    D  G   L  L+LSRN  +G +P K+G L  L  L LS N  SG IP  
Sbjct: 463 KFFGGLP----DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518

Query: 797 LSLLSGLSVLDLSYNSLSGKIPLG 820
           LS    L  LDLS+N LSG+IP  
Sbjct: 519 LSSCKKLVSLDLSHNQLSGQIPAS 542

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  126 bits (317), Expect = 2e-29
 Identities = 99/274 (36%), Positives = 138/274 (50%), Gaps = 35/274 (12%)

Query: 556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSL-KNCSKLRVLDLR 614
           N + +  ++L+    SGKI  ++  L  IQT++L NN+L+G +P  +    S LR L+L 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKC 674
            N   G +P    GS+ NL  L L +N   G IP  +   + ++VLDL  N + GKIP  
Sbjct: 127 NNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 675 FSNFSMMIQEKSSNPIIGLANEILV--VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVK 732
            +N +       S   + LA+  LV  +P  +   + L                     K
Sbjct: 184 LTNLT-------SLEFLTLASNQLVGQIPRELGQMKSL---------------------K 215

Query: 733 YLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792
           ++ L  N L   IP EI  L  L  L+L  NNLTG IP  +G LK+L +L L +N  SG 
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275

Query: 793 IPSSLSLLSGLSVLDLSYNSLSGKIP-LGTQLQS 825
           IP S+  L  L  LDLS NSLSG+IP L  QLQ+
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 94.1 bits (234), Expect = 1e-19
 Identities = 58/132 (43%), Positives = 84/132 (63%), Gaps = 10/132 (7%)

Query: 717 WKGSEHEYKSTLG--FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG 774
           W G++ ++ ST G  F+  L L +  L   IP +I+ L  L ++NLS N++ G IPP +G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIP--LGTQL---QSFNAS 829
            + SL+ LDLS N F+G+IP SL  L+ L +L+L+ NSLSG++P  LG +L    SFN +
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523

Query: 830 VYAGNLELCGLP 841
             AG   LCG+P
Sbjct: 524 DNAG---LCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.8 bits (176), Expect = 1e-12
 Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 540 LNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGEL 598
           L L      G +P+       L  +NL+ N   G IP S+G + +++ L L  N  NG +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 599 PSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN 646
           P SL   + LR+L+L  N+L G VP  +GG L     L   S NF  N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRL-----LHRASFNFTDN 525

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.3 bits (159), Expect = 1e-10
 Identities = 66/230 (28%), Positives = 96/230 (41%), Gaps = 34/230 (14%)

Query: 102 LKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRD 161
           L+G+I  +L   R LR + L  N F G    EF   L  + +L++S      +I     D
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWD 450

Query: 162 LSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVL 221
           +   +  ++  +  F  G L        L +LDLS    + +     V  +L SL  L+ 
Sbjct: 451 MPSLQMLSLARNKFF--GGLPDSFGSKRLENLDLSRNQFSGA-----VPRKLGSLSELM- 502

Query: 222 RSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG 281
                                   L LS+N L  S   P   +  + ++ LDL  N L G
Sbjct: 503 -----------------------QLKLSENKL--SGEIPDELSSCKKLVSLDLSHNQLSG 537

Query: 282 SIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
            IP +F  M  L  L L+ N+L G IPK  GN+ SL Q+ +  N L G L
Sbjct: 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 25/110 (22%)

Query: 563 LNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEV 622
           L L N    G IP+ +  L ++Q+++L  N + G +P SL + + L VLDL         
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL--------- 473

Query: 623 PTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672
                             N+F+G+IP  L  L  +++L+L+ N++SG++P
Sbjct: 474 ----------------SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 36 IDEEREALLTFKQSLVDEY-GVLSSWGSEDGKRDCCKWRGVRCS 78
          ++++R+ALL FK SL  +  G LSSW       D C W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSS--DPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.4 bits (120), Expect = 3e-06
 Identities = 83/296 (28%), Positives = 124/296 (41%), Gaps = 37/296 (12%)

Query: 350 LCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVIS 409
           L L +N +      L R LSL +L           +++L +L  L +L L+ N     IS
Sbjct: 52  LNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLD-GSENLLNLLPLPSLDLNLNRLRSNIS 110

Query: 410 ETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLIS 469
           E             L + +    L  D      +           P     L+  + L  
Sbjct: 111 E-------------LLELTNLTSLDLDNNNITDI-----------PPLIGLLK--SNLKE 144

Query: 470 LDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGP 529
           LD+S+  I   +P    +L   L  L+LS N +S  LP L    S+   +D+S N     
Sbjct: 145 LDLSDNKIES-LPSPLRNL-PNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI-SD 200

Query: 530 IPP---LPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT 586
           +PP   L S    L+LS N    L     N  +LS L L+NN+    +P+S+G L N++T
Sbjct: 201 LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259

Query: 587 LSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNN 642
           L L NN++     SSL + + LR LDL  N+L   +P      L   ++L L    
Sbjct: 260 LDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 6e-06
 Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 60/199 (30%)

Query: 409 SETFFSNMSNLQMLFLADNSLTLKLSHDW-----VPAFQLKWLSLASCKMGPHFPNWLQT 463
           S+T    +S LQ L    +SL L L   W     VP  Q  W S A C+       W   
Sbjct: 367 SKTLLEEVSALQTL---KSSLGLPLRFGWNGDPCVPQ-QHPW-SGADCQFDSTKGKWF-- 419

Query: 464 QNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISS 523
              +  L + N G+   IP+    L   L  +NLS N I G +P                
Sbjct: 420 ---IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIP---------------- 459

Query: 524 NNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHN 583
                         +  +++               SL +L+L+ N F+G IP+S+G L +
Sbjct: 460 -------------PSLGSIT---------------SLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 584 IQTLSLRNNRLNGELPSSL 602
           ++ L+L  N L+G +P++L
Sbjct: 492 LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 9/74 (12%)

Query: 83  HVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLR 142
           H++ +NL  +         ++G I P+L  +  L  LDLS N F GS +PE +G L+ LR
Sbjct: 443 HLQSINLSGN--------SIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLR 493

Query: 143 YLNLSCGTPSSKIP 156
            LNL+  + S ++P
Sbjct: 494 ILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 267 RNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNK 326
           R++  ++L  N ++G+IP +   + SL +L L+ N   G IP+  G + SL  L L  N 
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 327 LSGQL 331
           LSG++
Sbjct: 502 LSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 3e-05
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 347 LEGLCLYANDITGPIP-DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFT 405
           L+ + L  N I G IP  LG   SL+VL L  N  NG+I +SL  L  L  L+L+GNS +
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 406 G 406
           G
Sbjct: 504 G 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 5e-05
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
           L L    L+G IP     +  L+ ++L+ N + G IP   G++ SL  L L  N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIP 362
            E +  L+      SL  L L  N ++G +P
Sbjct: 483 PESLGQLT------SLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 3/83 (3%)

Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790
           +K LDLS NK+ E++P  + +L  L  L+LS N+L+  +P  +  L +L+ LDLS N  S
Sbjct: 142 LKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS 199

Query: 791 GNIPSSLSLLSGLSVLDLSYNSL 813
            ++P  + LLS L  LDLS NS+
Sbjct: 200 -DLPPEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 28/60 (46%)

Query: 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
           +L  L+L+NNR +     +   L N++ L L  N L    P +      LR LDL  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN 301
           ++++LDLS+N L  + +    F    N+  LDL  N+L    PEAF  + SLR L L+ N
Sbjct: 1   NLKSLDLSNNRL--TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 302 EL 303
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)

Query: 347 LEGLCLYANDITGPIP-DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFT 405
           ++GL L    + G IP D+ +   L+ + L  N + G I  SL  +  LE L L  NSF 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 406 GVISETFFSNMSNLQMLFLADNSLTLKL 433
           G I E+    +++L++L L  NSL+ ++
Sbjct: 480 GSIPES-LGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 754 GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813
            L +L+LS N LT +       L +L  LDLS N+ +   P + S L  L  LDLS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 96/319 (30%), Positives = 135/319 (42%), Gaps = 38/319 (11%)

Query: 527 DGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT 586
           D  +  +  N   LNLS N    LP       SL +L+ +    S    +++  L  + +
Sbjct: 39  DSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPS 97

Query: 587 LSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN 646
           L L  NRL     S L   + L  LDL  N +  ++P  +G    NL  L L  N    +
Sbjct: 98  LDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ES 154

Query: 647 IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYY 706
           +P  L +L  ++ LDLS N++S  +PK  SN S +     S       N+I  +P  I  
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSG------NKISDLPPEIEL 207

Query: 707 FRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLT 766
              L                     + LDLS+N + E +   +++L  L+ L LS N L 
Sbjct: 208 LSAL---------------------EELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE 245

Query: 767 GLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSF 826
            L    IG L +L+ LDLS N    +  SSL  L+ L  LDLS NSLS  +PL       
Sbjct: 246 DLPES-IGNLSNLETLDLSNN--QISSISSLGSLTNLRELDLSGNSLSNALPL--IALLL 300

Query: 827 NASVYAGNLELCGLPLPNK 845
                  NL L    L  K
Sbjct: 301 LLLELLLNLLLTLKALELK 319

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 731 VKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
           +K LDLS+N+L   IP+     L  L  L+LS NNLT + P     L SL  LDLS N+ 
Sbjct: 2   LKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
           +LK L L  N L    + +   L  L+ L L GN+ T +  E  FS + +L+ L L+ N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA-FSGLPSLRSLDLSGNN 59

Query: 429 L 429
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 271 HLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
            LDL  N L      AF+ + +L++L L+ N L    P+ F  + SL  L L  N L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 538 TFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL 594
             L+LS N+ + +PD       +L +L+L+ N  +   P++   L ++++L L  N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 74/257 (28%), Positives = 102/257 (39%), Gaps = 15/257 (5%)

Query: 592 NRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQL 651
           +     LPSSL     L +L     +           +L  L  L L  N    NI   L
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSPSGISSLDGSEN--LLNLLPLPSLDLNLNRLRSNISELL 113

Query: 652 CHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK--SSNPIIGLANEILVVPGYIYYFRY 709
             L  +  LDL  NNI+  IP         ++E   S N I  L + +  +P        
Sbjct: 114 -ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNL--D 169

Query: 710 LDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLI 769
           L    L+         S L  +  LDLS NK+   +P EI  L  L  L+LS N++   +
Sbjct: 170 LSFNDLSDLPKL---LSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-EL 224

Query: 770 PPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNAS 829
              +  LK+L  L+LS N    ++P S+  LS L  LDLS N +S  I     L +    
Sbjct: 225 LSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLREL 282

Query: 830 VYAGNLELCGLPLPNKC 846
             +GN     LPL    
Sbjct: 283 DLSGNSLSNALPLIALL 299

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 68/337 (20%), Positives = 103/337 (30%), Gaps = 104/337 (30%)

Query: 193 LDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSI------ETL 246
           L L    L K+    +++ +L  L+ L L    L       +     ++++      + L
Sbjct: 3   LSLKG-ELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKAL-----ASALRPQPSLKEL 56

Query: 247 DLSDNHLPSSSVYPWL-----FNLSRNILHLDLGFNHLQGSIP---EAFQHMVSLRLLSL 298
            LS N                      +  LDL  N L        E+     SL+ L L
Sbjct: 57  CLSLNET-GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKL 115

Query: 299 ASNELEGGIPKFFG-----NMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLY 353
            +N L     +           +L +L L RN+L G   E                    
Sbjct: 116 NNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE-------------------- 155

Query: 354 ANDITGPIPDLGRFLSLKVLKLGENHLNG----TINKSLSHLFKLETLSLDGNSFT---- 405
              +   +        LK L L  N +       + + L     LE L L+ N  T    
Sbjct: 156 --ALAKALRANR---DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210

Query: 406 GVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQN 465
             ++ET  S  S L++L L DN+LT         A  L                     +
Sbjct: 211 SALAETLASLKS-LEVLNLGDNNLTDA------GAAALA--------------------S 243

Query: 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHI 502
            L+S +IS                  L  L+LS N I
Sbjct: 244 ALLSPNIS------------------LLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 70/321 (21%), Positives = 106/321 (33%), Gaps = 75/321 (23%)

Query: 182 ERLSHLSSLRHLDLSCINLTKSSDWFQVVSQ----LHSLKTLVLRSCYLPPINPSFIWLF 237
             L    SL+ L LS     +     Q + Q       L+ L L    L P     +   
Sbjct: 45  SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
             S+S++ L L++N L                   D G   L   + +            
Sbjct: 105 LRSSSLQELKLNNNGLG------------------DRGLRLLAKGLKD------------ 134

Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSE-LIQNLSSGCTVNSLEGLCLYAND 356
                             +L +L L RN+L G   E L + L +      L+ L L  N 
Sbjct: 135 ---------------LPPALEKLVLGRNRLEGASCEALAKALRANRD---LKELNLANNG 176

Query: 357 ITGP-IPDLGRFL----SLKVLKLGENHLNGTINKSLSHLFK----LETLSLDGNSFTGV 407
           I    I  L   L    +L+VL L  N L      +L+        LE L+L  N+ T  
Sbjct: 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236

Query: 408 ISETFFSNMSN----LQMLFLADNSLTLKLSHD---WVPAF-QLKWLSLASCKMGP---- 455
            +    S + +    L  L L+ N +T   + D    +     L  L L   K G     
Sbjct: 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296

Query: 456 -HFPNWLQTQNQLISLDISNI 475
               + L+  N+L SL + + 
Sbjct: 297 LLAESLLEPGNELESLWVKDD 317

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 20/238 (8%)

Query: 187 LSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETL 246
           L++L  LDL   N+T                 L         I      L NL  +++ L
Sbjct: 115 LTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIESLPSPLRNL-PNLKNL 168

Query: 247 DLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGG 306
           DLS N L   S  P L +   N+ +LDL  N +   +P   + + +L  L L++N +   
Sbjct: 169 DLSFNDL---SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE- 223

Query: 307 IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLS-------SGCTVNSLEGLCLYANDITG 359
           +     N+ +L+ L L  NKL   L E I NLS       S   ++S+  L    N    
Sbjct: 224 LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLREL 282

Query: 360 PIPDLGRFLSLKVLKLGENHLNGTINKSLS-HLFKLETLSLDGNSFTGVISETFFSNM 416
            +       +L ++ L    L   +N  L+    +L+  S+  N+      ET     
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEA 340

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	927
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN03150	623	hypothetical protein; Provisional	99.54
PLN03150	623	hypothetical protein; Provisional	99.46
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.18
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.03
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.76
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.71
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.64
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.63
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.29
KOG4341	483	consensus F-box protein containing LRR [General fu	98.23
KOG4341	483	consensus F-box protein containing LRR [General fu	98.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.73
PRK15386	426	type III secretion protein GogB; Provisional	97.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.69
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.59
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.59
PRK15386	426	type III secretion protein GogB; Provisional	97.51
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.89
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.85
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.31
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.22
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.01
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.88
KOG4308	478	consensus LRR-containing protein [Function unknown	92.45
KOG4308	478	consensus LRR-containing protein [Function unknown	92.08
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.2
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.3
smart00370	26	LRR Leucine-rich repeats, outliers.	86.52
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.52
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.16
smart00370	26	LRR Leucine-rich repeats, outliers.	86.16
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	82.23
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.38

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4e-71  Score=692.54  Aligned_cols=583  Identities=35%  Similarity=0.538  Sum_probs=403.9

Q ss_pred             CHHHHHHHHHhhhcCcCCCCCcCCCCCCCCCCCCccccceeecCCCCCEEEEECCCCchhhhhccccccccCccccCCCC
Q 047797           36 IDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRG  115 (927)
Q Consensus        36 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~  115 (927)
                      .++|++||++||+++.+|.+.+.+|+   .+++||.|.||+|+. .++|+.|+|++        +.++|.+++++..+++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~--------~~i~~~~~~~~~~l~~   94 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG--------KNISGKISSAIFRLPY   94 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC--------CCccccCChHHhCCCC
Confidence            45899999999999988888899997   467999999999974 57999999998        7889999999999999


Q ss_pred             CCeeeCCCCCCCCCCCCcccc-CCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEE
Q 047797          116 LRHLDLSKNDFGGSPVPEFIG-SLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLD  194 (927)
Q Consensus       116 L~~L~Ls~n~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~  194 (927)
                      |++|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+|.  +.+++|++|++                        
T Consensus        95 L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L------------------------  147 (968)
T PLN00113         95 IQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL------------------------  147 (968)
T ss_pred             CCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC------------------------
Confidence            99999999999875 776654 888899999988888777663  12222222222                        


Q ss_pred             CCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEc
Q 047797          195 LSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDL  274 (927)
Q Consensus       195 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~L  274 (927)
                       +                          +|.+++..|  ..+.++ ++|++|++++|.+.+ .+|..+.++. +|++|++
T Consensus       148 -s--------------------------~n~~~~~~p--~~~~~l-~~L~~L~L~~n~l~~-~~p~~~~~l~-~L~~L~L  195 (968)
T PLN00113        148 -S--------------------------NNMLSGEIP--NDIGSF-SSLKVLDLGGNVLVG-KIPNSLTNLT-SLEFLTL  195 (968)
T ss_pred             -c--------------------------CCcccccCC--hHHhcC-CCCCEEECccCcccc-cCChhhhhCc-CCCeeec
Confidence             2                          222222222  223333 445555555555444 4444444444 4455555


Q ss_pred             cCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccC
Q 047797          275 GFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYA  354 (927)
Q Consensus       275 s~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~  354 (927)
                      ++|.+.+.+|..++++++|++|++++|++.+.+|..++++++|++|++++|.+++..|..                    
T Consensus       196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--------------------  255 (968)
T PLN00113        196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--------------------  255 (968)
T ss_pred             cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh--------------------
Confidence            544444444444444444444444444444444444444444444444444444444444                    


Q ss_pred             CCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceeccc
Q 047797          355 NDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLS  434 (927)
Q Consensus       355 n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  434 (927)
                               ++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+.++++|+.|++++|.+.+   
T Consensus       256 ---------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~---  322 (968)
T PLN00113        256 ---------LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTG---  322 (968)
T ss_pred             ---------HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCC---
Confidence                     44444555555555555555555555555555555555555544444 34445555555554444433   


Q ss_pred             CCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCC
Q 047797          435 HDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKS  514 (927)
Q Consensus       435 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  514 (927)
                                           ..|.++..+++|+.|++++|.+.+.+|..+...                          
T Consensus       323 ---------------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~--------------------------  355 (968)
T PLN00113        323 ---------------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH--------------------------  355 (968)
T ss_pred             ---------------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCC--------------------------
Confidence                                 233334444444445544444444444333211                          


Q ss_pred             CCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc
Q 047797          515 DDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR  593 (927)
Q Consensus       515 ~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  593 (927)
                                          .+|+.|++++|++++ +|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus       356 --------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~  415 (968)
T PLN00113        356 --------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS  415 (968)
T ss_pred             --------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence                                122333333333333 44455556677777777777777777777777788888888888


Q ss_pred             ccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccch
Q 047797          594 LNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK  673 (927)
Q Consensus       594 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  673 (927)
                      +++.+|..|..+++|+.|++++|.+++.+|..+. .+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|.
T Consensus       416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~  493 (968)
T PLN00113        416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPR  493 (968)
T ss_pred             eeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccCh
Confidence            8777777777888888888888888777777665 57888888888888887777655 457899999999999988888


Q ss_pred             hhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCcccccccc
Q 047797          674 CFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLV  753 (927)
Q Consensus       674 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~  753 (927)
                      .+.+++.|                                                  +.|+|++|++++.+|..+.+++
T Consensus       494 ~~~~l~~L--------------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~  523 (968)
T PLN00113        494 KLGSLSEL--------------------------------------------------MQLKLSENKLSGEIPDELSSCK  523 (968)
T ss_pred             hhhhhhcc--------------------------------------------------CEEECcCCcceeeCChHHcCcc
Confidence            77765554                                                  8999999999999999999999


Q ss_pred             CCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCC
Q 047797          754 GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAG  833 (927)
Q Consensus       754 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~  833 (927)
                      +|++|+|++|.+++.+|..++++++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|..+++.++...++.|
T Consensus       524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~  603 (968)
T PLN00113        524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAG  603 (968)
T ss_pred             CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC
Q 047797          834 NLELCGLP  841 (927)
Q Consensus       834 n~~lc~~~  841 (927)
                      |+.+||.+
T Consensus       604 n~~lc~~~  611 (968)
T PLN00113        604 NIDLCGGD  611 (968)
T ss_pred             CccccCCc
Confidence            99999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.7e-56  Score=557.57  Aligned_cols=490  Identities=34%  Similarity=0.495  Sum_probs=340.7

Q ss_pred             cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797          241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL  320 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  320 (927)
                      ++|+.|+|++|++++ .+|..++...++|++|++++|++++.+|.  +.+++|++|++++|.+.+.+|..++++++|++|
T Consensus        93 ~~L~~L~Ls~n~~~~-~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  169 (968)
T PLN00113         93 PYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCEEECCCCccCC-cCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence            444444444444444 44444442222455555555544444442  234455555555555554445555555555555


Q ss_pred             eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEec
Q 047797          321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSL  399 (927)
Q Consensus       321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  399 (927)
                      ++++|.+.+..|..+.+++      +|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|..++++++|++|++
T Consensus       170 ~L~~n~l~~~~p~~~~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLT------SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             ECccCcccccCChhhhhCc------CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            5555555544555454444      555555555555444444 455555555555555555555555555555555555


Q ss_pred             CCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCC
Q 047797          400 DGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISD  479 (927)
Q Consensus       400 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~  479 (927)
                      ++|.+.+.+|. .+.++++|++|++++|.+.+..+..+..+.+|++|++++|.+.+.+|.++..+++|+.|++++|.+.+
T Consensus       244 ~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        244 VYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG  322 (968)
T ss_pred             cCceeccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence            55555554444 34555555555555555544333333333333334444444444445555555555555555554444


Q ss_pred             CccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCC
Q 047797          480 TIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFN  558 (927)
Q Consensus       480 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~  558 (927)
                      ..|..+                         ..                     +++|+.|++++|++++ +|..+..++
T Consensus       323 ~~~~~~-------------------------~~---------------------l~~L~~L~L~~n~l~~~~p~~l~~~~  356 (968)
T PLN00113        323 KIPVAL-------------------------TS---------------------LPRLQVLQLWSNKFSGEIPKNLGKHN  356 (968)
T ss_pred             cCChhH-------------------------hc---------------------CCCCCEEECcCCCCcCcCChHHhCCC
Confidence            333322                         22                     2346666667777766 778888999


Q ss_pred             CCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEc
Q 047797          559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRL  638 (927)
Q Consensus       559 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L  638 (927)
                      +|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+. .+++|+.|++
T Consensus       357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L  435 (968)
T PLN00113        357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDI  435 (968)
T ss_pred             CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEEC
Confidence            999999999999999999999999999999999999999999999999999999999999999998887 7999999999


Q ss_pred             cCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeee
Q 047797          639 KSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWK  718 (927)
Q Consensus       639 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (927)
                      ++|.+++.+|..+..+++|+.|++++|++.+.+|..+.                                          
T Consensus       436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------------------------------------------  473 (968)
T PLN00113        436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------------------------------------------  473 (968)
T ss_pred             cCCcccCccChhhccCCCCcEEECcCceeeeecCcccc------------------------------------------
Confidence            99999999999999999999999999999988876542                                          


Q ss_pred             cccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCcccc
Q 047797          719 GSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLS  798 (927)
Q Consensus       719 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~  798 (927)
                               .++|+.||+++|++++.+|..+.++++|++|+|++|++++.+|+.+.++++|++|+|++|++++.+|..+.
T Consensus       474 ---------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  544 (968)
T PLN00113        474 ---------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS  544 (968)
T ss_pred             ---------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence                     13459999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCeEeCcCCcCcccCCCC-CcCCCCcccccCCCCCCC
Q 047797          799 LLSGLSVLDLSYNSLSGKIPLG-TQLQSFNASVYAGNLELC  838 (927)
Q Consensus       799 ~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc  838 (927)
                      .+++|++||+++|+++|.+|.. ..+..+....+.+|+..+
T Consensus       545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            9999999999999999999964 234445555566676544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-38  Score=332.22  Aligned_cols=382  Identities=26%  Similarity=0.250  Sum_probs=273.4

Q ss_pred             CcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCC-CCCCCEEEccCCcCCCcchhhhhccCCCC
Q 047797          317 LNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGR-FLSLKVLKLGENHLNGTINKSLSHLFKLE  395 (927)
Q Consensus       317 L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  395 (927)
                      -+.|++++|++....+..|.+++      +|+++++.+|.++ .+|.++. ..+|+.|+|.+|.|+..-.+.++.++.|+
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~------nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLP------NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCC------cceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence            45577777777777777777777      7777777777776 4455443 44599999999999988888899999999


Q ss_pred             EEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCC
Q 047797          396 TLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNI  475 (927)
Q Consensus       396 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n  475 (927)
                      .|||+.|.++ .+|...|..-.++++|+|++|+|+......|..+.+|..|.|+.|.++...+..|+++++|+.|+|..|
T Consensus       153 slDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  153 SLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence            9999999987 667667777788999999999998888888887777888888887777777777777777777777776


Q ss_pred             ccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccc
Q 047797          476 GISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL  555 (927)
Q Consensus       476 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~  555 (927)
                      +|...-.                                                                     -.|.
T Consensus       232 ~irive~---------------------------------------------------------------------ltFq  242 (873)
T KOG4194|consen  232 RIRIVEG---------------------------------------------------------------------LTFQ  242 (873)
T ss_pred             ceeeehh---------------------------------------------------------------------hhhc
Confidence            6531100                                                                     1233


Q ss_pred             cCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcE
Q 047797          556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII  635 (927)
Q Consensus       556 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~  635 (927)
                      .+++|+.|.|..|.++..-...|..+.++++|+|..|++...-..++.++++|+.|++|+|.|...-+..+. .+++|++
T Consensus       243 gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~  321 (873)
T KOG4194|consen  243 GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKE  321 (873)
T ss_pred             CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-hccccee
Confidence            445555555555555554455555666666666666666655555666666666666666666443333333 4566666


Q ss_pred             EEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEE
Q 047797          636 LRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLL  715 (927)
Q Consensus       636 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (927)
                      |+|++|+++...+..|..+..|++|.|++|+++..-...|..+++|                                  
T Consensus       322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL----------------------------------  367 (873)
T KOG4194|consen  322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL----------------------------------  367 (873)
T ss_pred             EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh----------------------------------
Confidence            6666666666666666666777777777777664444444443333                                  


Q ss_pred             eeecccccccccccceeEEEccCCcccccCcc---ccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCccc
Q 047797          716 TWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPE---EITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN  792 (927)
Q Consensus       716 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  792 (927)
                                      +.|||++|.++..|.+   .|.++++|+.|+|.+|+|..+.-.+|..+++||+|||.+|.|-.+
T Consensus       368 ----------------~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  368 ----------------HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI  431 (873)
T ss_pred             ----------------hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence                            6777777777765543   477888999999999999877777899999999999999999888


Q ss_pred             CCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCc
Q 047797          793 IPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFN  827 (927)
Q Consensus       793 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~  827 (927)
                      -|..|..+ .|+.|-+..-.+.|.|...+..+|+.
T Consensus       432 q~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~  465 (873)
T KOG4194|consen  432 QPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLY  465 (873)
T ss_pred             cccccccc-hhhhhhhcccceEEeccHHHHHHHHH
Confidence            89999988 89999888888889888766555553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-37  Score=326.28  Aligned_cols=382  Identities=25%  Similarity=0.265  Sum_probs=250.1

Q ss_pred             cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797          241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL  320 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  320 (927)
                      ..-..||.+++.+....-..-.+-+++.-+.||+++|++....+..|.++++|+++++.+|.++ .+|.......+|+.|
T Consensus        52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L  130 (873)
T KOG4194|consen   52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL  130 (873)
T ss_pred             CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence            3445667777766321100111223336778999999999999999999999999999999998 578777777789999


Q ss_pred             eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEec
Q 047797          321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSL  399 (927)
Q Consensus       321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  399 (927)
                      +|.+|.|+....+.+..++      .|+.|||+.|.++..... |..-.++++|+|++|.|+..-...|..+.+|..|.|
T Consensus       131 ~L~~N~I~sv~se~L~~l~------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  131 DLRHNLISSVTSEELSALP------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             eeeccccccccHHHHHhHh------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            9999999999999999998      999999999999876655 888889999999999999888888999999999999


Q ss_pred             CCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCC
Q 047797          400 DGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISD  479 (927)
Q Consensus       400 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~  479 (927)
                      +.|+++ .+|...|.++++|+.|+|..|+|.....-.|.++++|+.|.+..|.+.......|..+.++++|+|+.|++..
T Consensus       205 srNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  205 SRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             ccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence            999998 6777789999999999999999987767777777777777777777766666666666666666666665543


Q ss_pred             CccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCC
Q 047797          480 TIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFN  558 (927)
Q Consensus       480 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~  558 (927)
                      .-..|+++.                                              ..|+.|+++.|.|.. -++++..++
T Consensus       284 vn~g~lfgL----------------------------------------------t~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  284 VNEGWLFGL----------------------------------------------TSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhccccccc----------------------------------------------chhhhhccchhhhheeecchhhhcc
Confidence            333222221                                              122222333333333 223344444


Q ss_pred             CCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCCh--hhhhcCccCcEE
Q 047797          559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPT--CVGGSLQNLIIL  636 (927)
Q Consensus       559 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~~l~~L~~L  636 (927)
                      +|++|+|++|+++...+.+|..+..|++|+|++|.++..-...|..+++|++|||++|.++..+.+  ..+..+++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            455555555555544444444455555555555555444444444445555555555544332221  111234444444


Q ss_pred             EccCcccceecCccccCCCCCCEEEccccccccccchhhc
Q 047797          637 RLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFS  676 (927)
Q Consensus       637 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  676 (927)
                      ++.+|++..+.-.+|.+++.|++|||.+|.|..+-|..|.
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe  437 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE  437 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence            4444444433334444444444444444444444444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.1e-39  Score=324.14  Aligned_cols=491  Identities=23%  Similarity=0.340  Sum_probs=278.5

Q ss_pred             CcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCc
Q 047797          190 LRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNI  269 (927)
Q Consensus       190 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L  269 (927)
                      |..+++++|.+..   +...+.++..|.+|++..|++...+|.   ++.+ ..++.++.+.|+++  .+|+.+.... ++
T Consensus        47 l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~~lp~a---ig~l-~~l~~l~vs~n~ls--~lp~~i~s~~-~l  116 (565)
T KOG0472|consen   47 LQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLSQLPAA---IGEL-EALKSLNVSHNKLS--ELPEQIGSLI-SL  116 (565)
T ss_pred             hhhhhhccCchhh---ccHhhhcccceeEEEeccchhhhCCHH---HHHH-HHHHHhhcccchHh--hccHHHhhhh-hh
Confidence            3344444444433   223455555666666666666555542   4444 55666666666663  5666666666 66


Q ss_pred             cEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccE
Q 047797          270 LHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEG  349 (927)
Q Consensus       270 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~  349 (927)
                      ++++.++|.+. .+|++++.+-.|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|..+. ++      .|++
T Consensus       117 ~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~------~L~~  187 (565)
T KOG0472|consen  117 VKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK------RLKH  187 (565)
T ss_pred             hhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HH------HHHh
Confidence            66666666665 45555666666666666666666 3555566666666666666666655555444 55      6666


Q ss_pred             EEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcc
Q 047797          350 LCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSL  429 (927)
Q Consensus       350 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  429 (927)
                      ||...|.+...+|.++.+.+|+-|+|..|++. ..| .|.+|..|+++++..|++. .+|.+...+++++..||+.+|++
T Consensus       188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  188 LDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             cccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc
Confidence            66666666655555666667777777777666 344 5666666777777766665 55665556666777777777766


Q ss_pred             eecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhc-cccceeecccccccCCCCC
Q 047797          430 TLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLS-IELFFLNLSNNHISGKLPD  508 (927)
Q Consensus       430 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~  508 (927)
                      +. .|....-+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+...--+.+.... .-|++|.=   ++...-+.
T Consensus       265 ke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS  338 (565)
T KOG0472|consen  265 KE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLS  338 (565)
T ss_pred             cc-CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCC
Confidence            63 2233334444445555544444 344455555 566666666654321111000000 00111110   00000000


Q ss_pred             ccccCCCCcEEeccCCccCCCCCCC--CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccE
Q 047797          509 LSVLKSDDIVIDISSNNFDGPIPPL--PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT  586 (927)
Q Consensus       509 ~~~~~~~l~~l~l~~n~~~~~~~~~--~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  586 (927)
                      .. .-..-...+    ...+..|..  ..+.+.|++++-+++.+|+..+.-..                     -.-...
T Consensus       339 ~s-e~~~e~~~t----~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~---------------------~~~Vt~  392 (565)
T KOG0472|consen  339 QS-EGGTETAMT----LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK---------------------SEIVTS  392 (565)
T ss_pred             CC-cccccccCC----CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh---------------------hcceEE
Confidence            00 000000000    000011110  22344455555555555443222111                     111445


Q ss_pred             EEcccccccccCCccccCCCCCC-EEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccc
Q 047797          587 LSLRNNRLNGELPSSLKNCSKLR-VLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLN  665 (927)
Q Consensus       587 L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N  665 (927)
                      .+++.|++. ++|..+..+..+. .+++++|.+ +.+|..+. .+++|..|+|++|.+. .+|..++.+..|+.||+|.|
T Consensus       393 VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  393 VNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFN  468 (565)
T ss_pred             EecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheeccccc
Confidence            555555555 4455444444433 334444444 55555554 5777777777766665 66777777888888888888


Q ss_pred             ccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccC
Q 047797          666 NISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAI  745 (927)
Q Consensus       666 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~  745 (927)
                      +|. .+|.++..+..+                                                  +.+-.++|++....
T Consensus       469 rFr-~lP~~~y~lq~l--------------------------------------------------Etllas~nqi~~vd  497 (565)
T KOG0472|consen  469 RFR-MLPECLYELQTL--------------------------------------------------ETLLASNNQIGSVD  497 (565)
T ss_pred             ccc-cchHHHhhHHHH--------------------------------------------------HHHHhccccccccC
Confidence            876 677766554333                                                  55556678887777


Q ss_pred             ccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCc
Q 047797          746 PEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS  790 (927)
Q Consensus       746 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  790 (927)
                      |+.+.++.+|+.|||.+|.+. .+|+.++++++|++|++++|.+.
T Consensus       498 ~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  498 PSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            777999999999999999998 67889999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.5e-38  Score=316.68  Aligned_cols=475  Identities=27%  Similarity=0.363  Sum_probs=286.6

Q ss_pred             CCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCC
Q 047797          215 SLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLR  294 (927)
Q Consensus       215 ~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~  294 (927)
                      .|+.+.++.|.+....++   +.++ ..|.+|++++|+++  +.|+.++.+. .++.++.++|++. .+|+.++.+.+|+
T Consensus        46 ~l~~lils~N~l~~l~~d---l~nL-~~l~vl~~~~n~l~--~lp~aig~l~-~l~~l~vs~n~ls-~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLRED---LKNL-ACLTVLNVHDNKLS--QLPAAIGELE-ALKSLNVSHNKLS-ELPEQIGSLISLV  117 (565)
T ss_pred             chhhhhhccCchhhccHh---hhcc-cceeEEEeccchhh--hCCHHHHHHH-HHHHhhcccchHh-hccHHHhhhhhhh
Confidence            455666666666555442   3444 55666666666663  5566666665 6666666666665 4555666666666


Q ss_pred             EEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEE
Q 047797          295 LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLK  374 (927)
Q Consensus       295 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~  374 (927)
                      .+++++|++. ..|+.++.+..|+.++..+|+++. .|+.+..+.      ++..+++.+|++....|..-+++.|++||
T Consensus       118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~------~l~~l~~~~n~l~~l~~~~i~m~~L~~ld  189 (565)
T KOG0472|consen  118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLS------KLSKLDLEGNKLKALPENHIAMKRLKHLD  189 (565)
T ss_pred             hhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHH------HHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence            6666666665 344455555566666666666553 334444444      55555555555555554422355555555


Q ss_pred             ccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCC
Q 047797          375 LGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG  454 (927)
Q Consensus       375 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~  454 (927)
                      ...|.+. .+|+.++.+.+|+.|++..|++. .+|+  |.++..|++++++.|++...+                     
T Consensus       190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lp---------------------  244 (565)
T KOG0472|consen  190 CNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLP---------------------  244 (565)
T ss_pred             cchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhH---------------------
Confidence            5555554 44445555555555555555554 3442  455555555555555544222                     


Q ss_pred             CCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCC
Q 047797          455 PHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLP  534 (927)
Q Consensus       455 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  534 (927)
                         .+..++++++..||+.+|++. ..|+.+.-. .+|++||+|+|.+++..+.. +.+ .                   
T Consensus       245 ---ae~~~~L~~l~vLDLRdNklk-e~Pde~clL-rsL~rLDlSNN~is~Lp~sL-gnl-h-------------------  298 (565)
T KOG0472|consen  245 ---AEHLKHLNSLLVLDLRDNKLK-EVPDEICLL-RSLERLDLSNNDISSLPYSL-GNL-H-------------------  298 (565)
T ss_pred             ---HHHhcccccceeeeccccccc-cCchHHHHh-hhhhhhcccCCccccCCccc-ccc-e-------------------
Confidence               222335566666666666654 344444322 24555555555554332221 111 2                   


Q ss_pred             CCCceEeCcCCCCCCCCcccccCCC---CCEEE-------ccCcc---------ccccCCCcccccCcccEEEccccccc
Q 047797          535 SNSTFLNLSKNKFSGLPDCWLNFNS---LSILN-------LANNR---------FSGKIPDSMGFLHNIQTLSLRNNRLN  595 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~lp~~~~~l~~---L~~L~-------Ls~n~---------l~~~~~~~~~~l~~L~~L~L~~N~l~  595 (927)
                        |+.|.+.+|.+..+-..+-+...   |++|.       ++.-.         ..+..| ......+.+.|++++-+++
T Consensus       299 --L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  299 --LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             --eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccccccc
Confidence              23333333433332211111100   11110       00000         000111 1223457788888888888


Q ss_pred             ccCCccccCCC--CCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccch
Q 047797          596 GELPSSLKNCS--KLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK  673 (927)
Q Consensus       596 ~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  673 (927)
                      ....+.|..-.  -....+++.|++ .++|..+. .+..+.+.-+.+|+..+-+|..++.+++|..|+|++|.+. .+|.
T Consensus       376 ~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~-~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~  452 (565)
T KOG0472|consen  376 LVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLV-ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE  452 (565)
T ss_pred             cCCHHHHHHhhhcceEEEecccchH-hhhhhhhH-HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence            54444443322  367889999998 67887766 4555555444444445578888999999999999988876 6777


Q ss_pred             hhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCcccccccc
Q 047797          674 CFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLV  753 (927)
Q Consensus       674 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~  753 (927)
                      .++.+..+                                                  +.||+|+|++ ..+|..+-.+.
T Consensus       453 e~~~lv~L--------------------------------------------------q~LnlS~NrF-r~lP~~~y~lq  481 (565)
T KOG0472|consen  453 EMGSLVRL--------------------------------------------------QTLNLSFNRF-RMLPECLYELQ  481 (565)
T ss_pred             hhhhhhhh--------------------------------------------------heeccccccc-ccchHHHhhHH
Confidence            77665444                                                  9999999999 56888888888


Q ss_pred             CCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797          754 GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS  814 (927)
Q Consensus       754 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  814 (927)
                      .++.+-.++|++....|+.+.++.+|..|||.+|.+. .+|..++++++|+.|++++|||.
T Consensus       482 ~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  482 TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8888888889999888888999999999999999998 78999999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-35  Score=327.82  Aligned_cols=459  Identities=26%  Similarity=0.320  Sum_probs=283.7

Q ss_pred             EEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCC
Q 047797          246 LDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN  325 (927)
Q Consensus       246 L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  325 (927)
                      +|++..++.  .+|..+...- .++.|+++.|.+-...-+...+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|
T Consensus         3 vd~s~~~l~--~ip~~i~~~~-~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    3 VDASDEQLE--LIPEQILNNE-ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN   78 (1081)
T ss_pred             cccccccCc--ccchhhccHH-HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence            456666653  5666666655 4777777777654322233334444666666666665 45555556666666666666


Q ss_pred             CCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccc
Q 047797          326 KLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFT  405 (927)
Q Consensus       326 ~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  405 (927)
                      .+.. .|..                             ..++.+|+++.|.+|.+. ..|..+..+++|++|+++.|++.
T Consensus        79 ~i~~-vp~s-----------------------------~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~  127 (1081)
T KOG0618|consen   79 YIRS-VPSS-----------------------------CSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG  127 (1081)
T ss_pred             hHhh-Cchh-----------------------------hhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC
Confidence            5542 2333                             334444455555544444 44445555555555555555543


Q ss_pred             cccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchH
Q 047797          406 GVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWF  485 (927)
Q Consensus       406 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~  485 (927)
                       .+|. .+..++.++.+..++|......    . -..++.+++..+.+.+.++..+..+..  .||+.+|.+. ...   
T Consensus       128 -~~Pl-~i~~lt~~~~~~~s~N~~~~~l----g-~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---  194 (1081)
T KOG0618|consen  128 -PIPL-VIEVLTAEEELAASNNEKIQRL----G-QTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---  194 (1081)
T ss_pred             -CCch-hHHhhhHHHHHhhhcchhhhhh----c-cccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---
Confidence             3333 2444444445555544111000    0 011445555555555555544444444  4666666554 111   


Q ss_pred             HhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCC-CCCCceEeCcCCCCCCCCcccccCCCCCEEE
Q 047797          486 WDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL-PSNSTFLNLSKNKFSGLPDCWLNFNSLSILN  564 (927)
Q Consensus       486 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~-~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~  564 (927)
                      ...+..|+.+....|+++..    ....++++.++.+.|.++...+.. +.+++++++++|+++.+|+++..+.+|+.++
T Consensus       195 ls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~  270 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALN  270 (1081)
T ss_pred             hhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEec
Confidence            12223566666666655421    123455666777777666444432 6677888888888888887777888888888


Q ss_pred             ccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhh-----------------
Q 047797          565 LANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVG-----------------  627 (927)
Q Consensus       565 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----------------  627 (927)
                      ..+|+++ .+|..+....+|+.|.+..|.+. -+|.....+++|++|+|..|++ +.+|..+.                 
T Consensus       271 ~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l  347 (1081)
T KOG0618|consen  271 ANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKL  347 (1081)
T ss_pred             ccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccc
Confidence            8888875 56666667777777777777777 4555566677777777777777 45554332                 


Q ss_pred             --------hcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccc
Q 047797          628 --------GSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV  699 (927)
Q Consensus       628 --------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  699 (927)
                              ...+.|+.|.+.+|.++...-..+.+...|+.|+|++|++......++.++..|                  
T Consensus       348 ~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L------------------  409 (1081)
T KOG0618|consen  348 STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL------------------  409 (1081)
T ss_pred             cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHh------------------
Confidence                    234567777788888877766677788888888888888864433445554444                  


Q ss_pred             ccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCC
Q 047797          700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL  779 (927)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  779 (927)
                                                      +.|+||+|+++. +|..+.++..|++|...+|++.. .| .+.++++|
T Consensus       410 --------------------------------eeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL  454 (1081)
T KOG0618|consen  410 --------------------------------EELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQL  454 (1081)
T ss_pred             --------------------------------HHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcc
Confidence                                            889999999965 66888889999999999999884 45 78889999


Q ss_pred             CeEeCCCCcCcccC-CccccCCCCCCeEeCcCCcC
Q 047797          780 DFLDLSRNHFSGNI-PSSLSLLSGLSVLDLSYNSL  813 (927)
Q Consensus       780 ~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l  813 (927)
                      +.+|+|.|+++... |..... ++|++||+++|..
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            99999999987543 333332 7899999999974

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=9.5e-35  Score=322.02  Aligned_cols=503  Identities=23%  Similarity=0.252  Sum_probs=391.9

Q ss_pred             EEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcc-hhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEE
Q 047797          219 LVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVY-PWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS  297 (927)
Q Consensus       219 L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  297 (927)
                      ++++.+.++-++.   .+... ..+..|+++.|.+-  ..| +.+.... +|+.||+++|++. ..|..+..+.+|+.|+
T Consensus         3 vd~s~~~l~~ip~---~i~~~-~~~~~ln~~~N~~l--~~pl~~~~~~v-~L~~l~lsnn~~~-~fp~~it~l~~L~~ln   74 (1081)
T KOG0618|consen    3 VDASDEQLELIPE---QILNN-EALQILNLRRNSLL--SRPLEFVEKRV-KLKSLDLSNNQIS-SFPIQITLLSHLRQLN   74 (1081)
T ss_pred             cccccccCcccch---hhccH-HHHHhhhccccccc--cCchHHhhhee-eeEEeeccccccc-cCCchhhhHHHHhhcc
Confidence            5667777666554   34444 44899999999774  333 3444444 7999999999987 7888899999999999


Q ss_pred             ccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccC
Q 047797          298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGE  377 (927)
Q Consensus       298 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~  377 (927)
                      ++.|.+. ..|.+..++.+|+++.|.+|.+. ..|..+..+.      +|+.|+++.|.+...++.+..++.++.+..++
T Consensus        75 ~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lk------nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~  146 (1081)
T KOG0618|consen   75 LSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELK------NLQYLDLSFNHFGPIPLVIEVLTAEEELAASN  146 (1081)
T ss_pred             cchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhh------cccccccchhccCCCchhHHhhhHHHHHhhhc
Confidence            9999998 56788899999999999999876 6788888888      99999999999986666688999999999999


Q ss_pred             CcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCC
Q 047797          378 NHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHF  457 (927)
Q Consensus       378 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~  457 (927)
                      |.-..    .++... ++.+++..|.+.+.++.+ ...++.  .|+|.+|.+.   ..+...+.+|+.+....|++... 
T Consensus       147 N~~~~----~lg~~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l-  214 (1081)
T KOG0618|consen  147 NEKIQ----RLGQTS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL-  214 (1081)
T ss_pred             chhhh----hhcccc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE-
Confidence            93221    233332 888899999888777653 444544  6999999987   23456667788887777766432 


Q ss_pred             ChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCC--CC
Q 047797          458 PNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL--PS  535 (927)
Q Consensus       458 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~--~~  535 (927)
                         --.-++++.|+.++|.++...+..   ...+|++++++.|++++.. ++...+.+++.++...|.++...-..  ..
T Consensus       215 ---~~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~  287 (1081)
T KOG0618|consen  215 ---EISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRIT  287 (1081)
T ss_pred             ---EecCcchheeeeccCcceeecccc---ccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhh
Confidence               123578999999999887443332   2358999999999998655 88899999999999999995432222  56


Q ss_pred             CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCc-ccEEEcccccccccCCccccCCCCCCEEecC
Q 047797          536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHN-IQTLSLRNNRLNGELPSSLKNCSKLRVLDLR  614 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  614 (927)
                      +|+.|++..|+++.+|.....+++|++|+|..|++....+..+.-... |+.|+.+.|++.......=...+.|+.|++.
T Consensus       288 ~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  288 SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             hHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence            889999999999999998888999999999999998443333443433 7888888888874332222346779999999


Q ss_pred             CCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccc
Q 047797          615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLA  694 (927)
Q Consensus       615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  694 (927)
                      +|.+++..-..+. +..+|++|+|++|++.......+.++..|++|+||+|+++ .+|.++.++..|             
T Consensus       368 nN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L-------------  432 (1081)
T KOG0618|consen  368 NNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL-------------  432 (1081)
T ss_pred             cCcccccchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh-------------
Confidence            9999876544454 6899999999999998655567899999999999999998 778888877666             


Q ss_pred             cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccC-Cccc
Q 047797          695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLI-PPKI  773 (927)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l  773 (927)
                                                           ++|..-+|++.. .| ++.++++|+.+|+|.|+|+... |...
T Consensus       433 -------------------------------------~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~  473 (1081)
T KOG0618|consen  433 -------------------------------------HTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEAL  473 (1081)
T ss_pred             -------------------------------------HHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhC
Confidence                                                 788888898854 56 8999999999999999998653 4433


Q ss_pred             cCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC
Q 047797          774 GQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN  811 (927)
Q Consensus       774 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  811 (927)
                      . -++|++|||++|.-.......|..+.++..+++.-|
T Consensus       474 p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  474 P-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             C-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            3 389999999999965566677888888888888877

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.6e-32  Score=288.47  Aligned_cols=369  Identities=25%  Similarity=0.314  Sum_probs=297.2

Q ss_pred             cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797          241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL  320 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  320 (927)
                      +-.+-.|+++|.++|...|..+.++. .++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt-~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMT-QMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhh-heeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            45667788888888778888888888 8899988888877 68888999999999999999887 345567788889999


Q ss_pred             eCCCCCCC-CchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEec
Q 047797          321 YLPRNKLS-GQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSL  399 (927)
Q Consensus       321 ~L~~n~l~-~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  399 (927)
                      ++..|++. .-+|..+..+.      .|+.|||++|++...+..+..-.++-+|+||+|+|..+...-|.+++.|-.|||
T Consensus        84 ~~R~N~LKnsGiP~diF~l~------dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLK------DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL  157 (1255)
T ss_pred             hhhccccccCCCCchhcccc------cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence            99888774 34566666677      888889999888866555888888888999999988666666788888888999


Q ss_pred             CCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeeccccc-CCCCCChhhhcCccccEEEccCCccC
Q 047797          400 DGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCK-MGPHFPNWLQTQNQLISLDISNIGIS  478 (927)
Q Consensus       400 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~L~~L~Ls~n~l~  478 (927)
                      ++|++. .+|+ ....+..|++|+|++|++...-...+..+.+|+.|.+++.+ -...+|..+..+.+|..+|+|.|.+.
T Consensus       158 S~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  158 SNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             ccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence            999887 4555 37788888999999988776555555666777888887765 33467888888888999999988885


Q ss_pred             CCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCC
Q 047797          479 DTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFN  558 (927)
Q Consensus       479 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~  558 (927)
                       .+|+.+.... +|+.|+||+|+++..--..                      ....++++|++++|+++.+|+++..++
T Consensus       236 -~vPecly~l~-~LrrLNLS~N~iteL~~~~----------------------~~W~~lEtLNlSrNQLt~LP~avcKL~  291 (1255)
T KOG0444|consen  236 -IVPECLYKLR-NLRRLNLSGNKITELNMTE----------------------GEWENLETLNLSRNQLTVLPDAVCKLT  291 (1255)
T ss_pred             -cchHHHhhhh-hhheeccCcCceeeeeccH----------------------HHHhhhhhhccccchhccchHHHhhhH
Confidence             6777776653 7888888888776321110                      114578899999999999999999999


Q ss_pred             CCCEEEccCcccc-ccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEE
Q 047797          559 SLSILNLANNRFS-GKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILR  637 (927)
Q Consensus       559 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~  637 (927)
                      +|+.|.+.+|+++ .-+|..++.+.+|+++..++|++. ..|+.++.|.+|+.|.|++|++ -.+|..+. -++.|+.||
T Consensus       292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL-iTLPeaIH-lL~~l~vLD  368 (1255)
T KOG0444|consen  292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL-ITLPEAIH-LLPDLKVLD  368 (1255)
T ss_pred             HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce-eechhhhh-hcCCcceee
Confidence            9999999999986 347899999999999999999998 8999999999999999999999 67899887 699999999


Q ss_pred             ccCcccceec
Q 047797          638 LKSNNFHGNI  647 (927)
Q Consensus       638 L~~n~l~~~~  647 (927)
                      ++.|.-.-..
T Consensus       369 lreNpnLVMP  378 (1255)
T KOG0444|consen  369 LRENPNLVMP  378 (1255)
T ss_pred             ccCCcCccCC
Confidence            9999765333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.7e-32  Score=289.75  Aligned_cols=394  Identities=27%  Similarity=0.391  Sum_probs=256.6

Q ss_pred             CCCCCEEEccCCcCC-CcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCC
Q 047797          290 MVSLRLLSLASNELE-GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL  368 (927)
Q Consensus       290 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~  368 (927)
                      ++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.      +|++|.+++|++....-.+..++
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lq------kLEHLs~~HN~L~~vhGELs~Lp   78 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQ------KLEHLSMAHNQLISVHGELSDLP   78 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHh------hhhhhhhhhhhhHhhhhhhccch
Confidence            344556677777777 456777777777777777766664 5566677666      66666666666665555566666


Q ss_pred             CCCEEEccCCcCCC-cchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceee
Q 047797          369 SLKVLKLGENHLNG-TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLS  447 (927)
Q Consensus       369 ~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  447 (927)
                      .|+.+.+.+|++.. -+|..+.++..|+.|||++|++. +.|.. +...+++-.|+|++|+|.                 
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~-LE~AKn~iVLNLS~N~Ie-----------------  139 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN-LEYAKNSIVLNLSYNNIE-----------------  139 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchh-hhhhcCcEEEEcccCccc-----------------
Confidence            66666666666532 34555556666666666666665 34442 444444445555544443                 


Q ss_pred             cccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccC
Q 047797          448 LASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFD  527 (927)
Q Consensus       448 L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~  527 (927)
                                                      .+|..++..+..|-+||||+|++....|.. ..               
T Consensus       140 --------------------------------tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-RR---------------  171 (1255)
T KOG0444|consen  140 --------------------------------TIPNSLFINLTDLLFLDLSNNRLEMLPPQI-RR---------------  171 (1255)
T ss_pred             --------------------------------cCCchHHHhhHhHhhhccccchhhhcCHHH-HH---------------
Confidence                                            333333333334444444444443222211 11               


Q ss_pred             CCCCCCCCCCceEeCcCCCCCCC-CcccccCCCCCEEEccCcccc-ccCCCcccccCcccEEEcccccccccCCccccCC
Q 047797          528 GPIPPLPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFS-GKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNC  605 (927)
Q Consensus       528 ~~~~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  605 (927)
                            +..|++|+|++|.+... -..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.+.++
T Consensus       172 ------L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l  244 (1255)
T KOG0444|consen  172 ------LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL  244 (1255)
T ss_pred             ------HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence                  22344455555543331 122335677888888876543 457888888888888888888887 788888888


Q ss_pred             CCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc-cccchhhccccccccc
Q 047797          606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS-GKIPKCFSNFSMMIQE  684 (927)
Q Consensus       606 ~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~  684 (927)
                      ++|+.|+||+|+| ..+..... ...+|++|+++.|+++ .+|..++.++.|+.|.+.+|+++ .-+|..++.+..|   
T Consensus       245 ~~LrrLNLS~N~i-teL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L---  318 (1255)
T KOG0444|consen  245 RNLRRLNLSGNKI-TELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL---  318 (1255)
T ss_pred             hhhheeccCcCce-eeeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh---
Confidence            8888888888888 34544554 4678888888888888 77888888888888888888876 2466666655444   


Q ss_pred             cCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccccc
Q 047797          685 KSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNN  764 (927)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~  764 (927)
                                                                     +.+..++|.+ +..|+.+..+..|+.|.|++|+
T Consensus       319 -----------------------------------------------evf~aanN~L-ElVPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  319 -----------------------------------------------EVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             -----------------------------------------------HHHHhhcccc-ccCchhhhhhHHHHHhcccccc
Confidence                                                           7778888888 6788899999999999999999


Q ss_pred             ccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC-----cCcccCCC
Q 047797          765 LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN-----SLSGKIPL  819 (927)
Q Consensus       765 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N-----~l~~~~p~  819 (927)
                      +. ..|+++.-++.|+.||+..|.-.-..|.--..-++|+.-++..-     ++-|..|.
T Consensus       351 Li-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa  409 (1255)
T KOG0444|consen  351 LI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA  409 (1255)
T ss_pred             ee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence            87 56888888999999999998876444433222256666555532     34465553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=5.7e-26  Score=229.58  Aligned_cols=135  Identities=30%  Similarity=0.391  Sum_probs=97.2

Q ss_pred             cccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCC-CCCCCchhHHHhhccCCCc
Q 047797          265 LSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPR-NKLSGQLSELIQNLSSGCT  343 (927)
Q Consensus       265 ~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~~~~  343 (927)
                      +++....++|..|+|+.+.|.+|+.+++|+.|||++|.|+.+.|++|.++++|..|.+.+ |+|+......|+++.    
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~----  140 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS----  140 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH----
Confidence            344667788888888877777788888888888888888888888888877777666655 666655555555554    


Q ss_pred             CCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEE
Q 047797          344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLF  423 (927)
Q Consensus       344 ~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  423 (927)
                                               .|+.|.+.-|++.....+.|..+++|..|.+.+|.+. .++...|..+..++.+.
T Consensus       141 -------------------------slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlh  194 (498)
T KOG4237|consen  141 -------------------------SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLH  194 (498)
T ss_pred             -------------------------HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHh
Confidence                                     5666666666666666777777777777777777775 55665677777777777


Q ss_pred             ccCCcc
Q 047797          424 LADNSL  429 (927)
Q Consensus       424 L~~n~l  429 (927)
                      +..|.+
T Consensus       195 lA~np~  200 (498)
T KOG4237|consen  195 LAQNPF  200 (498)
T ss_pred             hhcCcc
Confidence            777664

>PLN03210 Resistant to P

Probab=99.89  E-value=5.9e-22  Score=248.40  Aligned_cols=295  Identities=24%  Similarity=0.252  Sum_probs=139.0

Q ss_pred             ccccCCCCCcEEeCCCCCC------CCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCC
Q 047797          309 KFFGNMCSLNQLYLPRNKL------SGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG  382 (927)
Q Consensus       309 ~~~~~l~~L~~L~L~~n~l------~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~  382 (927)
                      .+|.++++|+.|.+..+..      ...+|..+..++.     +|+.|.+.++.+...+..+ ...+|++|++++|.+. 
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~-----~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP-----KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCc-----ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-
Confidence            4455566666666544321      1223333333321     4555555555444322223 3345555555555544 


Q ss_pred             cchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhh
Q 047797          383 TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQ  462 (927)
Q Consensus       383 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  462 (927)
                      .++..+..+++|+.|+++++...+.+|.  +..+++                        |+.|++++|.....+|..+.
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~------------------------Le~L~L~~c~~L~~lp~si~  678 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATN------------------------LETLKLSDCSSLVELPSSIQ  678 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc--cccCCc------------------------ccEEEecCCCCccccchhhh
Confidence            3334444455555555554433333332  334444                        44444444444445566666


Q ss_pred             cCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeC
Q 047797          463 TQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNL  542 (927)
Q Consensus       463 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L  542 (927)
                      .+++|+.|++++|.....+|..+  .+++|+.|++++|                        ...+.+|..+.+|++|++
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc------------------------~~L~~~p~~~~nL~~L~L  732 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGC------------------------SRLKSFPDISTNISWLDL  732 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCC------------------------CCccccccccCCcCeeec
Confidence            66666666666654433444322  1234444444443                        333333444456666666


Q ss_pred             cCCCCCCCCcccccCCCCCEEEccCccccc-------cCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797          543 SKNKFSGLPDCWLNFNSLSILNLANNRFSG-------KIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK  615 (927)
Q Consensus       543 ~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  615 (927)
                      ++|.++.+|..+ .+++|++|++.++....       ..+..+...++|+.|++++|...+.+|..++++++|+.|++++
T Consensus       733 ~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~  811 (1153)
T PLN03210        733 DETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN  811 (1153)
T ss_pred             CCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence            666666666543 45666666665543211       1111112234555555555554445555555555555555555


Q ss_pred             CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797          616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS  668 (927)
Q Consensus       616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  668 (927)
                      |...+.+|..+  .+++|+.|++++|.....+|..   .++|+.|+|++|.++
T Consensus       812 C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~  859 (1153)
T PLN03210        812 CINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE  859 (1153)
T ss_pred             CCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc
Confidence            54434444433  3455555555554433333321   234445555555444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=2.9e-21  Score=242.24  Aligned_cols=341  Identities=18%  Similarity=0.148  Sum_probs=226.5

Q ss_pred             HHhhcCCCCCCEEEcCCCCCC------CCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCc
Q 047797          207 FQVVSQLHSLKTLVLRSCYLP------PINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQ  280 (927)
Q Consensus       207 ~~~l~~l~~L~~L~L~~n~l~------~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~  280 (927)
                      ...+.++++|+.|.+..+...      ...|  ..+..++++|+.|++.++.+.  .+|..+ ... +|++|++.+|++.
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp--~~~~~lp~~Lr~L~~~~~~l~--~lP~~f-~~~-~L~~L~L~~s~l~  624 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP--EGFDYLPPKLRLLRWDKYPLR--CMPSNF-RPE-NLVKLQMQGSKLE  624 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecC--cchhhcCcccEEEEecCCCCC--CCCCcC-Ccc-CCcEEECcCcccc
Confidence            345777888888888655322      1222  234444467888888888773  555554 333 8888888888876


Q ss_pred             CCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCccc
Q 047797          281 GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGP  360 (927)
Q Consensus       281 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~  360 (927)
                       .++..+..+++|+.|+|+++.....+|. +..+++|++|++++|.....+|..+..++      +|+.|++++|...+.
T Consensus       625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~------~L~~L~L~~c~~L~~  696 (1153)
T PLN03210        625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN------KLEDLDMSRCENLEI  696 (1153)
T ss_pred             -ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC------CCCEEeCCCCCCcCc
Confidence             4666777888888888887765445553 67788888888888776667777787777      888888888765556


Q ss_pred             CCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceec-------c
Q 047797          361 IPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLK-------L  433 (927)
Q Consensus       361 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~  433 (927)
                      +|...++++|+.|++++|.....+|..   ..+|++|++++|.+. .+|..  ..+++|++|++.++.....       .
T Consensus       697 Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~  770 (1153)
T PLN03210        697 LPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEKLWERVQPLT  770 (1153)
T ss_pred             cCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc--ccccccccccccccchhhccccccccc
Confidence            666336788888888887655555532   357788888888875 45542  2567777777766432111       1


Q ss_pred             cCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccC
Q 047797          434 SHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLK  513 (927)
Q Consensus       434 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  513 (927)
                      +..+..+++|+.|++++|.....+|.++.++++|+.|++++|                         ...+.+|... .+
T Consensus       771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C-------------------------~~L~~LP~~~-~L  824 (1153)
T PLN03210        771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC-------------------------INLETLPTGI-NL  824 (1153)
T ss_pred             hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC-------------------------CCcCeeCCCC-Cc
Confidence            111112234555555555544445555555555555555544                         3333344332 45


Q ss_pred             CCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc
Q 047797          514 SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR  593 (927)
Q Consensus       514 ~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  593 (927)
                      ++|+.+++++|.....+|..+.+++.|++++|.++.+|.++..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus       825 ~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        825 ESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            56666677766666666666778999999999999999888899999999998865544577777788888888888774

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=4.5e-24  Score=215.99  Aligned_cols=314  Identities=22%  Similarity=0.247  Sum_probs=240.1

Q ss_pred             EEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCCCcccccCcccEEEccc-cccc
Q 047797          518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN-NRLN  595 (927)
Q Consensus       518 ~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~  595 (927)
                      .++.++-.++......+...++++|..|+|+.||+ +|..+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+
T Consensus        50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            45666666666666678889999999999999875 688999999999999999999999999999988877766 9999


Q ss_pred             ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhh
Q 047797          596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF  675 (927)
Q Consensus       596 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  675 (927)
                      ......|.++.+|+.|.+.-|++. .++...+..+++|..|.+.+|.+..+--..+..+.+++.+.+..|.+-     +.
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i-----cd  203 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI-----CD  203 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc-----cc
Confidence            888889999999999999999994 455444458999999999999998555558999999999999999854     33


Q ss_pred             ccccccccccCCCCcccccccc--c---------cccccceeeeecceeEEeee-------cccccccccccceeEEEcc
Q 047797          676 SNFSMMIQEKSSNPIIGLANEI--L---------VVPGYIYYFRYLDNVLLTWK-------GSEHEYKSTLGFVKYLDLS  737 (927)
Q Consensus       676 ~~l~~l~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~L~~LdLs  737 (927)
                      .+++.+......+++.......  +         ..... ....+.+.......       .-...-++.+++|+.|+|+
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~-kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls  282 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR-KFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS  282 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhcccchh-hhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence            3444433222212111100000  0         00000 00000111100000       0112336789999999999


Q ss_pred             CCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccC
Q 047797          738 SNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKI  817 (927)
Q Consensus       738 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  817 (927)
                      +|+|+++-+.+|.++..+++|.|..|+|.......|.++..|+.|+|.+|+|+..-|..|..+.+|.+|++-.|+|.|.|
T Consensus       283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            99999999999999999999999999999887788999999999999999999999999999999999999999999998


Q ss_pred             CCCCcCCCCcccccCCCCCCCC
Q 047797          818 PLGTQLQSFNASVYAGNLELCG  839 (927)
Q Consensus       818 p~~~~~~~~~~~~~~~n~~lc~  839 (927)
                      -..+.-.|+...+..||+. |.
T Consensus       363 ~l~wl~~Wlr~~~~~~~~~-Cq  383 (498)
T KOG4237|consen  363 RLAWLGEWLRKKSVVGNPR-CQ  383 (498)
T ss_pred             chHHHHHHHhhCCCCCCCC-CC
Confidence            8776666776666666643 44

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=1.9e-21  Score=225.19  Aligned_cols=262  Identities=27%  Similarity=0.338  Sum_probs=182.6

Q ss_pred             cccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCC
Q 047797          466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN  545 (927)
Q Consensus       466 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n  545 (927)
                      +-..|+++++.++ .+|..+.   .+|+.|++++|+++. +|.   ..++|++|++++|+++. +|..+++|+.|++++|
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N  272 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSN  272 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCcccccceeeccCC
Confidence            3455666666665 3555443   356677777776664 332   23567777777777764 4556677888888888


Q ss_pred             CCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChh
Q 047797          546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTC  625 (927)
Q Consensus       546 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  625 (927)
                      .++.+|...   ++|+.|++++|+++. +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|++. .+|. 
T Consensus       273 ~L~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~-  339 (788)
T PRK15387        273 PLTHLPALP---SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT-  339 (788)
T ss_pred             chhhhhhch---hhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc-
Confidence            887776532   467788888888773 4432   4678888888888874 3432   245777888888873 4663 


Q ss_pred             hhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccce
Q 047797          626 VGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIY  705 (927)
Q Consensus       626 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  705 (927)
                         ...+|+.|+|++|++++ +|..   .++|+.|++++|++++ +|...                              
T Consensus       340 ---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~------------------------------  381 (788)
T PRK15387        340 ---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP------------------------------  381 (788)
T ss_pred             ---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc------------------------------
Confidence               13478888888888874 4432   3567778888888773 44311                              


Q ss_pred             eeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCC
Q 047797          706 YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS  785 (927)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  785 (927)
                                             ..|+.|++++|+|++ +|..   .++|+.|++++|++++ +|...   .+|+.|+++
T Consensus       382 -----------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls  430 (788)
T PRK15387        382 -----------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVY  430 (788)
T ss_pred             -----------------------cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhc
Confidence                                   234889999999986 4533   3678999999999985 56533   468889999


Q ss_pred             CCcCcccCCccccCCCCCCeEeCcCCcCcccCCC
Q 047797          786 RNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       786 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      +|+++ .+|..+..+++|+.|++++|+|+|.+|.
T Consensus       431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             cCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            99998 6899999999999999999999988775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.3e-20  Score=216.22  Aligned_cols=147  Identities=26%  Similarity=0.349  Sum_probs=107.0

Q ss_pred             CcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccc
Q 047797          516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN  595 (927)
Q Consensus       516 l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  595 (927)
                      ++.|++++|++.+ +|..+.+|+.|++++|+|+++|..   .++|+.|++++|.++. +|..   ..+|+.|++++|+++
T Consensus       324 L~~L~Ls~N~L~~-LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt  395 (788)
T PRK15387        324 LCKLWAYNNQLTS-LPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT  395 (788)
T ss_pred             ccccccccCcccc-ccccccccceEecCCCccCCCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence            4445555555543 444556788888888888887753   2467778888888874 5543   356888888888888


Q ss_pred             ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhh
Q 047797          596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF  675 (927)
Q Consensus       596 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  675 (927)
                      + +|..   .++|+.|++++|+++ .+|..    ..+|+.|++++|+++ .+|..++++++|+.|+|++|++++..|..+
T Consensus       396 ~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        396 S-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             C-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            4 4543   357888999999884 57753    346888999999988 678888889999999999999998888777


Q ss_pred             ccccc
Q 047797          676 SNFSM  680 (927)
Q Consensus       676 ~~l~~  680 (927)
                      ..+..
T Consensus       466 ~~l~s  470 (788)
T PRK15387        466 REITS  470 (788)
T ss_pred             HHHhc
Confidence            55433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=6.6e-19  Score=205.85  Aligned_cols=246  Identities=26%  Similarity=0.468  Sum_probs=139.1

Q ss_pred             cccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCC
Q 047797          466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN  545 (927)
Q Consensus       466 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n  545 (927)
                      +.+.|++++++++. +|..+   .+.++.|++++|+++. +|.                       ..+.+|++|++++|
T Consensus       179 ~~~~L~L~~~~Lts-LP~~I---p~~L~~L~Ls~N~Lts-LP~-----------------------~l~~nL~~L~Ls~N  230 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACI---PEQITTLILDNNELKS-LPE-----------------------NLQGNIKTLYANSN  230 (754)
T ss_pred             CceEEEeCCCCcCc-CCccc---ccCCcEEEecCCCCCc-CCh-----------------------hhccCCCEEECCCC
Confidence            44566666666653 34322   2355556666555552 222                       22345666666666


Q ss_pred             CCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChh
Q 047797          546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTC  625 (927)
Q Consensus       546 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  625 (927)
                      +++.+|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..
T Consensus       231 ~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~  301 (754)
T PRK15370        231 QLTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAH  301 (754)
T ss_pred             ccccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCccc
Confidence            6666655443  35666666666665 3444432  35666666666666 3444432  46666666666663 34543


Q ss_pred             hhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccce
Q 047797          626 VGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIY  705 (927)
Q Consensus       626 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  705 (927)
                      +.   ++|+.|++++|+++. +|..+  .++|+.|++++|.+++ +|..+.                             
T Consensus       302 lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~-----------------------------  345 (754)
T PRK15370        302 LP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP-----------------------------  345 (754)
T ss_pred             ch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc-----------------------------
Confidence            32   356666666666663 34332  2466677777776653 333221                             


Q ss_pred             eeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCC
Q 047797          706 YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS  785 (927)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  785 (927)
                                             ++|+.|++++|+++. +|..+.  ++|++|+|++|+|+. +|+.+.  .+|+.|+++
T Consensus       346 -----------------------~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs  396 (754)
T PRK15370        346 -----------------------PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQAS  396 (754)
T ss_pred             -----------------------CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhc
Confidence                                   234677777777753 454442  567777777777773 454443  357777777


Q ss_pred             CCcCcccCCccc----cCCCCCCeEeCcCCcCc
Q 047797          786 RNHFSGNIPSSL----SLLSGLSVLDLSYNSLS  814 (927)
Q Consensus       786 ~N~l~~~~p~~l----~~l~~L~~L~ls~N~l~  814 (927)
                      +|+++ .+|..+    ..++.+..+++.+|+++
T Consensus       397 ~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        397 RNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            77776 445443    33466777777777776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=4.4e-18  Score=198.96  Aligned_cols=246  Identities=27%  Similarity=0.361  Sum_probs=117.7

Q ss_pred             CccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEcc
Q 047797          346 SLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLA  425 (927)
Q Consensus       346 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  425 (927)
                      +...|+++++.++..+..+.  ++|+.|++++|+++. +|..+.  ++|++|++++|+++ .+|...   .++|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhh---hccccEEECc
Confidence            56777777777764332232  357777777777763 343332  36667777766665 344321   1244455554


Q ss_pred             CCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCC
Q 047797          426 DNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGK  505 (927)
Q Consensus       426 ~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  505 (927)
                      +|.+.                         .+|..+.  ++|+.|++++|++. .+|..+.   ++|+.|++++|++   
T Consensus       250 ~N~L~-------------------------~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~L---  295 (754)
T PRK15370        250 INRIT-------------------------ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSI---  295 (754)
T ss_pred             CCccC-------------------------cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcc---
Confidence            44443                         2233221  24555555555554 2333221   2334444443333   


Q ss_pred             CCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCccc
Q 047797          506 LPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQ  585 (927)
Q Consensus       506 ~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  585 (927)
                                           ++..+..+.+|+.|++++|+++.+|..+.  ++|+.|++++|.+++ +|..+.  ++|+
T Consensus       296 ---------------------t~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~  349 (754)
T PRK15370        296 ---------------------RTLPAHLPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS-LPASLP--PELQ  349 (754)
T ss_pred             ---------------------ccCcccchhhHHHHHhcCCccccCCcccc--ccceeccccCCcccc-CChhhc--Cccc
Confidence                                 32111123345555555555555554332  355555555555553 343332  4555


Q ss_pred             EEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccc----cCCCCCCEEE
Q 047797          586 TLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQL----CHLAFIQVLD  661 (927)
Q Consensus       586 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~  661 (927)
                      .|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.   .+|+.|++++|++. .+|..+    ..++.+..|+
T Consensus       350 ~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~  421 (754)
T PRK15370        350 VLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII  421 (754)
T ss_pred             EEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence            5555555554 3343332  45555555555553 3444332   24555555555554 223222    2234445555


Q ss_pred             ccccccc
Q 047797          662 LSLNNIS  668 (927)
Q Consensus       662 Ls~N~l~  668 (927)
                      +.+|+++
T Consensus       422 L~~Npls  428 (754)
T PRK15370        422 VEYNPFS  428 (754)
T ss_pred             eeCCCcc
Confidence            5555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=6.7e-19  Score=192.37  Aligned_cols=215  Identities=25%  Similarity=0.267  Sum_probs=130.9

Q ss_pred             cccccCCCCCEEEccCccccccCCCcccccCc---ccEEEcccccccc----cCCccccCC-CCCCEEecCCCcCCCCCC
Q 047797          552 DCWLNFNSLSILNLANNRFSGKIPDSMGFLHN---IQTLSLRNNRLNG----ELPSSLKNC-SKLRVLDLRKNALFGEVP  623 (927)
Q Consensus       552 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~L~~N~l~~----~~~~~~~~l-~~L~~L~Ls~N~l~~~~p  623 (927)
                      ..+..+++|++|++++|.+.+..+..+..+.+   |++|++++|++++    .+...+..+ ++|+.|++++|.+++..+
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            44555667777777777776544444444444   7777777777763    222344555 777888888877754322


Q ss_pred             ----hhhhhcCccCcEEEccCccccee----cCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccc
Q 047797          624 ----TCVGGSLQNLIILRLKSNNFHGN----IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLAN  695 (927)
Q Consensus       624 ----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  695 (927)
                          ..+. .+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+...                 
T Consensus       155 ~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-----------------  216 (319)
T cd00116         155 EALAKALR-ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-----------------  216 (319)
T ss_pred             HHHHHHHH-hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-----------------
Confidence                2222 456777788877777632    23344556678888888887764332222110                 


Q ss_pred             ccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCcccccc-----ccCCCEEecccccccc---
Q 047797          696 EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITD-----LVGLTALNLSRNNLTG---  767 (927)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~---  767 (927)
                                                   ...+++|+.|++++|.+++.....+..     .+.|++|++++|.++.   
T Consensus       217 -----------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         217 -----------------------------LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             -----------------------------hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence                                         112345678888888777533333322     3678888888888762   


Q ss_pred             -cCCccccCCCCCCeEeCCCCcCccc----CCccccCC-CCCCeEeCcCCcC
Q 047797          768 -LIPPKIGQLKSLDFLDLSRNHFSGN----IPSSLSLL-SGLSVLDLSYNSL  813 (927)
Q Consensus       768 -~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l  813 (927)
                       .+...+..+++|+++|+++|.++..    ....+... +.|+++++.+|++
T Consensus       268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         268 KDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence             2234455667888888888888744    33334444 5788888888764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.67  E-value=4.8e-17  Score=177.74  Aligned_cols=87  Identities=22%  Similarity=0.232  Sum_probs=41.7

Q ss_pred             cCccEEEcCCCCCCCC---CcchhHhhcccCccEEEccCCcCcC------CcchhhhcCCCCCEEEccCCcCCCcCcccc
Q 047797          241 TSIETLDLSDNHLPSS---SVYPWLFNLSRNILHLDLGFNHLQG------SIPEAFQHMVSLRLLSLASNELEGGIPKFF  311 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~---~~~~~l~~~~~~L~~L~Ls~n~i~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~  311 (927)
                      +.|+.|+++++.+++.   .+++.+...+ ++++++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            5566666666665331   1222222222 46666666655541      122344455555555555555544333333


Q ss_pred             cCCCC---CcEEeCCCCCCC
Q 047797          312 GNMCS---LNQLYLPRNKLS  328 (927)
Q Consensus       312 ~~l~~---L~~L~L~~n~l~  328 (927)
                      ..+.+   |++|++++|.++
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             HHHhccCcccEEEeeCCccc
Confidence            33333   555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=6.4e-18  Score=151.88  Aligned_cols=185  Identities=29%  Similarity=0.528  Sum_probs=110.9

Q ss_pred             cccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccC
Q 047797          554 WLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL  633 (927)
Q Consensus       554 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L  633 (927)
                      +.++..++.|.+|+|+++ .+|..+..+.+|+.|++++|+|+ .+|.+++.+++|+.|+++-|++               
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl---------------   91 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL---------------   91 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh---------------
Confidence            344555666666666666 34445555666666666666665 4455555555555555555554               


Q ss_pred             cEEEccCcccceecCccccCCCCCCEEEcccccccc-ccchhhccccccccccCCCCccccccccccccccceeeeecce
Q 047797          634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG-KIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDN  712 (927)
Q Consensus       634 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (927)
                                . ..|..|+.++.|+.|||++|++.. .+|..|..++.                                
T Consensus        92 ----------~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~t--------------------------------  128 (264)
T KOG0617|consen   92 ----------N-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTT--------------------------------  128 (264)
T ss_pred             ----------h-cCccccCCCchhhhhhccccccccccCCcchhHHHH--------------------------------
Confidence                      3 444555555555555555555542 23333333222                                


Q ss_pred             eEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCccc
Q 047797          713 VLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN  792 (927)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  792 (927)
                                        |+.|+|+.|.+ +.+|..++++++|+.|.+..|.+- ..|.+++.++.|++|.+.+|+++ .
T Consensus       129 ------------------lralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v  187 (264)
T KOG0617|consen  129 ------------------LRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V  187 (264)
T ss_pred             ------------------HHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence                              25666677766 456667777777777777777776 45777777777777777777777 5


Q ss_pred             CCccccCCC---CCCeEeCcCCcCcccCCC
Q 047797          793 IPSSLSLLS---GLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       793 ~p~~l~~l~---~L~~L~ls~N~l~~~~p~  819 (927)
                      +|..++++.   +=+.+.+.+|+|.-.|..
T Consensus       188 lppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  188 LPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             cChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            666665543   234566778888765543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-17  Score=148.45  Aligned_cols=131  Identities=34%  Similarity=0.460  Sum_probs=115.8

Q ss_pred             CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      +..++.|-+++|+++.+|..+..+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. +.|..|+.++.|+.||+
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            45788899999999999999999999999999999998 67889999999999999999998 89999999999999999


Q ss_pred             CCCcCCC-CCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797          614 RKNALFG-EVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS  668 (927)
Q Consensus       614 s~N~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  668 (927)
                      .+|.+.. .+|..++ .+..|+.|.|++|.+. .+|..++++++|+.|.+.+|.+-
T Consensus       110 tynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             cccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence            9999854 5677777 6888888888888887 67777888888888877777664

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=3.5e-14  Score=166.31  Aligned_cols=118  Identities=41%  Similarity=0.693  Sum_probs=104.9

Q ss_pred             ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797          730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS  809 (927)
Q Consensus       730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  809 (927)
                      .++.|+|++|.++|.+|..+.++++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++.+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCC--cCCCCcccccCCCCCCCCCCCCCCCC
Q 047797          810 YNSLSGKIPLGT--QLQSFNASVYAGNLELCGLPLPNKCA  847 (927)
Q Consensus       810 ~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~~~~~C~  847 (927)
                      +|+++|.+|..-  .........+.+|+.+||.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999742  12223345688999999977655673

>PLN03150 hypothetical protein; Provisional

Probab=99.46  E-value=3.2e-13  Score=158.26  Aligned_cols=127  Identities=31%  Similarity=0.520  Sum_probs=109.3

Q ss_pred             CCCHHHHHHHHHhhhcCcCCCCCcCCCCCCCCCCCCc----cccceeecC--CC--CCEEEEECCCCchhhhhccccccc
Q 047797           34 RCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCC----KWRGVRCSN--TT--GHVKVLNLQTSDHEFARRKFLKGK  105 (927)
Q Consensus        34 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~l~g~  105 (927)
                      .+.++|.+||+++|+++.++..  .+|.    ++.||    .|.||.|..  ..  .+|+.|+|++        +.+.|.
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------n~L~g~  433 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------QGLRGF  433 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC--------CCcccc
Confidence            4567899999999999976542  4796    44553    799999952  22  2599999999        889999


Q ss_pred             cCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCc
Q 047797          106 ISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL  175 (927)
Q Consensus       106 ~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~  175 (927)
                      +|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|.+++.+|..++++++|++|+|++|.+
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence            999999999999999999999986 999999999999999999999999999999999999988877764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=4.4e-12  Score=131.59  Aligned_cols=220  Identities=22%  Similarity=0.193  Sum_probs=133.1

Q ss_pred             CCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhcccc
Q 047797          160 RDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNL  239 (927)
Q Consensus       160 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~  239 (927)
                      +++.+|+...|.++..-..+.-.....|++++.||||.|-+.....+......+|+|+.|+++.|++.....+  .....
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s--~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS--NTTLL  195 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--cchhh
Confidence            4566666666655544332222346678888888889888888777777788899999999999987766552  22333


Q ss_pred             ccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcC-cccccCCCCCc
Q 047797          240 STSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNMCSLN  318 (927)
Q Consensus       240 ~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~  318 (927)
                      .+.|+.|.|+.|.++- ....++....|+|+.|+|.+|...........-+..|+.|||++|++.... -...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            4788888888888865 333344444448888888887543344444555677777888877765321 13345666777


Q ss_pred             EEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCc-chhhhhccCCCCEE
Q 047797          319 QLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT-INKSLSHLFKLETL  397 (927)
Q Consensus       319 ~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L  397 (927)
                      .|+++.+.+....-...+                       .......+++|++|+++.|++..- .-..+..+++|+.|
T Consensus       275 ~Lnls~tgi~si~~~d~~-----------------------s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l  331 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVE-----------------------SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHL  331 (505)
T ss_pred             hhhccccCcchhcCCCcc-----------------------chhhhcccccceeeecccCccccccccchhhccchhhhh
Confidence            777776665432110000                       000023455667777777666421 11234445666666


Q ss_pred             ecCCcccc
Q 047797          398 SLDGNSFT  405 (927)
Q Consensus       398 ~L~~n~l~  405 (927)
                      .+..|.+.
T Consensus       332 ~~~~n~ln  339 (505)
T KOG3207|consen  332 RITLNYLN  339 (505)
T ss_pred             hccccccc
Confidence            66666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.18  E-value=7.3e-13  Score=141.39  Aligned_cols=192  Identities=29%  Similarity=0.469  Sum_probs=146.3

Q ss_pred             CceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCC
Q 047797          537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN  616 (927)
Q Consensus       537 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  616 (927)
                      -...|++.|++..+|..+..+..|+.+.+.+|.+. .+|.+++++..|++++|+.|+++ ..|..+..|+ |+.|-+++|
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN  153 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN  153 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence            45678888888888888888888888888888887 67888888888888888888888 6677777766 888888888


Q ss_pred             cCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccc
Q 047797          617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANE  696 (927)
Q Consensus       617 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  696 (927)
                      ++ +.+|..++ ..+.|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..++                 
T Consensus       154 kl-~~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-----------------  212 (722)
T KOG0532|consen  154 KL-TSLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-----------------  212 (722)
T ss_pred             cc-ccCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-----------------
Confidence            88 67888887 6888888888888887 56777888888888888888886 4444444322                 


Q ss_pred             cccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc--
Q 047797          697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG--  774 (927)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--  774 (927)
                                                        |..||+|+|+++. +|-.|.+|+.|++|-|.+|.+. ..|..+.  
T Consensus       213 ----------------------------------Li~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~k  256 (722)
T KOG0532|consen  213 ----------------------------------LIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEK  256 (722)
T ss_pred             ----------------------------------eeeeecccCceee-cchhhhhhhhheeeeeccCCCC-CChHHHHhc
Confidence                                              3678888888854 7788888888888888888887 3444443  


Q ss_pred             -CCCCCCeEeCCCCc
Q 047797          775 -QLKSLDFLDLSRNH  788 (927)
Q Consensus       775 -~l~~L~~L~Ls~N~  788 (927)
                       ...--++|+..-++
T Consensus       257 GkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  257 GKVHIFKYLSTQACQ  271 (722)
T ss_pred             cceeeeeeecchhcc
Confidence             23344566666663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=5.8e-11  Score=133.53  Aligned_cols=83  Identities=45%  Similarity=0.624  Sum_probs=42.0

Q ss_pred             eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN  811 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  811 (927)
                      ++|++++|.+. .++..+.++..+..|.+++|++... +..++.+++++.|++++|.++.. +. ++.+.+++.|++++|
T Consensus       212 ~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             hhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccc-cc-ccccCccCEEeccCc
Confidence            44555555321 2333445555555555555555432 34455555555555555555532 22 555555555555555


Q ss_pred             cCcccCC
Q 047797          812 SLSGKIP  818 (927)
Q Consensus       812 ~l~~~~p  818 (927)
                      .++...|
T Consensus       288 ~~~~~~~  294 (394)
T COG4886         288 SLSNALP  294 (394)
T ss_pred             cccccch
Confidence            5554444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=3.8e-11  Score=134.95  Aligned_cols=199  Identities=35%  Similarity=0.555  Sum_probs=118.9

Q ss_pred             EeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccC-cccEEEcccccccccCCccccCCCCCCEEecCCCcC
Q 047797          540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLH-NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL  618 (927)
Q Consensus       540 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  618 (927)
                      +++..+.+..-+..+..++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|++
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh
Confidence            44555554332233334455666666666666 3333444442 6666666666666 3444556666667777777666


Q ss_pred             CCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccc
Q 047797          619 FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEIL  698 (927)
Q Consensus       619 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  698 (927)
                       ..+|.... ..++|+.|++++|++. .+|........|+++++++|++. ..+..+.++.                   
T Consensus       176 -~~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~-------------------  232 (394)
T COG4886         176 -SDLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK-------------------  232 (394)
T ss_pred             -hhhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcc-------------------
Confidence             34444432 3566777777777766 44444444555777777777532 2233333322                   


Q ss_pred             cccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCC
Q 047797          699 VVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKS  778 (927)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  778 (927)
                                                     .+..+.+++|++.. ++..++.+++++.|++++|.++...+  ++.+.+
T Consensus       233 -------------------------------~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~  278 (394)
T COG4886         233 -------------------------------NLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTN  278 (394)
T ss_pred             -------------------------------cccccccCCceeee-ccchhccccccceecccccccccccc--ccccCc
Confidence                                           23556677777644 25667777888888888888885533  778888


Q ss_pred             CCeEeCCCCcCcccCCccc
Q 047797          779 LDFLDLSRNHFSGNIPSSL  797 (927)
Q Consensus       779 L~~L~Ls~N~l~~~~p~~l  797 (927)
                      ++.||+++|.++...|...
T Consensus       279 l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         279 LRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cCEEeccCccccccchhhh
Confidence            8888888888886666544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=2.3e-12  Score=137.69  Aligned_cols=211  Identities=24%  Similarity=0.436  Sum_probs=165.1

Q ss_pred             EeCcCCCCCCCCccc--ccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797          540 LNLSKNKFSGLPDCW--LNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA  617 (927)
Q Consensus       540 L~L~~n~l~~lp~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  617 (927)
                      |.|++-+++..|..-  ..+.--...|++.|++. ++|..++.+..|+.+.+..|.+. .+|..+.++..|++|||+.|+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence            455666666655332  23445567899999998 67888888899999999999998 788899999999999999999


Q ss_pred             CCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccc
Q 047797          618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEI  697 (927)
Q Consensus       618 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~  697 (927)
                      + ..+|..++ .+ -|+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.++                
T Consensus       133 l-S~lp~~lC-~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------  191 (722)
T KOG0532|consen  133 L-SHLPDGLC-DL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------  191 (722)
T ss_pred             h-hcCChhhh-cC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH----------------
Confidence            9 67887776 34 4899999999998 77888888899999999999987 566666665555                


Q ss_pred             ccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCC
Q 047797          698 LVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK  777 (927)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  777 (927)
                                                        +.|.+..|++.. .|+++.. -.|..||+|.|+++ .||-.|.+|+
T Consensus       192 ----------------------------------r~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~  234 (722)
T KOG0532|consen  192 ----------------------------------RDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMR  234 (722)
T ss_pred             ----------------------------------HHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee-ecchhhhhhh
Confidence                                              778888888866 4555664 45888999999998 6788999999


Q ss_pred             CCCeEeCCCCcCcccCCccc---cCCCCCCeEeCcCC
Q 047797          778 SLDFLDLSRNHFSGNIPSSL---SLLSGLSVLDLSYN  811 (927)
Q Consensus       778 ~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~ls~N  811 (927)
                      .|++|-|.+|.+. ..|..+   +...-.++|+..-+
T Consensus       235 ~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  235 HLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            9999999999998 455553   33344677777776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=3.9e-11  Score=118.15  Aligned_cols=133  Identities=30%  Similarity=0.308  Sum_probs=101.3

Q ss_pred             CccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeee
Q 047797          630 LQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRY  709 (927)
Q Consensus       630 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  709 (927)
                      .+.|+++||++|.|+ .+.++..-+|.++.|++|+|.+...     .++                               
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-----~nL-------------------------------  325 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-----QNL-------------------------------  325 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-----hhh-------------------------------
Confidence            456888888888887 5566777788888888888887621     111                               


Q ss_pred             cceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcC
Q 047797          710 LDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF  789 (927)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  789 (927)
                                      ..+++|+.||||+|.++...- .-..+-+.+.|+|++|.|...  +.++++-+|..||+++|+|
T Consensus       326 ----------------a~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  326 ----------------AELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             ----------------hhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccch
Confidence                            123456888999988865432 334577889999999999877  7788899999999999999


Q ss_pred             cccC-CccccCCCCCCeEeCcCCcCcccCC
Q 047797          790 SGNI-PSSLSLLSGLSVLDLSYNSLSGKIP  818 (927)
Q Consensus       790 ~~~~-p~~l~~l~~L~~L~ls~N~l~~~~p  818 (927)
                      .... -..+++|+-|+.+.+.+||+.+...
T Consensus       387 e~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  387 EELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhHHHhcccccccHHHHHhhcCCCccccch
Confidence            7533 2458899999999999999987644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.6e-11  Score=124.97  Aligned_cols=186  Identities=22%  Similarity=0.181  Sum_probs=104.4

Q ss_pred             cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchh-hhcCCCCCEEEccCCcCCCcC-cccccCCCCCc
Q 047797          241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA-FQHMVSLRLLSLASNELEGGI-PKFFGNMCSLN  318 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~  318 (927)
                      ++++.||||.|-+........+..-.|+|+.|+++.|++....... -..+++|+.|.++.|.++... ......+|+|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            5556666666544331222223322336666666666554221111 124566677777777666322 22334567777


Q ss_pred             EEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccC--CCCCCCCCCCEEEccCCcCCCcc-hhh-----hhc
Q 047797          319 QLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPI--PDLGRFLSLKVLKLGENHLNGTI-NKS-----LSH  390 (927)
Q Consensus       319 ~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~--~~l~~l~~L~~L~Ls~n~l~~~~-~~~-----l~~  390 (927)
                      .|+|..|............+.      .|+.|+|++|.+....  +..+.++.|+.|+++.+.+...- |+.     ...
T Consensus       226 ~L~L~~N~~~~~~~~~~~i~~------~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  226 VLYLEANEIILIKATSTKILQ------TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             Hhhhhcccccceecchhhhhh------HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            777777742222222222333      7777788777776544  33778888888888888876532 221     345


Q ss_pred             cCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceec
Q 047797          391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLK  432 (927)
Q Consensus       391 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  432 (927)
                      +++|++|++..|++...-.-..+..+++|+.|.+..|.+...
T Consensus       300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             cccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            678888888888875332222345566777777777766543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.03  E-value=7.1e-11  Score=119.63  Aligned_cols=39  Identities=21%  Similarity=0.143  Sum_probs=18.1

Q ss_pred             CccccEEEccCCccCCCccchHHh---hccccceeecccccc
Q 047797          464 QNQLISLDISNIGISDTIPDWFWD---LSIELFFLNLSNNHI  502 (927)
Q Consensus       464 ~~~L~~L~Ls~n~l~~~~~~~~~~---~~~~L~~L~Ls~n~l  502 (927)
                      .++|+.|.+.+|.|+......+..   -.+.|+.|++++|.+
T Consensus       269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            345555555555554322111111   124566666666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.01  E-value=1.3e-10  Score=117.86  Aligned_cols=227  Identities=22%  Similarity=0.200  Sum_probs=113.4

Q ss_pred             CCEEEEECCCCchhhhhcccccc----ccCccccCCCCCCeeeCCCCCCCCC--CCCc-------cccCCCCCCEEECCC
Q 047797           82 GHVKVLNLQTSDHEFARRKFLKG----KISPALLKLRGLRHLDLSKNDFGGS--PVPE-------FIGSLSKLRYLNLSC  148 (927)
Q Consensus        82 ~~v~~L~L~~~~~~~~~~~~l~g----~~~~~l~~l~~L~~L~Ls~n~~~~~--~lp~-------~l~~l~~L~~L~Ls~  148 (927)
                      ..++.|+|+|        +.+.-    .+.+.+.+.+.|+.-++|+-.-...  .+|.       .+..+++|++||||.
T Consensus        30 ~s~~~l~lsg--------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   30 DSLTKLDLSG--------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             CceEEEeccC--------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            4578888888        44432    2445667777888888775422110  1332       345567888888888


Q ss_pred             CCCCCCCCccC----CCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCC
Q 047797          149 GTPSSKIPHPF----RDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSC  224 (927)
Q Consensus       149 n~~~~~~p~~l----~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n  224 (927)
                      |.+...-+..|    +.++.|++|.|.+|.+-....- .+++  -|.+|           ......+.-++|+++...+|
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~-~l~~--al~~l-----------~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGG-RLGR--ALFEL-----------AVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHH-HHHH--HHHHH-----------HHHhccCCCcceEEEEeecc
Confidence            87765544333    4556666666655544221110 0000  00000           00112233455666666666


Q ss_pred             CCCCCCCc-hhhccccccCccEEEcCCCCCCCCCc--chhHhhcccCccEEEccCCcCcCC----cchhhhcCCCCCEEE
Q 047797          225 YLPPINPS-FIWLFNLSTSIETLDLSDNHLPSSSV--YPWLFNLSRNILHLDLGFNHLQGS----IPEAFQHMVSLRLLS  297 (927)
Q Consensus       225 ~l~~~~~~-~~~l~~~~~~L~~L~Ls~n~l~~~~~--~~~l~~~~~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~  297 (927)
                      ++...... +...++..+.|+.+.++.|.|....+  ...-+..+++|+.|||.+|.++..    +.+.+..+++|++|+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            55544331 11122223556666666665522111  111122223666666666665432    334455666677777


Q ss_pred             ccCCcCCCcCcccc-----cCCCCCcEEeCCCCCCCCc
Q 047797          298 LASNELEGGIPKFF-----GNMCSLNQLYLPRNKLSGQ  330 (927)
Q Consensus       298 Ls~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~  330 (927)
                      +++|.+......+|     ...++|++|.+.+|.++..
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d  285 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD  285 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence            77776654333222     2356666666666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=2.2e-10  Score=113.03  Aligned_cols=226  Identities=23%  Similarity=0.288  Sum_probs=136.3

Q ss_pred             CEEEEECCCCchhhhhccccccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCC---CCCccC
Q 047797           83 HVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSS---KIPHPF  159 (927)
Q Consensus        83 ~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~---~~p~~l  159 (927)
                      ++++|.+++...-+.+++-+...+|-.+.-+++|..+.+|.+.-..  +......-+.|+++...+.....   .+|...
T Consensus       183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~  260 (490)
T KOG1259|consen  183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDVPSLLPETI  260 (490)
T ss_pred             heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeecccccccccccchhh
Confidence            5777777774432222233333455556777888888888775433  22222334567777776554332   122111


Q ss_pred             CCCCCCcEEecCCCCc--cCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhcc
Q 047797          160 RDLSGFEYFNVENSNL--FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLF  237 (927)
Q Consensus       160 ~~l~~L~~L~Ls~~~~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~  237 (927)
                             ..|......  ...+....+..-+.|+++|||+|.++..   -.++.-.|.++.|+++.|.+.....    +.
T Consensus       261 -------~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i---DESvKL~Pkir~L~lS~N~i~~v~n----La  326 (490)
T KOG1259|consen  261 -------LADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI---DESVKLAPKLRRLILSQNRIRTVQN----LA  326 (490)
T ss_pred             -------hcCccCCCCCccCCceEEecchHhhhhhccccccchhhh---hhhhhhccceeEEeccccceeeehh----hh
Confidence                   111111111  1111112233346788888888888763   3566677888888888888776643    44


Q ss_pred             ccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcC-cccccCCCC
Q 047797          238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNMCS  316 (927)
Q Consensus       238 ~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~  316 (927)
                      .+ ++|+.||||+|.++  .+..|-.++- +++.|.|++|.+...  ..++++-+|..||+++|+|.... ...++++|.
T Consensus       327 ~L-~~L~~LDLS~N~Ls--~~~Gwh~KLG-NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC  400 (490)
T KOG1259|consen  327 EL-PQLQLLDLSGNLLA--ECVGWHLKLG-NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC  400 (490)
T ss_pred             hc-ccceEeecccchhH--hhhhhHhhhc-CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccH
Confidence            55 88888888888774  3444444555 788888888877532  34677777888888888776332 255777788


Q ss_pred             CcEEeCCCCCCCCc
Q 047797          317 LNQLYLPRNKLSGQ  330 (927)
Q Consensus       317 L~~L~L~~n~l~~~  330 (927)
                      |+++.|.+|.+.+.
T Consensus       401 LE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  401 LETLRLTGNPLAGS  414 (490)
T ss_pred             HHHHhhcCCCcccc
Confidence            88888877777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=4e-10  Score=107.72  Aligned_cols=122  Identities=29%  Similarity=0.354  Sum_probs=34.7

Q ss_pred             CCceEeCcCCCCCCCCcccc-cCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccc-cCCCCCCEEec
Q 047797          536 NSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSL-KNCSKLRVLDL  613 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  613 (927)
                      .+++|+|++|+|+.+. .+. .+.+|+.|++++|.++..  +.+..+++|++|++++|+|+.. ++.+ ..+++|++|++
T Consensus        20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEEC
Confidence            4566666666666653 333 356666666666666633  2355566666666666666633 2233 34666666666


Q ss_pred             CCCcCCCCCC-hhhhhcCccCcEEEccCcccceec---CccccCCCCCCEEEc
Q 047797          614 RKNALFGEVP-TCVGGSLQNLIILRLKSNNFHGNI---PFQLCHLAFIQVLDL  662 (927)
Q Consensus       614 s~N~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L  662 (927)
                      ++|+|...-. ..+. .+++|++|++.+|+++...   ...+..+|+|+.||-
T Consensus        96 ~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   96 SNNKISDLNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TTS---SCCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCcCCChHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            6666632211 1222 4566666666666665321   112445566665553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.90  E-value=8.8e-10  Score=105.41  Aligned_cols=86  Identities=30%  Similarity=0.376  Sum_probs=23.3

Q ss_pred             CCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccC-CCCCCCcEEecCCCCccCCCCcccccCCCCCc
Q 047797          113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPF-RDLSGFEYFNVENSNLFSVGSLERLSHLSSLR  191 (927)
Q Consensus       113 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~  191 (927)
                      +.+|++|||++|.++..   ..+..+++|++|++++|.++.. +..+ ..+++|++|++++|.+.....+..++.+++|+
T Consensus        41 l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             -TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            34444444444444432   1234444444444444444422 1122 23444444444444444444444444444444


Q ss_pred             EEECCCccCCC
Q 047797          192 HLDLSCINLTK  202 (927)
Q Consensus       192 ~L~Ls~n~l~~  202 (927)
                      +|++.+|+++.
T Consensus       117 ~L~L~~NPv~~  127 (175)
T PF14580_consen  117 VLSLEGNPVCE  127 (175)
T ss_dssp             EEE-TT-GGGG
T ss_pred             eeeccCCcccc
Confidence            44444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=2.3e-09  Score=84.15  Aligned_cols=60  Identities=43%  Similarity=0.656  Sum_probs=35.6

Q ss_pred             ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcC
Q 047797          730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF  789 (927)
Q Consensus       730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  789 (927)
                      +|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            345666666666555555566666666666666666655555566666666666666553

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.80  E-value=2.8e-09  Score=127.60  Aligned_cols=110  Identities=32%  Similarity=0.372  Sum_probs=74.9

Q ss_pred             cccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCC
Q 047797          109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLS  188 (927)
Q Consensus       109 ~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~  188 (927)
                      .|..++.|++|||++|.-.+. +|..++.|-+||||+++++.+. .+|..+++|..|++||+..+...... ......++
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~  642 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQ  642 (889)
T ss_pred             HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcc
Confidence            366788888888888654443 8888888888888888888766 78888888888888888766543332 23344577


Q ss_pred             CCcEEECCCccCCCCCchHHhhcCCCCCCEEEc
Q 047797          189 SLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVL  221 (927)
Q Consensus       189 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L  221 (927)
                      +||+|.+..............+.++.+|+.+..
T Consensus       643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             cccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            888887776654333333444455555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=2.9e-09  Score=83.56  Aligned_cols=61  Identities=41%  Similarity=0.566  Sum_probs=57.8

Q ss_pred             cCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcC
Q 047797          753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL  813 (927)
Q Consensus       753 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  813 (927)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988888999999999999999999999899999999999999999985

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.6e-10  Score=114.07  Aligned_cols=181  Identities=27%  Similarity=0.249  Sum_probs=114.6

Q ss_pred             CCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCccc-ccCCCCCcEE
Q 047797          115 GLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLER-LSHLSSLRHL  193 (927)
Q Consensus       115 ~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~-l~~l~~L~~L  193 (927)
                      .|++||||...++..++-..+..|.+|+.|.|.++++.+.+-..+++-.+|+.|+++.++.++...+.. +..|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            588999998888765555667888999999999999988888888888999999998888766554432 4566666666


Q ss_pred             ECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCC--CCCCCcchhHhhcccCccE
Q 047797          194 DLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNH--LPSSSVYPWLFNLSRNILH  271 (927)
Q Consensus       194 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~~l~~~~~~L~~  271 (927)
                      +++++.+....  ..                         ..+....++|+.|++++..  +.. .-.+.+..-+++|.+
T Consensus       266 NlsWc~l~~~~--Vt-------------------------v~V~hise~l~~LNlsG~rrnl~~-sh~~tL~~rcp~l~~  317 (419)
T KOG2120|consen  266 NLSWCFLFTEK--VT-------------------------VAVAHISETLTQLNLSGYRRNLQK-SHLSTLVRRCPNLVH  317 (419)
T ss_pred             CchHhhccchh--hh-------------------------HHHhhhchhhhhhhhhhhHhhhhh-hHHHHHHHhCCceee
Confidence            66666554421  11                         1112222455555555542  111 122333444446777


Q ss_pred             EEccCCc-CcCCcchhhhcCCCCCEEEccCCcCCCcCccc---ccCCCCCcEEeCCCC
Q 047797          272 LDLGFNH-LQGSIPEAFQHMVSLRLLSLASNELEGGIPKF---FGNMCSLNQLYLPRN  325 (927)
Q Consensus       272 L~Ls~n~-i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L~~n  325 (927)
                      |||++|. ++......|.+++.|++|.++.|..  ++|..   +...|.|.+|++.++
T Consensus       318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            7776654 3333344566677777777777643  34443   356677888877765

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.75  E-value=9.3e-09  Score=73.51  Aligned_cols=41  Identities=51%  Similarity=0.995  Sum_probs=30.7

Q ss_pred             CHHHHHHHHHhhhcCc-CCCCCcCCCCCCCC-CCCCccccceeec
Q 047797           36 IDEEREALLTFKQSLV-DEYGVLSSWGSEDG-KRDCCKWRGVRCS   78 (927)
Q Consensus        36 ~~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~-~~~~c~w~gv~c~   78 (927)
                      .++|++||++||+++. +|.+.+.+|+.  . ..+||+|.||+|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence            3689999999999998 57789999984  3 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=1.6e-09  Score=121.94  Aligned_cols=223  Identities=25%  Similarity=0.262  Sum_probs=130.5

Q ss_pred             CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      ..+++.|++.+|+|..+...+..+++|++|++++|.|+...  .+..++.|+.|++++|.|...  ..+..++.|+.+++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDL  169 (414)
T ss_pred             ccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccC
Confidence            34556666666666665444555666666666666666442  244555566666666666532  23444566666666


Q ss_pred             CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797          614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL  693 (927)
Q Consensus       614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  693 (927)
                      ++|++...-+... ..+.+++.+.+.+|.+...  ..+..+..+..+++..|.++..-+.     .              
T Consensus       170 ~~n~i~~ie~~~~-~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l-----~--------------  227 (414)
T KOG0531|consen  170 SYNRIVDIENDEL-SELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL-----N--------------  227 (414)
T ss_pred             Ccchhhhhhhhhh-hhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCc-----c--------------
Confidence            6666632222001 1455666666666665422  1222333333445555555421110     0              


Q ss_pred             ccccccccccceeeeecceeEEeeeccccccccccc--ceeEEEccCCcccccCccccccccCCCEEecccccccccCCc
Q 047797          694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLG--FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPP  771 (927)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  771 (927)
                                                       .+.  +|+.+++++|++.. ++..+..+..+..|++++|++...  .
T Consensus       228 ---------------------------------~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~  271 (414)
T KOG0531|consen  228 ---------------------------------ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--E  271 (414)
T ss_pred             ---------------------------------cchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--c
Confidence                                             011  25788888888854 335667788888899999988866  5


Q ss_pred             cccCCCCCCeEeCCCCcCccc---CCcc-ccCCCCCCeEeCcCCcCcccCC
Q 047797          772 KIGQLKSLDFLDLSRNHFSGN---IPSS-LSLLSGLSVLDLSYNSLSGKIP  818 (927)
Q Consensus       772 ~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~~~~p  818 (927)
                      .+...+.+..+..+.|.+...   .... ....+.++.+.+.+|+.....+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  272 GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            566677888888888887632   2221 4456778888888888876554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.73  E-value=1.4e-09  Score=122.19  Aligned_cols=216  Identities=29%  Similarity=0.316  Sum_probs=139.1

Q ss_pred             CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797          535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR  614 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  614 (927)
                      ..++.+.+..|.+..+-..+..+++|+.|++.+|.|..+. ..+..+++|++|++++|.|+...+  +..++.|+.|+++
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLS  148 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc--hhhccchhhheec
Confidence            3455555666666664445667778888888888877442 225667788888888888775433  5566667888888


Q ss_pred             CCcCCCCCChhhhhcCccCcEEEccCcccceecC-ccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797          615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP-FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL  693 (927)
Q Consensus       615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  693 (927)
                      +|.|. .++. +. .+++|+.+++++|.+...-+ . ...+.+++.+++.+|.+.....  +..                
T Consensus       149 ~N~i~-~~~~-~~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~----------------  206 (414)
T KOG0531|consen  149 GNLIS-DISG-LE-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDL----------------  206 (414)
T ss_pred             cCcch-hccC-Cc-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHH----------------
Confidence            88773 3332 22 36777777777777764433 2 4566777777777777652211  110                


Q ss_pred             ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccC--CCEEecccccccccCCc
Q 047797          694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG--LTALNLSRNNLTGLIPP  771 (927)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~  771 (927)
                                                        +..+..+++..|.++..-+  +..+..  |+.+++++|.+.. ++.
T Consensus       207 ----------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~  249 (414)
T KOG0531|consen  207 ----------------------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPE  249 (414)
T ss_pred             ----------------------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccc-ccc
Confidence                                              1122445777888765433  223333  8889999998873 345


Q ss_pred             cccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797          772 KIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS  814 (927)
Q Consensus       772 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  814 (927)
                      .+..+..+..||+++|+++..  ..+...+.+..+....|++.
T Consensus       250 ~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  250 GLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence            677788889999999988754  23455566777777777765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.71  E-value=1.2e-08  Score=122.43  Aligned_cols=107  Identities=28%  Similarity=0.367  Sum_probs=80.6

Q ss_pred             CCCCeeeCCCCC--CCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCc
Q 047797          114 RGLRHLDLSKND--FGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLR  191 (927)
Q Consensus       114 ~~L~~L~Ls~n~--~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~  191 (927)
                      +.|++|=+.+|.  +... -+.+|..++.|++|||++|.-.+.+|..+++|.+||+|++++..+...+  ..+.+|+.|.
T Consensus       545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP--~~l~~Lk~L~  621 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLP--SGLGNLKKLI  621 (889)
T ss_pred             CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccc--hHHHHHHhhh
Confidence            368888888885  4442 3456888999999999999888899999999999999999888764332  4577888888


Q ss_pred             EEECCCccCCCCCchHHhhcCCCCCCEEEcCCCC
Q 047797          192 HLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCY  225 (927)
Q Consensus       192 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  225 (927)
                      +|++..+.....  ++.....+++|++|.+....
T Consensus       622 ~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  622 YLNLEVTGRLES--IPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eecccccccccc--ccchhhhcccccEEEeeccc
Confidence            888887654432  24455567888888776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=8.6e-10  Score=108.97  Aligned_cols=159  Identities=20%  Similarity=0.207  Sum_probs=102.4

Q ss_pred             CCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCC-CCCCCCchhhcccccc
Q 047797          163 SGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCY-LPPINPSFIWLFNLST  241 (927)
Q Consensus       163 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~~~~  241 (927)
                      +.||++|||...+....-...++.|++|+.|.+.++++.+  ++...+.+-.+|+.|+++.|. ++....  .-+...++
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~--~ll~~scs  260 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENAL--QLLLSSCS  260 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccchhHH--HHHHHhhh
Confidence            3588888877666443333457888999999999999887  678889999999999999884 443322  22333348


Q ss_pred             CccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCc---CCcchhhhcCCCCCEEEccCCc-CCCcCcccccCCCCC
Q 047797          242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQ---GSIPEAFQHMVSLRLLSLASNE-LEGGIPKFFGNMCSL  317 (927)
Q Consensus       242 ~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~---~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L  317 (927)
                      .|..|+++++.++...+...+....++|+.|+++++.-.   ..+..-...+++|.+|||++|. ++...-..|.+++.|
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            899999999887652333345566668888888886421   1222223466777777776653 222222334455555


Q ss_pred             cEEeCCCC
Q 047797          318 NQLYLPRN  325 (927)
Q Consensus       318 ~~L~L~~n  325 (927)
                      ++|.++.|
T Consensus       341 ~~lSlsRC  348 (419)
T KOG2120|consen  341 QHLSLSRC  348 (419)
T ss_pred             eeeehhhh
Confidence            55555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=6.8e-09  Score=102.74  Aligned_cols=215  Identities=22%  Similarity=0.277  Sum_probs=121.2

Q ss_pred             CCCCCCcEEecCCCCccCCCCccccc-CCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccc
Q 047797          160 RDLSGFEYFNVENSNLFSVGSLERLS-HLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFN  238 (927)
Q Consensus       160 ~~l~~L~~L~Ls~~~~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~  238 (927)
                      +.+..++.|.+.++.+-..+....++ .++.++.+||.+|.+++.+++...+.++|.|+.|+++.|.+...+...+  ..
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p  119 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LP  119 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--cc
Confidence            33344555666666665555555554 6788999999999999988888889999999999999998876654211  23


Q ss_pred             cccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcc--cccCCCC
Q 047797          239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPK--FFGNMCS  316 (927)
Q Consensus       239 ~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~  316 (927)
                      . .+|++|-|.+..+.-......+..++ .+++|.++.|++.              .+++..+.+....|.  .+...+.
T Consensus       120 ~-~nl~~lVLNgT~L~w~~~~s~l~~lP-~vtelHmS~N~~r--------------q~n~Dd~c~e~~s~~v~tlh~~~c  183 (418)
T KOG2982|consen  120 L-KNLRVLVLNGTGLSWTQSTSSLDDLP-KVTELHMSDNSLR--------------QLNLDDNCIEDWSTEVLTLHQLPC  183 (418)
T ss_pred             c-cceEEEEEcCCCCChhhhhhhhhcch-hhhhhhhccchhh--------------hhccccccccccchhhhhhhcCCc
Confidence            3 67777777777664312222233333 5666666665332              222222222211110  0111122


Q ss_pred             CcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC--CCCCCCCCEEEccCCcCCCc-chhhhhccCC
Q 047797          317 LNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHLNGT-INKSLSHLFK  393 (927)
Q Consensus       317 L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~  393 (927)
                      +..+..+-|++...             ++++..+.+..|.+......  ...++.+.-|+|+.|+|..- .-+.+.++++
T Consensus       184 ~~~~w~~~~~l~r~-------------Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~  250 (418)
T KOG2982|consen  184 LEQLWLNKNKLSRI-------------FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQ  250 (418)
T ss_pred             HHHHHHHHHhHHhh-------------cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCch
Confidence            22222222222221             22666666666665543333  55566666777777776531 1234566677


Q ss_pred             CCEEecCCcccc
Q 047797          394 LETLSLDGNSFT  405 (927)
Q Consensus       394 L~~L~L~~n~l~  405 (927)
                      |..|.++++.+.
T Consensus       251 l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  251 LVDLRVSENPLS  262 (418)
T ss_pred             hheeeccCCccc
Confidence            777777777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.63  E-value=1.1e-09  Score=120.35  Aligned_cols=199  Identities=29%  Similarity=0.255  Sum_probs=131.5

Q ss_pred             CCCCCEEEccCccccccC-CCcccccCcccEEEcccccccccCCccccCC-CCCCEEecCCCcC----------CCCCCh
Q 047797          557 FNSLSILNLANNRFSGKI-PDSMGFLHNIQTLSLRNNRLNGELPSSLKNC-SKLRVLDLRKNAL----------FGEVPT  624 (927)
Q Consensus       557 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l----------~~~~p~  624 (927)
                      +++++.|.+-.-.-.+.. |-.+..+.+|+.|.+.++.+..  ...+..+ ..|+.|-- +|.+          .|.+..
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN  159 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence            344555544433322222 4456677899999999998863  1112111 12333321 1211          122222


Q ss_pred             hhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccc
Q 047797          625 CVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYI  704 (927)
Q Consensus       625 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  704 (927)
                      ..  ....|.+.+.++|.+. ....++.-++.|+.|||++|+++..-  .+                             
T Consensus       160 s~--~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~L-----------------------------  205 (1096)
T KOG1859|consen  160 SP--VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NL-----------------------------  205 (1096)
T ss_pred             ch--hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HH-----------------------------
Confidence            22  1346788888889887 55567888899999999999987321  11                             


Q ss_pred             eeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeC
Q 047797          705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDL  784 (927)
Q Consensus       705 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  784 (927)
                                           .-++.|++|||++|.+....--...++. |+.|+|++|.++..  ..+.++.+|+.||+
T Consensus       206 ---------------------r~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  206 ---------------------RRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDL  261 (1096)
T ss_pred             ---------------------Hhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccch
Confidence                                 2345679999999999765443444455 99999999999977  67899999999999


Q ss_pred             CCCcCcccCC-ccccCCCCCCeEeCcCCcCccc
Q 047797          785 SRNHFSGNIP-SSLSLLSGLSVLDLSYNSLSGK  816 (927)
Q Consensus       785 s~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~  816 (927)
                      ++|-|++.-. ..+..|..|+.|+|.+||+.|.
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            9999986432 2245667899999999999875

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=1.1e-08  Score=112.65  Aligned_cols=196  Identities=23%  Similarity=0.260  Sum_probs=99.0

Q ss_pred             CCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCC-------------CC
Q 047797          187 LSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN-------------HL  253 (927)
Q Consensus       187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n-------------~l  253 (927)
                      +++++.|.+-...-.+... |-.+..+.+|++|.+.+|.+.....    +..+-..|++|.-++.             .+
T Consensus        83 lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~G----L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~  157 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKG----LQELRHQLEKLICHNSLDALRHVFASCGGDI  157 (1096)
T ss_pred             HhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhh----hHHHHHhhhhhhhhccHHHHHHHHHHhcccc
Confidence            4555555554444333211 4456667777777777777655221    2222234444433221             01


Q ss_pred             CCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhH
Q 047797          254 PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSE  333 (927)
Q Consensus       254 ~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  333 (927)
                      +  .-|.|.     .|...+.++|.+. .+.+++.-++.|+.|+|++|+++..  +.+..+++|++|||++|.+....--
T Consensus       158 ~--ns~~Wn-----~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l  227 (1096)
T KOG1859|consen  158 S--NSPVWN-----KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQL  227 (1096)
T ss_pred             c--cchhhh-----hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcccccc
Confidence            0  112221     4556666666665 4555666666677777777766643  3566666677777776665522111


Q ss_pred             HHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcc-hhhhhccCCCCEEecCCcccc
Q 047797          334 LIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTI-NKSLSHLFKLETLSLDGNSFT  405 (927)
Q Consensus       334 ~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~  405 (927)
                      ....+       .|+.|.+++|.++. .-.+.++.+|+.||+++|-+.+-- -..+..+..|+.|+|.+|.+-
T Consensus       228 ~~~gc-------~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  228 SMVGC-------KLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             chhhh-------hheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            11111       45666666665542 222455556666666666554321 112334455556666666553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=3.1e-08  Score=86.90  Aligned_cols=87  Identities=29%  Similarity=0.387  Sum_probs=55.6

Q ss_pred             eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN  811 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  811 (927)
                      +.|++++|+|++ +|.++..++.|+.|+++.|.+.. .|..+..+.++-.||..+|.+. ++|-.+-.-+.....+++++
T Consensus        80 t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen   80 TTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             hhhhcchhhhhh-chHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            667777777754 55567777777777777777763 3555666777777777777766 44444322233444556777


Q ss_pred             cCcccCCCCC
Q 047797          812 SLSGKIPLGT  821 (927)
Q Consensus       812 ~l~~~~p~~~  821 (927)
                      +|.+.+|...
T Consensus       157 pl~~~~~~kl  166 (177)
T KOG4579|consen  157 PLGDETKKKL  166 (177)
T ss_pred             cccccCcccc
Confidence            7777776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=8.4e-08  Score=95.18  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=40.1

Q ss_pred             ccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcC-cccccCC
Q 047797          236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNM  314 (927)
Q Consensus       236 l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l  314 (927)
                      ++..++.++.+||.+|.++...-...+....|.|+.|+++.|.+...+...=....+|++|-|.+..+.-.. ...+..+
T Consensus        66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            333445566666666655432222222222235555555555554322111123445555555555443211 1223445


Q ss_pred             CCCcEEeCCCC
Q 047797          315 CSLNQLYLPRN  325 (927)
Q Consensus       315 ~~L~~L~L~~n  325 (927)
                      |.++.|.++.|
T Consensus       146 P~vtelHmS~N  156 (418)
T KOG2982|consen  146 PKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhccc
Confidence            55555555555

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.23  E-value=8.5e-08  Score=99.80  Aligned_cols=187  Identities=17%  Similarity=0.142  Sum_probs=92.7

Q ss_pred             CCCCeeeCCCCC-CCCCCCCccccCCCCCCEEECCCCCC-CCCCCccC-CCCCCCcEEecCCCCccCCCCcccc-cCCCC
Q 047797          114 RGLRHLDLSKND-FGGSPVPEFIGSLSKLRYLNLSCGTP-SSKIPHPF-RDLSGFEYFNVENSNLFSVGSLERL-SHLSS  189 (927)
Q Consensus       114 ~~L~~L~Ls~n~-~~~~~lp~~l~~l~~L~~L~Ls~n~~-~~~~p~~l-~~l~~L~~L~Ls~~~~~~~~~~~~l-~~l~~  189 (927)
                      ..||.|.++++. ....++..+..+++++++|++.+|.. ++..-..+ ..+++|++|++..|..++...+..+ ..+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            357778887774 22233455667788888888877752 22222233 4577778887766555554444432 36777


Q ss_pred             CcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCC-CCCCCCcchhHhhcccC
Q 047797          190 LRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN-HLPSSSVYPWLFNLSRN  268 (927)
Q Consensus       190 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~l~~~~~~  268 (927)
                      |++|+++++.-.....+-....++..++.+.+++|.-.+... +......+..+..+++..+ .+++ ...-.+......
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~-l~~~~~~~~~i~~lnl~~c~~lTD-~~~~~i~~~c~~  295 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA-LLKAAAYCLEILKLNLQHCNQLTD-EDLWLIACGCHA  295 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH-HHHHhccChHhhccchhhhccccc-hHHHHHhhhhhH
Confidence            777777776543333333444555556666555543211111 0111122233444554443 2222 111122333335


Q ss_pred             ccEEEccCCcCcCC-cchhh-hcCCCCCEEEccCCc
Q 047797          269 ILHLDLGFNHLQGS-IPEAF-QHMVSLRLLSLASNE  302 (927)
Q Consensus       269 L~~L~Ls~n~i~~~-~~~~l-~~l~~L~~L~Ls~n~  302 (927)
                      |+.|+.+++...+. .-.++ .++.+|++|.++.++
T Consensus       296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ  331 (483)
T ss_pred             hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence            56666655543211 11122 245555666555553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.17  E-value=6.9e-08  Score=100.44  Aligned_cols=309  Identities=19%  Similarity=0.122  Sum_probs=187.6

Q ss_pred             CCEEEEECCCCchhhhhcccccc--ccCccccCCCCCCeeeCCCCC-CCCCCCCccccCCCCCCEEECCCCC-CCCCCCc
Q 047797           82 GHVKVLNLQTSDHEFARRKFLKG--KISPALLKLRGLRHLDLSKND-FGGSPVPEFIGSLSKLRYLNLSCGT-PSSKIPH  157 (927)
Q Consensus        82 ~~v~~L~L~~~~~~~~~~~~l~g--~~~~~l~~l~~L~~L~Ls~n~-~~~~~lp~~l~~l~~L~~L~Ls~n~-~~~~~p~  157 (927)
                      |+.++++++|.        .-.|  .+-....+++++++|++.++. ++....-..-..+++|++|++..|. ++...-.
T Consensus       138 g~lk~LSlrG~--------r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk  209 (483)
T KOG4341|consen  138 GFLKELSLRGC--------RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK  209 (483)
T ss_pred             ccccccccccc--------ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence            56677777762        1111  122345788999999999885 3333222334578999999999854 3332222


Q ss_pred             -cCCCCCCCcEEecCCCCccCCCCccc-ccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCC-CCCCCCchh
Q 047797          158 -PFRDLSGFEYFNVENSNLFSVGSLER-LSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCY-LPPINPSFI  234 (927)
Q Consensus       158 -~l~~l~~L~~L~Ls~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~  234 (927)
                       -...+++|.+++++.+.-++...+.. ..++.+++.+.+.++.-...+.+...-+.+..+.++++..|. +++..-  .
T Consensus       210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~--~  287 (483)
T KOG4341|consen  210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL--W  287 (483)
T ss_pred             HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH--H
Confidence             23568999999999998877766654 567888888888876655544555555667788888888874 333322  2


Q ss_pred             hccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcC-cCCcchhhh-cCCCCCEEEccCCcCCCc--Cccc
Q 047797          235 WLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHL-QGSIPEAFQ-HMVSLRLLSLASNELEGG--IPKF  310 (927)
Q Consensus       235 ~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i-~~~~~~~l~-~l~~L~~L~Ls~n~l~~~--~p~~  310 (927)
                      .+...+..|+.|+.+++.-.+......+.+...+|+.+.++.++- +..-...++ +++.|+.+++..+.....  +...
T Consensus       288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl  367 (483)
T KOG4341|consen  288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL  367 (483)
T ss_pred             HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence            344445889999999875433255566777777999999999873 322222232 578888888888754311  1222


Q ss_pred             ccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCC-Ccchhhhh
Q 047797          311 FGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLN-GTINKSLS  389 (927)
Q Consensus       311 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~  389 (927)
                      -.+++.|+.|.++++.....  +.+..+..            +          -..+..|+.+.|+++... ...-..+.
T Consensus       368 s~~C~~lr~lslshce~itD--~gi~~l~~------------~----------~c~~~~l~~lEL~n~p~i~d~~Le~l~  423 (483)
T KOG4341|consen  368 SRNCPRLRVLSLSHCELITD--EGIRHLSS------------S----------SCSLEGLEVLELDNCPLITDATLEHLS  423 (483)
T ss_pred             ccCCchhccCChhhhhhhhh--hhhhhhhh------------c----------cccccccceeeecCCCCchHHHHHHHh
Confidence            24667788888877643211  11111110            0          112335666666666543 22334456


Q ss_pred             ccCCCCEEecCCcccccc-cChhhhhcCCCCCEEEc
Q 047797          390 HLFKLETLSLDGNSFTGV-ISETFFSNMSNLQMLFL  424 (927)
Q Consensus       390 ~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L  424 (927)
                      .+++|+.+++.+++-... .-..+-.++|++++..+
T Consensus       424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            677777777777653211 11223456666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.05  E-value=5.5e-06  Score=81.52  Aligned_cols=66  Identities=21%  Similarity=0.084  Sum_probs=34.1

Q ss_pred             CCCCCCEEEccCCcCCCcc----hhhhhccCCCCEEecCCcccccccChhhhh-----cCCCCCEEEccCCccee
Q 047797          366 RFLSLKVLKLGENHLNGTI----NKSLSHLFKLETLSLDGNSFTGVISETFFS-----NMSNLQMLFLADNSLTL  431 (927)
Q Consensus       366 ~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----~l~~L~~L~L~~n~l~~  431 (927)
                      .+.+|++||+.+|.++..-    ...+...+.|++|.+.+|-++..-....+.     ..++|..|...+|...+
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            3456666666666665322    122334455666666666655333332222     24566666666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.97  E-value=3.5e-07  Score=80.41  Aligned_cols=133  Identities=24%  Similarity=0.298  Sum_probs=77.8

Q ss_pred             CceEeCcCCCCCCCCcccc---cCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          537 STFLNLSKNKFSGLPDCWL---NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       537 L~~L~L~~n~l~~lp~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      +..++|++|++-.+++...   ....|+..+|++|.+....+..-...+.++.|++++|.|+ .+|..+..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            3456666676665554433   3445666677777776433333333456777777777777 55666777777777777


Q ss_pred             CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccch
Q 047797          614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK  673 (927)
Q Consensus       614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  673 (927)
                      +.|++ ...|.-+. .+.++-.|+..+|.+. .+|..+..-+..-..++.++.+.+.-+.
T Consensus       108 ~~N~l-~~~p~vi~-~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  108 RFNPL-NAEPRVIA-PLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             ccCcc-ccchHHHH-HHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            77777 45555555 3667777777777665 3333332222333334455555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.96  E-value=9.1e-06  Score=80.01  Aligned_cols=102  Identities=25%  Similarity=0.271  Sum_probs=59.1

Q ss_pred             ccCCCCCCeeeCCCCCCCCCC---CCccccCCCCCCEEECCCCCCCC----CCCccCCCCCCCcEEecCCCCccCCCCcc
Q 047797          110 LLKLRGLRHLDLSKNDFGGSP---VPEFIGSLSKLRYLNLSCGTPSS----KIPHPFRDLSGFEYFNVENSNLFSVGSLE  182 (927)
Q Consensus       110 l~~l~~L~~L~Ls~n~~~~~~---lp~~l~~l~~L~~L~Ls~n~~~~----~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~  182 (927)
                      +..+..+..+|||+|.|....   +...+.+-++|+..++|.-. +|    .+|..+.                  --++
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~------------------~Ll~   86 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLV------------------MLLK   86 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHH------------------HHHH
Confidence            445778888899999886531   23345556777777776432 22    2222110                  0013


Q ss_pred             cccCCCCCcEEECCCccCCCC--CchHHhhcCCCCCCEEEcCCCCCCCCC
Q 047797          183 RLSHLSSLRHLDLSCINLTKS--SDWFQVVSQLHSLKTLVLRSCYLPPIN  230 (927)
Q Consensus       183 ~l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~  230 (927)
                      .+-+|++|+..+||.|.+...  +.....++....|++|.|++|.+..+.
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a  136 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA  136 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence            455667777777777766543  333445666677777777777665443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.78  E-value=8.2e-06  Score=95.71  Aligned_cols=138  Identities=17%  Similarity=0.229  Sum_probs=76.5

Q ss_pred             CCCCeeeCCCCCCCCCCCCccc-cCCCCCCEEECCCCCCCCC-CCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCc
Q 047797          114 RGLRHLDLSKNDFGGSPVPEFI-GSLSKLRYLNLSCGTPSSK-IPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLR  191 (927)
Q Consensus       114 ~~L~~L~Ls~n~~~~~~lp~~l-~~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~  191 (927)
                      .+|++||++|...-...=|..+ ..||.|+.|.+++-.+... .-....++++|..||+|+.++...   ..+++|++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            4677777777543222122223 3467777777776555432 223345677777778777776433   5567777777


Q ss_pred             EEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCc---hhhccccccCccEEEcCCCCCCC
Q 047797          192 HLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPS---FIWLFNLSTSIETLDLSDNHLPS  255 (927)
Q Consensus       192 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~l~~~~~~L~~L~Ls~n~l~~  255 (927)
                      +|.+.+-.+....+ ...+-++++|+.||+|.........-   ..+.+..+|+|+.||.|++.+..
T Consensus       199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            77777766665433 33455566666666666543332210   01111223556666666555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.73  E-value=5.1e-05  Score=71.88  Aligned_cols=59  Identities=27%  Similarity=0.238  Sum_probs=35.4

Q ss_pred             CccEEEccCCCCc--ccCCCCCCCCCCCEEEccCCcCCCcc---hhhhhccCCCCEEecCCccc
Q 047797          346 SLEGLCLYANDIT--GPIPDLGRFLSLKVLKLGENHLNGTI---NKSLSHLFKLETLSLDGNSF  404 (927)
Q Consensus       346 ~L~~L~L~~n~l~--~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~L~~n~l  404 (927)
                      +|+.|.|.+|.+.  +.+..+..+|+|++|.+-+|.++..-   ...+..+++|+.||+..-..
T Consensus        89 ~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   89 NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            4444444444443  23333667778888888777776321   12356788888888876544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.72  E-value=7.1e-05  Score=80.74  Aligned_cols=77  Identities=13%  Similarity=0.197  Sum_probs=54.2

Q ss_pred             ccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCC
Q 047797          578 MGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFI  657 (927)
Q Consensus       578 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  657 (927)
                      +..+.+++.|++++|.++ .+|. +  .++|++|++++|.-...+|..+   .++|+.|++++|.....+|      ++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------ccc
Confidence            445688999999999887 4452 2  3469999999866556777644   3589999999884322444      357


Q ss_pred             CEEEcccccc
Q 047797          658 QVLDLSLNNI  667 (927)
Q Consensus       658 ~~L~Ls~N~l  667 (927)
                      +.|+++.|..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            7788876654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.69  E-value=2e-05  Score=56.31  Aligned_cols=35  Identities=43%  Similarity=0.733  Sum_probs=13.7

Q ss_pred             CCEEecccccccccCCccccCCCCCCeEeCCCCcCc
Q 047797          755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS  790 (927)
Q Consensus       755 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  790 (927)
                      |++|++++|+|+. +|+.++++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            4444444444442 2223444444444444444443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=4.4e-05  Score=54.62  Aligned_cols=39  Identities=36%  Similarity=0.630  Sum_probs=32.5

Q ss_pred             cceeEEEccCCcccccCccccccccCCCEEeccccccccc
Q 047797          729 GFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL  768 (927)
Q Consensus       729 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  768 (927)
                      ++|++|++++|+|+. +|..++++++|++|++++|+++..
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence            357999999999986 565799999999999999999854

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.59  E-value=5.6e-05  Score=88.82  Aligned_cols=92  Identities=13%  Similarity=0.156  Sum_probs=43.2

Q ss_pred             cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcC-CcchhhhcCCCCCEEEccCCcCCCcC------cccccC
Q 047797          241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG-SIPEAFQHMVSLRLLSLASNELEGGI------PKFFGN  313 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~------p~~~~~  313 (927)
                      ++|..||+|+.+++.   ...+.++. +|+.|.+.+=.+.. ..-..+.++++|++||+|........      -+.-..
T Consensus       173 pNL~sLDIS~TnI~n---l~GIS~Lk-nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  173 PNLRSLDISGTNISN---LSGISRLK-NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             CccceeecCCCCccC---cHHHhccc-cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            455555555544422   13344444 45555444443332 11123445555555555544332111      012234


Q ss_pred             CCCCcEEeCCCCCCCCchhHHHh
Q 047797          314 MCSLNQLYLPRNKLSGQLSELIQ  336 (927)
Q Consensus       314 l~~L~~L~L~~n~l~~~~~~~l~  336 (927)
                      +|+|+.||.+++.+....-+.+-
T Consensus       249 LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  249 LPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             CccccEEecCCcchhHHHHHHHH
Confidence            67777777777766655544433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.59  E-value=4.5e-05  Score=75.63  Aligned_cols=116  Identities=23%  Similarity=0.236  Sum_probs=82.0

Q ss_pred             ccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCC--CCCCCCCccCCCCCCCcEEecCCCCccCCCC
Q 047797          103 KGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCG--TPSSKIPHPFRDLSGFEYFNVENSNLFSVGS  180 (927)
Q Consensus       103 ~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~  180 (927)
                      .|.+......+..|+.|++.+..++..   ..+-.+++|++|.+|.|  +.++.++....++++|++|++++|++..+..
T Consensus        32 ~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst  108 (260)
T KOG2739|consen   32 AGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST  108 (260)
T ss_pred             CCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence            344555555666777777777666543   34556889999999999  6777777777778999999999999887777


Q ss_pred             cccccCCCCCcEEECCCccCCCCCchH-HhhcCCCCCCEEEc
Q 047797          181 LERLSHLSSLRHLDLSCINLTKSSDWF-QVVSQLHSLKTLVL  221 (927)
Q Consensus       181 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~l~~l~~L~~L~L  221 (927)
                      +..+..+.+|..|++..|..+...+-- ..+.-+++|++|+-
T Consensus       109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            778888888888888888776643222 23344555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.51  E-value=0.00039  Score=75.14  Aligned_cols=33  Identities=21%  Similarity=0.147  Sum_probs=20.8

Q ss_pred             CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCc
Q 047797          534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANN  568 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n  568 (927)
                      |.+|++|++++|....+|..+.  .+|+.|+++.+
T Consensus       155 PsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        155 SPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            4567777777766555554333  46777777665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.45  E-value=0.00014  Score=69.06  Aligned_cols=87  Identities=20%  Similarity=0.231  Sum_probs=67.3

Q ss_pred             CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEE
Q 047797          114 RGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHL  193 (927)
Q Consensus       114 ~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L  193 (927)
                      .....+||++|.+...   ..+..+++|.+|.|.+|+++..-|.--.-+++|+.|.|.+|++...+++..+..|+.|++|
T Consensus        42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            3566789999988653   4567788999999999998877666555677888888888888888777777778888888


Q ss_pred             ECCCccCCCC
Q 047797          194 DLSCINLTKS  203 (927)
Q Consensus       194 ~Ls~n~l~~~  203 (927)
                      .+-+|+.+..
T Consensus       119 tll~Npv~~k  128 (233)
T KOG1644|consen  119 TLLGNPVEHK  128 (233)
T ss_pred             eecCCchhcc
Confidence            7777776653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.06  E-value=0.0011  Score=61.01  Aligned_cols=121  Identities=21%  Similarity=0.312  Sum_probs=46.0

Q ss_pred             hhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-C
Q 047797          286 AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-L  364 (927)
Q Consensus       286 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l  364 (927)
                      .|.++++|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|..+.      +++.+.+.. .+...... |
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~------~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK------SLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T------T-EEEEETS-TT-EE-TTTT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc------ccccccccc-cccccccccc
Confidence            355555555555553 344344455555555555555543 3333333344433      455555543 22222222 5


Q ss_pred             CCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCC
Q 047797          365 GRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNL  419 (927)
Q Consensus       365 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  419 (927)
                      ..+++|+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            55666666666554 443444456665 677766655 222 3445556666555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.89  E-value=0.00088  Score=66.68  Aligned_cols=42  Identities=24%  Similarity=0.193  Sum_probs=17.9

Q ss_pred             CCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCC
Q 047797          186 HLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLP  227 (927)
Q Consensus       186 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~  227 (927)
                      .|++|+.|++|.|.......+......+|+|+++++++|++.
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            344555555555533222222223333344444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.85  E-value=0.0018  Score=59.67  Aligned_cols=124  Identities=19%  Similarity=0.222  Sum_probs=57.4

Q ss_pred             hhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhcc
Q 047797          260 PWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLS  339 (927)
Q Consensus       260 ~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  339 (927)
                      +..+..+.+|+.+.+.. .+.......|..+++|+.+.+..+ +......+|.++++++.+.+.+ .+.......|..+.
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            33444444666666653 344444556777777777777664 5555556677776777777755 34333344555555


Q ss_pred             CCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCC
Q 047797          340 SGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLE  395 (927)
Q Consensus       340 ~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  395 (927)
                            +|+.+++..+ +...... +.+. +|+.+.+.. .+.......|.++++|+
T Consensus        82 ------~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   82 ------NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ------TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             ------cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence                  7777777665 4433444 7776 888888876 45546666788877764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.38  E-value=0.00068  Score=78.70  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=17.7

Q ss_pred             CCEEEccCCcCCCc-chhhhhc-cCCCCEEecCCccc
Q 047797          370 LKVLKLGENHLNGT-INKSLSH-LFKLETLSLDGNSF  404 (927)
Q Consensus       370 L~~L~Ls~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l  404 (927)
                      ++.|+++.+..... .-..... +..++.+++.++..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            66666666654321 1111111 55667777766654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.00036  Score=69.31  Aligned_cols=84  Identities=23%  Similarity=0.266  Sum_probs=43.2

Q ss_pred             CCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcc
Q 047797          187 LSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLS  266 (927)
Q Consensus       187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~  266 (927)
                      +.+.+.|++-++.+++    .....+++.|+.|.|+-|+++...|    +..+ ++|++|+|..|.|.+..-...+.+++
T Consensus        18 l~~vkKLNcwg~~L~D----Isic~kMp~lEVLsLSvNkIssL~p----l~rC-trLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD----ISICEKMPLLEVLSLSVNKISSLAP----LQRC-TRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccH----HHHHHhcccceeEEeeccccccchh----HHHH-HHHHHHHHHhcccccHHHHHHHhcCc
Confidence            3445555555555554    2445556666666666666666544    3444 66666666666554322222233333


Q ss_pred             cCccEEEccCCcCc
Q 047797          267 RNILHLDLGFNHLQ  280 (927)
Q Consensus       267 ~~L~~L~Ls~n~i~  280 (927)
                       +|+.|.|..|...
T Consensus        89 -sLr~LWL~ENPCc  101 (388)
T KOG2123|consen   89 -SLRTLWLDENPCC  101 (388)
T ss_pred             -hhhhHhhccCCcc
Confidence             4455555444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.00019  Score=71.31  Aligned_cols=83  Identities=23%  Similarity=0.245  Sum_probs=48.4

Q ss_pred             CCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcE
Q 047797          113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRH  192 (927)
Q Consensus       113 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~  192 (927)
                      +...+.|+.-++.++++   ....+++.|++|.||-|.++..-|  +..|++|++|.|..|.+-++..+..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            44566677777777664   234456777777777776654433  5556666666665555555555555555555555


Q ss_pred             EECCCccC
Q 047797          193 LDLSCINL  200 (927)
Q Consensus       193 L~Ls~n~l  200 (927)
                      |-|..|.-
T Consensus        93 LWL~ENPC  100 (388)
T KOG2123|consen   93 LWLDENPC  100 (388)
T ss_pred             HhhccCCc
Confidence            55555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.22  E-value=0.0016  Score=75.56  Aligned_cols=135  Identities=21%  Similarity=0.244  Sum_probs=63.1

Q ss_pred             CCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCC-CCCCCCC-chhhccccccCccEEEcCCCC-CCCCCcchhHh
Q 047797          187 LSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSC-YLPPINP-SFIWLFNLSTSIETLDLSDNH-LPSSSVYPWLF  263 (927)
Q Consensus       187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~~l~  263 (927)
                      ++.|+.|.+..+.-............++.|+.|+++++ ......+ ....+...+++|+.|+++... +++ .....+.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHH
Confidence            45555555555433222223444555666666666552 1111111 001123333666666666665 443 3344444


Q ss_pred             hcccCccEEEccCCc-CcCC-cchhhhcCCCCCEEEccCCcCCCc--CcccccCCCCCcEEeC
Q 047797          264 NLSRNILHLDLGFNH-LQGS-IPEAFQHMVSLRLLSLASNELEGG--IPKFFGNMCSLNQLYL  322 (927)
Q Consensus       264 ~~~~~L~~L~Ls~n~-i~~~-~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L  322 (927)
                      ..+++|++|.+.++. ++.. +-.....+++|++|+++++.....  ......++++|+.|.+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            444467777666555 3322 122234566677777776654311  1222334555555443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.01  E-value=0.0076  Score=35.72  Aligned_cols=12  Identities=67%  Similarity=0.756  Sum_probs=5.3

Q ss_pred             CCEEeccccccc
Q 047797          755 LTALNLSRNNLT  766 (927)
Q Consensus       755 L~~L~Ls~N~l~  766 (927)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.88  E-value=0.0099  Score=35.23  Aligned_cols=12  Identities=58%  Similarity=0.949  Sum_probs=5.9

Q ss_pred             eeEEEccCCccc
Q 047797          731 VKYLDLSSNKLC  742 (927)
Q Consensus       731 L~~LdLs~N~l~  742 (927)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344555555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.45  E-value=0.0021  Score=72.52  Aligned_cols=88  Identities=27%  Similarity=0.331  Sum_probs=39.3

Q ss_pred             CCCCCcEEeCCCCCCCCchhH----HHhhccCCCcCCCccEEEccCCCCccc-----CCCCCCC-CCCCEEEccCCcCCC
Q 047797          313 NMCSLNQLYLPRNKLSGQLSE----LIQNLSSGCTVNSLEGLCLYANDITGP-----IPDLGRF-LSLKVLKLGENHLNG  382 (927)
Q Consensus       313 ~l~~L~~L~L~~n~l~~~~~~----~l~~l~~~~~~~~L~~L~L~~n~l~~~-----~~~l~~l-~~L~~L~Ls~n~l~~  382 (927)
                      ...++++|.+.+|.++...-.    .+...+     ..+..+++..|.+.+.     .|.+..+ ..+++++++.|.++.
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~-----~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGE-----SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccc-----hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            355666666666665532211    111111     0144455555554422     1112233 345555555555554


Q ss_pred             cch----hhhhccCCCCEEecCCcccc
Q 047797          383 TIN----KSLSHLFKLETLSLDGNSFT  405 (927)
Q Consensus       383 ~~~----~~l~~l~~L~~L~L~~n~l~  405 (927)
                      .-.    ..+..++.++++.++.|.+.
T Consensus       277 ~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  277 KGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cchHHHHHHHhhhHHHHHhhcccCccc
Confidence            322    22334445555555555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.08  E-value=0.0018  Score=72.97  Aligned_cols=108  Identities=26%  Similarity=0.282  Sum_probs=53.8

Q ss_pred             CCEEEccCccccccCC----CcccccCcccEEEcccccccccCCc----cccCC-CCCCEEecCCCcCCCCC----Chhh
Q 047797          560 LSILNLANNRFSGKIP----DSMGFLHNIQTLSLRNNRLNGELPS----SLKNC-SKLRVLDLRKNALFGEV----PTCV  626 (927)
Q Consensus       560 L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l-~~L~~L~Ls~N~l~~~~----p~~~  626 (927)
                      +..+.+.+|.+.....    ..+...+.|+.|++++|.+.+..-.    .+... ..|++|++..|.+++..    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6677777777764322    2344456677777777766632211    11121 34555666666654332    2223


Q ss_pred             hhcCccCcEEEccCcccce----ecCcccc----CCCCCCEEEccccccc
Q 047797          627 GGSLQNLIILRLKSNNFHG----NIPFQLC----HLAFIQVLDLSLNNIS  668 (927)
Q Consensus       627 ~~~l~~L~~L~L~~n~l~~----~~~~~l~----~l~~L~~L~Ls~N~l~  668 (927)
                      . ....++.++++.|.+..    .++..+.    ...++++|.+++|.++
T Consensus       169 ~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  169 E-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             h-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            2 24555566666665521    1122222    2445555555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.20  E-value=0.015  Score=56.64  Aligned_cols=83  Identities=24%  Similarity=0.259  Sum_probs=72.3

Q ss_pred             cceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeC
Q 047797          729 GFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDL  808 (927)
Q Consensus       729 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  808 (927)
                      ...+.||++.|++.. .-..|+-++.|..|+++.|.+. ..|..+++...+..+++.+|..+ ..|.++..++.++++++
T Consensus        42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            345889999999854 3456778889999999999998 56889999999999999999998 68999999999999999


Q ss_pred             cCCcCc
Q 047797          809 SYNSLS  814 (927)
Q Consensus       809 s~N~l~  814 (927)
                      -.|+|.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            999875

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.30  E-value=0.27  Score=26.92  Aligned_cols=13  Identities=31%  Similarity=0.491  Sum_probs=4.5

Q ss_pred             CceEeCcCCCCCC
Q 047797          537 STFLNLSKNKFSG  549 (927)
Q Consensus       537 L~~L~L~~n~l~~  549 (927)
                      |+.|++++|+++.
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.52  E-value=0.5  Score=29.17  Aligned_cols=15  Identities=47%  Similarity=0.554  Sum_probs=8.3

Q ss_pred             CCCCeEeCCCCcCcc
Q 047797          777 KSLDFLDLSRNHFSG  791 (927)
Q Consensus       777 ~~L~~L~Ls~N~l~~  791 (927)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00370        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            455555555555553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.52  E-value=0.5  Score=29.17  Aligned_cols=15  Identities=47%  Similarity=0.554  Sum_probs=8.3

Q ss_pred             CCCCeEeCCCCcCcc
Q 047797          777 KSLDFLDLSRNHFSG  791 (927)
Q Consensus       777 ~~L~~L~Ls~N~l~~  791 (927)
                      ++|++|+|++|+|+.
T Consensus         2 ~~L~~L~L~~N~l~~   16 (26)
T smart00369        2 PNLRELDLSNNQLSS   16 (26)
T ss_pred             CCCCEEECCCCcCCc
Confidence            455555555555553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.16  E-value=0.48  Score=29.26  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=13.1

Q ss_pred             ccCCCEEecccccccccCCccc
Q 047797          752 LVGLTALNLSRNNLTGLIPPKI  773 (927)
Q Consensus       752 l~~L~~L~Ls~N~l~~~~p~~l  773 (927)
                      +++|++|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566777777777765543333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.16  E-value=0.48  Score=29.26  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=13.1

Q ss_pred             ccCCCEEecccccccccCCccc
Q 047797          752 LVGLTALNLSRNNLTGLIPPKI  773 (927)
Q Consensus       752 l~~L~~L~Ls~N~l~~~~p~~l  773 (927)
                      +++|++|+|++|+|+...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566777777777765543333

>TIGR00864 PCC polycystin cation channel protein

Probab=82.23  E-value=0.61  Score=61.89  Aligned_cols=46  Identities=26%  Similarity=0.173  Sum_probs=38.4

Q ss_pred             eCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcc
Q 047797          783 DLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNA  828 (927)
Q Consensus       783 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~  828 (927)
                      ||++|+|+...+..|..+++|+.|+|++|+|.|.|...+...|+..
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~   46 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEE   46 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence            6889999977778899999999999999999999997655555543

Note: this model has been restricted to the amino half because for technical reasons.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.15  E-value=0.065  Score=52.39  Aligned_cols=81  Identities=20%  Similarity=0.263  Sum_probs=47.8

Q ss_pred             CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797          536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK  615 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  615 (927)
                      ..+.||++.|++..+-.-|.-++.+..|+++.|.+. ..|..++....+..+++.+|..+ ..|.++...+.++++++.+
T Consensus        43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence            345556666655554445555556666666666665 45555666666666666666555 4555666666666666666


Q ss_pred             CcC
Q 047797          616 NAL  618 (927)
Q Consensus       616 N~l  618 (927)
                      |.+
T Consensus       121 ~~~  123 (326)
T KOG0473|consen  121 TEF  123 (326)
T ss_pred             Ccc
Confidence            654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.38  E-value=0.48  Score=45.75  Aligned_cols=64  Identities=28%  Similarity=0.310  Sum_probs=25.9

Q ss_pred             hhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCC-CCCCCCcchhHhhcccCccEEEcc
Q 047797          209 VVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN-HLPSSSVYPWLFNLSRNILHLDLG  275 (927)
Q Consensus       209 ~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~l~~~~~~L~~L~Ls  275 (927)
                      .+.+++.++.|.+.+|.--+... +..+++..++|+.|++++| +|++ .-..++..++ +|+.|.+.
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~lk-nLr~L~l~  184 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITD-GGLACLLKLK-NLRRLHLY  184 (221)
T ss_pred             HHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCeech-hHHHHHHHhh-hhHHHHhc
Confidence            34444455555555543211110 0122223355666666655 2333 3333333333 44444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	927
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-45
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-45
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-11
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-05
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		2e-04
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		3e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  180 bits (457), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 207/675 (30%), Positives = 300/675 (44%), Gaps = 125/675 (18%)
Query: 278 HLQGSIPEAFQHMVSLRLLSLASNELEGGIPKF--FGNMCSLNQLYLPRNKLSGQLSELI 335
           H+ GS+   F+   SL  L L+ N L G +      G+   L  L +  N L     +  
Sbjct: 88  HINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-----DFP 141
Query: 336 QNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLS-----LKVLKLGENHLNGTINKSLSH 390
             +S G  +NSLE L L AN I+G    +G  LS     LK L +  N ++G ++  +S 
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISG-ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 198
Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT------------LKL----S 434
              LE L +  N+F+  I   F  + S LQ L ++ N L+            LKL    S
Sbjct: 199 CVNLEFLDVSSNNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 435 HDWV------PAFQLKWLSLASCKMGPHFPNWLQTQ-NQLISLDISNIGISDTIPDWF-- 485
           + +V      P   L++LSLA  K     P++L    + L  LD+S       +P +F  
Sbjct: 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 486 ---------------WDLSIE-------LFFLNLSNNHISGKLPD-LSVLKSDDIVIDIS 522
                           +L ++       L  L+LS N  SG+LP+ L+ L +  + +D+S
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 523 SNNFDGPIPP----LPSNS-TFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPD 576
           SNNF GPI P     P N+   L L  N F+G +P    N + L  L+L+ N  SG IP 
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 577 SMG------------------------FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLD 612
           S+G                        ++  ++TL L  N L GE+PS L NC+ L  + 
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 613 LRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672
           L  N L GE+P  + G L+NL IL+L +N+F GNIP +L     +  LDL+ N  +G IP
Sbjct: 497 LSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTL---- 728
                 S  I   ++N I G     +   G         N LL ++G   E  + L    
Sbjct: 556 AAMFKQSGKI---AANFIAGKRYVYIKNDGMKKECHGAGN-LLEFQGIRSEQLNRLSTRN 611
Query: 729 --------------------GFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL 768
                               G + +LD+S N L   IP+EI  +  L  LNL  N+++G 
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 769 IPPKIGQLKSLDFLDLSRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIPLGTQLQSFNA 828
           IP ++G L+ L+ LDLS N   G IP                N+LSG IP   Q ++F  
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731
Query: 829 SVYAGNLELCGLPLP 843
           + +  N  LCG PLP
Sbjct: 732 AKFLNNPGLCGYPLP 746

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  180 bits (457), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 207/675 (30%), Positives = 300/675 (44%), Gaps = 125/675 (18%)
Query: 278 HLQGSIPEAFQHMVSLRLLSLASNELEGGIPKF--FGNMCSLNQLYLPRNKLSGQLSELI 335
           H+ GS+   F+   SL  L L+ N L G +      G+   L  L +  N L     +  
Sbjct: 85  HINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-----DFP 138
Query: 336 QNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLS-----LKVLKLGENHLNGTINKSLSH 390
             +S G  +NSLE L L AN I+G    +G  LS     LK L +  N ++G ++  +S 
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISG-ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSR 195
Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT------------LKL----S 434
              LE L +  N+F+  I   F  + S LQ L ++ N L+            LKL    S
Sbjct: 196 CVNLEFLDVSSNNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 435 HDWV------PAFQLKWLSLASCKMGPHFPNWLQTQ-NQLISLDISNIGISDTIPDWF-- 485
           + +V      P   L++LSLA  K     P++L    + L  LD+S       +P +F  
Sbjct: 254 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 486 ---------------WDLSIE-------LFFLNLSNNHISGKLPD-LSVLKSDDIVIDIS 522
                           +L ++       L  L+LS N  SG+LP+ L+ L +  + +D+S
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 523 SNNFDGPIPP----LPSNS-TFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPD 576
           SNNF GPI P     P N+   L L  N F+G +P    N + L  L+L+ N  SG IP 
Sbjct: 374 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 577 SMG------------------------FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLD 612
           S+G                        ++  ++TL L  N L GE+PS L NC+ L  + 
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 613 LRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672
           L  N L GE+P  + G L+NL IL+L +N+F GNIP +L     +  LDL+ N  +G IP
Sbjct: 494 LSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTL---- 728
                 S  I   ++N I G     +   G         N LL ++G   E  + L    
Sbjct: 553 AAMFKQSGKI---AANFIAGKRYVYIKNDGMKKECHGAGN-LLEFQGIRSEQLNRLSTRN 608
Query: 729 --------------------GFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL 768
                               G + +LD+S N L   IP+EI  +  L  LNL  N+++G 
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 769 IPPKIGQLKSLDFLDLSRNHFSGNIPXXXXXXXXXXXXXXXYNSLSGKIPLGTQLQSFNA 828
           IP ++G L+ L+ LDLS N   G IP                N+LSG IP   Q ++F  
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 728
Query: 829 SVYAGNLELCGLPLP 843
           + +  N  LCG PLP
Sbjct: 729 AKFLNNPGLCGYPLP 743

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 23/205 (11%)
Query: 481 IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP----LPSN 536
           IP     L+ +L +L +++ ++SG +PD        + +D S N   G +PP    LP N
Sbjct: 93  IPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-N 150
Query: 537 STFLNLSKNKFSG-LPDCWLNFNSL-SILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL 594
              +    N+ SG +PD + +F+ L + + ++ NR +GKIP +   L N+  + L  N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 595 NGE---LPSSLKNCSKLRVLDLRKNAL---FGEVPTCVGGSLQNLIILRLKSNNFHGNIP 648
            G+   L  S KN  K+    L KN+L    G+V     G  +NL  L L++N  +G +P
Sbjct: 210 EGDASVLFGSDKNTQKIH---LAKNSLAFDLGKV-----GLSKNLNGLDLRNNRIYGTLP 261
Query: 649 FQLCHLAFIQVLDLSLNNISGKIPK 673
             L  L F+  L++S NN+ G+IP+
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 113/277 (40%), Gaps = 16/277 (5%)
Query: 578 MGFLHNIQTLSLRNNRLN---------GELPSSLKNCSKLRVLDLRK-NALFGEVPTCVG 627
           +G L +  T + R N L+           +PSSL N   L  L +   N L G +P  + 
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 628 GSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK-S 686
             L  L  L +   N  G IP  L  +  +  LD S N +SG +P   S+   ++     
Sbjct: 99  -KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 687 SNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP 746
            N I G   +       ++    +    LT K         L FV   DLS N L     
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV---DLSRNMLEGDAS 214
Query: 747 EEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPXXXXXXXXXXXX 806
                      ++L++N+L   +  K+G  K+L+ LDL  N   G +P            
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 807 XXXYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLP 843
              +N+L G+IP G  LQ F+ S YA N  LCG PLP
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNEL 303
           E LDL    L  +++    F     +  L+L +N LQ      F  +  L  L LA+N+L
Sbjct: 38  EKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 304 EGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG-PIP 362
                  F ++  L++LYL  N+L    S +   L+       L+ L L  N +   P  
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAG 149
Query: 363 DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFF 413
              +  +L+ L L  N L    + +   L KL+T++L GN F     ET +
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLY 200

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 20/183 (10%)
Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
           N+  +   LDL  N L     +AF  +  LRLL L  N+L+      F  + +L  L++ 
Sbjct: 34  NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 324 RNKLS----GQLSELIQNLSSGCTVNSLEG--------------LCLYANDITG-PIPDL 364
            NKL     G   +L+         N L+               L L  N++   P    
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 365 GRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFL 424
            +  SLK L+L  N L      +   L +L+TL LD N    V  E  F ++  L+ML L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQL 212
Query: 425 ADN 427
            +N
Sbjct: 213 QEN 215

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 196/464 (42%), Gaps = 60/464 (12%)
Query: 207 FQVVSQLHSLKTLVLRSCYL-PPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNL 265
           FQ + +L +L   +L +  L P +     W  + +TSI+ L L++N L ++S   +    
Sbjct: 191 FQTIGKLFAL---LLNNAQLNPHLTEKLCWELS-NTSIQNLSLANNQLLATSESTFSGLK 246
Query: 266 SRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
             N+  LDL +N+L      +F ++ SLR LSL  N ++   P+ F  + +L  L L R 
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRA 306
Query: 326 KLSGQLSELIQNLSSGCTVNS--------LEGLCLYANDITGPIPD-LGRFLSLKVLKLG 376
                +S     L+S   ++         LE L +  N+I     +     +SLK L L 
Sbjct: 307 FTKQSVS-----LASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLS 361
Query: 377 E-----NHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTL 431
           +       L      SL+H   L TL+L  N  + + + T FS +  L++L L  N +  
Sbjct: 362 KTFTSLQTLTNETFVSLAH-SPLLTLNLTKNHISKIANGT-FSWLGQLRILDLGLNEIEQ 419
Query: 432 KLS-HDW-----VPAFQLKW-----LSLASCKMGPHFPNWLQTQNQLISLDISNIGISDT 480
           KLS  +W     +    L +     LS +S  + P     +  +  L ++DIS       
Sbjct: 420 KLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS------- 472
Query: 481 IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFL 540
            P  F  L   L  L+LSNN+I+    DL     +  ++D   NN               
Sbjct: 473 -PSPFRPLR-NLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA------------- 517
Query: 541 NLSKNKFSGLPDCWLN-FNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
            L K    G P  +L   + L ILNL +N            L  +++++L  N LN   P
Sbjct: 518 RLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEP 577
Query: 600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF 643
               + + LR L+L+KN +        G   QNL  L ++ N F
Sbjct: 578 FIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFNPF 621

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 45/235 (19%)
Query: 208 QVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSR 267
           +  S L  L+ L +   +L  I P      NL +S+  L + DN +    V   +F+  R
Sbjct: 96  KAFSPLRKLQKLYISKNHLVEIPP------NLPSSLVELRIHDNRI--RKVPKGVFSGLR 147
Query: 268 NILHLDLGFNHLQ--GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
           N+  +++G N L+  G  P AF  +  L  L ++  +L G IPK      +LN+L+L  N
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPE--TLNELHLDHN 203
Query: 326 KLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTIN 385
           K                 + ++E            + DL R+  L  L LG N +    N
Sbjct: 204 K-----------------IQAIE------------LEDLLRYSKLYRLGLGHNQIRMIEN 234
Query: 386 KSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPA 440
            SLS L  L  L LD N  + V +     ++  LQ+++L  N++T    +D+ P 
Sbjct: 235 GSLSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQVVYLHTNNITKVGVNDFCPV 287

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 9/162 (5%)
Query: 244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNEL 303
           E LDL    L  +++    F     +  L+L +N LQ      F  +  L  L LA+N+L
Sbjct: 38  EKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 304 EGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG-PIP 362
                  F ++  L++LYL  N+L    S +   L+       L+ L L  N +   P  
Sbjct: 96  ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAG 149
Query: 363 DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
              +  +L+ L L  N L    + +   L KL+T++L GN F
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 215 SLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDL 274
           SL+ L+           +F  +FN  +S+E L ++ N     +  P +F   RN+  LDL
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-QENFLPDIFTELRNLTFLDL 477
Query: 275 GFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
               L+   P AF  + SL++L++ASN+L+      F  + SL +++L  N
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	927
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-70
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-65
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-45
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-50
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-60
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-28
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-30
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-29
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  558 bits (1441), Expect = 0.0
 Identities = 213/833 (25%), Positives = 338/833 (40%), Gaps = 87/833 (10%)

Query: 33  TRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTS 92
           ++ +  E   L++FK  L D+  +L  W S     + C + GV C +    V  ++L + 
Sbjct: 7   SQSLYREIHQLISFKDVLPDK-NLLPDWSSNK---NPCTFDGVTCRD--DKVTSIDLSSK 60

Query: 93  DHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPS 152
                        +S +LL L GL  L LS +   GS V  F    + L  L+LS  + S
Sbjct: 61  PLNVGF-----SAVSSSLLSLTGLESLFLSNSHINGS-VSGF-KCSASLTSLDLSRNSLS 113

Query: 153 SKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQ 212
             +                        +L  L   S L+ L++S   L           +
Sbjct: 114 GPVT-----------------------TLTSLGSCSGLKFLNVSSNTLDFPGK-VSGGLK 149

Query: 213 LHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHL 272
           L+SL+ L L +  +   N     L +    ++ L +S N +        +     N+  L
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD---VDVSRCV-NLEFL 205

Query: 273 DLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLS 332
           D+  N+    IP       +L+ L ++ N+L G   +       L  L +  N+  G + 
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264

Query: 333 ELIQNLSSGCTVNSLEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHLNGTINKSLSH 390
                L S      L+ L L  N  TG IPD   G   +L  L L  NH  G +      
Sbjct: 265 P--LPLKS------LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLAS 450
              LE+L+L  N+F+G +       M  L++L L+ N  +                    
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-------------------- 356

Query: 451 CKMGPHFPNWL-QTQNQLISLDISNIGISDTIPDWFWDLSIE-LFFLNLSNNHISGKLPD 508
              G   P  L      L++LD+S+   S  I           L  L L NN  +GK+P 
Sbjct: 357 ---GE-LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412

Query: 509 LSVLKSDDIVIDISSNNFDGPIPPLPSNST---FLNLSKNKFSG-LPDCWLNFNSLSILN 564
                S+ + + +S N   G IP    + +    L L  N   G +P   +   +L  L 
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 565 LANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPT 624
           L  N  +G+IP  +    N+  +SL NNRL GE+P  +     L +L L  N+  G +P 
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 625 CVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQE 684
            +G   ++LI L L +N F+G IP  +   +      ++ N I+GK      N  M  + 
Sbjct: 533 ELG-DCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKEC 587

Query: 685 KSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEA 744
             +  ++            +      +     + G         G + +LD+S N L   
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647

Query: 745 IPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLS 804
           IP+EI  +  L  LNL  N+++G IP ++G L+ L+ LDLS N   G IP ++S L+ L+
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707

Query: 805 VLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGR 857
            +DLS N+LSG IP   Q ++F  + +  N  LCG PLP          +  +
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  270 bits (693), Expect = 2e-79
 Identities = 160/745 (21%), Positives = 261/745 (35%), Gaps = 117/745 (15%)

Query: 113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVEN 172
              +  L+L+ N     P   F    S+L  L++   T S   P   + L   +  N+++
Sbjct: 24  PTNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 173 SNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPS 232
            N  S  S +  +  ++L  L L   ++ K                           N  
Sbjct: 83  -NELSQLSDKTFAFCTNLTELHLMSNSIQKI-------------------------KNNP 116

Query: 233 FIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQ--HM 290
           F+   NL     TLDLS N L SS+       L  N+  L L  N +Q    E       
Sbjct: 117 FVKQKNL----ITLDLSHNGL-SSTKLGTQVQLE-NLQELLLSNNKIQALKSEELDIFAN 170

Query: 291 VSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGL 350
            SL+ L L+SN+++   P  F  +  L  L+L   +L   L+E    L       S+  L
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE---KLCLELANTSIRNL 227

Query: 351 CLYANDITGPIPDLGRFL---SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGV 407
            L  + ++         L   +L +L L  N+LN   N S + L +LE   L+ N+   +
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 408 ISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQL 467
            S +    + N++ L L  +     +S   +P                      Q    L
Sbjct: 288 FSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKID---------------DFSFQWLKCL 331

Query: 468 ISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFD 527
             L++ +  I     + F  L   L +L+LSN+  S                 +++  F 
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSL--------------RTLTNETFV 376

Query: 528 GPIPPLPSNS-TFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSM-GFLHNI 584
                L  +    LNL+KNK S +  D +     L +L+L  N    ++       L NI
Sbjct: 377 S----LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 585 QTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFG-EVPTCVGGSLQNLIILRLKSNNF 643
             + L  N+      +S      L+ L LR+ AL   +        L+NL IL L +NN 
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 644 HGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK---------SSNPIIGLA 694
                  L  L  +++LDL  NN++           +   +           SN    + 
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG 754
            E+         F+ L  +                  K +DL  N L         + V 
Sbjct: 553 VEV---------FKDLFEL------------------KIIDLGLNNLNTLPASVFNNQVS 585

Query: 755 LTALNLSRNNLTGLIPPKIG-QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813
           L +LNL +N +T +     G   ++L  LD+  N F     S    ++ ++    +   L
Sbjct: 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL 645

Query: 814 SGKIPLGTQLQSFNASVYAGNLELC 838
           S      T        V   +   C
Sbjct: 646 SSHYLCNTPPHYHGFPVRLFDTSSC 670

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  264 bits (676), Expect = 6e-77
 Identities = 123/666 (18%), Positives = 209/666 (31%), Gaps = 105/666 (15%)

Query: 189 SLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDL 248
           S    D S + LT+  D         ++  L L    L  +  +    F   + + +LD+
Sbjct: 5   SHEVADCSHLKLTQVPDDL-----PTNITVLNLTHNQLRRLPAA---NFTRYSQLTSLDV 56

Query: 249 SDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIP 308
             N +  S + P L      +  L+L  N L     + F    +L  L L SN ++    
Sbjct: 57  GFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 309 KFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL 368
             F    +L  L L  N LS         L +      L+ L L  N I     +     
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN------LQELLLSNNKIQALKSEELDIF 168

Query: 369 ---SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFS--NMSNLQMLF 423
              SLK L+L  N +          + +L  L L+       ++E        ++++ L 
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 424 LADNSLTLKLSHDW---VPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDT 480
           L+++ L+   S+     +    L  L L+   +     +      QL    +    I   
Sbjct: 229 LSNSQLS-TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 481 IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDI---------VIDISSNNFDGPIP 531
                  L   + +LNL  +     +   S+ K DD           +++  N+  G   
Sbjct: 288 FSHSLHGLF-NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 532 PLPSNST---FLNLSKNKFSGLPDCWLNF-----NSLSILNLANNRFSGKIPDSMGFLHN 583
            + +      +L+LS +  S        F     + L ILNL  N+ S    D+  +L +
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 584 IQTLSLRNNRLNGELP-SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNN 642
           ++ L L  N +  EL     +    +  + L  N             + +L  L L+   
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRRVA 465

Query: 643 FHG--NIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVV 700
                + P     L  + +LDLS NNI+            +                   
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL------------------- 506

Query: 701 PGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL--------CEAIPEEITDL 752
                                          + LDL  N L               +  L
Sbjct: 507 -------------------------------EILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNS 812
             L  LNL  N    +       L  L  +DL  N+ +    S  +    L  L+L  N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 813 LSGKIP 818
           ++    
Sbjct: 596 ITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  250 bits (641), Expect = 4e-72
 Identities = 123/590 (20%), Positives = 198/590 (33%), Gaps = 90/590 (15%)

Query: 240 STSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLA 299
           + S E  D S   L          +L  NI  L+L  N L+      F     L  L + 
Sbjct: 3   TVSHEVADCSHLKLTQVP-----DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 300 SNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG 359
            N +    P+    +  L  L L  N+LS    +     +      +L  L L +N I  
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT------NLTELHLMSNSIQK 111

Query: 360 PIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETF-FSNMS 417
              +   +  +L  L L  N L+ T   +   L  L+ L L  N    + SE       S
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

Query: 418 NLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQ---NQLISLDISN 474
           +L+ L L+ N +       +    +L  L L + ++GP     L  +     + +L +SN
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 475 IGISDTIPDWFWDLSI-ELFFLNLSNNHISGKLPD----LSVLKSDDIVIDISSNNFDGP 529
             +S T    F  L    L  L+LS N+++    D    L  L+       +  NN    
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE----YFFLEYNNIQHL 287

Query: 530 IPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSL 589
                   +   L   ++  L        S +  +++          S  +L  ++ L++
Sbjct: 288 FS-----HSLHGLFNVRYLNLK------RSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 590 RNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVP---TCVGGSLQNLIILRLKSNNFHGN 646
            +N + G   +       L+ L L  +          T V  +   L IL L  N     
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 647 IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYY 706
                  L  ++VLDL LN I  ++                    GL N           
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELT--------------GQEWRGLEN----------- 431

Query: 707 FRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLT 766
                                   +  + LS NK  +        +  L  L L R  L 
Sbjct: 432 ------------------------IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 767 GL--IPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
            +   P     L++L  LDLS N+ +      L  L  L +LDL +N+L+
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  232 bits (594), Expect = 1e-65
 Identities = 113/587 (19%), Positives = 207/587 (35%), Gaps = 70/587 (11%)

Query: 102 LKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRD 161
           ++   +   +K + L  LDLS N    + +      L  L+ L LS     +        
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDI 167

Query: 162 L--SGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKS-SDWFQVVSQLHSLKT 218
              S  +   + + N     S      +  L  L L+ + L  S ++   +     S++ 
Sbjct: 168 FANSSLKKLELSS-NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 219 LVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNH 278
           L L +  L   + +        T++  LDLS N+L  + V    F     + +  L +N+
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKW-TNLTMLDLSYNNL--NVVGNDSFAWLPQLEYFFLEYNN 283

Query: 279 LQGSIPEAFQHMVSLRLLSLASN---------ELEGGIPKFFGNMCSLNQLYLPRNKLSG 329
           +Q     +   + ++R L+L  +          L       F  +  L  L +  N + G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343

Query: 330 QLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL-----SLKVLKLGENHLNGTI 384
             S +   L +      L+ L L  +  +        F+      L +L L +N ++   
Sbjct: 344 IKSNMFTGLIN------LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 385 NKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLK 444
           + + S L  LE L L  N     ++   +  + N+  ++L+ N       + +     L+
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 445 WLSLASCKMG--PHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHI 502
            L L    +      P+  Q    L  LD+SN  I++   D    L  +L  L+L +N++
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILDLQHNNL 516

Query: 503 SGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSI 562
           +                 +  +   G                    GL         L I
Sbjct: 517 A----------------RLWKHANPGGPIYF-------------LKGLS-------HLHI 540

Query: 563 LNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEV 622
           LNL +N F     +    L  ++ + L  N LN    S   N   L+ L+L+KN +    
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 623 PTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG 669
               G + +NL  L ++ N F            F+  ++ +  NI  
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESI---AWFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  147 bits (373), Expect = 8e-37
 Identities = 86/525 (16%), Positives = 161/525 (30%), Gaps = 126/525 (24%)

Query: 101 FLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFR 160
            L    + +   L  L +  L  N+         +  L  +RYLNL              
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVRYLNLK------------- 304

Query: 161 DLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLV 220
                                       S     +S  +L K  D       L  L+ L 
Sbjct: 305 ---------------------------RSFTKQSISLASLPKIDD--FSFQWLKCLEHLN 335

Query: 221 LRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLF-NLSRNIL-HLDLGFNH 278
           +    +P I  +      L  +++ L LS++     ++    F +L+ + L  L+L  N 
Sbjct: 336 MEDNDIPGIKSNM--FTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 279 LQGSIPEAFQHMVSLRLLSLASNELEGGIP-KFFGNMCSLNQLYLPRNKLSGQLSELIQN 337
           +     +AF  +  L +L L  NE+   +  + +  + ++ ++YL  NK           
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 338 LSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG--TINKSLSHLFKLE 395
           +                              SL+ L L    L    +       L  L 
Sbjct: 453 VP-----------------------------SLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 396 TLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGP 455
            L L  N+   +  +     +  L++L L  N+L                  L       
Sbjct: 484 ILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLA----------------RLWKHANPG 526

Query: 456 HFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSD 515
               +L+  + L  L++ + G  +   + F DL  EL  ++L  N+++            
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNT----------- 574

Query: 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL--NFNSLSILNLANNRFSGK 573
                + ++ F+        +   LNL KN  + +        F +L+ L++  N F   
Sbjct: 575 -----LPASVFNN-----QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624

Query: 574 IPDSMGFLHNIQTLSLRNNRLNGEL----PSSLKNCSKLRVLDLR 614
                 F++ I         L+       P        +R+ D  
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG-FPVRLFDTS 668

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 83  HVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLR 142
            +++L+LQ ++     +    G     L  L  L  L+L  N F   P  E    L +L+
Sbjct: 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELK 563

Query: 143 YLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLT- 201
            ++L     ++     F +    +  N++ + + SV          +L  LD+       
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

Query: 202 --KSSDWFQVVSQLHSLKTLVLRS---CYLPP 228
             +S  WF             L S   C  PP
Sbjct: 624 TCESIAWFVNWINETHTNIPELSSHYLCNTPP 655

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  244 bits (626), Expect = 1e-70
 Identities = 121/609 (19%), Positives = 192/609 (31%), Gaps = 99/609 (16%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
           NL  S + LDLS N L    +  + F     +  LDL    +Q     A+Q +  L  L 
Sbjct: 25  NLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI 357
           L  N ++      F  + SL +L      L+   +  I +L +      L+ L +  N I
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT------LKELNVAHNLI 136

Query: 358 TG-PIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLE----TLSLDGNSFTGVISET 411
               +P+      +L+ L L  N +       L  L ++     +L L  N    +    
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 412 FFSNMSNLQMLFLADNSLTLKLSHDWVPAF-QLKWLSLASCKMGPHFPNWLQTQNQLISL 470
           F      L  L L +N  +L +    +     L+   L   +           ++ L  L
Sbjct: 197 F--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 471 DISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPI 530
               I                L +L+   + I      L+ + S      + S   +   
Sbjct: 255 CNLTI------------EEFRLAYLDYYLDDIIDLFNCLTNVSS----FSLVSVTIERVK 298

Query: 531 P-PLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSL 589
                     L L   KF   P   L     S+  L      G    S   L +++ L L
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 590 RNNRLN--GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI 647
             N L+  G    S    + L+ LDL  N +           L+ L  L  + +N     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQMS 412

Query: 648 PFQ-LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYY 706
            F     L  +  LD+S  +        F+  S +                         
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL------------------------- 447

Query: 707 FRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAI-PEEITDLVGLTALNLSRNNL 765
                                    + L ++ N   E   P+  T+L  LT L+LS+  L
Sbjct: 448 -------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 766 TGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIP-----LG 820
             L P     L SL  L++S N+F          L+ L VLD S N +            
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542

Query: 821 TQLQSFNAS 829
           + L   N +
Sbjct: 543 SSLAFLNLT 551

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  238 bits (610), Expect = 2e-68
 Identities = 120/665 (18%), Positives = 204/665 (30%), Gaps = 115/665 (17%)

Query: 188 SSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLD 247
            S ++LDLS   L               L+ L L  C +  I       +   + + TL 
Sbjct: 28  FSTKNLDLSFNPLRHLGS--YSFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLI 82

Query: 248 LSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGG- 306
           L+ N +   S+    F+   ++  L     +L         H+ +L+ L++A N ++   
Sbjct: 83  LTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 307 IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGR 366
           +P++F N+ +L  L L  NK+       ++ L           L L  N +    P   +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ--MPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 367 FLSLKVLKLGENHLNGTINK-SLSHLFKLETLSLDGNSFTGV--ISETFFSNMSNLQMLF 423
            + L  L L  N  +  + K  +  L  LE   L    F     + +   S +  L  L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 424 LADNSLT-LKLSHDWVPAF-----QLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGI 477
           + +  L  L    D +         +   SL S  +                L++ N   
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316

Query: 478 SDTIPDWFWDLSIELFFLNLSNNHIS-GKLPDLSVLKSDDIVIDISSN--NFDGPIPPLP 534
                     L    F  N   N  S   LP L  L       D+S N  +F G      
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL-------DLSRNGLSFKGCCSQSD 369

Query: 535 SNST---FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSM-GFLHNIQTLSLR 590
             +T   +L+LS N    +   +L    L  L+  ++        S+   L N+  L + 
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 591 NNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ 650
           +              S L VL +  N+        +   L+NL                 
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL----------------- 472

Query: 651 LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYL 710
                    LDLS   +    P  F++ S +                             
Sbjct: 473 -------TFLDLSQCQLEQLSPTAFNSLSSL----------------------------- 496

Query: 711 DNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIP 770
                                + L++S N            L  L  L+ S N++     
Sbjct: 497 ---------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 771 PKIGQL-KSLDFLDLSRNHFSGNIPSS--LSLLSGLSVLDLSYNSLSGKIPL---GTQLQ 824
            ++     SL FL+L++N F+        L  +     L +    +    P    G  + 
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

Query: 825 SFNAS 829
           S N +
Sbjct: 596 SLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  228 bits (584), Expect = 6e-65
 Identities = 118/587 (20%), Positives = 209/587 (35%), Gaps = 42/587 (7%)

Query: 116 LRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL 175
            ++LDLS N         F  S  +L+ L+LS     +     ++ LS      +   N 
Sbjct: 30  TKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL-TGNP 87

Query: 176 FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIW 235
               +L   S LSSL+ L     NL    +    +  L +LK L +    +         
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLP--E 143

Query: 236 LFNLSTSIETLDLSDNHL--PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSL 293
            F+  T++E LDLS N +     +    L  +    L LDL  N +    P AF+ +  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 294 RLLSLASNELEGGIPK-FFGNMCSLNQLYLPRNKLSG--QLSELIQNLSSGCTVNSLEGL 350
             L+L +N     + K     +  L    L   +      L +  ++   G    ++E  
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 351 CL-YANDITGPIPDLGRFL-SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVI 408
            L Y +     I DL   L ++    L    +    +   S+ F  + L L    F    
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFP 320

Query: 409 SETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG--PHFPNWLQTQNQ 466
           +        +L+ L    N      S   +P   L++L L+   +               
Sbjct: 321 TLKL----KSLKRLTFTSNKGGNAFSEVDLP--SLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 467 LISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP-----DLSVLKSDDIVIDI 521
           L  LD+S  G+  T+   F  L  +L  L+  ++++           L  L      +DI
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLI----YLDI 428

Query: 522 SSNNFDGPIPPLPSNST---FLNLSKNKFSG--LPDCWLNFNSLSILNLANNRFSGKIPD 576
           S  +       + +  +    L ++ N F    LPD +    +L+ L+L+  +     P 
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 577 SMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIIL 636
           +   L ++Q L++ +N          K  + L+VLD   N +       +     +L  L
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548

Query: 637 RLKSNNFHGNIPFQ--LCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
            L  N+F      Q  L  +   + L + +  +    P       ++
Sbjct: 549 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  170 bits (434), Expect = 7e-45
 Identities = 96/528 (18%), Positives = 171/528 (32%), Gaps = 56/528 (10%)

Query: 101 FLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFR 160
            L    +  +  L+ L+ L+++ N      +PE+  +L+ L +L+LS     S      R
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 161 DLSGFEYFNVE---NSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLK 217
            L      N+    + N  +         +  L  L L   N    +     +  L  L+
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRN-NFDSLNVMKTCIQGLAGLE 228

Query: 218 TLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHL----PSSSVYPWLFNLSRNILHLD 273
              L             +  +    +  L + +  L            LFN   N+    
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 274 LGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSE 333
           L    ++      F +    + L L + +          ++  L                
Sbjct: 289 LVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN----------- 335

Query: 334 LIQNLSSGCTVNSLEGLCLYANDIT--GPIPD-LGRFLSLKVLKLGENHLNGTINKSLSH 390
              N  S   + SLE L L  N ++  G          SLK L L  N +  T++ +   
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 394

Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLAS 450
           L +LE L    ++   +   + F ++ NL  L ++     +  +  +     L+ L +A 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 451 CK-MGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDL 509
                   P+       L  LD+S   +    P  F  LS  L  LN+S+N+        
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTF- 512

Query: 510 SVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL--NFNSLSILNLAN 567
                              P   L  +   L+ S N         L    +SL+ LNL  
Sbjct: 513 -------------------PYKCLN-SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 568 NRFSGKIP--DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613
           N F+        + ++ + + L +   R+    PS  +    + VL L
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG---MPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (356), Expect = 5e-35
 Identities = 65/344 (18%), Positives = 104/344 (30%), Gaps = 44/344 (12%)

Query: 88  NLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLS 147
           NL   +   A   +    I      L  +    L            +      L  +N  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 148 CGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWF 207
            G   +      + L                G+      L SL  LDLS   L+      
Sbjct: 316 FGQFPTLKLKSLKRL---------TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 208 QVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSR 267
           Q      SLK L L    +  ++ +F+ L      +E LD   ++L        +F   R
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGL----EQLEHLDFQHSNL-KQMSEFSVFLSLR 421

Query: 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNMCSLNQLYLPRNK 326
           N+++LD+   H + +    F  + SL +L +A N  +    P  F  + +L  L L + +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 327 LSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINK 386
           L         +LS                             SL+VL +  N+       
Sbjct: 482 LEQLSPTAFNSLS-----------------------------SLQVLNMSHNNFFSLDTF 512

Query: 387 SLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
               L  L+ L    N       +      S+L  L L  N   
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  129 bits (326), Expect = 3e-31
 Identities = 64/348 (18%), Positives = 103/348 (29%), Gaps = 27/348 (7%)

Query: 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKI 574
           +I       NF      LP ++  L+LS N    L    + +F  L +L+L+        
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 575 PDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLI 634
             +   L ++ TL L  N +      +    S L+ L   +  L       +G  L+ L 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLK 127

Query: 635 ILRLKSNNFHG-NIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK-----SSN 688
            L +  N      +P    +L  ++ LDLS N I             M         S N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 689 PIIGLANEILVVPGYIYYFRYLD--NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP 746
           P+  +                L   N   +    +   +  L  ++   L   +      
Sbjct: 188 PMNFIQPGAFKEI----RLHKLTLRNNFDSLNVMKTCIQG-LAGLEVHRLVLGEFRNEGN 242

Query: 747 EEITD---LVGLTALNLSRNNLTGL------IPPKIGQLKSLDFLDLSRNHFSGNIPSSL 797
            E  D   L GL  L +    L  L      I      L ++    L             
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--F 300

Query: 798 SLLSGLSVLDLSYNSLSGKIPLG-TQLQSFNASVYAGNLELCGLPLPN 844
           S   G   L+L          L    L+    +   G      + LP+
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  228 bits (584), Expect = 5e-68
 Identities = 87/347 (25%), Positives = 137/347 (39%), Gaps = 61/347 (17%)

Query: 506 LPDLSVLKSDDIVIDISSNNFDGPIPPLPSNS---TFLNLSKNKFSG---LPDCWLNFNS 559
           L + + L S     D  +  + G +    + +     L+LS         +P    N   
Sbjct: 18  LGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77

Query: 560 LSILNLAN-NRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
           L+ L +   N   G IP ++  L  +  L + +  ++G +P  L     L  LD   NAL
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 619 FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLA-FIQVLDLSLNNISGKIPKCFSN 677
            G +P  +  SL NL+ +    N   G IP      +     + +S N ++GKIP  F+N
Sbjct: 138 SGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 678 FSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLS 737
            ++                                                    ++DLS
Sbjct: 197 LNL---------------------------------------------------AFVDLS 205

Query: 738 SNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSL 797
            N L                ++L++N+L   +  K+G  K+L+ LDL  N   G +P  L
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 798 SLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPN 844
           + L  L  L++S+N+L G+IP G  LQ F+ S YA N  LCG PLP 
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  157 bits (399), Expect = 1e-42
 Identities = 76/306 (24%), Positives = 121/306 (39%), Gaps = 37/306 (12%)

Query: 355 NDITGPIPD-LGRFLSLKVLKLGENHLNGT--INKSLSHLFKLETLSL-DGNSFTGVISE 410
               G + D   +   +  L L   +L     I  SL++L  L  L +   N+  G I  
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 411 TFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISL 470
              + ++ L  L++   +++                       G   P++L     L++L
Sbjct: 96  AI-AKLTQLHYLYITHTNVS-----------------------GA-IPDFLSQIKTLVTL 130

Query: 471 DISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPD-LSVLKSDDIVIDISSNNFDGP 529
           D S   +S T+P     L   L  +    N ISG +PD           + IS N   G 
Sbjct: 131 DFSYNALSGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189

Query: 530 IPPLPSNS--TFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT 586
           IPP  +N    F++LS+N   G     + +  +   ++LA N  +  +   +G   N+  
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248

Query: 587 LSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN 646
           L LRNNR+ G LP  L     L  L++  N L GE+P   GG+LQ   +    +N     
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCLCG 306

Query: 647 IPFQLC 652
            P   C
Sbjct: 307 SPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  155 bits (395), Expect = 4e-42
 Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 43/297 (14%)

Query: 395 ETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG 454
            T      ++ GV+ +T  +    +  L L+  +L        +P+      SLA+    
Sbjct: 29  PTTDCCNRTWLGVLCDTD-TQTYRVNNLDLSGLNLPKPYP---IPS------SLANLP-- 76

Query: 455 PHFPNWLQTQNQLISLDISNI-GISDTIPDWFWDLSIELFFLNLSNNHISGKLPD----L 509
                       L  L I  I  +   IP     L+ +L +L +++ ++SG +PD    +
Sbjct: 77  -----------YLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQI 124

Query: 510 SVLKSDDIVIDISSNNFDGPIPPLPSNST---FLNLSKNKFSG-LPDCWLNFNSLS-ILN 564
             L      +D S N   G +PP  S+      +    N+ SG +PD + +F+ L   + 
Sbjct: 125 KTLV----TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 565 LANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPT 624
           ++ NR +GKIP +   L N+  + L  N L G+      +    + + L KN+L  ++  
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 625 CVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK--CFSNFS 679
              G  +NL  L L++N  +G +P  L  L F+  L++S NN+ G+IP+      F 
Sbjct: 240 V--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  148 bits (375), Expect = 1e-39
 Identities = 82/369 (22%), Positives = 128/369 (34%), Gaps = 93/369 (25%)

Query: 34  RCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCC--KWRGVRCSNTTGHVKVLNLQT 91
            C  ++++ALL  K+ L +    LSSW       DCC   W GV C   T   +V NL  
Sbjct: 2   LCNPQDKQALLQIKKDLGNPT-TLSSW---LPTTDCCNRTWLGVLCDTDTQTYRVNNLDL 57

Query: 92  SDH---------------------EFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSP 130
           S                              L G I PA+ KL  L +L ++  +  G  
Sbjct: 58  SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-A 116

Query: 131 VPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSL-ERLSHLSS 189
           +P+F+  +  L  L+ S                          N  S G+L   +S L +
Sbjct: 117 IPDFLSQIKTLVTLDFS-------------------------YNALS-GTLPPSISSLPN 150

Query: 190 LRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLS 249
           L  +      ++ +                      +P          + S    ++ +S
Sbjct: 151 LVGITFDGNRISGA----------------------IPD------SYGSFSKLFTSMTIS 182

Query: 250 DNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPK 309
            N L +  + P   NL  N+  +DL  N L+G     F    + + + LA N L   + K
Sbjct: 183 RNRL-TGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 310 FFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLS 369
             G   +LN L L  N++ G L + +  L        L  L +  N++ G IP  G    
Sbjct: 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLK------FLHSLNVSFNNLCGEIPQGGNLQR 292

Query: 370 LKVLKLGEN 378
             V     N
Sbjct: 293 FDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  146 bits (371), Expect = 5e-39
 Identities = 73/327 (22%), Positives = 120/327 (36%), Gaps = 72/327 (22%)

Query: 458 PNWLQTQNQLISLDISNIGIS--DTIPDWFWDLSIELFFLNLSN-NHISGKLPD----LS 510
            +      ++ +LD+S + +     IP    +L   L FL +   N++ G +P     L+
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 511 VLKSDDIVIDISSNNFDGPIPPLPSNST---FLNLSKNKFSG-LPDCWLNFNSLSILNLA 566
            L      + I+  N  G IP   S       L+ S N  SG LP    +  +L  +   
Sbjct: 102 QLH----YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 567 NNRFSGKIPDSMGFLHN-IQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTC 625
            NR SG IPDS G       ++++  NRL G++P +  N + L  +DL +N L G+    
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216

Query: 626 VGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK 685
            G S +N   + L  N+   ++  ++     +  LDL  N I G +P+  +    +    
Sbjct: 217 FG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL---- 270

Query: 686 SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAI 745
                                                           L++S N LC  I
Sbjct: 271 ----------------------------------------------HSLNVSFNNLCGEI 284

Query: 746 PEEITDLVGLTALNLSRNN-LTGLIPP 771
           P+   +L        + N  L G   P
Sbjct: 285 PQG-GNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  137 bits (347), Expect = 9e-36
 Identities = 63/329 (19%), Positives = 114/329 (34%), Gaps = 69/329 (20%)

Query: 210 VSQLHSLKTLVLRSCYL---PPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLS 266
            +Q + +  L L    L    PI  S   L NL   +  L +   +     + P +  L+
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSS---LANLP-YLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 267 RNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNK 326
             + +L +   ++ G+IP+    + +L  L  + N L G +P    ++ +L  +    N+
Sbjct: 102 -QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 327 LSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIP-DLGRFLSLKVLKLGENHLNGTIN 385
           +SG + +   + S          + +  N +TG IP      L+L  + L  N L G  +
Sbjct: 161 ISGAIPDSYGSFSK-----LFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDAS 214

Query: 386 KSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKW 445
                    + + L  NS    + +       NL  L L +N +                
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRI---------------- 256

Query: 446 LSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGK 505
                                             T+P     L   L  LN+S N++ G+
Sbjct: 257 --------------------------------YGTLPQGLTQLK-FLHSLNVSFNNLCGE 283

Query: 506 LPDLSVLKSDDIVIDISSNNF--DGPIPP 532
           +P    L+  D V   ++N      P+P 
Sbjct: 284 IPQGGNLQRFD-VSAYANNKCLCGSPLPA 311

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  123 bits (310), Expect = 7e-31
 Identities = 49/230 (21%), Positives = 78/230 (33%), Gaps = 59/230 (25%)

Query: 597 ELPSSLKNCSKLR----VLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG--NIPFQ 650
           ++   L N + L       D       G +          +  L L   N      IP  
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 651 LCHLAFIQVLDLS-LNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRY 709
           L +L ++  L +  +NN+ G IP   +  + +                            
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQL---------------------------- 103

Query: 710 LDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLI 769
                                  YL ++   +  AIP+ ++ +  L  L+ S N L+G +
Sbjct: 104 ----------------------HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 770 PPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLS-VLDLSYNSLSGKIP 818
           PP I  L +L  +    N  SG IP S    S L   + +S N L+GKIP
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  231 bits (590), Expect = 1e-65
 Identities = 124/595 (20%), Positives = 207/595 (34%), Gaps = 80/595 (13%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
            L  S E L+ S N L   ++    F+   N+  LDL    +     + FQ    L  L 
Sbjct: 30  TLPNSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87

Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI 357
           L +N L            +L  L+  +  +S      + N  +      LE L L +N I
Sbjct: 88  LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT------LESLYLGSNHI 141

Query: 358 TGPIPDLGRFL-SLKVLKLGENHLNGTINKSLSHLFKLETLSLD--GNSFTGVISETFFS 414
           +      G     LKVL    N ++    + +S L +   LSL+  GN   G+    F  
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-- 199

Query: 415 NMSNLQMLFLADNSLTLKL--SHDWVPAFQLKWLSLASCKMGPHFPNWLQ--TQNQLISL 470
           + +  Q L        L +           L   +          P   +   +  + S+
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 471 DISNIGISDTIPDWFWDLSIELFFLNLSNNHISG---KLPDLSVLKSDDIVIDISSNNFD 527
           ++      +   + F   S  L  L+L+  H+S     L  LS LK     + +S+N F+
Sbjct: 260 NLQKHYFFNISSNTFHCFS-GLQELDLTATHLSELPSGLVGLSTLK----KLVLSANKFE 314

Query: 528 GPIPPLPSNST---FLNLSKNKFSGL--PDCWLNFNSLSILNLANNRFSGKIPDSMGF-- 580
                  SN      L++  N         C  N  +L  L+L+++        ++    
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS 640
           L ++Q+L+L  N        + K C +L +LDL    L  +       +L  L +L L  
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

Query: 641 NNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVV 700
           +    +       L  +Q L+L  N+      +  ++                       
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ--------------------- 473

Query: 701 PGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNL 760
                                     TLG ++ L LS   L        T L  +  ++L
Sbjct: 474 --------------------------TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 761 SRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG 815
           S N LT      +  LK + +L+L+ NH S  +PS L +LS    ++L  N L  
Sbjct: 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  219 bits (561), Expect = 1e-61
 Identities = 109/585 (18%), Positives = 187/585 (31%), Gaps = 92/585 (15%)

Query: 244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNEL 303
           +T +  +  L           L  +   L+  FN L       F  +++L  L L   ++
Sbjct: 15  KTYNCENLGLNEIP-----GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 304 EGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD 363
                  F +   L+ L L  N L       +    +      L+ L      I+     
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA------LKHLFFIQTGISSIDFI 123

Query: 364 -LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQML 422
            L    +L+ L LG NH++           KL+ L    N+   +  E   S++     L
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNL 182

Query: 423 FLADNSLTLK-LSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQN--QLISLDISNIGISD 479
            L  N   +  +      +   + L+    +        L+      L      ++   D
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 480 TIPDWFWDLS-IELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNST 538
             P  F  L  + +  +NL  ++                   ISSN F        S   
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFN----------------ISSNTFHCF-----SGLQ 281

Query: 539 FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGEL 598
            L+L+    S LP   +  ++L  L L+ N+F      S     ++  LS++ N    EL
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341

Query: 599 PS-SLKNCSKLRVLDLRKNAL-FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAF 656
            +  L+N   LR LDL  + +   +       +L +L  L L  N               
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

Query: 657 IQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLT 716
           +++LDL+   +  K  +                                 F+ L  +   
Sbjct: 402 LELLDLAFTRLKVKDAQSP-------------------------------FQNLHLL--- 427

Query: 717 WKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG-- 774
                          K L+LS + L  +  +    L  L  LNL  N+       K    
Sbjct: 428 ---------------KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 775 -QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIP 818
             L  L+ L LS    S     + + L  ++ +DLS+N L+    
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  202 bits (515), Expect = 1e-55
 Identities = 105/581 (18%), Positives = 194/581 (33%), Gaps = 55/581 (9%)

Query: 113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVEN 172
                 L+ S N         F   L  L +L+L+           F+     +   +  
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 173 SNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPS 232
            N     +   LS   +L+HL      ++        +    +L++L L S ++  I   
Sbjct: 91  -NPLIFMAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLP 147

Query: 233 FIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRN--ILHLDLGFNHLQGSIPEAFQHM 290
                  +  ++ LD  +N +    +     +  +    L L+L  N + G  P AF   
Sbjct: 148 ---KGFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 291 VSLRLLSLASNELEGGIPK--FFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLE 348
              + L+    +    I K      + SL               ++   +  G    S+E
Sbjct: 203 -VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM----DDEDISPAVFEGLCEMSVE 257

Query: 349 GLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGV 407
            + L  +       +    F  L+ L L   HL+  +   L  L  L+ L L  N F  +
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL 316

Query: 408 ISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQ----LKWLSLASCKMG--PHFPNWL 461
              +  SN  +L  L +  N+  L+L        +    L+ L L+   +         L
Sbjct: 317 CQIS-ASNFPSLTHLSIKGNTKRLELGTG---CLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 462 QTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPD-----LSVLKSDD 516
           +  + L SL++S         + F +   +L  L+L+   +  K        L +LK   
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLK--- 428

Query: 517 IVIDISSNNFDGPIPPLPSNST---FLNLSKNKFSGL----PDCWLNFNSLSILNLANNR 569
            V+++S +  D     L         LNL  N F        +       L IL L+   
Sbjct: 429 -VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 570 FSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGS 629
            S     +   L  +  + L +NRL      +L +   +  L+L  N +   +P+ +   
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL-PI 545

Query: 630 LQNLIILRLKSNNFHGNIPFQLCHLA-FIQVLDLSLNNISG 669
           L     + L+ N          C    F++    ++  +  
Sbjct: 546 LSQQRTINLRQNPLDCT-----CSNIYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  185 bits (472), Expect = 8e-50
 Identities = 91/524 (17%), Positives = 173/524 (33%), Gaps = 64/524 (12%)

Query: 102 LKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRD 161
           L      AL   + L+HL   +           + +   L  L L     SS        
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 162 LSGFEYFNVENSNLFSV--GSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTL 219
               +  + +N+ +  +    +  L   ++L  L+L+  ++                ++L
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEPG---AFDSAVFQSL 207

Query: 220 VLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHL 279
                    +    +    +  S+      D      S   +      ++  ++L  ++ 
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQ-SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 280 QGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLS 339
                  F     L+ L L +  L   +P     + +L +L L  NK          N  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 340 SGCTVNSLEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHLN--GTINKSLSHLFKLE 395
                 SL  L +  N     +    L    +L+ L L  + +      N  L +L  L+
Sbjct: 326 ------SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 396 TLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGP 455
           +L+L  N    + +E  F     L++L LA   L +K +                     
Sbjct: 380 SLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDA--------------------- 417

Query: 456 HFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSD 515
              +  Q  + L  L++S+  +  +    F  L   L  LNL  NH              
Sbjct: 418 --QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPK----------- 463

Query: 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKI 574
                  +N+              L LS    S +      +   ++ ++L++NR +   
Sbjct: 464 --GNIQKTNSLQT-----LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 575 PDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
            +++  L  I  L+L +N ++  LPS L   S+ R ++LR+N L
Sbjct: 517 IEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  155 bits (395), Expect = 7e-40
 Identities = 77/461 (16%), Positives = 134/461 (29%), Gaps = 82/461 (17%)

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
           S + L+   N L    N + S L  L  L L       +  +TF  +   L  L L  N 
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF-QSQHRLDTLVLTANP 92

Query: 429 LTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL 488
           L             LK L      +       L  Q  L SL + +  IS       +  
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 489 SIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPS-NSTFLNLSKNKF 547
             +L  L+  NN I                  +S  +       L    +  LNL+ N  
Sbjct: 153 E-KLKVLDFQNNAIHY----------------LSKEDMSS----LQQATNLSLNLNGNDI 191

Query: 548 SGLPDCWLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLSLRNNRLNGELPSSLKNC 605
           +G+     +      LN    +    I   +    + ++   +  +       P+  +  
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 606 SK--LRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLS 663
            +  +  ++L+K+  F             L  L L + +    +P  L  L+ ++ L LS
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309

Query: 664 LNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHE 723
            N          SN                                              
Sbjct: 310 ANKFENLCQISASN---------------------------------------------- 323

Query: 724 YKSTLGFVKYLDLSSNKLCEAIPEE-ITDLVGLTALNLSRNNLT--GLIPPKIGQLKSLD 780
                  + +L +  N     +    + +L  L  L+LS +++        ++  L  L 
Sbjct: 324 ----FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 781 FLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
            L+LS N        +      L +LDL++  L  K     
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  136 bits (344), Expect = 2e-33
 Identities = 62/365 (16%), Positives = 111/365 (30%), Gaps = 47/365 (12%)

Query: 469 SLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPD----LSVLKSDDIVIDISSN 524
           + +  N+G++  IP     L      L  S N +          L  L      +D++  
Sbjct: 16  TYNCENLGLN-EIPG---TLPNSTECLEFSFNVLPTIQNTTFSRLINLT----FLDLTRC 67

Query: 525 NFDGPIPPLPSNST---FLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGF 580
                      +      L L+ N    + +  L    +L  L       S      +  
Sbjct: 68  QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN 127

Query: 581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK- 639
              +++L L +N ++           KL+VLD + NA+       +   LQ    L L  
Sbjct: 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLSLNL 186

Query: 640 SNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSN---FSMMIQEKSSNPIIGLANE 696
           + N    I       A  Q L+         I K   N    S+ +          ++  
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLT 756
           +      +                          V+ ++L  +              GL 
Sbjct: 247 VFEGLCEMS-------------------------VESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 757 ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGK 816
            L+L+  +L+  +P  +  L +L  L LS N F      S S    L+ L +  N+   +
Sbjct: 282 ELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 817 IPLGT 821
           +  G 
Sbjct: 341 LGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (336), Expect = 2e-32
 Identities = 59/310 (19%), Positives = 105/310 (33%), Gaps = 12/310 (3%)

Query: 513 KSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFS 571
           K  +   +  +   +     LP+++  L  S N    + +       +L+ L+L   +  
Sbjct: 11  KEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 572 GKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQ 631
               D+    H + TL L  N L     ++L     L+ L   +  +       +    +
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHN-QK 129

Query: 632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK---SSN 688
            L  L L SN+       +      ++VLD   N I     +  S+           + N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 689 PIIGLANEILVVPGYIY-YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPE 747
            I G+         +    F    N+L+ +KG ++    +L              +  P 
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL---WLGTFEDMDDEDISPA 246

Query: 748 EITDLVG--LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSV 805
               L    + ++NL ++    +          L  LDL+  H S  +PS L  LS L  
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKK 305

Query: 806 LDLSYNSLSG 815
           L LS N    
Sbjct: 306 LVLSANKFEN 315

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (268), Expect = 4e-24
 Identities = 63/328 (19%), Positives = 100/328 (30%), Gaps = 62/328 (18%)

Query: 102 LKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRD 161
            +     +      L HL +  N          + +L  LR L+LS              
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS-------------- 358

Query: 162 LSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVL 221
                     +    S     +L +LS L+ L+LS              ++  SLKT   
Sbjct: 359 ---------HDDIETSDCCNLQLRNLSHLQSLNLSY-------------NEPLSLKTEAF 396

Query: 222 RSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG 281
           + C                  +E LDL+   L         F     +  L+L  + L  
Sbjct: 397 KEC----------------PQLELLDLAFTRL-KVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 282 SIPEAFQHMVSLRLLSLASNELEGGI---PKFFGNMCSLNQLYLPRNKLSGQLSELIQNL 338
           S  + F  + +L+ L+L  N    G          +  L  L L    LS        +L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 339 SSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLS 398
                   +  + L  N +T    +    L    L L  NH++  +   L  L +  T++
Sbjct: 500 K------MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTIN 553

Query: 399 LDGNSFTGVISETFFSNMSNLQMLFLAD 426
           L  N      S  +F       M  L D
Sbjct: 554 LRQNPLDCTCSNIYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.5 bits (207), Expect = 1e-16
 Identities = 36/275 (13%), Positives = 66/275 (24%), Gaps = 80/275 (29%)

Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE 621
             N  N   + +IP      ++ + L    N L     ++      L  LDL        
Sbjct: 16  TYNCENLGLN-EIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT------- 65

Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
                                 +            +  L L+ N +        S     
Sbjct: 66  ------------------RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG---- 103

Query: 682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL 741
                                                            +K+L      +
Sbjct: 104 ----------------------------------------------PKALKHLFFIQTGI 117

Query: 742 CEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLS 801
                  + +   L +L L  N+++ +  PK    + L  LD   N         +S L 
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 802 GLSV--LDLSYNSLSGKIPLGTQLQSFNASVYAGN 834
             +   L+L+ N ++G  P       F +  + G 
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  229 bits (585), Expect = 9e-65
 Identities = 100/683 (14%), Positives = 203/683 (29%), Gaps = 113/683 (16%)

Query: 37  DEEREALLTFKQSLVDEYGVLSS-WGSEDGK------------------RDCCKWR---G 74
           D      L+     + +Y  L   W + +GK                  ++   W    G
Sbjct: 15  DAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPG 74

Query: 75  VRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSP---V 131
           V  ++  G V  L+L+             G++  A+ +L  L  L L  +    +     
Sbjct: 75  VSLNSN-GRVTGLSLEGFG--------ASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 132 PEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLS-SL 190
           P+ I +                            +      ++     S+++ S ++   
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 191 RHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSD 250
             +     N+T  S       +L  L+   + +      N    W             + 
Sbjct: 186 TQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSPFVAENICEAWEN----------ENS 232

Query: 251 NHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNEL------- 303
            +          ++  +++  +++        +P   + +  ++L+++A N         
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 304 -EGGIPKFFGNMCSLNQLYLPRNKL-SGQLSELIQNLSSGCTVNSLEGLCLYANDITGPI 361
            +            +  +Y+  N L +  +   +Q +        L  L    N + G +
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK------LGMLECLYNQLEGKL 346

Query: 362 PDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQM 421
           P  G  + L  L L  N +            ++E LS   N    + +     ++S +  
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 422 LFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTI 481
           +  + N +                      K              + S+++SN  IS   
Sbjct: 407 IDFSYNEIG-----------------SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 482 PDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNS--TF 539
            + F   S  L  +NL  N ++                 I  N+         +    T 
Sbjct: 450 KELFSTGS-PLSSINLMGNMLTE----------------IPKNSLKDENENFKNTYLLTS 492

Query: 540 LNLSKNKFSGLPD--CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN------ 591
           ++L  NK + L D         L  ++L+ N FS   P        ++   +RN      
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 592 NRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQL 651
           NR   E P  +  C  L  L +  N +  +V   +     N+ +L +K N         +
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI---TPNISVLDIKDNPNISIDLSYV 607

Query: 652 CHLAFIQVLDLSLNNISGKIPKC 674
           C      +  L  +     I  C
Sbjct: 608 CPYIEAGMYMLFYDKTQ-DIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  229 bits (585), Expect = 1e-64
 Identities = 86/628 (13%), Positives = 175/628 (27%), Gaps = 105/628 (16%)

Query: 211 SQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNI- 269
           +    +  L L         P  I    L T +E L L  +    +        +S N+ 
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAI--GQL-TELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 270 -LHLDLGFNHLQGSIPEA--FQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNK 326
                    H Q +  +    +    L    + S+  +  I K         Q+    N 
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 327 LSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINK 386
           ++  +S+ +  L+       L    +  +             + +           T + 
Sbjct: 195 ITF-VSKAVMRLTK------LRQFYMGNSPFVAENI----CEAWENENSEYAQQYKTEDL 243

Query: 387 SLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWL 446
              +L  L  + +        +       +  +Q++ +A N                   
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGI---------------- 286

Query: 447 SLASCKMGPHFPNWLQTQNQLISLDISNIGISD-TIPDWFWDLSIELFFLNLSNNHISGK 505
           S    K             ++  + I    +    +      +  +L  L    N + GK
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGMLECLYNQLEGK 345

Query: 506 LPDLSVLKSDDIVIDISSNNFDGPIPPLPSNST---FLNLSKNKFSGLPD--CWLNFNSL 560
           LP           ++++ N            +     L+ + NK   +P+     + + +
Sbjct: 346 LPAFGSEIKL-ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404

Query: 561 SILNLANNRFSG-------KIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL 613
           S ++ + N            +  +     N+ +++L NN+++          S L  ++L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 614 RKNALFGEVPTCVG------GSLQNLIILRLKSNNFHGNIP-FQLCHLAFIQVLDLSLNN 666
             N L       +        +   L  + L+ N        F+   L ++  +DLS N+
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS 524

Query: 667 ISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKS 726
            S   P    N S +                                             
Sbjct: 525 FSK-FPTQPLNSSTL--------------------------------------------K 539

Query: 727 TLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSR 786
             G     D   N+     PE IT    LT L +  N++   +  KI    ++  LD+  
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKD 596

Query: 787 NHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           N       S +       +  L Y+   
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  221 bits (564), Expect = 7e-62
 Identities = 85/565 (15%), Positives = 161/565 (28%), Gaps = 80/565 (14%)

Query: 292 SLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLC 351
            +  LSL      G +P   G +  L  L L  +              S     S E   
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM--SDEQKQ 139

Query: 352 LYANDITGPIPD---LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVI 408
                      D      F  L    +  +    +I KS     K   +    N+ T V 
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 409 SETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLI 468
                  ++ L+  ++ ++                +  +    +              L 
Sbjct: 200 KA--VMRLTKLRQFYMGNSPFV-----AENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 469 SLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG---------KLPDLSVLKSDDIVI 519
            +++ N      +P +   L  E+  +N++ N              L D  V +    +I
Sbjct: 253 DVEVYNCPNLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKI-QII 310

Query: 520 DISSNNF-DGPIPPLPSNST---FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIP 575
            I  NN    P+            L    N+  G    + +   L+ LNLA N+ +    
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPA 370

Query: 576 DSMGFLHNIQTLSLRNNRLNGELPSSL--KNCSKLRVLDLRKNALFGEVPTCVG------ 627
           +  GF   ++ LS  +N+L   +P+    K+ S +  +D   N +               
Sbjct: 371 NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 628 GSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK-- 685
               N+  + L +N             + +  ++L  N ++        + +   +    
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 686 ------SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN 739
                   N +  L+++                             +TL ++  +DLS N
Sbjct: 490 LTSIDLRFNKLTKLSDDFRA--------------------------TTLPYLVGIDLSYN 523

Query: 740 KLCEAIPEEITDLVGLTAL------NLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI 793
                 P +  +   L         +   N      P  I    SL  L +  N     +
Sbjct: 524 SF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-V 581

Query: 794 PSSLSLLSGLSVLDLSYNSLSGKIP 818
                +   +SVLD+  N       
Sbjct: 582 NE--KITPNISVLDIKDNPNISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  174 bits (442), Expect = 9e-46
 Identities = 70/503 (13%), Positives = 152/503 (30%), Gaps = 108/503 (21%)

Query: 337 NLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLET 396
               G   N  + L ++       +   GR   +  L L     +G +  ++  L +LE 
Sbjct: 53  GTQPGANWNFNKELDMWGAQPGVSLNSNGR---VTGLSLEGFGASGRVPDAIGQLTELEV 109

Query: 397 LSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPH 456
           L+L  +             +S             +     +V     +  S         
Sbjct: 110 LALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFS--------- 159

Query: 457 FPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS------GKLPDLS 510
                     LI   I++     +I      ++++   +   +N+I+       +L  L 
Sbjct: 160 ---------DLIKDCINSDPQQKSIKKSS-RITLKDTQIGQLSNNITFVSKAVMRLTKLR 209

Query: 511 VLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRF 570
                     + ++ F          +     ++  +      W N   L+ + + N   
Sbjct: 210 QF-------YMGNSPFVAENICEAWENENSEYAQQ-YKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 571 SGKIPDSMGFLHNIQTLSLRNNRL--------NGELPSSLKNCSKLRVLDLRKNALF-GE 621
             K+P  +  L  +Q +++  NR         + +  +      K++++ +  N L    
Sbjct: 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321

Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM 681
           V T +   ++ L +L    N   G +P        +  L+L+ N I+            +
Sbjct: 322 VETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL 741
                                                             + L  + NKL
Sbjct: 380 --------------------------------------------------ENLSFAHNKL 389

Query: 742 CEAIPE--EITDLVGLTALNLSRNNLTGL-------IPPKIGQLKSLDFLDLSRNHFSGN 792
            + IP   +   +  ++A++ S N +  +       + P   +  ++  ++LS N  S  
Sbjct: 390 -KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448

Query: 793 IPSSLSLLSGLSVLDLSYNSLSG 815
                S  S LS ++L  N L+ 
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  150 bits (381), Expect = 5e-38
 Identities = 55/388 (14%), Positives = 119/388 (30%), Gaps = 47/388 (12%)

Query: 447 SLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGK- 505
           +      G      L +  ++  L +   G S  +PD    L+ EL  L L ++      
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKVNE 121

Query: 506 ----LPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG------LPDCWL 555
                  +S   SD+        ++            F +L K+  +       +     
Sbjct: 122 RLFGPKGISANMSDEQ-KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615
                + +   +N  +  +  ++  L  ++   + N+    E                  
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ-- 237

Query: 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF 675
              +         +L++L  + + +      +P  L  L  +Q+++++ N          
Sbjct: 238 ---YKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI------- 286

Query: 676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLD---NVLLTWKGSEHEYKSTLGFVK 732
                      S   +    + L         + +    N L T           +  + 
Sbjct: 287 -----------SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--FPVETSLQKMKKLG 333

Query: 733 YLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792
            L+   N+L E         + L +LNL+ N +T +     G  + ++ L  + N     
Sbjct: 334 MLECLYNQL-EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY- 391

Query: 793 IPSSLSL--LSGLSVLDLSYNSLSGKIP 818
           IP+      +S +S +D SYN +     
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (286), Expect = 3e-26
 Identities = 40/340 (11%), Positives = 93/340 (27%), Gaps = 63/340 (18%)

Query: 503 SGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLS 561
           +  + D   LK     ++  + +  G      +N  F N   + +   P   L +   ++
Sbjct: 26  AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNSNGRVT 84

Query: 562 ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNG----ELPSSLKNCSKLRVLDLRKNA 617
            L+L     SG++PD++G L  ++ L+L ++          P  +            +  
Sbjct: 85  GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144

Query: 618 LFGEVPTCVGG-SLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFS 676
                          +LI   + S+    +I            +    NNI+  + K   
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM 203

Query: 677 NFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDL 736
             + +                                                  +   +
Sbjct: 204 RLTKL--------------------------------------------------RQFYM 213

Query: 737 SSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSS 796
            ++        E  +       N            K   LK L  +++        +P+ 
Sbjct: 214 GNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 797 LSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLE 836
           L  L  + +++++ N       L    Q+   +     ++
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  214 bits (548), Expect = 6e-60
 Identities = 111/608 (18%), Positives = 198/608 (32%), Gaps = 90/608 (14%)

Query: 215 SLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDL 274
           S K + L    L  +       F+  + ++ LDLS   +   ++    ++   ++ +L L
Sbjct: 33  STKNIDLSFNPLKILKSY---SFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLIL 87

Query: 275 GFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG-QLSE 333
             N +Q   P +F  + SL  L     +L        G + +L +L +  N +   +L  
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 334 LIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL-----SLKVLKLGENHLNGTINKSL 388
              NL++      L  + L  N I     +  +FL         L +  N ++  I    
Sbjct: 148 YFSNLTN------LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQA 200

Query: 389 SHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSL 448
               KL  L+L GN  +  I +T   N++ L +  L       + + +      ++ L  
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL-- 258

Query: 449 ASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPD 508
                             +    ++           F  L+  +  ++L+   I   L D
Sbjct: 259 --------------CDVTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSIK-YLED 302

Query: 509 LSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANN 568
           +         + I                  L L+ NK S      +   SLS L+L+ N
Sbjct: 303 VPKHFKWQS-LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK-KVALPSLSYLDLSRN 360

Query: 569 RFSGKIPDSMGFL--HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCV 626
             S     S   L  ++++ L L  N     + ++     +L+ LD + + L        
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 627 GGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKS 686
             SL+ L+ L +   N   +       L  +  L ++ N+                    
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV----------- 468

Query: 687 SNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP 746
                               F    N+                   +LDLS  +L +   
Sbjct: 469 --------------------FANTTNL------------------TFLDLSKCQLEQISW 490

Query: 747 EEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVL 806
                L  L  LN+S NNL  L      QL SL  LD S N    +          L+  
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 807 DLSYNSLS 814
           +L+ NS++
Sbjct: 551 NLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  200 bits (510), Expect = 8e-55
 Identities = 103/544 (18%), Positives = 196/544 (36%), Gaps = 34/544 (6%)

Query: 116 LRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL 175
            +++DLS N         F  + S+L++L+LS     +     +  L       +  + +
Sbjct: 34  TKNIDLSFNPLKILKSYSF-SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 176 FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIW 235
            S  S    S L+SL +L      L         + QL +LK L +   ++         
Sbjct: 93  QSF-SPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLP--A 147

Query: 236 LFNLSTSIETLDLSDNHLPS--SSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSL 293
            F+  T++  +DLS N++ +   +   +L    +  L LD+  N +     +AFQ +  L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL 206

Query: 294 RLLSLASNELEGGIPK-FFGNMCSLNQLYLPRNKLSG--QLSELIQNLSSGCTVNSLEGL 350
             L+L  N     I K    N+  L+   L   +      L     ++  G    +++  
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 351 CLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVIS 409
            L   +             ++  + L    +     + +   FK ++LS+          
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFP- 323

Query: 410 ETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG--PHFPNWLQTQNQL 467
                ++  L+ L L  N  ++      +P   L +L L+   +             N L
Sbjct: 324 ---TLDLPFLKSLTLTMNKGSISFKKVALP--SLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 468 ISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDD--IVIDISSNN 525
             LD+S  G    +   F  L  EL  L+  ++ +   + + S   S +  + +DIS  N
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLE-ELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTN 435

Query: 526 FDGPIPPLPSNST---FLNLSKNKFSG--LPDCWLNFNSLSILNLANNRFSGKIPDSMGF 580
                  +    T    L ++ N F    L + + N  +L+ L+L+  +           
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS 640
           LH +Q L++ +N L     S       L  LD   N +       +    ++L    L +
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI-ETSKGILQHFPKSLAFFNLTN 554

Query: 641 NNFH 644
           N+  
Sbjct: 555 NSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  197 bits (503), Expect = 6e-54
 Identities = 103/617 (16%), Positives = 193/617 (31%), Gaps = 100/617 (16%)

Query: 240 STSIETLDLSDNHL---PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL 296
                T    D  L   P         ++  +  ++DL FN L+     +F +   L+ L
Sbjct: 10  VVPNITYQCMDQKLSKVPD--------DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
            L+  E+E    K +  +  L+ L L  N +          L+S                
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS---------------- 105

Query: 357 ITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNM 416
                        L+ L   E  L    +  +  L  L+ L++  N         +FSN+
Sbjct: 106 -------------LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 417 SNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIG 476
           +NL  + L+ N +        +    L++L               +     +SLD+S   
Sbjct: 153 TNLVHVDLSYNYIQT------ITVNDLQFLR--------------ENPQVNLSLDMSLNP 192

Query: 477 ISDTIPDWFWDLSIELFFLNLSNNHISGKLP-----DLSVLKSDDIVIDISSNNFDGPIP 531
           I       F  +   L  L L  N  S  +      +L+ L    +++    +  +  I 
Sbjct: 193 IDFIQDQAFQGIK--LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 532 PLPSNSTF-------LNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHN 583
                            L+           +    ++S ++LA         + +     
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFK 308

Query: 584 IQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF 643
            Q+LS+   +L       L     L+ L L  N            +L +L  L L  N  
Sbjct: 309 WQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGSISFK---KVALPSLSYLDLSRNAL 362

Query: 644 H--GNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ-EKSSNPIIGLANEILVV 700
              G   +       ++ LDLS N     +   F     +   +   + +  +       
Sbjct: 363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE----- 416

Query: 701 PGYIYYFRYLDNVLLTWKGSEHEYKSTLGFV---KYLDLSSNKLCEAIPEEI-TDLVGLT 756
                    L  + +++  ++ ++      +     L ++ N   +     +  +   LT
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 757 ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGK 816
            L+LS+  L  +       L  L  L++S N+      S  + L  LS LD S+N +   
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 817 IP----LGTQLQSFNAS 829
                     L  FN +
Sbjct: 537 KGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (394), Expect = 1e-39
 Identities = 85/524 (16%), Positives = 172/524 (32%), Gaps = 48/524 (9%)

Query: 101 FLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFR 160
            L    S  + +L  L+ L+++ N      +P +  +L+ L +++LS     +   +  +
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174

Query: 161 DLSGFEYFNVE---NSNLFSVGSLERLSHLSSLRHLDLSCINLTKS--SDWFQVVSQLHS 215
            L      N+    + N       +    +  L  L L     + +      Q ++ LH 
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHV 233

Query: 216 LKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLG 275
            + ++        +      +      +   +    +    S     F+   N+  + L 
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 276 FNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELI 335
              +     E        + LS+   +L+   P    ++  L  L L  NK S       
Sbjct: 294 GVSI--KYLEDVPKHFKWQSLSIIRCQLK-QFP--TLDLPFLKSLTLTMNKGSISFK--K 346

Query: 336 QNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL---SLKVLKLGENHLNGTINKSLSHLF 392
             L       SL  L L  N ++         L   SL+ L L  N     ++ +   L 
Sbjct: 347 VALP------SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLE 399

Query: 393 KLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCK 452
           +L+ L    ++   V   + F ++  L  L ++  +  +     ++    L  L +A   
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459

Query: 453 MGPHFP-NWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSV 511
              +   N       L  LD+S   +       F  L   L  LN+S+N++         
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNNLLF------- 511

Query: 512 LKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRF 570
                    + S++++        + + L+ S N+             SL+  NL NN  
Sbjct: 512 ---------LDSSHYNQ-----LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 571 SGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614
           +  I +   FL  ++        +     ++    +   VLD  
Sbjct: 558 A-CICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFN 600

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 2e-14
 Identities = 41/221 (18%), Positives = 66/221 (29%), Gaps = 56/221 (25%)

Query: 596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLA 655
           G L   ++    +         L  +VP  +  S +    + L  N       +   + +
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLS-KVPDDIPSSTK---NIDLSFNPLKILKSYSFSNFS 56

Query: 656 FIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLL 715
            +Q LDLS   I     K +                                        
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHG-------------------------------------- 78

Query: 716 TWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQ 775
                       L  +  L L+ N +    P   + L  L  L      L  L    IGQ
Sbjct: 79  ------------LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 776 LKSLDFLDLSRNHFSG-NIPSSLSLLSGLSVLDLSYNSLSG 815
           L +L  L+++ N      +P+  S L+ L  +DLSYN +  
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  219 bits (559), Expect = 7e-60
 Identities = 87/648 (13%), Positives = 189/648 (29%), Gaps = 94/648 (14%)

Query: 45  TFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKG 104
            +    ++      +W             GV   N  G V  L+L             KG
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFG--------AKG 337

Query: 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSG 164
           ++  A+ +L  L+ L    +    S        L+                         
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 165 FEYFNVENSNLFSVGSLERLSHLS--SLRHLDLSCIN--LTKSSDWFQVVSQLHSLKTLV 220
               ++    +     ++ +   S  SL+   +  +   +T  S       +L  L+ + 
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI---QRLTKLQIIY 454

Query: 221 LRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQ 280
             +      N +          ++  D + ++          ++  +++  ++L      
Sbjct: 455 FANSPFTYDNIA----------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 281 GSIPEAFQHMVSLRLLSLASNELEG---------GIPKFFGNMCSLNQLYLPRNKLSG-Q 330
             +P+    +  L+ L++A N              +         +   Y+  N L    
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 331 LSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSH 390
            S  +Q +        L  L    N +   +   G  + L  LKL  N +        + 
Sbjct: 565 ASASLQKMV------KLGLLDCVHNKVRH-LEAFGTNVKLTDLKLDYNQIEEIPEDFCAF 617

Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLAS 450
             ++E L    N    + +     ++  +  +  + N +  +  +        K ++   
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN--- 674

Query: 451 CKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLS 510
                             ++ +S   I     + F   S  +  + LSNN ++       
Sbjct: 675 ----------------ASTVTLSYNEIQKFPTELFATGS-PISTIILSNNLMT------- 710

Query: 511 VLKSDDIVIDISSNNFDGPIPPLPSNS--TFLNLSKNKFSGLPDCWL--NFNSLSILNLA 566
                     I  N+         +    T ++L  NK + L D +       LS ++++
Sbjct: 711 ---------SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS 761

Query: 567 NNRFSGKIPDSMGFLHNIQTLSLR------NNRLNGELPSSLKNCSKLRVLDLRKNALFG 620
            N FS   P        ++   +R       NR+  + P+ +  C  L  L +  N +  
Sbjct: 762 YNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R 819

Query: 621 EVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668
           +V   +      L IL +  N         +C      +  L  +   
Sbjct: 820 KVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  205 bits (524), Expect = 3e-55
 Identities = 86/591 (14%), Positives = 177/591 (29%), Gaps = 98/591 (16%)

Query: 263 FNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYL 322
            + +  +  L L     +G +P+A   +  L++LS  ++        F     + +    
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 323 PRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLN- 381
            ++++     ++  +      ++ L    +  N    PI      +SLK  ++G      
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD-SRISLKDTQIGNLTNRI 437

Query: 382 GTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF 441
             I+K++  L KL+ +    + FT       + + ++       +  L+           
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS--------- 488

Query: 442 QLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNH 501
            LK                      L  +++ N      +PD+ +DL  EL  LN++ N 
Sbjct: 489 NLK---------------------DLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNR 526

Query: 502 ISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNST---FLNLSKNKFSGLPDCWLNFN 558
                   +                   +              +  N     P       
Sbjct: 527 GISAAQLKADWTR---------------LADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 559 --SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSL-KNCSKLRVLDLRK 615
              L +L+  +N+      ++ G    +  L L  N++  E+P        ++  L    
Sbjct: 572 MVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628

Query: 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP-----FQLCHLAFIQVLDLSLNNISGK 670
           N L          S+  +  +    N                       + LS N I   
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 671 IPKCFSNFSMMIQ-EKSSNPIIGLANEILV-VPGYIYYFRYLDNVLLTWKGSEHEYKSTL 728
             + F+  S +     S+N +  +    L    G       L                  
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL------------------ 730

Query: 729 GFVKYLDLSSNKLCEAIPEEI--TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSR 786
                +DL  NKL  ++ ++   T L  L+ +++S N  +   P +      L    +  
Sbjct: 731 ---TTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785

Query: 787 ------NHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIP--LGTQLQSFNAS 829
                 N      P+ ++    L  L +  N +  K+   L  QL   + +
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIA 835

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  198 bits (504), Expect = 9e-53
 Identities = 92/705 (13%), Positives = 183/705 (25%), Gaps = 176/705 (24%)

Query: 134 FIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHL 193
            + +  ++  L+L+      ++P                         + +  L+ L+ L
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVP-------------------------DAIGQLTELKVL 352

Query: 194 DLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHL 253
                + T S   F        +         +      F+         + L  + N  
Sbjct: 353 SFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH-YKKMFLDYDQRLNLSDLLQDAINRN 411

Query: 254 PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGN 313
           P          +S     +    N +   I +A Q +  L+++  A++            
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWE 470

Query: 314 MCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKV 372
             + +       K          NL        L  + LY       +PD L     L+ 
Sbjct: 471 DANSDY-----AKQYENEELSWSNLKD------LTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 373 LKLGENHLNG---------TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLF 423
           L +  N              +        K++   +  N+     +      M  L +L 
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 424 LADNSLTLKLSHDWVPAF----QLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISD 479
              N +        + AF    +L  L L                NQ+           +
Sbjct: 580 CVHNKVRH------LEAFGTNVKLTDLKLDY--------------NQI-----------E 608

Query: 480 TIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDD--IVIDISSNNFDGPIPPLPSNS 537
            IP+ F   + ++  L  S+N +   +P++   KS      +D S N        +  + 
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL--- 594
                                + S + L+ N       +       I T+ L NN +   
Sbjct: 668 DDYKGI---------------NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 595 ----NGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ 650
                     + KN   L  +DLR N L          +L  L  + +  N F    P Q
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771

Query: 651 LCHLAFIQVLDLSL------NNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYI 704
             + + ++   +        N I  + P   +    +                       
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL----------------------- 808

Query: 705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNN 764
                                        L + SN + + + E++     L  L+++ N 
Sbjct: 809 ---------------------------IQLQIGSNDIRK-VDEKL--TPQLYILDIADNP 838

Query: 765 LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS 809
              +    +          L  +            + G   L + 
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDK--------TQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  111 bits (279), Expect = 4e-25
 Identities = 39/290 (13%), Positives = 83/290 (28%), Gaps = 22/290 (7%)

Query: 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
           L+    ++          +     N   + +  +    +     +  LSL      G +P
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP 340

Query: 600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQV 659
            ++   ++L+VL    ++            L   +    K           L +   + +
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 660 LDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFR-----YLDNVL 714
            DL  + I+ + P+                I  L N I  +   I         Y  N  
Sbjct: 401 SDLLQDAIN-RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459

Query: 715 LTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG 774
            T+     +++         +    K  E      ++L  LT + L        +P  + 
Sbjct: 460 FTYDNIAVDWED-------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 775 QLKSLDFLDLSRNHFSG---------NIPSSLSLLSGLSVLDLSYNSLSG 815
            L  L  L+++ N              +         + +  + YN+L  
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 2/113 (1%)

Query: 716 TWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQ 775
            W           G V  L L+       +P+ I  L  L  L+   ++ T        +
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 776 LKSLDFLDLSRNHFSGNIPS-SLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFN 827
             + D  +  ++    +     L     L++ DL  ++++ + P    ++  +
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDS 421

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 6e-09
 Identities = 23/190 (12%), Positives = 51/190 (26%), Gaps = 21/190 (11%)

Query: 102 LKGKISPALLKLRGLRHLDLSKNDFG------GSPVPEFIGSLSKLRYLNLSCGTPSSKI 155
           ++   +        +  + LS N           P      +   L  ++L      + +
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR-FNKLTSL 743

Query: 156 P--HPFRDLSGFEYFNVENSNL----FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQV 209
                   L      +V  +          +  +L         D     + +   W   
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ--WPTG 801

Query: 210 VSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNI 269
           ++   SL  L + S  +  ++        L+  +  LD++DN   S  V      +   +
Sbjct: 802 ITTCPSLIQLQIGSNDIRKVDEK------LTPQLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 270 LHLDLGFNHL 279
             L       
Sbjct: 856 YVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 11/85 (12%), Positives = 28/85 (32%)

Query: 734 LDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI 793
            +   +   +    ++ +   +T L+L+     G +P  IGQL  L  L    +  + + 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 794 PSSLSLLSGLSVLDLSYNSLSGKIP 818
                      + +   + +     
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYK 388

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  180 bits (459), Expect = 3e-47
 Identities = 120/588 (20%), Positives = 224/588 (38%), Gaps = 61/588 (10%)

Query: 134 FIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHL 193
           F G ++  R+ NL+      ++P   + L+  E   +  + + +V +      L  L+ L
Sbjct: 4   FDGRIAFYRFCNLT------QVP---QVLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLL 53

Query: 194 DLS--CINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPS-FIWLFNLSTSIETLDLSD 250
           +L      LT   + F+    L +L+ L L S  +  ++P  F  LF+L      L L  
Sbjct: 54  ELGSQYTPLTIDKEAFR---NLPNLRILDLGSSKIYFLHPDAFQGLFHL----FELRLYF 106

Query: 251 NHLPSSSVYPWLFNLSRNILHLDLGFNHLQG-SIPEAFQHMVSLRLLSLASNELEGGIPK 309
             L  + +    F   + +  LDL  N ++   +  +F  + SL+ +  +SN++      
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 310 FFGN--MCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD---- 363
                   +L+   L  N L  ++S       +      LE L +  N  T  I      
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

Query: 364 ---------LGRFLSLKVLKLGENHLNGTINKSLSHLFK--LETLSLDGNSFTGVISETF 412
                    L     +     G +++      + + L +  +  L L        ++   
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRV 285

Query: 413 FSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDI 472
           F  + +L++L LA N +       +     L+ L+L+   +G  + +      ++  +D+
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 473 SNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP 532
               I+      F  L  +L  L+L +N ++  +  +  +      I +S N     +P 
Sbjct: 346 QKNHIAIIQDQTFKFLE-KLQTLDLRDNALT-TIHFIPSIPD----IFLSGNKLVT-LPK 398

Query: 533 LPSNSTFLNLSKNKFSGLPDCW--LNFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLS 588
           +   +  ++LS+N+   L   +  L    L IL L  NRFS             +++ L 
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS-SCSGDQTPSENPSLEQLF 457

Query: 589 LRNNRLNGELPSSL-----KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF 643
           L  N L     + L     +  S L+VL L  N L   +P  V   L  L  L L SN  
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRL 516

Query: 644 HGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPII 691
                  L     +++LD+S N +    P  F + S++  + + N  I
Sbjct: 517 TVLSHNDLPAN--LEILDISRNQLLAPNPDVFVSLSVL--DITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  171 bits (436), Expect = 3e-44
 Identities = 126/590 (21%), Positives = 203/590 (34%), Gaps = 68/590 (11%)

Query: 240 STSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLA 299
           S           +L        +  +      L L FN+++     +F  +  L+LL L 
Sbjct: 3   SFDGRIAFYRFCNLTQ------VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELG 56

Query: 300 SNELEGGI-PKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDIT 358
           S      I  + F N+ +L  L L  +K+     +  Q L        L  L LY   ++
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH------LFELRLYFCGLS 110

Query: 359 GPIPDLGRFL---SLKVLKLGENHLNG-TINKSLSHLFKLETLSLDGNSFTGVISETFFS 414
             +   G F    +L  L L +N +    ++ S   L  L+++    N    V       
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 415 -NMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDIS 473
                L    LA NSL  ++S DW                             L  LD+S
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNP------------------FRNMVLEILDVS 212

Query: 474 NIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL 533
             G +  I   F +   +    +L   H                + D   N F G     
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGA-----GFGFHNIKDPDQNTFAGLAR-- 265

Query: 534 PSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNN 592
            S+   L+LS      L    +     L +LNLA N+ +    ++   L N+Q L+L  N
Sbjct: 266 -SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 593 RLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLC 652
            L     S+     K+  +DL+KN +   +       L+ L  L L+ N         + 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT-----TIH 378

Query: 653 HLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLD- 711
            +  I  + LS N +        +   + +   S N +  L  +IL     + + + L  
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHL---SENRLENL--DILYFLLRVPHLQILIL 433

Query: 712 --NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-----TDLVGLTALNLSRNN 764
             N       S  +  S    ++ L L  N L  A   E+       L  L  L L+ N 
Sbjct: 434 NQNRF--SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491

Query: 765 LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           L  L P     L +L  L L+ N  +  +  +  L + L +LD+S N L 
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  136 bits (343), Expect = 7e-33
 Identities = 96/572 (16%), Positives = 196/572 (34%), Gaps = 77/572 (13%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSG--FE 166
               L+ L  LDLSKN      +    G L+ L+ ++ S         H    L G    
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 167 YFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYL 226
           +F++  ++L+S  S++    ++  R++ L  ++++             +  T+ +   + 
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS------------GNGWTVDITGNFS 225

Query: 227 PPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA 286
             I+ S  +   L+  I       +++       +      ++ HLDL    +       
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 287 FQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS 346
           F+ +  L++L+LA N++     + F  + +L  L L  N L    S     L        
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP------- 338

Query: 347 LEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG 406
                                  +  + L +NH+    +++   L KL+TL L  N+   
Sbjct: 339 ----------------------KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-- 374

Query: 407 VISETFFSNMSNLQMLFLADNSLTLKLSHDWVP-AFQLKWLSLASCKMGPHFPNWLQTQN 465
               T    + ++  +FL+ N L      +       L    L +  +            
Sbjct: 375 ----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV----P 426

Query: 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS---------GKLPDLSVLKSDD 516
            L  L ++    S    D     +  L  L L  N +               LS L+   
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ--- 483

Query: 517 IVIDISSNNFDGPIPPLPSNS----TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSG 572
            V+ ++ N  +  +PP   +       L+L+ N+ + L    L   +L IL+++ N+   
Sbjct: 484 -VLYLNHNYLNS-LPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLA 540

Query: 573 KIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQN 632
             PD      ++  L + +N+   E   S    + L   ++       ++      S   
Sbjct: 541 PNPD---VFVSLSVLDITHNKFICECELS-TFINWLNHTNVTIAGPPADIYCVYPDSFSG 596

Query: 633 LIILRLKSNNFHGNIPFQLCHLAFIQVLDLSL 664
           + +  L +         +    +   V  ++L
Sbjct: 597 VSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTL 628

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  121 bits (304), Expect = 4e-28
 Identities = 87/462 (18%), Positives = 138/462 (29%), Gaps = 102/462 (22%)

Query: 385 NKSLSHLFK----LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPA 440
             +L+ + +     E L L  N     ++ + F  +  LQ+L L      L +       
Sbjct: 13  FCNLTQVPQVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTID------ 65

Query: 441 FQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNN 500
                                +    L  LD+ +  I    PD F  L   LF L L   
Sbjct: 66  -----------------KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF-HLFELRLYFC 107

Query: 501 HISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL--NFN 558
            +S  +      ++                       T L+LSKN+   L         N
Sbjct: 108 GLSDAVLKDGYFRN-------------------LKALTRLDLSKNQIRSLYLHPSFGKLN 148

Query: 559 SLSILNLANNRFSGKIPDSMGFLH--NIQTLSLRNNRLNGELPSSLKNCSK------LRV 610
           SL  ++ ++N+        +  L    +   SL  N L   +      C        L +
Sbjct: 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208

Query: 611 LDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGK 670
           LD+  N                + I    SN    +  F L     I       +NI   
Sbjct: 209 LDVSGNGW-------------TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 671 IPKCFSNFSMMIQEK---SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKST 727
               F+  +         S   +  L + +                             T
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVF---------------------------ET 288

Query: 728 LGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRN 787
           L  +K L+L+ NK+ +   E    L  L  LNLS N L  L       L  + ++DL +N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 788 HFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNAS 829
           H +     +   L  L  LDL  N+L+  I     +     S
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLS 389

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 47/247 (19%), Positives = 85/247 (34%), Gaps = 18/247 (7%)

Query: 77  CSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIG 136
             N    +  +NL  +    +  +     I   LL++  L+ L L++N F      +   
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 137 SLSKLRYLNLSC-----GTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLR 191
               L  L L          +      F  LS  +   + ++ L S+      SHL++LR
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-PPGVFSHLTALR 507

Query: 192 HLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN 251
            L L+   LT  S          +L+ L +    L   NP          S+  LD++ N
Sbjct: 508 GLSLNSNRLTVLSHND----LPANLEILDISRNQLLAPNPDVF------VSLSVLDITHN 557

Query: 252 HLPSSSVYPWLFN-LSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKF 310
                       N L+   + +      +    P++F  + SL  LS    + E  +   
Sbjct: 558 KFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGV-SLFSLSTEGCDEEEVLKSL 616

Query: 311 FGNMCSL 317
             ++  +
Sbjct: 617 KFSLFIV 623

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  169 bits (430), Expect = 1e-44
 Identities = 109/576 (18%), Positives = 192/576 (33%), Gaps = 82/576 (14%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
           NL  S + LDLS N L    +  + F     +  LDL    +Q     A+Q +  L  L 
Sbjct: 25  NLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI 357
           L  N ++      F  + SL +L      L+   +  I +L       +L+ L +  N I
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLI 136

Query: 358 T--GPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLE----TLSLDGNSFTGVISET 411
                        +L+ L L  N +       L  L ++     +L L  N    +    
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 412 FFSNMSNLQMLFLADNSLTLKLSHDW---VPAFQLKWLSLASCKMGPHFPNWLQ------ 462
           F      L  L L +N  +L +       +   ++  L L   +   +   + +      
Sbjct: 197 F--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 463 TQNQLISLDISNIGIS-DTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDI 521
               +    ++ +    D I D F  L+  +   +L +  I  ++ D S        +++
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNFGWQH-LEL 311

Query: 522 SSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNR--FSGKIPDSMG 579
            +  F         +   L  + NK        ++  SL  L+L+ N   F G    S  
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK 639
              +++ L L  N +   + S+     +L  LD + + L       V  SL+NLI L + 
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 640 SNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV 699
             +           L+ ++VL ++ N+                                 
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI------------------------ 465

Query: 700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALN 759
                  F  L N                  + +LDLS  +L +  P     L  L  LN
Sbjct: 466 -------FTELRN------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 760 LSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPS 795
           ++ N L  +      +L SL  + L  N +  + P 
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (412), Expect = 3e-42
 Identities = 115/544 (21%), Positives = 200/544 (36%), Gaps = 49/544 (9%)

Query: 116 LRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL 175
            ++LDLS N         F  S  +L+ L+LS     +     ++ LS      +  + +
Sbjct: 30  TKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 176 FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIW 235
            S+ +L   S LSSL+ L     NL    +    +  L +LK L +    +         
Sbjct: 89  QSL-ALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEY- 144

Query: 236 LFNLSTSIETLDLSDNHLPS--SSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSL 293
            F+  T++E LDLS N + S   +    L  +    L LDL  N +    P AF+ +  L
Sbjct: 145 -FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 294 RLLSLASNELEGGIPK-FFGNMCSLNQLYLPRNKL--SGQLSELIQNLSSGCTVNSLEGL 350
             L+L +N     + K     +  L    L   +    G L +  ++   G    ++E  
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 351 CLYANDITGPIPD--LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVI 408
            L   D              ++    L    +    +   S+ F  + L L    F    
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFP 320

Query: 409 SETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG--PHFPNWLQTQNQ 466
                  + +L+ L    N      S   +P   L++L L+   +               
Sbjct: 321 ----TLKLKSLKRLTFTSNKGGNAFSEVDLP--SLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 467 LISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNF 526
           L  LD+S  G+  T+   F  L  +L  L+  ++++  ++ + SV  S            
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLE-QLEHLDFQHSNLK-QMSEFSVFLS------------ 419

Query: 527 DGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKI-PDSMGFLHNI 584
                    N  +L++S           +   +SL +L +A N F     PD    L N+
Sbjct: 420 -------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 585 QTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
             L L   +L    P++  + S L+VL++  N L   VP  +   L +L  + L +N + 
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

Query: 645 GNIP 648
            + P
Sbjct: 532 CSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  159 bits (403), Expect = 4e-41
 Identities = 92/511 (18%), Positives = 168/511 (32%), Gaps = 39/511 (7%)

Query: 188 SSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLD 247
            S ++LDLS   L     +         L+ L L  C +  I       +   + + TL 
Sbjct: 28  FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLI 82

Query: 248 LSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNEL-EGG 306
           L+ N +   S+    F+   ++  L     +L         H+ +L+ L++A N +    
Sbjct: 83  LTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 307 IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGR 366
           +P++F N+ +L  L L  NK+       ++ L           L L  N +    P   +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ--MPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 367 FLSLKVLKLGENHLNGTI-NKSLSHLFKLETLSLDGNSFTG-----VISETFFSNMSNLQ 420
            + L  L L  N  +  +    +  L  LE   L    F          ++    + NL 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 421 MLFLADNSLTL---KLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGI 477
           +       L      +   +     +   SL S  +     +          L++ N   
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKD-FSYNFGWQHLELVNCKF 316

Query: 478 SDTIPDWFWDLSIELFFLNLSNNHISGKLP--DLSVLKSDDIVIDISSNNFDGPIPPLPS 535
                     L      L  ++N         DL  L+     +D+S N          S
Sbjct: 317 GQFPTLKLKSLK----RLTFTSNKGGNAFSEVDLPSLE----FLDLSRNGLSFKGCCSQS 368

Query: 536 NS-----TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLS 588
           +       +L+LS N    +   +L    L  L+  ++    ++ +   F  L N+  L 
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLD 427

Query: 589 LRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP 648
           + +              S L VL +  N+        +   L+NL  L L         P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 649 FQLCHLAFIQVLDLSLNNISGKIPKCFSNFS 679
                L+ +QVL+++ N +       F   +
Sbjct: 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  152 bits (385), Expect = 7e-39
 Identities = 103/557 (18%), Positives = 175/557 (31%), Gaps = 121/557 (21%)

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
           NL  +  +LDL FN L+     +F     L++L L+  E++      + ++  L+ L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT 383
            N +          LSS                             L+ L   E +L   
Sbjct: 85  GNPIQSLALGAFSGLSS-----------------------------LQKLVAVETNLASL 115

Query: 384 INKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQL 443
            N  + HL  L+ L++  N         +FSN++NL+ L L+ N +              
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ------------- 162

Query: 444 KWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS 503
                             Q     +SLD+S   ++   P  F ++   L  L L NN  S
Sbjct: 163 -------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDS 213

Query: 504 GKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSIL 563
             +    +     + +               +        K+   GL +  +    L+ L
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLGE------FRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 564 NLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSS-LKNCSKLRVLDLRKNALFGEV 622
           +     +   I D    L N+ + SL +  +      S       L +++ +        
Sbjct: 268 DY----YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF---- 319

Query: 623 PTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMI 682
                  L++L  L   SN            L  ++ LDLS N +S              
Sbjct: 320 ---PTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLS-------------F 361

Query: 683 QEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLC 742
           +   S    G  +                                   +KYLDLS N + 
Sbjct: 362 KGCCSQSDFGTTS-----------------------------------LKYLDLSFNGV- 385

Query: 743 EAIPEEITDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHFSGNIPSSLSLLS 801
             +      L  L  L+   +NL  +    +   L++L +LD+S  H         + LS
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 802 GLSVLDLSYNSLSGKIP 818
            L VL ++ NS      
Sbjct: 446 SLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (304), Expect = 1e-28
 Identities = 67/389 (17%), Positives = 124/389 (31%), Gaps = 51/389 (13%)

Query: 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSG 164
            I P   K   L  L L  N    + +   I  L+ L    L  G   ++      D S 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 165 FE--------YFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSL 216
            E         F +   + +    ++  + L+++    L  + + +  D F        L
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHL 309

Query: 217 KTLVLRSCYLPPINPSFIWLFNLS-------------TSIETLDLSDNHLPSSSVYPWLF 263
           + +  +    P +    +     +              S+E LDLS N L          
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIP-KFFGNMCSLNQLYL 322
             + ++ +LDL FN +  ++   F  +  L  L    + L+       F ++ +L  L +
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 323 PRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHL 380
                    + +   LS      SLE L +  N               +L  L L +  L
Sbjct: 429 SHTHTRVAFNGIFNGLS------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 381 NGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPA 440
                 + + L  L+ L++  N     + +  F  +++LQ ++L  N             
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC--------- 532

Query: 441 FQLKWLSLASCKMGPHFPNWLQTQNQLIS 469
                    SC    +   WL   +Q   
Sbjct: 533 ---------SCPRIDYLSRWLNKNSQKEQ 552

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  119 bits (300), Expect = 4e-28
 Identities = 90/461 (19%), Positives = 161/461 (34%), Gaps = 38/461 (8%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
            +  L+ L+ L+++ N      +PE+  +L+ L +L+LS     S      R L      
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 169 NVE---NSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCY 225
           N+    + N  +         +  L  L L   N    +     +  L  L+   L    
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRN-NFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 226 LPPINPSFIWLFNLSTSIETLDLSDNHL----PSSSVYPWLFNLSRNILHLDLGFNHLQG 281
                    +  +    +  L + +  L            LFN   N+    L    ++ 
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 282 SIPEAFQH-MVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSS 340
               ++      L L++    +           + SL +L    NK          N  S
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFP------TLKLKSLKRLTFTSNK--------GGNAFS 342

Query: 341 GCTVNSLEGLCLYANDITGPIPDLGRFL---SLKVLKLGENHLNGTINKSLSHLFKLETL 397
              + SLE L L  N ++             SLK L L  N +  T++ +   L +LE L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 401

Query: 398 SLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHF 457
               ++   +   + F ++ NL  L ++     +  +  +     L+ L +A      +F
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 458 -PNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS----GKLPDLSVL 512
            P+       L  LD+S   +    P  F  LS  L  LN+++N +     G    L+ L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 513 KSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDC 553
           +     I + +N +D   P +   S +LN +  K  G   C
Sbjct: 521 Q----KIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 557

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.0 bits (234), Expect = 5e-20
 Identities = 57/305 (18%), Positives = 86/305 (28%), Gaps = 54/305 (17%)

Query: 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKI 574
           +I       NF      LP ++  L+LS N    L      +F  L +L+L+        
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 575 PDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLI 634
             +   L ++ TL L  N +      +    S L+ L   +  L   +     G L+ L 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLK 127

Query: 635 ILRLKSNNF-HGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693
            L +  N      +P    +L  ++ LDLS N I                          
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-------------- 173

Query: 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLV 753
                                                   LDLS N +   I       +
Sbjct: 174 --------------------------------QMPLLNLSLDLSLNPM-NFIQPGAFKEI 200

Query: 754 GLTALNLSRNNLTGLIPPK-IGQLKSLDFLDLSRNHFSGN---IPSSLSLLSGLSVLDLS 809
            L  L L  N  +  +    I  L  L+   L    F           S L GL  L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 810 YNSLS 814
              L+
Sbjct: 261 EFRLA 265

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.5 bits (204), Expect = 2e-16
 Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 8/200 (4%)

Query: 103 KGKISPALLKLRGLRHLDLSKNDFGGSPVPEF-IGSLSKLRYLNLSCGTPSSKIPHPFRD 161
           KG  + + + L  L  LDLS+N               + L+YL+LS       +   F  
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFLG 394

Query: 162 LSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVL 221
           L   E+ + ++SNL  +        L +L +LD+S  +   + +   + + L SL+ L +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKM 452

Query: 222 RSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG 281
                       I  F    ++  LDLS   L    + P  FN   ++  L++  N L+ 
Sbjct: 453 AGNSFQENFLPDI--FTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 282 SIPEAFQHMVSLRLLSLASN 301
                F  + SL+ + L +N
Sbjct: 509 VPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 3e-10
 Identities = 43/196 (21%), Positives = 65/196 (33%), Gaps = 34/196 (17%)

Query: 632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ-EKSSNPI 690
           +   L L  N       +       +QVLDLS   I       + + S +     + NPI
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 691 IGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEIT 750
             LA            F  L ++                  + L      L       I 
Sbjct: 89  QSLALGA---------FSGLSSL------------------QKLVAVETNLASLENFPIG 121

Query: 751 DLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSV---- 805
            L  L  LN++ N +     P+    L +L+ LDLS N       + L +L  + +    
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 806 LDLSYNSLSGKIPLGT 821
           LDLS N ++  I  G 
Sbjct: 182 LDLSLNPMN-FIQPGA 196

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 728 LGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRN 787
              ++ LDLS  ++          L  L+ L L+ N +  L       L SL  L     
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 788 HFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQS 825
           + +      +  L  L  L++++N +     L     +
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSN 147

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  158 bits (401), Expect = 4e-41
 Identities = 102/581 (17%), Positives = 180/581 (30%), Gaps = 86/581 (14%)

Query: 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN 301
           +    D        +S+ P    L+  +  LDL FN +        +   +L++L L S+
Sbjct: 6   ASGVCDGRSRSF--TSI-PS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 302 ELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPI 361
            +       F ++ SL  L L  N LS   S     LSS      L+ L L  N     +
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS------LKYLNLMGNPYQT-L 113

Query: 362 PDLGRFL---SLKVLKLGENHLNGTINK-SLSHLFKLETLSLDGNSFTGVISETFFSNMS 417
                F    +L+ L++G       I +   + L  L  L +   S           ++ 
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-YQSQSLKSIR 172

Query: 418 NLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISL-DISNIG 476
           ++  L L  +     L         +++L L    +     + L        +  ++  G
Sbjct: 173 DIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 477 ISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSN 536
              T   +   L +  + L LS         D ++    D                   +
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFD----DCTLNGLGDF--------------NPSES 274

Query: 537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNG 596
                L K          +   ++  L++        +      L  ++ +++ N+++  
Sbjct: 275 DVVSELGK----------VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 597 ELPSSLKNCSKLRVLDLRKNAL--FGEVPTCVGGSLQNLIILRLKSNNFH--GNIPFQLC 652
              S  ++   L  LDL +N +       +   G+  +L  L L  N+          L 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 653 HLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDN 712
            L  +  LD+S N        C     M     SS  I  +   I               
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-------------- 430

Query: 713 VLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPK 772
                             ++ LD+S+N L ++       L  L  L +SRN L  L  P 
Sbjct: 431 ----------------QTLEVLDVSNNNL-DSFS---LFLPRLQELYISRNKLKTL--PD 468

Query: 773 IGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813
                 L  + +SRN            L+ L  + L  N  
Sbjct: 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (387), Expect = 3e-39
 Identities = 87/518 (16%), Positives = 182/518 (35%), Gaps = 55/518 (10%)

Query: 116 LRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL 175
           ++ LDLS N          + + + L+ L L     ++     F  L   E+ ++ +++L
Sbjct: 28  MKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 176 FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIW 235
            S+ S      LSSL++L+L             +   L +L+TL + +      +     
Sbjct: 87  SSL-SSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVET--FSEIRRI 142

Query: 236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRL 295
            F   TS+  L++    L   +         R+I HL L  +     +      + S+R 
Sbjct: 143 DFAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRN--------------KLSGQLSELIQNLSSG 341
           L L    L              + +                   KL   + EL +     
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260

Query: 342 CTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG 401
           CT+N L       +D+   +  +   ++++ L + + +L   ++   S L K++ ++++ 
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKV-ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 402 NSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQ---LKWLSLASCKMGPHFP 458
           +    ++  +F  ++ +L+ L L++N +  +   +         L+ L L+         
Sbjct: 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS--------- 369

Query: 459 NWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIV 518
                QN L S+            +    L   L  L++S N            +     
Sbjct: 370 -----QNHLRSMQ--------KTGEILLTLK-NLTSLDISRNTFHPMPDSCQWPEKM-RF 414

Query: 519 IDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSM 578
           +++SS         +P     L++S N         L    L  L ++ N+    +PD+ 
Sbjct: 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPDA- 469

Query: 579 GFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
                +  + +  N+L           + L+ + L  N
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 2e-35
 Identities = 89/444 (20%), Positives = 162/444 (36%), Gaps = 35/444 (7%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
            L+ ++++LDLS N +  + +         N+  L L  + +     +AF  + SL  L 
Sbjct: 23  GLTAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLSG-QLSELIQNLSSGCTVNSLEGLCLYAND 356
           L+ N L      +FG + SL  L L  N      ++ L  NL+      +L+ L +   +
Sbjct: 81  LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT------NLQTLRIGNVE 134

Query: 357 ITGPIP--DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFS 414
               I   D     SL  L++    L    ++SL  +  +  L+L  +     + E F  
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFAD 193

Query: 415 NMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISN 474
            +S+++ L L D +L             L    ++S      F   + T      L    
Sbjct: 194 ILSSVRYLELRDTNLA------RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 475 IGISDTIPDWFWDLSIE-LFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL 533
             I +     F D ++  L   N S + +  +L  +  +      + I        +  +
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR--RLHIPQFYLFYDLSTV 305

Query: 534 PSNST---FLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGF---LHNIQT 586
            S       + +  +K   +P     +  SL  L+L+ N    +   +        ++QT
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365

Query: 587 LSLRNNRLN--GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
           L L  N L    +    L     L  LD+ +N       +C     + +  L L S    
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW--PEKMRFLNLSSTGIR 423

Query: 645 GNIPFQLCHLAFIQVLDLSLNNIS 668
                + C    ++VLD+S NN+ 
Sbjct: 424 V---VKTCIPQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  109 bits (273), Expect = 8e-25
 Identities = 68/458 (14%), Positives = 145/458 (31%), Gaps = 73/458 (15%)

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
           ++K L L  N +    +  L     L+ L L  +     I    F ++ +L+ L L+DN 
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH 85

Query: 429 LTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL 488
           L+  LS                        +W    + L  L++             +  
Sbjct: 86  LS-SLS-----------------------SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 489 SIELFFLNLSNNHISGKLPDLSVLKSDDI-VIDISSNNF----DGPIPPLPSNSTFLNLS 543
              L  L + N     ++  +       +  ++I + +        +  +  +   L L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR-DIHHLTLH 180

Query: 544 KNKFSGLPDCWLN-FNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSL 602
            ++ + L + + +  +S+  L L +   +      +        +     R +     S 
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 603 KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDL 662
               KL    L  + +          +L  L       ++    +         I+ L +
Sbjct: 241 NELLKLLRYILELSEV-----EFDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHI 293

Query: 663 SLNNISGKIPKCFSNFSMMIQEK-SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSE 721
               +   +   +S    + +    ++ +  +              ++L ++        
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF---------SQHLKSL-------- 336

Query: 722 HEYKSTLGFVKYLDLSSNKLCEAIPEE---ITDLVGLTALNLSRNNLTGL--IPPKIGQL 776
                     ++LDLS N + E   +          L  L LS+N+L  +      +  L
Sbjct: 337 ----------EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 777 KSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           K+L  LD+SRN F   +P S      +  L+LS   + 
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  103 bits (259), Expect = 4e-23
 Identities = 59/381 (15%), Positives = 124/381 (32%), Gaps = 32/381 (8%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
               L  L  L++           + + S+  + +L L     +  +      LS   Y 
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 169 NVENSNL-------FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVL 221
            + ++NL         V  +       + R   L+  +  +     + + +L  ++    
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 222 RSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPS---SSVYPWLFNLSRNILHLDLGFNH 278
               L   NPS   + +    +ET+ +   H+P          +++L   +  + +  + 
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 279 LQGSIPEAFQHMVSLRLLSLASNELEGGIPK---FFGNMCSLNQLYLPRNKLS--GQLSE 333
           +        QH+ SL  L L+ N +     K     G   SL  L L +N L    +  E
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381

Query: 334 LIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFK 393
           ++  L       +L  L +  N              ++ L L    +   +   +     
Sbjct: 382 ILLTLK------NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQT 432

Query: 394 LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKM 453
           LE L +  N+       +F   +  LQ L+++ N L   L    +    L  + ++  ++
Sbjct: 433 LEVLDVSNNNLD-----SFSLFLPRLQELYISRNKLK-TLPDASLFP-VLLVMKISRNQL 485

Query: 454 GPHFPNWLQTQNQLISLDISN 474
                        L  + +  
Sbjct: 486 KSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.1 bits (216), Expect = 7e-18
 Identities = 56/330 (16%), Positives = 98/330 (29%), Gaps = 54/330 (16%)

Query: 518 VIDISSNNFDGPIPP-LPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIP 575
           V D  S +F   IP  L +    L+LS NK + +    L    +L +L L ++R +    
Sbjct: 9   VCDGRSRSFTS-IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 576 DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII 635
           D+   L +++ L L +N L+    S     S L+ L+L  N       T +  +L NL  
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 636 LRLKSNNFHGNIPFQ-LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLA 694
           LR+ +      I       L  +  L++   ++     +   +   +             
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI------------- 174

Query: 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG 754
                                                 +L L  ++    +      L  
Sbjct: 175 -------------------------------------HHLTLHLSESAFLLEIFADILSS 197

Query: 755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           +  L L   NL       +   +    +       S     S + L  L    L  + + 
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 815 GKIPLGTQLQSFNASVYAGNLELCGLPLPN 844
                   L  FN S      EL  +    
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVT 287

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 76.3 bits (188), Expect = 2e-14
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 56/259 (21%)

Query: 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
           +  + +  +  F+  IP   G    +++L L  N++       L+ C+ L+VL L+ + +
Sbjct: 6   ASGVCDGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 619 FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG-KIPKCFSN 677
              +      SL +L  L L  N+           L+ ++ L+L  N      +   F N
Sbjct: 63  -NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 678 FSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLS 737
                                                             L  ++ L + 
Sbjct: 122 --------------------------------------------------LTNLQTLRIG 131

Query: 738 SNKLCEAIPEE-ITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSS 796
           + +    I       L  L  L +   +L       +  ++ +  L L  +  +  +   
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

Query: 797 LSLLSGLSVLDLSYNSLSG 815
             +LS +  L+L   +L+ 
Sbjct: 192 ADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 39/214 (18%), Positives = 67/214 (31%), Gaps = 34/214 (15%)

Query: 604 NCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLS 663
           +C    V D R  +    +P+   G    +  L L  N         L   A +QVL L 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPS---GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 664 LNNISGKIPKCFSNFSMMIQ-EKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEH 722
            + I+      F +   +   + S N +  L++          +F  L +          
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS---------WFGPLSS---------- 99

Query: 723 EYKSTLGFVKYLDLSSNKLCE-AIPEEITDLVGLTALNLSRNNLTGLIPPK-IGQLKSLD 780
                   +KYL+L  N      +     +L  L  L +        I       L SL+
Sbjct: 100 --------LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 781 FLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
            L++           SL  +  +  L L  +  +
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  136 bits (345), Expect = 3e-34
 Identities = 97/511 (18%), Positives = 182/511 (35%), Gaps = 77/511 (15%)

Query: 177 SVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWL 236
            +  +   + L+      L   N+T +       + L  + TL      +  I+     +
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSIDG----V 64

Query: 237 FNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL 296
             L  ++  ++ S+N L   +    L  L      + +  N +    P    ++ +L  L
Sbjct: 65  EYL-NNLTQINFSNNQLTDITPLKNLTKLV----DILMNNNQIADITP--LANLTNLTGL 117

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG--------QLSEL-----IQNLSSGCT 343
           +L +N++    P    N+ +LN+L L  N +S          L +L     + +L     
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 175

Query: 344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNS 403
           + +LE L + +N ++  I  L +  +L+ L    N ++      L  L  L+ LSL+GN 
Sbjct: 176 LTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232

Query: 404 FTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQT 463
              + +    ++++NL  L LA+N ++                         +    L  
Sbjct: 233 LKDIGT---LASLTNLTDLDLANNQIS-------------------------NLAP-LSG 263

Query: 464 QNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISS 523
             +L  L +    IS+  P     L+  L  L L+ N +   +  +S LK+    + +  
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLT-ALTNLELNENQLED-ISPISNLKNLTY-LTLYF 318

Query: 524 NNFDGPIPPLPSNS--TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFL 581
           NN    I P+ S +    L    NK S +     N  +++ L+  +N+ S   P  +  L
Sbjct: 319 NNISD-ISPVSSLTKLQRLFFYNNKVSDVSSLA-NLTNINWLSAGHNQISDLTP--LANL 374

Query: 582 HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
             I  L L +        +   N S    +     AL        GGS     I    + 
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDI----TW 430

Query: 642 NFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672
           N            +    +       SG + 
Sbjct: 431 NLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (331), Expect = 2e-32
 Identities = 102/572 (17%), Positives = 187/572 (32%), Gaps = 134/572 (23%)

Query: 236 LFNLS--TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSL 293
           +F  +         L   ++  +     L  ++     L      +     +  +++ +L
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVT----TLQADRLGI--KSIDGVEYLNNL 70

Query: 294 RLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLY 353
             ++ ++N+L    P    N+  L  + +  N+++      I  L++   + +L GL L+
Sbjct: 71  TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-----ITPLAN---LTNLTGLTLF 120

Query: 354 ANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFF 413
            N IT  I  L    +L  L+L  N ++      LS L  L+ LS  GN  T +      
Sbjct: 121 NNQITD-IDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSF-GNQVTDLKP---L 173

Query: 414 SNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDIS 473
           +N++ L+ L ++ N ++                            + L     L SL  +
Sbjct: 174 ANLTTLERLDISSNKVS--------------------------DISVLAKLTNLESLIAT 207

Query: 474 NIGISDTIPDWFWDLSIELFFLNLSNNHIS-----GKLPDLSVLKSDDIVIDISSNNFDG 528
           N  ISD  P     L+  L  L+L+ N +        L +L+ L       D+++N    
Sbjct: 208 NNQISDITP--LGILT-NLDELSLNGNQLKDIGTLASLTNLTDL-------DLANNQISN 257

Query: 529 PIPPLPSNS--TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT 586
            + PL   +  T L L  N+ S +        +L+ L L  N+     P  +  L N+  
Sbjct: 258 -LAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313

Query: 587 LSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN 646
           L+L  N ++    S + + +KL+ L    N +          +L N+  L    N     
Sbjct: 314 LTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSDVSSL---ANLTNINWLSAGHNQISDL 368

Query: 647 IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYY 706
            P    +L  I  L L+    +       +N                             
Sbjct: 369 TPLA--NLTRITQLGLNDQAWTNAPVNYKAN----------------------------- 397

Query: 707 FRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAI-PEEITDLVGLTALNLSRNNL 765
                                   V   +   N     I P  I+D    T  +++ N  
Sbjct: 398 ------------------------VSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433

Query: 766 TGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSL 797
           +               +      FSG +   L
Sbjct: 434 SYT-NEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (331), Expect = 2e-32
 Identities = 95/505 (18%), Positives = 180/505 (35%), Gaps = 66/505 (13%)

Query: 108 PALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEY 167
                L       L K +   +        L ++  L          I    + + G EY
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQAD----RLGI----KSIDGVEY 66

Query: 168 F-NVENSNLFS--VGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSC 224
             N+   N  +  +  +  L +L+ L  + ++   +   +     ++ L +L  L L + 
Sbjct: 67  LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNN 122

Query: 225 YLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIP 284
            +  I+P    L NL T++  L+LS N +   S    L  L+ ++  L  G         
Sbjct: 123 QITDIDP----LKNL-TNLNRLELSSNTI---SDISALSGLT-SLQQLSFGNQVTD---L 170

Query: 285 EAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTV 344
           +   ++ +L  L ++SN++          + +L  L    N++S      I  L     +
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD-----ITPLGI---L 220

Query: 345 NSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
            +L+ L L  N +   I  L    +L  L L  N ++      LS L KL  L L  N  
Sbjct: 221 TNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

Query: 405 TGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF----QLKWLSLASCKMGPHFPNW 460
           + +      + ++ L  L L +N L        +        L +L+L    +     + 
Sbjct: 278 SNISP---LAGLTALTNLELNENQLED------ISPISNLKNLTYLTLYFNNI--SDISP 326

Query: 461 LQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVID 520
           + +  +L  L   N  +SD       +L+  + +L+  +N IS  L  L+ L      + 
Sbjct: 327 VSSLTKLQRLFFYNNKVSD--VSSLANLT-NINWLSAGHNQISD-LTPLANLTRIT-QLG 381

Query: 521 ISSNNFDGPIPPLPSNSTFLNLSKNKFSGL--PDCWLNFNSLSILNLANNRFSGKIPDSM 578
           ++   +        +N +  N  KN    L  P    +  S +  ++  N  S    +  
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNEVS 440

Query: 579 GFLHNIQTLSLRNNRLNGELPSSLK 603
                  T+       +G +   LK
Sbjct: 441 YTFSQPVTIGKGTTTFSGTVTQPLK 465

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  126 bits (318), Expect = 7e-31
 Identities = 88/545 (16%), Positives = 170/545 (31%), Gaps = 137/545 (25%)

Query: 285 EAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTV 344
                +       L    +   +     ++  +  L   R  +     + ++ L++    
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNN---- 69

Query: 345 NSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
             L  +    N +T  I  L     L  + +  N +       L++L  L  L+L  N  
Sbjct: 70  --LTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124

Query: 405 TGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQ 464
           T +       N++NL  L L+ N+++                              L   
Sbjct: 125 TDIDP---LKNLTNLNRLELSSNTIS-------------------------DISA-LSGL 155

Query: 465 NQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSN 524
             L  L   N  ++D  P    +L+  L  L++S+N +S  +  L+ L            
Sbjct: 156 TSLQQLSFGN-QVTDLKP--LANLT-TLERLDISSNKVSD-ISVLAKLT----------- 199

Query: 525 NFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNI 584
                      N   L  + N+ S +        +L  L+L  N+       ++  L N+
Sbjct: 200 -----------NLESLIATNNQISDITPLG-ILTNLDELSLNGNQLKD--IGTLASLTNL 245

Query: 585 QTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
             L L NN+++    + L   +KL  L L  N +    P      L  L  L L  N   
Sbjct: 246 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLE 300

Query: 645 GNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYI 704
              P  + +L  +  L L  NNIS                     I  +++         
Sbjct: 301 DISP--ISNLKNLTYLTLYFNNISD--------------------ISPVSS--------- 329

Query: 705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNN 764
                                  L  ++ L   +NK+ +     + +L  +  L+   N 
Sbjct: 330 -----------------------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 765 LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPL--GTQ 822
           ++ L P  +  L  +  L L+   ++    +  + +S  + +     +L     +  G  
Sbjct: 365 ISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGS 422

Query: 823 LQSFN 827
               +
Sbjct: 423 YTEPD 427

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  124 bits (314), Expect = 3e-30
 Identities = 92/506 (18%), Positives = 161/506 (31%), Gaps = 111/506 (21%)

Query: 335 IQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKL 394
           I  + +   +       L   ++T  +        +  L+     +       + +L  L
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGI--KSIDGVEYLNNL 70

Query: 395 ETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG 454
             ++   N  T +       N++ L  + + +N +                         
Sbjct: 71  TQINFSNNQLTDITP---LKNLTKLVDILMNNNQIA------------------------ 103

Query: 455 PHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG--KLPDLSVL 512
                 L     L  L + N  I+D  P    +L+  L  L LS+N IS    L  L+ L
Sbjct: 104 -DITP-LANLTNLTGLTLFNNQITDIDP--LKNLT-NLNRLELSSNTISDISALSGLTSL 158

Query: 513 KSDDIVIDISSNNFDGPIP-PLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFS 571
           +          N      P    +    L++S NK S +        +L  L   NN+ S
Sbjct: 159 QQLSF-----GNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQIS 212

Query: 572 GKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQ 631
              P  +G L N+  LSL  N+L      +L + + L  LDL  N +    P      L 
Sbjct: 213 DITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPL---SGLT 265

Query: 632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPII 691
            L  L+L +N      P  L  L  +  L+L+ N +                      I 
Sbjct: 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLED--------------------IS 303

Query: 692 GLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITD 751
            ++N                                L  + YL L  N + +  P  ++ 
Sbjct: 304 PISN--------------------------------LKNLTYLTLYFNNISDISP--VSS 329

Query: 752 LVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN 811
           L  L  L    N ++ +    +  L ++++L    N  S   P  L+ L+ ++ L L+  
Sbjct: 330 LTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385

Query: 812 SLSGKIPLGTQLQSFNASVYAGNLEL 837
           + +          S   +V      L
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (258), Expect = 3e-23
 Identities = 66/314 (21%), Positives = 119/314 (37%), Gaps = 51/314 (16%)

Query: 520 DISSNNFDGPIPPLP--SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDS 577
            I+ +     I      +      L K   +       + + ++ L            D 
Sbjct: 7   TITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIK--SIDG 63

Query: 578 MGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILR 637
           + +L+N+  ++  NN+L     + LKN +KL  + +  N +    P     +L NL  L 
Sbjct: 64  VEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITPL---ANLTNLTGLT 118

Query: 638 LKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEI 697
           L +N      P +  +L  +  L+LS N IS       S  S +   +     +   N++
Sbjct: 119 LFNNQITDIDPLK--NLTNLNRLELSSNTISD-----ISALSGLTSLQQ----LSFGNQV 167

Query: 698 LVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTA 757
             +         L  +                  + LD+SSNK+  +    +  L  L +
Sbjct: 168 TDLKP----LANLTTL------------------ERLDISSNKV--SDISVLAKLTNLES 203

Query: 758 LNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKI 817
           L  + N ++ + P  +G L +LD L L+ N        +L+ L+ L+ LDL+ N +S   
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 259

Query: 818 PLG--TQLQSFNAS 829
           PL   T+L      
Sbjct: 260 PLSGLTKLTELKLG 273

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  131 bits (332), Expect = 1e-32
 Identities = 70/461 (15%), Positives = 140/461 (30%), Gaps = 48/461 (10%)

Query: 236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRL 295
           +       +   ++D+ L        L   + N+  LDL  N L             L L
Sbjct: 5   IKQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAN 355
           L+L+SN L   +     ++ +L  L L  N +  +L              S+E L    N
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP----------SIETLHAANN 109

Query: 356 DITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSN 415
           +I+  +    R    K + L  N +    +       +++ L L  N    V      ++
Sbjct: 110 NISR-VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 416 MSNLQMLFLADNSLT-------------LKLSH--------DWVPAFQLKWLSLASCKMG 454
              L+ L L  N +              L LS         ++  A  + W+SL + K+ 
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227

Query: 455 PHFPNWLQTQNQLISLDIS-NIGISDTIPDWFWDLSIELFFLNLSNNHISG----KLPDL 509
                 L+    L   D+  N     T+ D+F            +   ++G    +    
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 510 SVLKSDDIVIDISSNNFDGPIPPLPSNS-TFLNLSKNKFSGLPDCWLNFNSLSILNLANN 568
           ++        +     F   +  L       L+   ++   L     N      ++    
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 569 RFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG 628
           ++   I           TL  +   L+ ++ +  +  ++L     +              
Sbjct: 347 QYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ--IELQHATE 404

Query: 629 SLQNLIILRLKSNNF-HGNIPFQLCHLAFIQVLDLSLNNIS 668
               L +LR     +    +  Q      I+  D+  +  +
Sbjct: 405 EQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (322), Expect = 2e-31
 Identities = 72/566 (12%), Positives = 160/566 (28%), Gaps = 98/566 (17%)

Query: 282 SIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSG 341
           +I E  Q+    ++  +  + L+  +     +  ++ +L L  N LS   +  +   +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 342 CTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG 401
                LE L L +N +     DL    +L+ L L  N++     + L     +ETL    
Sbjct: 59  ----KLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 402 NSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWL 461
           N+ + V            + ++LA+N +T+    D     ++++L L             
Sbjct: 109 NNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL----------- 153

Query: 462 QTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDI 521
              N++ +++                 S  L  LNL  N I   +    V          
Sbjct: 154 ---NEIDTVN----------FAELAASSDTLEHLNLQYNFIY-DVKGQVVF--------- 190

Query: 522 SSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFL 581
                        +    L+LS NK + +   + +   ++ ++L NN+    I  ++ F 
Sbjct: 191 -------------AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 582 HNIQTLSLRNNRLN-GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS 640
            N++   LR N  + G L        +++ +  +                          
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 641 NNFHGNIPFQLCHL--AFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEIL 698
            +       +L  L      +L    +       +  +       +        + +++ 
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV- 355

Query: 699 VVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTAL 758
                          +                   L+     L E +         L   
Sbjct: 356 --------TLRKQAKI------------------TLEQKKKALDEQVSNGRRAHAELDGT 389

Query: 759 NLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL----S 814
                    L      Q        + + +    +       + +   D+  +       
Sbjct: 390 LQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

Query: 815 GKIPLGTQLQSFNASVYAGNLELCGL 840
               L       + ++ + N  L  L
Sbjct: 450 ENARLKKLNGEADLALASANATLQEL 475

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 7e-28
 Identities = 65/441 (14%), Positives = 143/441 (32%), Gaps = 39/441 (8%)

Query: 131 VPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSL 190
           + E   + ++ +   ++  +    +    +     +  ++  + L  + + + L+  + L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKL 60

Query: 191 RHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSD 250
             L+LS   L ++ D    +  L +L+TL L + Y+  +            SIETL  ++
Sbjct: 61  ELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLV--------GPSIETLHAAN 108

Query: 251 NHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEG-GIPK 309
           N++   S      +  +   ++ L  N +             ++ L L  NE++     +
Sbjct: 109 NNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 310 FFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLS 369
              +  +L  L L  N +         ++        L+ L L +N +    P+      
Sbjct: 164 LAASSDTLEHLNLQYNFIY--------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215

Query: 370 LKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSL 429
           +  + L  N L   I K+L     LE   L GN F       FFS    +Q +       
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 430 TLKLSHDWVPAFQLKWLSLASCKMGP-----HFPNWLQTQNQLISLDISNIGISDTIPDW 484
               + +      L       C+  P           + ++ L+S   S     + +   
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET---ERLECE 331

Query: 485 FWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSK 544
             + +     ++         +  +++ K   I ++      D  +           L  
Sbjct: 332 RENQA-RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA--ELDG 388

Query: 545 NKFSGLPDCWLNFNSLSILNL 565
                +    L   +     L
Sbjct: 389 TLQQAVGQIELQHATEEQSPL 409

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 57/344 (16%), Positives = 106/344 (30%), Gaps = 45/344 (13%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
            L     L  L+LS N    +     + SLS LR L+L+    ++ +          E  
Sbjct: 53  DLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLN----NNYVQE-LLVGPSIETL 104

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPP 228
           +  N+N+  V      S     +++ L+   +T   D          ++ L L+   +  
Sbjct: 105 HAANNNISRV----SCSRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDT 158

Query: 229 INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQ 288
           +N +   L   S ++E L+L  N +    V   +      +  LDL  N L   +   FQ
Sbjct: 159 VNFA--ELAASSDTLEHLNLQYNFI--YDVKGQVVF--AKLKTLDLSSNKLA-FMGPEFQ 211

Query: 289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG-----------QLSELIQN 337
               +  +SL +N+L   I K      +L    L  N               ++  + + 
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 338 LSSGCTVNSLEGLC---------LYANDITGPIPDLGRFLSLKVLKLGENHLN--GTINK 386
                T  + E                D+  P  D    L  K   L     +    +  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 387 SLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
              +  +   +      +   + +           L     +L 
Sbjct: 331 ERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 39/296 (13%), Positives = 78/296 (26%), Gaps = 40/296 (13%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
                  +++LDL  N+       E   S   L +LNL                      
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ--------------------- 177

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPP 228
                N      ++     + L+ LDLS   L      F        +  + LR+  L  
Sbjct: 178 ----YNFIY--DVKGQVVFAKLKTLDLSSNKLAFMGPEF---QSAAGVTWISLRNNKLVL 228

Query: 229 INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQ 288
           I  +  +  NL    E  DL  N     ++  +     R      +    ++    +  +
Sbjct: 229 IEKALRFSQNL----EHFDLRGNGFHCGTLRDFFSKNQRV---QTVAKQTVKKLTGQNEE 281

Query: 289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLE 348
                 L    +   E     F   + +L +         G  +E ++            
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQ--ARQR 339

Query: 349 GLCLYANDITGPIPDLGRFL-SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNS 403
            +          I  +     +   L+  +  L+  ++       +L+        
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 19/202 (9%), Positives = 48/202 (23%), Gaps = 17/202 (8%)

Query: 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLS-----CGTPSSKIPHPF 159
            + P      G+  + L  N      + + +     L + +L      CGT        F
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTL----RDFF 258

Query: 160 RDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTL 219
                 +    +     +  + E  +  +   +    C +L        +  +      L
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318

Query: 220 VLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHL 279
             +      +                +D         +V   +    +  + L+     L
Sbjct: 319 SGQGSETERLECERENQARQ----REIDALKEQY--RTVIDQVTLRKQAKITLEQKKKAL 372

Query: 280 QGSIPEAFQHMVSLRLLSLASN 301
              +    +    L      + 
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAV 394

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (322), Expect = 3e-32
 Identities = 80/410 (19%), Positives = 145/410 (35%), Gaps = 73/410 (17%)

Query: 216 LKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLG 275
             TL      +  I P      +L        L    +        L     +I  L + 
Sbjct: 2   AATLATLPAPINQIFP----DADL-AEGIRAVLQKASVTDVVTQEEL----ESITKLVVA 52

Query: 276 FNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELI 335
              +     +  +++ +L  L+L  N++    P    N+  L  LY+  NK++       
Sbjct: 53  GEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT------- 101

Query: 336 QNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLE 395
            ++S+   + +L  L L  ++I+  I  L     +  L LG NH    +   LS++  L 
Sbjct: 102 -DISALQNLTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLN 158

Query: 396 TLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGP 455
            L++  +    V      +N+++L  L L  N +   +S                     
Sbjct: 159 YLTVTESKVKDVTP---IANLTDLYSLSLNYNQIE-DISP-------------------- 194

Query: 456 HFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS-----GKLPDLS 510
                L +   L         I+D  P    +++  L  L + NN I+       L  L+
Sbjct: 195 -----LASLTSLHYFTAYVNQITDITP--VANMT-RLNSLKIGNNKITDLSPLANLSQLT 246

Query: 511 VLKSDDIVIDISSNNFDGPIPPLPSNS--TFLNLSKNKFSGLPDCWLNFNSLSILNLANN 568
            L       +I +N     I  +   +    LN+  N+ S +     N + L+ L L NN
Sbjct: 247 WL-------EIGTNQISD-INAVKDLTKLKMLNVGSNQISDISVLN-NLSQLNSLFLNNN 297

Query: 569 RFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
           +   +  + +G L N+ TL L  N +       L + SK+   D     +
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (319), Expect = 8e-32
 Identities = 80/393 (20%), Positives = 153/393 (38%), Gaps = 51/393 (12%)

Query: 115 GLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSN 174
           G   L                  L++     L      + +     +L       V    
Sbjct: 1   GAATLATLPAPINQI---FPDADLAEGIRAVLQ-KASVTDVV-TQEELESITKLVVAGEK 55

Query: 175 LFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFI 234
           +    S++ + +L++L +L+L+   +T  S     +S L  L  L + +  +  I+    
Sbjct: 56  V---ASIQGIEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITDISA--- 105

Query: 235 WLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLR 294
            L NL T++  L L+++++   S    L NL+  +  L+LG NH   S      +M  L 
Sbjct: 106 -LQNL-TNLRELYLNEDNISDISP---LANLT-KMYSLNLGANHNL-SDLSPLSNMTGLN 158

Query: 295 LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYA 354
            L++  ++++   P    N+  L  L L  N++       + +L+      SL     Y 
Sbjct: 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLT------SLHYFTAYV 208

Query: 355 NDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFS 414
           N IT  I  +     L  LK+G N +       L++L +L  L +  N  + + +     
Sbjct: 209 NQITD-ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA---VK 262

Query: 415 NMSNLQMLFLADNSLTLKLSHDWVPAF----QLKWLSLASCKMGPHFPNWLQTQNQLISL 470
           +++ L+ML +  N ++       +       QL  L L + ++G      +     L +L
Sbjct: 263 DLTKLKMLNVGSNQIS------DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 471 DISNIGISDTIPDWFWDLSIELFFLNLSNNHIS 503
            +S   I+D  P     LS ++   + +N  I 
Sbjct: 317 FLSQNHITDIRP--LASLS-KMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (307), Expect = 3e-30
 Identities = 81/426 (19%), Positives = 152/426 (35%), Gaps = 85/426 (19%)

Query: 245 TLDLSDNHLPSSSVYPWLFNLS--RNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNE 302
           TL      +        +F  +     +   L    +   +    + + S+  L +A  +
Sbjct: 4   TLATLPAPINQ------IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEK 55

Query: 303 LEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIP 362
           +     +    + +L  L L  N+++      I  LS+   +  L  L +  N IT  I 
Sbjct: 56  VAS--IQGIEYLTNLEYLNLNGNQITD-----ISPLSN---LVKLTNLYIGTNKITD-IS 104

Query: 363 DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQML 422
            L    +L+ L L E++++      L++L K+ +L+L  N     +S    SNM+ L  L
Sbjct: 105 ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYL 160

Query: 423 FLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIP 482
            + ++ +                               +     L SL ++   I D  P
Sbjct: 161 TVTESKVK-------------------------DVTP-IANLTDLYSLSLNYNQIEDISP 194

Query: 483 DWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNL 542
                L+  L +     N I+  +  ++ +                           L +
Sbjct: 195 --LASLT-SLHYFTAYVNQITD-ITPVANMT----------------------RLNSLKI 228

Query: 543 SKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSL 602
             NK + L     N + L+ L +  N+ S    +++  L  ++ L++ +N+++    S L
Sbjct: 229 GNNKITDLSP-LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVL 283

Query: 603 KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDL 662
            N S+L  L L  N L  E    +GG L NL  L L  N+     P     L+ +   D 
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDIRPLA--SLSKMDSADF 340

Query: 663 SLNNIS 668
           +   I 
Sbjct: 341 ANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  115 bits (290), Expect = 6e-28
 Identities = 65/377 (17%), Positives = 141/377 (37%), Gaps = 51/377 (13%)

Query: 467 LISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP--DLSVLKSDDIVIDISSN 524
             +L      I+   PD       E     L    ++  +   +L  +      + ++  
Sbjct: 2   AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVVTQEELESITK----LVVAGE 54

Query: 525 NFDGPIPPL--PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLH 582
                I  +   +N  +LNL+ N+ + +     N   L+ L +  N+ +     ++  L 
Sbjct: 55  KVAS-IQGIEYLTNLEYLNLNGNQITDISPL-SNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 583 NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNN 642
           N++ L L  + ++    S L N +K+  L+L  N    ++      ++  L  L +  + 
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESK 166

Query: 643 FHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMI-------QEKSSNPIIGLAN 695
                P    +L  +  L L+ N I    P   ++ + +        Q     P+  +  
Sbjct: 167 VKDVTPIA--NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTR 222

Query: 696 -EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG 754
              L           + N  +T    +    + L  + +L++ +N++ +     + DL  
Sbjct: 223 LNSL----------KIGNNKIT----DLSPLANLSQLTWLEIGTNQISD--INAVKDLTK 266

Query: 755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           L  LN+  N ++ +    +  L  L+ L L+ N         +  L+ L+ L LS N ++
Sbjct: 267 LKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 815 GKIPLG--TQLQSFNAS 829
              PL   +++ S + +
Sbjct: 325 DIRPLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  113 bits (286), Expect = 2e-27
 Identities = 68/368 (18%), Positives = 137/368 (37%), Gaps = 53/368 (14%)

Query: 317 LNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLG 376
              L              I  +     +       L    +T  +       S+  L + 
Sbjct: 2   AATLATLPAP--------INQIFPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVA 52

Query: 377 ENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHD 436
              +     + + +L  LE L+L+GN  T +      SN+  L  L++  N +T      
Sbjct: 53  GEKVASI--QGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD----- 102

Query: 437 WVPAF----QLKWLSLASCKMGPHFPNWLQTQNQLISLDIS-NIGISDTIPDWFWDLSIE 491
            + A      L+ L L    +       L    ++ SL++  N  +SD       +++  
Sbjct: 103 -ISALQNLTNLRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSD--LSPLSNMT-G 156

Query: 492 LFFLNLSNNHIS-----GKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNS--TFLNLSK 544
           L +L ++ + +        L DL  L        ++ N  +  I PL S +   +     
Sbjct: 157 LNYLTVTESKVKDVTPIANLTDLYSL-------SLNYNQIED-ISPLASLTSLHYFTAYV 208

Query: 545 NKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKN 604
           N+ + +     N   L+ L + NN+ +   P  +  L  +  L +  N+++    +++K+
Sbjct: 209 NQITDITPVA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKD 263

Query: 605 CSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSL 664
            +KL++L++  N +  ++      +L  L  L L +N         +  L  +  L LS 
Sbjct: 264 LTKLKMLNVGSNQI-SDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 665 NNISGKIP 672
           N+I+   P
Sbjct: 321 NHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (273), Expect = 8e-26
 Identities = 80/468 (17%), Positives = 146/468 (31%), Gaps = 123/468 (26%)

Query: 347 LEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG 406
              L      I   I             L +  +   +      L  +  L + G     
Sbjct: 2   AATLATLPAPINQ-IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 407 VISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQ 466
           +        ++NL+ L L  N +T  +S             L++               +
Sbjct: 59  I---QGIEYLTNLEYLNLNGNQIT-DIS------------PLSNLV-------------K 89

Query: 467 LISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNF 526
           L +L I    I+D       +L+  L  L L+ ++IS  +  L+ L              
Sbjct: 90  LTNLYIGTNKITD--ISALQNLT-NLRELYLNEDNISD-ISPLANLT------------- 132

Query: 527 DGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT 586
                        LNL  N          N   L+ L +  ++     P  +  L ++ +
Sbjct: 133 ---------KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 587 LSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN 646
           LSL  N++     S L + + L       N +    P     ++  L  L++ +N     
Sbjct: 182 LSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITPV---ANMTRLNSLKIGNNKITDL 236

Query: 647 IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYY 706
            P  L +L+ +  L++                        +N I  +             
Sbjct: 237 SP--LANLSQLTWLEI-----------------------GTNQISDINA----------- 260

Query: 707 FRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLT 766
            + L  +                  K L++ SN++ +     + +L  L +L L+ N L 
Sbjct: 261 VKDLTKL------------------KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLG 300

Query: 767 GLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
                 IG L +L  L LS+NH +   P  L+ LS +   D +   + 
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (267), Expect = 5e-25
 Identities = 60/323 (18%), Positives = 114/323 (35%), Gaps = 58/323 (17%)

Query: 108 PALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEY 167
             L  L  L +L +  N          + +L+ LR L L+                    
Sbjct: 82  SPLSNLVKLTNLYIGTNKI---TDISALQNLTNLRELYLN-------------------- 118

Query: 168 FNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLP 227
                 +  S   +  L++L+ +  L+L   +           S +  L  L +    + 
Sbjct: 119 -----EDNIS--DISPLANLTKMYSLNLGANHNLSDLSPL---SNMTGLNYLTVTESKVK 168

Query: 228 PINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAF 287
            + P    + NL T + +L L+ N +   S    L +L+ ++ +     N +    P   
Sbjct: 169 DVTP----IANL-TDLYSLSLNYNQIEDISP---LASLT-SLHYFTAYVNQITDITP--V 217

Query: 288 QHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347
            +M  L  L + +N++    P    N+  L  L +  N++S  ++ +            L
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDL-------TKL 267

Query: 348 EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGV 407
           + L + +N I+  I  L     L  L L  N L     + +  L  L TL L  N  T +
Sbjct: 268 KMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326

Query: 408 ISETFFSNMSNLQMLFLADNSLT 430
                 +++S +     A+  + 
Sbjct: 327 RP---LASLSKMDSADFANQVIK 346

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (306), Expect = 3e-30
 Identities = 55/361 (15%), Positives = 111/361 (30%), Gaps = 73/361 (20%)

Query: 467 LISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNF 526
             +L            D         +  + +  H + +  + +  +     I+  +   
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQ-RHYNADRNRWHSAWRQANSNNPQ-----IETRTGRA 67

Query: 527 DGPIPPLPSNST-----FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFL 581
                 L  ++T      L L        PD     + L  + +       ++PD+M   
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 582 HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVG--------GSLQNL 633
             ++TL+L  N L   LP+S+ + ++LR L +R      E+P  +           L NL
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693
             LRL+      ++P  + +L  ++ L +  + +S  +     +   +            
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL------------ 231

Query: 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLV 753
                                                 + LDL         P       
Sbjct: 232 --------------------------------------EELDLRGCTALRNYPPIFGGRA 253

Query: 754 GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813
            L  L L   +    +P  I +L  L+ LDL        +PS ++ L    ++ +  +  
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

Query: 814 S 814
           +
Sbjct: 314 A 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  107 bits (269), Expect = 2e-25
 Identities = 48/308 (15%), Positives = 88/308 (28%), Gaps = 36/308 (11%)

Query: 518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSG--KIP 575
            +    +     + P     +      N             + +   +            
Sbjct: 16  NLYFQGST---ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 576 DSMGFLH--NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633
           D +          L LR+  L  + P      S L+ + +    L  E+P  +      L
Sbjct: 73  DLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQ-QFAGL 129

Query: 634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693
             L L  N     +P  +  L  ++ L +       ++P+  ++     + +    +  L
Sbjct: 130 ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 694 A---NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEIT 750
                 I  +P  I   + L                     K L + ++ L  A+   I 
Sbjct: 189 RLEWTGIRSLPASIANLQNL---------------------KSLKIRNSPL-SALGPAIH 226

Query: 751 DLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY 810
            L  L  L+L         PP  G    L  L L        +P  +  L+ L  LDL  
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 811 NSLSGKIP 818
                ++P
Sbjct: 287 CVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (260), Expect = 3e-24
 Identities = 49/330 (14%), Positives = 105/330 (31%), Gaps = 24/330 (7%)

Query: 346 SLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
             E L    +    P  D L ++           H         ++    +  +  G + 
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW----RQANSNNPQIETRTGRAL 68

Query: 405 TGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQ 464
                    +       L L    L  +          L+ +++ +  +    P+ +Q  
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQF 126

Query: 465 NQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSN 524
             L +L ++   +   +P     L+  L  L++       +LP+            ++S 
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLN-RLRELSIRACPELTELPE-----------PLAST 173

Query: 525 NFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNI 584
           +  G    L  N   L L       LP    N  +L  L + N+  S  +  ++  L  +
Sbjct: 174 DASGEHQGL-VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 585 QTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
           + L LR        P      + L+ L L+  +    +P  +   L  L  L L+     
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNL 290

Query: 645 GNIPFQLCHLAFIQVLDLSLNNISGKIPKC 674
             +P  +  L    ++ +   ++  ++ + 
Sbjct: 291 SRLPSLIAQLPANCIILVP-PHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (252), Expect = 3e-23
 Identities = 58/380 (15%), Positives = 99/380 (26%), Gaps = 76/380 (20%)

Query: 281 GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSS 340
           GS      H      L    +     +  +   +    + Y                   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGST---ALRPYHDVLSQWQRHYNADRNRWHSAWRQAN---- 54

Query: 341 GCTVNSLEGLCLYANDITGPIPDLGR--FLSLKVLKLGENHLNGTINKSLSHLFKLETLS 398
               N+ +        +      L          L+L    L          L  L+ ++
Sbjct: 55  ---SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMT 110

Query: 399 LDGNSFTGVISETFFSNMSNLQMLFLADNSLTL------KLSHDWVPAFQLKWLSLASCK 452
           +D      +         + L+ L LA N L         L+       +L+ LS+ +C 
Sbjct: 111 IDAAGLMELPDT--MQQFAGLETLTLARNPLRALPASIASLN-------RLRELSIRAC- 160

Query: 453 MGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPD---- 508
                        +L  L    +  S         L   L  L L    I   LP     
Sbjct: 161 ------------PELTELP-EPLA-STDASGEHQGLV-NLQSLRLEWTGIR-SLPASIAN 204

Query: 509 LSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANN 568
           L  LKS                         L +  +  S L     +   L  L+L   
Sbjct: 205 LQNLKS-------------------------LKIRNSPLSALGPAIHHLPKLEELDLRGC 239

Query: 569 RFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG 628
                 P   G    ++ L L++      LP  +   ++L  LDLR       +P+ +  
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-A 298

Query: 629 SLQNLIILRLKSNNFHGNIP 648
            L    I+ +   +    + 
Sbjct: 299 QLPANCIILV-PPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.3 bits (243), Expect = 5e-22
 Identities = 56/320 (17%), Positives = 110/320 (34%), Gaps = 46/320 (14%)

Query: 382 GTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF 441
           G+ +    H    E L   G++        +   +S  Q  + AD +             
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTAL----RPYHDVLSQWQRHYNADRNRWHSAWR--QANS 55

Query: 442 QLKWLSLASCKMGPHFPNWLQ--TQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSN 499
               +   + +      + L+  TQ   ++L++ ++ +    PD  + LS  L  + +  
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDA 113

Query: 500 NHIS------GKLPDLSVLKSDDIVIDISSNNFDGPIPPLPS------NSTFLNLSK-NK 546
             +        +   L  L        ++ N     +  LP+          L++    +
Sbjct: 114 AGLMELPDTMQQFAGLETL-------TLARNP----LRALPASIASLNRLRELSIRACPE 162

Query: 547 FSGLPD---------CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE 597
            + LP+               +L  L L        +P S+  L N+++L +RN+ L+  
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A 220

Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFI 657
           L  ++ +  KL  LDLR        P   G     L  L LK  +    +P  +  L  +
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQL 279

Query: 658 QVLDLSLNNISGKIPKCFSN 677
           + LDL       ++P   + 
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.3 bits (230), Expect = 2e-20
 Identities = 64/346 (18%), Positives = 110/346 (31%), Gaps = 43/346 (12%)

Query: 132 PEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLR 191
                  S    L     T                     N++     S  R ++ ++ +
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQ-----RHYNADRNRWHSAWRQANSNNPQ 59

Query: 192 HLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN 251
               +   L  ++D  +  +       L LRS  L                         
Sbjct: 60  IETRTGRALKATADLLE-DATQPGRVALELRSVPL------------------------P 94

Query: 252 HLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFF 311
             P        F LS ++ H+ +    L   +P+  Q    L  L+LA N L   +P   
Sbjct: 95  QFPDQ-----AFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI 146

Query: 312 GNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVN---SLEGLCLYANDITGPIPDLGRFL 368
            ++  L +L +       +L E + +  +        +L+ L L    I      +    
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ 206

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
           +LK LK+  + L+  +  ++ HL KLE L L G +         F   + L+ L L D S
Sbjct: 207 NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCS 264

Query: 429 LTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISN 474
             L L  D     QL+ L L  C      P+ +        + +  
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 6e-19
 Identities = 56/336 (16%), Positives = 107/336 (31%), Gaps = 40/336 (11%)

Query: 113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVEN 172
             G  +L    +     P  + +    +    + +    + +      + +  +      
Sbjct: 11  SSGRENLYFQGS-TALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTG 65

Query: 173 SNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPS 232
             L +   L   +       L+L  + L +  D      +L  L+ + + +  L  +  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPD---QAFRLSHLQHMTIDAAGLMELPDT 122

Query: 233 FIWLFNLSTSIETLDLSDN---HLPSSSVYPWLFNLSRNILHLDL-GFNHL--------Q 280
                 L    ETL L+ N    LP+S     + +L   +  L +     L         
Sbjct: 123 MQQFAGL----ETLTLARNPLRALPAS-----IASL-NRLRELSIRACPELTELPEPLAS 172

Query: 281 GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSS 340
                  Q +V+L+ L L    +   +P    N+ +L  L +  + LS  L   I +L  
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP- 229

Query: 341 GCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSL 399
                 LE L L         P   G    LK L L +     T+   +  L +LE L L
Sbjct: 230 -----KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 400 DGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSH 435
            G      +     + +    ++ +  +       H
Sbjct: 285 RGCVNLSRLPSL-IAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 3e-17
 Identities = 39/249 (15%), Positives = 80/249 (32%), Gaps = 30/249 (12%)

Query: 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSG 164
           +      +L  L+H+ +         +P+ +   + L  L L+   P   +P     L+ 
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLA-RNPLRALPASIASLNR 151

Query: 165 FEYFNVENSN--------LFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSL 216
               ++            L S  +      L +L+ L L    +          + L +L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI---ANLQNL 208

Query: 217 KTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN----HLPSSSVYPWLFNLSRNILHL 272
           K+L +R+  L  + P+   L  L    E LDL       + P           +  +  L
Sbjct: 209 KSLKIRNSPLSALGPAIHHLPKL----EELDLRGCTALRNYPPI-----FGGRA-PLKRL 258

Query: 273 DL-GFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
            L   ++L  ++P     +  L  L L        +P     + +   + +P +  +   
Sbjct: 259 ILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 332 SELIQNLSS 340
                   +
Sbjct: 318 QHRPVARPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.6 bits (197), Expect = 5e-16
 Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 25/245 (10%)

Query: 111 LKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNV 170
               G   L+L          P+    LS L+++ +       ++P   +  +G E   +
Sbjct: 78  ATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTL 134

Query: 171 ENSNLFSVGSL-ERLSHLSSLRHLDLS-CINLTK------SSDWFQVVSQLHSLKTLVLR 222
             + L    +L   ++ L+ LR L +  C  LT+      S+D       L +L++L L 
Sbjct: 135 ARNPL---RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 223 SCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDL-GFNHLQG 281
              +  +  S   L NL    ++L + ++ L  S++ P + +L   +  LDL G   L+ 
Sbjct: 192 WTGIRSLPASIANLQNL----KSLKIRNSPL--SALGPAIHHLP-KLEELDLRGCTALR- 243

Query: 282 SIPEAFQHMVSLRLLSLAS-NELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSS 340
           + P  F     L+ L L   + L   +P     +  L +L L       +L  LI  L +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 341 GCTVN 345
            C + 
Sbjct: 303 NCIIL 307

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.2 bits (196), Expect = 5e-16
 Identities = 45/279 (16%), Positives = 89/279 (31%), Gaps = 23/279 (8%)

Query: 110 LLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFN 169
                  +    +      +       +      L L    P  + P     LS  ++  
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-VPLPQFPDQAFRLSHLQHMT 110

Query: 170 VENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSC----Y 225
           ++ + L  +   + +   + L  L L+   L          + L+ L+ L +R+C     
Sbjct: 111 IDAAGLMEL--PDTMQQFAGLETLTLARNPLRALPASI---ASLNRLRELSIRACPELTE 165

Query: 226 LPPI--NPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSI 283
           LP    +           ++++L L    +   S+   + NL  N+  L +  + L  ++
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQ-NLKSLKIRNSPLS-AL 221

Query: 284 PEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCT 343
             A  H+  L  L L         P  FG    L +L L        L   I  L+    
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT---- 277

Query: 344 VNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLN 381
              LE L L        +P  + +  +  ++ +  +   
Sbjct: 278 --QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 44/299 (14%), Positives = 81/299 (27%), Gaps = 75/299 (25%)

Query: 556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615
           + +    L    +       D    L   Q     +            N +  ++     
Sbjct: 10  HSSGRENLYFQGSTALRPYHDV---LSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTG 65

Query: 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF 675
            AL          +    + L L+S       P Q   L+ +Q + +             
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTID------------ 112

Query: 676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLD 735
                             A  ++ +P  +  F  L                     + L 
Sbjct: 113 ------------------AAGLMELPDTMQQFAGL---------------------ETLT 133

Query: 736 LSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQ---------LKSLDFLDLSR 786
           L+ N L  A+P  I  L  L  L++        +P  +           L +L  L L  
Sbjct: 134 LARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 787 NHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG----TQLQSFNASVYAGNLELCGLP 841
                ++P+S++ L  L  L +  + LS  +        +L+  +     G   L   P
Sbjct: 193 TGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR---GCTALRNYP 246

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 30/231 (12%), Positives = 60/231 (25%), Gaps = 48/231 (20%)

Query: 596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLA 655
           G       + S    L  + +             L           N   +  ++  +  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHD----VLSQWQRHYNADRNRW-HSAWRQANSN 56

Query: 656 FIQVLDLSLNNISGKIPKCFSNFSMMIQEK---SSNPIIGLANEILVVPGYIYYFRYLDN 712
             Q+   +   +         + +   +      S P+    ++                
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQFPDQA--------------- 100

Query: 713 VLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPK 772
                          L  ++++ + +  L   +P+ +    GL  L L+RN L  L P  
Sbjct: 101 -------------FRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLRAL-PAS 145

Query: 773 IGQLKSLDFLDLSRNHFSGNIPSSL---------SLLSGLSVLDLSYNSLS 814
           I  L  L  L +        +P  L           L  L  L L +  + 
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  121 bits (306), Expect = 2e-29
 Identities = 95/563 (16%), Positives = 180/563 (31%), Gaps = 112/563 (19%)

Query: 106 ISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGF 165
           I+P  +    L+      ++   + +P    ++        +        P    +    
Sbjct: 3   INPRNVSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 166 EYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCY 225
               + +                    L+L+ + L+       +      L++LV     
Sbjct: 61  AVSRLRDCLD------------RQAHELELNNLGLS------SLPELPPHLESLVASCNS 102

Query: 226 LPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE 285
           L  +      L +L       + +   L           L   + +L +  N L+  +PE
Sbjct: 103 LTELPELPQSLKSL----LVDNNNLKALSD---------LPPLLEYLGVSNNQLE-KLPE 148

Query: 286 AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVN 345
             Q+   L+++ + +N L+    K      SL  +    N+L  +L EL         + 
Sbjct: 149 -LQNSSFLKIIDVDNNSLK----KLPDLPPSLEFIAAGNNQLE-ELPELQN-------LP 195

Query: 346 SLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFT 405
            L  +    N +           SL+ +  G N L       L +L  L T+  D N   
Sbjct: 196 FLTAIYADNNSLKKLPDLPL---SLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK 250

Query: 406 GVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQN 465
                T      +L+ L + DN LT                           P   Q   
Sbjct: 251 -----TLPDLPPSLEALNVRDNYLT-------------------------DLPELPQ--- 277

Query: 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNN 525
            L  LD+S    S  +     +L   L++LN S+N I         L+     +++S+N 
Sbjct: 278 SLTFLDVSENIFS-GLS----ELPPNLYYLNASSNEIRSLCDLPPSLEE----LNVSNNK 328

Query: 526 FDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQ 585
               +P LP     L  S N  + +P+      +L  L++  N    + PD    + +++
Sbjct: 329 LIE-LPALPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLR 383

Query: 586 TLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG 645
                N+ L  E+P   +N   L+ L +  N L            +++  LR+ S     
Sbjct: 384 M----NSHLA-EVPELPQN---LKQLHVETNPL-----REFPDIPESVEDLRMNSERVVD 430

Query: 646 NIPFQLCHLAFIQVLDLSLNNIS 668
              F       ++      ++  
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (291), Expect = 2e-27
 Identities = 92/533 (17%), Positives = 171/533 (32%), Gaps = 99/533 (18%)

Query: 267 RNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNK 326
             +       ++L   +P   +++ S      A +E E   P   G    +    L    
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 327 LSGQLSEL------IQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHL 380
              Q  EL      + +L        LE L    N +T  +P+L    SLK L +  N+L
Sbjct: 70  DR-QAHELELNNLGLSSLPELPP--HLESLVASCNSLT-ELPEL--PQSLKSLLVDNNNL 123

Query: 381 NGTINKSLSHLF-KLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVP 439
                 +LS L   LE L +  N    +       N S L+++ + +NSL        +P
Sbjct: 124 K-----ALSDLPPLLEYLGVSNNQLEKLPE---LQNSSFLKIIDVDNNSLKK------LP 169

Query: 440 AF--QLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNL 497
                L++++  + ++    P        L ++   N  +   +PD    L      +  
Sbjct: 170 DLPPSLEFIAAGNNQLE-ELPELQNLPF-LTAIYADNNSLK-KLPDLPLSLES----IVA 222

Query: 498 SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNF 557
            NN +  +LP+L  L      I   +N     +P LP +   LN+  N  + LP+   + 
Sbjct: 223 GNNILE-ELPELQNLPFL-TTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSL 279

Query: 558 NSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA 617
             L +     +  S   P       N+  L+  +N +   L     +   L  L++  N 
Sbjct: 280 TFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPS---LEELNVSNNK 328

Query: 618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSN 677
           L       +      L  L    N+    +P    +L   + L +  N +  + P    +
Sbjct: 329 L-----IELPALPPRLERLIASFNHLA-EVPELPQNL---KQLHVEYNPLR-EFPDIPES 378

Query: 678 FSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLS 737
                        + + + +  VP                             +K L + 
Sbjct: 379 VE----------DLRMNSHLAEVP------------------------ELPQNLKQLHVE 404

Query: 738 SNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790
           +N L    P+       +  L ++   +             L+      +H  
Sbjct: 405 TNPL-REFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (289), Expect = 3e-27
 Identities = 87/546 (15%), Positives = 161/546 (29%), Gaps = 127/546 (23%)

Query: 292 SLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLS-------SGCTV 344
            L+     S+ L   +P    N+ S  + Y   ++                      C  
Sbjct: 12  FLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 345 NSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
                L L    ++  +P+L     L+ L    N L   + +    L  L   + +  + 
Sbjct: 71  RQAHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

Query: 405 TGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQ 464
           + +           L+ L +++N L                            P  LQ  
Sbjct: 127 SDLPP--------LLEYLGVSNNQLE-------------------------KLPE-LQNS 152

Query: 465 NQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSN 524
           + L  +D+ N  +   +PD    L      +   NN +  +LP+L  L      I   +N
Sbjct: 153 SFLKIIDVDNNSLK-KLPDLPPSLEF----IAAGNNQLE-ELPELQNLPFL-TAIYADNN 205

Query: 525 NFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNI 584
           +    +P LP +   +    N    LP+   N   L+ +   NN     +PD      ++
Sbjct: 206 SLKK-LPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK-TLPDLPP---SL 259

Query: 585 QTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
           + L++R+N L  +LP   ++ + L V +   + L    P        NL  L   SN   
Sbjct: 260 EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP--------NLYYLNASSNEIR 310

Query: 645 GNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYI 704
            ++      L   + L++S N +  ++P                       E L      
Sbjct: 311 -SLCDLPPSL---EELNVSNNKLI-ELPALPPRL-----------------ERL------ 342

Query: 705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLV----------- 753
                     L       E       +K L +  N L    P+    +            
Sbjct: 343 ----IASFNHLA------EVPELPQNLKQLHVEYNPL-REFPDIPESVEDLRMNSHLAEV 391

Query: 754 -----GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDL 808
                 L  L++  N L    P     ++ L    ++          +      L     
Sbjct: 392 PELPQNLKQLHVETNPLREF-PDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVF 447

Query: 809 SYNSLS 814
            ++   
Sbjct: 448 EHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 5e-18
 Identities = 69/362 (19%), Positives = 126/362 (34%), Gaps = 73/362 (20%)

Query: 480 TIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDIS------------SNNFD 527
            +P    ++         + +      P  +  + +  V  +             +N   
Sbjct: 25  EMPVEAENVK-SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83

Query: 528 GPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
             +P LP +   L  S N  + LP+   +  SL + N      S   P        ++ L
Sbjct: 84  SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYL 136

Query: 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI 647
            + NN+L  +LP  L+N S L+++D+  N+L       +     +L  +   +N     +
Sbjct: 137 GVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL-----KKLPDLPPSLEFIAAGNNQLE-EL 188

Query: 648 PFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYF 707
           P +L +L F+  +    N++  K+P    +   ++    +N +  L  E+          
Sbjct: 189 P-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIV--AGNNILEEL-PEL---------- 233

Query: 708 RYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG 767
                               L F+  +   +N L + +P+       L ALN+  N LT 
Sbjct: 234 ------------------QNLPFLTTIYADNNLL-KTLPDLPP---SLEALNVRDNYLTD 271

Query: 768 LIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFN 827
           L P     L  LD  +   +  S        L   L  L+ S N +     L   L+  N
Sbjct: 272 L-PELPQSLTFLDVSENIFSGLS-------ELPPNLYYLNASSNEIRSLCDLPPSLEELN 323

Query: 828 AS 829
            S
Sbjct: 324 VS 325

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.8 bits (200), Expect = 5e-16
 Identities = 57/333 (17%), Positives = 110/333 (33%), Gaps = 62/333 (18%)

Query: 495 LNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCW 554
               +++++ ++P  +           + + ++   PP           +   S L DC 
Sbjct: 16  PLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPP-----GNGEQREMAVSRLRDCL 69

Query: 555 LNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR 614
                   L L N   S  +P+      ++++L    N L  ELP   ++   L V +  
Sbjct: 70  DR--QAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNN 122

Query: 615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKC 674
             AL              L  L + SNN    +P +L + +F++++D+  N++  K+P  
Sbjct: 123 LKAL--------SDLPPLLEYLGV-SNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDL 171

Query: 675 FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYL 734
             +   +     +N +  L  E+                              L F+  +
Sbjct: 172 PPSLEFI--AAGNNQLEEL-PEL----------------------------QNLPFLTAI 200

Query: 735 DLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIP 794
              +N L + +P+       L ++    N L     P++  L  L  +    N     +P
Sbjct: 201 YADNNSL-KKLPDLPL---SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLP 253

Query: 795 SSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFN 827
                L  L+V D     L       T L    
Sbjct: 254 DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE 286

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.0 bits (159), Expect = 5e-11
 Identities = 43/249 (17%), Positives = 84/249 (33%), Gaps = 35/249 (14%)

Query: 581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS 640
              +Q     ++ L  E+P   +N           +      P   G   + + + RL+ 
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRD 67

Query: 641 NNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVV 700
                      C       L+L+   +S  +P+   +   ++   S N +  L       
Sbjct: 68  -----------CLDRQAHELELNNLGLS-SLPELPPHLESLVA--SCNSLTELPELP--- 110

Query: 701 PGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNL 760
              +      +N       +          ++YL +S+N+L + +PE + +   L  +++
Sbjct: 111 -QSLKSLLVDNN-------NLKALSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDV 160

Query: 761 SRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG 820
             N+L  L P     L+ +       N     +P  L  L  L+ +    NSL     L 
Sbjct: 161 DNNSLKKL-PDLPPSLEFIA---AGNNQLE-ELPE-LQNLPFLTAIYADNNSLKKLPDLP 214

Query: 821 TQLQSFNAS 829
             L+S  A 
Sbjct: 215 LSLESIVAG 223

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (295), Expect = 6e-29
 Identities = 59/336 (17%), Positives = 115/336 (34%), Gaps = 65/336 (19%)

Query: 282 SIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSG 341
           +I E  Q+    ++  +  + L+  +     +  ++ +L L  N LS   +  +   +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-- 58

Query: 342 CTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG 401
                LE L L +N +     DL    +L+ L L  N++     + L     +ETL    
Sbjct: 59  ----KLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 402 NSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWL 461
           N+ + V            + ++LA+N +T            L+ L               
Sbjct: 109 NNISRVSCSRG----QGKKNIYLANNKIT-----------MLRDLDEGCRS--------- 144

Query: 462 QTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDI 521
               ++  LD+    I           S  L  LNL  N I   +    V          
Sbjct: 145 ----RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVF--------- 190

Query: 522 SSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFL 581
                        +    L+LS NK + +   + +   ++ ++L NN+    I  ++ F 
Sbjct: 191 -------------AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236

Query: 582 HNIQTLSLRNNRLN-GELPSSLKNCSKLRVLDLRKN 616
            N++   LR N  + G L        +++ +  +  
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (272), Expect = 5e-26
 Identities = 55/352 (15%), Positives = 103/352 (29%), Gaps = 60/352 (17%)

Query: 236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRL 295
           +       +   ++D+ L        L   + N+  LDL  N L             L L
Sbjct: 5   IKQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAN 355
           L+L+SN L         ++ +L  L L  N +  +L              S+E L    N
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGP----------SIETLHAANN 109

Query: 356 DITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSN 415
           +I+  +    R    K + L  N +    +       +++ L L  N    V      ++
Sbjct: 110 NISR-VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 416 MSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNI 475
              L+ L L  N +                               +     L +LD+S+ 
Sbjct: 168 SDTLEHLNLQYNFIY-------------------------DVKGQVVFAK-LKTLDLSSN 201

Query: 476 GISDTIPDWFWDLSIELFFLNLSNNHIS------GKLPDLSVLKSDDIVIDISSNNFDGP 529
            ++  +   F   +  + +++L NN +           +L          D+  N F   
Sbjct: 202 KLA-FMGPEFQSAA-GVTWISLRNNKLVLIEKALRFSQNLEHF-------DLRGNGFHCG 252

Query: 530 IPP--LPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG 579
                   N     ++K     L        ++  L          +P    
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (272), Expect = 6e-26
 Identities = 55/298 (18%), Positives = 106/298 (35%), Gaps = 28/298 (9%)

Query: 132 PEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLR 191
            E   + ++ +   ++  +    +    +     +  ++   N  S  S   L+  + L 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLE 61

Query: 192 HLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN 251
            L+LS   L ++ D    +  L +L+TL L + Y+  +            SIETL  ++N
Sbjct: 62  LLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQELLV--------GPSIETLHAANN 109

Query: 252 HLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEG-GIPKF 310
           ++   S      +  +   ++ L  N +             ++ L L  NE++     + 
Sbjct: 110 NISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 311 FGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSL 370
             +  +L  L L  N +         ++        L+ L L +N +    P+      +
Sbjct: 165 AASSDTLEHLNLQYNFIY--------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV 216

Query: 371 KVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
             + L  N L   I K+L     LE   L GN F       FFS    +Q +      
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (264), Expect = 7e-25
 Identities = 58/270 (21%), Positives = 100/270 (37%), Gaps = 24/270 (8%)

Query: 549 GLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKL 608
            + +   N N   I  + ++     +        N++ L L  N L+    + L   +KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 609 RVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668
            +L+L  N L  E       SL  L  L L +N        +L     I+ L  + NNIS
Sbjct: 61  ELLNLSSNVL-YETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 669 GKIPKCFSNFSMMIQEK-SSNPIIGLANEILVVPGYIYYFRYLD---NVLLTWKGSEHEY 724
            ++    S          ++N I  L +      G     +YLD   N + T   +  E 
Sbjct: 113 -RVS--CSRGQGKKNIYLANNKITMLRDLDE---GCRSRVQYLDLKLNEIDT--VNFAEL 164

Query: 725 KSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDL 784
            ++   +++L+L  N +   +  ++     L  L+LS N L   + P+      + ++ L
Sbjct: 165 AASSDTLEHLNLQYNFI-YDVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221

Query: 785 SRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
             N     I  +L     L   DL  N   
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (253), Expect = 2e-23
 Identities = 62/332 (18%), Positives = 110/332 (33%), Gaps = 49/332 (14%)

Query: 518 VIDISSNNFDGPIPPLPSNS---TFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGK 573
           +  ++ ++    +  L  ++     L+LS N  S +    L  F  L +LNL++N    +
Sbjct: 14  IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-E 72

Query: 574 IPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633
             D +  L  ++TL L NN +       L     +  L    N +   V        Q  
Sbjct: 73  TLD-LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSC---SRGQGK 122

Query: 634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG-KIPKCFSNFSMMIQEK-SSNPII 691
             + L +N             + +Q LDL LN I      +  ++   +       N I 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 692 GLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITD 751
            +  +++                                +K LDLSSNKL   +  E   
Sbjct: 183 DVKGQVV-----------------------------FAKLKTLDLSSNKL-AFMGPEFQS 212

Query: 752 LVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN 811
             G+T ++L  N L   I   +   ++L+  DL  N F               V  ++  
Sbjct: 213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQ 270

Query: 812 SLSGKIPLGTQLQSFNASVYAGNLELCGLPLP 843
           ++        +  +     + G      LP P
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.2 bits (240), Expect = 1e-21
 Identities = 51/322 (15%), Positives = 113/322 (35%), Gaps = 40/322 (12%)

Query: 390 HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLA 449
           +  + +   +  +S    ++     +  N++ L L+ N L+       + A  L   +  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQ------ISAADLAPFT-- 58

Query: 450 SCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDL 509
                           +L  L++S+  + +   D    LS  L  L+L+NN++  +L   
Sbjct: 59  ----------------KLELLNLSSNVLYE-TLD-LESLS-TLRTLDLNNNYVQ-ELLVG 98

Query: 510 SVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDC-WLNFNSLSILNLANN 568
             +++    +  ++NN              + L+ NK + L D      + +  L+L  N
Sbjct: 99  PSIET----LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 569 RFSG-KIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVG 627
                   +       ++ L+L+ N +  ++   +   +KL+ LDL  N L   +     
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQ 211

Query: 628 GSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSS 687
                +  + L++N     I   L     ++  DL  N       + F + +  +Q  + 
Sbjct: 212 S-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

Query: 688 NPIIGLANEILVVPGYIYYFRY 709
             +  L  +            Y
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.6 bits (202), Expect = 7e-17
 Identities = 38/253 (15%), Positives = 75/253 (29%), Gaps = 63/253 (24%)

Query: 574 IPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633
           I +     +  +   + ++ L   L S  ++   ++ LDL  N L  ++          L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKL 60

Query: 634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693
            +L L SN  +  +  +   L+ ++ LDL                       ++N +  L
Sbjct: 61  ELLNLSSNVLYETLDLE--SLSTLRTLDL-----------------------NNNYVQEL 95

Query: 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLV 753
                                                ++ L  ++N +   +        
Sbjct: 96  --------------------------------LVGPSIETLHAANNNI-SRVSCSR--GQ 120

Query: 754 GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG-NIPSSLSLLSGLSVLDLSYNS 812
           G   + L+ N +T L     G    + +LDL  N     N     +    L  L+L YN 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 813 LSGKIPLGTQLQS 825
           +   +        
Sbjct: 181 IY-DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 55/285 (19%), Positives = 99/285 (34%), Gaps = 35/285 (12%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
            L     L  L+LS N    +     + SLS LR L+L+      ++          E  
Sbjct: 53  DLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLN-NNYVQELLV----GPSIETL 104

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPP 228
           +  N+N+  V      S     +++ L+   +T   D          ++ L L+   +  
Sbjct: 105 HAANNNISRV----SCSRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEIDT 158

Query: 229 INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQ 288
           +N +   L   S ++E L+L  N +    V   +      +  LDL  N L   +   FQ
Sbjct: 159 VNFA--ELAASSDTLEHLNLQYNFI--YDVKGQVVF--AKLKTLDLSSNKLA-FMGPEFQ 211

Query: 289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG-----------QLSELIQN 337
               +  +SL +N+L   I K      +L    L  N               ++  + + 
Sbjct: 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 338 LSSGCTVNSLEGLCLYANDITGPI--PDLGRFLSLKVLKLGENHL 380
                T  + E   +      G     DL    + +++ LG +H 
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 4e-13
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 722 HEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDF 781
           HE K      K   ++ + L +A+         +  L+LS N L+ +    +     L+ 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 782 LDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNAS 829
           L+LS N         L  LS L  LDL+ N +  ++ +G  +++ +A+
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAA 107

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 8e-09
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 744 AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGL 803
           AI E   +        ++ ++L   +        ++  LDLS N  S    + L+  + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 804 SVLDLSYNSLSGKIPLG--TQLQSFNAS 829
            +L+LS N L   + L   + L++ + +
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLN 88

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  120 bits (302), Expect = 6e-29
 Identities = 92/419 (21%), Positives = 146/419 (34%), Gaps = 55/419 (13%)

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPK-FFGNMCSLNQLYL 322
            L  ++ ++DL  N +      +F  +  L+ L +        I    F  + SL  L L
Sbjct: 27  ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 323 PRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG 382
             N+     +     L+      +LE L L   ++ G +     F  L            
Sbjct: 87  DYNQFLQLETGAFNGLA------NLEVLTLTQCNLDGAVLSGNFFKPLT----------- 129

Query: 383 TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWV--PA 440
                      LE L L  N+   +   +FF NM    +L L  N +      D +    
Sbjct: 130 ----------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179

Query: 441 FQLKWLSLASCKMGPHFPNWLQT--------QNQLISLDISNIGISDTIPDWFWDLSIEL 492
                L L+S  +      WL             + +LD+S  G  +++   F+D     
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 493 FFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD 552
              +L  ++                  D  +  F G      S     +LSK+K   L  
Sbjct: 240 KIQSLILSNSYNMGSSF----GHTNFKDPDNFTFKGLE---ASGVKTCDLSKSKIFALLK 292

Query: 553 C-WLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLSLRNNRLNGELPS-SLKNCSKL 608
             + +F  L  L LA N  + KI D+  F  L ++  L+L  N L G + S   +N  KL
Sbjct: 293 SVFSHFTDLEQLTLAQNEIN-KIDDNA-FWGLTHLLKLNLSQNFL-GSIDSRMFENLDKL 349

Query: 609 RVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ-LCHLAFIQVLDLSLNN 666
            VLDL  N +   +       L NL  L L +N    ++P      L  +Q + L  N 
Sbjct: 350 EVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 3e-20
 Identities = 89/470 (18%), Positives = 147/470 (31%), Gaps = 109/470 (23%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
           +  +L+ L+ L + +   G          LS L  L L                      
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD--------------------- 87

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKS---SDWFQVVSQLHSLKTLVLRSCY 225
                N F        + L++L  L L+  NL  +    ++F+    L SL+ LVLR   
Sbjct: 88  ----YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK---PLTSLEMLVLRDNN 140

Query: 226 LPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQ----- 280
           +  I P+    F        LDL+ N + S      L    ++   L L    LQ     
Sbjct: 141 IKKIQPAS--FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 281 ---GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL-YLPRNKLSGQLSELIQ 336
                         S+  L L+ N  +  + K F +  +  ++  L  +      S    
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 337 NLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLET 396
                    + +GL                   +K   L ++ +   +    SH   LE 
Sbjct: 259 TNFKDPDNFTFKGL---------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303

Query: 397 LSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF------QLKWLSLAS 450
           L+L  N     I +  F  +++L  L L+ N L        + +       +L+ L L+ 
Sbjct: 304 LTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG------SIDSRMFENLDKLEVLDLSY 356

Query: 451 CKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS----GKL 506
                         N + +L              F  L   L  L L  N +     G  
Sbjct: 357 --------------NHIRALG----------DQSFLGLP-NLKELALDTNQLKSVPDGIF 391

Query: 507 PDLSVLKSDDIVIDISSNNFD---GPIPPLPSNSTFLNLSKNKFSGLPDC 553
             L+ L+     I + +N +D     I  L   S +LN +  K  G   C
Sbjct: 392 DRLTSLQ----KIWLHTNPWDCSCPRIDYL---SRWLNKNSQKEQGSAKC 434

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.9 bits (231), Expect = 5e-20
 Identities = 78/465 (16%), Positives = 132/465 (28%), Gaps = 110/465 (23%)

Query: 184 LSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSI 243
            S L  L+ L +                 L SL  L L       +       FN   ++
Sbjct: 50  FSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG---AFNGLANL 105

Query: 244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNE 302
           E L L+  +L  +                          +    F+ + SL +L L  N 
Sbjct: 106 EVLTLTQCNLDGA-------------------------VLSGNFFKPLTSLEMLVLRDNN 140

Query: 303 LEGGIPK-FFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPI 361
           ++   P  FF NM   + L L  NK+     E + N            L L +  +    
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG----KHFTLLRLSSITL---- 192

Query: 362 PDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQM 421
                        + E  L      +      + TL L GN F   +++ FF  ++  ++
Sbjct: 193 -----------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 422 LFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTI 481
             L  ++     S                                    D          
Sbjct: 242 QSLILSNSYNMGSSF--------------------------GHTNFKDPD---------- 265

Query: 482 PDWFWDLSI-ELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFL 540
              F  L    +   +LS + I                  +  + F        ++   L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF----------------ALLKSVFSH-----FTDLEQL 304

Query: 541 NLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
            L++N+ + + D  +     L  LNL+ N            L  ++ L L  N +     
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364

Query: 600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
            S      L+ L L  N L   VP  +   L +L  + L +N + 
Sbjct: 365 QSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 86/466 (18%), Positives = 144/466 (30%), Gaps = 119/466 (25%)

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
            +  + L  N +      S S L  L+ L ++  +   VI    F  +S+L +L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 429 LTLKLSHDWVPAF----QLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDW 484
              +L      AF     L+ L+L                  L    +S         ++
Sbjct: 91  FL-QLETG---AFNGLANLEVLTLTQ--------------CNLDGAVLS--------GNF 124

Query: 485 FWDLSIELFFLNLSNNHISGKLPD-----LSVLKSDDIVIDISSNNFDGPIPPLPSNSTF 539
           F  L+  L  L L +N+I    P      +        V+D++ N     I         
Sbjct: 125 FKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFH----VLDLTFNKVKS-ICE----EDL 174

Query: 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
           LN     F+      L  +S+++ ++       +   +     +I TL L  N     + 
Sbjct: 175 LNFQGKHFT-----LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229

Query: 600 S---SLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAF 656
                    +K++ L L  +         +G S  +       +  F G     +     
Sbjct: 230 KRFFDAIAGTKIQSLILSNS-------YNMGSSFGHTNFKDPDNFTFKGLEASGV----- 277

Query: 657 IQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLT 716
            +  DLS + I                                +   +  F +  ++   
Sbjct: 278 -KTCDLSKSKIF------------------------------ALLKSV--FSHFTDL--- 301

Query: 717 WKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITD-LVGLTALNLSRNNLTGLIPPKIGQ 775
                          + L L+ N++   I +     L  L  LNLS+N L  +       
Sbjct: 302 ---------------EQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345

Query: 776 LKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
           L  L+ LDLS NH       S   L  L  L L  N L   +P G 
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGI 390

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.0 bits (182), Expect = 7e-14
 Identities = 52/304 (17%), Positives = 92/304 (30%), Gaps = 59/304 (19%)

Query: 530 IPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIP-DSMGFLHNIQTL 587
           +P LP++  +++LS N  + L +        L  L +        I  ++   L ++  L
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84

Query: 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNAL-FGEVPTCVGGSLQNLIILRLKSNNFHGN 646
            L  N+       +    + L VL L +  L    +       L +L +L L+ NN    
Sbjct: 85  KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 647 IPFQL-CHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIY 705
            P     ++    VLDL+ N +     +   NF                           
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK------------------------ 180

Query: 706 YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNL 765
           +F  L                 L  +   D++   L             +T L+LS N  
Sbjct: 181 HFTLLR----------------LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 766 TGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSL---------------LSGLSVLDLSY 810
              +  +     +   +       S N+ SS                   SG+   DLS 
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 811 NSLS 814
           + + 
Sbjct: 285 SKIF 288

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 55/247 (22%), Positives = 103/247 (41%), Gaps = 20/247 (8%)

Query: 80  TTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLS 139
              H  +L L +   +     +L  +      K   +  LDLS N F  S    F  +++
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 140 KLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCIN 199
             +  +L          + +   S F + N ++ + F+   LE     S ++  DLS   
Sbjct: 238 GTKIQSLIL-------SNSYNMGSSFGHTNFKDPDNFTFKGLEA----SGVKTCDLSKSK 286

Query: 200 LTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVY 259
           +        V S    L+ L L    +  I+ +    F   T +  L+LS N L   S+ 
Sbjct: 287 IFALLK--SVFSHFTDLEQLTLAQNEINKIDDN---AFWGLTHLLKLNLSQNFL--GSID 339

Query: 260 PWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLN 318
             +F     +  LDL +NH++ ++ + +F  + +L+ L+L +N+L+      F  + SL 
Sbjct: 340 SRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398

Query: 319 QLYLPRN 325
           +++L  N
Sbjct: 399 KIWLHTN 405

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (298), Expect = 4e-28
 Identities = 88/432 (20%), Positives = 159/432 (36%), Gaps = 42/432 (9%)

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
           +LS+    L++  N++          +  LR+L ++ N ++      F     L  L L 
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL---SLKVLKLGENHL 380
            NKL          +S   TVN L+ L L  N     +P    F     LK L L   HL
Sbjct: 78  HNKL--------VKISCHPTVN-LKHLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTTHL 127

Query: 381 NGTINKSLSHLFKLETLSLDGNSFTGVISETFFSN--MSNLQMLFLADNSLTLKLSHDWV 438
             +    ++HL   + L + G ++          +    +L ++F  +      L     
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 439 PAFQLKWLSLA------SCKMGPHFPNWLQTQNQLISLDISNIGISD----TIPDWFWDL 488
               L+  ++        C         LQT  +L +L ++NI  +      I    W  
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247

Query: 489 SIELFFLNLSNNHISGKLP---------DLSVLKSDDIVIDISSNNFDGPIPPLPSNSTF 539
           ++   + ++SN  + G+L           L  L    +V D+             SN   
Sbjct: 248 TVW--YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF-SNMNI 304

Query: 540 LNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN--G 596
            N + +    +   C    +    L+ +NN  +  + ++ G L  ++TL L+ N+L    
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 597 ELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAF 656
           ++         L+ LD+ +N++  +         ++L+ L + SN     I   L     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR-- 422

Query: 657 IQVLDLSLNNIS 668
           I+VLDL  N I 
Sbjct: 423 IKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (254), Expect = 1e-22
 Identities = 84/495 (16%), Positives = 160/495 (32%), Gaps = 67/495 (13%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPH-PFRDLSGFEY 167
            +L L  LR L +S N      +  F     +L YL+LS     +K+           ++
Sbjct: 40  DILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLS----HNKLVKISCHPTVNLKH 94

Query: 168 FNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLP 227
            ++  +   ++   +   ++S L+ L LS  +L KSS     ++ L+  K L++      
Sbjct: 95  LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYG 152

Query: 228 PINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPW--------LFNLSRNILHLDLGFNHL 279
                   L + +T    +    N      +           L N+   +      +   
Sbjct: 153 EKE-DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

Query: 280 QGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLS 339
             +  +    + +L L ++ +               ++    +   KL GQL     +  
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY- 270

Query: 340 SGCTVNSLEGLCLYANDITGPIPDLGRFLS-LKVLKLGENHLNGTINKSLSHLFKLETLS 398
           SG ++ +L    + ++    P   +    S + +     +          S +     L 
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 399 LDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFP 458
              N  T  + E    +++ L+ L L  N L                  L          
Sbjct: 331 FSNNLLTDTVFEN-CGHLTELETLILQMNQLK----------------EL------SKIA 367

Query: 459 NWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIV 518
                   L  LDIS   +S          +  L  LN+S+N ++               
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT--------------- 412

Query: 519 IDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSM 578
                   D     LP     L+L  NK   +P   +   +L  LN+A+N+    +PD +
Sbjct: 413 --------DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGI 463

Query: 579 -GFLHNIQTLSLRNN 592
              L ++Q + L  N
Sbjct: 464 FDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 97.6 bits (243), Expect = 3e-21
 Identities = 86/491 (17%), Positives = 164/491 (33%), Gaps = 56/491 (11%)

Query: 172 NSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINP 231
           + N  S      +  LS LR L +S   +        V      L+ L L    L  I  
Sbjct: 29  SQNYISELWTSDILSLSKLRILIISHNRIQYLDI--SVFKFNQELEYLDLSHNKLVKI-- 84

Query: 232 SFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMV 291
           S     NL    + LDLS N   +  +     N+S  +  L L   HL+ S      H+ 
Sbjct: 85  SCHPTVNL----KHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTHLEKSSVLPIAHLN 139

Query: 292 SLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQN---LSSGCTVNSLE 348
             ++L +               +   N   L     + +    I +    +      S  
Sbjct: 140 ISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 349 GLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFK------LETLSLDGN 402
              L  N  +  +  L +  +   L     +   T   S   + +      +   S+   
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 403 SFTGVISETFFS----NMSNLQMLFLADNSLTLKLS--HDWVPAFQLKWLSLASCKMGP- 455
              G +    F     ++  L +  +  +      S  ++      +K  +++  +M   
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 456 HFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSD 515
             P+ +   +  + LD SN  ++DT+ +    L+ EL  L L  N +  +L  +      
Sbjct: 318 LCPSKI---SPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLK-ELSKI------ 366

Query: 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNK--FSGLPDCWLNFNSLSILNLANNRFSGK 573
                  +            +   L++S+N   +           SL  LN+++N  +  
Sbjct: 367 -------AEMTTQ-----MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 574 IPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633
           I         I+ L L +N++   +P  +     L+ L++  N L   VP  +   L +L
Sbjct: 415 IFRC--LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSL 470

Query: 634 IILRLKSNNFH 644
             + L +N + 
Sbjct: 471 QKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.1 bits (226), Expect = 3e-19
 Identities = 60/322 (18%), Positives = 122/322 (37%), Gaps = 20/322 (6%)

Query: 118 HLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFE--------YFN 169
           H+    N      +   + +++ L   N+ C    +K  +    L+  +          N
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228

Query: 170 VENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPI 229
              +   S   + +L   +++ +  +S + L    D+        SLK L +        
Sbjct: 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288

Query: 230 NPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQH 289
                +++ + +++   + + +      +     +     LHLD   N L  ++ E   H
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGH 346

Query: 290 MVSLRLLSLASNELE--GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347
           +  L  L L  N+L+    I +    M SL QL + +N +S    +   +        SL
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-----WTKSL 401

Query: 348 EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGV 407
             L + +N +T  I        +KVL L  N +  +I K +  L  L+ L++  N     
Sbjct: 402 LSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-S 458

Query: 408 ISETFFSNMSNLQMLFLADNSL 429
           + +  F  +++LQ ++L  N  
Sbjct: 459 VPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 90.3 bits (224), Expect = 7e-19
 Identities = 85/473 (17%), Positives = 160/473 (33%), Gaps = 87/473 (18%)

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
              +L + +N+++      +  L KL  L +  N    +    F      L+ L L+ N 
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNK 80

Query: 429 LTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL 488
           L  K+S        LK L L+               N   +L I            F ++
Sbjct: 81  LV-KISCHPTV--NLKHLDLSF--------------NAFDALPICKE---------FGNM 114

Query: 489 SIELFFLNLSNNHI-SGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNL----- 542
           S +L FL LS  H+    +  ++ L    +++ +     +   P    +    +L     
Sbjct: 115 S-QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173

Query: 543 SKNKFSGLPDCWLN-FNSLSILNLANNRFSGKIPDSMGFLHNIQT------LSLRNNRLN 595
           +  +F  + D  +    +L + N+       K    +  L  +QT      L+L N    
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 596 GELPSSLKNC---SKLRVLDLRKNALFG----EVPTCVGGSLQNLIILRLKSNNFHGNIP 648
                 +      + +    +    L G          G SL+ L I ++ S+ F     
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 649 FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFR 708
           +     + + + + +++        C S  S                           F 
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS--------------------------PFL 327

Query: 709 YLD---NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI---TDLVGLTALNLSR 762
           +LD   N+L     +  E    L  ++ L L  N+L + + +     T +  L  L++S+
Sbjct: 328 HLDFSNNLLTD---TVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQ 383

Query: 763 NNLTGLIPPKI-GQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           N+++           KSL  L++S N  +  I   L     + VLDL  N + 
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (299), Expect = 5e-28
 Identities = 69/429 (16%), Positives = 134/429 (31%), Gaps = 50/429 (11%)

Query: 226 LPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE 285
            P          NL       D+  +       + +      N   +    + ++     
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69

Query: 286 AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVN 345
                  + LL+L   ++E      F    ++ +LY+  N +      + QN+       
Sbjct: 70  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP------ 123

Query: 346 SLEGLCLYANDITG-PIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
            L  L L  ND++  P         L  L +  N+L    + +      L+ L L  N  
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 405 TGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQ 464
           T V          +L    ++ N L+  L+        ++ L  +   +           
Sbjct: 184 THVDLSLI----PSLFHANVSYNLLS-TLA----IPIAVEELDASHNSINVVRGPVNV-- 232

Query: 465 NQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSN 524
            +L  L + +  ++D    W  +    L  ++LS N +                  I  +
Sbjct: 233 -ELTILKLQHNNLTD--TAWLLNYP-GLVEVDLSYNELE----------------KIMYH 272

Query: 525 NFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNI 584
            F             L +S N+   L        +L +L+L++N     +  +      +
Sbjct: 273 PFVK-----MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326

Query: 585 QTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
           + L L +N +   L  S      L+ L L  N         +    +N+    +   + H
Sbjct: 327 ENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDW---DCNSLRALFRNVARPAVDDADQH 380

Query: 645 GNIPFQLCH 653
             I +QL H
Sbjct: 381 CKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  107 bits (268), Expect = 4e-24
 Identities = 76/399 (19%), Positives = 137/399 (34%), Gaps = 60/399 (15%)

Query: 106 ISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGF 165
           I   L        + +           E I +L+  + +                     
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFK------------------ 59

Query: 166 EYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSC 224
                  ++         L     +  L+L+ + + +  +  F   +  H+++ L +   
Sbjct: 60  -------NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF---AYAHTIQKLYMGFN 109

Query: 225 YLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIP 284
            +  + P    +F     +  L L  N L  SS+   +F+ +  +  L +  N+L+    
Sbjct: 110 AIRYLPPH---VFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 285 EAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTV 344
           + FQ   SL+ L L+SN L   +      + SL    +  N LS  L+  I         
Sbjct: 165 DTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-TLAIPI--------- 211

Query: 345 NSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
            ++E L    N I   +      + L +LKL  N+L  T    L +   L  + L  N  
Sbjct: 212 -AVEELDASHNSINV-VRG-PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNEL 266

Query: 405 TGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQ 464
              I    F  M  L+ L++++N L   L+    P   LK L L+   +  H        
Sbjct: 267 E-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323

Query: 465 NQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS 503
           ++L +L + +  I          L      L LS+N   
Sbjct: 324 DRLENLYLDHNSIVTLKLSTHHTLKN----LTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.0 bits (223), Expect = 1e-18
 Identities = 74/365 (20%), Positives = 125/365 (34%), Gaps = 41/365 (11%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
            L   R +  L+L+                  ++ L +         PH F+++      
Sbjct: 70  LLDSFRQVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLP 227
            +E ++L S+       +   L  L +S  NL +   D FQ      SL+ L L S  L 
Sbjct: 129 VLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQ---ATTSLQNLQLSSNRLT 184

Query: 228 PINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAF 287
            ++ S I       S+   ++S N L +         +   +  LD   N +        
Sbjct: 185 HVDLSLI------PSLFHANVSYNLLST-------LAIPIAVEELDASHNSINVVRGPVN 231

Query: 288 QHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347
                L +L L  N L      +  N   L ++ L  N+L   +      +        L
Sbjct: 232 V---ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ------RL 280

Query: 348 EGLCLYANDITGPIPDLGRFL-SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG 406
           E L +  N +   +   G+ + +LKVL L  NHL   + ++     +LE L LD NS   
Sbjct: 281 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338

Query: 407 VISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQ 466
           +      S    L+ L L+ N        + + A        A      H     Q ++ 
Sbjct: 339 L----KLSTHHTLKNLTLSHN----DWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHG 390

Query: 467 LISLD 471
           L   +
Sbjct: 391 LCCKE 395

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 59/373 (15%), Positives = 118/373 (31%), Gaps = 38/373 (10%)

Query: 113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVEN 172
           +  L H ++S N          +     +  L+ S     + +  P           +++
Sbjct: 191 IPSLFHANVSYNLL------STLAIPIAVEELDAS-HNSINVVRGPV--NVELTILKLQH 241

Query: 173 SNLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLPPINP 231
           +NL     L    +   L  +DLS   L K     F    ++  L+ L + +  L  +N 
Sbjct: 242 NNLTDTAWL---LNYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNNRLVALNL 295

Query: 232 SFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMV 291
               +  L    + LDLS NHL    V          + +L L  N +  ++        
Sbjct: 296 YGQPIPTL----KVLDLSHNHL--LHVERNQPQFD-RLENLYLDHNSIV-TLK--LSTHH 345

Query: 292 SLRLLSLASNELEGG-IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGL 350
           +L+ L+L+ N+ +   +   F N+         ++       E    L    +       
Sbjct: 346 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLE--HGLCCKESDKPYLDR 403

Query: 351 CLYANDITGPIPDL----GRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG 406
            L    +T  +  +    GR  +   +   ++  +    +    L   E L  + N    
Sbjct: 404 LLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRA 463

Query: 407 VISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQ 466
            + +     +   Q+L      +   L    +P   L   S    K+  H       + Q
Sbjct: 464 EVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTH-----LKERQ 518

Query: 467 LISLDISNIGISD 479
              L  +    ++
Sbjct: 519 AFKLRETQARRTE 531

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (279), Expect = 3e-26
 Identities = 78/437 (17%), Positives = 140/437 (32%), Gaps = 86/437 (19%)

Query: 172 NSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINP 231
           +     V        L++ + +      + K                       LP    
Sbjct: 29  DMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-----------------------LPA--- 62

Query: 232 SFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMV 291
               L +    +E L+L+D  +    +  + F  +  I  L +GFN ++   P  FQ++ 
Sbjct: 63  ---ALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 292 SLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLC 351
            L +L L  N+L       F N   L  L +  N L     +  Q  +      SL+ L 
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------SLQNLQ 171

Query: 352 LYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISET 411
           L +N +T  +  L    SL    +  N L      +L+    +E L    NS   V    
Sbjct: 172 LSSNRLTH-VD-LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVRGPV 224

Query: 412 FFSNMSNLQMLFLADNSLTLKLSHDWVPAF----QLKWLSLASCKMGPHFPNWLQTQNQL 467
                  L +L L  N+LT                L  + L+  ++     +      +L
Sbjct: 225 N----VELTILKLQHNNLTD------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274

Query: 468 ISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFD 527
             L ISN  +   +  +   +   L  L+LS+NH+                  +  N   
Sbjct: 275 ERLYISNNRLVA-LNLYGQPIP-TLKVLDLSHNHLL----------------HVERNQPQ 316

Query: 528 GPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
                       L L  N    L       ++L  L L++N +            N+   
Sbjct: 317 FD------RLENLYLDHNSIVTLKLS--THHTLKNLTLSHNDWDC--NSLRALFRNVARP 366

Query: 588 SLRNNRLNGELPSSLKN 604
           ++ +   + ++   L++
Sbjct: 367 AVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 9e-24
 Identities = 65/451 (14%), Positives = 137/451 (30%), Gaps = 93/451 (20%)

Query: 368 LSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
                + +     +         L   + ++   ++    +      +   +++L L D 
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL 79

Query: 428 SLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWD 487
            +    ++ +  A  ++ L +    +    P+  Q    L  L +    +S      F +
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 488 LSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKF 547
              +L  L++SNN++                  I  + F        ++   L LS N+ 
Sbjct: 140 TP-KLTTLSMSNNNLE----------------RIEDDTFQAT-----TSLQNLQLSSNRL 177

Query: 548 SGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSK 607
           + +        SL   N++ N  S     ++     ++ L   +N +N  +   +    +
Sbjct: 178 THVDLS--LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVE 227

Query: 608 LRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNI 667
           L +L L+ N L  +    +      L+ + L  N     +      +  ++ L +S N +
Sbjct: 228 LTILKLQHNNL-TDTAWLLN--YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 668 SGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKST 727
              +                                                        
Sbjct: 285 V-ALNLYGQP-------------------------------------------------- 293

Query: 728 LGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRN 787
           +  +K LDLS N L   +         L  L L  N++  L   K+    +L  L LS N
Sbjct: 294 IPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHN 349

Query: 788 HFSGNIPSSLSLLSGLSVLDLSYNSLSGKIP 818
            +  N  S  +L   ++   +       KI 
Sbjct: 350 DWDCN--SLRALFRNVARPAVDDADQHCKID 378

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 99.7 bits (249), Expect = 2e-22
 Identities = 75/397 (18%), Positives = 129/397 (32%), Gaps = 82/397 (20%)

Query: 107 SPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFE 166
               + L   + +    +     P    + S  ++  LNL+                   
Sbjct: 38  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLN------------------- 77

Query: 167 YFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYL 226
                             ++  +++ L +    +                        YL
Sbjct: 78  ------DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-----------------------YL 108

Query: 227 PPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA 286
           PP       +F     +  L L  N L  SS+   +F+ +  +  L +  N+L+    + 
Sbjct: 109 PP------HVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 287 FQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS 346
           FQ   SL+ L L+SN L   +      + SL    +  N LS  L+  I          +
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-TLAIPI----------A 206

Query: 347 LEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG 406
           +E L    N I   +      + L +LKL  N+L  T    L +   L  + L  N    
Sbjct: 207 VEELDASHNSINV-VRG-PVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE- 261

Query: 407 VISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQ 466
            I    F  M  L+ L++++N L   L+    P   LK L L+   +  H        ++
Sbjct: 262 KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319

Query: 467 LISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS 503
           L +L + +  I          L      L LS+N   
Sbjct: 320 LENLYLDHNSIVTLKLSTHHTLKN----LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.9 bits (221), Expect = 6e-19
 Identities = 71/336 (21%), Positives = 120/336 (35%), Gaps = 35/336 (10%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
           A      ++ L +  N     P P    ++  L  L L     SS     F +       
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPP 228
           ++ N+NL  +   +     +SL++L LS   LT         S + SL    +    L  
Sbjct: 147 SMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDL-----SLIPSLFHANVSYNLLST 200

Query: 229 INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQ 288
           +            ++E LD S N +  + V   +      +  L L  N+L         
Sbjct: 201 LAI--------PIAVEELDASHNSI--NVVRGPVN---VELTILKLQHNNLT-DTA-WLL 245

Query: 289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLE 348
           +   L  + L+ NELE  +   F  M  L +LY+  N+L   L+   Q +       +L+
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP------TLK 298

Query: 349 GLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVI 408
            L L  N +     +  +F  L+ L L  N +  T+   LS    L+ L+L  N +    
Sbjct: 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TL--KLSTHHTLKNLTLSHNDWDCNS 355

Query: 409 SETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLK 444
               F N++      + D     K+ +        K
Sbjct: 356 LRALFRNVARPA---VDDADQHCKIDYQLEHGLCCK 388

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.6 bits (176), Expect = 3e-13
 Identities = 43/270 (15%), Positives = 89/270 (32%), Gaps = 61/270 (22%)

Query: 546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNC 605
           ++  +            +++               L+N + ++ +N+ +     + L + 
Sbjct: 9   EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 68

Query: 606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLN 665
            ++ +L+L    +  E+ T        +  L +  N      P    ++  + VL L  N
Sbjct: 69  RQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 666 NISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYK 725
           ++S                               +P  I  F     +            
Sbjct: 128 DLS------------------------------SLPRGI--FHNTPKL------------ 143

Query: 726 STLGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDL 784
                   L +S+N L E I ++       L  L LS N LT +    +  + SL   ++
Sbjct: 144 ------TTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193

Query: 785 SRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           S N  S     +L++   +  LD S+NS++
Sbjct: 194 SYNLLS-----TLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 43/257 (16%), Positives = 84/257 (32%), Gaps = 57/257 (22%)

Query: 574 IPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633
           I  ++ +      + +     +          +  +++  + + +  ++P  +  S + +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM-RKLPAALLDSFRQV 71

Query: 634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL 693
            +L L          +   +   IQ L +  N I    P  F N                
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN---------------- 115

Query: 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-TDL 752
                                             +  +  L L  N L  ++P  I  + 
Sbjct: 116 ----------------------------------VPLLTVLVLERNDL-SSLPRGIFHNT 140

Query: 753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNS 812
             LT L++S NNL  +         SL  L LS N  + ++   LSL+  L   ++SYN 
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL 197

Query: 813 LSGKIPLGTQLQSFNAS 829
           LS  + +   ++  +AS
Sbjct: 198 LS-TLAIPIAVEELDAS 213

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 36/164 (21%)

Query: 108 PALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEY 167
             LL   GL  +DLS N+        F+  + +L  L +S       +    +       
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYIS-NNRLVALNLYGQP------ 293

Query: 168 FNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLP 227
                              + +L+ LDLS  +L           Q   L+ L L    + 
Sbjct: 294 -------------------IPTLKVLDLSHNHLLHVERNQ---PQFDRLENLYLDHNSIV 331

Query: 228 PINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILH 271
            +        +   +++ L LS N    +S+     N++R  + 
Sbjct: 332 TLK------LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (276), Expect = 2e-25
 Identities = 67/303 (22%), Positives = 112/303 (36%), Gaps = 30/303 (9%)

Query: 514 SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSG 572
           + D  +      F      +P+ +  L+L KN+   L  D + +F  L  L L  N  S 
Sbjct: 11  AQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 573 KIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQN 632
             P +   L N++TL LR+NRL           S L  LD+ +N +   +   +   L N
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYN 129

Query: 633 LIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ-EKSSNPII 691
           L  L +  N+           L  ++ L L   N++    +  S+   +I        I 
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 692 GLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITD 751
            + +           F+ L  +                  K L++S     + +      
Sbjct: 190 AIRDYS---------FKRLYRL------------------KVLEISHWPYLDTMTPNCLY 222

Query: 752 LVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN 811
            + LT+L+++  NLT +    +  L  L FL+LS N  S    S L  L  L  + L   
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282

Query: 812 SLS 814
            L+
Sbjct: 283 QLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  108 bits (272), Expect = 6e-25
 Identities = 66/376 (17%), Positives = 121/376 (32%), Gaps = 80/376 (21%)

Query: 443 LKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHI 502
            + L L   ++     +   +   L  L+++   +S   P  F +L   L  L L +N +
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRL 92

Query: 503 SGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLS 561
                             I    F G      SN T L++S+NK   L D    +  +L 
Sbjct: 93  K----------------LIPLGVFTGL-----SNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 562 ILNLANNRFSGKIPDSMGF--LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF 619
            L + +N     I     F  L++++ L+L    L      +L +   L VL LR   + 
Sbjct: 132 SLEVGDNDLV-YISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI- 188

Query: 620 GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFS 679
             +       L  L +L +    +   +     +   +  L ++  N++        +  
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH-- 246

Query: 680 MMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN 739
                                                           L ++++L+LS N
Sbjct: 247 ------------------------------------------------LVYLRFLNLSYN 258

Query: 740 KLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLS 798
            +   I   +  +L+ L  + L    L  + P     L  L  L++S N  +    S   
Sbjct: 259 PI-STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 799 LLSGLSVLDLSYNSLS 814
            +  L  L L  N L+
Sbjct: 318 SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 3e-24
 Identities = 69/325 (21%), Positives = 118/325 (36%), Gaps = 47/325 (14%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
                  L  L+L++N         F   L  LR L L                      
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLR--------------------- 88

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLP 227
               SN   +  L   + LS+L  LD+S   +       FQ    L++LK+L +    L 
Sbjct: 89  ----SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLV 141

Query: 228 PINP-SFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA 286
            I+  +F  L +L    E L L   +L  +S+     +    ++ L L   ++      +
Sbjct: 142 YISHRAFSGLNSL----EQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 287 FQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS 346
           F+ +  L++L ++       +        +L  L +    L+      +++L        
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV------Y 249

Query: 347 LEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
           L  L L  N I+  I    L   L L+ ++L    L      +   L  L  L++ GN  
Sbjct: 250 LRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

Query: 405 TGVISETFFSNMSNLQMLFLADNSL 429
           T  + E+ F ++ NL+ L L  N L
Sbjct: 309 T-TLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 3e-24
 Identities = 61/320 (19%), Positives = 109/320 (34%), Gaps = 45/320 (14%)

Query: 114 RGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENS 173
              R LDL KN        EF      L  L L+                          
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFAS-FPHLEELELN-------------------------E 65

Query: 174 NLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLPPINPS 232
           N+ S       ++L +LR L L    L       F     L +L  L +    +  +   
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT---GLSNLTKLDISENKIVILLDY 122

Query: 233 FIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVS 292
              +F    ++++L++ DN L    +    F+   ++  L L   +L     EA  H+  
Sbjct: 123 ---MFQDLYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 293 LRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCL 352
           L +L L    +       F  +  L  L +        ++             +L  L +
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL------NLTSLSI 231

Query: 353 YANDITGPIPD--LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISE 410
              ++T  +P   +   + L+ L L  N ++      L  L +L+ + L G     V+  
Sbjct: 232 THCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEP 289

Query: 411 TFFSNMSNLQMLFLADNSLT 430
             F  ++ L++L ++ N LT
Sbjct: 290 YAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 2e-14
 Identities = 51/263 (19%), Positives = 80/263 (30%), Gaps = 56/263 (21%)

Query: 557 FNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
                 +     RF   +P+  G     + L L  NR+         +   L  L+L +N
Sbjct: 10  SAQDRAVLCHRKRFV-AVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ-LCHLAFIQVLDLSLNNISGKIPKCF 675
            +   V      +L NL  L L+SN     IP      L+ +  LD+S N I   +   F
Sbjct: 67  IV-SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLD 735
            +                                                  L  +K L+
Sbjct: 125 QD--------------------------------------------------LYNLKSLE 134

Query: 736 LSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPS 795
           +  N L        + L  L  L L + NLT +    +  L  L  L L   + +     
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 796 SLSLLSGLSVLDLSYNSLSGKIP 818
           S   L  L VL++S+      + 
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 35/173 (20%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
           +  +L  L+ L++S   +  +  P  +  L+ L  L+++                     
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSIT--------------------- 232

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLP 227
                   +      + HL  LR L+LS   ++           +L  L+ + L    L 
Sbjct: 233 ----HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML---HELLRLQEIQLVGGQLA 285

Query: 228 PINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQ 280
            + P     F     +  L++S N L  +++   +F+   N+  L L  N L 
Sbjct: 286 VVEPY---AFRGLNYLRVLNVSGNQL--TTLEESVFHSVGNLETLILDSNPLA 333

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (258), Expect = 3e-24
 Identities = 61/270 (22%), Positives = 93/270 (34%), Gaps = 24/270 (8%)

Query: 242 SIETLDLSDNHL---PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSL 298
           S   +  +   L   P+         +  +   L+L  N LQ      F  +  L  LSL
Sbjct: 8   SGTEIRCNSKGLTSVPT--------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSL 59

Query: 299 ASNELE--GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
           +SN L   G   +      SL  L L  N +   +S     L        LE L    ++
Sbjct: 60  SSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ------LEHLDFQHSN 112

Query: 357 ITGPIPDLGRFL---SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFF 413
           +   + +   FL   +L  L +   H     N   + L  LE L + GNSF        F
Sbjct: 113 LKQ-MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 414 SNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDIS 473
           + + NL  L L+   L       +     L+ L+++            +  N L  LD S
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

Query: 474 NIGISDTIPDWFWDLSIELFFLNLSNNHIS 503
              I  +           L FLNL+ N  +
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.3 bits (248), Expect = 7e-23
 Identities = 55/267 (20%), Positives = 97/267 (36%), Gaps = 26/267 (9%)

Query: 215 SLKTLVLRSCYLPPINPS-FIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLD 273
           S   L L S  L  +    F  L  L      L LS N L            + ++ +LD
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQL----TKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 274 LGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPK-FFGNMCSLNQLYLPRNKLSGQLS 332
           L FN +  ++   F  +  L  L    + L+       F ++ +L  L +         +
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 333 ELIQNLSSGCTVNSLEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHLNGTINKSLSH 390
            +   LS      SLE L +  N               +L  L L +  L      + + 
Sbjct: 144 GIFNGLS------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF--QLKWLSL 448
           L  L+ L++  N+F   +    +  +++LQ+L  + N +        +  F   L +L+L
Sbjct: 198 LSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNL 255

Query: 449 A------SCKMGPHFPNWLQTQNQLIS 469
                  +C+    F  W++ Q QL+ 
Sbjct: 256 TQNDFACTCEHQS-FLQWIKDQRQLLV 281

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 68/303 (22%), Positives = 105/303 (34%), Gaps = 60/303 (19%)

Query: 519 IDISSNNFDGPIPP-LPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPD 576
           I  +S      +P  +PS++T L L  NK   LP   +     L+ L+L++N  S K   
Sbjct: 12  IRCNSKGLTS-VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 577 SMGF--LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLI 634
           S       +++ L L  N +   + S+     +L  LD + + L       V  SL+NLI
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 635 ILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLA 694
            L +   +           L+ ++VL ++ N+                            
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI------------------- 170

Query: 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-TDLV 753
                       F  L N+                   +LDLS  +L E +       L 
Sbjct: 171 ------------FTELRNL------------------TFLDLSQCQL-EQLSPTAFNSLS 199

Query: 754 GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSL--SLLSGLSVLDLSYN 811
            L  LN+S NN   L       L SL  LD S NH              S L+ L+L+ N
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

Query: 812 SLS 814
             +
Sbjct: 259 DFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 35/247 (14%)

Query: 184 LSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSI 243
              L+ L  L LS   L+      Q      SLK L L    +  ++ +F+ L  L    
Sbjct: 48  FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL---- 103

Query: 244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN-E 302
           E LD   ++L   S +    +L RN+++LD+   H + +    F  + SL +L +A N  
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162

Query: 303 LEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIP 362
            E  +P  F  + +L  L L + +        ++ LS      +   L            
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQ--------LEQLSPT----AFNSLS----------- 199

Query: 363 DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQML 422
                 SL+VL +  N+           L  L+ L    N       +      S+L  L
Sbjct: 200 ------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 423 FLADNSL 429
            L  N  
Sbjct: 254 NLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 53/226 (23%), Positives = 85/226 (37%), Gaps = 17/226 (7%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGS-LSKLRYLNLSCGTPSSKIPHPFRDLSGFEY 167
              KL  L  L LS N               + L+YL+LS       +   F  L   E+
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFLGLEQLEH 105

Query: 168 FNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSC-Y 225
            + ++SNL  +        L +L +LD+S  +     +  F     L SL+ L +    +
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGNSF 162

Query: 226 LPPINP-SFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIP 284
                P  F  L NL      LDLS   L    + P  FN   ++  L++  N+      
Sbjct: 163 QENFLPDIFTELRNL----TFLDLSQCQL--EQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 285 EAFQHMVSLRLLSLASNELEGGIPK--FFGNMCSLNQLYLPRNKLS 328
             ++ + SL++L  + N +     K        SL  L L +N  +
Sbjct: 217 FPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 54/279 (19%), Positives = 98/279 (35%), Gaps = 49/279 (17%)

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGV-ISETFFSNMSNLQMLFLADN 427
           S   L+L  N L    +     L +L  LSL  N  +            ++L+ L L+ N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 428 SLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWD 487
            +   +S +++   QL+ L                  + L  +              F  
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQH--------------SNLKQMSE---------FSVFLS 124

Query: 488 LSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKF 547
           L   L +L++S+ H                     +  F+G    L  +   L ++ N F
Sbjct: 125 LR-NLIYLDISHTHTR----------------VAFNGIFNG----LS-SLEVLKMAGNSF 162

Query: 548 --SGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNC 605
             + LPD +    +L+ L+L+  +     P +   L ++Q L++ +N          K  
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
           + L+VLD   N +       +     +L  L L  N+F 
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 57/260 (21%), Positives = 91/260 (35%), Gaps = 35/260 (13%)

Query: 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
           S + +   +   +  +P   G   +   L L +N+L           ++L  L L  N L
Sbjct: 8   SGTEIRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 619 -FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKC-FS 676
            F    +       +L  L L S N    +      L  ++ LD   +N+        F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDL-SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 677 NFSMMIQ-EKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLD 735
           +   +I  + S        N I         F  L +                  ++ L 
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGI---------FNGLSS------------------LEVLK 156

Query: 736 LSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIP 794
           ++ N   E    +I T+L  LT L+LS+  L  L P     L SL  L++S N+F     
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 795 SSLSLLSGLSVLDLSYNSLS 814
                L+ L VLD S N + 
Sbjct: 217 FPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 53/300 (17%), Positives = 93/300 (31%), Gaps = 72/300 (24%)

Query: 394 LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKM 453
              L L+ N     +    F  ++ L  L L+ N L+ K       +      +      
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKG----CCSQSDFGTT------ 78

Query: 454 GPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLK 513
                        L  LD+S  G+  T+   F  L  +L  L+  ++++           
Sbjct: 79  ------------SLKYLDLSFNGVI-TMSSNFLGLE-QLEHLDFQHSNLKQ--------- 115

Query: 514 SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGK 573
                              +   S FL+L                +L  L++++      
Sbjct: 116 -------------------MSEFSVFLSLR---------------NLIYLDISHTHTRVA 141

Query: 574 IPDSMGFLHNIQTLSLRNNRLNGELPS-SLKNCSKLRVLDLRKNALFGEVPTCVGGSLQN 632
                  L +++ L +  N                L  LDL +  L  ++      SL +
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSS 200

Query: 633 LIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK--SSNPI 690
           L +L +  NNF     F    L  +QVLD SLN+I     +   +F   +     + N  
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 45/197 (22%), Positives = 77/197 (39%), Gaps = 32/197 (16%)

Query: 106 ISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGF 165
           +S   L L  L HLD   ++           SL  L YL++S                  
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS------------------ 134

Query: 166 EYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCY 225
                       V      + LSSL  L ++  +  ++     + ++L +L  L L  C 
Sbjct: 135 -------HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ 186

Query: 226 LPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE 285
           L  ++P+    FN  +S++ L++S N+    S+  + +    ++  LD   NH+  S  +
Sbjct: 187 LEQLSPT---AFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

Query: 286 AFQHMV-SLRLLSLASN 301
             QH   SL  L+L  N
Sbjct: 242 ELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 26/166 (15%)

Query: 657 IQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLT 716
              L+L  N +       F   + +                L           L +  L+
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQL--------------TKL----------SLSSNGLS 65

Query: 717 WKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI-GQ 775
           +KG   +       +KYLDLS N +   +      L  L  L+   +NL  +    +   
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 776 LKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
           L++L +LD+S  H         + LS L VL ++ NS         
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (258), Expect = 5e-24
 Identities = 69/356 (19%), Positives = 122/356 (34%), Gaps = 61/356 (17%)

Query: 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN 301
            +  +  SD  L    V P   +L  +   LDL  N +       F+++ +L  L L +N
Sbjct: 32  HLRVVQCSDLGL--EKV-PK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 302 ELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPI 361
           ++    P  F  +  L +LYL +N+L                                 +
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKE-------------------------------L 115

Query: 362 PDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGV-ISETFFSNMSNLQ 420
           P+     +L+ L++ EN +        + L ++  + L  N      I    F  M  L 
Sbjct: 116 PE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174

Query: 421 MLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDT 480
            + +AD ++T  +     P   L  L L   K+       L+  N L  L +S   IS  
Sbjct: 175 YIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231

Query: 481 IPDWFWDLSIELFFLNLSNN---HISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNS 537
                 +    L  L+L+NN    + G L D   ++    V+ + +N     I  + SN 
Sbjct: 232 DNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQ----VVYLHNN----NISAIGSND 282

Query: 538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR 593
                   K +      L  N +    +  + F          ++    + L N +
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC--------VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 56/322 (17%), Positives = 100/322 (31%), Gaps = 52/322 (16%)

Query: 114 RGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENS 173
                LDL  N        +F   L  L  L L                           
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILIN------------------------- 85

Query: 174 NLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSF 233
           N  S  S    + L  L  L LS   L +  +         +L+ L +    +  +  S 
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKNQLKELPE-----KMPKTLQELRVHENEITKVRKS- 139

Query: 234 IWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVS 292
             +FN    +  ++L  N L SS +    F   + + ++ +   ++  +IP+       S
Sbjct: 140 --VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP---S 193

Query: 293 LRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCL 352
           L  L L  N++          + +L +L L  N +S   +  + N         L  L L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP------HLRELHL 247

Query: 353 YANDITGPIPDLGRFLSLKVLKLGENHLNG------TINKSLSHLFKLETLSLDGNSFTG 406
             N +      L     ++V+ L  N+++             +       +SL  N    
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 407 V-ISETFFSNMSNLQMLFLADN 427
             I  + F  +     + L + 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 88.1 bits (219), Expect = 6e-19
 Identities = 68/360 (18%), Positives = 123/360 (34%), Gaps = 72/360 (20%)

Query: 464 QNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISS 523
           Q  L  +  S++G+   +P    DL  +   L+L NN I+                +I  
Sbjct: 30  QCHLRVVQCSDLGLE-KVPK---DLPPDTALLDLQNNKIT----------------EIKD 69

Query: 524 NNFDGPIPPLPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLH 582
            +F      L  N   L L  NK S + P  +     L  L L+ N+   ++P+      
Sbjct: 70  GDFKN----LK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPK 121

Query: 583 NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL-FGEVPTCVGGSLQNLIILRLKSN 641
            +Q L +  N +     S     +++ V++L  N L    +       ++ L  +R+   
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 642 NFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK-CFSNFSMMIQ-EKSSNPIIGLANEILV 699
           N    IP  L     +  L L  N I+ K+        + + +   S N I  + N  L 
Sbjct: 182 NIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSL- 236

Query: 700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALN 759
                                     +    ++ L L++NKL   +P  + D   +  + 
Sbjct: 237 --------------------------ANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVY 269

Query: 760 LSRNNLTGL------IPPKIGQLKSLDFLDLSRNHFSGNI--PSSLSLLSGLSVLDLSYN 811
           L  NN++ +       P    +  S   + L  N        PS+   +   + + L   
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 58/309 (18%), Positives = 105/309 (33%), Gaps = 64/309 (20%)

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
              +L L  N +    +    +L  L TL L  N  +  IS   F+ +  L+ L+L+ N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQ 111

Query: 429 LTLKLSHDWVPAF---QLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWF 485
           L        +P      L+ L +                N++  +              F
Sbjct: 112 LKE------LPEKMPKTLQELRVHE--------------NEITKVR----------KSVF 141

Query: 486 WDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN 545
             L+ ++  + L  N +                  I +  F G         +++ ++  
Sbjct: 142 NGLN-QMIVVELGTNPLK--------------SSGIENGAFQGM-----KKLSYIRIADT 181

Query: 546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNC 605
             + +P       SL+ L+L  N+ +     S+  L+N+  L L  N ++     SL N 
Sbjct: 182 NITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239

Query: 606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG------NIPFQLCHLAFIQV 659
             LR L L  N L  +VP  +    + + ++ L +NN           P      A    
Sbjct: 240 PHLRELHLNNNKL-VKVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 660 LDLSLNNIS 668
           + L  N + 
Sbjct: 298 VSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 65/299 (21%), Positives = 115/299 (38%), Gaps = 52/299 (17%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
           +P  LP ++  L+L  NK + + D    N  +L  L L NN+ S   P +   L  ++ L
Sbjct: 46  VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105

Query: 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH-GN 646
            L  N+L  ELP  +     L+ L + +N +  +V   V   L  +I++ L +N      
Sbjct: 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 647 IP---FQLCHLAFIQVLDLSLNNISGKIPK-CFSNFSMMIQEKSSNPIIGLA-NEILVVP 701
           I    FQ   +  +  + ++  NI+  IP+    +    + E      + L  N+I  V 
Sbjct: 162 IENGAFQ--GMKKLSYIRIADTNIT-TIPQGLPPS----LTE------LHLDGNKITKVD 208

Query: 702 GYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLS 761
                 + L+N+                    L LS N +       + +   L  L+L+
Sbjct: 209 AA--SLKGLNNL------------------AKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 762 RNNLTGLIPPKIGQLKSLDFLDLSRNHFSG------NIPSSLSLLSGLSVLDLSYNSLS 814
            N L   +P  +   K +  + L  N+ S         P   +  +  S + L  N + 
Sbjct: 249 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 59/283 (20%), Positives = 97/283 (34%), Gaps = 42/283 (14%)

Query: 536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN 595
           +   +  S      +P         ++L+L NN+ +         L N+ TL L NN+++
Sbjct: 32  HLRVVQCSDLGLEKVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLA 655
              P +     KL  L L KN L  E+P       + L  LR+  N            L 
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQL-KELPE---KMPKTLQELRVHENEITKVRKSVFNGLN 145

Query: 656 FIQVLDLSLNNI-SGKIPK-CFSNFSMMIQEKSSNPIIGLA-NEILVVPGYIYYFRYLDN 712
            + V++L  N + S  I    F     +         I +A   I  +P  +     L  
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSY-------IRIADTNITTIPQGL--PPSL-- 194

Query: 713 VLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPP 771
                                L L  NK+   +       L  L  L LS N+++ +   
Sbjct: 195 -------------------TELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 772 KIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
            +     L  L L+ N     +P  L+    + V+ L  N++S
Sbjct: 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 59/263 (22%), Positives = 98/263 (37%), Gaps = 37/263 (14%)

Query: 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
            L ++  ++     K+P       +   L L+NN++        KN   L  L L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 619 FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF 678
             ++       L  L  L L  N     +P ++     +Q L +  N I+ K+ K  S F
Sbjct: 89  -SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRK--SVF 141

Query: 679 SMMIQEKSSNPIIGLAN-EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLS 737
           +            GL    ++           L    L   G E+     +  + Y+ ++
Sbjct: 142 N------------GLNQMIVV----------ELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 738 SNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSL 797
              +   IP+ +     LT L+L  N +T +    +  L +L  L LS N  S     SL
Sbjct: 180 DTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 798 SLLSGLSVLDLSYNSLSGKIPLG 820
           +    L  L L+ N L  K+P G
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGG 258

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.0 bits (185), Expect = 1e-14
 Identities = 50/276 (18%), Positives = 83/276 (30%), Gaps = 47/276 (17%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
           A   L  L  L LSKN     P          L+ L +                      
Sbjct: 95  AFAPLVKLERLYLSKNQLKELPE----KMPKTLQELRVH--------------------- 129

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKS---SDWFQVVSQLHSLKTLVLRSCY 225
                N  +       + L+ +  ++L    L  S   +  FQ    +  L  + +    
Sbjct: 130 ----ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ---GMKKLSYIRIADTN 182

Query: 226 LPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE 285
           +  I         L  S+  L L  N +  + V         N+  L L FN +      
Sbjct: 183 ITTIPQ------GLPPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 286 AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVN 345
           +  +   LR L L +N+L   +P    +   +  +YL  N +S   S             
Sbjct: 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 346 SLEGLCLYANDIT-GPIPD--LGRFLSLKVLKLGEN 378
           S  G+ L++N +    I             ++LG  
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
           + +  S   L E +P+++        L+L  N +T +       LK+L  L L  N  S 
Sbjct: 34  RVVQCSDLGL-EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 792 NIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
             P + + L  L  L LS N L  ++P   
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (255), Expect = 1e-23
 Identities = 62/341 (18%), Positives = 106/341 (31%), Gaps = 69/341 (20%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
            +S     LDL +N +  S +    F   +++  L L  N +     +AF  +  L+ L 
Sbjct: 51  EISPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108

Query: 298 LASN---ELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYA 354
           ++ N   E+   +P       SL +L +  N++      +   L       ++  + +  
Sbjct: 109 ISKNHLVEIPPNLPS------SLVELRIHDNRIRKVPKGVFSGL------RNMNCIEMGG 156

Query: 355 NDITGPIPDLGRF--LSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETF 412
           N +     + G F  L L  L++ E  L   I K L     L  L LD N     I    
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELED 212

Query: 413 FSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDI 472
               S L  L L  N +        +                      L     L  L +
Sbjct: 213 LLRYSKLYRLGLGHNQIR------MIE------------------NGSLSFLPTLRELHL 248

Query: 473 SNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP 532
            N  +S  +P    DL   L  + L  N+I+                 +  N+F      
Sbjct: 249 DNNKLS-RVPAGLPDLK-LLQVVYLHTNNIT----------------KVGVNDFCPVGFG 290

Query: 533 LPSNS-TFLNLSKNKFSGL---PDCWLNFNSLSILNLANNR 569
           +       ++L  N        P  +        +   N +
Sbjct: 291 VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.9 bits (195), Expect = 8e-16
 Identities = 57/289 (19%), Positives = 99/289 (34%), Gaps = 42/289 (14%)

Query: 536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN 595
           +   +  S      +P         ++L+L NN  S    D    L ++  L L NN+++
Sbjct: 34  HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLA 655
                +     KL+ L + KN L  E+P        +L+ LR+  N            L 
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHL-VEIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 656 FIQVLDLSLNNISGKI--PKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNV 713
            +  +++  N +      P  F    +     S   + G+  ++            L   
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL---------PETL--- 195

Query: 714 LLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPK 772
                               L L  NK+ +AI  E       L  L L  N +  +    
Sbjct: 196 ------------------NELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 773 IGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
           +  L +L  L L  N  S  +P+ L  L  L V+ L  N+++ K+ +  
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 47/273 (17%), Positives = 83/273 (30%), Gaps = 42/273 (15%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
           A   LR L+ L +SKN      +P      S L  L +                      
Sbjct: 97  AFSPLRKLQKLYISKNHL--VEIPP--NLPSSLVELRIH--------------------- 131

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPP 228
                N          S L ++  +++    L  S         L  L  L +    L  
Sbjct: 132 ----DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186

Query: 229 INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQ 288
           I        +L  ++  L L  N +   ++          +  L LG N ++     +  
Sbjct: 187 IPK------DLPETLNELHLDHNKI--QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLE 348
            + +LR L L +N+L   +P    ++  L  +YL  N ++         +  G       
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 349 GLCLYANDITGPIPDLGRFL---SLKVLKLGEN 378
           G+ L+ N +         F        ++ G  
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 39/228 (17%), Positives = 65/228 (28%), Gaps = 48/228 (21%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
               LR +  +++  N    S          KL YL +S     + IP            
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS-EAKLTGIP------------ 188

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLP 227
                +L             +L  L L    +     +      +   L  L L    + 
Sbjct: 189 ----KDLP-----------ETLNELHLDHNKIQAIELEDLL---RYSKLYRLGLGHNQIR 230

Query: 228 PINP-SFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA 286
            I   S  +L  L      L L +N L  S V   L +L + +  + L  N++       
Sbjct: 231 MIENGSLSFLPTL----RELHLDNNKL--SRVPAGLPDL-KLLQVVYLHTNNITKVGVND 283

Query: 287 FQHM------VSLRLLSLASNELEGGI--PKFFGNMCSLNQLYLPRNK 326
           F  +           +SL +N +      P  F  +     +     K
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (260), Expect = 4e-23
 Identities = 70/418 (16%), Positives = 126/418 (30%), Gaps = 117/418 (27%)

Query: 393 KLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCK 452
               L++  +  T  + +   ++   +  L + DN+LT                      
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPAH---ITTLVIPDNNLT---------------------- 74

Query: 453 MGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVL 512
                P       +L +L++S   ++ ++P     L  EL   +    H+      L  L
Sbjct: 75  ---SLPALP---PELRTLEVSGNQLT-SLPVLPPGLL-ELSIFSNPLTHLPALPSGLCKL 126

Query: 513 KSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSG 572
                   I  N     +P LP     L++S N+ + LP      + L  L   NN+ + 
Sbjct: 127 -------WIFGNQLTS-LPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT- 174

Query: 573 KIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQN 632
            +P        +Q LS+ +N+L   LP+      KL   + R  +L           L+ 
Sbjct: 175 SLPMLPS---GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALP-----SGLKE 225

Query: 633 LIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIG 692
           LI+    S N   ++P     L   + L +S                        N +  
Sbjct: 226 LIV----SGNRLTSLPVLPSEL---KELMVS-----------------------GNRLTS 255

Query: 693 LANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDL 752
           L                                     +  L +  N+L   +PE +  L
Sbjct: 256 LPMLP-------------------------------SGLLSLSVYRNQLTR-LPESLIHL 283

Query: 753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY 810
              T +NL  N L+      + ++ S          F     S+      L +    +
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.6 bits (248), Expect = 1e-21
 Identities = 73/370 (19%), Positives = 132/370 (35%), Gaps = 73/370 (19%)

Query: 239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSL 298
           L+     L++ ++ L +         L  +I  L +  N+L  S+P        LR L +
Sbjct: 38  LNNGNAVLNVGESGLTTLPD-----CLPAHITTLVIPDNNLT-SLPALPPE---LRTLEV 88

Query: 299 ASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDIT 358
           + N+L   +P     +  L+    P       L  L   L           L ++ N +T
Sbjct: 89  SGNQLTS-LPVLPPGLLELSIFSNPLT----HLPALPSGLCK---------LWIFGNQLT 134

Query: 359 GPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSN 418
             +P L     L+ L + +N L  ++    S L     L    N  T     +     S 
Sbjct: 135 S-LPVL--PPGLQELSVSDNQLA-SLPALPSEL---CKLWAYNNQLT-----SLPMLPSG 182

Query: 419 LQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGIS 478
           LQ L ++DN L                            P      ++L  L   N  ++
Sbjct: 183 LQELSVSDNQLA-------------------------SLPTLP---SELYKLWAYNNRLT 214

Query: 479 DTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNST 538
            ++P     L      L +S N ++      S LK     + +S N     +P LPS   
Sbjct: 215 -SLPALPSGLKE----LIVSGNRLTSLPVLPSELKE----LMVSGNRLTS-LPMLPSGLL 264

Query: 539 FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGEL 598
            L++ +N+ + LP+  ++ +S + +NL  N  S +   ++  + +    S    R +   
Sbjct: 265 SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

Query: 599 PSSLKNCSKL 608
            S+ +    L
Sbjct: 325 ASAPRETRAL 334

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.6 bits (248), Expect = 1e-21
 Identities = 53/297 (17%), Positives = 92/297 (30%), Gaps = 85/297 (28%)

Query: 533 LPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNN 592
           L + +  LN+ ++  + LPDC      ++ L + +N  +  +P        ++TL +  N
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGN 91

Query: 593 RLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLC 652
           +L   LP       +L +       L              L  L +  N    ++P    
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL--------PALPSGLCKLWIFGNQLT-SLPVLPP 141

Query: 653 HLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDN 712
            L   Q L +S                        N +  L                   
Sbjct: 142 GL---QELSVS-----------------------DNQLASLPALP--------------- 160

Query: 713 VLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPK 772
                             +  L   +N+L  ++P   +   GL  L++S N L  L P  
Sbjct: 161 ----------------SELCKLWAYNNQL-TSLPMLPS---GLQELSVSDNQLASL-PTL 199

Query: 773 IGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNAS 829
             +L  L   +              +L SGL  L +S N L+    L ++L+    S
Sbjct: 200 PSELYKLWAYNNRLTSLP-------ALPSGLKELIVSGNRLTSLPVLPSELKELMVS 249

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 58/318 (18%), Positives = 105/318 (33%), Gaps = 59/318 (18%)

Query: 113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVEN 172
             G   L++ ++    + +P+ +   + +  L +      + +P             V  
Sbjct: 39  NNGNAVLNVGESGL--TTLPDCLP--AHITTLVIPD-NNLTSLP---ALPPELRTLEVSG 90

Query: 173 SNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPS 232
           + L S+  L     L  L        +L          +    L  L +    L  +   
Sbjct: 91  NQLTSLPVL--PPGLLELSIFSNPLTHLP---------ALPSGLCKLWIFGNQLTSLPVL 139

Query: 233 FIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVS 292
                     ++ L +SDN L  +S+      L      L    N L  S+P        
Sbjct: 140 P-------PGLQELSVSDNQL--ASLPALPSELC----KLWAYNNQLT-SLPMLPS---G 182

Query: 293 LRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCL 352
           L+ LS++ N+L   +P        L +L+   N+L+  L  L   L           L +
Sbjct: 183 LQELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSGLKE---------LIV 228

Query: 353 YANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETF 412
             N +T           LK L +  N L  ++    S    L +LS+  N  T +     
Sbjct: 229 SGNRLTSLPVLPS---ELKELMVSGNRLT-SLPMLPS---GLLSLSVYRNQLTRLPES-- 279

Query: 413 FSNMSNLQMLFLADNSLT 430
             ++S+   + L  N L+
Sbjct: 280 LIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 78.4 bits (193), Expect = 5e-15
 Identities = 58/338 (17%), Positives = 98/338 (28%), Gaps = 79/338 (23%)

Query: 113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVEN 172
              LR L++S N    + +P     L +L   +                           
Sbjct: 80  PPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNPL------------------------ 113

Query: 173 SNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPS 232
                   L  L   S L  L +    LT       +      L+ L +    L  +   
Sbjct: 114 ------THLPAL--PSGLCKLWIFGNQLT------SLPVLPPGLQELSVSDNQLASLPAL 159

Query: 233 FIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVS 292
                   + +  L   +N L S      L  L   +  L +  N L  S+P     +  
Sbjct: 160 P-------SELCKLWAYNNQLTS------LPMLPSGLQELSVSDNQLA-SLPTLPSELYK 205

Query: 293 LRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCL 352
           L   +     L             L +L +  N+L+  L  L   L           L +
Sbjct: 206 LWAYNNRLTSLPALPS-------GLKELIVSGNRLT-SLPVLPSELKE---------LMV 248

Query: 353 YANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETF 412
             N +T  +P L     L  L +  N L   + +SL HL    T++L+GN  +    +  
Sbjct: 249 SGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ-- 302

Query: 413 FSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLAS 450
              +  +         +            + + L LA+
Sbjct: 303 --ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (252), Expect = 1e-22
 Identities = 61/255 (23%), Positives = 97/255 (38%), Gaps = 38/255 (14%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
            +ST+   L+L +N +    +    F   R++  L L  NH++     AF  + +L  L 
Sbjct: 61  GISTNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118

Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLS----------GQLSEL-------IQNLSS 340
           L  N L       F  +  L +L+L  N +             L  L       +  +S 
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 341 GCTVN--SLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLS 398
           G      +L  L L   ++   IP+L   + L  L L  NHL+     S   L  L+ L 
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 399 LDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQ----LKWLSLAS---- 450
           +  +    VI    F N+ +L  + LA N+LT  L HD    F     L+ + L      
Sbjct: 238 MIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHD---LFTPLHHLERIHLHHNPWN 292

Query: 451 --CKMGPHFPNWLQT 463
             C +      W++ 
Sbjct: 293 CNCDILW-LSWWIKD 306

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.0 bits (221), Expect = 9e-19
 Identities = 60/297 (20%), Positives = 103/297 (34%), Gaps = 55/297 (18%)

Query: 240 STSIETLDLSDNHL---PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL 296
           S     +     +L   P          +S N   L+L  N +Q     +F+H+  L +L
Sbjct: 42  SNQFSKVICVRKNLREVPD--------GISTNTRLLNLHENQIQIIKVNSFKHLRHLEIL 93

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
            L+ N +       F  + +LN L L  N+L+   +     LS       L+ L L  N 
Sbjct: 94  QLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS------KLKELWLRNNP 147

Query: 357 ITGPIPDLGRFL-SLKVLKLGE-NHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFS 414
           I          + SL+ L LGE   L+     +   L  L  L+L   +   + +    +
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN---LT 204

Query: 415 NMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISN 474
            +  L  L L+ N L+       +                   P   Q    L  L +  
Sbjct: 205 PLIKLDELDLSGNHLS------AIR------------------PGSFQGLMHLQKLWMIQ 240

Query: 475 IGISDTIPDWFWDLSIELFFLNLSNNHIS----GKLPDLSVLKSDDIVIDISSNNFD 527
             I     + F +L   L  +NL++N+++         L  L+     I +  N ++
Sbjct: 241 SQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHLE----RIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 64/280 (22%), Positives = 103/280 (36%), Gaps = 52/280 (18%)

Query: 367 FLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD 426
             + ++L L EN +      S  HL  LE L L  N     I    F+ ++NL  L L D
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 427 NSLTLKLSHDW-VPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWF 485
           N LT  + +   V   +LK L L +              N + S+              F
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRN--------------NPIESIP----------SYAF 156

Query: 486 WDLSIELFFLNLS-NNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSK 544
             +   L  L+L     +S                 IS   F+G    L  N  +LNL+ 
Sbjct: 157 NRIP-SLRRLDLGELKRLS----------------YISEGAFEG----LS-NLRYLNLAM 194

Query: 545 NKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKN 604
                +P+       L  L+L+ N  S   P S   L ++Q L +  +++     ++  N
Sbjct: 195 CNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 605 CSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
              L  ++L  N L   +P  +   L +L  + L  N ++
Sbjct: 254 LQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.0 bits (213), Expect = 9e-18
 Identities = 58/290 (20%), Positives = 101/290 (34%), Gaps = 62/290 (21%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
           +P  + +N+  LNL +N+   +      +   L IL L+ N        +   L N+ TL
Sbjct: 58  VPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117

Query: 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI 647
            L +NRL      +    SKL+ L LR N +   +P+     + +L  L L        I
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 648 P---FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYI 704
               F+   L+ ++ L+L++ N+                                    I
Sbjct: 177 SEGAFE--GLSNLRYLNLAMCNLR----------------------------------EI 200

Query: 705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRN 763
                L                    +  LDLS N L  AI       L+ L  L + ++
Sbjct: 201 PNLTPLIK------------------LDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQS 241

Query: 764 NLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813
            +  +       L+SL  ++L+ N+ +       + L  L  + L +N  
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.6 bits (199), Expect = 6e-16
 Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 34/266 (12%)

Query: 557 FNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
            N  S +         ++PD  G   N + L+L  N++     +S K+   L +L L +N
Sbjct: 42  SNQFSKVICVRKNLR-EVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ-LCHLAFIQVLDLSLNNISGKIPKCF 675
            +   +       L NL  L L  N     IP     +L+ ++ L L  N I   IP   
Sbjct: 99  HI-RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPS-- 153

Query: 676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLD 735
             F+ +   +  +  +G    +  +      F  L N+                  +YL+
Sbjct: 154 YAFNRIPSLRRLD--LGELKRLSYISEGA--FEGLSNL------------------RYLN 191

Query: 736 LSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPS 795
           L+   L   IP  +T L+ L  L+LS N+L+ + P     L  L  L + ++       +
Sbjct: 192 LAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249

Query: 796 SLSLLSGLSVLDLSYNSLSGKIPLGT 821
           +   L  L  ++L++N+L+  +P   
Sbjct: 250 AFDNLQSLVEINLAHNNLT-LLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 14/219 (6%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
           +   LR L  L LS+N      +  F G L+ L  L L     ++     F  LS  +  
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCIN-LTK-SSDWFQVVSQLHSLKTLVLRSCYL 226
            + N+ + S+ S    + + SLR LDL  +  L+  S   F+    L +L+ L L  C L
Sbjct: 142 WLRNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMCNL 197

Query: 227 PPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA 286
             I P+   L  L    + LDLS NHL  S++ P  F    ++  L +  + +Q     A
Sbjct: 198 REI-PNLTPLIKL----DELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 287 FQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
           F ++ SL  ++LA N L       F  +  L +++L  N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 38/171 (22%), Positives = 57/171 (33%), Gaps = 30/171 (17%)

Query: 657 IQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLT 716
            ++L+L  N I       F +   +   + S       N I  +      F  L N+   
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSR------NHIRTIEIGA--FNGLANL--- 114

Query: 717 WKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQ 775
                            L+L  N+L   IP      L  L  L L  N +  +      +
Sbjct: 115 ---------------NTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 776 LKSLDFLDLSRNHFSGNIPS-SLSLLSGLSVLDLSYNSLSGKIPLGTQLQS 825
           + SL  LDL        I   +   LS L  L+L+  +L  +IP  T L  
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIK 208

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.4 bits (248), Expect = 5e-22
 Identities = 57/258 (22%), Positives = 98/258 (37%), Gaps = 32/258 (12%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
            + ++   L+L +N++    +    F    ++  L LG N ++     AF  + SL  L 
Sbjct: 72  GIPSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129

Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLS----------GQLSEL-------IQNLSS 340
           L  N L       F  +  L +L+L  N +             L  L       ++ +S 
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 341 GCTVN--SLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLS 398
           G      +L+ L L   +I   +P+L   + L+ L++  NH       S   L  L+ L 
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 399 LDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF-QLKWLSLAS------C 451
           +  +  + +I    F  +++L  L LA N+L+  L HD       L  L L        C
Sbjct: 249 VMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNCDC 306

Query: 452 KMGPHFPNWLQTQNQLIS 469
            +      WL+      S
Sbjct: 307 DILW-LAWWLREYIPTNS 323

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 62/264 (23%), Positives = 103/264 (39%), Gaps = 19/264 (7%)

Query: 240 STSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLA 299
           S     +  +   L  S V P    +  N  +L+L  N++Q    + F+H+  L +L L 
Sbjct: 53  SNQFSKVVCTRRGL--SEV-PQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 300 SNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG 359
            N +       F  + SLN L L  N L+   S   + LS       L  L L  N I  
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS------KLRELWLRNNPIES 161

Query: 360 PIPD--LGRFLSLKVLKLGE-NHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNM 416
            IP     R  SL  L LGE   L      +   LF L+ L+L   +   +      + +
Sbjct: 162 -IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPL 217

Query: 417 SNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIG 476
             L+ L ++ N         +     LK L + + ++     N       L+ L++++  
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277

Query: 477 ISDTIPDWFWDLSIELFFLNLSNN 500
           +S ++P   +     L  L+L +N
Sbjct: 278 LS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 60/279 (21%), Positives = 102/279 (36%), Gaps = 50/279 (17%)

Query: 367 FLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD 426
             + + L L EN++      +  HL  LE L L  NS    I    F+ +++L  L L D
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 427 NSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFW 486
           N LT+      +P                      +  ++L  L + N  I       F 
Sbjct: 133 NWLTV------IP------------------SGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 487 DLSIELFFLNLSN-NHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN 545
            +   L  L+L     +                  IS   F+G    L  N  +LNL   
Sbjct: 169 RVP-SLMRLDLGELKKLE----------------YISEGAFEG----LF-NLKYLNLGMC 206

Query: 546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNC 605
               +P+       L  L ++ N F    P S   L +++ L + N++++    ++    
Sbjct: 207 NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
           + L  L+L  N L   +P  +   L+ L+ L L  N ++
Sbjct: 266 ASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 87.1 bits (216), Expect = 4e-18
 Identities = 57/287 (19%), Positives = 97/287 (33%), Gaps = 56/287 (19%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
           +P  +PSN+ +LNL +N    +      + + L +L L  N        +   L ++ TL
Sbjct: 69  VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128

Query: 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI 647
            L +N L      + +  SKLR L LR N +   +P+     + +L+ L L        I
Sbjct: 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 648 PFQ-LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYY 706
                  L  ++ L+L + NI                                    +  
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK----------------------------------DMPN 213

Query: 707 FRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLT 766
              L                    ++ L++S N   E  P     L  L  L +  + ++
Sbjct: 214 LTPLVG------------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 767 GLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813
            +       L SL  L+L+ N+ S       + L  L  L L +N  
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 62/325 (19%), Positives = 102/325 (31%), Gaps = 78/325 (24%)

Query: 464 QNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISS 523
            NQ   +  +  G+S  +P     +     +LNL  N+I                  I +
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQ----------------MIQA 92

Query: 524 NNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLH 582
           + F      L  +   L L +N    +    +    SL+ L L +N  +     +  +L 
Sbjct: 93  DTFRH----LH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS 147

Query: 583 NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNN 642
            ++ L LRNN +      +      L  LDL +      +       L NL  L L   N
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 643 FHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPG 702
              ++P  L  L  ++ L++S N+     P  F                           
Sbjct: 208 IK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHG------------------------- 240

Query: 703 YIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSR 762
                                    L  +K L + ++++          L  L  LNL+ 
Sbjct: 241 -------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 763 NNLTGLIPPKIGQLKSLDFLDLSRN 787
           NNL+ L       L+ L  L L  N
Sbjct: 276 NNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.6 bits (199), Expect = 6e-16
 Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 34/266 (12%)

Query: 557 FNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
            N  S +       S ++P   G   N + L+L  N +      + ++   L VL L +N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ-LCHLAFIQVLDLSLNNISGKIPKCF 675
           ++  ++       L +L  L L  N     IP     +L+ ++ L L  N I       F
Sbjct: 110 SI-RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLD 735
           +    +++            ++  +      F  L N+                  KYL+
Sbjct: 168 NRVPSLMRLDLGE-----LKKLEYISEGA--FEGLFNL------------------KYLN 202

Query: 736 LSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPS 795
           L    + + +P  +T LVGL  L +S N+   + P     L SL  L +  +  S    +
Sbjct: 203 LGMCNI-KDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

Query: 796 SLSLLSGLSVLDLSYNSLSGKIPLGT 821
           +   L+ L  L+L++N+LS  +P   
Sbjct: 261 AFDGLASLVELNLAHNNLS-SLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 4e-15
 Identities = 58/247 (23%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 114 RGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENS 173
              R+L+L +N+        F   L  L  L L   +        F  L+      + ++
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 174 NLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSC----YLPP 228
            L  + S     +LS LR L L    +    S  F    ++ SL  L L       Y+  
Sbjct: 134 WLTVIPS-GAFEYLSKLRELWLRNNPIESIPSYAFN---RVPSLMRLDLGELKKLEYISE 189

Query: 229 INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQ 288
              +F  LFNL    + L+L   ++      P L  L   +  L++  NH     P +F 
Sbjct: 190 --GAFEGLFNL----KYLNLGMCNI---KDMPNLTPLV-GLEELEMSGNHFPEIRPGSFH 239

Query: 289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLE 348
            + SL+ L + ++++       F  + SL +L L  N LS    +L   L        L 
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR------YLV 293

Query: 349 GLCLYAN 355
            L L+ N
Sbjct: 294 ELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 57/223 (25%), Positives = 87/223 (39%), Gaps = 22/223 (9%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKI----PHPFRDLSG 164
               L  L  L L +N      V  F G L+ L  L L      + +       F  LS 
Sbjct: 94  TFRHLHHLEVLQLGRNSIRQIEVGAFNG-LASLNTLELF----DNWLTVIPSGAFEYLSK 148

Query: 165 FEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCIN-LTK-SSDWFQVVSQLHSLKTLVLR 222
                + N+ + S+ S    + + SL  LDL  +  L   S   F+    L +LK L L 
Sbjct: 149 LRELWLRNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLG 204

Query: 223 SCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGS 282
            C +  + P+   L  L    E L++S NH     + P  F+   ++  L +  + +   
Sbjct: 205 MCNIKDM-PNLTPLVGL----EELEMSGNHF--PEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 283 IPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
              AF  + SL  L+LA N L       F  +  L +L+L  N
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 53/275 (19%), Positives = 89/275 (32%), Gaps = 72/275 (26%)

Query: 394 LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKM 453
              L+L  N+   +I    F ++ +L++L L  NS+       +     L  L L     
Sbjct: 77  TRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD--- 132

Query: 454 GPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLK 513
                      N L  +              F  LS +L  L L NN I           
Sbjct: 133 -----------NWLTVIP----------SGAFEYLS-KLRELWLRNNPIE---------- 160

Query: 514 SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGK 573
                  I S  F+     +P +   L+L                 L    ++   F G 
Sbjct: 161 ------SIPSYAFNR----VP-SLMRLDLG------------ELKKLE--YISEGAFEG- 194

Query: 574 IPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL 633
                  L N++ L+L    +  ++P+ L     L  L++  N    E+       L +L
Sbjct: 195 -------LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHF-PEIRPGSFHGLSSL 244

Query: 634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668
             L + ++            LA +  L+L+ NN+S
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  100 bits (250), Expect = 5e-22
 Identities = 93/536 (17%), Positives = 162/536 (30%), Gaps = 85/536 (15%)

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
           +L      L L  N +          +  LR+L L+ N +       F     L  L + 
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108

Query: 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT 383
            N+L        QN+S     + L  L L  ND    +P    F +L             
Sbjct: 109 HNRL--------QNISCCPMAS-LRHLDLSFNDFDV-LPVCKEFGNLT------------ 146

Query: 384 INKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQL 443
                    KL  L L    F  +          +  +L L    +      + +     
Sbjct: 147 ---------KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK-GGETESLQIPNT 196

Query: 444 KWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS 503
             L L              + N L  L +SNI ++D           EL       N   
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256

Query: 504 GKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD------CWLNF 557
             +       +    + +    +  P+        +LN+     +   D           
Sbjct: 257 QHIE-----TTWKCSVKLFQFFWPRPV-------EYLNIYNLTITERIDREEFTYSETAL 304

Query: 558 NSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA 617
            SL I ++ N  F             +    L  +           + S    L+  +N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 618 LFGEVPTCVGGSLQNLIILRLKSNNFH--GNIPFQLCHLAFIQVLDLSLNNISGKIPKCF 675
              +       +L+ L  L L+ N       +     +++ ++ LD+SLN+++       
Sbjct: 365 F-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 676 SNFSMMIQEK--SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKY 733
             ++  I     SSN + G     L                                VK 
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLPPK-----------------------------VKV 454

Query: 734 LDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
           LDL +N++  +IP+++T L  L  LN++ N L  +      +L SL ++ L  N +
Sbjct: 455 LDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 9e-22
 Identities = 82/473 (17%), Positives = 167/473 (35%), Gaps = 61/473 (12%)

Query: 188 SSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLD 247
              + L LS  ++++       +S L  L+ L L    +  ++     +F  +  +E LD
Sbjct: 52  PRTKALSLSQNSISELRM--PDISFLSELRVLRLSHNRIRSLDFH---VFLFNQDLEYLD 106

Query: 248 LSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA--FQHMVSLRLLSLASNEL-- 303
           +S N L + S    + +L     HLDL FN     +P    F ++  L  L L++ +   
Sbjct: 107 VSHNRLQNISCC-PMASLR----HLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ 160

Query: 304 ------------------------EGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLS 339
                                    G          ++  L    N L      +  N  
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220

Query: 340 SGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFK---LET 396
               +++++        +   + +L R  +L  + L         +  L   F    +E 
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 397 LSLDGNSFTGVISETFFSN----MSNLQMLFLADNSLTLKLS--HDWVPAFQLKWLSLAS 450
           L++   + T  I    F+     + +L +  + +          +       +K LS++ 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 451 CKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHI------SG 504
                       + +    L+ +    +D++      L   L  L L  N +      + 
Sbjct: 341 TPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVAL 397

Query: 505 KLPDLSVLKSDDIVID-ISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSIL 563
              ++S L++ D+ ++ ++S+ +D        +   LNLS N  +G     L    + +L
Sbjct: 398 MTKNMSSLETLDVSLNSLNSHAYDRTCA-WAESILVLNLSSNMLTGSVFRCLPPK-VKVL 455

Query: 564 NLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
           +L NNR    IP  +  L  +Q L++ +N+L           + L+ + L  N
Sbjct: 456 DLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.2 bits (216), Expect = 7e-18
 Identities = 81/490 (16%), Positives = 159/490 (32%), Gaps = 65/490 (13%)

Query: 112 KLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPH-PFRDLSGFEYFNV 170
            L  LR L LS N         F+     L YL++S     +++ +     ++   + ++
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVS----HNRLQNISCCPMASLRHLDL 128

Query: 171 ENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLH-SLKTLVLRSCYLPPI 229
             ++   +   +   +L+ L  L LS     +       V+ LH S   L L S ++   
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSYHIKGG 186

Query: 230 NPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSR-NILHLDLGFNHLQGSIPEAFQ 288
               + + N  T++  L    N L S  V   +  L    + ++ L   + Q  +    +
Sbjct: 187 ETESLQIPN--TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG-QLSELIQNLSSGCTVNSL 347
                 LL++    +E                 +    +    ++E I       +  +L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 348 EGLC---LYANDITGPIPDLGRFLS-LKVLKLGENHLNGTINKSLSHLFKLETLSLDGNS 403
           + L    +           L    + + +  L  +                  L+   N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 404 FTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQT 463
           FT  + +   S +  LQ L L  N L                 +              + 
Sbjct: 365 FTDSVFQG-CSTLKRLQTLILQRNGLK----------------NF------FKVALMTKN 401

Query: 464 QNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISS 523
            + L +LD+S   ++    D     +  +  LNLS+N ++                    
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-------------------- 441

Query: 524 NNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSM-GFLH 582
                    LP     L+L  N+   +P    +  +L  LN+A+N+    +PD +   L 
Sbjct: 442 ---GSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT 497

Query: 583 NIQTLSLRNN 592
           ++Q + L +N
Sbjct: 498 SLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 79.5 bits (196), Expect = 2e-15
 Identities = 75/467 (16%), Positives = 143/467 (30%), Gaps = 56/467 (11%)

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
             K L L +N ++      +S L +L  L L  N     +    F    +L+ L ++ N 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 429 LTLKLSHDWVPAFQLKWLS---LASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWF 485
           L   +S   + + +   LS        +   F N      +L  L +S            
Sbjct: 112 LQ-NISCCPMASLRHLDLSFNDFDVLPVCKEFGNL----TKLTFLGLSAAKFRQLDLLPV 166

Query: 486 WDLSIELFFLNLSNNHIS-GKLPDLSVLKSDDIVIDISSNN-FDGPIPPLPSNSTFLNLS 543
             L +    L+L + HI  G+   L +  +  + +    N+ F   +    +    L LS
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 544 KNKFSGLPDCWL------NFNSLSILNLANNRFSGKIPDSMGFLHN-----IQTLSLRNN 592
             K +      L           ++LN+           S+          ++ L++ N 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 593 RLNG-----ELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI 647
            +       E   S      L +  ++           +      + I  L  ++     
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIH 345

Query: 648 PFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYF 707
                  +    L+ + N  +  + +  S    +             N +          
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR------NGLKNFFKVALMT 399

Query: 708 RYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG-LTALNLSRNNLT 766
                               +  ++ LD+S N L     +        +  LNLS N LT
Sbjct: 400 ------------------KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

Query: 767 GLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813
           G +   +     +  LDL  N    +IP  ++ L  L  L+++ N L
Sbjct: 442 GSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.1 bits (182), Expect = 8e-14
 Identities = 61/350 (17%), Positives = 116/350 (33%), Gaps = 46/350 (13%)

Query: 495 LNLSNNHIS-------GKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNS-------TFL 540
           L+LS N IS         L +L VL        +S N     I  L  +         +L
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVL-------RLSHNR----IRSLDFHVFLFNQDLEYL 105

Query: 541 NLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLSLRNNRL-NGE 597
           ++S N+   +  C +   SL  L+L+ N F   +P    F  L  +  L L   +    +
Sbjct: 106 DVSHNRLQNISCCPMA--SLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLD 162

Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ-LCHLAF 656
           L           +LDL    + G     +      ++ L    N+         +  L  
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222

Query: 657 IQVLDLSLNNISGKIPKCF----------SNFSMMIQEKSSNPIIGLANEILVVPGYIYY 706
           +Q+ ++ LN+ + +    F           N ++   E +    + L       P  + Y
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ--FFWPRPVEY 280

Query: 707 FRYLDNVL--LTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNN 764
               +  +     +      ++ L  +    + +     +     +    +    LS ++
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 765 LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
              +         S  FL+ ++N F+ ++    S L  L  L L  N L 
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790
            K L LS N + E    +I+ L  L  L LS N +  L        + L++LD+S N   
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 791 GNIPSSLSLLSGLSVLDLSYNSLS 814
            NI      ++ L  LDLS+N   
Sbjct: 114 -NISC--CPMASLRHLDLSFNDFD 134

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 56/235 (23%), Positives = 90/235 (38%), Gaps = 22/235 (9%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
            +  + + + L  N +  S V    F   RN+  L L  N L      AF  +  L  L 
Sbjct: 29  GIPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86

Query: 298 LASNELEGGIPK-FFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
           L+ N     +    F  +  L+ L+L R  L      L + L+      +L+ L L  N 
Sbjct: 87  LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA------ALQYLYLQDNA 140

Query: 357 ITGPIPD--LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFS 414
           +   +PD       +L  L L  N ++    ++   L  L+ L L  N     +    F 
Sbjct: 141 LQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFR 198

Query: 415 NMSNLQMLFLADNSLTLKLSHD-WVPAFQLKWLSLA------SCKMGPHFPNWLQ 462
           ++  L  L+L  N+L+  L  +   P   L++L L        C+  P    WLQ
Sbjct: 199 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQ 251

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 52/263 (19%), Positives = 87/263 (33%), Gaps = 58/263 (22%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
           +P  +P+ S  + L  N+ S +P   +    +L+IL L +N  +     +   L  ++ L
Sbjct: 26  VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85

Query: 588 SLRNNRLNGELPSS-LKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN 646
            L +N     +  +      +L  L L +  L  E+   +   L  L  L L+ N     
Sbjct: 86  DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 647 IPFQ-LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIY 705
           +P      L  +  L L  N IS    + F                              
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRG---------------------------- 175

Query: 706 YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNN 764
                                 L  +  L L  N++   +      DL  L  L L  NN
Sbjct: 176 ----------------------LHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANN 212

Query: 765 LTGLIPPKIGQLKSLDFLDLSRN 787
           L+ L    +  L++L +L L+ N
Sbjct: 213 LSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 54/275 (19%), Positives = 82/275 (29%), Gaps = 72/275 (26%)

Query: 346 SLEGLCLYANDITG-PIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
           + + + L+ N I+  P        +L +L L  N L      + + L  LE L L  N+ 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 405 TGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQ 464
              +    F  +  L  L L    L                                   
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ---------------------------------- 118

Query: 465 NQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSN 524
                L           P  F  L+  L +L L +N +                  +  +
Sbjct: 119 ----ELG----------PGLFRGLA-ALQYLYLQDNALQ----------------ALPDD 147

Query: 525 NFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGFLHN 583
            F         N T L L  N+ S +P+      +SL  L L  NR +   P +   L  
Sbjct: 148 TFRD-----LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 584 IQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
           + TL L  N L+     +L     L+ L L  N  
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 172 NSNLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRS-CYLPPI 229
           + N  S           +L  L L    L +  +  F     L  L+ L L     L  +
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT---GLALLEQLDLSDNAQLRSV 96

Query: 230 NPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQ 288
           +P+    F+    + TL L    L    + P LF     + +L L  N LQ ++P+  F+
Sbjct: 97  DPA---TFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLE 348
            + +L  L L  N +     + F  + SL++L L +N+++       ++L        L 
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG------RLM 204

Query: 349 GLCLYANDITGPIPD--LGRFLSLKVLKLGENHLN 381
            L L+AN+++  +P   L    +L+ L+L +N   
Sbjct: 205 TLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 50/218 (22%), Positives = 73/218 (33%), Gaps = 34/218 (15%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
           +    R L  L L  N         F G L+ L  L+LS                     
Sbjct: 51  SFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLS--------------------- 88

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLP 227
             +N+ L SV        L  L  L L    L +     F+    L +L+ L L+   L 
Sbjct: 89  --DNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFR---GLAALQYLYLQDNALQ 142

Query: 228 PINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAF 287
            +       F    ++  L L  N +  SSV    F    ++  L L  N +    P AF
Sbjct: 143 ALPDD---TFRDLGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 288 QHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
           + +  L  L L +N L     +    + +L  L L  N
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 53/240 (22%), Positives = 79/240 (32%), Gaps = 58/240 (24%)

Query: 579 GFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRL 638
           G     Q + L  NR++    +S + C  L +L L  N L   +       L  L  L L
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDL 87

Query: 639 KSNNFHGNIP---FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLAN 695
             N    ++    F    L  +  L L                                 
Sbjct: 88  SDNAQLRSVDPATFH--GLGRLHTLHLD------------------------------RC 115

Query: 696 EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-TDLVG 754
            +  +   +  FR L  +                  +YL L  N L +A+P++   DL  
Sbjct: 116 GLQELGPGL--FRGLAAL------------------QYLYLQDNAL-QALPDDTFRDLGN 154

Query: 755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           LT L L  N ++ +       L SLD L L +N  +   P +   L  L  L L  N+LS
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 39/193 (20%), Positives = 61/193 (31%), Gaps = 24/193 (12%)

Query: 487 DLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNK 546
            +      + L  N IS                 + + +F         N T L L  N 
Sbjct: 29  GIPAASQRIFLHGNRIS----------------HVPAASFRAC-----RNLTILWLHSNV 67

Query: 547 FSGLPDCWL-NFNSLSILNLANNRFSGKIPDSM-GFLHNIQTLSLRNNRLNGELPSSLKN 604
            + +          L  L+L++N     +  +    L  + TL L    L    P   + 
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 605 CSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSL 664
            + L+ L L+ NAL   +P      L NL  L L  N            L  +  L L  
Sbjct: 128 LAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 665 NNISGKIPKCFSN 677
           N ++   P  F +
Sbjct: 187 NRVAHVHPHAFRD 199

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
           + + L  N++             LT L L  N L  +       L  L+ LDLS N    
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94

Query: 792 NIPSS-LSLLSGLSVLDLSYNSLSGKIPLGT 821
           ++  +    L  L  L L    L  ++  G 
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.1 bits (123), Expect = 7e-07
 Identities = 26/98 (26%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDL 784
                +  L L SN L        T L  L  L+LS N     + P     L  L  L L
Sbjct: 53  RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

Query: 785 SRNHFSGNIPS-SLSLLSGLSVLDLSYNSLSGKIPLGT 821
            R      +       L+ L  L L  N+L   +P  T
Sbjct: 113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 734 LDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI 793
                  L +A+P  I        + L  N ++ +        ++L  L L  N  +   
Sbjct: 16  TSCPQQGL-QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 794 PSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
            ++ + L+ L  LDLS N+    +   T
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPAT 100

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.3 bits (227), Expect = 7e-20
 Identities = 63/298 (21%), Positives = 110/298 (36%), Gaps = 40/298 (13%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLL 296
            L+ ++++LDLS+N +  + +         N+  L L  N +  +I E +F  + SL  L
Sbjct: 49  GLTEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHL 105

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
            L+ N L      +F  + SL  L L  N         +   S    +  L+ L +   D
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-----LGETSLFSHLTKLQILRVGNMD 160

Query: 357 ITGPIPD--LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFS 414
               I          L+ L++  + L     KSL  +  +  L L       ++ E F  
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD 219

Query: 415 NMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISN 474
             S+++ L L D  L           F    LS           N L  +    ++ I++
Sbjct: 220 VTSSVECLELRDTDLD---------TFHFSELS-------TGETNSLIKKFTFRNVKITD 263

Query: 475 IGISDTIPDWFWDLSIELFFLNLSNNHISGKLPD-----LSVLKSDDIVIDISSNNFD 527
             +   +      +S  L  L  S N +   +PD     L+ L+     I + +N +D
Sbjct: 264 ESLF-QVMKLLNQIS-GLLELEFSRNQLKS-VPDGIFDRLTSLQK----IWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 59/285 (20%), Positives = 107/285 (37%), Gaps = 33/285 (11%)

Query: 184 LSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTS 242
           L    +L+ L L+   +     D F   S L SL+ L L   YL  ++ S    F   +S
Sbjct: 72  LQRCVNLQALVLTSNGINTIEEDSF---SSLGSLEHLDLSYNYLSNLSSS---WFKPLSS 125

Query: 243 IETLDLSDNHLPSSSVYPW-LFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLLSLAS 300
           +  L+L  N     ++    LF+    +  L +G       I    F  +  L  L + +
Sbjct: 126 LTFLNLLGNPY--KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 301 NELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI--- 357
           ++L+   PK   ++ +++ L L   +    L   +   S      S+E L L   D+   
Sbjct: 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS------SVECLELRDTDLDTF 237

Query: 358 ------TGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISET 411
                 TG    L +  + + +K+ +  L   + K L+ +  L  L    N     + + 
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG 295

Query: 412 FFSNMSNLQMLFLADNSLT-----LKLSHDWVPAFQLKWLSLASC 451
            F  +++LQ ++L  N        +     W+     K    A C
Sbjct: 296 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 340

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 65/282 (23%), Positives = 110/282 (39%), Gaps = 13/282 (4%)

Query: 518 VIDISSNNFDGPIPP-LPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIP 575
           +   SS + +  IP  L      L+LS N+ + + +  L    +L  L L +N  +    
Sbjct: 35  ICKGSSGSLNS-IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 576 DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII 635
           DS   L +++ L L  N L+    S  K  S L  L+L  N       T +   L  L I
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 636 LRLKSNNFHGNIPFQ-LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ-EKSSNPIIGL 693
           LR+ + +    I  +    L F++ L++  +++    PK   +   +          I L
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVK-----YLDLSSNKLCEAIPEE 748
               + V   +      D  L T+  SE     T   +K      + ++   L   + + 
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKL 272

Query: 749 ITDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHF 789
           +  + GL  L  SRN L   +P  I  +L SL  + L  N +
Sbjct: 273 LNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 16/227 (7%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHP--FRDLSGFE 166
           +   L  L HLDLS N         F   LS L +LNL  G P   +     F  L+  +
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKP-LSSLTFLNLL-GNPYKTLGETSLFSHLTKLQ 152

Query: 167 YFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYL 226
              V N + F+    +  + L+ L  L++   +L       + +  + ++  L+L     
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP--KSLKSIQNVSHLILHMKQH 210

Query: 227 PPINPSFIWLFNLSTSIETLDLSDNHL---PSSSVYPWLFNLSRNILHL---DLGFNHLQ 280
             +   F    ++++S+E L+L D  L     S +     N            +    L 
Sbjct: 211 ILLLEIF---VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

Query: 281 GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
             + +    +  L  L  + N+L+      F  + SL +++L  N  
Sbjct: 268 -QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 46/258 (17%), Positives = 87/258 (33%), Gaps = 39/258 (15%)

Query: 579 GFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRL 638
           G    +++L L NNR+     S L+ C  L+ L L  N +   +      SL +L  L L
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDL 107

Query: 639 KSNNFHGNIP---FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLAN 695
             N    N+    F+   L+ +  L+L  N           +               L  
Sbjct: 108 SYNYLS-NLSSSWFK--PLSSLTFLNLLGNPYKTLGETSLFS--------------HLTK 150

Query: 696 EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGL 755
             ++  G +  F  +               + L F++ L++ ++ L    P+ +  +  +
Sbjct: 151 LQILRVGNMDTFTKIQRKDF----------AGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 756 TALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLS--------LLSGLSVLD 807
           + L L       L+   +    S++ L+L          S LS               + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 808 LSYNSLSGKIPLGTQLQS 825
           ++  SL   + L  Q+  
Sbjct: 261 ITDESLFQVMKLLNQISG 278

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 735 DLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIP 794
             SS  L  +IP  +T    + +L+LS N +T +    + +  +L  L L+ N  +    
Sbjct: 37  KGSSGSL-NSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 795 SSLSLLSGLSVLDLSYNSLSGKIPLGT 821
            S S L  L  LDLSYN LS  +    
Sbjct: 94  DSFSSLGSLEHLDLSYNYLS-NLSSSW 119

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.0 bits (228), Expect = 2e-19
 Identities = 58/328 (17%), Positives = 97/328 (29%), Gaps = 83/328 (25%)

Query: 495 LNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLP----SNSTFLNLSKNKFSGL 550
            N   N ISG   D            +   N +  +  L     +  + L L++   S L
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL 74

Query: 551 PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRV 610
           PD       +++L +  N     +P+      +++ L   +NRL+  LP    +   L+ 
Sbjct: 75  PDNL--PPQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPELPAS---LKH 124

Query: 611 LDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGK 670
           LD+  N L     T +      L  +   +N     +P     L   +VL +        
Sbjct: 125 LDVDNNQL-----TMLPELPALLEYINADNNQLT-MLPELPTSL---EVLSV-------- 167

Query: 671 IPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGF 730
                           +N +  L                                 +L  
Sbjct: 168 ---------------RNNQLTFLPELP----------------------------ESL-- 182

Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLT----ALNLSRNNLTGLIPPKIGQLKSLDFLDLSR 786
            + LD+S+N L E++P                    N +T + P  I  L     + L  
Sbjct: 183 -EALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILED 239

Query: 787 NHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           N  S  I  SLS  +            S
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.0 bits (228), Expect = 2e-19
 Identities = 53/313 (16%), Positives = 104/313 (33%), Gaps = 58/313 (18%)

Query: 535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL 594
           S ++F N     ++     W  +   ++     N     + +    ++    L L    L
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC--LINQFSELQLNRLNL 71

Query: 595 NGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHL 654
           +  LP +L    ++ VL++ +NAL   +P        +L  L    +N    +P     L
Sbjct: 72  S-SLPDNL--PPQITVLEITQNAL-ISLPE----LPASLEYLDA-CDNRLSTLPELPASL 122

Query: 655 AFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVL 714
              + LD+  N ++  +P+  +    +     +N +  L                     
Sbjct: 123 ---KHLDVDNNQLT-MLPELPALLEYI--NADNNQLTMLPELP----------------- 159

Query: 715 LTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG 774
                      ++L   + L + +N+L   +PE       L AL++S N L  L P    
Sbjct: 160 -----------TSL---EVLSVRNNQL-TFLPELPE---SLEALDVSTNLLESL-PAVPV 200

Query: 775 QLKSL----DFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASV 830
           +         F     N  + +IP ++  L     + L  N LS +I      Q+     
Sbjct: 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 831 YAGNLELCGLPLP 843
           +   +        
Sbjct: 260 HGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 1e-18
 Identities = 75/432 (17%), Positives = 136/432 (31%), Gaps = 92/432 (21%)

Query: 378 NHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDW 437
           N ++GT     S   K E  +L G +    +S      ++    L L   +L+       
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS------- 72

Query: 438 VPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNL 497
                               P+ L  Q  +  L+I+   +  ++P+    L     +L+ 
Sbjct: 73  ------------------SLPDNLPPQ--ITVLEITQNALI-SLPELPASLE----YLDA 107

Query: 498 SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNF 557
            +N +S                          +P LP++   L++  N+ + LP+     
Sbjct: 108 CDNRLST-------------------------LPELPASLKHLDVDNNQLTMLPEL---P 139

Query: 558 NSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA 617
             L  +N  NN+ +  +P+    L   + LS+RNN+L   LP   ++   L  LD+  N 
Sbjct: 140 ALLEYINADNNQLT-MLPELPTSL---EVLSVRNNQLT-FLPELPES---LEALDVSTNL 191

Query: 618 LFGEVPTCVGG---SLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKC 674
           L   +P        S +  I  R + N    +IP  +  L     + L  N +S +I + 
Sbjct: 192 L-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249

Query: 675 FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLT----------WKGSEHEY 724
            S      Q     P I  +                                W   EHE 
Sbjct: 250 LSQ--QTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEE 307

Query: 725 KST--LGFVKYLDLSSN-----KLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK 777
            +     F+  L  + +        E +   +  L     L      +            
Sbjct: 308 HANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRV 367

Query: 778 SLDFLDLSRNHF 789
           +L + +L +   
Sbjct: 368 ALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.9 bits (181), Expect = 1e-13
 Identities = 51/304 (16%), Positives = 106/304 (34%), Gaps = 49/304 (16%)

Query: 295 LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYA 354
             SL+ N     I   + +  S       +  L G+      +L   C +N    L L  
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDK-WEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 355 NDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFF 413
            +++  +PD L     + VL++ +N L  ++ +  + L   E L    N  +     T  
Sbjct: 69  LNLSS-LPDNLPP--QITVLEITQNAL-ISLPELPASL---EYLDACDNRLS-----TLP 116

Query: 414 SNMSNLQMLFLADNSLTLKLSHDWVPAF--QLKWLSLASCKMGPHFPNWLQTQNQLISLD 471
              ++L+ L + +N LT       +P     L++++  + ++    P        L  L 
Sbjct: 117 ELPASLKHLDVDNNQLT------MLPELPALLEYINADNNQLT-MLPELPT---SLEVLS 166

Query: 472 ISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIP 531
           + N  ++  +P+    L      L++S N +   LP +                      
Sbjct: 167 VRNNQLT-FLPELPESLEA----LDVSTNLLES-LPAVP-----------------VRNH 203

Query: 532 PLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN 591
                  F    +N+ + +P+  L+ +    + L +N  S +I +S+             
Sbjct: 204 HSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

Query: 592 NRLN 595
              +
Sbjct: 264 IYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 2e-13
 Identities = 61/318 (19%), Positives = 106/318 (33%), Gaps = 46/318 (14%)

Query: 137 SLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLS 196
           SLS+  + N   GT +      F     +E   +   N     SL +   ++    L L+
Sbjct: 12  SLSQNSFYNTISGTYADY----FSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 197 CINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSS 256
            +NL+   D          +  L +    L  +            S+E LD  DN L + 
Sbjct: 68  RLNLSSLPDNL-----PPQITVLEITQNALISLPELP-------ASLEYLDACDNRLST- 114

Query: 257 SVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCS 316
                L  L  ++ HLD+  N L   +PE       L  ++  +N+L   +P+      S
Sbjct: 115 -----LPELPASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPE---LPTS 161

Query: 317 LNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLK----V 372
           L  L +  N+L+  L EL ++         LE L +  N +        R    +     
Sbjct: 162 LEVLSVRNNQLT-FLPELPES---------LEALDVSTNLLESLPAVPVRNHHSEETEIF 211

Query: 373 LKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLK 432
            +  EN +   I +++  L    T+ L+ N  +        S  +            ++ 
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 433 LSHDWVPAFQLKWLSLAS 450
                     L     A 
Sbjct: 270 DGQQNTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.1 bits (161), Expect = 3e-11
 Identities = 43/237 (18%), Positives = 81/237 (34%), Gaps = 38/237 (16%)

Query: 108 PALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEY 167
                +     L L++ +   S +P+ +    ++  L ++       +P     L   EY
Sbjct: 53  LKECLINQFSELQLNRLNL--SSLPDNLP--PQITVLEIT-QNALISLPELPASL---EY 104

Query: 168 FNVENSNLFSV----GSLERL-----------SHLSSLRHLDLSCINLTKSSDWFQVVSQ 212
            +  ++ L ++     SL+ L              + L +++     LT       +   
Sbjct: 105 LDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT------MLPEL 158

Query: 213 LHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPS-SSVYPWLFNLSRNILH 271
             SL+ L +R+  L        +L  L  S+E LD+S N L S  +V     +     + 
Sbjct: 159 PTSLEVLSVRNNQL-------TFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIF 211

Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLS 328
                N +   IPE    +     + L  N L   I +      +    + PR   S
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 37/243 (15%)

Query: 116 LRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL 175
           +  L++++N      +PE   SL  L   +       S +P     L   ++ +V+N+ L
Sbjct: 82  ITVLEITQNAL--ISLPELPASLEYLDACDNRL----STLPELPASL---KHLDVDNNQL 132

Query: 176 FS----VGSLERLS-----------HLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLV 220
                    LE ++             +SL  L +    LT       +     SL+ L 
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT------FLPELPESLEALD 186

Query: 221 LRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQ 280
           + +  L  +    +   +   +       +N +  + +   + +L      + L  N L 
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENRI--THIPENILSL-DPTCTIILEDNPLS 243

Query: 281 GSIPEAFQHMVSLRLLSLASNELE---GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQN 337
             I E+     +               G        +      + P NK S  +S++   
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS-DVSQIWHA 302

Query: 338 LSS 340
              
Sbjct: 303 FEH 305

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.1 bits (216), Expect = 5e-18
 Identities = 72/493 (14%), Positives = 136/493 (27%), Gaps = 98/493 (19%)

Query: 370 LKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSL 429
                     +  T   S   L  L +L    +S T +   T    ++ L  L    N++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNI 76

Query: 430 TLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLS 489
           T   + D      L +L+  S              N+L +LD++                
Sbjct: 77  T---TLDLSQNTNLTYLACDS--------------NKLTNLDVTP--------------L 105

Query: 490 IELFFLNLSNNHIS----GKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN 545
            +L +LN   N ++     + P L+ L       + + N          +  T L+   N
Sbjct: 106 TKLTYLNCDTNKLTKLDVSQNPLLTYL-------NCARNTLTEIDVSHNTQLTELDCHLN 158

Query: 546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNC 605
           K     D       L+ L+ + N+ +      +     +  L+   N +  +L   L   
Sbjct: 159 KKITKLDVT-PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQN 211

Query: 606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLN 665
            +L  LD   N L  E+       L  L       N         +  L+ +  L     
Sbjct: 212 IQLTFLDCSSNKL-TEIDV---TPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQT 264

Query: 666 NISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYK 725
           ++                      +             + YF+      +          
Sbjct: 265 DLL------------------EIDLTHNTQ--------LIYFQAEGCRKIK-----ELDV 293

Query: 726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785
           +    +  LD  +  +   +   ++    L  L L+   LT L    +     L  L   
Sbjct: 294 THNTQLYLLDCQAAGI-TELD--LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCV 347

Query: 786 RNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNK 845
             H   +  S +  +  L+    +               S   +V    L+  G P+  +
Sbjct: 348 NAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

Query: 846 CADEESTPSPGRD 858
             D          
Sbjct: 406 PGDGGVYDQATNT 418

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 78/465 (16%), Positives = 140/465 (30%), Gaps = 104/465 (22%)

Query: 158 PFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLK 217
               L+     +  NS++     +  +  L+ L  L  +  N+T        +SQ  +L 
Sbjct: 37  SEEQLATLTSLDCHNSSI---TDMTGIEKLTGLTKLICTSNNITTLD-----LSQNTNLT 88

Query: 218 TLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFN 277
            L   S  L  ++          T +  L+   N L          + +  + +L+   N
Sbjct: 89  YLACDSNKLTNLD------VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARN 137

Query: 278 HLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG-QLSELIQ 336
            L   I     H   L  L    N+    +         L  L    NK++   +S+   
Sbjct: 138 TLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELDVSQN-- 190

Query: 337 NLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLET 396
                     L  L    N+IT    DL + + L  L    N L   I+  ++ L +L  
Sbjct: 191 --------KLLNRLNCDTNNITK--LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTY 237

Query: 397 LSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT-LKLSHDWVPAFQLKWLSLASCKMGP 455
                N  T +      S +S L  L      L  + L+H      QL +     C    
Sbjct: 238 FDCSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTH----NTQLIYFQAEGC---- 285

Query: 456 HFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSD 515
                     ++  LD+++              + +L+ L+     I+            
Sbjct: 286 ---------RKIKELDVTH--------------NTQLYLLDCQAAGITE----------- 311

Query: 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIP 575
              +D+S N              +L L+  + + L     +   L  L+  N        
Sbjct: 312 ---LDLSQN----------PKLVYLYLNNTELTELDVS--HNTKLKSLSCVNAHIQ-DFS 355

Query: 576 DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFG 620
            S+G +  +        +       +L N S    +       FG
Sbjct: 356 -SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.4 bits (209), Expect = 3e-17
 Identities = 77/413 (18%), Positives = 138/413 (33%), Gaps = 58/413 (14%)

Query: 293 LRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCL 352
                 A+ E++         + +L  L    + ++        +++    +  L  L  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT--------DMTGIEKLTGLTKLIC 71

Query: 353 YANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETF 412
            +N+IT    DL +  +L  L    N L    N  ++ L KL  L+ D N     +++  
Sbjct: 72  TSNNITTL--DLSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNK----LTKLD 122

Query: 413 FSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDI 472
            S    L  L  A N+LT     D     QL  L     K        +  Q QL +LD 
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177

Query: 473 SNIGISDTIPDWFWDLS--IELFFLNLSNNHIS----GKLPDLSVLKSDDIVIDISSNNF 526
           S   I++       D+S    L  LN   N+I+     +   L+ L       D SSN  
Sbjct: 178 SFNKITEL------DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFL-------DCSSNKL 224

Query: 527 DG-PIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQ 585
               + PL    T+ + S N  + L       + L+ L+             +   HN Q
Sbjct: 225 TEIDVTPLT-QLTYFDCSVNPLTELDVS--TLSKLTTLHCIQTDLL-----EIDLTHNTQ 276

Query: 586 TLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG 645
            +  +           + + ++L +LD +   +              L+ L L +     
Sbjct: 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI----TELDLSQNPKLVYLYLNNTELT- 331

Query: 646 NIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEIL 698
            +   + H   ++ L     +I           ++    ++    I +  E L
Sbjct: 332 ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPKETL 381

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 77/442 (17%), Positives = 138/442 (31%), Gaps = 82/442 (18%)

Query: 112 KLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVE 171
           +L  L  LD   +          I  L+ L  L  +    ++         +   Y   +
Sbjct: 40  QLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACD 93

Query: 172 NSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINP 231
           ++ L ++     ++ L+ L +L+     LTK       VSQ   L  L      L  I+ 
Sbjct: 94  SNKLTNL----DVTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID- 143

Query: 232 SFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMV 291
                 + +T +  LD   N   +         L+     LD  FN +   +        
Sbjct: 144 -----VSHNTQLTELDCHLNKKITKLDVTPQTQLT----TLDCSFNKIT-ELD--VSQNK 191

Query: 292 SLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLC 351
            L  L+  +N +   +         L  L    NKL+      +  L+       L    
Sbjct: 192 LLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT---EIDVTPLT------QLTYFD 239

Query: 352 LYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISET 411
              N +T    D+     L  L   +  L       L+H  +L     +G      I E 
Sbjct: 240 CSVNPLT--ELDVSTLSKLTTLHCIQTDLL---EIDLTHNTQLIYFQAEGCRK---IKEL 291

Query: 412 FFSNMSNLQMLFLADNSLT-LKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISL 470
             ++ + L +L      +T L LS       +L +L L +               +L  L
Sbjct: 292 DVTHNTQLYLLDCQAAGITELDLSQ----NPKLVYLYLNN--------------TELTEL 333

Query: 471 DISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPI 530
           D+S+                +L  L+  N HI      +  + + +   +        P 
Sbjct: 334 DVSHN--------------TKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPK 378

Query: 531 PPLPSNSTFLNLSKNKFSGLPD 552
             L +NS  + +S +      +
Sbjct: 379 ETLTNNSLTIAVSPDLLDQFGN 400

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 49/337 (14%), Positives = 90/337 (26%), Gaps = 70/337 (20%)

Query: 107 SPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFE 166
              +     L  LD S N          +     L  LN                     
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCD------------------- 199

Query: 167 YFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYL 226
                 +N+  +     L+    L  LD S   LT+       V+ L  L         L
Sbjct: 200 -----TNNITKLD----LNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPL 245

Query: 227 PPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA 286
             ++ S +      + + TL      L          +L+ N   +       +      
Sbjct: 246 TELDVSTL------SKLTTLHCIQTDLLE-------IDLTHNTQLIYFQAEGCRKIKELD 292

Query: 287 FQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSEL-IQNLSSGCTVN 345
             H   L LL   +  +   +         L  LYL       +L+EL + +        
Sbjct: 293 VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNT----ELTELDVSHN------T 339

Query: 346 SLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHL-----NGTINKSLSHLFKLETLSLD 400
            L+ L      I      +G+  +L      E            N SL+     + L   
Sbjct: 340 KLKSLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQF 398

Query: 401 GNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDW 437
           GN       +    + +   + +   ++    +++ +
Sbjct: 399 GNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTF 435

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 52/276 (18%), Positives = 88/276 (31%), Gaps = 55/276 (19%)

Query: 556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615
           NF S                 S   L  + +L   N+ +     + ++  + L  L    
Sbjct: 19  NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTS 73

Query: 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF 675
           N +   +         NL  L   SN    N+      L  +  L+   N ++       
Sbjct: 74  NNI-TTLDL---SQNTNLTYLACDSNKLT-NLDVT--PLTKLTYLNCDTNKLTKLDVSQN 126

Query: 676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLD 735
              + +    + N +                   +D    T                 LD
Sbjct: 127 PLLTYL--NCARNTL-----------------TEIDVSHNTQL-------------TELD 154

Query: 736 LSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPS 795
              NK    +   +T    LT L+ S N +T L    + Q K L+ L+   N+ +  +  
Sbjct: 155 CHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD- 207

Query: 796 SLSLLSGLSVLDLSYNSLSGKIPLG--TQLQSFNAS 829
            L+    L+ LD S N L+ +I +   TQL  F+ S
Sbjct: 208 -LNQNIQLTFLDCSSNKLT-EIDVTPLTQLTYFDCS 241

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.2 bits (201), Expect = 4e-16
 Identities = 74/365 (20%), Positives = 123/365 (33%), Gaps = 69/365 (18%)

Query: 106 ISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSL----SKLRYLNLSCGTPSSKIPHPFRD 161
           +S  L  L  L+ L LS N  G + +      L     +L  L L   + S+        
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA------- 157

Query: 162 LSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLH------- 214
               E        L SV     L      + L +S  ++ ++      V  L        
Sbjct: 158 --SCEP-------LASV-----LRAKPDFKELTVSNNDINEAG-----VRVLCQGLKDSP 198

Query: 215 -SLKTLVLRSCYLPPINPSFI-WLFNLSTSIETLDLSDNHLPSSSV---YPWLFNLSRNI 269
             L+ L L SC +   N   +  +     S+  L L  N L    +    P L + S  +
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258

Query: 270 LHLDLGFNHLQ----GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNM-----CSLNQL 320
             L +    +     G +    +   SL+ LSLA NEL     +          C L  L
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318

Query: 321 YLPRNKLSGQLSELIQNLSSGCTVN-SLEGLCLYANDITGP-IPDLGRFL-----SLKVL 373
           ++     +   +    + SS    N  L  L +  N +    + +L + L      L+VL
Sbjct: 319 WVKSCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 374 KLGENHLN----GTINKSLSHLFKLETLSLDGNSFT--GV--ISETFFSNMSNLQMLFLA 425
            L +  ++     ++  +L     L  L L  N     G+  + E+       L+ L L 
Sbjct: 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 435

Query: 426 DNSLT 430
           D   +
Sbjct: 436 DIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.2 bits (196), Expect = 2e-15
 Identities = 90/522 (17%), Positives = 167/522 (31%), Gaps = 125/522 (23%)

Query: 188 SSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFI-WLFNLSTSIETL 246
             ++ LD+ C  L+  + W +++  L   + + L  C L       I     ++ ++  L
Sbjct: 3   LDIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 247 DLSDNHLPSSSVYPW---LFNLSRNILHLDLGFNHLQ----GSIPEAFQHMVSLRLLSLA 299
           +L  N L    V+     L   S  I  L L    L     G +    + + +L+ L L+
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 300 SNEL-EGGIPKFFG----NMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVN-SLEGLCLY 353
            N L + G+           C L +L L    LS   +   + L+S        + L + 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---AASCEPLASVLRAKPDFKELTVS 178

Query: 354 ANDITGP-IPDLGRFL-----SLKVLKLGENHLN----GTINKSLSHLFKLETLSLDGNS 403
            NDI    +  L + L      L+ LKL    +       +   ++    L  L+L  N 
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 404 FT--GV--ISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPN 459
               G+  +        S L+ L++ +  +T K             L             
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAK---------GCGDLCRV---------- 279

Query: 460 WLQTQNQLISLDISNIGISDT----IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSD 515
            L+ +  L  L ++   + D     + +   +   +L  L + +              + 
Sbjct: 280 -LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF-----------TA 327

Query: 516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGK-- 573
                 SS                  L++N+             L  L ++NNR      
Sbjct: 328 ACCSHFSS-----------------VLAQNR------------FLLELQISNNRLEDAGV 358

Query: 574 --IPDSMGFLH-NIQTLSLRNNRLNGE----LPSSLKNCSKLRVLDLRKNALFGEVPTCV 626
             +   +G     ++ L L +  ++      L ++L     LR LDL  N L        
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-------- 410

Query: 627 GGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS 668
           G +    ++  ++            C L   + L L     S
Sbjct: 411 GDAGILQLVESVRQPG---------CLL---EQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.7 bits (192), Expect = 5e-15
 Identities = 74/435 (17%), Positives = 145/435 (33%), Gaps = 75/435 (17%)

Query: 116 LRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL 175
           ++ LD+   +   +   E +  L + + + L                       +  +  
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLD-------------------DCGLTEARC 45

Query: 176 FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHS----LKTLVLRSCYLPPINP 231
             + S   L    +L  L+L    L        V+  L +    ++ L L++C L     
Sbjct: 46  KDISSA--LRVNPALAELNLRSNELGDVG-VHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102

Query: 232 SFIW-LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRN---ILHLDLGFNHLQ----GSI 283
             +        +++ L LSDN L  + +      L      +  L L +  L       +
Sbjct: 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162

Query: 284 PEAFQHMVSLRLLSLASNELEGGIPKFFG-----NMCSLNQLYLPRNKLSGQLSELIQNL 338
               +     + L++++N++     +        + C L  L L    ++   S+  ++L
Sbjct: 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---SDNCRDL 219

Query: 339 SSGCTVN-SLEGLCLYANDITGP-IPDLGRFL-----SLKVLKLGENHLN----GTINKS 387
                   SL  L L +N +    + +L   L      L+ L + E  +     G + + 
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279

Query: 388 LSHLFKLETLSLDGNSFT--GV--ISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQ- 442
           L     L+ LSL GN     G   + ET       L+ L++   S T      +      
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 443 ---LKWLSLASCKMGP----HFPNWLQTQN-QLISLDISNIGISDTIPDWFWDLS----- 489
              L  L +++ ++           L      L  L +++  +SD        L+     
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD---SSCSSLAATLLA 396

Query: 490 -IELFFLNLSNNHIS 503
              L  L+LSNN + 
Sbjct: 397 NHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.6 bits (171), Expect = 2e-12
 Identities = 75/419 (17%), Positives = 133/419 (31%), Gaps = 70/419 (16%)

Query: 106 ISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLS----KLRYLNLSCGTPSSKIPHPFRD 161
           IS AL     L  L+L  N+ G   V   +  L     K++ L+L     +         
Sbjct: 48  ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA------- 100

Query: 162 LSGFEYFNVENSNLFSVGSL-ERLSHLSSLRHLDLSCINLTKSS--DWFQVVSQLHS-LK 217
                            G L   L  L +L+ L LS   L  +      + +      L+
Sbjct: 101 ---------------GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 218 TLVLRSCYLPPINPSFIW-LFNLSTSIETLDLSDNHLPSSSVY---PWLFNLSRNILHLD 273
            L L  C L   +   +  +       + L +S+N +  + V      L +    +  L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 274 LGFNHLQ----GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNM-----CSLNQLYLPR 324
           L    +       +        SLR L+L SN+L                  L  L++  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 325 NKLSGQLSELIQNLSSGCTVN-SLEGLCLYANDITGP-IPDLGRFL-----SLKVLKLGE 377
             ++   ++   +L        SL+ L L  N++       L   L      L+ L +  
Sbjct: 266 CGIT---AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 378 NHLNGT----INKSLSHLFKLETLSLDGNSFT--GV--ISETFFSNMSNLQMLFLADNSL 429
                      +  L+    L  L +  N     GV  + +      S L++L+LAD  +
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

Query: 430 TLKLSHDWVPAFQ----LKWLSLASCKMGP----HFPNWLQTQN-QLISLDISNIGISD 479
           +                L+ L L++  +G          ++     L  L + +I  S+
Sbjct: 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 59/364 (16%), Positives = 101/364 (27%), Gaps = 104/364 (28%)

Query: 488 LSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKF 547
           +S+++  L++    +S           D    ++                  + L     
Sbjct: 1   MSLDIQSLDIQCEELS-----------DARWAELLPLL---------QQCQVVRLDDCGL 40

Query: 548 SGLPDCW------LNFN-SLSILNLANNRFSGK----IPDSMGFLH-NIQTLSLRNNRLN 595
           +            L  N +L+ LNL +N         +   +      IQ LSL+N  L 
Sbjct: 41  T--EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98

Query: 596 GE----LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQN----LIILRLKSNNFH--- 644
           G     L S+L+    L+ L L  N L       +   L +    L  L+L+  +     
Sbjct: 99  GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 645 -GNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGY 703
              +   L      + L +S N+I+    +                      + L     
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLC-------------------QGLKDS-- 197

Query: 704 IYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL----CEAIPEEITDLVGLTALN 759
                                   L   + L L S  +    C  +   +     L  L 
Sbjct: 198 ---------------------PCQL---EALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 760 LSRNNLTG-----LIPPKIGQLKSLDFLDLSRNHFS----GNIPSSLSLLSGLSVLDLSY 810
           L  N L       L P  +     L  L +     +    G++   L     L  L L+ 
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293

Query: 811 NSLS 814
           N L 
Sbjct: 294 NELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 59.6 bits (145), Expect = 3e-09
 Identities = 80/495 (16%), Positives = 137/495 (27%), Gaps = 134/495 (27%)

Query: 368 LSLKVLKLGENHLNGTINKSLSHLFK-LETLSLDGNSFTGVISETFFS---NMSNLQMLF 423
           L ++ L +    L+      L  L +  + + LD    T    +   S       L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 424 LADNSLT----------LKLSHDWVPAFQLKWLSLASCKMGP----HFPNWLQTQNQLIS 469
           L  N L           L+         +++ LSL +C +         + L+T   L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPS-----CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 470 LDISNIGISDT----IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNN 525
           L +S+  + D     + +   D    L  L L    +S                 ++S  
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS-----------AASCEPLASV- 165

Query: 526 FDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGK----IPDSMGFL 581
                           L                    L ++NN  +      +   +   
Sbjct: 166 ----------------LRAKP------------DFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 582 H-NIQTLSLRNNRLNGE----LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIIL 636
              ++ L L +  +  +    L   + + + LR L L  N L           +  L   
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV-------GMAELCPG 250

Query: 637 RLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANE 696
            L  +            L   + L +    I+    K   +   +++ K S   + LA  
Sbjct: 251 LLHPS----------SRL---RTLWIWECGIT---AKGCGDLCRVLRAKESLKELSLAGN 294

Query: 697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL----CEAIPEEITDL 752
            L   G       L                    ++ L + S       C      +   
Sbjct: 295 ELGDEGARLLCETLLEPGCQ--------------LESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 753 VGLTALNLSRNNLT---------GLIPPKIGQLKSLDFLDLSRNHFS----GNIPSSLSL 799
             L  L +S N L          GL  P       L  L L+    S     ++ ++L  
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQP----GSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 800 LSGLSVLDLSYNSLS 814
              L  LDLS N L 
Sbjct: 397 NHSLRELDLSNNCLG 411

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 9e-16
 Identities = 56/280 (20%), Positives = 96/280 (34%), Gaps = 32/280 (11%)

Query: 402 NSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKM-GPHFPNW 460
           N       E +    S   +L   D    L    D + +  LK L++ + ++        
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 461 LQTQN--QLISLDISNIGISDTIPDWFWDLSIE-LFFLNLSNNHISGKLPDLSVLKSDDI 517
           L+      L  L + N+ ++ T P    + +   L  LNL N   + +   L+ L+    
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ--- 145

Query: 518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIP- 575
                          L      L++++        +    F +LS L+L++N   G+   
Sbjct: 146 --------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 576 ---DSMGFLHNIQTLSLRNNRLN---GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGS 629
                      +Q L+LRN  +    G   +      +L+ LDL  N+L           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 630 LQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG 669
              L  L L        +P  L   A + VLDLS N +  
Sbjct: 252 PSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.6 bits (178), Expect = 6e-14
 Identities = 56/266 (21%), Positives = 84/266 (31%), Gaps = 33/266 (12%)

Query: 559 SLSILNLANNRFSGKIPDSMGFLHN---IQTLSLRNNRLNGELPSSLKNCS--KLRVLDL 613
           SL  L +   R   +I      +     +Q L+L N  + G  P  L   +   L +L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 614 RKNAL---FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGK 670
           R  +       +          L +L +   +       Q+     +  LDLS N   G+
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 671 IPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGF 730
                     +I          L    L            +  + T  G      +    
Sbjct: 189 RG--------LISALCPLKFPTLQVLAL-----------RNAGMETPSGVCSALAAARVQ 229

Query: 731 VKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
           ++ LDLS N L +A           L +LNLS   L  + P  +     L  LDLS N  
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLPA--KLSVLDLSYNRL 286

Query: 790 SGNIPSSLSLLSGLSVLDLSYNSLSG 815
               PS   L   +  L L  N    
Sbjct: 287 DR-NPSPDELPQ-VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 51/305 (16%), Positives = 81/305 (26%), Gaps = 66/305 (21%)

Query: 110 LLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFN 169
           ++K   L+ L +         +   +  L                               
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLG------------------------------ 93

Query: 170 VENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPI 229
                            +S L+ L L  + +T ++    + +    L  L LR+      
Sbjct: 94  -----------------ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

Query: 230 NPSFIWLFN-LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSI----- 283
           +     L   L   ++ L ++  H    +       +   +  LDL  N   G       
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHS--LNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 284 --PEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSG 341
             P  F  +  L L +       G           L  L L  N L         +  S 
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS- 253

Query: 342 CTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG 401
                L  L L    +      L     L VL L  N L+     S   L ++  LSL G
Sbjct: 254 ----QLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLDRNP--SPDELPQVGNLSLKG 305

Query: 402 NSFTG 406
           N F  
Sbjct: 306 NPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 1e-12
 Identities = 56/323 (17%), Positives = 96/323 (29%), Gaps = 62/323 (19%)

Query: 262 LFNLSRNILHLDLGFNHLQGSIPEA-FQHMVSLRLLSLASNELEGGIPK---FFGNMCSL 317
           L+   R++ +L    +              +SL+ L++ +  +   I         +  L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 318 NQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRF-----LSLKV 372
            +L L   +++G     +   +       L  L L           L          LKV
Sbjct: 98  QELTLENLEVTGTAPPPLLEATG----PDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 373 LKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG---VISETFFSNMSNLQMLFLADNSL 429
           L + + H      + +     L TL L  N   G   +IS         LQ+L L +  +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 430 TLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLS 489
                                             + QL  LD+S+  + D       D  
Sbjct: 214 E---------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 490 IELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG 549
            +L  LNLS   +  ++P                         LP+  + L+LS N+   
Sbjct: 253 SQLNSLNLSFTGLK-QVP-----------------------KGLPAKLSVLDLSYNRLDR 288

Query: 550 LPDCWLNFNSLSILNLANNRFSG 572
            P        +  L+L  N F  
Sbjct: 289 NPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 49/291 (16%), Positives = 90/291 (30%), Gaps = 34/291 (11%)

Query: 149 GTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLD--LSCINLTKSSDW 206
             P             F     + S+ F+      +      R L+  L  ++       
Sbjct: 1   ADPEPCELDEESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQ 60

Query: 207 FQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLS 266
           F  + +  SLK L +R+  +P             + ++ L L +  +  ++  P L    
Sbjct: 61  FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120

Query: 267 RNILHLDLGFNHLQG---SIPEAFQHMV-SLRLLSLASNELEGGIPKFFGNMCSLNQLYL 322
            ++  L+L           + E  Q +   L++LS+A         +      +L+ L L
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180

Query: 323 PRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLN- 381
             N   G+   +               LC              +F +L+VL L    +  
Sbjct: 181 SDNPELGERGLI-------------SALCP------------LKFPTLQVLALRNAGMET 215

Query: 382 --GTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
             G  +   +   +L+ L L  NS             S L  L L+   L 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 37/254 (14%), Positives = 68/254 (26%), Gaps = 53/254 (20%)

Query: 579 GFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCV--GGSLQNLIIL 636
           G       L   +   +    + +     L+ L +R   +   +         +  L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 637 RLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANE 696
            L++    G  P  L       +  L+L N+S                            
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVS---------------------WATRDAW 139

Query: 697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLT 756
           +  +  ++                          +K L ++         E++     L+
Sbjct: 140 LAELQQWL-----------------------KPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 757 ALNLSRNNLTGLIPPKI----GQLKSLDFLDLSRNHF---SGNIPSSLSLLSGLSVLDLS 809
            L+LS N   G           +  +L  L L        SG   +  +    L  LDLS
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 810 YNSLSGKIPLGTQL 823
           +NSL       +  
Sbjct: 237 HNSLRDAAGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 8/117 (6%)

Query: 88  NLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLS 147
            LQ      A  +   G  S        L+ LDLS N    +         S+L  LNLS
Sbjct: 202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261

Query: 148 CGTPSSKIPHPFRDL-SGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKS 203
                + +    + L +     ++  + L           L  + +L L       S
Sbjct: 262 ----FTGLKQVPKGLPAKLSVLDLSYNRL---DRNPSPDELPQVGNLSLKGNPFLDS 311

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 50/195 (25%), Positives = 74/195 (37%), Gaps = 16/195 (8%)

Query: 237 FNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL 296
            +   S   ++    +L  +++ P   +L ++   L L  N L             L  L
Sbjct: 6   VSKVASHLEVNCDKRNL--TALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
           +L   EL   +    G +  L  L L  N+L   L  L Q L       +L  L +  N 
Sbjct: 61  NLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP------ALTVLDVSFNR 111

Query: 357 ITGPIPDLGRFLS-LKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSN 415
           +T       R L  L+ L L  N L       L+   KLE LSL  N+ T  +     + 
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNG 170

Query: 416 MSNLQMLFLADNSLT 430
           + NL  L L +NSL 
Sbjct: 171 LENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 40/186 (21%), Positives = 62/186 (33%), Gaps = 14/186 (7%)

Query: 141 LRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINL 200
              L+LS     +         +     N++ + L     L+    L  L  LDLS   L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQL 89

Query: 201 TKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYP 260
                  Q    L +L  L +    L  +             ++ L L  N L   ++ P
Sbjct: 90  QSLPLLGQ---TLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNEL--KTLPP 141

Query: 261 WLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQ 319
            L   +  +  L L  N+L   +P      + +L  L L  N L      FFG+   L  
Sbjct: 142 GLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPF 199

Query: 320 LYLPRN 325
            +L  N
Sbjct: 200 AFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 48/263 (18%), Positives = 81/263 (30%), Gaps = 68/263 (25%)

Query: 311 FGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG-PIPDLGRFLS 369
              + S  ++   +      L+ L  +L           L L  N +    +  L  +  
Sbjct: 6   VSKVASHLEVNCDKR----NLTALPPDLPK-----DTTILHLSENLLYTFSLATLMPYTR 56

Query: 370 LKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSL 429
           L  L L    L  T  +    L  L TL L  N    +        +  L +L ++ N L
Sbjct: 57  LTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRL 112

Query: 430 TLKLSHDWVPAF----QLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWF 485
           T  L      A     +L+ L L                N+L +L           P   
Sbjct: 113 T-SLPLG---ALRGLGELQELYLKG--------------NELKTLP----------PGLL 144

Query: 486 WDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN 545
                +L  L+L+NN+++                ++ +   +G    L  N   L L +N
Sbjct: 145 TPTP-KLEKLSLANNNLT----------------ELPAGLLNG----LE-NLDTLLLQEN 182

Query: 546 KFSGLPDCWLNFNSLSILNLANN 568
               +P  +   + L    L  N
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 46/231 (19%), Positives = 74/231 (32%), Gaps = 38/231 (16%)

Query: 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
           S   +N      +  +P       +   L L  N L     ++L   ++L  L+L +  L
Sbjct: 11  SHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 619 FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF 678
             ++   V G+L  L  L L  N    ++P     L  + VLD+S N ++          
Sbjct: 68  -TKLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 679 SMMIQ-EKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLS 737
             + +     N +  L   +                 L                  L L+
Sbjct: 124 GELQELYLKGNELKTLPPGL---------LTPTPK--LEK----------------LSLA 156

Query: 738 SNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRN 787
           +N L   +P  +   L  L  L L  N+L   IP        L F  L  N
Sbjct: 157 NNNL-TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDL 784
            TL  +  LDLS N+L +++P     L  LT L++S N LT L P      L  L  L L
Sbjct: 74  GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYL 131

Query: 785 SRNHFSGNIPSSL-SLLSGLSVLDLSYNSLSGKIPLG-----TQLQ 824
             N     +P  L +    L  L L+ N+L+ ++P G       L 
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 495 LNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLP--SNSTFLNLSKNKFSGLPD 552
           L+LS N +       +++    +            +           L+LS N+   LP 
Sbjct: 36  LHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL 94

Query: 553 CWLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLSLRNNRLNGELPSSL-KNCSKLR 609
                 +L++L+++ NR +  +P       L  +Q L L+ N L   LP  L     KL 
Sbjct: 95  LGQTLPALTVLDVSFNRLT-SLPLGA-LRGLGELQELYLKGNELK-TLPPGLLTPTPKLE 151

Query: 610 VLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP---FQLCHLAFIQ 658
            L L  N L  E+P  +   L+NL  L L+ N+ +  IP   F    L F  
Sbjct: 152 KLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 32/120 (26%)

Query: 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIP--------------------- 770
             ++     L  A+P ++      T L+LS N L                          
Sbjct: 13  LEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69

Query: 771 -PKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG-----TQLQ 824
               G L  L  LDLS N    ++P     L  L+VLD+S+N L+  +PLG      +LQ
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQ 127

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 9e-15
 Identities = 59/326 (18%), Positives = 115/326 (35%), Gaps = 50/326 (15%)

Query: 262 LFNLSR--NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQ 319
           +F        +  +L    +  ++      + S+  +   +++++    +    + ++ +
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK--SVQGIQYLPNVTK 69

Query: 320 LYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENH 379
           L+L  NKL+      I+ L++   + +L  L L  N I   +  L     LK L L  N 
Sbjct: 70  LFLNGNKLTD-----IKPLTN---LKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNG 120

Query: 380 LNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVP 439
           +  +    L HL +LE+L L  N  T +   T  S ++ L  L L DN ++  +      
Sbjct: 121 I--SDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQIS-DIVP---- 170

Query: 440 AFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSN 499
                                L    +L +L +S   ISD        L   L  L L +
Sbjct: 171 ---------------------LAGLTKLQNLYLSKNHISDLRA--LAGLK-NLDVLELFS 206

Query: 500 NHISGKLPD-LSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFN 558
                K  +  S L   + V +   +     I     +    N+  +      +    F 
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFY 266

Query: 559 SLSILNLANNRFSGKIPDSMGFLHNI 584
               +  A  RF G++   +  ++ +
Sbjct: 267 QPVTIGKAKARFHGRVTQPLKEVYTV 292

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.9 bits (173), Expect = 1e-12
 Identities = 57/281 (20%), Positives = 106/281 (37%), Gaps = 31/281 (11%)

Query: 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNN 525
           + I  ++    ++D +     +L+  +  +  +N+ I   +  +  L +    + ++ N 
Sbjct: 22  ETIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIK-SVQGIQYLPNV-TKLFLNGNK 76

Query: 526 FDGPIPPLPS--NSTFLNLSKNK---FSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGF 580
               I PL +  N  +L L +NK    S L D       L  L+L +N  S  I + +  
Sbjct: 77  LTD-IKPLTNLKNLGWLFLDENKIKDLSSLKDL----KKLKSLSLEHNGIS-DI-NGLVH 129

Query: 581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS 640
           L  +++L L NN++     + L   +KL  L L  N +  ++       L  L  L L S
Sbjct: 130 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI-SDIVPL--AGLTKLQNLYL-S 183

Query: 641 NNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVV 700
            N   ++   L  L  + VL+L       K     SN  +          +   +  LV 
Sbjct: 184 KNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVP-------NTVKNTDGSLVT 235

Query: 701 PGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL 741
           P  I      +   + W   E   + +  F + + +   K 
Sbjct: 236 PEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 276

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 9e-11
 Identities = 44/222 (19%), Positives = 78/222 (35%), Gaps = 27/222 (12%)

Query: 108 PALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPH--PFRDLSGF 165
               +L  +  +  + +D       + I  L  +  L L+     +K+    P  +L   
Sbjct: 37  VTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLN----GNKLTDIKPLTNLKNL 89

Query: 166 EYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCY 225
            +  ++ + +     L  L  L  L+ L L    ++        +  L  L++L L +  
Sbjct: 90  GWLFLDENKI---KDLSSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNK 142

Query: 226 LPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE 285
           +  I      L  L T ++TL L DN +        L  L     +L L  NH+  S   
Sbjct: 143 ITDITV----LSRL-TKLDTLSLEDNQISDIVPLAGLTKLQ----NLYLSKNHI--SDLR 191

Query: 286 AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
           A   + +L +L L S E          N+   N +      L
Sbjct: 192 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 1e-09
 Identities = 45/254 (17%), Positives = 75/254 (29%), Gaps = 71/254 (27%)

Query: 563 LNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEV 622
               +       PD           +L+   +      +    + +  +    + +    
Sbjct: 4   TITVSTPIKQIFPDDA--FAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDI---- 55

Query: 623 PTCVGG--SLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSM 680
              V G   L N+  L L + N   +I   L +L  +  L L  N I             
Sbjct: 56  -KSVQGIQYLPNVTKLFL-NGNKLTDI-KPLTNLKNLGWLFLDENKIKD----------- 101

Query: 681 MIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNK 740
                    +  L +              L  +                  K L L  N 
Sbjct: 102 ---------LSSLKD--------------LKKL------------------KSLSLEHNG 120

Query: 741 LCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLL 800
           + +     +  L  L +L L  N +T +    + +L  LD L L  N  S +I   L+ L
Sbjct: 121 ISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DI-VPLAGL 174

Query: 801 SGLSVLDLSYNSLS 814
           + L  L LS N +S
Sbjct: 175 TKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 4e-09
 Identities = 56/368 (15%), Positives = 107/368 (29%), Gaps = 38/368 (10%)

Query: 530 IPPLPS--NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
           I P  +   +   NL K   +         NS+  +   N+     +   + +L N+  L
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 70

Query: 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG--SLQNLIILRLKSNNFHG 645
            L  N+L       L N   L  L L +N +       +     L+ L  L L+ N    
Sbjct: 71  FLNGNKLTDI--KPLTNLKNLGWLFLDENKI-----KDLSSLKDLKKLKSLSLEHNGIS- 122

Query: 646 NIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK----SSNPIIGLANEILVVP 701
           +I   L HL  ++ L L  N I+       +  S + +        N I  +    L   
Sbjct: 123 DING-LVHLPQLESLYLGNNKIT-----DITVLSRLTKLDTLSLEDNQISDI--VPLAGL 174

Query: 702 GYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLS 761
             +       N +   +         L  +  L+L S +         ++LV    +  +
Sbjct: 175 TKLQNLYLSKNHISDLRALAG-----LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 762 RNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLS----LLSGLSVLDLSYNSLSGKI 817
             +L    P  I      +  ++  +        S      +  G +             
Sbjct: 230 DGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK 287

Query: 818 PLGTQLQSFNASVYAGNLELCGLPLPNKCADEESTPSPGRDDDANTVEDEDNQFITLGFY 877
            + T     + +V    +E        K   ++     G   + N   + +     +   
Sbjct: 288 EVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGN 347

Query: 878 VSLTLGFF 885
                  F
Sbjct: 348 DFTLYAVF 355

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.7 bits (131), Expect = 1e-07
 Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 67/248 (27%)

Query: 584 IQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF 643
           +      +  +    P      ++    +L+K ++   V       L ++  +   +++ 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDI 55

Query: 644 HGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGY 703
             ++   + +L  +  L L+ N ++                    P+  L N        
Sbjct: 56  K-SVQG-IQYLPNVTKLFLNGNKLT-----------------DIKPLTNLKN-------- 88

Query: 704 IYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRN 763
                                      + +L L  NK+ +     + DL  L +L+L  N
Sbjct: 89  ---------------------------LGWLFLDENKIKDLSS--LKDLKKLKSLSLEHN 119

Query: 764 NLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG--T 821
            ++ +    +  L  L+ L L  N  +    + LS L+ L  L L  N +S  +PL   T
Sbjct: 120 GISDING--LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVPLAGLT 175

Query: 822 QLQSFNAS 829
           +LQ+   S
Sbjct: 176 KLQNLYLS 183

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 51/250 (20%), Positives = 95/250 (38%), Gaps = 29/250 (11%)

Query: 181 LERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLS 240
           +      +     +L   ++T +       ++L+S+  ++  +  +  +      +  L 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDIKSVQG----IQYL- 67

Query: 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLAS 300
            ++  L L+ N L        L NL      L L  N ++  +  + + +  L+ LSL  
Sbjct: 68  PNVTKLFLNGNKLTDIKPLANLKNLG----WLFLDENKVK-DL-SSLKDLKKLKSLSLEH 121

Query: 301 NELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGP 360
           N +         ++  L  LYL  NK++      I  LS    +  L+ L L  N I+  
Sbjct: 122 NGIS--DINGLVHLPQLESLYLGNNKITD-----ITVLSR---LTKLDTLSLEDNQISD- 170

Query: 361 IPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQ 420
           I  L     L+ L L +NH++    ++L+ L  L+ L L              SN+    
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN-KPINHQSNLVVPN 227

Query: 421 MLFLADNSLT 430
            +   D SL 
Sbjct: 228 TVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 57/308 (18%), Positives = 103/308 (33%), Gaps = 42/308 (13%)

Query: 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSG 164
           +I             +L K              L+ +  +  +    +S I    + + G
Sbjct: 16  QIFS-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIAN----NSDI----KSVQG 63

Query: 165 FEYF-NVENSNLFS--VGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVL 221
            +Y  NV    L    +  ++ L++L +L  L L    +         +  L  LK+L L
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD----LSSLKDLKKLKSLSL 119

Query: 222 RSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG 281
               +  IN     L +L   +E+L L +N +   +V   L  L      L L  N +  
Sbjct: 120 EHNGISDING----LVHL-PQLESLYLGNNKITDITVLSRLTKLD----TLSLEDNQIS- 169

Query: 282 SIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSG 341
            I      +  L+ L L+ N +     +    + +L+ L L   +   +      NL   
Sbjct: 170 DI-VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 342 CTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLE-TLSLD 400
            TV + +G  +    I+    D G +    V               +S +F    T+   
Sbjct: 227 NTVKNTDGSLVTPEIIS----DDGDYEKPNV-----KWHLPEFTNEVSFIFYQPVTIGKA 277

Query: 401 GNSFTGVI 408
              F G +
Sbjct: 278 KARFHGRV 285

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 47/279 (16%), Positives = 81/279 (29%), Gaps = 46/279 (16%)

Query: 361 IPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQ 420
           I     F       L +  +   +    + L  ++ +  + +    V        + N+ 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV---QGIQYLPNVT 71

Query: 421 MLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDT 480
            LFL  N LT                      + P     L     L  L +    + D 
Sbjct: 72  KLFLNGNKLT---------------------DIKP-----LANLKNLGWLFLDENKVKDL 105

Query: 481 IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNS--T 538
                 DL  +L  L+L +N IS  +  L  L      + + +N     I  L   +   
Sbjct: 106 SS--LKDLK-KLKSLSLEHNGIS-DINGLVHLPQL-ESLYLGNNKITD-ITVLSRLTKLD 159

Query: 539 FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLSLRNNRLNG 596
            L+L  N+ S +         L  L L+ N     I D      L N+  L L +     
Sbjct: 160 TLSLEDNQISDIVPL-AGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLN 214

Query: 597 ELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII 635
           +  +   N      +     +L         G  +   +
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 54/288 (18%), Positives = 93/288 (32%), Gaps = 72/288 (25%)

Query: 530 IPPLPS--NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
           I    +   +   NL K   +         NS+  +   N+     +   + +L N+  L
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 73

Query: 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG--SLQNLIILRLKSNNFHG 645
            L  N+L       L N   L  L L +N +       +     L+ L  L L+ N    
Sbjct: 74  FLNGNKLTDI--KPLANLKNLGWLFLDENKV-----KDLSSLKDLKKLKSLSLEHNGIS- 125

Query: 646 NIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIY 705
           +I   L HL  ++ L L  N I        +  S + +                      
Sbjct: 126 DING-LVHLPQLESLYLGNNKI-----TDITVLSRLTK---------------------- 157

Query: 706 YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNL 765
                                    +  L L  N++ + +P  +  L  L  L LS+N++
Sbjct: 158 -------------------------LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

Query: 766 TGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813
           + L    +  LK+LD L+L          +  S L   + +  +  SL
Sbjct: 191 SDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 55/282 (19%), Positives = 105/282 (37%), Gaps = 35/282 (12%)

Query: 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNN 525
           + I  ++    ++D +     +L+  +  +  +N+ I   +  +  L +    + ++ N 
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELN-SIDQIIANNSDIK-SVQGIQYLPNV-TKLFLNGNK 79

Query: 526 FDGPIPPLPSNS--TFLNLSKNK---FSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGF 580
               I PL +     +L L +NK    S L D       L  L+L +N  S  I + +  
Sbjct: 80  LTD-IKPLANLKNLGWLFLDENKVKDLSSLKDL----KKLKSLSLEHNGIS-DI-NGLVH 132

Query: 581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG--SLQNLIILRL 638
           L  +++L L NN++     + L   +KL  L L  N +     + +     L  L  L L
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI-----SDIVPLAGLTKLQNLYL 185

Query: 639 KSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEIL 698
             N+   ++   L  L  + VL+L       K     SN  +          +   +  L
Sbjct: 186 SKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVP-------NTVKNTDGSL 236

Query: 699 VVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNK 740
           V P  I      +   + W   E   + +  F + + +   K
Sbjct: 237 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAK 278

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 39/215 (18%), Positives = 79/215 (36%), Gaps = 41/215 (19%)

Query: 600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQV 659
            S    ++    +L+K ++   V       L ++  +   +++   ++   + +L  +  
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIK-SVQG-IQYLPNVTK 72

Query: 660 LDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKG 719
           L L+ N ++  I    +  ++       N +  L++            + L  +      
Sbjct: 73  LFLNGNKLT-DIKPLANLKNLGWLFLDENKVKDLSS-----------LKDLKKL------ 114

Query: 720 SEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL 779
                       K L L  N + +     +  L  L +L L  N +T +    + +L  L
Sbjct: 115 ------------KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKL 158

Query: 780 DFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           D L L  N  S +I   L+ L+ L  L LS N +S
Sbjct: 159 DTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 55/240 (22%)

Query: 581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG--SLQNLIILRL 638
                  +L+   +      +    + +  +    + +       V G   L N+  L L
Sbjct: 23  FAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDI-----KSVQGIQYLPNVTKLFL 75

Query: 639 KSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ----EKSSNPIIGLA 694
            + N   +I   L +L  +  L L  N +        S+   + +        N I  + 
Sbjct: 76  -NGNKLTDI-KPLANLKNLGWLFLDENKVK-----DLSSLKDLKKLKSLSLEHNGISDIN 128

Query: 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG 754
                         +L  +                  + L L +NK+ +     ++ L  
Sbjct: 129 G-----------LVHLPQL------------------ESLYLGNNKITD--ITVLSRLTK 157

Query: 755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           L  L+L  N ++ ++P  +  L  L  L LS+NH S ++  +L+ L  L VL+L      
Sbjct: 158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECL 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 14/218 (6%)

Query: 188 SSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETL 246
            S ++LDLS   L    S  F        L+ L L  C +  I       +   + + TL
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTL 81

Query: 247 DLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNEL-E 304
            L+ N +   S+    F+   ++  L     +L  S+      H+ +L+ L++A N +  
Sbjct: 82  ILTGNPI--QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138

Query: 305 GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDL 364
             +P++F N+ +L  L L  NK+       ++ L     + +L  L L  N +    P  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM-PLLNLS-LDLSLNPMNFIQPGA 196

Query: 365 GRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGN 402
            + + LK L L  N L    +     L  L+ + L  N
Sbjct: 197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 57/250 (22%), Positives = 89/250 (35%), Gaps = 34/250 (13%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLL 296
           NL  S + LDLS N L    +  + F     +  LDL    +Q +I + A+Q +  L  L
Sbjct: 25  NLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTL 81

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
            L  N ++      F  + SL +L      L+   +  I +L       +L+ L +  N 
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNL 135

Query: 357 ITGPIPDLGRFLS---LKVLKLGENHLNGTINKSLSHLFKLE----TLSLDGNSFTGVIS 409
           I         F +   L+ L L  N +       L  L ++     +L L  N     I 
Sbjct: 136 IQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQ 193

Query: 410 ETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQ----LKWLSLA------SCKMGPHFPN 459
              F  +  L+ L L  N L   +       F     L+ + L       SC    +   
Sbjct: 194 PGAFKEI-RLKELALDTNQLK-SVPDG---IFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 248

Query: 460 WLQTQNQLIS 469
           WL   +Q   
Sbjct: 249 WLNKNSQKEQ 258

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 66/297 (22%), Positives = 109/297 (36%), Gaps = 65/297 (21%)

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
           NL  +  +LDL FN L+     +F     L++L L+  E++      + ++  L+ L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT 383
            N +        Q+L+ G       GL                  SL+ L   E +L   
Sbjct: 85  GNPI--------QSLALGA----FSGLS-----------------SLQKLVAVETNLASL 115

Query: 384 INKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQL 443
            N  + HL  L+ L++  N         +FSN++NL+ L L+ N +   +          
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT------- 167

Query: 444 KWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS 503
                             Q     +SLD+S   ++   P  F ++   L  L L  N + 
Sbjct: 168 ------------DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--LKELALDTNQLK 213

Query: 504 ----GKLPDLSVLKSDDIVIDISSNNFD---GPIPPLPSNSTFLNLSKNKFSGLPDC 553
               G    L+ L+     I + +N +D     I  L   S +LN +  K  G   C
Sbjct: 214 SVPDGIFDRLTSLQK----IWLHTNPWDCSCPRIDYL---SRWLNKNSQKEQGSAKC 263

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.1 bits (162), Expect = 7e-12
 Identities = 55/264 (20%), Positives = 83/264 (31%), Gaps = 57/264 (21%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQ 585
           IP  LP ++  L+LS N    L    + +F  L +L+L+       I D   +  L ++ 
Sbjct: 22  IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGA-YQSLSHLS 79

Query: 586 TLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG 645
           TL L  N +      +    S L+ L   +  L   +     G L+ L  L +  N    
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ- 137

Query: 646 NIPFQ--LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGY 703
           +        +L  ++ LDLS N I              I                     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQ------------SIYCTD----------------- 168

Query: 704 IYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRN 763
               R L    +                  LDLS N +   I       + L  L L  N
Sbjct: 169 ---LRVLHQ--MPLLNLS------------LDLSLNPM-NFIQPGAFKEIRLKELALDTN 210

Query: 764 NLTGLIPPKIGQLKSLDFLDLSRN 787
            L  +      +L SL  + L  N
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 53/252 (21%), Positives = 87/252 (34%), Gaps = 51/252 (20%)

Query: 346 SLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSF 404
           S + L L  N +          F  L+VL L    +    + +   L  L TL L GN  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 405 TGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF----QLKWLSLASCKMGPHFPNW 460
              ++   FS +S+LQ L   + +L   L +           LK L++A           
Sbjct: 89  Q-SLALGAFSGLSSLQKLVAVETNLA-SLENF---PIGHLKTLKELNVA----------- 132

Query: 461 LQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVID 520
               N + S           +P++F +L+  L  L+LS+N I                  
Sbjct: 133 ---HNLIQSF---------KLPEYFSNLT-NLEHLDLSSNKIQ----------------S 163

Query: 521 ISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGF 580
           I   +    +  +P  +  L+LS N  + +         L  L L  N+           
Sbjct: 164 IYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 581 LHNIQTLSLRNN 592
           L ++Q + L  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 27/180 (15%)

Query: 185 SHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSI 243
             LS L  L L+   +   +   F   S L SL+ LV     L  +            ++
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAF---SGLSSLQKLVAVETNLASLENF---PIGHLKTL 126

Query: 244 ETLDLSDNHL---PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRL---- 295
           + L+++ N +        +  L NL     HLDL  N +Q SI     + +  + L    
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLE----HLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 181

Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAN 355
           L L+ N +    P  F  +  L +L L  N+L      +   L+      SL+ + L+ N
Sbjct: 182 LDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLT------SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 31/191 (16%)

Query: 112 KLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPH-PFRDLSGFEYFNV 170
            L  L  L L+ N      +  F G LS L+ L     T  + + + P   L   +  NV
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAV-ETNLASLENFPIGHLKTLKELNV 131

Query: 171 ENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPIN 230
            ++ + S    E  S+L++L HLDLS  N            ++ S+    LR        
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSS-N------------KIQSIYCTDLRV------- 171

Query: 231 PSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHM 290
                L  +     +LDLS N +  + + P  F     +  L L  N L+      F  +
Sbjct: 172 -----LHQMPLLNLSLDLSLNPM--NFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRL 223

Query: 291 VSLRLLSLASN 301
            SL+ + L +N
Sbjct: 224 TSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 9/121 (7%)

Query: 728 LGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSR 786
           L  +  L L+ N + +++     + L  L  L     NL  L    IG LK+L  L+++ 
Sbjct: 75  LSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 787 NHF-SGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG-----TQLQSFNASVYAGNLELCGL 840
           N   S  +P   S L+ L  LDLS N +   I         Q+   N S+      +  +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 841 P 841
            
Sbjct: 193 Q 193

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 53/238 (22%), Positives = 83/238 (34%), Gaps = 41/238 (17%)

Query: 583 NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN- 641
           + + L L  N L      S  +  +L+VLDL +  +   +      SL +L  L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNP 87

Query: 642 --NFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLAN-EIL 698
             +        L  L   Q L     N++  +               + PI  L   + L
Sbjct: 88  IQSLALGAFSGLSSL---QKLVAVETNLA-SLE--------------NFPIGHLKTLKEL 129

Query: 699 VVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITD-LVGLTA 757
                      + + L+       EY S L  +++LDLSSNK+ ++I       L  +  
Sbjct: 130 ----------NVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPL 177

Query: 758 ----LNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN 811
               L+LS N +   I P   +   L  L L  N            L+ L  + L  N
Sbjct: 178 LNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 732 KYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHF 789
           + LDLS  ++ + I +     L  L+ L L+ N +   +       L SL  L     + 
Sbjct: 55  QVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112

Query: 790 SGNIPSSL-SLLSGLSVLDLSYNSLS 814
           + ++ +     L  L  L++++N + 
Sbjct: 113 A-SLENFPIGHLKTLKELNVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 46/261 (17%), Positives = 90/261 (34%), Gaps = 66/261 (25%)

Query: 417 SNLQMLFLADNSLTLKLSHDWVPAF----QLKWLSLASCKMGPHFPNWLQTQNQLISLDI 472
            + + L L+ N L   L      +F    +L+ L L+                ++ +++ 
Sbjct: 28  FSTKNLDLSFNPLR-HLGSY---SFFSFPELQVLDLSR--------------CEIQTIE- 68

Query: 473 SNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP 532
                       +  LS  L  L L+ N I                  ++   F G    
Sbjct: 69  ---------DGAYQSLS-HLSTLILTGNPIQ----------------SLALGAFSGL--- 99

Query: 533 LPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLSL 589
             S+   L   +   + L +  + +  +L  LN+A+N           F  L N++ L L
Sbjct: 100 --SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDL 156

Query: 590 RNNRLNGELPSSLKNCSKLRV----LDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG 645
            +N++     + L+   ++ +    LDL  N +   +       ++ L  L L +N    
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIR-LKELALDTNQLK- 213

Query: 646 NIPFQ-LCHLAFIQVLDLSLN 665
           ++P      L  +Q + L  N
Sbjct: 214 SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHFS 790
           K LDLS N L             L  L+LSR  +   I       L  L  L L+ N   
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQ 89

Query: 791 GNIPSSL-SLLSGLSVLDLSYNSLS 814
            ++     S LS L  L     +L+
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLA 113

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 69/346 (19%), Positives = 128/346 (36%), Gaps = 62/346 (17%)

Query: 236 LFNLS--TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSL 293
           +F      +   +    +++  +     L  ++     L      +  +I E  Q++ +L
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQADLDGIT----TLSAFGTGVT-TI-EGVQYLNNL 65

Query: 294 RLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLY 353
             L L  N++    P    N+  + +L L  N         ++N+S+   + S++ L L 
Sbjct: 66  IGLELKDNQITDLAP--LKNLTKITELELSGNP--------LKNVSAIAGLQSIKTLDLT 115

Query: 354 ANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFF 413
           +  IT  +  L    +L+VL L  N +  T    L+ L  L+ LS+     + +   T  
Sbjct: 116 STQITD-VTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDL---TPL 169

Query: 414 SNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDIS 473
           +N+S L  L   DN ++  +S                          L +   LI + + 
Sbjct: 170 ANLSKLTTLKADDNKIS-DISP-------------------------LASLPNLIEVHLK 203

Query: 474 NIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL 533
           N  ISD  P    + S  LF + L+N  I+    +  V  ++++V+        G     
Sbjct: 204 NNQISDVSP--LANTS-NLFIVTLTNQTIT----NQPVFYNNNLVVPNVVKGPSGAPIAP 256

Query: 534 PSNS-----TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKI 574
            + S        NL+ N  S + +    FN           FSG +
Sbjct: 257 ATISDNGTYASPNLTWNLTSFINNVSYTFNQSVTFKNTTVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 54/331 (16%), Positives = 107/331 (32%), Gaps = 66/331 (19%)

Query: 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSG 164
            I P    L     +   K++            L  +  L+       + +      + G
Sbjct: 11  VIFP-DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAF----GTGV----TTIEG 58

Query: 165 FEYF-NVENSNLFS--VGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVL 221
            +Y  N+    L    +  L  L +L+ +  L+LS   L            + ++  L  
Sbjct: 59  VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN----------VSAIAGL-- 106

Query: 222 RSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG 281
                               SI+TLDL+   +   +    L NL      L L  N +  
Sbjct: 107 -------------------QSIKTLDLTSTQITDVTPLAGLSNLQ----VLYLDLNQI-- 141

Query: 282 SIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSG 341
           +       + +L+ LS+ + ++    P    N+  L  L    NK+S        ++S  
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS--------DISPL 191

Query: 342 CTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG 401
            ++ +L  + L  N I+  +  L    +L ++ L    +    N+ + +   L   ++  
Sbjct: 192 ASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPNVVK 247

Query: 402 NSFTGVISETFFSNMSNLQMLFLADNSLTLK 432
                 I+    S+        L  N  +  
Sbjct: 248 GPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 51/257 (19%), Positives = 85/257 (33%), Gaps = 57/257 (22%)

Query: 581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG--SLQNLIILRL 638
           L N   ++   + +      +  +   +  L      +     T + G   L NLI L L
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-----TTIEGVQYLNNLIGLEL 70

Query: 639 KSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK----SSNPIIGLA 694
           K N    ++   L +L  I  L+LS N +        S  + +   K    +S  I  + 
Sbjct: 71  KDNQIT-DLAP-LKNLTKITELELSGNPLKN-----VSAIAGLQSIKTLDLTSTQITDVT 123

Query: 695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG 754
                          L N                  ++ L L  N++    P  +  L  
Sbjct: 124 P-----------LAGLSN------------------LQVLYLDLNQITNISP--LAGLTN 152

Query: 755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           L  L++    ++ L P  +  L  L  L    N  S +I S L+ L  L  + L  N +S
Sbjct: 153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS-DI-SPLASLPNLIEVHLKNNQIS 208

Query: 815 GKIPLG--TQLQSFNAS 829
              PL   + L     +
Sbjct: 209 DVSPLANTSNLFIVTLT 225

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 52/290 (17%), Positives = 103/290 (35%), Gaps = 54/290 (18%)

Query: 530 IPPLPS--NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
           I P P+  N+  +   K+  +       + + ++ L+      +  I   + +L+N+  L
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGL 68

Query: 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI 647
            L++N++     + LKN +K+  L+L  N L           LQ++  L L S       
Sbjct: 69  ELKDNQITD--LAPLKNLTKITELELSGNPLKNVSAI---AGLQSIKTLDLTSTQITDVT 123

Query: 648 PFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK----SSNPIIGLANEILVVPGY 703
           P  L  L+ +QVL L LN I+       S  + +   +     +  +  L          
Sbjct: 124 P--LAGLSNLQVLYLDLNQITN-----ISPLAGLTNLQYLSIGNAQVSDLTP-------- 168

Query: 704 IYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRN 763
                 L N               L  +  L    NK+ +     +  L  L  ++L  N
Sbjct: 169 ------LAN---------------LSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNN 205

Query: 764 NLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813
            ++ + P  +    +L  + L+    +       + L   +V+     + 
Sbjct: 206 QISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 18/205 (8%)

Query: 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNN 525
             I +      ++DT+     DL   +  L+     ++  +  +  L +  I +++  N 
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLD-GITTLSAFGTGVT-TIEGVQYLNNL-IGLELKDNQ 74

Query: 526 FDGPIPPLPSNS--TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHN 583
               + PL + +  T L LS N    +        S+  L+L + + +   P  +  L N
Sbjct: 75  ITD-LAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSN 130

Query: 584 IQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF 643
           +Q L L  N++     S L   + L+ L +    +    P     +L  L  L+   N  
Sbjct: 131 LQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTPL---ANLSKLTTLKADDNKI 185

Query: 644 HGNIPFQLCHLAFIQVLDLSLNNIS 668
             +I   L  L  +  + L  N IS
Sbjct: 186 S-DISP-LASLPNLIEVHLKNNQIS 208

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 53/251 (21%), Positives = 89/251 (35%), Gaps = 30/251 (11%)

Query: 367 FLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD 426
             +   L+     L      + S    LE + +  N    VI    FSN+  L  + +  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 427 -NSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPN-WLQTQNQLISLDIS-NIGISDTIPD 483
            N+L       +     L++L +++  +  H P+       Q + LDI  NI I     +
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 484 WFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLS 543
            F  LS E   L L+ N I                 +I ++ F+G               
Sbjct: 148 SFVGLSFESVILWLNKNGIQ----------------EIHNSAFNG-----TQLDELNLSD 186

Query: 544 KNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSL 602
            N    LP D +   +   IL+++  R    +P     L N++ L  R+     +LP +L
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLP-TL 242

Query: 603 KNCSKLRVLDL 613
           +    L    L
Sbjct: 243 EKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 2e-13
 Identities = 46/267 (17%), Positives = 94/267 (35%), Gaps = 28/267 (10%)

Query: 242 SIETLDLSDNHL---PSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSL 298
           S       ++ +   PS        +L RN + L      L+     AF     L  + +
Sbjct: 10  SNRVFLCQESKVTEIPS--------DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61

Query: 299 ASNELEGGIPKF-FGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI 357
           + N++   I    F N+  L+++ + +      L  +           +L+ L +    I
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKAN---NLLYINPEAFQNLP--NLQYLLISNTGI 116

Query: 358 TGPIPDLGRF--LSLKVLKLGENHLNGTI-NKSLSHL-FKLETLSLDGNSFTGVISETFF 413
              +PD+ +   L   +L + +N    TI   S   L F+   L L+ N     I  + F
Sbjct: 117 KH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF 174

Query: 414 SNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDIS 473
           +     ++    +N+L    +  +  A     L ++  ++       L+   +L +    
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 474 NIGISDTIPDWFWDLSIELFFLNLSNN 500
           N+     +P     L   L   +L+  
Sbjct: 235 NL---KKLP-TLEKLV-ALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 56/323 (17%), Positives = 103/323 (31%), Gaps = 49/323 (15%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSM-GFLHNIQT 586
           IP  LP N+  L     K   +    +  F  L  + ++ N     I   +   L  +  
Sbjct: 24  IPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83

Query: 587 LSLRN-NRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG 645
           + +   N L    P + +N   L+ L +    +   +P          ++L ++ N    
Sbjct: 84  IRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 646 NIP---FQ-LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVP 701
            I    F  L       +L L+ N I       F+   +     S N      N +  +P
Sbjct: 143 TIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDN------NNLEELP 194

Query: 702 GYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNL 760
             +  F                          LD+S  ++  ++P     +L  L A + 
Sbjct: 195 NDV--FHGASG------------------PVILDISRTRI-HSLPSYGLENLKKLRARST 233

Query: 761 SRNNLTGLIPPKIGQLKSLDFLDLSRN-HFSGNIP-----SSLSLLSGLSVLDLSYNSLS 814
              NL  L   +  +L +L    L+   H           S L  +   S+L    + ++
Sbjct: 234 --YNLKKLPTLE--KLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMT 289

Query: 815 GKIPLGTQLQSFNASVYAGNLEL 837
                 + L   N S Y+   ++
Sbjct: 290 QARGQRSSLAEDNESSYSRGFDM 312

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 15/220 (6%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIP-HPFRDLSGFEY 167
           A      L  +++S+ND       +   +L KL  + +        I    F++L   +Y
Sbjct: 49  AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108

Query: 168 FNVENSNLFSVGSLERLSHLSSLRHLDLSC-INLTK-SSDWFQVVSQLHSLKTLVLRSCY 225
             + N+ +  +  +    H      LD+   IN+     + F  +S       L L    
Sbjct: 109 LLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE--SVILWLNKNG 165

Query: 226 LPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE 285
           +  I+ S    FN +   E     +N+L    +   +F+ +   + LD+    +      
Sbjct: 166 IQEIHNS---AFNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 286 AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
             +++  LR  S  + +    +P     + +L +  L   
Sbjct: 221 GLENLKKLRARSTYNLKK---LPTLE-KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 6e-09
 Identities = 43/258 (16%), Positives = 77/258 (29%), Gaps = 34/258 (13%)

Query: 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
           S  +     ++ + +IP       N   L     +L      +      L  +++ +N +
Sbjct: 10  SNRVFLCQESKVT-EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 619 FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLC-HLAFIQVLDLSLNNISGKIPK--CF 675
              +   V  +L  L  +R++  N    I  +   +L  +Q L +S   I   +P     
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLD 735
            +   ++ +   N        I  +      F  L                       L 
Sbjct: 126 HSLQKVLLDIQDN------INIHTIERNS--FVGLSFES-----------------VILW 160

Query: 736 LSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHFSGNIP 794
           L+ N + + I     +   L  LNLS NN    +P  +         LD+SR        
Sbjct: 161 LNKNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 795 SSLSLLSGLSVLDLSYNS 812
             L  L  L         
Sbjct: 220 YGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 36/220 (16%), Positives = 75/220 (34%), Gaps = 35/220 (15%)

Query: 599 PSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQ 658
              + +CS  RV   +++ +  E+P+      +N I LR                   ++
Sbjct: 3   HHRICHCS-NRVFLCQESKV-TEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 57

Query: 659 VLDLSLNNISGKIPK-CFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTW 717
            +++S N++   I    FSN   + + +        AN +L +      F+ L N+    
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEK-----ANNLLYINPEA--FQNLPNL---- 106

Query: 718 KGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKI--G 774
                         +YL +S+  + + +P+      +    L++  N     I      G
Sbjct: 107 --------------QYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
                  L L++N       S+ +      +     N+L 
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 47/176 (26%), Positives = 67/176 (38%), Gaps = 17/176 (9%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYP-WLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRL 295
           +L +    LDLS N+L  S +   W      N+  L L  NHL   I   AF  + +LR 
Sbjct: 36  SLPSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRY 92

Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAN 355
           L L+SN L       F ++ +L  L L  N +        ++++       L+ L L  N
Sbjct: 93  LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA------QLQKLYLSQN 146

Query: 356 DIT----GPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKL--ETLSLDGNSFT 405
            I+      I D  +   L +L L  N L       L  L       L L  N   
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 45/223 (20%), Positives = 72/223 (32%), Gaps = 40/223 (17%)

Query: 264 NLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYL 322
           +L      LDL  N+L     E     + +L  L L+ N L     + F  + +L  L L
Sbjct: 36  SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 323 PRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG 382
             N L          L           L                  +L+VL L  NH+  
Sbjct: 96  SSNHL--------HTLDEF----LFSDL-----------------QALEVLLLYNNHIVV 126

Query: 383 TINKSLSHLFKLETLSLDGNSFTGVISETF--FSNMSNLQMLFLADNSLTL--KLSHDWV 438
               +   + +L+ L L  N  +    E     + +  L +L L+ N L          +
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

Query: 439 PAFQLKWLSLA------SCKMGPHFPNWLQTQNQLISLDISNI 475
           PA+    L L        CK+   F +W   Q   +     ++
Sbjct: 187 PAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDL 229

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 14/172 (8%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLPDCWL--NFNSLSILNLANNRFSGKIPDSM-GFLHNIQ 585
           +P  LPS +  L+LS N  S L   W      +L  L L++N  +  I       + N++
Sbjct: 33  VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLR 91

Query: 586 TLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG 645
            L L +N L+        +   L VL L  N +   V       +  L  L L  N    
Sbjct: 92  YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS- 149

Query: 646 NIPFQ----LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK---SSNPI 690
             P +       L  + +LDLS N +              ++      +NP+
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 49/212 (23%), Positives = 74/212 (34%), Gaps = 60/212 (28%)

Query: 394 LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF----QLKWLSLA 449
              L L  N+ + + +E   + ++NL  L L+ N L   +S +   AF     L++L L+
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSE---AFVPVPNLRYLDLS 96

Query: 450 SCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDL 509
           S              N L +LD             F DL   L  L L NNHI       
Sbjct: 97  S--------------NHLHTLD----------EFLFSDLQ-ALEVLLLYNNHIV------ 125

Query: 510 SVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP----DCWLNFNSLSILNL 565
                      +  N F+     +      L LS+N+ S  P            L +L+L
Sbjct: 126 ----------VVDRNAFED----MA-QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170

Query: 566 ANNRFSGKIPDSMGFLHNI--QTLSLRNNRLN 595
           ++N+        +  L       L L NN L 
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 732 KYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHF 789
           +YLDLSSN L   + E + +DL  L  L L  N++  ++       +  L  L LS+N  
Sbjct: 91  RYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI 148

Query: 790 SGNIP----SSLSLLSGLSVLDLSYNSLSGKIPLGT 821
           S   P       + L  L +LDLS N L  K+PL  
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTD 182

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 731 VKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNH 788
              LDLS N L     E   T L  L +L LS N+L   I  +    + +L +LDLS NH
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 789 FSGNIPS-SLSLLSGLSVLDLSYNSLSGKIPLGT 821
               +     S L  L VL L  N +   +    
Sbjct: 100 LH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNA 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 37/163 (22%), Positives = 70/163 (42%), Gaps = 21/163 (12%)

Query: 518 VIDISSNNFDGPIPPLPSNSTF--------LNLSKNKFSGLP-DCWLNFNSLSILNLANN 568
           ++D+S NN    +  L +  T         L LS N  + +  + ++   +L  L+L++N
Sbjct: 43  LLDLSHNN----LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 569 RFSGKIPDSMGF--LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCV 626
                + + + F  L  ++ L L NN +     ++ ++ ++L+ L L +N +    P  +
Sbjct: 99  HLH-TLDEFL-FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

Query: 627 ---GGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNN 666
              G  L  L++L L SN         L  L       L L+N
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 728 LGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSR 786
           L  +  L LS N L   I  E    +  L  L+LS N+L  L       L++L+ L L  
Sbjct: 63  LTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 787 NHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
           NH      ++   ++ L  L LS N +S + P+  
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 114 RGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENS 173
                LDLS N+            L+ L  L LS    +      F  +    Y ++ ++
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 174 NLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLPPINP- 231
           +L ++      S L +L  L L   ++     + F     +  L+ L L    +      
Sbjct: 99  HLHTLDE-FLFSDLQALEVLLLYNNHIVVVDRNAF---EDMAQLQKLYLSQNQISRFPVE 154

Query: 232 SFIWLFNLSTSIETLDLSDNHLPS--SSVYPWLFNLSRNILHLD 273
                  L   +  LDLS N L     +    L    +N L+L 
Sbjct: 155 LIKDGNKL-PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 42/219 (19%), Positives = 66/219 (30%), Gaps = 68/219 (31%)

Query: 583 NIQTLSLRNNRLNGELPS--SLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS 640
               L L +N L   L +  +    + L  L L  N L   + +     + NL  L L S
Sbjct: 40  YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS 97

Query: 641 NNFHGNIP---FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEI 697
           N+ H  +    F    L  ++VL L  N+I       F +                    
Sbjct: 98  NHLH-TLDEFLFS--DLQALEVLLLYNNHIVVVDRNAFED-------------------- 134

Query: 698 LVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI----TDLV 753
                                         +  ++ L LS N++    P E+      L 
Sbjct: 135 ------------------------------MAQLQKLYLSQNQI-SRFPVELIKDGNKLP 163

Query: 754 GLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792
            L  L+LS N L  L    + +L +     L   +   N
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL---YLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 732 KYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIP---PKIGQLKSLDFLDLSRN 787
           + L L +N +   +      D+  L  L LS+N ++           +L  L  LDLS N
Sbjct: 115 EVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173

Query: 788 HFSGNIPSSLSLLSGLSVLDLS 809
                  + L  L       L 
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 734 LDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHFSGN 792
           L  S  +L   +P+ +        L+LS NNL+ L       +L +L  L LS NH +  
Sbjct: 23  LSCSKQQL-PNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-F 78

Query: 793 IPS-SLSLLSGLSVLDLSYNSLSGKIPLGT 821
           I S +   +  L  LDLS N L   +    
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHLH-TLDEFL 107

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 32/198 (16%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYF 168
           A + +  LR+LDLS N         F   L  L  L L        +             
Sbjct: 83  AFVPVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLY-NNHIVVVDR----------- 129

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLP 227
                N F          ++ L+ L LS   +++   +  +  ++L  L  L L S  L 
Sbjct: 130 -----NAF--------EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 228 PINP-SFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFN--LSRNILHLDLGFNHLQGSIP 284
            +       L         L L +N L        LF+    R +  +      L     
Sbjct: 177 KLPLTDLQKLPAWVK--NGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHS 234

Query: 285 EAFQHMVSLRLLSLASNE 302
           +   ++ SL   + +  +
Sbjct: 235 KKLHNIFSLDFFNCSEYK 252

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLL 296
           N+    + LDL  N L  SS+    F+    +  L L  N LQ ++P   F+ + +L  L
Sbjct: 34  NIPADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGC--TVNSLEGLCLYA 354
            +  N+L+      F  + +L +L L RN+        +++L      ++  L  L L  
Sbjct: 91  WVTDNKLQALPIGVFDQLVNLAELRLDRNQ--------LKSLPPRVFDSLTKLTYLSLGY 142

Query: 355 NDITGPIPDLGRF---LSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISET 411
           N++   +P  G F    SLK L+L  N L      +   L +L+TL LD N     + E 
Sbjct: 143 NELQS-LPK-GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEG 199

Query: 412 FFSNMSNLQMLFLADN 427
            F ++  L+ML L +N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 48/167 (28%), Positives = 67/167 (40%), Gaps = 22/167 (13%)

Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
           LDL  N L     +AF  +  LRLL L  N+L+      F  + +L  L++  NKL    
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLS---LKVLKLGENHLNGTINKSL 388
             +   L       +L  L L  N +   +P    F S   L  L LG N L     +SL
Sbjct: 102 IGVFDQLV------NLAELRLDRNQLKS-LPP-RVFDSLTKLTYLSLGYNEL-----QSL 148

Query: 389 SH-----LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
                  L  L+ L L  N     + E  F  ++ L+ L L +N L 
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 9/142 (6%)

Query: 185 SHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIE 244
             L +L  L ++   L        V  QL +L  L L    L  + P    +F+  T + 
Sbjct: 82  KELKNLETLWVTDNKLQALPI--GVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLT 136

Query: 245 TLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNEL 303
            L L  N L   S+   +F+   ++  L L  N L+  +PE AF  +  L+ L L +N+L
Sbjct: 137 YLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193

Query: 304 EGGIPKFFGNMCSLNQLYLPRN 325
           +      F ++  L  L L  N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 50/230 (21%), Positives = 81/230 (35%), Gaps = 60/230 (26%)

Query: 394 LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF----QLKWLSLA 449
            + L L  N  +  +    F  ++ L++L+L DN L   L       F     L+ L + 
Sbjct: 39  TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAG---IFKELKNLETLWVT 93

Query: 450 SCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDL 509
                          N+L +L              F  L   L  L L  N +       
Sbjct: 94  D--------------NKLQALP----------IGVFDQLV-NLAELRLDRNQLK------ 122

Query: 510 SVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLS---ILNLA 566
                      +    FD     L +  T+L+L  N+   LP     F+ L+    L L 
Sbjct: 123 ----------SLPPRVFDS----L-TKLTYLSLGYNELQSLPK--GVFDKLTSLKELRLY 165

Query: 567 NNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
           NN+       +   L  ++TL L NN+L      +  +  KL++L L++N
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 15/147 (10%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQ 585
           IP  +P+++  L+L  NK S LP   +     L +L L +N+    +P  + F  L N++
Sbjct: 31  IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI-FKELKNLE 88

Query: 586 TLSLRNNRLNGELPSSL-KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
           TL + +N+L   LP  +      L  L L +N L   +P  V  SL  L  L L  N   
Sbjct: 89  TLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 645 GNIP---FQLCHLAFIQVLDLSLNNIS 668
            ++P   F    L  ++ L L  N + 
Sbjct: 147 -SLPKGVFD--KLTSLKELRLYNNQLK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 50/233 (21%), Positives = 78/233 (33%), Gaps = 59/233 (25%)

Query: 583 NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNN 642
           + + L L++N+L+     +    +KLR+L L  N L   +P  +   L+NL  L +  N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK 96

Query: 643 FH---GNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV 699
                  +  QL +L     L L  N +    P+ F                 L      
Sbjct: 97  LQALPIGVFDQLVNL---AELRLDRNQLKSLPPRVFD---------------SLTK---- 134

Query: 700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITD-LVGLTAL 758
                          LT+                L L  N+L +++P+ + D L  L  L
Sbjct: 135 ---------------LTY----------------LSLGYNEL-QSLPKGVFDKLTSLKEL 162

Query: 759 NLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN 811
            L  N L  +      +L  L  L L  N        +   L  L +L L  N
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 732 KYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHF 789
           + L ++ NKL +A+P  +   LV L  L L RN L  L PP++   L  L +L L  N  
Sbjct: 88  ETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNEL 145

Query: 790 SGNIPSSL-SLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPN 844
             ++P  +   L+ L  L L  N          QL+      +    EL  L L N
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNN----------QLKRVPEGAFDKLTELKTLKLDN 190

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 732 KYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHF 789
             L L  N+L +++P  +   L  LT L+L  N L  L P  +  +L SL  L L  N  
Sbjct: 112 AELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRLYNNQL 169

Query: 790 SGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
                 +   L+ L  L L  N L  ++P G 
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
           + L +    +       ++ L  LT L++S +     I  KI  L  ++ +DLS N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 792 NIPSSLSLLSGLSVLDLSYNSLSGKIPLG--TQLQSFNAS 829
           +I   L  L  L  L++ ++ +     +    +L    A 
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 13/143 (9%)

Query: 289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLE 348
            M SL  ++LA+  +            ++  L +     +         +S    +++LE
Sbjct: 42  QMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN-----YNPISG---LSNLE 91

Query: 349 GLCLYANDITG-PIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGV 407
            L +   D+T   IP+L    SL +L +  +  + +I   ++ L K+ ++ L  N     
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 408 ISETFFSNMSNLQMLFLADNSLT 430
           I       +  L+ L +  + + 
Sbjct: 152 IMP--LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 17/172 (9%)

Query: 211 SQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNIL 270
           +Q++SL  + L +  +  +      +     +I+ L +++ H  + +    +  LS N+ 
Sbjct: 41  AQMNSLTYITLANINVTDLTG----IEYA-HNIKDLTINNIHATNYNP---ISGLS-NLE 91

Query: 271 HLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQ 330
            L +    +          + SL LL ++ +  +  I      +  +N + L  N     
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151

Query: 331 LSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG 382
           +  L + L        L+ L +  + +      +  F  L  L      + G
Sbjct: 152 IMPL-KTLP------ELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 21/204 (10%), Positives = 63/204 (30%), Gaps = 32/204 (15%)

Query: 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNN 525
             ++  +     ++        ++  L ++ L+N +++  L  +                
Sbjct: 24  AYLNGLLGQSSTANITEA---QMN-SLTYITLANINVT-DLTGIEYAH------------ 66

Query: 526 FDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQ 585
                     N   L ++    +         ++L  L +     +     ++  L ++ 
Sbjct: 67  ----------NIKDLTINNIHATNYNPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115

Query: 586 TLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG 645
            L + ++  +  + + +    K+  +DL  N    ++      +L  L  L ++ +  H 
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVHD 173

Query: 646 NIPFQLCHLAFIQVLDLSLNNISG 669
               +      +  L      I G
Sbjct: 174 YRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 6e-10
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
           K L +++       P  I+ L  L  L +   ++T    P +  L SL  LD+S +    
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 792 NIPSSLSLLSGLSVLDLSYNSLSGKI-PLG--TQLQSFNAS 829
           +I + ++ L  ++ +DLSYN     I PL    +L+S N  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ 167

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 31/175 (17%), Positives = 69/175 (39%), Gaps = 20/175 (11%)

Query: 185 SHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIE 244
           + ++SL ++ L+ IN+T  +     +   H++K L + + +    NP    +  L +++E
Sbjct: 41  AQMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNIHATNYNP----ISGL-SNLE 91

Query: 245 TLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELE 304
            L +    + S  +   L  L+ ++  LD+  +    SI      +  +  + L+ N   
Sbjct: 92  RLRIMGKDVTSDKIPN-LSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 305 GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG 359
             I      +  L  L +  + +       I++         L  L  ++  I G
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGVHD--YRGIEDFP------KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 38/217 (17%), Positives = 66/217 (30%), Gaps = 43/217 (19%)

Query: 361 IPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQ 420
           IPD     + K    G    + T N + + +  L  ++L   + T +   T      N++
Sbjct: 17  IPDS----TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL---TGIEYAHNIK 69

Query: 421 MLFLADNSLT-----LKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNI 475
            L + +   T       LS        L+ L +    +       L     L  LDIS+ 
Sbjct: 70  DLTINNIHATNYNPISGLS-------NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 476 GISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPS 535
              D+I      L  ++  ++LS N     +  L  L                       
Sbjct: 123 AHDDSILTKINTLP-KVNSIDLSYNGAITDIMPLKTLP---------------------- 159

Query: 536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSG 572
               LN+  +          +F  L+ L   +    G
Sbjct: 160 ELKSLNIQFDGVHDYRGIE-DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
             LD+S +   ++I  +I  L  + +++LS N     I P +  L  L  L++  +    
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH- 172

Query: 792 NIPSSLSLLSGLSVLDLSYNSLSG 815
           +    +     L+ L     ++ G
Sbjct: 173 DY-RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790
           + Y+ L++  + +     I     +  L ++  + T   P  I  L +L+ L +     +
Sbjct: 46  LTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 791 GNIPSSLSLLSGLSVLDLSYNSLSGKIP 818
            +   +LS L+ L++LD+S+++    I 
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSIL 129

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 7/132 (5%)

Query: 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
             L ++  + + +     NSL+ + LAN   +  +   + + HNI+ L++ N        
Sbjct: 28  GLLGQSSTANITE--AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATN--Y 81

Query: 600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQV 659
           + +   S L  L +    +  +    + G L +L +L +  +    +I  ++  L  +  
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 660 LDLSLNNISGKI 671
           +DLS N     I
Sbjct: 141 IDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 33/236 (13%), Positives = 66/236 (27%), Gaps = 61/236 (25%)

Query: 556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK 615
            F +     L  +  +     +   ++++  ++L N  +  +L + ++    ++ L +  
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75

Query: 616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF 675
                  P      L NL  LR+   +   +    L  L  + +LD+S +     I    
Sbjct: 76  IHATNYNPI---SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLD 735
           +                L                                     V  +D
Sbjct: 133 N---------------TLPK-----------------------------------VNSID 142

Query: 736 LSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
           LS N     I   +  L  L +LN+  + +       I     L+ L        G
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 12/144 (8%)

Query: 112 KLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVE 171
               ++ L ++            I  LS L  L +     +S        L+     ++ 
Sbjct: 64  YAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 172 NSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINP 231
           +S       L +++ L  +  +DLS             +  L  LK+L ++   +     
Sbjct: 121 HSAH-DDSILTKINTLPKVNSIDLSYNGAITD---IMPLKTLPELKSLNIQFDGVHDYRG 176

Query: 232 SFIWLFNLSTSIETLDLSDNHLPS 255
               + +    +  L      +  
Sbjct: 177 ----IEDF-PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 748 EITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLD 807
               +  LT + L+  N+T L    I    ++  L ++  H + N  + +S LS L  L 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLR 94

Query: 808 LSYNSLSGKIP 818
           +    ++    
Sbjct: 95  IMGKDVTSDKI 105

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 5e-12
 Identities = 49/279 (17%), Positives = 82/279 (29%), Gaps = 22/279 (7%)

Query: 553 CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLD 612
             +    L   +L +               + +   L  +R             +L   +
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCE 355

Query: 613 LRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672
           L        + + +  S + L  L  ++      I   +  L  +     +L   S    
Sbjct: 356 LSVEKST-VLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLD---NVLLTWKGSEHEYKSTLG 729
                 + +   +S         E  V+       R L      L      E      L 
Sbjct: 414 VDPMRAAYLDDLRSKF-----LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ-----LL 463

Query: 730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
            V +LDLS N+L  A+P  +  L  L  L  S N L  +    +  L  L  L L  N  
Sbjct: 464 LVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520

Query: 790 SGNIPS--SLSLLSGLSVLDLSYNSLSGKIPLGTQLQSF 826
                +   L     L +L+L  NSL  +  +  +L   
Sbjct: 521 Q-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.8 bits (157), Expect = 7e-11
 Identities = 62/361 (17%), Positives = 108/361 (29%), Gaps = 60/361 (16%)

Query: 259 YPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLN 318
                ++SR    L + F+     +    +    L ++  A   +E   P        + 
Sbjct: 244 VLCCVHVSREEACLSVCFSR---PLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVW 300

Query: 319 QLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGEN 378
              LP   L+ QL +           +S +   L  +       D      L   +L   
Sbjct: 301 LCDLPAASLNDQLPQHTFR-VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVE 359

Query: 379 HLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWV 438
                +   L    +L+ L  +          T    M  L  L     +L    S    
Sbjct: 360 KST-VLQSELESCKELQELEPENKWC----LLTIILLMRALDPLLYEKETLQ-YFS---- 409

Query: 439 PAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLS 498
               LK +           P      + L S  +    +             ++  L+L+
Sbjct: 410 ---TLKAVD----------PMRAAYLDDLRSKFLLENSVLK-------MEYADVRVLHLA 449

Query: 499 NNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFN 558
           +  ++  L  L  L                         T L+LS N+   LP       
Sbjct: 450 HKDLT-VLCHLEQLL----------------------LVTHLDLSHNRLRALPPALAALR 486

Query: 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNG-ELPSSLKNCSKLRVLDLRKNA 617
            L +L  ++N     +   +  L  +Q L L NNRL        L +C +L +L+L+ N+
Sbjct: 487 CLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

Query: 618 L 618
           L
Sbjct: 545 L 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 1e-08
 Identities = 45/296 (15%), Positives = 85/296 (28%), Gaps = 22/296 (7%)

Query: 148 CGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWF 207
           C +    +      L         +    +     R SH+        S  +      + 
Sbjct: 260 CFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFR 319

Query: 208 QVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSR 267
            + +   S K  VL    L      +         +   +LS       +V        +
Sbjct: 320 VIWTGSDSQKECVL----LKDRPECWCRDSATDEQLFRCELSVEKS---TVLQSELESCK 372

Query: 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLAS---NELEGGIPKFFGNMCSLNQLYLPR 324
            +  L+        +I    + +  L          + L+   P     +  L   +L  
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432

Query: 325 NKLSGQLSELIQNLS-SGCTVNSLEG---------LCLYANDITGPIPDLGRFLSLKVLK 374
           N +       ++ L  +   +  L           L L  N +    P L     L+VL+
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 492

Query: 375 LGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
             +N L       +++L +L+ L L  N      +     +   L +L L  NSL 
Sbjct: 493 ASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 108 PALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEY 167
             L +L  + HLDLS N      +P  + +L  L  L  S       +     +L   + 
Sbjct: 457 CHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQAS-DNALENVD-GVANLPRLQE 512

Query: 168 FNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSD-WFQVVSQLHSLKTLV 220
             + N+ L    +++ L     L  L+L   +L +      ++   L S+ +++
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 60/338 (17%), Positives = 106/338 (31%), Gaps = 59/338 (17%)

Query: 106 ISPALLKLRGLRHLDLSKNDFG---GSPVPEFIGSLSKLRYLNLSC---GTPSSKIPHPF 159
           +   LL+   ++ + LS N  G      + E I S   L     S    G    +IP   
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 160 RDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSC--INLTKSSDWFQVVSQLHSLK 217
           R L                   + L     L  + LS      T        +S+   L+
Sbjct: 84  RLLL------------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 218 TLVLRSCYLPP----------INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPW--LFNL 265
            L L +  L P             +       +  + ++    N L + S+  W   F  
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 266 SRNILHLDLGFNHL-----QGSIPEAFQHMVSLRLLSLASNEL--EGG--IPKFFGNMCS 316
            R +  + +  N +     +  + E   +   L++L L  N     G   +     +  +
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 317 LNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGP-IPDLGRFL-----SL 370
           L +L L    LS + +  + +  S      L+ L L  N+I    +  L   +      L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 371 KVLKLGENHLN--GTINKSLSHLFK----LETLSLDGN 402
             L+L  N  +    +   +  +F      E   LD  
Sbjct: 306 LFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 45/291 (15%), Positives = 92/291 (31%), Gaps = 57/291 (19%)

Query: 241 TSIETLDLSDNHLPSSSVYPWLFNLSRN--ILHLDLGFNHLQ----------GSIPEAFQ 288
            S++ + LS N + + +      N++    +   +                   + +A  
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91

Query: 289 HMVSLRLLSLASNEL--EGGIP--KFFGNMCSLNQLYLPRNKLSGQ----LSELIQNL-- 338
               L  + L+ N        P   F      L  LYL  N L  Q    ++  +Q L  
Sbjct: 92  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 151

Query: 339 -SSGCTVNSLEGLCLYANDITGP-IPDLGRFL----SLKVLKLGENHLN-----GTINKS 387
                    L  +    N +    + +  +       L  +K+ +N +        + + 
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 388 LSHLFKLETLSLDGNSFTG----VISETFFSNMSNLQMLFLADNSLT----------LKL 433
           L++  +L+ L L  N+FT      ++    S   NL+ L L D  L+             
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSW-PNLRELGLNDCLLSARGAAAVVDAFSK 270

Query: 434 SHDWVPAFQLKWLSLASCKMGP----HFPNWLQTQN-QLISLDISNIGISD 479
                    L+ L L   ++           +  +   L+ L+++    S+
Sbjct: 271 LE----NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 48/321 (14%), Positives = 92/321 (28%), Gaps = 79/321 (24%)

Query: 368 LSLKVLKLGENHLNG----TINKSLSHLFKLETLSLDGNSFTG----VISETFFSNMSNL 419
            S++   L  + +      ++   L     ++ + L GN+        +SE   S   +L
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDL 62

Query: 420 QMLFLADNSLTLKLSHDWVPAF----------QLKWLSLASCKMGP----HFPNWLQTQN 465
           ++   +D                         +L  + L+    GP       ++L    
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 466 QLISLDISNIGISD------------TIPDWFWDLSIELFFLNLSNNHISGK-------- 505
            L  L + N G+                 +     +  L  +    N +           
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 506 LPDLSVLKSDDIVIDISSNNF--DGPIPP----LPSNS--TFLNLSKNKF---------S 548
                +L +    + +  N    +G        L        L+L  N F          
Sbjct: 183 FQSHRLLHT----VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 549 GLPDCWLNFNSLSILNLANNRFSGK----IPDSMGFLHN--IQTLSLRNNRLNGE----L 598
            L        +L  L L +   S +    + D+   L N  +QTL L+ N +  +    L
Sbjct: 239 ALKSW----PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294

Query: 599 PSSLK-NCSKLRVLDLRKNAL 618
            + +      L  L+L  N  
Sbjct: 295 KTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 41/292 (14%), Positives = 89/292 (30%), Gaps = 71/292 (24%)

Query: 559 SLSILNLANNRFSGK----IPDSMGFLHNIQTLSLRNNRLNGE----LPSSLKNCSKLRV 610
           S+   +L  +  + +    +   +    +++ + L  N +  E    L  ++ +   L +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 611 LDLRKN---ALFGEVPTCVGG------SLQNLIILRLKSNNF--HGNIPF--QLCHLAFI 657
            +        +  E+P  +            L  +RL  N F      P    L     +
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 658 QVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTW 717
           + L L  N +    P+  +  +  +QE + N                             
Sbjct: 125 EHLYLHNNGLG---PQAGAKIARALQELAVN----------------------------- 152

Query: 718 KGSEHEYKSTLGFVKYLDLSSNKL----CEAIPEEITDLVGLTALNLSRNNLT-----GL 768
              + +    L   + +    N+L     +   +       L  + + +N +       L
Sbjct: 153 --KKAKNAPPL---RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 769 IPPKIGQLKSLDFLDLSRNHFSGN----IPSSLSLLSGLSVLDLSYNSLSGK 816
           +   +   + L  LDL  N F+      +  +L     L  L L+   LS +
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 46/306 (15%), Positives = 87/306 (28%), Gaps = 72/306 (23%)

Query: 416 MSN--LQMLFLADNSLTLK----LSHDWVPAFQLKWLSLASCKMGP----HFPNWLQTQN 465
           M+   ++   L  +++T +    +    +    +K + L+   +G          + ++ 
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 466 QLISLDISNIGISDTIPDWFWDLSI---------ELFFLNLSNNHISGKLPDLSVLKSDD 516
            L   + S+I       +    L +         +L  + LS+N                
Sbjct: 61  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-----------PT 109

Query: 517 IVIDISSNNFDGPIPPLPSNST--FLNLSKNKFS---------GLPDCWLNFN-----SL 560
               +           L  ++    L L  N             L +  +N        L
Sbjct: 110 AQEPLID--------FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161

Query: 561 SILNLANNRFSGK----IPDSMGFLHNIQTLSLRNNRLNGE-----LPSSLKNCSKLRVL 611
             +    NR           +      + T+ +  N +  E     L   L  C +L+VL
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 612 DLRKNALFGEVPTCVGGSL---QNLIILRLKSNNF--HGNIPF----QLCHLAFIQVLDL 662
           DL+ N       + +  +L    NL  L L        G               +Q L L
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 663 SLNNIS 668
             N I 
Sbjct: 282 QYNEIE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 50/317 (15%), Positives = 94/317 (29%), Gaps = 75/317 (23%)

Query: 538 TFLNLSKNKFS-----GLPDCWLNFNSLSILNLANN---RFSGKIPDSMGFL-------H 582
             + LS N         L +   +   L I   ++    R   +IP+++  L        
Sbjct: 35  KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94

Query: 583 NIQTLSLRNNRLNGE----LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRL 638
            + T+ L +N         L   L   + L  L L  N L  +    +  +LQ L + + 
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154

Query: 639 KSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEIL 698
             N               ++ +    N                ++  S   +   A +  
Sbjct: 155 AKNAPP------------LRSIICGRN---------------RLENGS---MKEWA-KTF 183

Query: 699 VVPGYIYYFRYLDNVLLTWKGSEHEYKSTLG---FVKYLDLSSNKL----CEAIPEEITD 751
                ++  + +    +  +G EH     L     +K LDL  N        A+   +  
Sbjct: 184 QSHRLLHTVK-MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 752 LVGLTALNLSRNNLT---------GLIPPKIGQLKSLDFLDLSRNHFSGN----IPSSL- 797
              L  L L+   L+                 +   L  L L  N    +    + + + 
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAF---SKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 798 SLLSGLSVLDLSYNSLS 814
             +  L  L+L+ N  S
Sbjct: 300 EKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 58/373 (15%), Positives = 95/373 (25%), Gaps = 104/373 (27%)

Query: 242 SIETLDLSDNHLPSSSVYPWLFNLSRN--ILHLDLGFNHL--QG--SIPEAFQHMVSLRL 295
           SIE   L  + + +         L  +  +  + L  N +  +    + E       L +
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 296 LSLASN--------ELEGG--IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVN 345
              +            E    + +       L+ + L  N       E + +  S  T  
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT-- 122

Query: 346 SLEGLCLYANDIT--------------GPIPDLGRFLSLKVLKLGENHLNG----TINKS 387
            LE L L+ N +                          L+ +  G N L         K+
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 388 LSHLFKLETLSLDGNSFT-----GVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF- 441
                 L T+ +  N         ++ E   +    L++L L DN+ T   S     A  
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLE-GLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 442 ---QLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLS 498
               L+ L L  C +                       + D         +I L  L L 
Sbjct: 242 SWPNLRELGLNDCLLS----------------ARGAAAVVDAFSK---LENIGLQTLRLQ 282

Query: 499 NNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFN 558
            N I             D V  + +         +                         
Sbjct: 283 YNEIE-----------LDAVRTLKTV--------IDEKMP-------------------- 303

Query: 559 SLSILNLANNRFS 571
            L  L L  NRFS
Sbjct: 304 DLLFLELNGNRFS 316

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 11/143 (7%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLL 296
           NL  +I  + L  N +    + P  F+  + +  +DL  N +   +   AFQ + SL  L
Sbjct: 29  NLPETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSL 85

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
            L  N++       F  + SL  L L  NK++    +  Q+L       +L  L LY N 
Sbjct: 86  VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH------NLNLLSLYDNK 139

Query: 357 ITG-PIPDLGRFLSLKVLKLGEN 378
           +            +++ + L +N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 42/164 (25%), Positives = 62/164 (37%), Gaps = 30/164 (18%)

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
           NL   I  + L  N ++   P AF     LR + L++N++    P  F  + SLN L L 
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88

Query: 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT 383
            NK++     L + L                              SL++L L  N +N  
Sbjct: 89  GNKITELPKSLFEGLF-----------------------------SLQLLLLNANKINCL 119

Query: 384 INKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
              +   L  L  LSL  N    +   T FS +  +Q + LA N
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGT-FSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
           IP  LP   T + L +N    +P      +  L  ++L+NN+ S   PD+   L ++ +L
Sbjct: 26  IPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85

Query: 588 SLRNNRLNGELPSSL-KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN 646
            L  N++  ELP SL +    L++L L  N +   +       L NL +L L  N     
Sbjct: 86  VLYGNKIT-ELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTI 143

Query: 647 IPFQLCHLAFIQVLDLSLN 665
                  L  IQ + L+ N
Sbjct: 144 AKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 211 SQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNIL 270
           S    L+ + L +  +  + P     F    S+ +L L  N +  + +   LF    ++ 
Sbjct: 53  SPYKKLRRIDLSNNQISELAPD---AFQGLRSLNSLVLYGNKI--TELPKSLFEGLFSLQ 107

Query: 271 HLDLGFNHLQGSIPE-AFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRN 325
            L L  N +   +   AFQ + +L LLSL  N+L+      F  + ++  ++L +N
Sbjct: 108 LLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 728 LGFVKYLDLSSNKLCEAIPEEITD-LVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLS 785
              ++ +DLS+N++   +  +    L  L +L L  N +T L P  +   L SL  L L+
Sbjct: 55  YKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLN 112

Query: 786 RNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
            N  +     +   L  L++L L  N L   I  GT
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGT 147

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 27/153 (17%)

Query: 495 LNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DC 553
           + L  N I                  I    F             ++LS N+ S L  D 
Sbjct: 37  IRLEQNTIK----------------VIPPGAFSPY-----KKLRRIDLSNNQISELAPDA 75

Query: 554 WLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLSLRNNRLNGELPSSLKNCSKLRVL 611
           +    SL+ L L  N+ + ++P S+ F  L ++Q L L  N++N     + ++   L +L
Sbjct: 76  FQGLRSLNSLVLYGNKIT-ELPKSL-FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133

Query: 612 DLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
            L  N L   +       L+ +  + L  N F 
Sbjct: 134 SLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPFI 165

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 60/285 (21%), Positives = 107/285 (37%), Gaps = 45/285 (15%)

Query: 184 LSHLSSLRHLDLSCINLTKSSDWFQVVSQLH----SLKTLVLRSCYLPPINPSFI--WLF 237
            S    +  LDLS  NL  S    +++        S+ +L L    L   N   +   L 
Sbjct: 18  TSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 238 NLSTSIETLDLSDNHLPSSSVYP---WLFNLSRNILHLDLGFNHLQGS----IPEAFQHM 290
            +  ++ +L+LS N L   S       L  +   I  LDLG+N           +AF ++
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 291 -VSLRLLSLASNELEGGIPKFFGNM-----CSLNQLYLPRNKLS----GQLSELIQNLSS 340
             S+  L+L  N+L          +      ++N L L  N L+     +L++ + ++ +
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 341 GCTVNSLEGLCLYANDITGP-IPDLGRFL-----SLKVLKLGENHLNGTINKSLSHLFK- 393
                S+  L L AN +      +L          +  L L  N L+G   ++L  L   
Sbjct: 197 -----SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251

Query: 394 ---LETLSLDGNSFTGVISE------TFFSNMSNLQMLFLADNSL 429
              L+T+ LD +    +  E        F N+  + ++      +
Sbjct: 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 57/356 (16%), Positives = 107/356 (30%), Gaps = 71/356 (19%)

Query: 106 ISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSL----SKLRYLNLSCGTPSSKIPHPFRD 161
           +        G+  LDLS N+       E I +     + +  LNLS              
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS-------------- 59

Query: 162 LSGFEYFNVENSNLFSVGSLERLSHL-----SSLRHLDLSCINLTKS-----SDWFQVVS 211
                       N     + + L  +     +++  L+LS   L+             + 
Sbjct: 60  -----------GNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 212 QLHSLKTLVLRSCYLPPINPSFI--WLFNLSTSIETLDLSDNHLPSSSVY---PWLFNLS 266
              ++  L L        + S       NL  SI +L+L  N L   S       L  + 
Sbjct: 109 F--TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166

Query: 267 RNILHLDLGFNHLQ----GSIPEAFQHM-VSLRLLSLASNEL-EGGIPK----FFGNMCS 316
            N+  L+L  N+L       + +    +  S+  L L++N L      +    F      
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 317 LNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL-------- 368
           +  L L  N L G   E ++ L        L+ + L  + +     +  + L        
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLK--HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 369 SLKVLKLGENHLNGTINKSLS-----HLFKLETLSLDGNSFTGVISETFFSNMSNL 419
            + ++      ++ + +  +S        K +  SL                  N+
Sbjct: 285 KIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNI 340

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 61/381 (16%), Positives = 112/381 (29%), Gaps = 85/381 (22%)

Query: 208 QVVSQLHSLKTLVLRSCYLPPINPSFI--WLFNLSTSIETLDLSDNHLPSSSVY---PWL 262
           +  S  H + +L L    L  I+   +     N   S+ +L+LS N L   +       L
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75

Query: 263 FNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYL 322
             +  N+  L+L  N L            S   L                   ++  L L
Sbjct: 76  AAIPANVTSLNLSGNFLSYK---------SSDELVKT----------LAAIPFTITVLDL 116

Query: 323 PRNKLSGQ-LSELIQNLSSGCTVNSLEGLCLYANDITGP-IPDLGRFL-----SLKVLKL 375
             N  S +  SE  Q  S+     S+  L L  ND+      +L + L     ++  L L
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPA--SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174

Query: 376 GENHLNGTINKSLSHLFK-----LETLSLDGNSFT----GVISETFFSNMSNLQMLFLAD 426
             N+L       L+         + +L L  N         ++  F S  +++  L L  
Sbjct: 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234

Query: 427 NSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFW 486
           N L             L+ L L              +   L ++ +    + +   +   
Sbjct: 235 NCLH---------GPSLENLKLL-----------KDSLKHLQTVYLDYDIVKNMSKEQCK 274

Query: 487 DLS------IELFFLNLSNNHIS---------------GKLPDLSVLKSDDIVIDISSNN 525
            L        ++  ++ +   I                GK    S+   +  +I    + 
Sbjct: 275 ALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSL--LNQCLIFAQKHQ 332

Query: 526 FDGPIPPLPSNSTFLNLSKNK 546
            +     +P        +   
Sbjct: 333 TNIEDLNIPDELRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 8e-07
 Identities = 47/298 (15%), Positives = 91/298 (30%), Gaps = 72/298 (24%)

Query: 369 SLKVLKLGENHLNGTINKSLSHLFK-----LETLSLDGNSFT----GVISETFFSNMSNL 419
            +  L L  N+L       L   F      + +L+L GNS        + +   +  +N+
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 420 QMLFLADNSLT----------LKLSHDWVPAFQLKWLSLASCKMGP----HFPNWLQTQN 465
             L L+ N L+          L         F +  L L            F        
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIP-----FTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 466 Q-LISLDISNIGISDT----IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVID 520
             + SL++    +       +      +   +  LNL  N+++                +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA-----------SKNCAE 186

Query: 521 ISSNNFDGPIPPLPSNSTFLNLSKNKF---------SGLPDCWLNFNSLSILNLANNRFS 571
           ++       +  +P++ T L+LS N                     N +  LNL  N   
Sbjct: 187 LAK-----FLASIPASVTSLDLSANLLGLKSYAELAYIFSS---IPNHVVSLNLCLNCLH 238

Query: 572 GK----IPDSMGFLHNIQTLSLRNNRLNG-------ELPSSLKNCSKLRVLDLRKNAL 618
           G     +      L ++QT+ L  + +          L ++  N  K+ ++D     +
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 48/314 (15%), Positives = 95/314 (30%), Gaps = 67/314 (21%)

Query: 388 LSHLFKLETLSLDGNSFT--GV--ISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQ- 442
            S    + +L L  N+        + + F +  +++  L L+ NSL  K S + V     
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 443 ----LKWLSLASCKMGP----HFPNWLQTQN-QLISLDISNIGISDT----IPDWFWDLS 489
               +  L+L+   +           L      +  LD+     S          F +L 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 490 IELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFS- 548
             +  LNL  N +                 ++        +  +P+N   LNL  N  + 
Sbjct: 138 ASITSLNLRGNDLG-----------IKSSDELIQI-----LAAIPANVNSLNLRGNNLAS 181

Query: 549 ----GLPDCWLNFN-SLSILNLANNRF--SGKIPDSMGFLHN---IQTLSLRNNRLNGE- 597
                L     +   S++ L+L+ N          +  F      + +L+L  N L+G  
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241

Query: 598 ---LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHL 654
              L     +   L+ + L  + +       +       +     +              
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIV-----KNMSKEQCKALGAAFPNIQK----------- 285

Query: 655 AFIQVLDLSLNNIS 668
             I ++D +   I 
Sbjct: 286 --IILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 50/319 (15%), Positives = 106/319 (33%), Gaps = 53/319 (16%)

Query: 559 SLSILNLANNRFSGKIPDSMGFL-----HNIQTLSLRNNRLNGE----LPSSLK-NCSKL 608
            ++ L+L+ N         +         ++ +L+L  N L  +    L   L    + +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 609 RVLDLRKNALFGEVPTCVGGSLQN----LIILRLKSNNFHGNIPFQLCHL-----AFIQV 659
             L+L  N L  +    +  +L      + +L L  N+F      +         A I  
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 660 LDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKG 719
           L+L  N++  K         ++    ++   + L    L         ++L ++  +   
Sbjct: 143 LNLRGNDLGIKSSDELI--QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS--- 197

Query: 720 SEHEYKSTLGFVKYLDLSSNKL----CEAIPEEITDL-VGLTALNLSRNNLTGLIPPKIG 774
                      V  LDLS+N L       +    + +   + +LNL  N L G     + 
Sbjct: 198 -----------VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246

Query: 775 QL----KSLDFLDLSRNHFSG-------NIPSSLSLLSGLSVLDLSYNSL--SGKIPLGT 821
            L    K L  + L  +            + ++   +  + ++D +   +  S  IP+  
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306

Query: 822 QLQSFNASVYAGNLELCGL 840
            ++  +      +L    L
Sbjct: 307 LIRELSGKADVPSLLNQCL 325

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 9e-10
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 12/163 (7%)

Query: 514 SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSG 572
             +    ++  +    IP LP ++  L L +     +P   + N  ++S + ++ +    
Sbjct: 11  HQEEDFRVTCKDIQR-IPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 573 KIPDSMGF--LHNIQTLSLRNNRLNGELPSS-LKNCSKLRVLDLRKNALFGEVPTCVGGS 629
           ++     F  L  +  + +RN R    +    LK    L+ L +    L          S
Sbjct: 70  QLESHS-FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 630 LQNLIILRLKSNNFHGNIP---FQ-LCHLAFIQVLDLSLNNIS 668
                IL +  N +  +IP   FQ LC+      L L  N  +
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 43/247 (17%)

Query: 188 SSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLD 247
                  ++C ++       ++ S   S +TL L   +L  I       F+   +I  + 
Sbjct: 11  HQEEDFRVTCKDIQ------RIPSLPPSTQTLKLIETHLRTIPSH---AFSNLPNISRIY 61

Query: 248 LSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIP-EAFQHMVSLRLLSLASNELEGG 306
           +S + +    +    F     + H+++        I  +A + +  L+ L + +  L+  
Sbjct: 62  VSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-M 119

Query: 307 IP--KFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDL 364
            P      +      L +  N     ++ +  N   G   N    L LY N  T      
Sbjct: 120 FPDLTKVYSTDIFFILEITDNP---YMTSIPVNAFQGLC-NETLTLKLYNNGFT------ 169

Query: 365 GRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNM-SNLQMLF 423
                     +     NGT         KL+ + L+ N +  VI +  F  + S   +L 
Sbjct: 170 ---------SVQGYAFNGT---------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 424 LADNSLT 430
           ++  S+T
Sbjct: 212 VSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 57/242 (23%)

Query: 579 GFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRL 638
               + QTL L    L      +  N   +  + +  +    ++ +    +L  +  + +
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 639 KSNNFHGNIP---FQLCHLAFIQVLDLSLNNISGKIP---KCFSNFSMMIQEKSSNPIIG 692
           ++      I     +   L  ++ L +    +    P   K +S     I E + N    
Sbjct: 88  RNTRNLTYIDPDALK--ELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDN---- 140

Query: 693 LANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDL 752
               +  +P     F+ L N  LT                 L L +N    ++     + 
Sbjct: 141 --PYMTSIPVNA--FQGLCNETLT-----------------LKLYNNGF-TSVQGYAFNG 178

Query: 753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNS 812
             L A+ L++N            L  +D     ++ F G       + SG S+LD+S  S
Sbjct: 179 TKLDAVYLNKNK----------YLTVID-----KDAFGG-------VYSGPSLLDVSQTS 216

Query: 813 LS 814
           ++
Sbjct: 217 VT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 34/231 (14%)

Query: 346 SLEGLCLYANDITG-PIPDLGRFLSLKVLKLGENHLNGTI-NKSLSHLFKLETLSLDGNS 403
           S + L L    +   P        ++  + +  +     + + S  +L K+  + +    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 404 FTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQT 463
               I       +  L+ L + +  L +       P                     + +
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKM------FPDL-----------------TKVYS 128

Query: 464 QNQLISLDIS-NIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDIS 522
            +    L+I+ N  ++    + F  L  E   L L NN  +  +   +   +    + ++
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187

Query: 523 SNNFDGPIPP-----LPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANN 568
            N +   I       + S  + L++S+   + LP        L  L   N 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 29/195 (14%), Positives = 69/195 (35%), Gaps = 13/195 (6%)

Query: 109 ALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHP-FRDLSGFEY 167
           A   L  +  + +S +            +LSK+ ++ +      + I     ++L   ++
Sbjct: 50  AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109

Query: 168 FNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKS--SDWFQVVSQLHSLKTLVLRSCY 225
             + N+ L     L ++        L+++      S   + FQ +       TL L +  
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNG 167

Query: 226 LPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLF-NLSRNILHLDLGFNHLQGSIP 284
              +       FN  T ++ + L+ N    + +    F  +      LD+    +  ++P
Sbjct: 168 FTSVQGY---AFNG-TKLDAVYLNKNKY-LTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221

Query: 285 -EAFQHMVSLRLLSL 298
            +  +H+  L   + 
Sbjct: 222 SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 3/100 (3%)

Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHF 789
            + L L    L        ++L  ++ + +S +     +       L  +  +++     
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 790 SGNIPSS-LSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNA 828
              I    L  L  L  L +    L    P  T++ S + 
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDI 131

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 43/292 (14%), Positives = 87/292 (29%), Gaps = 55/292 (18%)

Query: 288 QHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL 347
             + +    +L    +          +  +       +         IQ+L+      +L
Sbjct: 16  PGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSN--------IQSLAGMQFFTNL 65

Query: 348 EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGV 407
           + L L  N I+  +  L     L+ L +  N L       +     L  L LD N     
Sbjct: 66  KELHLSHNQISD-LSPLKDLTKLEELSVNRNRL--KNLNGIPSA-CLSRLFLDNNELRDT 121

Query: 408 ISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQL 467
                  ++ NL++L + +N L   +                           L   ++L
Sbjct: 122 ---DSLIHLKNLEILSIRNNKLK-SIVM-------------------------LGFLSKL 152

Query: 468 ISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFD 527
             LD+    I++T       L  ++ +++L+         +  V    ++ I  +  + D
Sbjct: 153 EVLDLHGNEITNTGG--LTRLK-KVNWIDLTGQKCV----NEPVKYQPELYITNTVKDPD 205

Query: 528 G-PIPPLP-SNS---TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKI 574
           G  I P   SN        +         +    F+    +      F G +
Sbjct: 206 GRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEAIFDGTV 257

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 43/240 (17%), Positives = 85/240 (35%), Gaps = 33/240 (13%)

Query: 177 SVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWL 236
           SV  L     LS +++ +    N+         +    +LK L L    +  ++P    L
Sbjct: 30  SVTDLVSQKELSGVQNFNGDNSNIQS----LAGMQFFTNLKELHLSHNQISDLSP----L 81

Query: 237 FNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL 296
            +L T +E L ++ N L + +  P        +  L L  N L     ++  H+ +L +L
Sbjct: 82  KDL-TKLEELSVNRNRLKNLNGIPSA-----CLSRLFLDNNEL--RDTDSLIHLKNLEIL 133

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
           S+ +N+L+       G +  L  L L  N+        I N      +  +  + L    
Sbjct: 134 SIRNNKLKS--IVMLGFLSKLEVLDLHGNE--------ITNTGGLTRLKKVNWIDLTGQK 183

Query: 357 ITGPIPDLGRFLSLKVLKLGENHLNGTI--NKSLSHLFKLETLSL--DGNSFTGVISETF 412
                  +     L +    ++  +G       +S+        +  +   +T  +S  F
Sbjct: 184 CV--NEPVKYQPELYITNTVKD-PDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKF 240

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 48/256 (18%), Positives = 89/256 (34%), Gaps = 29/256 (11%)

Query: 491 ELFFLNLSNNHIS--GKLPDLSVLKSDDIVIDISSNNFDGPIPPL--PSNSTFLNLSKNK 546
                NL    ++      +LS +++     +  ++N    +  +   +N   L+LS N+
Sbjct: 20  NAVKQNLGKQSVTDLVSQKELSGVQN----FNGDNSNIQS-LAGMQFFTNLKELHLSHNQ 74

Query: 547 FSGLPDCWL-NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNC 605
            S L    L +   L  L++  NR              +  L L NN L      SL + 
Sbjct: 75  ISDLSP--LKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRD--TDSLIHL 127

Query: 606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLN 665
             L +L +R N L   V     G L  L +L L  N         L  L  +  +DL+  
Sbjct: 128 KNLEILSIRNNKLKSIVML---GFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQ 182

Query: 666 NISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYK 725
               +  K      +      +N +        + P YI       +  + W+   +  +
Sbjct: 183 KCVNEPVKYQPELYI------TNTVKDPDGRW-ISPYYISNGGSYVDGCVLWELPVYTDE 235

Query: 726 STLGFVKYLDLSSNKL 741
            +  F +Y+++   + 
Sbjct: 236 VSYKFSEYINVGETEA 251

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 41/247 (16%), Positives = 80/247 (32%), Gaps = 36/247 (14%)

Query: 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSG 164
           ++ P    L      +L K              LS ++  N              + L+G
Sbjct: 11  QVFP-DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDN--------SNIQSLAG 58

Query: 165 FEYF-NVENSNLFS--VGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVL 221
            ++F N++  +L    +  L  L  L+ L  L ++   L   +           L  L L
Sbjct: 59  MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG-----IPSACLSRLFL 113

Query: 222 RSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG 281
            +  L   +     L +L  ++E L + +N L S  +  +L  L      LDL  N +  
Sbjct: 114 DNNELRDTDS----LIHL-KNLEILSIRNNKLKSIVMLGFLSKLE----VLDLHGNEI-- 162

Query: 282 SIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSG 341
           +       +  +  + L   +      K+   +   N +        G+       +S+G
Sbjct: 163 TNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK----DPDGRWISPY-YISNG 217

Query: 342 CTVNSLE 348
            +     
Sbjct: 218 GSYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 52/230 (22%)

Query: 589 LRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP 648
            R   +N ++       +     +L K ++   V       L  +      ++N   ++ 
Sbjct: 4   QRPTPIN-QV-FPDPGLANAVKQNLGKQSVTDLVSQ---KELSGVQNFNGDNSNIQ-SLA 57

Query: 649 FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ----EKSSNPIIGLANEILVVPGYI 704
             +     ++ L LS N IS       S    + +      + N +  L           
Sbjct: 58  G-MQFFTNLKELHLSHNQIS-----DLSPLKDLTKLEELSVNRNRLKNLNG--------- 102

Query: 705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNN 764
                + +  L                  L L +N+L +   + +  L  L  L++  N 
Sbjct: 103 -----IPSACL----------------SRLFLDNNELRD--TDSLIHLKNLEILSIRNNK 139

Query: 765 LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
           L  ++   +G L  L+ LDL  N  + N    L+ L  ++ +DL+     
Sbjct: 140 LKSIVM--LGFLSKLEVLDLHGNEIT-NT-GGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785
             L  ++ L ++ N+L             L+ L L  N L       +  LK+L+ L + 
Sbjct: 82  KDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIR 136

Query: 786 RNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG--TQLQSFNAS 829
            N    +I   L  LS L VLDL  N ++    L    ++   + +
Sbjct: 137 NNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLT 180

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 46/245 (18%)

Query: 530 IPPLP--SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
           + P P  +N+   NL K   + L       + +   N  N+     +   M F  N++ L
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKEL 68

Query: 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI 647
            L +N++     S LK+ +KL  L + +N     +    G     L  L L +N      
Sbjct: 69  HLSHNQI--SDLSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTD 122

Query: 648 PFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYF 707
              L HL  +++L +  N +   I        + + +   N I                 
Sbjct: 123 S--LIHLKNLEILSIRNNKLK-SIVMLGFLSKLEVLDLHGNEI----------------- 162

Query: 708 RYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG 767
                       +     + L  V ++DL+  K      E +     L   N  ++    
Sbjct: 163 ------------TNTGGLTRLKKVNWIDLTGQKCVN---EPVKYQPELYITNTVKDPDGR 207

Query: 768 LIPPK 772
            I P 
Sbjct: 208 WISPY 212

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 51/257 (19%), Positives = 89/257 (34%), Gaps = 6/257 (2%)

Query: 67  RDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARR--KFLKGKISPALLKLRGLRHLDLSKN 124
            D   W+ +  +    H  V     S    A R  +    +          ++H+DLS +
Sbjct: 44  SDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 103

Query: 125 DFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERL 184
               S +   +   SKL+ L+L     S  I +     S     N+   + FS  +L+ L
Sbjct: 104 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163

Query: 185 -SHLSSLRHLDLS-CINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTS 242
            S  S L  L+LS C + T+      V     ++  L L              L     +
Sbjct: 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223

Query: 243 IETLDLSDNHLPSSSVYPWLFNLSRNILHLDL-GFNHLQGSIPEAFQHMVSLRLLSLASN 301
           +  LDLSD+ +  +  +   F L   + HL L     +          + +L+ L +   
Sbjct: 224 LVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

Query: 302 ELEGGIPKFFGNMCSLN 318
             +G +      +  L 
Sbjct: 283 VPDGTLQLLKEALPHLQ 299

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 12/147 (8%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLL 296
           ++      L L++N             L   +  ++   N +   I E AF+    +  +
Sbjct: 29  HIPQYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKIT-DIEEGAFEGASGVNEI 86

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
            L SN LE    K F  + SL  L L  N+++   ++    LS      S+  L LY N 
Sbjct: 87  LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS------SVRLLSLYDNQ 140

Query: 357 ITGPIPD--LGRFLSLKVLKLGENHLN 381
           IT  +         SL  L L  N  N
Sbjct: 141 IT-TVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 31/157 (19%)

Query: 272 LDLGFNHLQGSIPEA-FQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQ 330
           L L  N          F+ +  LR ++ ++N++       F     +N++ L  N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL--- 93

Query: 331 LSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSH 390
                +N+                              SLK L L  N +    N S   
Sbjct: 94  -----ENVQHK---------------------MFKGLESLKTLMLRSNRITCVGNDSFIG 127

Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
           L  +  LSL  N  T  ++   F  + +L  L L  N
Sbjct: 128 LSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLP--DCWLNFNSLSILNLANNRFSGKIPDSMGF--LHNI 584
           IP  +P  +  L L+ N+F+ L     +     L  +N +NN+ +  I +   F     +
Sbjct: 26  IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGA-FEGASGV 83

Query: 585 QTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
             + L +NRL        K    L+ L LR N +   V       L ++ +L L  N   
Sbjct: 84  NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 728 LGFVKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKI-GQLKSLDFLDLS 785
           L  ++ ++ S+NK+   I E       G+  + L+ N L  +   K+   L+SL  L L 
Sbjct: 56  LPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLR 113

Query: 786 RNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
            N  +     S   LS + +L L  N ++  +  G 
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 731 VKYLDLSSNKLCEAIPEEI-TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
              L L++N+        I   L  L  +N S N +T +          ++ + L+ N  
Sbjct: 34  TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93

Query: 790 SGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT 821
                     L  L  L L  N ++  +   +
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDS 124

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 55/179 (30%)

Query: 395 ETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF----QLKWLSLAS 450
             L L+ N FT + +   F  +  L+ +  ++N +T  +      AF     +  + L  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEG---AFEGASGVNEILL-- 88

Query: 451 CKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLS 510
                       T N+L ++              F  L   L  L L +N I+       
Sbjct: 89  ------------TSNRLENVQ----------HKMFKGLE-SLKTLMLRSNRIT------- 118

Query: 511 VLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANN 568
                     + +++F G    L  +   L+L  N+ + +        +SLS LNL  N
Sbjct: 119 ---------CVGNDSFIG----LS-SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 49/196 (25%), Positives = 75/196 (38%), Gaps = 44/196 (22%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRLL 296
            +    E LDL    L  +++    F     +  L+L +N LQ ++    F  +  L  L
Sbjct: 32  GIPADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL 88

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
            LA+N+L       F ++  L++LYL  N+L        ++L SG              D
Sbjct: 89  GLANNQLASLPLGVFDHLTQLDKLYLGGNQL--------KSLPSG------------VFD 128

Query: 357 ITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSH-----LFKLETLSLDGNSFTGVISET 411
                    R   LK L+L  N L     +S+       L  L+TLSL  N     +   
Sbjct: 129 ---------RLTKLKELRLNTNQL-----QSIPAGAFDKLTNLQTLSLSTNQLQS-VPHG 173

Query: 412 FFSNMSNLQMLFLADN 427
            F  +  LQ + L  N
Sbjct: 174 AFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
           + LDL S  L          L  LT LNL  N L  L       L  L  L L+ N  + 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 792 NIPSSL-SLLSGLSVLDLSYNSLSGKIPLG-----TQLQ 824
           ++P  +   L+ L  L L  N L   +P G     T+L+
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK 134

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 237 FNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRL 295
           F+  T + TL L++N L  +S+   +F+    +  L LG N L+ S+P   F  +  L+ 
Sbjct: 79  FDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKE 135

Query: 296 LSLASNELEGGIPK-FFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYA 354
           L L +N+L+  IP   F  + +L  L L  N+L          L        L+ + L+ 
Sbjct: 136 LRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG------KLQTITLFG 188

Query: 355 N 355
           N
Sbjct: 189 N 189

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 18/137 (13%)

Query: 270 LHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN---ELEGGIPKFFGNMCSLNQLYLPRNK 326
           + L      ++  +      + + + L+L++N   ++          M +L  L L RN 
Sbjct: 28  VELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNL 81

Query: 327 LSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTIN- 385
           +       I+NL +    ++LE L +  N I   +  + + ++L+VL +  N +      
Sbjct: 82  IKK-----IENLDAVA--DTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEI 133

Query: 386 KSLSHLFKLETLSLDGN 402
             L+ L KLE L L GN
Sbjct: 134 DKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 28/124 (22%)

Query: 495 LNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCW 554
           L LS N+I  K+  LS ++                      N   L+L +N    + +  
Sbjct: 53  LALSTNNIE-KISSLSGME----------------------NLRILSLGRNLIKKIENLD 89

Query: 555 LNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN--GELPSSLKNCSKLRVLD 612
              ++L  L ++ N+ +  +   +  L N++ L + NN++   GE+   L    KL  L 
Sbjct: 90  AVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLL 146

Query: 613 LRKN 616
           L  N
Sbjct: 147 LAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)

Query: 726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785
           STL   K+L LS+N + E I   ++ +  L  L+L RN +   I        +L+ L +S
Sbjct: 45  STLKACKHLALSTNNI-EKI-SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWIS 101

Query: 786 RNHFSGNIPSSLSLLSGLSVLDLSYNSLS 814
            N  + ++ S +  L  L VL +S N ++
Sbjct: 102 YNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 734 LDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI 793
           L      + E +   ++ L     L LS NN+  +    +  +++L  L L RN     I
Sbjct: 30  LHGMIPPI-EKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIK-KI 85

Query: 794 PSSLSLLSGLSVLDLSYNSLS 814
            +  ++   L  L +SYN ++
Sbjct: 86  ENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 16/121 (13%)

Query: 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSG 164
           K+   L  L+  +HL LS N+         +  +  LR L+L      + I    + +  
Sbjct: 39  KMDATLSTLKACKHLALSTNNI---EKISSLSGMENLRILSLG----RNLI----KKIEN 87

Query: 165 FEYF--NVENSNLFS--VGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLV 220
            +     +E   +    + SL  +  L +LR L +S  N   +      ++ L  L+ L+
Sbjct: 88  LDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLL 146

Query: 221 L 221
           L
Sbjct: 147 L 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 30/129 (23%)

Query: 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
           L+        +        +   L L+ N    KI  S+  + N++ LSL  N +  ++ 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIE 86

Query: 600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQV 659
           +       L  L +  N +          SL  +                    L  ++V
Sbjct: 87  NLDAVADTLEELWISYNQI---------ASLSGI------------------EKLVNLRV 119

Query: 660 LDLSLNNIS 668
           L +S N I+
Sbjct: 120 LYMSNNKIT 128

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 77/513 (15%), Positives = 160/513 (31%), Gaps = 65/513 (12%)

Query: 159 FRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLS-CINLTKSSDWF---------- 207
           + ++  +    V   N ++V     +     +R ++L    +    +             
Sbjct: 37  WYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPW 96

Query: 208 --QVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNL 265
              + S    L+ + L+   +   +     +     + + L LS     S+     +   
Sbjct: 97  IEAMSSSYTWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT 154

Query: 266 SRNILHLDLGFNHLQG-------SIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLN 318
            RN+  LDL  + +           P+ +  +VSL +  LAS      + +      +L 
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214

Query: 319 QLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLY-------ANDITGPIPDLGRFLSLK 371
            L L R     +L+ L+Q          LE L           +  +G    L     L+
Sbjct: 215 SLKLNRAVPLEKLATLLQRAP------QLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 372 VLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTL 431
            L    + +   +    S   +L TL+L   +               LQ L++ D     
Sbjct: 269 CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDA 328

Query: 432 KLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIE 491
            L         L+ L +   +     PN   T+  L+S+ +    +           S+ 
Sbjct: 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE----------SVL 378

Query: 492 LFFLNLSNN---HISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFS 548
            F   ++N     I+   P+++  +     + I        +   P +  F  + +    
Sbjct: 379 YFCRQMTNAALITIARNRPNMTRFR-----LCIIEPKAPDYLTLEPLDIGFGAIVE---- 429

Query: 549 GLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE-LPSSLKNCSK 607
                  +   L  L+L+             +   ++ LS+     +   +   L  C  
Sbjct: 430 -------HCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482

Query: 608 LRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS 640
           LR L++R      +        L+ +  L + S
Sbjct: 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.0 bits (127), Expect = 4e-07
 Identities = 68/532 (12%), Positives = 152/532 (28%), Gaps = 81/532 (15%)

Query: 111 LKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSC---------------GTPSSKI 155
            ++       +   +         I    K+R + L                 G     I
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI 97

Query: 156 PHPFRDLSGFEYFNVENSNLFSVGSLERLS-HLSSLRHLDLS-CINLTKSSDWFQVVSQL 213
                  +  E   ++   + +   LE ++    + + L LS C   + +     + +  
Sbjct: 98  EAMSSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGFS-TDGLAAIAATC 155

Query: 214 HSLKTLVLRSCYLPPI-NPSFIWLFNLSTSIETLDLSDNHLP-SSSVYPWLFNLSRNILH 271
            +LK L LR   +  +         +  TS+ +L++S      S S    L     N+  
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLA--SNELEGGIPKFFGNMCSLNQLYLPRNKLSG 329
           L L        +    Q    L  L     + E+   +        S  +     +    
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 330 QLSELIQNLSSGCTVNSLEGLCLYANDIT--GPIPDLGRFLSLKVLKLGENHLNGTINKS 387
            +   +  + S C+   L  L L    +     +  L +   L+ L + +   +  +   
Sbjct: 276 AVPAYLPAVYSVCS--RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333

Query: 388 LSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLS 447
            S    L  L +  +    +      +    L  + +    L   L        Q+   +
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQG-LVSVSMGCPKLESVLYF----CRQMTNAA 388

Query: 448 LASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIEL---FFLNLSNNHISG 504
           L +  +  + PN +        L I      D +     D+          +L    +SG
Sbjct: 389 LIT--IARNRPN-MTR----FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441

Query: 505 KLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILN 564
            L       +D +   I +                L+++          +   + L + +
Sbjct: 442 LL-------TDKVFEYIGTY---------AKKMEMLSVA----------FAGDSDLGMHH 475

Query: 565 LANNRFSGKIPDSMGFLHNIQTLSLRNNRL-NGELPSSLKNCSKLRVLDLRK 615
           + +               +++ L +R+    +  L ++      +R L +  
Sbjct: 476 VLSG------------CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 46/390 (11%), Positives = 121/390 (31%), Gaps = 41/390 (10%)

Query: 106 ISPALLKLRGLRHLDLSK-----NDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFR 160
           ++  L +   L  L              S +   +    +LR L+       + +P  + 
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286

Query: 161 DLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLV 220
             S     N+  + + S   ++ L     L+ L +    +  +     + S    L+ L 
Sbjct: 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-LDYIEDAG-LEVLASTCKDLRELR 344

Query: 221 LRSCYLPPINP-------SFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLD 273
           +       + P         + +      +E++      + ++++   +     N+    
Sbjct: 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT-IARNRPNMTRFR 403

Query: 274 LGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLS- 332
           L               +       L    L+ G      +   L +L      LSG L+ 
Sbjct: 404 L-------------CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS-----LSGLLTD 445

Query: 333 ELIQNLSSGCTVNSLEGLCLYANDITGP-IPDLGRFL-SLKVLKLGE-NHLNGTINKSLS 389
           ++ + + +      +E L +     +   +  +     SL+ L++ +    +  +  + S
Sbjct: 446 KVFEYIGTYAK--KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503

Query: 390 HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLA 449
            L  + +L +   S +    +     M  L +  + +                  + ++A
Sbjct: 504 KLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVA 563

Query: 450 SCKMGPHFPNWLQTQNQLISLDISNIGISD 479
             +     P ++   +Q  ++  S   I+ 
Sbjct: 564 GPRF--DMPGFVWNMDQDSTMRFSRQIITT 591

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 313 NMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKV 372
           N     +L L   K+      +I+NL +       + +    N+I   +        LK 
Sbjct: 17  NAVRDRELDLRGYKI-----PVIENLGATLD--QFDAIDFSDNEIR-KLDGFPLLRRLKT 68

Query: 373 LKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
           L +  N +          L  L  L L  NS   +      +++ +L  L +  N +T
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL-SLKVLKLGENHLNGTINKSLSH 390
           +ELI+  +          L L    I   I +LG  L     +   +N +          
Sbjct: 6   AELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG--FPL 62

Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
           L +L+TL ++ N     I E     + +L  L L +NSL 
Sbjct: 63  LRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 15/137 (10%)

Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
           + L    ++ +    + + V  R L L   ++   I      +   + +    N++    
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-- 56

Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL-SLKVLKLGENHLN--GTINKSL 388
              +        +  L+ L +  N I      L + L  L  L L  N L   G ++  L
Sbjct: 57  ---LDGFPL---LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-L 109

Query: 389 SHLFKLETLSLDGNSFT 405
           + L  L  L +  N  T
Sbjct: 110 ASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR 593
                 L+L   K   + +     +    ++ ++N    K+ D    L  ++TL + NNR
Sbjct: 18  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNR 75

Query: 594 LNGELPSSLKNCSKLRVLDLRKNAL--FGEVPTCVGGSLQNLIILRLKSN 641
           +        +    L  L L  N+L   G++       L++L  L +  N
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS--LKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790
            + LDL   K+   I      L    A++ S N +  L       L+ L  L ++ N   
Sbjct: 21  DRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC 77

Query: 791 GNIPSSLSLLSGLSVLDLSYNSLS 814
                    L  L+ L L+ NSL 
Sbjct: 78  RIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 11/123 (8%)

Query: 182 ERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLST 241
            + ++    R LDL    +    +   + + L     +      +  ++      F L  
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIEN---LGATLDQFDAIDFSDNEIRKLDG-----FPLLR 64

Query: 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG-SIPEAFQHMVSLRLLSLAS 300
            ++TL +++N +    +   L     ++  L L  N L      +    + SL  L +  
Sbjct: 65  RLKTLLVNNNRI--CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

Query: 301 NEL 303
           N +
Sbjct: 123 NPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785
           +TL     +D S N++ +   +    L  L  L ++ N +  +       L  L  L L+
Sbjct: 39  ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96

Query: 786 RNHFSG-NIPSSLSLLSGLSVLDLSYN 811
            N          L+ L  L+ L +  N
Sbjct: 97  NNSLVELGDLDPLASLKSLTYLCILRN 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 10/83 (12%)

Query: 539 FLNLSKN---KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN 595
           FL+         + LP      N L  L L++NR SG +        N+  L+L  N++ 
Sbjct: 46  FLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

Query: 596 --GELPSSLKNCSKLRVLDLRKN 616
               +   LK    L+ LDL   
Sbjct: 102 DLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 313 NMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKV 372
               + +L L  ++     S   +          LE L      +T  I +L +   LK 
Sbjct: 15  TPSDVKELVLDNSR-----SNEGKLEGLTDEFEELEFLSTINVGLTS-IANLPKLNKLKK 68

Query: 373 LKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
           L+L +N ++G +         L  L+L GN    + +      + NL+ L L +  +T
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGF--LHNIQTLSLRNNRLNGE 597
           L+ S++    L      F  L  L+  N      +        L+ ++ L L +NR++G 
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLELSDNRVSGG 79

Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
           L    + C  L  L+L  N +           L+NL  L L + 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785
                +++L   +  L       +  L  L  L LS N ++G +     +  +L  L+LS
Sbjct: 39  DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 786 RNHFSG-NIPSSLSLLSGLSVLDLSYN 811
            N     +    L  L  L  LDL   
Sbjct: 97  GNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 733 YLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792
            LD S +   + +     +   L  L+     LT +    + +L  L  L+LS N  SG 
Sbjct: 23  VLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG 79

Query: 793 IPSSLSLLSGLSVLDLSYNSLS 814
           +         L+ L+LS N + 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIK 101

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 12/111 (10%)

Query: 508 DLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLAN 567
            L   KS+D  I+  +  F         N  FL+L       + +       L  L L+ 
Sbjct: 30  VLDNCKSNDGKIEGLTAEFV--------NLEFLSLINVGLISVSNLP-KLPKLKKLELSE 80

Query: 568 NRFSGKIPDSMGFLHNIQTLSLRNNRLN--GELPSSLKNCSKLRVLDLRKN 616
           NR  G +      L N+  L+L  N+L     L   LK    L+ LDL   
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 313 NMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKV 372
              ++ +L L            I+ L++     +LE L L    +   + +L +   LK 
Sbjct: 22  TPAAVRELVL---DNCKSNDGKIEGLTAEFV--NLEFLSLINVGLIS-VSNLPKLPKLKK 75

Query: 373 LKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
           L+L EN + G ++     L  L  L+L GN    + +      +  L+ L L +  +T
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 2/103 (1%)

Query: 539 FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGEL 598
            L+  K+    +      F +L  L+L N      +  ++  L  ++ L L  NR+ G L
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 599 PSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
               +    L  L+L  N L           L+ L  L L + 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 733 YLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792
            LD   +     I     + V L  L+L    L  +    + +L  L  L+LS N   G 
Sbjct: 30  VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86

Query: 793 IPSSLSLLSGLSVLDLSYNSLS 814
           +      L  L+ L+LS N L 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785
           +    +++L L +  L       +  L  L  L LS N + G +     +L +L  L+LS
Sbjct: 46  AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103

Query: 786 RNHFSG-NIPSSLSLLSGLSVLDLSYNSLS 814
            N     +    L  L  L  LDL    ++
Sbjct: 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASN 301
           ++  L L +       +         N+  L L    L  S+      +  L+ L L+ N
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEF-VNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSEN 81

Query: 302 ELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDIT 358
            + GG+      + +L  L L  NKL   +S L + L     +  L+ L L+  ++T
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTL-EPLKK---LECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 99  RKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHP 158
            K   GKI     +   L  L L             +  L KL+ L LS       +   
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGL---ISVSNLPKLPKLKKLELSENRIFGGLDML 90

Query: 159 FRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSD-WFQVVSQLHSLK 217
              L    + N+  + L  + +LE L  L  L+ LDL    +T  +D    V   L  L 
Sbjct: 91  AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150

Query: 218 TL 219
            L
Sbjct: 151 YL 152

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 9e-07
 Identities = 91/607 (14%), Positives = 178/607 (29%), Gaps = 174/607 (28%)

Query: 267 RNILHL-------DLGFNHLQGSIPEAF-----QHMV--------SLRLLSLASNELEGG 306
           ++IL +       +     +Q             H++        +LRL     ++ E  
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 307 IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGR 366
           + KF      L   Y         L   I+      ++ +      Y         D   
Sbjct: 79  VQKFVEE--VLRINY-------KFLMSPIKTEQRQPSMMTRM----YIEQRDRLYNDNQV 125

Query: 367 FLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNM-----SNLQM 421
           F    V +L + +L   + ++L  L   + + +DG              +     + + +
Sbjct: 126 FAKYNVSRL-QPYLK--LRQALLELRPAKNVLIDG--------------VLGSGKTWVAL 168

Query: 422 LFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQT-QNQLISLDISNIGISDT 480
                  +  K+       F++ WL+L +C         LQ    Q+     S    S  
Sbjct: 169 DVCLSYKVQCKMD------FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 481 IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDI----VIDISSNNFDGPIPPLPSN 536
           I      +  EL  L  S  + +     L VL   ++      +     F+        +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENC----LLVL--LNVQNAKAWNA----FNL-------S 265

Query: 537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIP---DSMGFLHNIQTLSLRNNR 593
              L  ++ K               + +  +   +  I     SM    + +  SL    
Sbjct: 266 CKILLTTRFK--------------QVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKY 310

Query: 594 LN---GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF-HGNIPF 649
           L+    +LP  +   +  R+      ++  E       S+++ +      +N+ H N   
Sbjct: 311 LDCRPQDLPREVLTTNPRRL------SIIAE-------SIRDGLA---TWDNWKHVNCD- 353

Query: 650 QLCHLAFIQVLDLSLNNISGKIPK-CFSNFSMMIQEKSSN-PIIGLANEILVVPGYIYYF 707
                    +++ SLN +     +  F   S+     S++ P I L   ++         
Sbjct: 354 -----KLTTIIESSLNVLEPAEYRKMFDRLSVF--PPSAHIPTILL--SLI--------- 395

Query: 708 RYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEIT----DLVGLTALNLSRN 763
                    W   +      +  V  L   S  L E  P+E T     +     L +   
Sbjct: 396 ---------W--FDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSI--YLELKVKLE 440

Query: 764 NLTGL---IPPKIGQLKSLDFLDLSRNHFSGNIPSSLS----------LLSGLSVLDLSY 810
           N   L   I       K+ D  DL   +      S +            ++   ++ L +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 811 NSLSGKI 817
             L  KI
Sbjct: 501 RFLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 84/597 (14%), Positives = 166/597 (27%), Gaps = 200/597 (33%)

Query: 150 TPSSKIPHPFRDL---------SGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINL 200
             + +  + ++D+           F+  +V++    S+ S E + H+   +      + L
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 201 TKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLF------NLSTSIETLDLSDNHLP 254
                W  +  Q   ++  V        +  ++ +L           S+ T    +    
Sbjct: 68  F----WTLLSKQEEMVQKFVEEV-----LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 255 ---SSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAF--QH-MV-----SLRLLSLASNEL 303
               + V+   +N+SR   +L L    L    P        ++      + L    S ++
Sbjct: 119 LYNDNQVFA-KYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 304 E----GGIPKF---FGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND 356
           +      I  F     N  S   +     KL  Q+     N +S    +    + L  + 
Sbjct: 177 QCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQID---PNWTSRS--DHSSNIKLRIHS 229

Query: 357 ITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG-------NSF----- 404
           I     +L R L  K  +             L        L L         N+F     
Sbjct: 230 IQ---AELRRLLKSKPYE-----------NCL--------LVLLNVQNAKAWNAFNLSCK 267

Query: 405 ----TGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLAS-------CKM 453
               T     T F + +    + L  +S+TL  + D V +  LK+L              
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 454 GP---------------HFPNWLQTQ----NQLISLDISNIGISDTIPDWFWDLSI---- 490
            P                + NW          +I   ++ +         F  LS+    
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPS 384

Query: 491 --------ELFFLNLSNN---HISGKLPDLSVLKSD---------DIVIDISSNN----- 525
                    L + ++  +    +  KL   S+++            I +++         
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 526 ----------------FDGPIPPLPSNSTFLNLS---KN-----KFSGLPDCWLNFNSL- 560
                            D  IPP      + ++    KN     + +     +L+F  L 
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 561 --------------SILNLAN-------------NRFSGKIPDSMGFLHNIQTLSLR 590
                         SILN                 ++   +   + FL  I+   + 
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-04
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 41/196 (20%)

Query: 7   LLLEYLALSSVILFQLEPRLGASNNITRCIDEEREALLTFKQSLVDEYGVLSSWGSEDGK 66
           +++  L   S++  Q +    +  +I   +  + E      +S+VD Y +  ++ S+D  
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 67  RDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDF 126
                      S+   H+K +        F R  FL                      DF
Sbjct: 466 PPY--LDQYFYSHIGHHLKNIEHPERMTLF-RMVFL----------------------DF 500

Query: 127 GGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFS--VGSLERL 184
                  F+    K+R+ + +     S I +  + L  ++ +  +N   +   V ++   
Sbjct: 501 R------FLE--QKIRHDSTAWNASGS-ILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 185 -----SHLSSLRHLDL 195
                 +L   ++ DL
Sbjct: 552 LPKIEENLICSKYTDL 567

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 74/545 (13%), Positives = 152/545 (27%), Gaps = 82/545 (15%)

Query: 111 LKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNV 170
            K+       ++      +           LR L L                + F     
Sbjct: 45  FKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKG----------KPRAAMFNLIPE 94

Query: 171 ENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPIN 230
                 +    E  ++L  L+ +    + ++         ++   L+TL L  C      
Sbjct: 95  NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-FTT 153

Query: 231 PSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHM 290
              + +      I+TL + ++         WL  L++                     H 
Sbjct: 154 DGLLSIVTHCRKIKTLLMEESSFSEKDG-KWLHELAQ---------------------HN 191

Query: 291 VSLRLLSLASNELEG----GIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS 346
            SL +L+    E        +     N  SL  + +          E+++ +       +
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-------EILELVGFFKAAAN 244

Query: 347 LEGLCL--YANDITGPIPDLGRFLSLKVLKLGENHL-NGTINKSLSHLFKLETLSLDGNS 403
           LE  C      DI  P   +      K+ +LG +++    +        ++  L L    
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304

Query: 404 FTGVISETFFSNMSNLQMLFLADNSLTLK-LSHDWVPAFQLKWLSLASCKMGPHFPNWLQ 462
                  T      NL++L    N +  + L        QLK L +             +
Sbjct: 305 LETEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQYCKQLKRLRIERG--------ADE 355

Query: 463 TQNQLISLDISNIGISDTIPDWFWDL-SIELFFLNLSNN---HISGKLPDLSVLK--SDD 516
              +     +S  G+   +     +L  + ++  +++N     I   L +L   +    D
Sbjct: 356 QGMEDEEGLVSQRGLI-ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414

Query: 517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPD 576
               I+    D  +  L      L     +             L +  +           
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKL-----RRFAFYLRQGGLTDLGLSYIGQY-------- 461

Query: 577 SMGFLHNIQTLSLRNNRLNGE-LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII 635
                 N++ + L     + E L    + C  L+ L++R               L +L  
Sbjct: 462 ----SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517

Query: 636 LRLKS 640
           L ++ 
Sbjct: 518 LWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 8e-04
 Identities = 42/363 (11%), Positives = 98/363 (26%), Gaps = 86/363 (23%)

Query: 106 ISPALLKLRGLRHL-DLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSG 164
           +    + L   R L  L  +  G + +P      +++R L+L                  
Sbjct: 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL----------------- 301

Query: 165 FEYFNVENSNLFSVGSLERLSHLSSLRHLDLS-CINLTKSSDWFQVVSQLHSLKTLVLRS 223
                   + L +      +    +L  L+    I          +      LK L +  
Sbjct: 302 -------YALLETEDHCTLIQKCPNLEVLETRNVIGD---RGLEVLAQYCKQLKRLRIER 351

Query: 224 CYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQ--- 280
                               E   +S   L +      L    + + ++ +  + +    
Sbjct: 352 GADEQ-----------GMEDEEGLVSQRGLIA------LAQGCQELEYMAVYVSDITNES 394

Query: 281 -GSIPEAFQHMVSLRLLSLASNE------LEGGIPKFFGNMCSLNQLYLPRNKLSGQLS- 332
             SI    +++   RL+ L   E      L+ G+         L +         G L+ 
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--QGGLTD 452

Query: 333 ELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLF 392
             +  +       ++  + L     +    D G                  + +      
Sbjct: 453 LGLSYIGQYSP--NVRWMLLGYVGES----DEG------------------LMEFSRGCP 488

Query: 393 KLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTL---KLSHDWVPAFQLKWLSLA 449
            L+ L + G  F+        + + +L+ L++     ++    L     P + ++ +   
Sbjct: 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548

Query: 450 SCK 452
              
Sbjct: 549 RVP 551

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 8/156 (5%)

Query: 728 LGFVKYLDLSSNKLCEAIPEE-ITDLVGLTALNLSRNNLTGLIPPKIGQ-LKSLDFLDLS 785
              +  L + + +  + +    +  L  L  L + ++ L   + P        L  L+LS
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88

Query: 786 RNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNK 845
            N        ++  LS L  L LS N L         L+        G   +    L   
Sbjct: 89  FNALESLSWKTVQGLS-LQELVLSGNPLH----CSCALRWLQRWEEEGLGGVPEQKLQCH 143

Query: 846 CADEESTPSPGRDDDANTVEDEDNQFITLGFYVSLT 881
                +                 N  + +G  V L 
Sbjct: 144 GQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLR 179

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 738 SNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPK-IGQLKSLDFLDLSRNHFSGNIPSS 796
           +          +     LT L +        +  + +  L  L  L + ++      P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 797 LSLLSGLSVLDLSYNSLSGKIPLGT 821
                 LS L+LS+N+L   +   T
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKT 99

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 7/101 (6%)

Query: 282 SIPEAFQHMVSLRLLSLASNELEGGIPKF-FGNMCSLNQLYLPRNKLSGQLSELIQNLSS 340
                     +L  L + + +    +       +  L  L + ++ L     +       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP- 80

Query: 341 GCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLN 381
                 L  L L  N +        + LSL+ L L  N L+
Sbjct: 81  -----RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLAS 300
            ++  L + +       +          + +L +  + L+   P+AF     L  L+L+ 
Sbjct: 31  ENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 301 NELEGGIPKFFGNMCSLNQLYLPRNKL 327
           N LE    K    + SL +L L  N L
Sbjct: 90  NALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 169 NVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPP 228
            +  +   ++ SL  L    +L  L +      +  +  + +  L  L+ L +    L  
Sbjct: 12  GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRF 70

Query: 229 INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLF-NLSRNILHLD 273
           + P     F+ +  +  L+LS N L   S+       LS   L L 
Sbjct: 71  VAPD---AFHFTPRLSRLNLSFNAL--ESLSWKTVQGLSLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 5e-04
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 559 SLSILNLANNRFSGKIPD-SMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA 617
           +L+ L + N +    +    +  L  ++ L++  + L    P +     +L  L+L  NA
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSN 677
           L       V G   +L  L L  N  H +     C L ++Q  +        +       
Sbjct: 92  LESLSWKTVQGL--SLQELVLSGNPLHCS-----CALRWLQRWEEEGLGGVPEQKLQCHG 144

Query: 678 FSMM 681
              +
Sbjct: 145 QGPL 148

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
            +   +  L L  N        P   +  +++  +DL  N +     ++F +M  L  L 
Sbjct: 28  GIPRDVTELYLDGNQFTLV---PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84

Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLS 328
           L+ N L    P+ F  + SL  L L  N +S
Sbjct: 85  LSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 10/117 (8%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLS 588
           +P  +P + T L L  N+F+ +P    N+  L++++L+NNR S     S   +  + TL 
Sbjct: 25  LPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84

Query: 589 LRNNRLNGELPS----SLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
           L  NRL   +P      LK+   LR+L L  N +   VP      L  L  L + +N
Sbjct: 85  LSYNRLR-CIPPRTFDGLKS---LRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS 790
           V  L L  N+    +P+E+++   LT ++LS N ++ L       +  L  L LS N   
Sbjct: 33  VTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 791 GNIPSSLSLLSGLSVLDLSYNSLSGKIPLG 820
              P +   L  L +L L  N +S  +P G
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDIS-VVPEG 120

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 38/160 (23%), Positives = 55/160 (34%), Gaps = 39/160 (24%)

Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
           L L  N +    P  F  +++L+ L L SN+L       F ++  L  L L  N+L    
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL---- 100

Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSH- 390
                 L S                    + D  R + LK L +  N L       L   
Sbjct: 101 ----TVLPSA-------------------VFD--RLVHLKELFMCCNKL-----TELPRG 130

Query: 391 ---LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
              L  L  L+LD N    +    F   +S+L   +L  N
Sbjct: 131 IERLTHLTHLALDQNQLKSIPHGAF-DRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 15/139 (10%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA-FQHMVSLRLL 296
            + T+ + L L DN +  + + P +F+   N+  L LG N L  ++P   F  +  L +L
Sbjct: 37  GIPTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVL 93

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGC-TVNSLEGLCLYAN 355
            L +N+L       F  +  L +L++  NKL          L  G   +  L  L L  N
Sbjct: 94  DLGTNQLTVLPSAVFDRLVHLKELFMCCNKL--------TELPRGIERLTHLTHLALDQN 145

Query: 356 DITGPIPDLGRFLSLKVLK 374
            +   IP  G F  L  L 
Sbjct: 146 QLKS-IPH-GAFDRLSSLT 162

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 237 FNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL 296
           F+  T +  LDL  N L  + +   +F+   ++  L +  N L   +P   + +  L  L
Sbjct: 84  FDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140

Query: 297 SLASNELEGGIPKFFGNMCSLNQLYLPRN 325
           +L  N+L+      F  + SL   YL  N
Sbjct: 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 238 NLSTSIETLDLSDNH---LPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSL 293
           ++      L L+DN    + S  ++  L +L +    L+L  N L   I   AF+    +
Sbjct: 26  DIPLHTTELLLNDNELGRISSDGLFGRLPHLVK----LELKRNQLT-GIEPNAFEGASHI 80

Query: 294 RLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLS 328
           + L L  N+++    K F  +  L  L L  N++S
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 10/118 (8%)

Query: 530 IPP-LPSNSTFLNLSKNKFSGLPDCWL--NFNSLSILNLANNRFSGKIPDSMGF--LHNI 584
           IP  +P ++T L L+ N+   +    L      L  L L  N+ +  I  +  F    +I
Sbjct: 23  IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNA-FEGASHI 80

Query: 585 QTLSLRNNRLNGELPSSL-KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN 641
           Q L L  N++  E+ + +     +L+ L+L  N +   V       L +L  L L SN
Sbjct: 81  QELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASN 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 40/161 (24%)

Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
           LDL  N L+      F  + SL  L L  N+L+      F  + SL  L L  N+L    
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL---- 88

Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSH- 390
               Q+L +G                   + D  +   LK L L  N L     +SL   
Sbjct: 89  ----QSLPNG-------------------VFD--KLTQLKELALNTNQL-----QSLPDG 118

Query: 391 ----LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
               L +L+ L L  N    V  +  F  +++LQ ++L DN
Sbjct: 119 VFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 14/139 (10%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
            +      LDL  N L   S+   +F+   ++  L LG N LQ      F  + SL  L+
Sbjct: 25  GIPAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82

Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGC--TVNSLEGLCLYAN 355
           L++N+L+      F  +  L +L L  N+L        Q+L  G    +  L+ L LY N
Sbjct: 83  LSTNQLQSLPNGVFDKLTQLKELALNTNQL--------QSLPDGVFDKLTQLKDLRLYQN 134

Query: 356 DITGPIPDLGRFLSLKVLK 374
            +   +PD G F  L  L+
Sbjct: 135 QLKS-VPD-GVFDRLTSLQ 151

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 42/262 (16%), Positives = 83/262 (31%), Gaps = 33/262 (12%)

Query: 189 SLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIW--LFNLSTSIETL 246
           +L  ++L+   L   +    ++      + L L+   L P     +   L +    I TL
Sbjct: 102 ALDEVNLASCQLD-PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160

Query: 247 DLSDNHLPSSSVYPWLFNLSRN--ILHLDLGFNHLQ----GSIPEAFQHMVSLRLLSLAS 300
            LS+N L ++ V   +  L+ N  + HL L    L       +         L+ L++A 
Sbjct: 161 RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220

Query: 301 NELEGGIPKFFGNM----CSLNQLYLPRNKLS----GQLSELIQNLSSGCTVNSLEGLCL 352
           N                  SL  L+L  N+LS      L +L      G     +     
Sbjct: 221 NGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR---VVVSLT 277

Query: 353 YANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFT----GVI 408
               ++    +    +  +V +   +     + + L    +L    L+ +          
Sbjct: 278 EGTAVS----EYWSVILSEVQRNLNSWDRARVQRHL----ELLLRDLEDSRGATLNPWRK 329

Query: 409 SETFFSNMSNLQMLFLADNSLT 430
           ++        ++ L     S  
Sbjct: 330 AQLLRVE-GEVRALLEQLGSSG 350

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 18/119 (15%)

Query: 315 CSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLK 374
               +  L +  ++        +  +   +NS++ +    +DI   +  +    +++ L 
Sbjct: 19  AETIKANLKKKSVT--------DAVTQNELNSIDQIIANNSDIKS-VQGIQYLPNVRYLA 69

Query: 375 LGENHLNGTINKSLS---HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
           LG N L       +S    L  L  L L GN    +     F  ++NL+ L L +N L 
Sbjct: 70  LGGNKL-----HDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQ 122

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 25/201 (12%)

Query: 177 SVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWL 236
           SV      + L+S+  +  +  ++         +  L +++ L L    L  I+      
Sbjct: 30  SVTDAVTQNELNSIDQIIANNSDIKSVQ----GIQYLPNVRYLALGGNKLHDIS-----A 80

Query: 237 FNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPE-AFQHMVSLRL 295
               T++  L L+ N L   S+   +F+   N+  L L  N LQ S+P+  F  + +L  
Sbjct: 81  LKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137

Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGC--TVNSLEGLCLY 353
           L+LA N+L+      F  + +L +L L  N+L        Q+L  G    +  L+ L LY
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL--------QSLPEGVFDKLTQLKDLRLY 189

Query: 354 ANDITGPIPDLGRFLSLKVLK 374
            N +   +PD G F  L  L+
Sbjct: 190 QNQLKS-VPD-GVFDRLTSLQ 208

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 4e-04
 Identities = 28/201 (13%), Positives = 64/201 (31%), Gaps = 36/201 (17%)

Query: 104 GKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLS 163
             +SP L  +  L +L +       + +         L+ L +  G     +     D+ 
Sbjct: 162 VDLSPVLDAMPLLNNLKIKG----TNNLSIGKKPRPNLKSLEIISGGLPDSVV---EDIL 214

Query: 164 GFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSD-------WFQVVSQLHSL 216
           G                    S L +L  L L         D             +  +L
Sbjct: 215 G--------------------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254

Query: 217 KTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSR--NILHLDL 274
           K L +       +        ++   +ET+D+S   L        L ++ +  ++  +++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314

Query: 275 GFNHLQGSIPEAFQHMVSLRL 295
            +N+L   + +  Q  + +++
Sbjct: 315 KYNYLSDEMKKELQKSLPMKI 335

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 5e-04
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 16/99 (16%)

Query: 732 KYLDL---SSNKLCEAIPEEITDLVG------LTALNLSRNNLTGLIPPKIGQ---LKSL 779
           + L L     +   +        L        L  L +       ++     +   L  L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 780 DFLDLSRNHFSGN----IPSSLSLLSGLSVLDLSYNSLS 814
           + +D+S    +      +   +  +  L  +++ YN LS
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 12/120 (10%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEA-FQHMVSLRLL 296
            + +S   L+L  N L   S+   +F+    +  L L  N +Q S+P+  F  +  L +L
Sbjct: 25  GIPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTIL 81

Query: 297 SLASNELEGGIPK-FFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAN 355
            L  N+L+  +P   F  +  L +L L  N+L      +   L+      SL+ + L+ N
Sbjct: 82  YLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT------SLQKIWLHTN 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	927
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.81
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.81
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.21
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.77
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.51

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.9e-91  Score=848.50  Aligned_cols=707  Identities=30%  Similarity=0.444  Sum_probs=493.4

Q ss_pred             CCCHHHHHHHHHhhhcCcCCCCCcCCCCCCCCCCCCccccceeecCCCCCEEEEECCCCchhhhhccccccc---cCccc
Q 047797           34 RCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGK---ISPAL  110 (927)
Q Consensus        34 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~---~~~~l  110 (927)
                      .+.++|++||++||+++.||. .+++|+   .+++||+|+||+|+  .++|++|+|++        ..+.|.   +|+++
T Consensus         8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~--------~~l~g~~~~l~~~l   73 (768)
T 3rgz_A            8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS--------KPLNVGFSAVSSSL   73 (768)
T ss_dssp             CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT--------SCCCEEHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC--------CCcCCccCccChhH
Confidence            446889999999999999998 999997   47899999999997  68999999999        789998   99999


Q ss_pred             cCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCc--cCCCCCCCcEEecCCCCccCCCCcccccCCC
Q 047797          111 LKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPH--PFRDLSGFEYFNVENSNLFSVGSLERLSHLS  188 (927)
Q Consensus       111 ~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~  188 (927)
                      .++++|+.++++.+.+..  +|..++.+++|++|+|++|.+.+.+|.  .++++++|++|++++|.+........+.+++
T Consensus        74 ~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  151 (768)
T 3rgz_A           74 LSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN  151 (768)
T ss_dssp             TTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred             hccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence            999999999999998754  678999999999999999999999998  9999999999999998875444334457889


Q ss_pred             CCcEEECCCccCCCCCchHHh---hcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhc
Q 047797          189 SLRHLDLSCINLTKSSDWFQV---VSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNL  265 (927)
Q Consensus       189 ~L~~L~Ls~n~l~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~  265 (927)
                      +|++|++++|.+++.  .+..   +.++++|++|++++|.+++..+    ...+ ++|++|++++|.+++ .+|. +.++
T Consensus       152 ~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l-~~L~~L~Ls~n~l~~-~~~~-l~~l  222 (768)
T 3rgz_A          152 SLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD----VSRC-VNLEFLDVSSNNFST-GIPF-LGDC  222 (768)
T ss_dssp             TCSEEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCB----CTTC-TTCCEEECCSSCCCS-CCCB-CTTC
T ss_pred             CCCEEECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCC----cccC-CcCCEEECcCCcCCC-CCcc-cccC
Confidence            999999999988763  2233   6778888888888887776554    2444 667777777776655 4444 4444


Q ss_pred             ccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCC
Q 047797          266 SRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVN  345 (927)
Q Consensus       266 ~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~  345 (927)
                      . +|++|++++|.+++.+|..++.+++|++|++++|++++.+|..  .+++|++|++++|.+++.+|..+...       
T Consensus       223 ~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~-------  292 (768)
T 3rgz_A          223 S-ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA-------  292 (768)
T ss_dssp             C-SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTT-------
T ss_pred             C-CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhh-------
Confidence            4 6666666666666666666666666666666666666555543  45555555555555554444433322       


Q ss_pred             CccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEcc
Q 047797          346 SLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLA  425 (927)
Q Consensus       346 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  425 (927)
                                           +++|++|++++|.+++.+|..++++++|++|++++|++++.+|...+..+++|++|+++
T Consensus       293 ---------------------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          293 ---------------------CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             ---------------------CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             ---------------------cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence                                 24455555555555444444455555555555555555444444444455555555555


Q ss_pred             CCcceecccCCccccc-ccceeecccccCCCCCChhhhc--CccccEEEccCCccCCCccchHHhhccccceeecccccc
Q 047797          426 DNSLTLKLSHDWVPAF-QLKWLSLASCKMGPHFPNWLQT--QNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHI  502 (927)
Q Consensus       426 ~n~l~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~l~~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l  502 (927)
                      +|++++..+..+..+. +|++|++++|.+.+..|..+..  +++|++|++++|.+++.+|..+... ++|++|++++|++
T Consensus       352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l  430 (768)
T 3rgz_A          352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYL  430 (768)
T ss_dssp             SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEE
T ss_pred             CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcc
Confidence            5555444444444443 4555555555544444444443  4555555555555555555544332 3555555555555


Q ss_pred             cCCCCCccccCCCCcEEeccCCccCCCCCCC---CCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccCCCcc
Q 047797          503 SGKLPDLSVLKSDDIVIDISSNNFDGPIPPL---PSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSM  578 (927)
Q Consensus       503 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~  578 (927)
                      ++.+|..+..+++|+.+++++|.+.+.+|..   +++|++|++++|++++ +|..+.++++|++|++++|++++.+|..+
T Consensus       431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence            5555555555555555555555554444432   3456666666666665 66666677777777777777777777777


Q ss_pred             cccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCc-----------------
Q 047797          579 GFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSN-----------------  641 (927)
Q Consensus       579 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n-----------------  641 (927)
                      +.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..++ ....+..+++..+                 
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHG  589 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhhhhccccccccccccccccccccc
Confidence            7777777777777777777777777777777777777777777776665 3444433333221                 


Q ss_pred             -----ccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEe
Q 047797          642 -----NFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLT  716 (927)
Q Consensus       642 -----~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  716 (927)
                           .+.+..+..+..++.++.++++.|.++|.+|..+                                         
T Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~-----------------------------------------  628 (768)
T 3rgz_A          590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-----------------------------------------  628 (768)
T ss_dssp             SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC-----------------------------------------
T ss_pred             cccccccccccchhhhccccccccccccceecccCchhh-----------------------------------------
Confidence                 1122223333333344444444444444444433                                         


Q ss_pred             eecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCcc
Q 047797          717 WKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSS  796 (927)
Q Consensus       717 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  796 (927)
                               ..++.|+.|||++|+++|.+|..|+++++|+.|+|++|+++|.+|+.++++++|++|||++|+++|.+|..
T Consensus       629 ---------~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          629 ---------DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             ---------SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             ---------hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence                     44556699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCCCCCCCCCC
Q 047797          797 LSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKCADE  849 (927)
Q Consensus       797 l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~C~~~  849 (927)
                      ++.+++|++||+++|+++|.||..+++++|...+|.||+++||.|+. .|...
T Consensus       700 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~  751 (768)
T 3rgz_A          700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPS  751 (768)
T ss_dssp             GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSC
T ss_pred             HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCC
Confidence            99999999999999999999999999999999999999999999987 89543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.1e-70  Score=666.06  Aligned_cols=619  Identities=28%  Similarity=0.385  Sum_probs=520.2

Q ss_pred             cCccccCCCCCCeeeCCCCCCCCCCCCc--cccCCCCCCEEECCCCCCCCCCCccC-CCCCCCcEEecCCCCccCCCCcc
Q 047797          106 ISPALLKLRGLRHLDLSKNDFGGSPVPE--FIGSLSKLRYLNLSCGTPSSKIPHPF-RDLSGFEYFNVENSNLFSVGSLE  182 (927)
Q Consensus       106 ~~~~l~~l~~L~~L~Ls~n~~~~~~lp~--~l~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~Ls~~~~~~~~~~~  182 (927)
                      +|+.++++++|++|||++|.+.+. +|.  .++++++|++|++++|.+.+.+|..+ +++++|++|++++|.+.......
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  170 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG  170 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence            457899999999999999999985 887  89999999999999999999998877 89999999999999875433222


Q ss_pred             --cccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcch
Q 047797          183 --RLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYP  260 (927)
Q Consensus       183 --~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~  260 (927)
                        .+.++++|++|++++|.+++...    +..+++|++|++++|.+++..+  . +.++ ++|++|++++|.+++ .+|.
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~--~-l~~l-~~L~~L~Ls~n~l~~-~~~~  241 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIP--F-LGDC-SALQHLDISGNKLSG-DFSR  241 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCC--B-CTTC-CSCCEEECCSSCCCS-CHHH
T ss_pred             hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCc--c-cccC-CCCCEEECcCCcCCC-cccH
Confidence              17899999999999999987533    3789999999999999999877  3 6677 999999999999987 7888


Q ss_pred             hHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCC-CCCcEEeCCCCCCCCchhHHHhhcc
Q 047797          261 WLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNM-CSLNQLYLPRNKLSGQLSELIQNLS  339 (927)
Q Consensus       261 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~  339 (927)
                      .+..+. +|++|++++|.+++.+|..  .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..++.++
T Consensus       242 ~l~~l~-~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~  318 (768)
T 3rgz_A          242 AISTCT-ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS  318 (768)
T ss_dssp             HTTTCS-SCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred             HHhcCC-CCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence            888887 9999999999999888775  89999999999999999999888775 9999999999999999999999888


Q ss_pred             CCCcCCCccEEEccCCCCcccCCC--CCCCCCCCEEEccCCcCCCcchhhhhccC-CCCEEecCCcccccccChhhhhc-
Q 047797          340 SGCTVNSLEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHLNGTINKSLSHLF-KLETLSLDGNSFTGVISETFFSN-  415 (927)
Q Consensus       340 ~~~~~~~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~-  415 (927)
                            +|++|++++|.+.+.+|.  +..+++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|.. +.. 
T Consensus       319 ------~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~-~~~~  391 (768)
T 3rgz_A          319 ------LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN-LCQN  391 (768)
T ss_dssp             ------TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT-TTCS
T ss_pred             ------CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh-hhhc
Confidence                  999999999999877775  88999999999999999888888888887 8999999999998877764 444 


Q ss_pred             -CCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccce
Q 047797          416 -MSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFF  494 (927)
Q Consensus       416 -l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~  494 (927)
                       +++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+... ++|++
T Consensus       392 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~  470 (768)
T 3rgz_A          392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLET  470 (768)
T ss_dssp             TTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCE
T ss_pred             ccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceE
Confidence             7789999999998888777777777777777777777777777777777777777777777777777665443 46677


Q ss_pred             eecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCcccccc
Q 047797          495 LNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGK  573 (927)
Q Consensus       495 L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~  573 (927)
                      |++++|++++.+|..+..+                     ++|++|++++|++++ +|.++..+++|++|++++|++++.
T Consensus       471 L~L~~N~l~~~~p~~l~~l---------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  529 (768)
T 3rgz_A          471 LILDFNDLTGEIPSGLSNC---------------------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN  529 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGC---------------------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred             EEecCCcccCcCCHHHhcC---------------------CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence            7777766666666554444                     456666666677765 777788888888888888888888


Q ss_pred             CCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCC----------------------cCCCCCChhhhhcCc
Q 047797          574 IPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN----------------------ALFGEVPTCVGGSLQ  631 (927)
Q Consensus       574 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N----------------------~l~~~~p~~~~~~l~  631 (927)
                      +|..++.+++|++|++++|+++|.+|..+..+..+..+++..+                      .+.+..+..+. .++
T Consensus       530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~  608 (768)
T 3rgz_A          530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLS  608 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG-GGG
T ss_pred             CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh-ccc
Confidence            8888888888888888888888888887777666555544331                      13345555555 578


Q ss_pred             cCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecc
Q 047797          632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLD  711 (927)
Q Consensus       632 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (927)
                      .++.++++.|.+.|.+|..+..+++|+.|||++|+++|.+|..+++++.|                              
T Consensus       609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L------------------------------  658 (768)
T 3rgz_A          609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL------------------------------  658 (768)
T ss_dssp             GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC------------------------------
T ss_pred             cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC------------------------------
Confidence            88889999999999999999999999999999999999999999887665                              


Q ss_pred             eeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcc
Q 047797          712 NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG  791 (927)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  791 (927)
                                          +.|||++|+++|.+|..|+++++|++|||++|+++|.+|..++++++|++||+++|+++|
T Consensus       659 --------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          659 --------------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             --------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             --------------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence                                999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccCCCCCCeEeCcCCcCcccCC
Q 047797          792 NIPSSLSLLSGLSVLDLSYNSLSGKIP  818 (927)
Q Consensus       792 ~~p~~l~~l~~L~~L~ls~N~l~~~~p  818 (927)
                      .+|.. ..+..+....+.+|+.-|.-|
T Consensus       719 ~iP~~-~~~~~~~~~~~~gN~~Lcg~~  744 (768)
T 3rgz_A          719 PIPEM-GQFETFPPAKFLNNPGLCGYP  744 (768)
T ss_dssp             ECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred             cCCCc-hhhccCCHHHhcCCchhcCCC
Confidence            99975 334456666778887555434

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.4e-59  Score=564.44  Aligned_cols=537  Identities=23%  Similarity=0.239  Sum_probs=383.0

Q ss_pred             hcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhc
Q 047797          210 VSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQH  289 (927)
Q Consensus       210 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  289 (927)
                      ++++++|++|++++|.+++.++  ..+.++ ++|++|++++|++++ ..|..+..+. +|++|++++|.+++..|..+++
T Consensus        69 ~~~l~~L~~L~L~~n~l~~l~~--~~~~~l-~~L~~L~L~~n~l~~-~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~  143 (680)
T 1ziw_A           69 CQKLPMLKVLNLQHNELSQLSD--KTFAFC-TNLTELHLMSNSIQK-IKNNPFVKQK-NLITLDLSHNGLSSTKLGTQVQ  143 (680)
T ss_dssp             HHHCTTCCEEECCSSCCCCCCT--TTTTTC-TTCSEEECCSSCCCC-CCSCTTTTCT-TCCEEECCSSCCSCCCCCSSSC
T ss_pred             HhcccCcCEEECCCCccCccCh--hhhccC-CCCCEEECCCCccCc-cChhHccccC-CCCEEECCCCcccccCchhhcc
Confidence            3344444444444444444443  234455 777777777777754 2233444555 7777777777777666666777


Q ss_pred             CCCCCEEEccCCcCCCcCccccc--CCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-C--
Q 047797          290 MVSLRLLSLASNELEGGIPKFFG--NMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-L--  364 (927)
Q Consensus       290 l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l--  364 (927)
                      +++|++|++++|.+++..+..+.  .+++|++|++++|.+++..|..+..+.      +|+.|++.++.+.+.... +  
T Consensus       144 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~l~~~~l~~~~~~~~~~  217 (680)
T 1ziw_A          144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG------RLFGLFLNNVQLGPSLTEKLCL  217 (680)
T ss_dssp             CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSS------EECEEECTTCCCHHHHHHHHHH
T ss_pred             cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhh------hhhhhhccccccChhhHHHHHH
Confidence            77777777777777766665543  446677777777777776666666666      677777766665432111 0  


Q ss_pred             -CCCCCCCEEEccCCcCCCcchhhhhccCC--CCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCccccc
Q 047797          365 -GRFLSLKVLKLGENHLNGTINKSLSHLFK--LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAF  441 (927)
Q Consensus       365 -~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  441 (927)
                       ...++|+.|++++|.+++..|..+..++.  |++|++++|++++..+. .|..+++|++|++++|.+.+..+..+..++
T Consensus       218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  296 (680)
T 1ziw_A          218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLF  296 (680)
T ss_dssp             HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCT
T ss_pred             HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc-cccCcccccEeeCCCCccCccChhhhcCCC
Confidence             12356777777777776666666666543  77777777776644433 466667777777777776666666666666


Q ss_pred             ccceeecccccCCCC-----CCh----hhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCcccc
Q 047797          442 QLKWLSLASCKMGPH-----FPN----WLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVL  512 (927)
Q Consensus       442 ~L~~L~L~~~~~~~~-----~~~----~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  512 (927)
                      +|+.|++++|...+.     +|.    .+..+++|++|++++|.                         +++..+..+..
T Consensus       297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-------------------------l~~~~~~~~~~  351 (680)
T 1ziw_A          297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-------------------------IPGIKSNMFTG  351 (680)
T ss_dssp             TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-------------------------BCCCCTTTTTT
T ss_pred             CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-------------------------cCCCChhHhcc
Confidence            666666665543321     111    34444445555555544                         44444444444


Q ss_pred             CCCCcEEeccCCccCCCC-CC------CCCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccCC-CcccccCc
Q 047797          513 KSDDIVIDISSNNFDGPI-PP------LPSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIP-DSMGFLHN  583 (927)
Q Consensus       513 ~~~l~~l~l~~n~~~~~~-~~------~~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~  583 (927)
                      +++|+++++++|.+.... +.      ...+|+.|++++|++++ .|..+..+++|++|++++|.+.+.+| ..|.++++
T Consensus       352 l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~  431 (680)
T 1ziw_A          352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN  431 (680)
T ss_dssp             CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTT
T ss_pred             ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccc
Confidence            555555555555432211 11      12579999999999999 67789999999999999999988776 67899999


Q ss_pred             ccEEEcccccccccCCccccCCCCCCEEecCCCcCC--CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEE
Q 047797          584 IQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF--GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLD  661 (927)
Q Consensus       584 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  661 (927)
                      |++|++++|++.+..+..|..+++|++|++++|.+.  +.+|..+. .+++|++|++++|++++..+..+.++++|++|+
T Consensus       432 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~  510 (680)
T 1ziw_A          432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILD  510 (680)
T ss_dssp             CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEe
Confidence            999999999999999999999999999999999986  56787776 799999999999999988888899999999999


Q ss_pred             ccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcc
Q 047797          662 LSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL  741 (927)
Q Consensus       662 Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l  741 (927)
                      +++|++++..+..+..-                                          ....+..+++|+.|+|++|++
T Consensus       511 Ls~N~l~~~~~~~~~~~------------------------------------------~~~~~~~l~~L~~L~L~~N~l  548 (680)
T 1ziw_A          511 LQHNNLARLWKHANPGG------------------------------------------PIYFLKGLSHLHILNLESNGF  548 (680)
T ss_dssp             CCSSCCGGGGSTTSTTS------------------------------------------CCCTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCccccchhhccCC------------------------------------------cchhhcCCCCCCEEECCCCCC
Confidence            99999986543322110                                          011234567789999999999


Q ss_pred             cccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCcccc-CCCCCCeEeCcCCcCcccCCC-
Q 047797          742 CEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLS-LLSGLSVLDLSYNSLSGKIPL-  819 (927)
Q Consensus       742 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p~-  819 (927)
                      +.+.+..|.++++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+++++++|++.|.|+. 
T Consensus       549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~  628 (680)
T 1ziw_A          549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI  628 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCC
T ss_pred             CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccH
Confidence            976667899999999999999999988888899999999999999999998888787 789999999999999999996 


Q ss_pred             CCcCCCC
Q 047797          820 GTQLQSF  826 (927)
Q Consensus       820 ~~~~~~~  826 (927)
                      .++..+.
T Consensus       629 ~~~~~~~  635 (680)
T 1ziw_A          629 AWFVNWI  635 (680)
T ss_dssp             SSEECCS
T ss_pred             HHHHHHH
Confidence            4444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.3e-57  Score=545.98  Aligned_cols=591  Identities=22%  Similarity=0.235  Sum_probs=416.3

Q ss_pred             cccccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCC
Q 047797          100 KFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVG  179 (927)
Q Consensus       100 ~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~  179 (927)
                      ..++ .+|..+.  +++++|+|++|.+++. .+..++++++|++|++++|.+.+..|..|+++++|++|++++|.+...+
T Consensus        14 ~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~   89 (680)
T 1ziw_A           14 LKLT-QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS   89 (680)
T ss_dssp             SCCS-SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred             CCcc-ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC
Confidence            3343 4565554  7899999999999885 5667999999999999999999988988999999999999888765432


Q ss_pred             CcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcc
Q 047797          180 SLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVY  259 (927)
Q Consensus       180 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~  259 (927)
                       ...++++++|++|++++|.+++..  +..++++++|++|++++|.+++..+  ..+.++ ++|++|++++|.+++ ..+
T Consensus        90 -~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~L~~n~l~~-~~~  162 (680)
T 1ziw_A           90 -DKTFAFCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKL--GTQVQL-ENLQELLLSNNKIQA-LKS  162 (680)
T ss_dssp             -TTTTTTCTTCSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCC--CSSSCC-TTCCEEECCSSCCCC-BCH
T ss_pred             -hhhhccCCCCCEEECCCCccCccC--hhHccccCCCCEEECCCCcccccCc--hhhccc-ccCCEEEccCCcccc-cCH
Confidence             134778888888888888876642  2456777888888888887777666  344555 777777777777754 333


Q ss_pred             hhHh--hcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCccccc---CCCCCcEEeCCCCCCCCchhHH
Q 047797          260 PWLF--NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFG---NMCSLNQLYLPRNKLSGQLSEL  334 (927)
Q Consensus       260 ~~l~--~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~~~~~  334 (927)
                      ..+.  ... +|++|++++|.+++..|..|..+++|+.|+++++.+.......+.   ..++|+.|++++|.+++..|..
T Consensus       163 ~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~  241 (680)
T 1ziw_A          163 EELDIFANS-SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT  241 (680)
T ss_dssp             HHHGGGTTC-EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred             HHhhccccc-cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence            3322  223 677777777777766666677777777777776665432221111   2356666777766666666666


Q ss_pred             HhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhh
Q 047797          335 IQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFF  413 (927)
Q Consensus       335 l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  413 (927)
                      +..+.    .++|++|++++|.+++..+. ++.+++|++|++++|.+++..|..+.++++|++|++++|...+.++..  
T Consensus       242 ~~~l~----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--  315 (680)
T 1ziw_A          242 FLGLK----WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA--  315 (680)
T ss_dssp             TGGGG----GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------
T ss_pred             hhccC----cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc--
Confidence            65554    01366666666666665555 666666666666666666666666666666666666655433221100  


Q ss_pred             hcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCC-ccch-HHhh-cc
Q 047797          414 SNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDT-IPDW-FWDL-SI  490 (927)
Q Consensus       414 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~-~~~~-~~~~-~~  490 (927)
                                    .+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... ++.. +... .+
T Consensus       316 --------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~  381 (680)
T 1ziw_A          316 --------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS  381 (680)
T ss_dssp             ---------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred             --------------cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence                          01111122444555666666666666666666677777777777777764322 1111 1111 13


Q ss_pred             ccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CC-cccccCCCCCEEEccCc
Q 047797          491 ELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LP-DCWLNFNSLSILNLANN  568 (927)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp-~~~~~l~~L~~L~Ls~n  568 (927)
                      +|+.|++++|++++..|..+..                     +++|++|++++|++++ +| ..+.++++|++|++++|
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~---------------------l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n  440 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSW---------------------LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN  440 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTT---------------------CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred             cCceEECCCCCCCeEChhhhhC---------------------CCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence            5666666666666555544333                     3456667777777765 55 57788899999999999


Q ss_pred             cccccCCCcccccCcccEEEccccccc--ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccccee
Q 047797          569 RFSGKIPDSMGFLHNIQTLSLRNNRLN--GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN  646 (927)
Q Consensus       569 ~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  646 (927)
                      ++.+..+..|..+++|+.|++++|.+.  +..|..|.++++|++|++++|++++..|..+. .+++|++|++++|++++.
T Consensus       441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~~  519 (680)
T 1ziw_A          441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE-GLEKLEILDLQHNNLARL  519 (680)
T ss_dssp             SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCGGG
T ss_pred             CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc-cccccCEEeCCCCCcccc
Confidence            999888888999999999999999887  56788899999999999999999765555554 789999999999999865


Q ss_pred             cC--------ccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeee
Q 047797          647 IP--------FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWK  718 (927)
Q Consensus       647 ~~--------~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (927)
                      .+        ..+.++++|++|++++|+++...+..|.+++.|                                     
T Consensus       520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-------------------------------------  562 (680)
T 1ziw_A          520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL-------------------------------------  562 (680)
T ss_dssp             GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred             chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc-------------------------------------
Confidence            32        237889999999999999985444556665544                                     


Q ss_pred             cccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc-CCCCCCeEeCCCCcCcccCC
Q 047797          719 GSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG-QLKSLDFLDLSRNHFSGNIP  794 (927)
Q Consensus       719 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p  794 (927)
                                   +.|||++|++++.++..|.++++|++|+|++|++++.+|..+. .+++|+.|++++|++...-+
T Consensus       563 -------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          563 -------------KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             -------------CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             -------------ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence                         9999999999998888899999999999999999999888887 78999999999999987544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.3e-55  Score=539.33  Aligned_cols=558  Identities=22%  Similarity=0.250  Sum_probs=332.9

Q ss_pred             CCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCC-CccCCCCCCCcEEecCCCCccCCCCcccccCCCCCc
Q 047797          113 LRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKI-PHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLR  191 (927)
Q Consensus       113 l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~-p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~  191 (927)
                      .++|++|||++|.+++. .|..++++++|++|+|++|...+.+ |..|+++++|++|+|++|.+...             
T Consensus        23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-------------   88 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-------------   88 (844)
T ss_dssp             CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-------------
T ss_pred             CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-------------
Confidence            45677777777777664 5666777777777777777555554 55666666666666665554322             


Q ss_pred             EEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccE
Q 047797          192 HLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILH  271 (927)
Q Consensus       192 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~  271 (927)
                                    .+..++++++|++|++++|.+++..+....+.++ ++|++|++++|.+++...++.+.++. +|++
T Consensus        89 --------------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~L~-~L~~  152 (844)
T 3j0a_A           89 --------------HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL-KALTRLDLSKNQIRSLYLHPSFGKLN-SLKS  152 (844)
T ss_dssp             --------------CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC-SSCCEEEEESCCCCCCCCCGGGGTCS-SCCE
T ss_pred             --------------CHhHccCCcccCEeeCcCCCCCcccccCcccccc-CCCCEEECCCCcccccccchhHhhCC-CCCE
Confidence                          1234444555555555555554433211123444 66666666666665422233444444 6666


Q ss_pred             EEccCCcCcCCcchhhhcC--CCCCEEEccCCcCCCcCcccccCCCC------CcEEeCCCCCCCCchhHHHhhccCCCc
Q 047797          272 LDLGFNHLQGSIPEAFQHM--VSLRLLSLASNELEGGIPKFFGNMCS------LNQLYLPRNKLSGQLSELIQNLSSGCT  343 (927)
Q Consensus       272 L~Ls~n~i~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~------L~~L~L~~n~l~~~~~~~l~~l~~~~~  343 (927)
                      |++++|.+++..+..+..+  ++|+.|++++|.+.+..|..+..+++      |++|++++|.+++..+..+....   .
T Consensus       153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l---~  229 (844)
T 3j0a_A          153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI---S  229 (844)
T ss_dssp             EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS---C
T ss_pred             EECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc---C
Confidence            6666666666666666655  66666777766666666655555444      67777777766665555444321   1


Q ss_pred             CCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhcc--CCCCEEecCCcccccccChhhhhcCCCCCE
Q 047797          344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHL--FKLETLSLDGNSFTGVISETFFSNMSNLQM  421 (927)
Q Consensus       344 ~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  421 (927)
                      ..+++.+.++.+....              +...+.+.+..+..|..+  ++|++|++++|.+.+..+. .|..+++|+.
T Consensus       230 ~~~l~~L~l~~~~~~~--------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~  294 (844)
T 3j0a_A          230 KSQAFSLILAHHIMGA--------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDLKV  294 (844)
T ss_dssp             SCCBSEEECCSSCCBC--------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCCCE
T ss_pred             cccccceecccccccc--------------cccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCCCE
Confidence            1245555554332211              011222332333333332  4555555555555533332 3455555555


Q ss_pred             EEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeeccccc
Q 047797          422 LFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNH  501 (927)
Q Consensus       422 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~  501 (927)
                      |++++|++.+..+..                        +..+++|++|++++|.+.+..|..+..              
T Consensus       295 L~L~~n~i~~~~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------  336 (844)
T 3j0a_A          295 LNLAYNKINKIADEA------------------------FYGLDNLQVLNLSYNLLGELYSSNFYG--------------  336 (844)
T ss_dssp             EEEESCCCCEECTTT------------------------TTTCSSCCEEEEESCCCSCCCSCSCSS--------------
T ss_pred             EECCCCcCCCCChHH------------------------hcCCCCCCEEECCCCCCCccCHHHhcC--------------
Confidence            555555555443333                        334444444444444443322222111              


Q ss_pred             ccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCC-cccccCCCCCEEEccCccccccCCCcccc
Q 047797          502 ISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGF  580 (927)
Q Consensus       502 l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  580 (927)
                                                      +++|++|++++|+++.++ ..+..+++|++|++++|.+++.     ..
T Consensus       337 --------------------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~  379 (844)
T 3j0a_A          337 --------------------------------LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HF  379 (844)
T ss_dssp             --------------------------------CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SS
T ss_pred             --------------------------------CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cC
Confidence                                            112333333333333322 2345556666666666666532     12


Q ss_pred             cCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCc-cccCCCCCCE
Q 047797          581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPF-QLCHLAFIQV  659 (927)
Q Consensus       581 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~  659 (927)
                      +++|+.|++++|+++ .+|..   ..+++.|++++|++.+.-.......+++|++|++++|++++..+. .+..+++|+.
T Consensus       380 ~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~  455 (844)
T 3j0a_A          380 IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ  455 (844)
T ss_dssp             CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCB
T ss_pred             CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccc
Confidence            566677777777766 33332   356777777777775432222223577888888888888755433 3456788999


Q ss_pred             EEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCC
Q 047797          660 LDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN  739 (927)
Q Consensus       660 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  739 (927)
                      |++++|.+++..+..+                                             ....+..+++|+.|||++|
T Consensus       456 L~Ls~N~l~~~~~~~~---------------------------------------------~~~~~~~l~~L~~L~Ls~N  490 (844)
T 3j0a_A          456 LFLGENMLQLAWETEL---------------------------------------------CWDVFEGLSHLQVLYLNHN  490 (844)
T ss_dssp             CEEESCCCSSSCCSCC---------------------------------------------CSSCSSCBCCEECCCCCHH
T ss_pred             ccCCCCcccccccccc---------------------------------------------chhhhcCcccccEEECCCC
Confidence            9999998874332111                                             0111234566799999999


Q ss_pred             cccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCC
Q 047797          740 KLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       740 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      ++++.+|..|.++++|++|+|++|++++..|..+.  ++|+.|||++|++++.+|..|.   +|++|++++|++.|.|+.
T Consensus       491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL  565 (844)
T ss_dssp             HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred             cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence            99999999999999999999999999998887776  8999999999999999998764   789999999999999996


Q ss_pred             CCcCCCCcccccCCCCCCCCCCCCCCCCCCCC
Q 047797          820 GTQLQSFNASVYAGNLELCGLPLPNKCADEES  851 (927)
Q Consensus       820 ~~~~~~~~~~~~~~n~~lc~~~~~~~C~~~~~  851 (927)
                      ..+..++    ..++..+||.+....|..++.
T Consensus       566 ~~f~~~~----~~~~~~~~~~~~~~~C~~p~~  593 (844)
T 3j0a_A          566 STFINWL----NHTNVTIAGPPADIYCVYPDS  593 (844)
T ss_dssp             CSHHHHH----HHTTTTTCCCGGGCCCSSCSS
T ss_pred             HHHHHHH----HhcCcccccccccCccCCchh
Confidence            5443332    345677888888888976544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.3e-54  Score=511.27  Aligned_cols=532  Identities=21%  Similarity=0.164  Sum_probs=367.7

Q ss_pred             ccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccc
Q 047797          105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERL  184 (927)
Q Consensus       105 ~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l  184 (927)
                      .+|..+..  ++++|||++|.+++. .|..++++++|++|++++|.+.+..|..|+++++|++|++++|.          
T Consensus        26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~----------   92 (606)
T 3t6q_A           26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP----------   92 (606)
T ss_dssp             SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC----------
T ss_pred             cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc----------
Confidence            45544432  577777777777764 56677777777777777777766666655555555555553332          


Q ss_pred             cCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhh
Q 047797          185 SHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFN  264 (927)
Q Consensus       185 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~  264 (927)
                                                               +++..+  ..+.++ +                       
T Consensus        93 -----------------------------------------l~~~~~--~~~~~l-~-----------------------  105 (606)
T 3t6q_A           93 -----------------------------------------LIFMAE--TALSGP-K-----------------------  105 (606)
T ss_dssp             -----------------------------------------CSEECT--TTTSSC-T-----------------------
T ss_pred             -----------------------------------------ccccCh--hhhccc-c-----------------------
Confidence                                                     222222  122222 4                       


Q ss_pred             cccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcC
Q 047797          265 LSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTV  344 (927)
Q Consensus       265 ~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~  344 (927)
                         +|++|++++|.+++..+..|+++++|++|++++|++.+..+..+..+++|++|++++|.+++..+..++.++     
T Consensus       106 ---~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----  177 (606)
T 3t6q_A          106 ---ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ-----  177 (606)
T ss_dssp             ---TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT-----
T ss_pred             ---cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc-----
Confidence               555555555555555555677777777777777777764444444577888888888888777777777777     


Q ss_pred             CCcc--EEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCccccc----ccChhhhhcCC-
Q 047797          345 NSLE--GLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG----VISETFFSNMS-  417 (927)
Q Consensus       345 ~~L~--~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~~l~-  417 (927)
                       +|+  .|++++|.+.+..|......+|++|++++|.   ..+..+..+.+++...+....+.+    .++...+..+. 
T Consensus       178 -~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~  253 (606)
T 3t6q_A          178 -QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE  253 (606)
T ss_dssp             -TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred             -ccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence             777  7788888888777774455678888888876   445566666665544443322211    12222233222 


Q ss_pred             -CCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceee
Q 047797          418 -NLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLN  496 (927)
Q Consensus       418 -~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~  496 (927)
                       +|+.|++++|.++...+..|..+++|++|++++|.+. .+|..+..+++                         |++|+
T Consensus       254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~-------------------------L~~L~  307 (606)
T 3t6q_A          254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLST-------------------------LKKLV  307 (606)
T ss_dssp             SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTT-------------------------CCEEE
T ss_pred             CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhccccc-------------------------CCEEE
Confidence             4555555555555444444444444444444444444 33444444444                         44444


Q ss_pred             cccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CC-cccccCCCCCEEEccCccccccC
Q 047797          497 LSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LP-DCWLNFNSLSILNLANNRFSGKI  574 (927)
Q Consensus       497 Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp-~~~~~l~~L~~L~Ls~n~l~~~~  574 (927)
                      +++|++++..|..+..++                     +|++|++++|.+.+ +| ..+..+++|++|++++|.+.+..
T Consensus       308 l~~n~l~~~~~~~~~~l~---------------------~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          308 LSANKFENLCQISASNFP---------------------SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             CTTCCCSBGGGGCGGGCT---------------------TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             CccCCcCcCchhhhhccC---------------------cCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence            444444443333333333                     34444444444443 33 34677888889999988888765


Q ss_pred             --CCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCcccc
Q 047797          575 --PDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLC  652 (927)
Q Consensus       575 --~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  652 (927)
                        +..+..+++|++|++++|++.+..|..|..+++|++|++++|++.+..|......+++|++|++++|.+.+..|..+.
T Consensus       367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  446 (606)
T 3t6q_A          367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD  446 (606)
T ss_dssp             ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred             CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence              777888899999999999998888888999999999999999987776655334789999999999999988888899


Q ss_pred             CCCCCCEEEccccccccccc---hhhccccccccccCCCCccccccccccccccceeeeecceeEEeeeccccccccccc
Q 047797          653 HLAFIQVLDLSLNNISGKIP---KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLG  729 (927)
Q Consensus       653 ~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  729 (927)
                      .+++|++|++++|++++...   ..+..                                                  ++
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------------------------------------------------l~  476 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQKTNSLQT--------------------------------------------------LG  476 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEECSSCGGGG--------------------------------------------------CT
T ss_pred             CCCCCCEEECCCCCCCccccccchhhcc--------------------------------------------------CC
Confidence            99999999999999876321   23333                                                  45


Q ss_pred             ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797          730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS  809 (927)
Q Consensus       730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  809 (927)
                      +|+.|++++|++++.+|..|.++++|++|+|++|++++.+|..+.++++| +||+++|++++..|..+..+++|++|+++
T Consensus       477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  555 (606)
T 3t6q_A          477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR  555 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred             CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence            56999999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             CCcCcccCCCCCcCCCC
Q 047797          810 YNSLSGKIPLGTQLQSF  826 (927)
Q Consensus       810 ~N~l~~~~p~~~~~~~~  826 (927)
                      +|++.|.|+..+...|+
T Consensus       556 ~N~~~c~c~~~~~~~w~  572 (606)
T 3t6q_A          556 QNPLDCTCSNIYFLEWY  572 (606)
T ss_dssp             TCCEECSGGGHHHHHHH
T ss_pred             CCCccccCCcHHHHHHH
Confidence            99999999865544444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.2e-53  Score=506.55  Aligned_cols=535  Identities=22%  Similarity=0.175  Sum_probs=313.3

Q ss_pred             CEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEE
Q 047797          217 KTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL  296 (927)
Q Consensus       217 ~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  296 (927)
                      ++++.+++.++.++..      ..+++++|++++|.+++ ..+..+.++. +|++|++++|.+++..|..|+++++|++|
T Consensus        14 ~~~~c~~~~l~~ip~~------~~~~l~~L~Ls~n~l~~-~~~~~~~~l~-~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L   85 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDD------IPSSTKNIDLSFNPLKI-LKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNL   85 (606)
T ss_dssp             TEEECTTSCCSSCCTT------SCTTCCEEECTTSCCCE-ECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CceEccCCCcccCCCC------CCCCcCEEECCCCCcCE-eChhhccCCc-cCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence            3455555555544431      11445555555555532 2222333333 55555555555554444455555555555


Q ss_pred             EccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcc-cCCC-CCCCCCCCEEE
Q 047797          297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITG-PIPD-LGRFLSLKVLK  374 (927)
Q Consensus       297 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~-~~~~-l~~l~~L~~L~  374 (927)
                      ++++|++++..|..|+++++|++|++++|.+++..+..+++++      +|++|++++|.+.+ .+|. ++++++|++|+
T Consensus        86 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~  159 (606)
T 3vq2_A           86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI------TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD  159 (606)
T ss_dssp             ECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT------TCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred             ECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC------CCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence            5555555544455555555555555555555444434444444      55555555555443 2233 44555555555


Q ss_pred             ccCCcCCCcchhhhhccCCCC----EEecCCcccccccChhhhhcCCCCCEEEccCCccee-cccCCcccccccceeecc
Q 047797          375 LGENHLNGTINKSLSHLFKLE----TLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTL-KLSHDWVPAFQLKWLSLA  449 (927)
Q Consensus       375 Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~  449 (927)
                      +++|.+++..+..++.+++|+    +|++++|.+++ ++...+... +|++|++++|.+.+ ..+..+..+..++.+++.
T Consensus       160 Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~  237 (606)
T 3vq2_A          160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI  237 (606)
T ss_dssp             CCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             ccCCcceecChhhhhhhhccccccceeeccCCCcce-eCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccc
Confidence            555555544444444433332    45555555442 222222222 45555555554431 222223333344433332


Q ss_pred             cccCCC------CCChhhhcCc--cccEEEc-cCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEe
Q 047797          450 SCKMGP------HFPNWLQTQN--QLISLDI-SNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVID  520 (927)
Q Consensus       450 ~~~~~~------~~~~~l~~~~--~L~~L~L-s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~  520 (927)
                      .+.+..      ..+..+..+.  .++.+++ ..+.+.+.+|.  +...++|+.|++++|.+.. +| .+..+++++.++
T Consensus       238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~  313 (606)
T 3vq2_A          238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLS  313 (606)
T ss_dssp             EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEE
T ss_pred             ccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEE
Confidence            222111      1111111111  2334444 44555555554  3334566777777666643 33 445556667777


Q ss_pred             ccCCccCCCCCCC-CCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCcccccc--CCCcccccCcccEEEcccccccc
Q 047797          521 ISSNNFDGPIPPL-PSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGK--IPDSMGFLHNIQTLSLRNNRLNG  596 (927)
Q Consensus       521 l~~n~~~~~~~~~-~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~  596 (927)
                      +++|.+ +.+|.. +++|++|++++|+..+ +  .+..+++|++|++++|.+++.  .|..+..+++|++|++++|.+++
T Consensus       314 l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  390 (606)
T 3vq2_A          314 IIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII  390 (606)
T ss_dssp             EESCCC-SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE
T ss_pred             cccccC-cccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc
Confidence            777766 444432 5566677777764443 3  345666777777777776654  25566666777777777777664


Q ss_pred             cCCccccCCCCCCEEecCCCcCCCCCC-hhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc-ccchh
Q 047797          597 ELPSSLKNCSKLRVLDLRKNALFGEVP-TCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG-KIPKC  674 (927)
Q Consensus       597 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~  674 (927)
                       +|..+..+++|++|++++|++.+..| ..+. .+++|++|++++|.+.+..|..+.++++|++|++++|++++ .+|..
T Consensus       391 -~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  468 (606)
T 3vq2_A          391 -MSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV  468 (606)
T ss_dssp             -ECCCCTTCTTCCEEECTTSEEESTTTTTTTT-TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred             -chhhccCCCCCCeeECCCCccCCccChhhhh-ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh
Confidence             44666667777777777777765555 2333 56777777777777776666667777777777777777665 24554


Q ss_pred             hccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccC
Q 047797          675 FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG  754 (927)
Q Consensus       675 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~  754 (927)
                      +.+                                                  +++|+.|++++|++++.+|..|.++++
T Consensus       469 ~~~--------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~  498 (606)
T 3vq2_A          469 FAN--------------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHR  498 (606)
T ss_dssp             CTT--------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hcc--------------------------------------------------CCCCCEEECCCCcCCccChhhhccccc
Confidence            544                                                  445599999999999999999999999


Q ss_pred             CCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCC-CCCeEeCcCCcCcccCCCCCcCCCCc
Q 047797          755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLS-GLSVLDLSYNSLSGKIPLGTQLQSFN  827 (927)
Q Consensus       755 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~  827 (927)
                      |++|+|++|++++.+|..++++++|++|||++|+++ .+|..+..++ +|++|++++|++.|.||..+...++.
T Consensus       499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~  571 (606)
T 3vq2_A          499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK  571 (606)
T ss_dssp             CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred             CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence            999999999999999999999999999999999999 6777788887 59999999999999999765555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8e-52  Score=493.16  Aligned_cols=509  Identities=20%  Similarity=0.194  Sum_probs=373.2

Q ss_pred             CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797          268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL  347 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L  347 (927)
                      .+++|++++|.+++..|..|+++++|++|++++|++.+..|.+|.++++|++|++++|.+++..|..+++++      +|
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L  107 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK------AL  107 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT------TC
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc------cc
Confidence            556666666666655555666666666666666666665566666666666666666666655555555555      66


Q ss_pred             cEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCC--EEEc
Q 047797          348 EGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQ--MLFL  424 (927)
Q Consensus       348 ~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~--~L~L  424 (927)
                      ++|++++|.+++..+. ++.+++|++|++++|.+++.....+..+++|++|++++|.+++..+ ..+..+++|+  .|++
T Consensus       108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-EDMSSLQQATNLSLNL  186 (606)
T ss_dssp             CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH-HHHHTTTTCCSEEEEC
T ss_pred             cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh-hhhhhhcccceeEEec
Confidence            6666666666655444 6666666666666666665433334446666666666666653333 3466666666  6666


Q ss_pred             cCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCC----Cc-cchHHhhc-cccceeecc
Q 047797          425 ADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISD----TI-PDWFWDLS-IELFFLNLS  498 (927)
Q Consensus       425 ~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~----~~-~~~~~~~~-~~L~~L~Ls  498 (927)
                      ++|.+.+..+..+.. .+|+.|++++|.   ..+..+..+.+++...+.-..+.+    .+ +..+.... .+++.|+++
T Consensus       187 ~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~  262 (606)
T 3t6q_A          187 NGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ  262 (606)
T ss_dssp             TTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred             CCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence            666666655554433 456666666664   334445555444433333222211    11 12221111 268888888


Q ss_pred             cccccCCCCCccccCCCCcEEeccCCccCCCCCCC---CCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccC
Q 047797          499 NNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL---PSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKI  574 (927)
Q Consensus       499 ~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~  574 (927)
                      +|.+++..+..+..+++++++++++|+++. +|..   +++|++|++++|++++ .|..+..+++|++|++++|.+.+.+
T Consensus       263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  341 (606)
T 3t6q_A          263 KHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL  341 (606)
T ss_dssp             TCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred             cCccCccCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence            888888877777888889999999988874 4432   5789999999999999 4678899999999999999998666


Q ss_pred             CC-cccccCcccEEEcccccccccC--CccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCcc-
Q 047797          575 PD-SMGFLHNIQTLSLRNNRLNGEL--PSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQ-  650 (927)
Q Consensus       575 ~~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-  650 (927)
                      |. .+..+++|++|++++|++++..  +..+..+++|++|++++|++.+..|..+. .+++|++|++++|++.+..+.. 
T Consensus       342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~  420 (606)
T 3t6q_A          342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSP  420 (606)
T ss_dssp             CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCT
T ss_pred             chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchh
Confidence            65 4889999999999999998776  77899999999999999999777777776 7999999999999998876654 


Q ss_pred             ccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccc
Q 047797          651 LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGF  730 (927)
Q Consensus       651 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  730 (927)
                      +..+++|++|++++|.+++..|..+..++.|                                                 
T Consensus       421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------------------------  451 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-------------------------------------------------  451 (606)
T ss_dssp             TTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-------------------------------------------------
T ss_pred             hhCcccCCEEECCCCccCCcCHHHHhCCCCC-------------------------------------------------
Confidence            8899999999999999998888777765544                                                 


Q ss_pred             eeEEEccCCccccc---CccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEe
Q 047797          731 VKYLDLSSNKLCEA---IPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLD  807 (927)
Q Consensus       731 L~~LdLs~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  807 (927)
                       +.|++++|++++.   .+..+.++++|++|++++|++++.+|..|+.+++|++|||++|++++..|..+..++.| +|+
T Consensus       452 -~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~  529 (606)
T 3t6q_A          452 -QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN  529 (606)
T ss_dssp             -CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred             -CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence             9999999999873   33678999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CcCCcCcccCCCC-CcCCCCcccccCCCCCCCCC
Q 047797          808 LSYNSLSGKIPLG-TQLQSFNASVYAGNLELCGL  840 (927)
Q Consensus       808 ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~  840 (927)
                      +++|++++..|.. ..+..+....+.||+..|+.
T Consensus       530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             CcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            9999999876643 23445566667788777753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.3e-53  Score=504.08  Aligned_cols=80  Identities=21%  Similarity=0.244  Sum_probs=67.6

Q ss_pred             CCHHHHHHHHHhhhcCcCCC--------CCcCCCCCCCCCCCCccc---cceeecCCCCCEEEEECCCCchhhhhccccc
Q 047797           35 CIDEEREALLTFKQSLVDEY--------GVLSSWGSEDGKRDCCKW---RGVRCSNTTGHVKVLNLQTSDHEFARRKFLK  103 (927)
Q Consensus        35 ~~~~~~~~ll~~k~~~~~~~--------~~~~~W~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~  103 (927)
                      ....|+.||.++|+++.++.        ...++|.   .+.+||.|   .||+|+. .|||++|+|++        +.+.
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~--------~~l~   94 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEG--------FGAS   94 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTT--------SCCE
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecC--------cccC
Confidence            34569999999999986443        2345798   47899999   9999975 48999999999        8899


Q ss_pred             cccCccccCCCCCCeeeCCCCCC
Q 047797          104 GKISPALLKLRGLRHLDLSKNDF  126 (927)
Q Consensus       104 g~~~~~l~~l~~L~~L~Ls~n~~  126 (927)
                      |.+|++++++++|++|||++|.+
T Consensus        95 g~lp~~l~~L~~L~~L~Ls~N~~  117 (636)
T 4eco_A           95 GRVPDAIGQLTELEVLALGSHGE  117 (636)
T ss_dssp             EEECGGGGGCTTCCEEESCCGGG
T ss_pred             CcCChHHhcCccceEEECcCCcc
Confidence            99999999999999999999976

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-50  Score=499.05  Aligned_cols=522  Identities=23%  Similarity=0.234  Sum_probs=375.3

Q ss_pred             EEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcC-cccccCCCCCcEEeCC
Q 047797          245 TLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNMCSLNQLYLP  323 (927)
Q Consensus       245 ~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~  323 (927)
                      ..+.++++++  .+|.    .++++++|+|++|.+++..|..|.++++|++|++++|...+.+ |.+|.++++|++|+|+
T Consensus         8 ~~dcs~~~L~--~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            8 IAFYRFCNLT--QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEESCCCSS--CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             EEEccCCCCC--CCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            3444555553  3343    2335666666666666555566666666666666666443333 5556666666666666


Q ss_pred             CCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC---CCCCCCCCEEEccCCcCCCcch-hhhhccCCCCEEec
Q 047797          324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD---LGRFLSLKVLKLGENHLNGTIN-KSLSHLFKLETLSL  399 (927)
Q Consensus       324 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L  399 (927)
                      +|.+++..|..|..++      +|++|++++|.+++..+.   ++++++|++|++++|.+++..+ ..|+++++|++|++
T Consensus        82 ~N~l~~~~p~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLF------HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             TCCCCEECTTSSCSCS------SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred             CCcCcccCHhHccCCc------ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence            6666665566666555      666666666666653332   5666666666666666665443 35666666666666


Q ss_pred             CCcccccccChhhhhcC--CCCCEEEccCCcceecccCCcccccc------cceeecccccCCCCCChhhhcC---cccc
Q 047797          400 DGNSFTGVISETFFSNM--SNLQMLFLADNSLTLKLSHDWVPAFQ------LKWLSLASCKMGPHFPNWLQTQ---NQLI  468 (927)
Q Consensus       400 ~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~L~~~~~~~~~~~~l~~~---~~L~  468 (927)
                      ++|.+++..+. .+..+  ++|+.|++++|.+.+..+..+..+.+      |+.|++++|.+.+..+..+...   .+++
T Consensus       156 s~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~  234 (844)
T 3j0a_A          156 SSNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF  234 (844)
T ss_dssp             ESSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred             CCCcCCeeCHH-HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence            66666654444 34444  56666666666666655555444433      6777777776666666555432   4566


Q ss_pred             EEEccCC---------ccCCCccchHHhh-ccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCC---CC
Q 047797          469 SLDISNI---------GISDTIPDWFWDL-SIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL---PS  535 (927)
Q Consensus       469 ~L~Ls~n---------~l~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---~~  535 (927)
                      .++++.+         .+.+..+..+... .++|+.|++++|.+.+..+..+..+++++.+++++|++.+..|..   ++
T Consensus       235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  314 (844)
T 3j0a_A          235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD  314 (844)
T ss_dssp             EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS
T ss_pred             ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC
Confidence            6666532         2222223333322 257899999999998888888888899999999999988776653   67


Q ss_pred             CCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797          536 NSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR  614 (927)
Q Consensus       536 ~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  614 (927)
                      +|++|++++|++++ .|..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.     ..+++|+.|+++
T Consensus       315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~  389 (844)
T 3j0a_A          315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLS  389 (844)
T ss_dssp             SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEE
T ss_pred             CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccC
Confidence            89999999999998 577899999999999999999988888899999999999999999843     237899999999


Q ss_pred             CCcCCCCCChhhhhcCccCcEEEccCcccceec-CccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797          615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI-PFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL  693 (927)
Q Consensus       615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  693 (927)
                      +|++. .+|..    ..+++.|++++|++++.. +..+..+++|++|++++|++++..+...                  
T Consensus       390 ~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------------  446 (844)
T 3j0a_A          390 GNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT------------------  446 (844)
T ss_dssp             SCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS------------------
T ss_pred             CCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc------------------
Confidence            99995 66653    568999999999998643 2345689999999999999986543211                  


Q ss_pred             ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCccc-----ccCccccccccCCCEEeccccccccc
Q 047797          694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLC-----EAIPEEITDLVGLTALNLSRNNLTGL  768 (927)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~  768 (927)
                                                     ...+++|+.|+|++|.++     +..+..|.++++|++|+|++|++++.
T Consensus       447 -------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  495 (844)
T 3j0a_A          447 -------------------------------PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL  495 (844)
T ss_dssp             -------------------------------SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred             -------------------------------cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc
Confidence                                           012345699999999997     45567789999999999999999999


Q ss_pred             CCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCCC
Q 047797          769 IPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPL  842 (927)
Q Consensus       769 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~  842 (927)
                      +|..|.++++|+.|||++|++++..|..+.  ++|++||+++|++++..|.  .+..+....+.||+..|+++.
T Consensus       496 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSC
T ss_pred             ChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCccccccc
Confidence            999999999999999999999988877776  8999999999999999885  356677777899999997654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.5e-50  Score=482.10  Aligned_cols=529  Identities=19%  Similarity=0.170  Sum_probs=450.8

Q ss_pred             cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797          241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL  320 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  320 (927)
                      ..-++++.+++.++  .+|..+.   +++++|++++|.+++..+..|.++++|++|++++|++++..|.+|.++++|++|
T Consensus        11 ~~~~~~~c~~~~l~--~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L   85 (606)
T 3vq2_A           11 VPNITYQCMDQKLS--KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL   85 (606)
T ss_dssp             ETTTEEECTTSCCS--SCCTTSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCceEccCCCcc--cCCCCCC---CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence            34568999999985  5676543   599999999999998888899999999999999999999889999999999999


Q ss_pred             eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCC-cchhhhhccCCCCEEe
Q 047797          321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNG-TINKSLSHLFKLETLS  398 (927)
Q Consensus       321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~  398 (927)
                      ++++|.+++..|..|++++      +|++|++++|.+++..+. ++++++|++|++++|.+++ .+|..++++++|++|+
T Consensus        86 ~Ls~n~l~~~~p~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~  159 (606)
T 3vq2_A           86 ILTGNPIQSFSPGSFSGLT------SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD  159 (606)
T ss_dssp             ECTTCCCCCCCTTSSTTCT------TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred             ECCCCcccccChhhcCCcc------cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence            9999999999899999988      999999999999988866 9999999999999999986 5689999999999999


Q ss_pred             cCCcccccccChhhhhcCCCC----CEEEccCCcceecccCCcccccccceeecccccCC-CCCChhhhcCccccEEEcc
Q 047797          399 LDGNSFTGVISETFFSNMSNL----QMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG-PHFPNWLQTQNQLISLDIS  473 (927)
Q Consensus       399 L~~n~l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~~~~L~~L~Ls  473 (927)
                      +++|++++..+. .++.+++|    ++|++++|.++...+..+... +|++|++++|.+. ...|.++.+++.++.+++.
T Consensus       160 Ls~n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~  237 (606)
T 3vq2_A          160 LSYNYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI  237 (606)
T ss_dssp             CCSSCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             ccCCcceecChh-hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccc
Confidence            999999876554 46665555    489999999998887777665 8999999999886 4677889999999999887


Q ss_pred             CCccCCC-----ccchHHhhc--cccceeec-ccccccCCCCCccccCCCCcEEeccCCccCCCCCCC--CCCCceEeCc
Q 047797          474 NIGISDT-----IPDWFWDLS--IELFFLNL-SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL--PSNSTFLNLS  543 (927)
Q Consensus       474 ~n~l~~~-----~~~~~~~~~--~~L~~L~L-s~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~--~~~L~~L~L~  543 (927)
                      .+.+.+.     ++.......  ..++.+++ ..|.+.+.+|. +..+++++.+++++|.+... |..  +.+|++|+++
T Consensus       238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~~l~~~~~L~~L~l~  315 (606)
T 3vq2_A          238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-EDVPKHFKWQSLSII  315 (606)
T ss_dssp             EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-CCCCTTCCCSEEEEE
T ss_pred             ccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-hhccccccCCEEEcc
Confidence            5544321     111111111  14666777 67788888887 78889999999999998653 333  5689999999


Q ss_pred             CCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccccc--CCccccCCCCCCEEecCCCcCCCC
Q 047797          544 KNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE--LPSSLKNCSKLRVLDLRKNALFGE  621 (927)
Q Consensus       544 ~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~  621 (927)
                      +|++..+| .+ .+++|++|++++|...+..  .+..+++|++|++++|++++.  .|..+..+++|++|++++|.+. .
T Consensus       316 ~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~  390 (606)
T 3vq2_A          316 RCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-I  390 (606)
T ss_dssp             SCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-E
T ss_pred             cccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-c
Confidence            99997799 45 9999999999999766544  577899999999999999876  4888999999999999999985 4


Q ss_pred             CChhhhhcCccCcEEEccCcccceecC-ccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccc
Q 047797          622 VPTCVGGSLQNLIILRLKSNNFHGNIP-FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVV  700 (927)
Q Consensus       622 ~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  700 (927)
                      +|..+. .+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+.+++.|                   
T Consensus       391 ~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------  450 (606)
T 3vq2_A          391 MSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-------------------  450 (606)
T ss_dssp             ECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-------------------
T ss_pred             chhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-------------------
Confidence            666665 79999999999999998877 688999999999999999998888877765555                   


Q ss_pred             cccceeeeecceeEEeeecccccccccccceeEEEccCCcccc-cCccccccccCCCEEecccccccccCCccccCCCCC
Q 047797          701 PGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCE-AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL  779 (927)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  779 (927)
                                                     +.|++++|++++ .+|..++++++|++|+|++|++++.+|..++++++|
T Consensus       451 -------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          451 -------------------------------NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             -------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             -------------------------------CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence                                           999999999998 578899999999999999999999999999999999


Q ss_pred             CeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC-CcCC-CCcccccCCCCCCCCCC
Q 047797          780 DFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG-TQLQ-SFNASVYAGNLELCGLP  841 (927)
Q Consensus       780 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~~~~~~~~~n~~lc~~~  841 (927)
                      ++|++++|++++.+|..+..+++|++|++++|+++ .+|.. ..+. ++....+.+|+..|+.+
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99999999999999999999999999999999998 56754 1222 35556688898888654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.7e-50  Score=481.25  Aligned_cols=537  Identities=18%  Similarity=0.208  Sum_probs=290.6

Q ss_pred             cCCCCHHHHHHHHHhhhcCcCCCCCcCCCCCCC--CCCCC--ccc------------cceeecCCCCCEEEEECCCCchh
Q 047797           32 ITRCIDEEREALLTFKQSLVDEYGVLSSWGSED--GKRDC--CKW------------RGVRCSNTTGHVKVLNLQTSDHE   95 (927)
Q Consensus        32 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~   95 (927)
                      .+.+..+|+.||++||+++.+|     +|+..+  ...+|  |.|            .||+|+. .+||++|+|++    
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----  332 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----  332 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----
Confidence            3446678999999999999876     797411  01344  999            9999975 68999999999    


Q ss_pred             hhhccccccccCccccCCCCCCeeeC-CCCCCCCCCCCccccCC-CCCCE--------------EEC-CCCCCCCCCCcc
Q 047797           96 FARRKFLKGKISPALLKLRGLRHLDL-SKNDFGGSPVPEFIGSL-SKLRY--------------LNL-SCGTPSSKIPHP  158 (927)
Q Consensus        96 ~~~~~~l~g~~~~~l~~l~~L~~L~L-s~n~~~~~~lp~~l~~l-~~L~~--------------L~L-s~n~~~~~~p~~  158 (927)
                          +.+.|.+|++++++++|++||| ++|.+++. .|...... ..+..              ++. ....+.+.++..
T Consensus       333 ----~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~  407 (876)
T 4ecn_A          333 ----FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA  407 (876)
T ss_dssp             ----TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred             ----CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence                8899999999999999999999 88877664 22111111 00000              000 000000000000


Q ss_pred             CCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECC--CccCCCCCchHHhhcCCCCCCEEEcCCCCCCCC-CCchhh
Q 047797          159 FRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLS--CINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPI-NPSFIW  235 (927)
Q Consensus       159 l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~  235 (927)
                      +...+...  .+           . ......++.+.+.  .|.+++   +|..++++++|++|+|++|.+++. .+. . 
T Consensus       408 l~~~~~~~--~i-----------~-~~~~l~l~~l~l~~~~N~L~~---IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~-~-  468 (876)
T 4ecn_A          408 INRNPEMK--PI-----------K-KDSRISLKDTQIGNLTNRITF---ISKAIQRLTKLQIIYFANSPFTYDNIAV-D-  468 (876)
T ss_dssp             HHTCTTSC--CC-----------C-CCCCCCCCTTTTTCCSCEEEE---ECGGGGGCTTCCEEEEESCCCCGGGBSS-S-
T ss_pred             hhhCcccc--cc-----------c-cccccchhhceeccccCcccc---hhHHHhcCCCCCEEECcCCcCCCCcccc-c-
Confidence            00000000  00           0 0011112222222  244443   344566666666666666665551 000 0 


Q ss_pred             ccccccCccEEEcCCCCCCCCCcchhHh--hcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCc-CCC-cCcccc
Q 047797          236 LFNLSTSIETLDLSDNHLPSSSVYPWLF--NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNE-LEG-GIPKFF  311 (927)
Q Consensus       236 l~~~~~~L~~L~Ls~n~l~~~~~~~~l~--~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~  311 (927)
                      ..         ..+.|.+.+ .+|+.+.  ++. +|++|++++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+
T Consensus       469 ~~---------~~s~n~~~g-~iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i  537 (876)
T 4ecn_A          469 WE---------DANSDYAKQ-YENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW  537 (876)
T ss_dssp             CS---------CTTSHHHHH-HTTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred             cc---------ccccccccc-cCChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHH
Confidence            00         000011111 2333332  333 44444444444444444444444444444444444 443 334333


Q ss_pred             cCCC-------CCcEEeCCCCCCCCchhH--HHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCC
Q 047797          312 GNMC-------SLNQLYLPRNKLSGQLSE--LIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG  382 (927)
Q Consensus       312 ~~l~-------~L~~L~L~~n~l~~~~~~--~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~  382 (927)
                      +.++       +|++|++++|.++ .+|.  .++.++      +|+.|++++|.++ .+|.++.+++|+.|++++|.++ 
T Consensus       538 ~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~------~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-  608 (876)
T 4ecn_A          538 TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV------KLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-  608 (876)
T ss_dssp             HHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT------TCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-
T ss_pred             HhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC------CCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-
Confidence            3222       4444444444444 3333  444444      4444444444444 3334444555555555555555 


Q ss_pred             cchhhhhccCC-CCEEecCCcccccccChhhhhcCC--CCCEEEccCCcceecccCCcccccccceeecccccCCCCCCh
Q 047797          383 TINKSLSHLFK-LETLSLDGNSFTGVISETFFSNMS--NLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPN  459 (927)
Q Consensus       383 ~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  459 (927)
                      .+|..+..+++ |++|++++|+++ .+|. .+..++  +|+.|++++|++.+                        .+|.
T Consensus       609 ~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~-~~~~~~~~~L~~L~Ls~N~l~g------------------------~ip~  662 (876)
T 4ecn_A          609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPN-IFNAKSVYVMGSVDFSYNKIGS------------------------EGRN  662 (876)
T ss_dssp             CCCTTSCEECTTCCEEECCSSCCC-SCCS-CCCTTCSSCEEEEECCSSCTTT------------------------TSSS
T ss_pred             cchHHHhhccccCCEEECcCCCCC-cCch-hhhccccCCCCEEECcCCcCCC------------------------cccc
Confidence            44444555554 555555555554 3332 222222  24444444444443                        3222


Q ss_pred             h---hh--cCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCC
Q 047797          460 W---LQ--TQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLP  534 (927)
Q Consensus       460 ~---l~--~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  534 (927)
                      .   +.  ..++|+.|++++|.++ .+|..++..+++|+.|++++|+++ .+|........             .....+
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-------------~~l~nl  727 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD-------------GNYKNT  727 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT-------------SCCTTG
T ss_pred             chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc-------------cccccc
Confidence            1   11  2346677777777766 456555555556677777766665 33322110000             000012


Q ss_pred             CCCceEeCcCCCCCCCCcccc--cCCCCCEEEccCccccccCCCcccccCcccEEEccc------ccccccCCccccCCC
Q 047797          535 SNSTFLNLSKNKFSGLPDCWL--NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN------NRLNGELPSSLKNCS  606 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~lp~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~------N~l~~~~~~~~~~l~  606 (927)
                      ++|+.|++++|+++.+|..+.  .+++|+.|+|++|.+++ +|..+..+++|+.|+|++      |++.+.+|..+.+++
T Consensus       728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~  806 (876)
T 4ecn_A          728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP  806 (876)
T ss_dssp             GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred             CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence            367888888888888888776  88888888888888886 677888888888888876      667777777777777


Q ss_pred             CCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797          607 KLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS  668 (927)
Q Consensus       607 ~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  668 (927)
                      +|+.|+|++|++ +.+|..+.   ++|+.|+|++|++....+..++....+..+.|.+|+..
T Consensus       807 ~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          807 SLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             SCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            777777777777 67776643   57777777777777666666655555666666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-49  Score=463.98  Aligned_cols=513  Identities=20%  Similarity=0.207  Sum_probs=415.5

Q ss_pred             cEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCC
Q 047797          244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP  323 (927)
Q Consensus       244 ~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  323 (927)
                      ..++.++..++  .+|..+   ++++++|++++|.+++..+.+|.++++|++|++++|++++..+..|.++++|++|+++
T Consensus        10 ~~~~c~~~~l~--~ip~~l---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~   84 (570)
T 2z63_A           10 ITYQCMELNFY--KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT   84 (570)
T ss_dssp             TEEECCSSCCS--SCCSSS---CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cEEEeCCCCcc--ccCCCc---cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence            44555655553  455432   3478888888888887777788888888888888888888777888888888888888


Q ss_pred             CCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCC-cchhhhhccCCCCEEecCC
Q 047797          324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNG-TINKSLSHLFKLETLSLDG  401 (927)
Q Consensus       324 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~  401 (927)
                      +|.+++..+..|.+++      +|++|++++|.+++..+. ++.+++|++|++++|.+++ .+|..++++++|++|++++
T Consensus        85 ~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~  158 (570)
T 2z63_A           85 GNPIQSLALGAFSGLS------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  158 (570)
T ss_dssp             TCCCCEECTTTTTTCT------TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred             CCcCCccCHhhhcCcc------ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence            8888887777888877      888999998888877665 8899999999999999887 4688899999999999999


Q ss_pred             cccccccChhhhhcCCCC----CEEEccCCcceecccCCcccccccceeecccccCCC-CCChhhhcCccccEEEccCCc
Q 047797          402 NSFTGVISETFFSNMSNL----QMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGP-HFPNWLQTQNQLISLDISNIG  476 (927)
Q Consensus       402 n~l~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~L~~L~Ls~n~  476 (927)
                      |++++..+. .+..+++|    +.+++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++.+.+....
T Consensus       159 n~l~~~~~~-~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  236 (570)
T 2z63_A          159 NKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  236 (570)
T ss_dssp             SCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred             CccceecHH-HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence            998855443 57777777    889999999988887777665 79999998875432 345667777777766654332


Q ss_pred             cCC-----CccchHHhhc--cccceeecccc-cccCCCCCccccCCCCcEEeccCCccCCCCCCC---CCCCceEeCcCC
Q 047797          477 ISD-----TIPDWFWDLS--IELFFLNLSNN-HISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL---PSNSTFLNLSKN  545 (927)
Q Consensus       477 l~~-----~~~~~~~~~~--~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---~~~L~~L~L~~n  545 (927)
                      +..     .++.......  ..++.++++++ .+.+..+..+..+++++.+++++|.+.+ +|..   . +|++|++++|
T Consensus       237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n  314 (570)
T 2z63_A          237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNC  314 (570)
T ss_dssp             CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESC
T ss_pred             ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccC
Confidence            211     1111111111  14667777777 7778888888888999999999998875 4432   4 8999999999


Q ss_pred             CCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccC--CccccCCCCCCEEecCCCcCCCCCC
Q 047797          546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGEL--PSSLKNCSKLRVLDLRKNALFGEVP  623 (927)
Q Consensus       546 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p  623 (927)
                      .+..+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|++++..  |..+..+++|++|++++|++.+ +|
T Consensus       315 ~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~  389 (570)
T 2z63_A          315 KFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS  389 (570)
T ss_dssp             BCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EE
T ss_pred             cccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cc
Confidence            9998886  4788999999999998877665  67899999999999998654  7788899999999999999855 44


Q ss_pred             hhhhhcCccCcEEEccCcccceecC-ccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccc
Q 047797          624 TCVGGSLQNLIILRLKSNNFHGNIP-FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPG  702 (927)
Q Consensus       624 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  702 (927)
                      ..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+.+++.|                     
T Consensus       390 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------  447 (570)
T 2z63_A          390 SNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---------------------  447 (570)
T ss_dssp             EEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------
T ss_pred             cccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC---------------------
Confidence            4454 79999999999999988766 568899999999999999998888777665544                     


Q ss_pred             cceeeeecceeEEeeecccccccccccceeEEEccCCccc-ccCccccccccCCCEEecccccccccCCccccCCCCCCe
Q 047797          703 YIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLC-EAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDF  781 (927)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  781 (927)
                                                   +.|++++|+++ +.+|..+..+++|++|+|++|++++..|..+..+++|++
T Consensus       448 -----------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          448 -----------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             -----------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             -----------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence                                         99999999998 678999999999999999999999999999999999999


Q ss_pred             EeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcC-CCCc
Q 047797          782 LDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQL-QSFN  827 (927)
Q Consensus       782 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~-~~~~  827 (927)
                      |++++|++++..|..+..+++|++|++++|+++|.||....+ .|+.
T Consensus       499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~  545 (570)
T 2z63_A          499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  545 (570)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHH
Confidence            999999999998889999999999999999999999986555 4443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.8e-47  Score=448.40  Aligned_cols=492  Identities=20%  Similarity=0.205  Sum_probs=373.0

Q ss_pred             cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797          241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL  320 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  320 (927)
                      +.....|.+++.++  .+|+.++   ++|++|++++|++++..|..|+++++|++|++++|++++..|.+|.++++|++|
T Consensus         5 ~~~~~c~~~~~~l~--~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            5 DASGVCDGRSRSFT--SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             CTTSEEECTTSCCS--SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCceEECCCCccc--cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence            33444677777774  5666543   489999999999998888899999999999999999998888999999999999


Q ss_pred             eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCccc-CCC-CCCCCCCCEEEccCCcCCCcch-hhhhccCCCCEE
Q 047797          321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGP-IPD-LGRFLSLKVLKLGENHLNGTIN-KSLSHLFKLETL  397 (927)
Q Consensus       321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L  397 (927)
                      ++++|.+++..+..++.++      +|++|++++|.+++. .|. ++++++|++|++++|.+.+.+| ..+.++++|++|
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  153 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLS------SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL  153 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCT------TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             ECCCCccCccCHHHhccCC------CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence            9999999999888899888      999999999998863 344 8899999999999998544444 578888999999


Q ss_pred             ecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCC--C-hhhhcCccccEEEccC
Q 047797          398 SLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHF--P-NWLQTQNQLISLDISN  474 (927)
Q Consensus       398 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~-~~l~~~~~L~~L~Ls~  474 (927)
                      ++++|++++.+|. .+..+++|++|++++|.+.......+..+++|++|++++|.+.+..  + .....+++|+.|++++
T Consensus       154 ~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~  232 (549)
T 2z81_A          154 EIKALSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG  232 (549)
T ss_dssp             EEEETTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred             eccCCcccccChh-hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence            9999988877666 5788888888888888775443333344667777777777766532  1 1223456777777777


Q ss_pred             CccCCCccchHHh---hccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC--
Q 047797          475 IGISDTIPDWFWD---LSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG--  549 (927)
Q Consensus       475 n~l~~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~--  549 (927)
                      |.+.+..+..+..   ..++|+.+++++|.+.+...-.               ......+....+++.|++.++.+..  
T Consensus       233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~---------------~~~~~~~~~l~~L~~L~l~~~~i~~~~  297 (549)
T 2z81_A          233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN---------------PSESDVVSELGKVETVTIRRLHIPQFY  297 (549)
T ss_dssp             CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC---------------CCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred             cccchhHHHHHHHHhhhhcccccccccccccccccccc---------------ccchhhhhhhcccccccccccccchhh
Confidence            7766554444332   2235566666666554321100               0000112235567777777776554  


Q ss_pred             ----CCcccccCCCCCEEEccCccccccCCCcc-cccCcccEEEcccccccccCCc---cccCCCCCCEEecCCCcCCCC
Q 047797          550 ----LPDCWLNFNSLSILNLANNRFSGKIPDSM-GFLHNIQTLSLRNNRLNGELPS---SLKNCSKLRVLDLRKNALFGE  621 (927)
Q Consensus       550 ----lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~  621 (927)
                          ++..+...++|++|++++|.+. .+|..+ ..+++|++|++++|++++.+|.   .+..+++|++|++++|++++.
T Consensus       298 ~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  376 (549)
T 2z81_A          298 LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM  376 (549)
T ss_dssp             GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred             hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc
Confidence                2223345678999999999987 566655 5789999999999999876643   367889999999999998543


Q ss_pred             CC--hhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccc
Q 047797          622 VP--TCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV  699 (927)
Q Consensus       622 ~p--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  699 (927)
                      .+  ..+. .+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+                        
T Consensus       377 ~~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~------------------------  429 (549)
T 2z81_A          377 QKTGEILL-TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI------------------------  429 (549)
T ss_dssp             HHHHHHGG-GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS------------------------
T ss_pred             ccchhhhh-cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh------------------------
Confidence            22  2343 7899999999999998 678888899999999999999873 33222                        


Q ss_pred             ccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCC
Q 047797          700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL  779 (927)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  779 (927)
                                                  .+.|+.||+++|++++.+    .++++|++|+|++|+++ .+|. ...+++|
T Consensus       430 ----------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L  475 (549)
T 2z81_A          430 ----------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVL  475 (549)
T ss_dssp             ----------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred             ----------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccC
Confidence                                        124599999999998854    57899999999999999 5665 5779999


Q ss_pred             CeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCC
Q 047797          780 DFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT  821 (927)
Q Consensus       780 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~  821 (927)
                      ++|||++|++++.+|..+..+++|++|++++|++.|.||...
T Consensus       476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  517 (549)
T 2z81_A          476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  517 (549)
T ss_dssp             CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHH
T ss_pred             CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHH
Confidence            999999999999999999999999999999999999999533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-46  Score=443.33  Aligned_cols=495  Identities=21%  Similarity=0.208  Sum_probs=321.5

Q ss_pred             CCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhccc
Q 047797          188 SSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSR  267 (927)
Q Consensus       188 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~  267 (927)
                      +++++|++++|.+++..  +..+.++++|++|++++|.+++..+  ..+.++ ++|++|++++|.+++ ..|..+..+. 
T Consensus        28 ~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~i~~i~~--~~~~~l-~~L~~L~L~~n~l~~-~~~~~~~~l~-  100 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIED--GAYQSL-SHLSTLILTGNPIQS-LALGAFSGLS-  100 (570)
T ss_dssp             SSCCEEECCSCCCCEEC--TTTTTTCSSCCEEECTTCCCCEECT--TTTTTC-TTCCEEECTTCCCCE-ECTTTTTTCT-
T ss_pred             ccccEEEccCCccCccC--hhHhhCCCCceEEECCCCcCCccCc--ccccCc-hhCCEEeCcCCcCCc-cCHhhhcCcc-
Confidence            35666666666665532  2345666666666666666666554  334444 666666666666643 2223334444 


Q ss_pred             CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCC-cCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCC
Q 047797          268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEG-GIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS  346 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~  346 (927)
                      +|++|++++|++++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..++.+.      +
T Consensus       101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~  174 (570)
T 2z63_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH------Q  174 (570)
T ss_dssp             TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH------T
T ss_pred             ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh------c
Confidence            66666666666665444456666666666666666654 2456666666666666666666655555555555      4


Q ss_pred             c----cEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCC-cchhhhhccCCCCEEecCCcccccccChhhhhcCCCCC
Q 047797          347 L----EGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNG-TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQ  420 (927)
Q Consensus       347 L----~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  420 (927)
                      |    +.|++++|.+.+..+. +... +|++|++++|.... ..+..+..+++++.+.+....+..         ..+  
T Consensus       175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~---------~~~--  242 (570)
T 2z63_A          175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---------EGN--  242 (570)
T ss_dssp             CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---------CSS--
T ss_pred             cchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC---------chh--
Confidence            4    5555666655555554 3322 55555555553321 233344444444444433221110         000  


Q ss_pred             EEEccCCcceecccCCccccc--ccceeecccc-cCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeec
Q 047797          421 MLFLADNSLTLKLSHDWVPAF--QLKWLSLASC-KMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNL  497 (927)
Q Consensus       421 ~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~~-~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L  497 (927)
                              +.......+..+.  .++.+++.++ .+.+..+..+..+++|++|++++|.+. .+|..+            
T Consensus       243 --------l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~------------  301 (570)
T 2z63_A          243 --------LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS------------  301 (570)
T ss_dssp             --------CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCC------------
T ss_pred             --------hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhh------------
Confidence                    1111111121111  2344444444 344445555555555555555555554 233333            


Q ss_pred             ccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccC--
Q 047797          498 SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKI--  574 (927)
Q Consensus       498 s~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~--  574 (927)
                                   ... +++.+++++|.+.......+++|+.|++++|.+.+ .+.  ..+++|++|++++|.+++..  
T Consensus       302 -------------~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~  365 (570)
T 2z63_A          302 -------------YNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCC  365 (570)
T ss_dssp             -------------SCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEE
T ss_pred             -------------ccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccc
Confidence                         223 44444444444442222235667777777777776 333  67889999999999988654  


Q ss_pred             CCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCC
Q 047797          575 PDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHL  654 (927)
Q Consensus       575 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l  654 (927)
                      +..+..+++|++|++++|.+.+..+. +..+++|++|++++|++.+..|......+++|++|++++|.+.+..|..+.++
T Consensus       366 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  444 (570)
T 2z63_A          366 SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL  444 (570)
T ss_dssp             EHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             cccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence            66788899999999999999866554 88999999999999999776664333479999999999999999999999999


Q ss_pred             CCCCEEEccccccc-cccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeE
Q 047797          655 AFIQVLDLSLNNIS-GKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKY  733 (927)
Q Consensus       655 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~  733 (927)
                      ++|++|++++|+++ +.+|..+..++.                                                  |+.
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~--------------------------------------------------L~~  474 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIFTELRN--------------------------------------------------LTF  474 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTT--------------------------------------------------CCE
T ss_pred             CcCcEEECcCCcCccccchhhhhcccC--------------------------------------------------CCE
Confidence            99999999999997 567766665544                                                  499


Q ss_pred             EEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCc
Q 047797          734 LDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPS  795 (927)
Q Consensus       734 LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  795 (927)
                      |++++|++++.+|..|.++++|++|++++|++++.+|..+.++++|+.|++++|++++..|.
T Consensus       475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            99999999999999999999999999999999999888999999999999999999987764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.4e-45  Score=440.51  Aligned_cols=283  Identities=23%  Similarity=0.195  Sum_probs=236.4

Q ss_pred             cccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCcc
Q 047797          490 IELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNR  569 (927)
Q Consensus       490 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~  569 (927)
                      .+++.+.+.++.+....+  +.....++.+++.+|.+.+..+.....++.+++..|.+...+. ...+++|+.|++++|.
T Consensus       306 ~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~  382 (635)
T 4g8a_A          306 TNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNG  382 (635)
T ss_dssp             TTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSC
T ss_pred             cccccccccccccccccc--cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc-cccccccccchhhccc
Confidence            466777777766654332  2345678888888888887777778889999999998877543 4578999999999998


Q ss_pred             ccc--cCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceec
Q 047797          570 FSG--KIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI  647 (927)
Q Consensus       570 l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~  647 (927)
                      +..  ..+..+..+.+|+++++..|.+.. .+..+..+++|+.+++++|......+...+..+++++.++++.|.+.+..
T Consensus       383 l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~  461 (635)
T 4g8a_A          383 LSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  461 (635)
T ss_dssp             CBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             cccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence            863  455667778899999999998874 45568889999999999998877776665557999999999999999999


Q ss_pred             CccccCCCCCCEEEcccccccc-ccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccc
Q 047797          648 PFQLCHLAFIQVLDLSLNNISG-KIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKS  726 (927)
Q Consensus       648 ~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  726 (927)
                      +..+..+++|+.|++++|++.+ ..|..|..++                                               
T Consensus       462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~-----------------------------------------------  494 (635)
T 4g8a_A          462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-----------------------------------------------  494 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----------------------------------------------
T ss_pred             ccccccchhhhhhhhhhcccccccCchhhhhcc-----------------------------------------------
Confidence            9999999999999999998543 4555555544                                               


Q ss_pred             cccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCC-CCCCe
Q 047797          727 TLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLL-SGLSV  805 (927)
Q Consensus       727 ~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~  805 (927)
                         +|++|||++|++++.+|..|.++++|++|+|++|+|++.+|..|.++++|++|||++|+|++..|..+..+ ++|++
T Consensus       495 ---~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~  571 (635)
T 4g8a_A          495 ---NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF  571 (635)
T ss_dssp             ---TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred             ---ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence               45999999999999999999999999999999999999999999999999999999999999999999998 68999


Q ss_pred             EeCcCCcCcccCCCCCcCCCC
Q 047797          806 LDLSYNSLSGKIPLGTQLQSF  826 (927)
Q Consensus       806 L~ls~N~l~~~~p~~~~~~~~  826 (927)
                      |++++|+|.|.|...++.+|+
T Consensus       572 L~L~~Np~~C~C~~~~~~~wl  592 (635)
T 4g8a_A          572 LNLTQNDFACTCEHQSFLQWI  592 (635)
T ss_dssp             EECTTCCBCCSGGGHHHHHHH
T ss_pred             EEeeCCCCcccCCcHHHHHHH
Confidence            999999999999865544444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6e-45  Score=428.56  Aligned_cols=490  Identities=19%  Similarity=0.198  Sum_probs=341.4

Q ss_pred             CccccceeecCCCCCEEEEECCCCchhhhhccccccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCC
Q 047797           69 CCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSC  148 (927)
Q Consensus        69 ~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~  148 (927)
                      .|.|.|+ |+..          +        ..++ ++|+.+.  ++|++|||++|.+++. .|..++++++|++|++++
T Consensus         3 ~C~~~~~-c~~~----------~--------~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~   59 (549)
T 2z81_A            3 SCDASGV-CDGR----------S--------RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKS   59 (549)
T ss_dssp             EECTTSE-EECT----------T--------SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTT
T ss_pred             cCCCCce-EECC----------C--------Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCC
Confidence            4999998 8532          2        2233 4555443  7899999999998875 677889999999999999


Q ss_pred             CCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCC
Q 047797          149 GTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPP  228 (927)
Q Consensus       149 n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~  228 (927)
                      |.+.+..|..|+++++|++|++++|.+                         ++.  .+..++++++|++|++++|.+++
T Consensus        60 n~i~~~~~~~~~~l~~L~~L~Ls~n~l-------------------------~~~--~~~~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           60 SRINTIEGDAFYSLGSLEHLDLSDNHL-------------------------SSL--SSSWFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCC-------------------------CSC--CHHHHTTCTTCCEEECTTCCCSS
T ss_pred             CCcCccChhhccccccCCEEECCCCcc-------------------------Ccc--CHHHhccCCCCcEEECCCCcccc
Confidence            988887777777777777777755544                         221  12334445555555555544443


Q ss_pred             CCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcc-hhhhcCCCCCEEEccCCcCCCcC
Q 047797          229 INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIP-EAFQHMVSLRLLSLASNELEGGI  307 (927)
Q Consensus       229 ~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~  307 (927)
                      .                           ..|..+..+. +|++|++++|.+.+.+| ..|+++++|++|++++|++++..
T Consensus       113 ~---------------------------~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  164 (549)
T 2z81_A          113 L---------------------------GVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ  164 (549)
T ss_dssp             S---------------------------CSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred             c---------------------------chhhhhhccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence            2                           2222233333 55566666555333333 46777777777777777777777


Q ss_pred             cccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccC----CCCCCCCCCCEEEccCCcCCCc
Q 047797          308 PKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPI----PDLGRFLSLKVLKLGENHLNGT  383 (927)
Q Consensus       308 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~----~~l~~l~~L~~L~Ls~n~l~~~  383 (927)
                      |..+..+++|++|++++|.+.......+..++      +|++|++++|.+++..    +....+++|+.|++++|.+++.
T Consensus       165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  238 (549)
T 2z81_A          165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILS------SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE  238 (549)
T ss_dssp             TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT------TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred             hhhhhccccCceEecccCcccccchhhHhhcc------cccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence            77777788888888887777644443445566      8888888888887642    2245678899999999988765


Q ss_pred             chhh----hhccCCCCEEecCCcccccccC-----hhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCC
Q 047797          384 INKS----LSHLFKLETLSLDGNSFTGVIS-----ETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG  454 (927)
Q Consensus       384 ~~~~----l~~l~~L~~L~L~~n~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~  454 (927)
                      .+..    +..+++|+.+++++|.+.+...     ...+..+++|+.|++.++.+.....                   .
T Consensus       239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-------------------~  299 (549)
T 2z81_A          239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-------------------F  299 (549)
T ss_dssp             HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG-------------------S
T ss_pred             HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh-------------------c
Confidence            4443    4567788888888888765311     0123456677777777665442210                   0


Q ss_pred             CCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCC---CccccCCCCcEEeccCCccCCCC-
Q 047797          455 PHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP---DLSVLKSDDIVIDISSNNFDGPI-  530 (927)
Q Consensus       455 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~~~~l~~l~l~~n~~~~~~-  530 (927)
                      ...+..+...++|++|++++|.+. .+|..++..+++|++|++++|++++.+|   ..+..+++|++|++++|++++.. 
T Consensus       300 ~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  378 (549)
T 2z81_A          300 YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK  378 (549)
T ss_dssp             CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred             ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence            112233344556666666666664 4555555455567777777776665543   22445667777777777776532 


Q ss_pred             ----CCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCC
Q 047797          531 ----PPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCS  606 (927)
Q Consensus       531 ----~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  606 (927)
                          ...+++|++|++++|+++.+|..+..+++|++|++++|.+++ +|..+  .++|++|++++|++++..    ..++
T Consensus       379 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~  451 (549)
T 2z81_A          379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLP  451 (549)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCT
T ss_pred             chhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCC
Confidence                234678999999999999999999999999999999999984 44433  268999999999998753    5789


Q ss_pred             CCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccc
Q 047797          607 KLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP  672 (927)
Q Consensus       607 ~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  672 (927)
                      +|++|++++|+++ .+|.. . .+++|++|++++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus       452 ~L~~L~Ls~N~l~-~ip~~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          452 RLQELYISRNKLK-TLPDA-S-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TCCEEECCSSCCS-SCCCG-G-GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             hhcEEECCCCccC-cCCCc-c-cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999999995 78874 3 69999999999999999989899999999999999999998776

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-45  Score=430.57  Aligned_cols=458  Identities=21%  Similarity=0.183  Sum_probs=313.4

Q ss_pred             cEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCC
Q 047797          244 ETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP  323 (927)
Q Consensus       244 ~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  323 (927)
                      +++|+++|.++  .+|..++   ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+++
T Consensus         3 ~~l~ls~n~l~--~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLI--HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCS--SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCcc--ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence            46777777775  4555443   367777777777776666677777777777777777776666667777777777777


Q ss_pred             CCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCC-cchhhhhccCCCCEEecCCc
Q 047797          324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG-TINKSLSHLFKLETLSLDGN  402 (927)
Q Consensus       324 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n  402 (927)
                      +|++++ +|..                               .+++|++|++++|.+++ .+|..++++++|++|++++|
T Consensus        78 ~N~l~~-lp~~-------------------------------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           78 HNKLVK-ISCH-------------------------------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             SSCCCE-EECC-------------------------------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred             CCceee-cCcc-------------------------------ccCCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence            666652 2211                               34455666666666554 34555666666666666666


Q ss_pred             ccccccChhhhhcCCCC--CEEEccCCcc--eecccCCccccc-ccceeecccccCCCCCC-hhhhcCccccEEEccCCc
Q 047797          403 SFTGVISETFFSNMSNL--QMLFLADNSL--TLKLSHDWVPAF-QLKWLSLASCKMGPHFP-NWLQTQNQLISLDISNIG  476 (927)
Q Consensus       403 ~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~Ls~n~  476 (927)
                      ++++    ..+..+++|  ++|++++|.+  .+..+..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|.
T Consensus       126 ~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  201 (520)
T 2z7x_B          126 HLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL  201 (520)
T ss_dssp             SCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred             ccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence            6543    124455555  6666666655  444443333322 22234455555443333 245566777777777765


Q ss_pred             -------cCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCC-CCCCCceEeCcCCCCC
Q 047797          477 -------ISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP-LPSNSTFLNLSKNKFS  548 (927)
Q Consensus       477 -------l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~~L~~L~L~~n~l~  548 (927)
                             +.+.+| .+. ..++|+.|++++|.+++..+...                   .+. ...+|++|++++|+++
T Consensus       202 ~~~~~~~~~~~~~-~l~-~l~~L~~L~l~~~~l~~~~~~~~-------------------~~~~~~~~L~~L~l~~n~l~  260 (520)
T 2z7x_B          202 EDNKCSYFLSILA-KLQ-TNPKLSNLTLNNIETTWNSFIRI-------------------LQLVWHTTVWYFSISNVKLQ  260 (520)
T ss_dssp             STTTTHHHHHHHH-GGG-GCTTCCEEEEEEEEEEHHHHHHH-------------------HHHHHTSSCSEEEEEEEEEE
T ss_pred             cccccceeecchh-hhc-cccchhhccccccccCHHHHHHH-------------------HHHhhhCcccEEEeeccccc
Confidence                   333333 221 22355555555554443211100                   000 0235677777777777


Q ss_pred             C-CCccc-----ccCCCCCEEEccCccccccCC-Cccccc---CcccEEEcccccccccCCccccCCCCCCEEecCCCcC
Q 047797          549 G-LPDCW-----LNFNSLSILNLANNRFSGKIP-DSMGFL---HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL  618 (927)
Q Consensus       549 ~-lp~~~-----~~l~~L~~L~Ls~n~l~~~~~-~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  618 (927)
                      + +|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++
T Consensus       261 ~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l  336 (520)
T 2z7x_B          261 GQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLL  336 (520)
T ss_dssp             SCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCC
T ss_pred             CccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCcc
Confidence            4 77766     7888899999999988  455 444444   67999999999887432  126789999999999999


Q ss_pred             CCCCChhhhhcCccCcEEEccCcccce--ecCccccCCCCCCEEEccccccccccchh-hccccccccccCCCCcccccc
Q 047797          619 FGEVPTCVGGSLQNLIILRLKSNNFHG--NIPFQLCHLAFIQVLDLSLNNISGKIPKC-FSNFSMMIQEKSSNPIIGLAN  695 (927)
Q Consensus       619 ~~~~p~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~  695 (927)
                      ++.+|..+. .+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.. +..                  
T Consensus       337 ~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~------------------  397 (520)
T 2z7x_B          337 TDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW------------------  397 (520)
T ss_dssp             CTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC------------------
T ss_pred             Chhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc------------------
Confidence            888888876 79999999999999987  56678999999999999999999756643 433                  


Q ss_pred             ccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccC
Q 047797          696 EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQ  775 (927)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  775 (927)
                                                      ++.|+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..
T Consensus       398 --------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~  442 (520)
T 2z7x_B          398 --------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK  442 (520)
T ss_dssp             --------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred             --------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence                                            34559999999999998887765  79999999999999 77888889


Q ss_pred             CCCCCeEeCCCCcCcccCCcc-ccCCCCCCeEeCcCCcCcccCCCCCc
Q 047797          776 LKSLDFLDLSRNHFSGNIPSS-LSLLSGLSVLDLSYNSLSGKIPLGTQ  822 (927)
Q Consensus       776 l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~~~  822 (927)
                      +++|++|++++|+++. +|.. +..+++|++|++++|+++|.|+..+.
T Consensus       443 l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          443 LEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             CTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             CCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence            9999999999999995 5554 99999999999999999999886443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.2e-44  Score=431.36  Aligned_cols=446  Identities=20%  Similarity=0.268  Sum_probs=213.5

Q ss_pred             CccEEEccCCcCcCCcchhhhcCCCCCEEEc-cCCcCCCcCcccccCC-CCCc-----EE---------e-CCCCCCCCc
Q 047797          268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSL-ASNELEGGIPKFFGNM-CSLN-----QL---------Y-LPRNKLSGQ  330 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~l-~~L~-----~L---------~-L~~n~l~~~  330 (927)
                      +++.|+|++|.+.|.+|+.++++++|++|+| ++|.+.|..|...... ..+.     .+         . .....+.+.
T Consensus       324 ~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l  403 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL  403 (876)
T ss_dssp             CEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred             CEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHH
Confidence            6888888888888888888888888888888 7777665533211000 0000     00         0 000011111


Q ss_pred             hhHHHhhccCC-----CcCCCccEEEccC--CCCcccCCC-CCCCCCCCEEEccCCcCCC-----------------cch
Q 047797          331 LSELIQNLSSG-----CTVNSLEGLCLYA--NDITGPIPD-LGRFLSLKVLKLGENHLNG-----------------TIN  385 (927)
Q Consensus       331 ~~~~l~~l~~~-----~~~~~L~~L~L~~--n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~-----------------~~~  385 (927)
                      .+..+...+..     .....++.+.+..  |.+++ +|. ++++++|++|+|++|.+++                 .+|
T Consensus       404 ~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence            11111110000     0001222222222  44444 333 5555555555555555554                 244


Q ss_pred             hhhh--ccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCc-cee-cccCCcccc-------cccceeecccccCC
Q 047797          386 KSLS--HLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS-LTL-KLSHDWVPA-------FQLKWLSLASCKMG  454 (927)
Q Consensus       386 ~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~-------~~L~~L~L~~~~~~  454 (927)
                      ..++  ++++|++|+|++|++.+.+|. .+.++++|++|++++|+ +++ ..|..+..+       ++|+.|++++|.+.
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            4444  555555555555555555553 35555555555555554 444 333333332       36666666666666


Q ss_pred             CCCCh--hhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCC
Q 047797          455 PHFPN--WLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP  532 (927)
Q Consensus       455 ~~~~~--~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  532 (927)
                       .+|.  .+.++++|++|++++|.++ .+| .+ ..+++|+.|++++|+++ .+|..+..+                   
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~-~~L~~L~~L~Ls~N~l~-~lp~~l~~l-------------------  617 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF-GTNVKLTDLKLDYNQIE-EIPEDFCAF-------------------  617 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC-CTTSEESEEECCSSCCS-CCCTTSCEE-------------------
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch-hh-cCCCcceEEECcCCccc-cchHHHhhc-------------------
Confidence             6666  7888888888888888776 555 22 22234444444444443 222221111                   


Q ss_pred             CCCC-CceEeCcCCCCCCCCcccccCC--CCCEEEccCccccccCCCcc---c--ccCcccEEEcccccccccCCcc-cc
Q 047797          533 LPSN-STFLNLSKNKFSGLPDCWLNFN--SLSILNLANNRFSGKIPDSM---G--FLHNIQTLSLRNNRLNGELPSS-LK  603 (927)
Q Consensus       533 ~~~~-L~~L~L~~n~l~~lp~~~~~l~--~L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~-~~  603 (927)
                        ++ |+.|++++|+++.+|..+..++  +|+.|++++|.+.+.+|...   .  .+++|+.|++++|+++ .+|.. +.
T Consensus       618 --~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~  694 (876)
T 4ecn_A          618 --TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFA  694 (876)
T ss_dssp             --CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHH
T ss_pred             --cccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHc
Confidence              12 3334444444444443333332  24455555554444333211   1  1224444444444444 22222 22


Q ss_pred             CCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhc--ccccc
Q 047797          604 NCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFS--NFSMM  681 (927)
Q Consensus       604 ~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~l  681 (927)
                      .+++|+.|+|++|++. .+|..++....                 ..+.++++|+.|+|++|+++ .+|..+.  .+   
T Consensus       695 ~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l---  752 (876)
T 4ecn_A          695 TGSPISTIILSNNLMT-SIPENSLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL---  752 (876)
T ss_dssp             TTCCCSEEECCSCCCS-CCCTTSSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC---
T ss_pred             cCCCCCEEECCCCcCC-ccChHHhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccC---
Confidence            4444444444444443 34433321110                 00001124555555555554 3333332  22   


Q ss_pred             ccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecc
Q 047797          682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLS  761 (927)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls  761 (927)
                                                                     ++|+.|+|++|++++ +|..+.++++|+.|+|+
T Consensus       753 -----------------------------------------------~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          753 -----------------------------------------------PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             -----------------------------------------------TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECC
T ss_pred             -----------------------------------------------CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECC
Confidence                                                           222555555555554 44455555555555554


Q ss_pred             c------ccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797          762 R------NNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG  815 (927)
Q Consensus       762 ~------N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  815 (927)
                      +      |++.+.+|..+.++++|+.|+|++|++ +.+|..+.  ++|+.||+++|++..
T Consensus       785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            3      556666666666666666666666666 45666544  466666666666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.1e-45  Score=434.43  Aligned_cols=320  Identities=18%  Similarity=0.254  Sum_probs=217.6

Q ss_pred             cCCCCCEEEccCCcceecccCCcccccccceeeccccc-CCC-CCChhhhcC------ccccEEEccCCccCCCccc--h
Q 047797          415 NMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCK-MGP-HFPNWLQTQ------NQLISLDISNIGISDTIPD--W  484 (927)
Q Consensus       415 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~-~~~-~~~~~l~~~------~~L~~L~Ls~n~l~~~~~~--~  484 (927)
                      ++++|++|++++|.+.+..|..+..+++|++|++++|. +.+ .+|..+..+      ++|++|++++|.++ .+|.  .
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~  325 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS  325 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence            44444444444444444444444444444444444444 443 444444443      56666666666665 4554  3


Q ss_pred             HHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCC-CCEE
Q 047797          485 FWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNS-LSIL  563 (927)
Q Consensus       485 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~-L~~L  563 (927)
                      +.. +++|++|++++|+++|.+| .+..++                     +|++|++++|+++.+|..+..+++ |++|
T Consensus       326 l~~-l~~L~~L~L~~N~l~g~ip-~~~~l~---------------------~L~~L~L~~N~l~~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          326 LQK-MKKLGMLECLYNQLEGKLP-AFGSEI---------------------KLASLNLAYNQITEIPANFCGFTEQVENL  382 (636)
T ss_dssp             HTT-CTTCCEEECCSCCCEEECC-CCEEEE---------------------EESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred             hcc-CCCCCEEeCcCCcCccchh-hhCCCC---------------------CCCEEECCCCccccccHhhhhhcccCcEE
Confidence            332 2355666666665555555 322222                     345555555555566666777777 7777


Q ss_pred             EccCccccccCCCcccccC--cccEEEcccccccccCCcccc-------CCCCCCEEecCCCcCCCCCChhhhhcCccCc
Q 047797          564 NLANNRFSGKIPDSMGFLH--NIQTLSLRNNRLNGELPSSLK-------NCSKLRVLDLRKNALFGEVPTCVGGSLQNLI  634 (927)
Q Consensus       564 ~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~  634 (927)
                      ++++|.++ .+|..+..++  +|++|++++|++++..|..+.       .+++|++|++++|++. .+|..++..+++|+
T Consensus       383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~  460 (636)
T 4eco_A          383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLS  460 (636)
T ss_dssp             ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCS
T ss_pred             EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCC
Confidence            77777777 5666666544  777788888877777777776       6677888888888875 66666654577888


Q ss_pred             EEEccCcccceecCccc-cC-------CCCCCEEEccccccccccchhhc--cccccccccCCCCccccccccccccccc
Q 047797          635 ILRLKSNNFHGNIPFQL-CH-------LAFIQVLDLSLNNISGKIPKCFS--NFSMMIQEKSSNPIIGLANEILVVPGYI  704 (927)
Q Consensus       635 ~L~L~~n~l~~~~~~~l-~~-------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~  704 (927)
                      +|++++|+++ .+|... ..       +++|++|++++|+++ .+|..+.  .+                          
T Consensus       461 ~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l--------------------------  512 (636)
T 4eco_A          461 SINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL--------------------------  512 (636)
T ss_dssp             EEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC--------------------------
T ss_pred             EEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC--------------------------
Confidence            8888888887 444432 22       238889999998888 5665554  43                          


Q ss_pred             eeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEec------ccccccccCCccccCCCC
Q 047797          705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNL------SRNNLTGLIPPKIGQLKS  778 (927)
Q Consensus       705 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~  778 (927)
                                              ++|+.|+|++|++++ +|..+.++++|++|+|      ++|++.+.+|..++++++
T Consensus       513 ------------------------~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~  567 (636)
T 4eco_A          513 ------------------------PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS  567 (636)
T ss_dssp             ------------------------TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred             ------------------------CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence                                    344889999999988 7888888999999998      568899999999999999


Q ss_pred             CCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCccc
Q 047797          779 LDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGK  816 (927)
Q Consensus       779 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  816 (927)
                      |++|||++|++ +.+|..+.  ++|++||+++|++.+.
T Consensus       568 L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          568 LTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            99999999999 68888876  7999999999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.4e-42  Score=412.14  Aligned_cols=524  Identities=19%  Similarity=0.186  Sum_probs=349.4

Q ss_pred             ccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccc
Q 047797          105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERL  184 (927)
Q Consensus       105 ~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l  184 (927)
                      ++|+.+.  +.+++|||++|.|++. .|..|+++++|++|+|++|.+.+..|.+|+++++|++|+|++|.+         
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l---------  112 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---------  112 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---------
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC---------
Confidence            3554432  4678888888888774 456788888888888888887766666666665555555544332         


Q ss_pred             cCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhh
Q 047797          185 SHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFN  264 (927)
Q Consensus       185 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~  264 (927)
                                      +.                          .++  ..+.++ +                       
T Consensus       113 ----------------~~--------------------------l~~--~~f~~L-~-----------------------  124 (635)
T 4g8a_A          113 ----------------QS--------------------------LAL--GAFSGL-S-----------------------  124 (635)
T ss_dssp             ----------------CE--------------------------ECG--GGGTTC-T-----------------------
T ss_pred             ----------------CC--------------------------CCH--HHhcCC-C-----------------------
Confidence                            11                          111  111112 2                       


Q ss_pred             cccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCc-CcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCc
Q 047797          265 LSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGG-IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCT  343 (927)
Q Consensus       265 ~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~  343 (927)
                         +|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+...  
T Consensus       125 ---~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l--  199 (635)
T 4g8a_A          125 ---SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM--  199 (635)
T ss_dssp             ---TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC--
T ss_pred             ---CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh--
Confidence               444444444444444444455566666666666665542 35556666666666666666666655555554410  


Q ss_pred             CCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCC-cchhhhhccCCCCEEecCCcccccc-----cChhhhhcCC
Q 047797          344 VNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNG-TINKSLSHLFKLETLSLDGNSFTGV-----ISETFFSNMS  417 (927)
Q Consensus       344 ~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~~l~  417 (927)
                      ......++++.|.+....+.......++.+++.+|.... ..+..+..+..++...+..+.....     .....+..+.
T Consensus       200 ~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~  279 (635)
T 4g8a_A          200 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC  279 (635)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred             hhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence            002335666666666555554444456677777775543 2334466666666655543322110     1111122233


Q ss_pred             CCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeec
Q 047797          418 NLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNL  497 (927)
Q Consensus       418 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L  497 (927)
                      .+...++..+.....                     ....+..+....+++.+++.++.+....+.   .....++.|++
T Consensus       280 ~l~~~~l~~~~~~~~---------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~L~~L~l  335 (635)
T 4g8a_A          280 NLTIEEFRLAYLDYY---------------------LDGIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLEL  335 (635)
T ss_dssp             GSEEEEEEEECCCSC---------------------EEECTTTTGGGTTCSEEEEESCEEEECGGG---GSCCCCSEEEE
T ss_pred             chhhhhhhhhhhccc---------------------ccchhhhhhhhccccccccccccccccccc---ccchhhhhhhc
Confidence            333333322211100                     011223344556666677666665443321   12246777777


Q ss_pred             ccccccCCCCCccccCCCCcEEeccCCccCCCCCCC-CCCCceEeCcCCCCCC---CCcccccCCCCCEEEccCcccccc
Q 047797          498 SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL-PSNSTFLNLSKNKFSG---LPDCWLNFNSLSILNLANNRFSGK  573 (927)
Q Consensus       498 s~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~-~~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~Ls~n~l~~~  573 (927)
                      .+|.+.+..+.   ....++.+++..|......+.. +++|+.+++++|.+..   .+..+..+.+|++++++.|.+.. 
T Consensus       336 ~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-  411 (635)
T 4g8a_A          336 VNCKFGQFPTL---KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-  411 (635)
T ss_dssp             ESCEESSCCCC---BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-
T ss_pred             ccccccCcCcc---cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-
Confidence            77766544332   3456777777777766544433 6789999999999875   56677788999999999999885 


Q ss_pred             CCCcccccCcccEEEcccccccccCC-ccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccc-ceecCccc
Q 047797          574 IPDSMGFLHNIQTLSLRNNRLNGELP-SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF-HGNIPFQL  651 (927)
Q Consensus       574 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~~~~l  651 (927)
                      .+..+..+++|+.+++++|+.....+ ..|..+++++.+++++|.+.+..|..+. .+++|++|++++|++ .+..|..+
T Consensus       412 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~  490 (635)
T 4g8a_A          412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIF  490 (635)
T ss_dssp             ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhh
Confidence            45668889999999999988775544 5678999999999999999777776665 799999999999985 45678889


Q ss_pred             cCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccce
Q 047797          652 CHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFV  731 (927)
Q Consensus       652 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  731 (927)
                      ..+++|++|+|++|++++..|..|.+++.|                                                  
T Consensus       491 ~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L--------------------------------------------------  520 (635)
T 4g8a_A          491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSL--------------------------------------------------  520 (635)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------------------------------------
T ss_pred             hhccccCEEECCCCccCCcChHHHcCCCCC--------------------------------------------------
Confidence            999999999999999999888888876655                                                  


Q ss_pred             eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCC-CCCCeEeCCCCcCccc
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQL-KSLDFLDLSRNHFSGN  792 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~  792 (927)
                      ++|+|++|+|++.+|..|.++++|++|+|++|+|++.+|..+..+ ++|++|+|++|+++..
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            999999999999999999999999999999999999999999998 6899999999999853

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-43  Score=411.64  Aligned_cols=461  Identities=19%  Similarity=0.203  Sum_probs=350.1

Q ss_pred             CEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEE
Q 047797          217 KTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLL  296 (927)
Q Consensus       217 ~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L  296 (927)
                      ++|++++|.++.++..   +   .++|++|++++|.+++ ..|..+..+. +|++|++++|++++..|..|+++++|++|
T Consensus         3 ~~l~ls~n~l~~ip~~---~---~~~L~~L~Ls~n~i~~-~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKD---L---SQKTTILNISQNYISE-LWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSSCCCS---C---CTTCSEEECCSSCCCC-CCHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred             ceEecCCCCccccccc---c---cccccEEECCCCcccc-cChhhccccc-cccEEecCCCccCCcChHHhhcccCCCEE
Confidence            5899999999987653   2   2899999999999976 4456676776 99999999999998889999999999999


Q ss_pred             EccCCcCCCcCcccccCCCCCcEEeCCCCCCCC-chhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCC--CEE
Q 047797          297 SLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG-QLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSL--KVL  373 (927)
Q Consensus       297 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L--~~L  373 (927)
                      ++++|+++. +|..  .+++|++|++++|.+++ .+|..++.++      +|++|++++|.+++  ..+..+++|  ++|
T Consensus        75 ~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~------~L~~L~L~~n~l~~--~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           75 DLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS------QLKFLGLSTTHLEK--SSVLPIAHLNISKV  143 (520)
T ss_dssp             ECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT------TCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred             ecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCC------cceEEEecCcccch--hhccccccceeeEE
Confidence            999999994 5655  89999999999999987 4678888888      99999999998876  235666677  889


Q ss_pred             EccCCcC--CCcchhhhhccC-CCCEEecCCcccccccChhhhhcCCCCCEEEccCCc-------ceecccCCccccccc
Q 047797          374 KLGENHL--NGTINKSLSHLF-KLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS-------LTLKLSHDWVPAFQL  443 (927)
Q Consensus       374 ~Ls~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~L  443 (927)
                      ++++|.+  .+..|..+..+. +...+++++|++.+.++...+.++++|+.+++++|.       +.+.           
T Consensus       144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----------  212 (520)
T 2z7x_B          144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI-----------  212 (520)
T ss_dssp             EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH-----------
T ss_pred             EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecc-----------
Confidence            9998888  677777766654 233567778887777776667777777777777765       3222           


Q ss_pred             ceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhh--ccccceeecccccccCCCCCccccCCCCcEEec
Q 047797          444 KWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL--SIELFFLNLSNNHISGKLPDLSVLKSDDIVIDI  521 (927)
Q Consensus       444 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l  521 (927)
                                   ++ .+..+++|+.|++++|.+.+..+..+...  .++|++|++++|+++|.+|..+....       
T Consensus       213 -------------~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~-------  271 (520)
T 2z7x_B          213 -------------LA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS-------  271 (520)
T ss_dssp             -------------HH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC-------
T ss_pred             -------------hh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc-------
Confidence                         22 45667777777777777665433333221  24788888888888877776541110       


Q ss_pred             cCCccCCCCCCCCCCCceEeCcCCCCCCCC-cccccC---CCCCEEEccCccccccCCCcccccCcccEEEccccccccc
Q 047797          522 SSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNF---NSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE  597 (927)
Q Consensus       522 ~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  597 (927)
                               ...+.+|+.+++++|.+ .+| ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|++++.
T Consensus       272 ---------~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~  339 (520)
T 2z7x_B          272 ---------GTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDT  339 (520)
T ss_dssp             ---------SCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTT
T ss_pred             ---------cccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChh
Confidence                     01133455666666666 555 344333   57888888888876432  125678888888888888887


Q ss_pred             CCccccCCCCCCEEecCCCcCCC--CCChhhhhcCccCcEEEccCcccceecCcc-ccCCCCCCEEEccccccccccchh
Q 047797          598 LPSSLKNCSKLRVLDLRKNALFG--EVPTCVGGSLQNLIILRLKSNNFHGNIPFQ-LCHLAFIQVLDLSLNNISGKIPKC  674 (927)
Q Consensus       598 ~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~p~~  674 (927)
                      .|..+..+++|++|++++|++.+  .+|..+. .+++|++|++++|++.+.+|.. +..+++|++|++++|++++.+|..
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  418 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC  418 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh
Confidence            88888888888888888888864  4455555 6888999999999988756654 778899999999999998766654


Q ss_pred             hccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccC
Q 047797          675 FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG  754 (927)
Q Consensus       675 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~  754 (927)
                      +.                                                    +.|+.||+++|+++ .+|..+.++++
T Consensus       419 l~----------------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~  445 (520)
T 2z7x_B          419 LP----------------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEA  445 (520)
T ss_dssp             CC----------------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred             hc----------------------------------------------------ccCCEEECCCCccc-ccchhhhcCCC
Confidence            42                                                    23589999999998 67777789999


Q ss_pred             CCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCC
Q 047797          755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIP  794 (927)
Q Consensus       755 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  794 (927)
                      |++|+|++|++++..+..+..+++|++|++++|++++..+
T Consensus       446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            9999999999996444449999999999999999987544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.6e-43  Score=411.87  Aligned_cols=488  Identities=18%  Similarity=0.175  Sum_probs=342.5

Q ss_pred             CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797          268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL  347 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L  347 (927)
                      ..+++++++|++++ +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.+++      +|
T Consensus        32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L  102 (562)
T 3a79_B           32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ------DL  102 (562)
T ss_dssp             -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT------TC
T ss_pred             CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC------CC
Confidence            45889999999985 666554  8999999999999988888999999999999999999988888888888      99


Q ss_pred             cEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCc-chhhhhccCCCCEEecCCcccccccChhhhhcCCCC--CEEEc
Q 047797          348 EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT-INKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNL--QMLFL  424 (927)
Q Consensus       348 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L  424 (927)
                      ++|++++|.++...+.  .+++|++|++++|++++. .|..|+++++|++|++++|++++.    .+..+++|  ++|++
T Consensus       103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L  176 (562)
T 3a79_B          103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILL  176 (562)
T ss_dssp             CEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEE
T ss_pred             CEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEe
Confidence            9999999998854443  788999999999998863 467889999999999999988742    35556666  88888


Q ss_pred             cCCcc--eecccCCccccc-ccceeecccccCCCCCCh-hhhcCccccEEEccCCccCC-CccchH--Hhhccccceeec
Q 047797          425 ADNSL--TLKLSHDWVPAF-QLKWLSLASCKMGPHFPN-WLQTQNQLISLDISNIGISD-TIPDWF--WDLSIELFFLNL  497 (927)
Q Consensus       425 ~~n~l--~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~-~l~~~~~L~~L~Ls~n~l~~-~~~~~~--~~~~~~L~~L~L  497 (927)
                      ++|++  ++..+..+..+. +.-.+++++|.+.+..+. .+..+++|+.+++++|+..- .++..+  ....+.|+.+++
T Consensus       177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L  256 (562)
T 3a79_B          177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL  256 (562)
T ss_dssp             EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred             ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence            88888  665555554432 122456666666554443 34456677777777764210 011100  112235555555


Q ss_pred             ccccccCCCCCccccCCCCcEEeccCCccCCCCCC-CCCCCceEeCcCCCCCC-CCccc-----ccCCCCCEEEccCccc
Q 047797          498 SNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP-LPSNSTFLNLSKNKFSG-LPDCW-----LNFNSLSILNLANNRF  570 (927)
Q Consensus       498 s~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~~L~~L~L~~n~l~~-lp~~~-----~~l~~L~~L~Ls~n~l  570 (927)
                      +++.+.+...                   .+..+. ...+|++|++++|++++ +|..+     .+++.|+.++++.+.+
T Consensus       257 ~~~~l~~~~~-------------------~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~  317 (562)
T 3a79_B          257 QHIETTWKCS-------------------VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF  317 (562)
T ss_dssp             EEEEECHHHH-------------------HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred             cCCcCcHHHH-------------------HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee
Confidence            5544432110                   000000 01255666666666664 55554     4455555555555555


Q ss_pred             cccCC-Ccccc---cCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccce-
Q 047797          571 SGKIP-DSMGF---LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG-  645 (927)
Q Consensus       571 ~~~~~-~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-  645 (927)
                        .+| ..+..   ..+|++|++++|.+....  ....+++|++|++++|++++.+|..+. .+++|++|++++|++++ 
T Consensus       318 --~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~  392 (562)
T 3a79_B          318 --LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNF  392 (562)
T ss_dssp             --SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBT
T ss_pred             --ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCc
Confidence              233 22222   256888888888875332  125778888999999988877787776 68889999999998886 


Q ss_pred             -ecCccccCCCCCCEEEccccccccccchh-hccccccccccCCCCccccccccccccccceeeeecceeEEeeeccccc
Q 047797          646 -NIPFQLCHLAFIQVLDLSLNNISGKIPKC-FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHE  723 (927)
Q Consensus       646 -~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  723 (927)
                       .+|..+..+++|++|++++|++++.+|.. +..                                              
T Consensus       393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~----------------------------------------------  426 (562)
T 3a79_B          393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW----------------------------------------------  426 (562)
T ss_dssp             THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC----------------------------------------------
T ss_pred             ccchhhhcCCCCCCEEECCCCcCCCccChhhhcC----------------------------------------------
Confidence             34567888999999999999998755543 333                                              


Q ss_pred             ccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCcc-ccCCCC
Q 047797          724 YKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSS-LSLLSG  802 (927)
Q Consensus       724 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~  802 (927)
                          ++.|+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++|||++|++++ +|.. +..+++
T Consensus       427 ----l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~  498 (562)
T 3a79_B          427 ----AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTS  498 (562)
T ss_dssp             ----CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTT
T ss_pred             ----cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCC
Confidence                34459999999999988776654  79999999999999 677777799999999999999995 5655 999999


Q ss_pred             CCeEeCcCCcCcccCCCCCcCC-CCcccc-cCCCCCCCCCCCCCCCCC
Q 047797          803 LSVLDLSYNSLSGKIPLGTQLQ-SFNASV-YAGNLELCGLPLPNKCAD  848 (927)
Q Consensus       803 L~~L~ls~N~l~~~~p~~~~~~-~~~~~~-~~~n~~lc~~~~~~~C~~  848 (927)
                      |++|++++|++.|.||....++ +..... ...+..-|++|....|..
T Consensus       499 L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          499 LQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG  546 (562)
T ss_dssp             CCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred             CCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence            9999999999999999654433 221111 111223357777788866

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.7e-40  Score=390.69  Aligned_cols=439  Identities=20%  Similarity=0.218  Sum_probs=255.6

Q ss_pred             CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797          268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL  347 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L  347 (927)
                      +|++|++++|.+++..|..|.++++|++|++++|++++..|.+|.++++|++|++++|+++. +|..  .++      +|
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~------~L  123 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMA------SL  123 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCT------TC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccc------cC
Confidence            44444444444444444444444444444444444444444444444444444444444442 2211  222      44


Q ss_pred             cEEEccCCCCcccC-CC-CCCCCCCCEEEccCCcCCCcchhhhhccCCC--CEEecCCccc--ccccChhhhhcCC-CCC
Q 047797          348 EGLCLYANDITGPI-PD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKL--ETLSLDGNSF--TGVISETFFSNMS-NLQ  420 (927)
Q Consensus       348 ~~L~L~~n~l~~~~-~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~  420 (927)
                      ++|++++|.+++.. |. ++++++|++|++++|.+++.   .+..+++|  ++|++++|.+  ++..|. .+..+. ..-
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l  199 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVL  199 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCC-EEEECCEEEE
T ss_pred             CEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcc-cccccCcceE
Confidence            44444444444322 22 44444444444444444432   22233333  4444444444  333332 122222 011


Q ss_pred             EEEccCCcceeccc-CCcccccccceeecccccCC----CCCChhhhcCccccEEEccCCccCCCccchHHh--hccccc
Q 047797          421 MLFLADNSLTLKLS-HDWVPAFQLKWLSLASCKMG----PHFPNWLQTQNQLISLDISNIGISDTIPDWFWD--LSIELF  493 (927)
Q Consensus       421 ~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~~~~~----~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~--~~~~L~  493 (927)
                      .+++++|.+.+..+ ..+..+.+|+.+++++|...    ......+..+++|+.++++++.+.+.....+..  ...+|+
T Consensus       200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~  279 (562)
T 3a79_B          200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE  279 (562)
T ss_dssp             EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred             EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence            23444444333211 12233445555555554210    011234566778888888877765432222111  113677


Q ss_pred             eeecccccccCCCCCccccC--CCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccc---cCCCCCEEEccC
Q 047797          494 FLNLSNNHISGKLPDLSVLK--SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWL---NFNSLSILNLAN  567 (927)
Q Consensus       494 ~L~Ls~n~l~~~~~~~~~~~--~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~---~l~~L~~L~Ls~  567 (927)
                      +|++++|.++|.+|......  ..                  +..|+.++++.+.+ .+|. .+.   ...+|++|++++
T Consensus       280 ~L~l~~n~l~~~ip~~~~~~~~~~------------------L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~  340 (562)
T 3a79_B          280 YLNIYNLTITERIDREEFTYSETA------------------LKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISD  340 (562)
T ss_dssp             EEEEEEEEECSCCCCCCCCCCSCS------------------CCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEES
T ss_pred             EEEEeccEeeccccchhhhccccc------------------chheehhhccccee-ecChhhhhhhhccCcceEEEccC
Confidence            78887777777766543111  11                  12233334444444 4452 222   235788888888


Q ss_pred             ccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCC--CChhhhhcCccCcEEEccCcccce
Q 047797          568 NRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE--VPTCVGGSLQNLIILRLKSNNFHG  645 (927)
Q Consensus       568 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~~l~~L~~L~L~~n~l~~  645 (927)
                      |.+....  ....+++|++|++++|++++..|..+.++++|++|++++|++.+.  +|..+. .+++|++|++++|++++
T Consensus       341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~  417 (562)
T 3a79_B          341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNS  417 (562)
T ss_dssp             SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBS
T ss_pred             CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCC
Confidence            8875322  125778889999999988888888888889999999999988542  233444 68899999999999987


Q ss_pred             ecCc-cccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccc
Q 047797          646 NIPF-QLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEY  724 (927)
Q Consensus       646 ~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  724 (927)
                      .+|. .+..+++|++|++++|++++.+|..+.                                                
T Consensus       418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~------------------------------------------------  449 (562)
T 3a79_B          418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP------------------------------------------------  449 (562)
T ss_dssp             CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC------------------------------------------------
T ss_pred             ccChhhhcCcccCCEEECCCCCCCcchhhhhc------------------------------------------------
Confidence            5554 478889999999999999876665442                                                


Q ss_pred             cccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCC
Q 047797          725 KSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIP  794 (927)
Q Consensus       725 ~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  794 (927)
                          ++|+.|||++|+++ .+|..+.++++|++|+|++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       450 ----~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          450 ----PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             ----TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             ----CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence                23589999999997 467667799999999999999995444449999999999999999997654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.3e-39  Score=369.22  Aligned_cols=372  Identities=20%  Similarity=0.190  Sum_probs=238.1

Q ss_pred             CccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcc-hhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEE
Q 047797          346 SLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTI-NKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLF  423 (927)
Q Consensus       346 ~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  423 (927)
                      +|++|++++|.+++..|. ++++++|++|++++|.+.+.+ +..|.++++|++|++++|++++..|. .|.++++|++|+
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~  109 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-AFNGLANLEVLT  109 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-TTTTCTTCCEEE
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-hccCcccCCEEe
Confidence            555555555555554444 555555555555555554332 33455555555555555555433333 345555555555


Q ss_pred             ccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeeccccccc
Q 047797          424 LADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS  503 (927)
Q Consensus       424 L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~  503 (927)
                      +++|.+++..+..                      ..+..+++|++|++++|.+.+..|..++..+++|++|++++|+++
T Consensus       110 L~~n~l~~~~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          110 LTQCNLDGAVLSG----------------------NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTSCCBTHHHHS----------------------STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCCCCCCccccCc----------------------ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            5555554322111                      114445555555555555554444443333344444444444444


Q ss_pred             CCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc---------ccccCCCCCEEEccCccccccC
Q 047797          504 GKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD---------CWLNFNSLSILNLANNRFSGKI  574 (927)
Q Consensus       504 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~---------~~~~l~~L~~L~Ls~n~l~~~~  574 (927)
                      +..+..+....                   ..+++.|++++|.+.+++.         .+..+++|++|++++|.+++..
T Consensus       168 ~~~~~~l~~l~-------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  228 (455)
T 3v47_A          168 SICEEDLLNFQ-------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM  228 (455)
T ss_dssp             CCCTTTSGGGT-------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred             ccChhhhhccc-------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence            44333222110                   0123444444444444321         1234466777777777776666


Q ss_pred             CCccccc---CcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhh-hcCccCcEEEccCcccceecCcc
Q 047797          575 PDSMGFL---HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVG-GSLQNLIILRLKSNNFHGNIPFQ  650 (927)
Q Consensus       575 ~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~  650 (927)
                      |..+...   ++|+.|++++|.+.+...              ..+.+.+..+..+. ...++|++|++++|.+.+..|..
T Consensus       229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  294 (455)
T 3v47_A          229 AKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV  294 (455)
T ss_dssp             HHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred             hhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhh
Confidence            6555443   667777777766543211              11122111111111 12478999999999999999999


Q ss_pred             ccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccc
Q 047797          651 LCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGF  730 (927)
Q Consensus       651 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  730 (927)
                      +..+++|++|++++|++++..|..|.+++.|                                                 
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------------------------------------------  325 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHL-------------------------------------------------  325 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------------------------------------------------
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccC-------------------------------------------------
Confidence            9999999999999999998888777765554                                                 


Q ss_pred             eeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcC
Q 047797          731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY  810 (927)
Q Consensus       731 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  810 (927)
                       +.|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|++++
T Consensus       326 -~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  404 (455)
T 3v47_A          326 -LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  404 (455)
T ss_dssp             -CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccC
Confidence             9999999999999999999999999999999999999999999999999999999999987777889999999999999


Q ss_pred             CcCcccCCCCCcC
Q 047797          811 NSLSGKIPLGTQL  823 (927)
Q Consensus       811 N~l~~~~p~~~~~  823 (927)
                      |+++|.||....+
T Consensus       405 N~l~~~~~~~~~l  417 (455)
T 3v47_A          405 NPWDCSCPRIDYL  417 (455)
T ss_dssp             SCBCCCTTTTHHH
T ss_pred             CCcccCCCcchHH
Confidence            9999999964433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.8e-40  Score=372.69  Aligned_cols=400  Identities=24%  Similarity=0.255  Sum_probs=217.3

Q ss_pred             CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797          268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL  347 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L  347 (927)
                      .|++|++++|.+ +.+|++++++++|++|++++|++.+.+|..++++++|+.+++.+|..           .      ++
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~------~l   73 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------R------QA   73 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------H------TC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------c------CC
Confidence            677777777777 57777777777777777777777777777777776665554443310           1      55


Q ss_pred             cEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCC
Q 047797          348 EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN  427 (927)
Q Consensus       348 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  427 (927)
                      ++|++++|.+++... +  .++|++|++++|.+++ +|..   .++|++|++++|++++ ++.    ..++|++|++++|
T Consensus        74 ~~L~l~~~~l~~lp~-~--~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n  141 (454)
T 1jl5_A           74 HELELNNLGLSSLPE-L--PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNN  141 (454)
T ss_dssp             SEEECTTSCCSCCCS-C--CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSS
T ss_pred             CEEEecCCccccCCC-C--cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCC
Confidence            666666666554222 1  2456666666666664 3322   2556666666666553 221    0145555555555


Q ss_pred             cceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCC
Q 047797          428 SLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP  507 (927)
Q Consensus       428 ~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  507 (927)
                      ++++                         +| .+..+++|++|++++|++++ +|...    .+|++|++++|++++ +|
T Consensus       142 ~l~~-------------------------lp-~~~~l~~L~~L~l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~  189 (454)
T 1jl5_A          142 QLEK-------------------------LP-ELQNSSFLKIIDVDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LP  189 (454)
T ss_dssp             CCSS-------------------------CC-CCTTCTTCCEEECCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CC
T ss_pred             CCCC-------------------------Cc-ccCCCCCCCEEECCCCcCcc-cCCCc----ccccEEECcCCcCCc-Cc
Confidence            5543                         22 13334444444444444433 22211    256666666666655 33


Q ss_pred             CccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEE
Q 047797          508 DLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL  587 (927)
Q Consensus       508 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  587 (927)
                       .+..+++++.+++++|++.+ +|..+.+|++|++++|+++.+|. +..+++|++|++++|++++ +|..   +++|++|
T Consensus       190 -~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L  262 (454)
T 1jl5_A          190 -ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEAL  262 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEE
T ss_pred             -cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEE
Confidence             24566667777777777665 45556688888888888888874 7788888888888888875 4442   3788888


Q ss_pred             EcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCC-CCCCEEEccccc
Q 047797          588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHL-AFIQVLDLSLNN  666 (927)
Q Consensus       588 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~Ls~N~  666 (927)
                      ++++|++++ +|..   .++|++|++++|++++ +|.    ..++|++|++++|++++. +    .+ ++|++|++++|+
T Consensus       263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~  328 (454)
T 1jl5_A          263 NVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNK  328 (454)
T ss_dssp             ECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSC
T ss_pred             ECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCc
Confidence            888888885 4443   3778888888888854 221    135788888888888752 2    23 478888888888


Q ss_pred             cccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCc
Q 047797          667 ISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP  746 (927)
Q Consensus       667 l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p  746 (927)
                      +++ +|..+                                                     ++|+.|++++|++++ +|
T Consensus       329 l~~-lp~~~-----------------------------------------------------~~L~~L~L~~N~l~~-lp  353 (454)
T 1jl5_A          329 LIE-LPALP-----------------------------------------------------PRLERLIASFNHLAE-VP  353 (454)
T ss_dssp             CSC-CCCCC-----------------------------------------------------TTCCEEECCSSCCSC-CC
T ss_pred             ccc-ccccC-----------------------------------------------------CcCCEEECCCCcccc-cc
Confidence            875 44321                                                     234788888888875 45


Q ss_pred             cccccccCCCEEecccccccc--cCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc--cCCC
Q 047797          747 EEITDLVGLTALNLSRNNLTG--LIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG--KIPL  819 (927)
Q Consensus       747 ~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~  819 (927)
                      .   .+++|++|++++|++++  .+|.+++.+        +.|.+.+.+|..   +++|++||+++|++++  .+|.
T Consensus       354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          354 E---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             C---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---------------------------------
T ss_pred             c---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence            4   46788888888888887  566655432        345666666653   3678888888888887  6774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-39  Score=368.78  Aligned_cols=430  Identities=23%  Similarity=0.280  Sum_probs=215.5

Q ss_pred             ccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCC
Q 047797          108 PALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHL  187 (927)
Q Consensus       108 ~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l  187 (927)
                      +.-.+.++|++|++++|.+ +. +|..++++++|++|++++|.+.+.+|..++++++|+++++++|..            
T Consensus         5 p~~~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------   70 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------   70 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred             ccccccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence            3444568999999999999 43 999999999999999999999999999999999888777754431            


Q ss_pred             CCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhccc
Q 047797          188 SSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSR  267 (927)
Q Consensus       188 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~  267 (927)
                      .++++|++++|.+++.+.+      .++|++|++++|.+++.+..       .++|++|++++|++++  ++.    .++
T Consensus        71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~lp~~-------~~~L~~L~l~~n~l~~--l~~----~~~  131 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTELPEL-------PQSLKSLLVDNNNLKA--LSD----LPP  131 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCCC-------CTTCCEEECCSSCCSC--CCS----CCT
T ss_pred             cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCccccc-------cCCCcEEECCCCccCc--ccC----CCC
Confidence            4567777777777664332      25677777777777664321       1667777777776653  221    113


Q ss_pred             CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797          268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL  347 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L  347 (927)
                      +|++|++++|++++ +| +|+++++|++|++++|++++ +|..+   ++|++|++++|++++. | .++.++      +|
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l-~-~~~~l~------~L  197 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEEL-P-ELQNLP------FL  197 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSC-C-CCTTCT------TC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcC-c-cccCCC------CC
Confidence            66677777776664 44 46666667777776666664 33322   3566666666666542 2 244444      55


Q ss_pred             cEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCC
Q 047797          348 EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN  427 (927)
Q Consensus       348 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  427 (927)
                      ++|++++|.+++. |..  .++|++|++++|.++ .+| .++.+++|++|++++|++++ +|.    .+++|++|++++|
T Consensus       198 ~~L~l~~N~l~~l-~~~--~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N  267 (454)
T 1jl5_A          198 TAIYADNNSLKKL-PDL--PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDN  267 (454)
T ss_dssp             CEEECCSSCCSSC-CCC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSS
T ss_pred             CEEECCCCcCCcC-CCC--cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCC
Confidence            5555555555542 221  135555555555555 333 25555555555555555543 222    1245555555555


Q ss_pred             cceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCC
Q 047797          428 SLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP  507 (927)
Q Consensus       428 ~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  507 (927)
                      ++++                         +|..   .++|++|++++|.+++. |.    ..++|++|++++|++++. +
T Consensus       268 ~l~~-------------------------l~~~---~~~L~~L~ls~N~l~~l-~~----~~~~L~~L~l~~N~l~~i-~  313 (454)
T 1jl5_A          268 YLTD-------------------------LPEL---PQSLTFLDVSENIFSGL-SE----LPPNLYYLNASSNEIRSL-C  313 (454)
T ss_dssp             CCSC-------------------------CCCC---CTTCCEEECCSSCCSEE-SC----CCTTCCEEECCSSCCSEE-C
T ss_pred             cccc-------------------------cCcc---cCcCCEEECcCCccCcc-cC----cCCcCCEEECcCCcCCcc-c
Confidence            4443                         2221   25666666766666541 11    114677777777777652 1


Q ss_pred             CccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccc--cCCCcccccCccc
Q 047797          508 DLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSG--KIPDSMGFLHNIQ  585 (927)
Q Consensus       508 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~  585 (927)
                      .   ..++++.+++++|++.+ +|..+++|++|++++|+++++|.   .+++|++|++++|++++  .+|..+..     
T Consensus       314 ~---~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-----  381 (454)
T 1jl5_A          314 D---LPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVED-----  381 (454)
T ss_dssp             C---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-----
T ss_pred             C---CcCcCCEEECCCCcccc-ccccCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHh-----
Confidence            1   12467778888887776 56667888888888888888887   46788889998888887  56655442     


Q ss_pred             EEEcccccccccCCccccCCCCCCEEecCCCcCCC--CCChhhhhcCccCcEEEccCcccceecCccccC
Q 047797          586 TLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFG--EVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCH  653 (927)
Q Consensus       586 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  653 (927)
                         ++.|.+.+.+|..   +++|++|++++|++++  .+|.       +++.|.+.+|.+.+.++.+...
T Consensus       382 ---L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~-------sl~~L~~~~~~~~~~~~~~~~~  438 (454)
T 1jl5_A          382 ---LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE-------SVEDLRMNSERVVDPYEFAHET  438 (454)
T ss_dssp             ---EECCC--------------------------------------------------------------
T ss_pred             ---hhhcccccccccc---cCcCCEEECCCCcCCccccchh-------hHhheeCcCcccCCccccCHHH
Confidence               2346666666653   4789999999999976  4553       4667788888888776655443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8.4e-40  Score=353.74  Aligned_cols=294  Identities=26%  Similarity=0.426  Sum_probs=206.9

Q ss_pred             CCCHHHHHHHHHhhhcCcCCCCCcCCCCCCCCCCCCcc--ccceeecCCC--CCEEEEECCCCchhhhhcccccc--ccC
Q 047797           34 RCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCK--WRGVRCSNTT--GHVKVLNLQTSDHEFARRKFLKG--KIS  107 (927)
Q Consensus        34 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~l~g--~~~  107 (927)
                      .|.++|++||++||+++.||. .+++|.   .+++||.  |.||+|+..+  ++|++|+|++        +.+.|  .+|
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~--------~~l~~~~~~~   69 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPIP   69 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------CCCSSCEECC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC--------CCccCCcccC
Confidence            699999999999999998886 789997   4678998  9999997655  8999999999        88998  899


Q ss_pred             ccccCCCCCCeeeCCC-CCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccC
Q 047797          108 PALLKLRGLRHLDLSK-NDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSH  186 (927)
Q Consensus       108 ~~l~~l~~L~~L~Ls~-n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~  186 (927)
                      +.+.++++|++|++++ |.+.+. +|..++++++|++|++++|.+.+.+|..|+++++|++|++++|.+           
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l-----------  137 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-----------  137 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-----------
T ss_pred             hhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-----------
Confidence            9999999999999995 888876 898899999999999999998888887776666666666644332           


Q ss_pred             CCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcc
Q 047797          187 LSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLS  266 (927)
Q Consensus       187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~  266 (927)
                                    +                          +..|  ..+..+ ++|++|++++|++++ .+|..+..+.
T Consensus       138 --------------~--------------------------~~~p--~~~~~l-~~L~~L~L~~N~l~~-~~p~~l~~l~  173 (313)
T 1ogq_A          138 --------------S--------------------------GTLP--PSISSL-PNLVGITFDGNRISG-AIPDSYGSFS  173 (313)
T ss_dssp             --------------E--------------------------SCCC--GGGGGC-TTCCEEECCSSCCEE-ECCGGGGCCC
T ss_pred             --------------C--------------------------CcCC--hHHhcC-CCCCeEECcCCcccC-cCCHHHhhhh
Confidence                          2                          1112  223333 455555555555544 4455555544


Q ss_pred             cCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCC
Q 047797          267 RNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS  346 (927)
Q Consensus       267 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~  346 (927)
                      ++|++|++++|++++.+|..+..++ |++|++++|++++..|..|..+++|++|++++|.+++.                
T Consensus       174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------  236 (313)
T 1ogq_A          174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD----------------  236 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB----------------
T ss_pred             hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee----------------
Confidence            4566666666666666666666655 66666666666655555555555555555555555433                


Q ss_pred             ccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccC
Q 047797          347 LEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD  426 (927)
Q Consensus       347 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  426 (927)
                                    +|.+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.  ...+++|+.+++++
T Consensus       237 --------------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~l~l~~  300 (313)
T 1ogq_A          237 --------------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYAN  300 (313)
T ss_dssp             --------------GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCS
T ss_pred             --------------cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC--CccccccChHHhcC
Confidence                          33344556677777777777766777777777777777777777766665  25666666666666


Q ss_pred             Cc
Q 047797          427 NS  428 (927)
Q Consensus       427 n~  428 (927)
                      |+
T Consensus       301 N~  302 (313)
T 1ogq_A          301 NK  302 (313)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.8e-37  Score=355.77  Aligned_cols=378  Identities=23%  Similarity=0.228  Sum_probs=268.0

Q ss_pred             ccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcC-cccccCCCCCcEEe
Q 047797          243 IETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGI-PKFFGNMCSLNQLY  321 (927)
Q Consensus       243 L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~  321 (927)
                      -+.++.+++.++  .+|.    .+++|++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|+
T Consensus        12 ~~~~~c~~~~l~--~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A           12 GYNAICINRGLH--QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             TTEEECCSSCCS--SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             ccccCcCCCCcc--cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence            345677777764  4444    3347788888888777766777777777777777777776433 45677777777777


Q ss_pred             CCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCC--C-CCCCCCCCEEEccCCcCCCcchhh-hhccCCCCEE
Q 047797          322 LPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIP--D-LGRFLSLKVLKLGENHLNGTINKS-LSHLFKLETL  397 (927)
Q Consensus       322 L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~--~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L  397 (927)
                      +++|++++..|..+++++      +|++|++++|.+++..+  . +..+++|++|++++|.+++..|.. +.++++|++|
T Consensus        86 Ls~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  159 (455)
T 3v47_A           86 LDYNQFLQLETGAFNGLA------NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL  159 (455)
T ss_dssp             CTTCTTCEECTTTTTTCT------TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred             CCCCccCccChhhccCcc------cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence            777776666555555555      55555555555554221  1 445555555555555555444433 4455555555


Q ss_pred             ecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccc--cccceeecccccCCCCCChh--------hhcCccc
Q 047797          398 SLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPA--FQLKWLSLASCKMGPHFPNW--------LQTQNQL  467 (927)
Q Consensus       398 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~--------l~~~~~L  467 (927)
                      ++++|+++                         +..+..+..+  .+++.|++++|.+....+.+        +..+++|
T Consensus       160 ~L~~n~l~-------------------------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L  214 (455)
T 3v47_A          160 DLTFNKVK-------------------------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI  214 (455)
T ss_dssp             ECTTCCBS-------------------------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred             eCCCCccc-------------------------ccChhhhhccccccccccccccCcccccchhhcccccccccccccee
Confidence            55555554                         4444333333  34555555555554433332        2345788


Q ss_pred             cEEEccCCccCCCccchHHhhc--cccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCC-----CCCCCceE
Q 047797          468 ISLDISNIGISDTIPDWFWDLS--IELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPP-----LPSNSTFL  540 (927)
Q Consensus       468 ~~L~Ls~n~l~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-----~~~~L~~L  540 (927)
                      ++|++++|.+.+..|..+....  .+|+.|++++|...+.....              +.+.+..+.     ...+|++|
T Consensus       215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~L~~L  280 (455)
T 3v47_A          215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH--------------TNFKDPDNFTFKGLEASGVKTC  280 (455)
T ss_dssp             EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC--------------CSSCCCCTTTTGGGTTSCCCEE
T ss_pred             eeEecCCCcccccchhhhhccccccceeeEeeccccccccccch--------------hhhccCcccccccccccCceEE
Confidence            8888888888887777776542  57888888888765432211              111111111     13689999


Q ss_pred             eCcCCCCCC-CCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCC
Q 047797          541 NLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF  619 (927)
Q Consensus       541 ~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  619 (927)
                      ++++|++++ .|..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..|.++++|++|++++|+++
T Consensus       281 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  360 (455)
T 3v47_A          281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR  360 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred             EecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence            999999999 7888999999999999999999999999999999999999999999998999999999999999999998


Q ss_pred             CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccc
Q 047797          620 GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP  672 (927)
Q Consensus       620 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  672 (927)
                      +..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus       361 ~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          361 ALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            77787776 79999999999999998777778999999999999999998877

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.1e-35  Score=334.06  Aligned_cols=197  Identities=20%  Similarity=0.181  Sum_probs=132.7

Q ss_pred             cccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCc
Q 047797          102 LKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSL  181 (927)
Q Consensus       102 l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~  181 (927)
                      ..+..+..++++++|++||+++|.+++  +| .++.+++|++|++++|.+.+. |  ++++++|++|++++|.+...+  
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--
T ss_pred             cCcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee--
Confidence            344445678889999999999999987  45 688999999999999998874 4  888899999999888765542  


Q ss_pred             ccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchh
Q 047797          182 ERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPW  261 (927)
Q Consensus       182 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~  261 (927)
                        ++++++|++|++++|++++.+     ++.+++|++|++++|.+++..     +.++ ++|++|++++|...+ .+  .
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~-----l~~l-~~L~~L~l~~n~~~~-~~--~  165 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID-----VSHN-TQLTELDCHLNKKIT-KL--D  165 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC-----CTTC-TTCCEEECTTCSCCC-CC--C
T ss_pred             --cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec-----cccC-CcCCEEECCCCCccc-cc--c
Confidence              777888888888888877631     667777777777777777642     3444 667777777664433 22  1


Q ss_pred             HhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCC
Q 047797          262 LFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG  329 (927)
Q Consensus       262 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  329 (927)
                      +..+. +|++|++++|++++. |  ++.+++|++|++++|++++.   .+..+++|++|++++|++++
T Consensus       166 ~~~l~-~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          166 VTPQT-QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             CTTCT-TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred             cccCC-cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence            23333 566666666665542 2  55555566666666555543   24455555555555555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=341.45  Aligned_cols=239  Identities=17%  Similarity=0.179  Sum_probs=175.4

Q ss_pred             cccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCc
Q 047797          552 DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQ  631 (927)
Q Consensus       552 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~  631 (927)
                      ..+..+++|++|++++|.+.+..+..|.++++|+.|++++|++++..+..|.++++|+.|++++|.+.+..+..+. .++
T Consensus       122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~l~  200 (477)
T 2id5_A          122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK-RLY  200 (477)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC-SCT
T ss_pred             hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc-cCc
Confidence            3445556666666666666666666666677777777777777665555666777777777777776544444443 567


Q ss_pred             cCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecc
Q 047797          632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLD  711 (927)
Q Consensus       632 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (927)
                      +|++|++++|++.+.+|.......+|++|++++|++++..+..+.+++.                               
T Consensus       201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-------------------------------  249 (477)
T 2id5_A          201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY-------------------------------  249 (477)
T ss_dssp             TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT-------------------------------
T ss_pred             ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc-------------------------------
Confidence            7777777777766666666666668888888888887544445555443                               


Q ss_pred             eeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcc
Q 047797          712 NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG  791 (927)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  791 (927)
                                         |+.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++
T Consensus       250 -------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          250 -------------------LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             -------------------CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred             -------------------cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence                               4888888888888888888889999999999999998888899999999999999999998


Q ss_pred             cCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCC
Q 047797          792 NIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLP  841 (927)
Q Consensus       792 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  841 (927)
                      ..+..|..+++|++|++++|++.|.|+..+.+.+.....+.++...|+.|
T Consensus       311 ~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          311 LEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             eCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            77778888899999999999999988765544444444566666667554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.1e-35  Score=332.32  Aligned_cols=366  Identities=21%  Similarity=0.188  Sum_probs=256.0

Q ss_pred             CcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCC
Q 047797          277 NHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND  356 (927)
Q Consensus       277 n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~  356 (927)
                      ....+..+..++++++|++|++++|.+++. | .+..+++|++|++++|++++. |  ++.++      +|++|++++|.
T Consensus        28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~------~L~~L~Ls~N~   96 (457)
T 3bz5_A           28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNT------NLTYLACDSNK   96 (457)
T ss_dssp             TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCT------TCSEEECCSSC
T ss_pred             cCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCC------CCCEEECcCCC
Confidence            344445566788899999999999998865 4 688889999999999988875 2  55555      78888888887


Q ss_pred             CcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCC
Q 047797          357 ITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHD  436 (927)
Q Consensus       357 l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  436 (927)
                      +++. + ++.+++|++|++++|++++. +  ++.+++|++|++++|++++ ++   ++.+++|++|++++|+..+..  .
T Consensus        97 l~~~-~-~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~  165 (457)
T 3bz5_A           97 LTNL-D-VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--D  165 (457)
T ss_dssp             CSCC-C-CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--C
T ss_pred             Ccee-e-cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--c
Confidence            7764 2 77777888888888877764 3  6777777888887777775 32   566777777777777433222  2


Q ss_pred             cccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCC
Q 047797          437 WVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDD  516 (927)
Q Consensus       437 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l  516 (927)
                                              +..+++|++|++++|++++. |   ...+++|+.|++++|++++            
T Consensus       166 ------------------------~~~l~~L~~L~ls~n~l~~l-~---l~~l~~L~~L~l~~N~l~~------------  205 (457)
T 3bz5_A          166 ------------------------VTPQTQLTTLDCSFNKITEL-D---VSQNKLLNRLNCDTNNITK------------  205 (457)
T ss_dssp             ------------------------CTTCTTCCEEECCSSCCCCC-C---CTTCTTCCEEECCSSCCSC------------
T ss_pred             ------------------------cccCCcCCEEECCCCcccee-c---cccCCCCCEEECcCCcCCe------------
Confidence                                    33344455555555544431 1   1112244444444444332            


Q ss_pred             cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccc
Q 047797          517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNG  596 (927)
Q Consensus       517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  596 (927)
                                  .....+++|++|++++|+++++|  +..+++|++|++++|++++..   ++.+++|+.|++++|    
T Consensus       206 ------------~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n----  264 (457)
T 3bz5_A          206 ------------LDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT----  264 (457)
T ss_dssp             ------------CCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC----
T ss_pred             ------------eccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC----
Confidence                        21122456778888888888877  778888999999999888653   455678888887765    


Q ss_pred             cCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhc
Q 047797          597 ELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFS  676 (927)
Q Consensus       597 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  676 (927)
                                +|+.|++++|++.+.+|.  . .+++|+.|++++|...+.+|.   ..++|+.|++++|           
T Consensus       265 ----------~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-----------  317 (457)
T 3bz5_A          265 ----------DLLEIDLTHNTQLIYFQA--E-GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-----------  317 (457)
T ss_dssp             ----------CCSCCCCTTCTTCCEEEC--T-TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-----------
T ss_pred             ----------CCCEEECCCCccCCcccc--c-ccccCCEEECCCCcccceecc---CCCcceEechhhc-----------
Confidence                      456778888888777763  2 578888888888887777664   3445555555554           


Q ss_pred             cccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCC
Q 047797          677 NFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLT  756 (927)
Q Consensus       677 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~  756 (927)
                                                                          +.|+.|++++|++++. +  ++++++|+
T Consensus       318 ----------------------------------------------------~~L~~L~L~~N~l~~l-~--l~~l~~L~  342 (457)
T 3bz5_A          318 ----------------------------------------------------PKLVYLYLNNTELTEL-D--VSHNTKLK  342 (457)
T ss_dssp             ----------------------------------------------------TTCCEEECTTCCCSCC-C--CTTCTTCS
T ss_pred             ----------------------------------------------------ccCCEEECCCCccccc-c--cccCCcCc
Confidence                                                                2348899999999884 3  88899999


Q ss_pred             EEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC
Q 047797          757 ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG  820 (927)
Q Consensus       757 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  820 (927)
                      .|++++|++++.        +.|+.|++++|.++|.     ..+..|..+++++|+++|.+|..
T Consensus       343 ~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          343 SLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             EEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             EEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            999999998863        5677788999999876     24456788899999999999864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.6e-34  Score=328.46  Aligned_cols=214  Identities=28%  Similarity=0.432  Sum_probs=168.5

Q ss_pred             CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797          535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR  614 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  614 (927)
                      ++|++|++++|.+++++ .+..+++|++|++++|.+.+..|  ++.+++|+.|++++|++++.  ..+..+++|++|+++
T Consensus       177 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          177 TTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA  251 (466)
T ss_dssp             TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence            34555666666665553 36677888888888888876554  66778888888888888753  457788888888888


Q ss_pred             CCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccc
Q 047797          615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLA  694 (927)
Q Consensus       615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  694 (927)
                      +|++.+..|  +. .+++|++|++++|.+++..+  +..+++|++|++++|++++..|  +..                 
T Consensus       252 ~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~-----------------  307 (466)
T 1o6v_A          252 NNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN-----------------  307 (466)
T ss_dssp             SSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-----------------
T ss_pred             CCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-----------------
Confidence            888865444  43 68889999999888886544  7788999999999998886443  333                 


Q ss_pred             cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc
Q 047797          695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG  774 (927)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  774 (927)
                                                       +++|+.|++++|++++..|  +..+++|++|++++|++++.  ..+.
T Consensus       308 ---------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~  350 (466)
T 1o6v_A          308 ---------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLA  350 (466)
T ss_dssp             ---------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred             ---------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhc
Confidence                                             3455899999999988776  78899999999999999876  5788


Q ss_pred             CCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCccc
Q 047797          775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGK  816 (927)
Q Consensus       775 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  816 (927)
                      ++++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999999999999998877  88899999999999999873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8e-34  Score=325.54  Aligned_cols=123  Identities=29%  Similarity=0.376  Sum_probs=63.8

Q ss_pred             CceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCC
Q 047797          537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN  616 (927)
Q Consensus       537 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  616 (927)
                      |++|++++|++++++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|++++..+  +..+++|++|++++|
T Consensus       223 L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          223 LDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN  297 (466)
T ss_dssp             CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS
T ss_pred             CCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCC
Confidence            444444444444432 34455566666666666554433  5555566666666665554332  555556666666666


Q ss_pred             cCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc
Q 047797          617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG  669 (927)
Q Consensus       617 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  669 (927)
                      ++.+..+  +. .+++|++|++++|++++..|  +..+++|++|++++|++++
T Consensus       298 ~l~~~~~--~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          298 QLEDISP--IS-NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CCSCCGG--GG-GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             cccCchh--hc-CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence            5543222  22 45555555555555554433  4455555555555555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.2e-34  Score=310.00  Aligned_cols=258  Identities=32%  Similarity=0.534  Sum_probs=241.8

Q ss_pred             CCCceEeCcCCCCCC---CCcccccCCCCCEEEccC-ccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCE
Q 047797          535 SNSTFLNLSKNKFSG---LPDCWLNFNSLSILNLAN-NRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRV  610 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  610 (927)
                      .+++.|++++|++++   +|..+.++++|++|++++ |.+.+.+|..|+.+++|++|++++|++++.+|..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            468889999999985   889999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCC-CCCEEEccccccccccchhhccccccccccCCCC
Q 047797          611 LDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLA-FIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNP  689 (927)
Q Consensus       611 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~  689 (927)
                      |++++|++.+.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ +        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999989999887 799999999999999999999999998 999999999999999998887653 3        


Q ss_pred             ccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccC
Q 047797          690 IIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLI  769 (927)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  769 (927)
                                                                +.|++++|++++.+|..|.++++|+.|+|++|++++.+
T Consensus       200 ------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  237 (313)
T 1ogq_A          200 ------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             ------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             ------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence                                                      89999999999999999999999999999999999877


Q ss_pred             CccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCCCCCCC
Q 047797          770 PPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKC  846 (927)
Q Consensus       770 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~C  846 (927)
                      |. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+|+.+||.|.. .|
T Consensus       238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            66 88899999999999999999999999999999999999999999999888888888899999999998876 57

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=326.05  Aligned_cols=214  Identities=21%  Similarity=0.240  Sum_probs=121.3

Q ss_pred             cccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccC
Q 047797          554 WLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL  633 (927)
Q Consensus       554 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L  633 (927)
                      +..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.+|.... ...+|
T Consensus       148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L  226 (477)
T 2id5_A          148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNL  226 (477)
T ss_dssp             STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCC
T ss_pred             ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccc
Confidence            33444455555555555444334455555555555555555555555555555555555555555555554444 34456


Q ss_pred             cEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeeccee
Q 047797          634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNV  713 (927)
Q Consensus       634 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (927)
                      ++|++++|++++..+..+..+++|+.|+|++|++++..+..|.+++.                                 
T Consensus       227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---------------------------------  273 (477)
T 2id5_A          227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR---------------------------------  273 (477)
T ss_dssp             SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT---------------------------------
T ss_pred             cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc---------------------------------
Confidence            66666666665443345566666666666666666544444443333                                 


Q ss_pred             EEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccC
Q 047797          714 LLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI  793 (927)
Q Consensus       714 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  793 (927)
                                       |+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++....
T Consensus       274 -----------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          274 -----------------LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             -----------------CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             -----------------CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence                             366667777766666667777777777777777777666666677777777777777776432


Q ss_pred             CccccCCCCCCeEeCcCCcCcccCCC
Q 047797          794 PSSLSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       794 p~~l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      +.. .-......+++.++...|..|.
T Consensus       337 ~~~-~~~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          337 RLL-WVFRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             GGH-HHHTTTTSSCCTTCCCBEEESG
T ss_pred             chH-hHHhhhhccccCccCceeCCch
Confidence            211 1112233445566666666664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2e-32  Score=306.68  Aligned_cols=332  Identities=19%  Similarity=0.206  Sum_probs=197.6

Q ss_pred             CCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEE
Q 047797          392 FKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLD  471 (927)
Q Consensus       392 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~  471 (927)
                      ++++.|++++|.++ .+|...+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            44444455444443 33333444455555555555554444444444444444444444444445555555666666666


Q ss_pred             ccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCC-
Q 047797          472 ISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL-  550 (927)
Q Consensus       472 Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~l-  550 (927)
                      +++|.+++ +|...+...++                                             |++|++++|+++++ 
T Consensus       124 L~~n~l~~-l~~~~~~~l~~---------------------------------------------L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A          124 LERNDLSS-LPRGIFHNTPK---------------------------------------------LTTLSMSNNNLERIE  157 (390)
T ss_dssp             CCSSCCCC-CCTTTTTTCTT---------------------------------------------CCEEECCSSCCCBCC
T ss_pred             CCCCccCc-CCHHHhcCCCC---------------------------------------------CcEEECCCCccCccC
Confidence            66665542 22221111223                                             33333334444332 


Q ss_pred             CcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcC
Q 047797          551 PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSL  630 (927)
Q Consensus       551 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l  630 (927)
                      |..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+++.     ...++|++|++++|.+. .+|..   ..
T Consensus       158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~  225 (390)
T 3o6n_A          158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VN  225 (390)
T ss_dssp             TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCC-EEECC---CC
T ss_pred             hhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeee-ecccc---cc
Confidence            23345555666666666665543   234455666666666655532     23345666666666663 23332   24


Q ss_pred             ccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeec
Q 047797          631 QNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYL  710 (927)
Q Consensus       631 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (927)
                      ++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..+..++.|                             
T Consensus       226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-----------------------------  274 (390)
T 3o6n_A          226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-----------------------------  274 (390)
T ss_dssp             SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----------------------------
T ss_pred             ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-----------------------------
Confidence            5677777777776643  456677777777777777776666666554433                             


Q ss_pred             ceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCc
Q 047797          711 DNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS  790 (927)
Q Consensus       711 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  790 (927)
                                           +.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus       275 ---------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          275 ---------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             ---------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             ---------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence                                 777777777766 4555677889999999999988 45677888899999999999998


Q ss_pred             ccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCC
Q 047797          791 GNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGL  840 (927)
Q Consensus       791 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  840 (927)
                      .. |  +..+++|++|++++|++.|.+.. ..+..+....+.+++..|+.
T Consensus       332 ~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          332 TL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred             ee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence            54 3  67788999999999999987654 23445555556666666653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.4e-32  Score=321.58  Aligned_cols=334  Identities=19%  Similarity=0.200  Sum_probs=212.2

Q ss_pred             cCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEE
Q 047797          391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISL  470 (927)
Q Consensus       391 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L  470 (927)
                      +.+++.+++++|.+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..+.++++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            344555555555554 3343345555555555555555555444444455555555555555555555555666666666


Q ss_pred             EccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-
Q 047797          471 DISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-  549 (927)
Q Consensus       471 ~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-  549 (927)
                      ++++|.+++..+..+ ..+                                             ++|++|++++|.+++ 
T Consensus       129 ~L~~n~l~~l~~~~~-~~l---------------------------------------------~~L~~L~Ls~N~l~~~  162 (597)
T 3oja_B          129 VLERNDLSSLPRGIF-HNT---------------------------------------------PKLTTLSMSNNNLERI  162 (597)
T ss_dssp             ECCSSCCCCCCTTTT-TTC---------------------------------------------TTCCEEECCSSCCCBC
T ss_pred             EeeCCCCCCCCHHHh-ccC---------------------------------------------CCCCEEEeeCCcCCCC
Confidence            666665543222111 111                                             233444444444444 


Q ss_pred             CCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhc
Q 047797          550 LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGS  629 (927)
Q Consensus       550 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  629 (927)
                      .|..+..+++|++|++++|.+++.   .+..+++|+.|++++|.+++     +...++|+.|++++|.+. .+|..   .
T Consensus       163 ~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~---~  230 (597)
T 3oja_B          163 EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGP---V  230 (597)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-EEECS---C
T ss_pred             ChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-ccccc---c
Confidence            233455566666666666666543   14445666666666666653     233456777777777663 33322   2


Q ss_pred             CccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeee
Q 047797          630 LQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRY  709 (927)
Q Consensus       630 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  709 (927)
                      .++|+.|++++|.+++  +..+..+++|+.|+|++|.+++..|..|..++.|                            
T Consensus       231 ~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------------------------  280 (597)
T 3oja_B          231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----------------------------  280 (597)
T ss_dssp             CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC----------------------------
T ss_pred             CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC----------------------------
Confidence            3567777777777765  3567777788888888888777777666655444                            


Q ss_pred             cceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcC
Q 047797          710 LDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF  789 (927)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  789 (927)
                                            +.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++
T Consensus       281 ----------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          281 ----------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             ----------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred             ----------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence                                  788888888876 4666677889999999999998 5677888899999999999999


Q ss_pred             cccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCC
Q 047797          790 SGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLP  841 (927)
Q Consensus       790 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  841 (927)
                      ++..   +..+++|++|++++|++.|.++. ..+..+....+.++...|+.+
T Consensus       337 ~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          337 VTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence            8652   66778999999999999998654 345666667788888888763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=2.3e-31  Score=297.92  Aligned_cols=308  Identities=22%  Similarity=0.228  Sum_probs=206.5

Q ss_pred             CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797          268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL  347 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L  347 (927)
                      +++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.++      +|
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L  119 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP------LL  119 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC------CC
Confidence            444455555544433333345555555555555555544444555555555555555555554444444444      55


Q ss_pred             cEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccC
Q 047797          348 EGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD  426 (927)
Q Consensus       348 ~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  426 (927)
                      ++|++++|.++...+. +..+++|++|++++|.+++..+..+..+++|++|++++|++++. +   +..+++|+.|++++
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSY  195 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeeccc
Confidence            5555555555544444 56666777777777777766666677777777777777776643 2   34566666666666


Q ss_pred             CcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCC
Q 047797          427 NSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKL  506 (927)
Q Consensus       427 n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  506 (927)
                      |.++...                             ..++|++|++++|.+.                         .. 
T Consensus       196 n~l~~~~-----------------------------~~~~L~~L~l~~n~l~-------------------------~~-  220 (390)
T 3o6n_A          196 NLLSTLA-----------------------------IPIAVEELDASHNSIN-------------------------VV-  220 (390)
T ss_dssp             SCCSEEE-----------------------------CCSSCSEEECCSSCCC-------------------------EE-
T ss_pred             ccccccC-----------------------------CCCcceEEECCCCeee-------------------------ec-
Confidence            6554311                             1123344444444332                         11 


Q ss_pred             CCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccE
Q 047797          507 PDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT  586 (927)
Q Consensus       507 ~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  586 (927)
                                             ....+.+|+.|++++|++++. ..+..+++|++|++++|.+++..|..|..+++|++
T Consensus       221 -----------------------~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          221 -----------------------RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             -----------------------ECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             -----------------------cccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence                                   011124577777778877776 46788999999999999999988999999999999


Q ss_pred             EEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccc
Q 047797          587 LSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNN  666 (927)
Q Consensus       587 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  666 (927)
                      |++++|++++ +|..+..+++|++|++++|++. .+|..+. .+++|++|++++|+++.. +  +..+++|+.|++++|+
T Consensus       277 L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          277 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             EECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSC
T ss_pred             EECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCC
Confidence            9999999985 4556678999999999999995 6777776 689999999999999854 3  6788999999999999


Q ss_pred             cccc
Q 047797          667 ISGK  670 (927)
Q Consensus       667 l~~~  670 (927)
                      +.+.
T Consensus       351 ~~~~  354 (390)
T 3o6n_A          351 WDCN  354 (390)
T ss_dssp             EEHH
T ss_pred             ccch
Confidence            9864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=6e-30  Score=281.84  Aligned_cols=287  Identities=25%  Similarity=0.372  Sum_probs=174.3

Q ss_pred             ccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCC
Q 047797          110 LLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSS  189 (927)
Q Consensus       110 l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~  189 (927)
                      +..+++|++|+++++.+..  +|. ++.+++|++|++++|.+.+..+  ++++++|++|++++|.+..   ++.+.++++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~---~~~~~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD---ISALQNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---CGGGTTCTT
T ss_pred             chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC---chHHcCCCc
Confidence            3456677777777777665  333 6667777777777776664332  6677777777776665533   345667777


Q ss_pred             CcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCc
Q 047797          190 LRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNI  269 (927)
Q Consensus       190 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L  269 (927)
                      |++|++++|.+...+.    +..+++|++|++++|......+   .+..+ ++|++|++++|.+.+  ++. +..+. +|
T Consensus       112 L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~---~~~~l-~~L~~L~l~~~~~~~--~~~-~~~l~-~L  179 (347)
T 4fmz_A          112 LRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS---PLSNM-TGLNYLTVTESKVKD--VTP-IANLT-DL  179 (347)
T ss_dssp             CSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG---GGTTC-TTCCEEECCSSCCCC--CGG-GGGCT-TC
T ss_pred             CCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc---chhhC-CCCcEEEecCCCcCC--chh-hccCC-CC
Confidence            7777777777665321    6666777777777764444333   24444 667777777766643  222 33444 66


Q ss_pred             cEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccE
Q 047797          270 LHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEG  349 (927)
Q Consensus       270 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~  349 (927)
                      ++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..++      +|++
T Consensus       180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~------~L~~  247 (347)
T 4fmz_A          180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS------QLTW  247 (347)
T ss_dssp             SEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCE
T ss_pred             CEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCC------CCCE
Confidence            677777666664333  6666677777777766665433  5666666677776666665444  44444      6666


Q ss_pred             EEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcc
Q 047797          350 LCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSL  429 (927)
Q Consensus       350 L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  429 (927)
                      |++++|.+++. +.+..+++|++|++++|.+++.  ..+..+++|++|++++|++++..+. .+..+++|++|++++|++
T Consensus       248 L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          248 LEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             EECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCSSSC
T ss_pred             EECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccCCcc
Confidence            66666666543 3356666666666666666644  3456666666666666666544333 456666666666666665


Q ss_pred             eec
Q 047797          430 TLK  432 (927)
Q Consensus       430 ~~~  432 (927)
                      ++.
T Consensus       324 ~~~  326 (347)
T 4fmz_A          324 TDI  326 (347)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.8e-30  Score=286.08  Aligned_cols=307  Identities=26%  Similarity=0.340  Sum_probs=189.2

Q ss_pred             CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCccccccc
Q 047797          364 LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQL  443 (927)
Q Consensus       364 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  443 (927)
                      +..+++|++|++++|.+... + .+..+++|++|++++|++++ ++.  +..+++|++|++++|.++..           
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~L~~n~i~~~-----------  103 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP--LSNLVKLTNLYIGTNKITDI-----------  103 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCC-----------
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh--hhcCCcCCEEEccCCcccCc-----------
Confidence            34566777777777777643 3 36677777777777777763 332  66677777777777665531           


Q ss_pred             ceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccC
Q 047797          444 KWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISS  523 (927)
Q Consensus       444 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~  523 (927)
                                     ..+..+++|++|++++|.+.+..+   ...+                                  
T Consensus       104 ---------------~~~~~l~~L~~L~l~~n~i~~~~~---~~~l----------------------------------  131 (347)
T 4fmz_A          104 ---------------SALQNLTNLRELYLNEDNISDISP---LANL----------------------------------  131 (347)
T ss_dssp             ---------------GGGTTCTTCSEEECTTSCCCCCGG---GTTC----------------------------------
T ss_pred             ---------------hHHcCCCcCCEEECcCCcccCchh---hccC----------------------------------
Confidence                           124555566666666665543221   1111                                  


Q ss_pred             CccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCcccc
Q 047797          524 NNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLK  603 (927)
Q Consensus       524 n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  603 (927)
                                 ++|++|++++|.....+..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +.
T Consensus       132 -----------~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~  196 (347)
T 4fmz_A          132 -----------TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LA  196 (347)
T ss_dssp             -----------TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GG
T ss_pred             -----------CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--cc
Confidence                       23333444444322222235556666666666666654332  5666666677776666664332  66


Q ss_pred             CCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhcccccccc
Q 047797          604 NCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ  683 (927)
Q Consensus       604 ~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~  683 (927)
                      .+++|+.|++++|.+.+..+  +. .+++|++|++++|++++..+  +..+++|++|++++|.+++.  ..+..      
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~------  263 (347)
T 4fmz_A          197 SLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD------  263 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT------
T ss_pred             CCCccceeecccCCCCCCch--hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc------
Confidence            66777777777776643332  33 56777777777777765433  66777777777777776642  12222      


Q ss_pred             ccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccc
Q 047797          684 EKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRN  763 (927)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N  763 (927)
                                                                  +++|+.|++++|++++.  ..+..+++|++|++++|
T Consensus       264 --------------------------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          264 --------------------------------------------LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             --------------------------------------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             --------------------------------------------CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence                                                        33457777777777664  34777788888888888


Q ss_pred             cccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797          764 NLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS  814 (927)
Q Consensus       764 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  814 (927)
                      ++++..|..++.+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8877777777788888888888888876655  677788888888888764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=8.9e-31  Score=309.45  Aligned_cols=308  Identities=22%  Similarity=0.226  Sum_probs=204.7

Q ss_pred             CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797          268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL  347 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L  347 (927)
                      +++.+++++|.+....+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|+.++      +|
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L  125 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP------LL  125 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC------CC
Confidence            334444444444433333344455555555555555444444455555555555555555544444444444      55


Q ss_pred             cEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccC
Q 047797          348 EGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD  426 (927)
Q Consensus       348 ~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  426 (927)
                      ++|++++|.+++.++. |+.+++|++|++++|.+++..|..|+.+++|++|++++|.+++. +   +..+++|+.|++++
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~---~~~l~~L~~L~l~~  201 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSY  201 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C---GGGCTTCSEEECCS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C---hhhhhhhhhhhccc
Confidence            5555555555544444 56666777777777777766666677777777777777777643 2   34566666666666


Q ss_pred             CcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCC
Q 047797          427 NSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKL  506 (927)
Q Consensus       427 n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  506 (927)
                      |.+.+..                             ..++|+.|++++|.+.                         .. 
T Consensus       202 n~l~~l~-----------------------------~~~~L~~L~ls~n~l~-------------------------~~-  226 (597)
T 3oja_B          202 NLLSTLA-----------------------------IPIAVEELDASHNSIN-------------------------VV-  226 (597)
T ss_dssp             SCCSEEE-----------------------------CCTTCSEEECCSSCCC-------------------------EE-
T ss_pred             Ccccccc-----------------------------CCchhheeeccCCccc-------------------------cc-
Confidence            6554311                             1123334444443332                         11 


Q ss_pred             CCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccE
Q 047797          507 PDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQT  586 (927)
Q Consensus       507 ~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  586 (927)
                                             .+..+.+|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..|..+++|+.
T Consensus       227 -----------------------~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          227 -----------------------RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             -----------------------ECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             -----------------------ccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence                                   111124577777777777774 56888999999999999999999999999999999


Q ss_pred             EEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccc
Q 047797          587 LSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNN  666 (927)
Q Consensus       587 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  666 (927)
                      |+|++|.+++ +|..+..+++|+.|+|++|++. .+|..+. .+++|++|++++|.+.+..   +..+++|+.|++++|+
T Consensus       283 L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          283 LYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             EECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSC
T ss_pred             EECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCC
Confidence            9999999996 4666778999999999999995 7888776 7999999999999998652   6778999999999999


Q ss_pred             cccc
Q 047797          667 ISGK  670 (927)
Q Consensus       667 l~~~  670 (927)
                      +.+.
T Consensus       357 ~~~~  360 (597)
T 3oja_B          357 WDCN  360 (597)
T ss_dssp             EEHH
T ss_pred             CCCh
Confidence            9864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=7.1e-33  Score=318.12  Aligned_cols=134  Identities=21%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             CceEeCcCCCCCC-----CCcccccCCCCCEEEccCccccccCC-----CcccccCcccEEEccccccccc----CCccc
Q 047797          537 STFLNLSKNKFSG-----LPDCWLNFNSLSILNLANNRFSGKIP-----DSMGFLHNIQTLSLRNNRLNGE----LPSSL  602 (927)
Q Consensus       537 L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~----~~~~~  602 (927)
                      |++|++++|.+++     ++..+..+++|++|++++|.+++...     ..+..+++|++|++++|.+++.    ++..+
T Consensus       201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  280 (461)
T 1z7x_W          201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL  280 (461)
T ss_dssp             CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred             ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence            4444444444444     34556677888888888888765321     1222467777777777777653    45556


Q ss_pred             cCCCCCCEEecCCCcCCCCCChhhhh----cCccCcEEEccCccccee----cCccccCCCCCCEEEccccccccc
Q 047797          603 KNCSKLRVLDLRKNALFGEVPTCVGG----SLQNLIILRLKSNNFHGN----IPFQLCHLAFIQVLDLSLNNISGK  670 (927)
Q Consensus       603 ~~l~~L~~L~Ls~N~l~~~~p~~~~~----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~  670 (927)
                      ..+++|++|++++|++.+..+..+..    ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++.
T Consensus       281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            66777777777777764333222221    124666666666666543    344445556666666666655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=2.9e-31  Score=288.48  Aligned_cols=282  Identities=17%  Similarity=0.188  Sum_probs=183.3

Q ss_pred             CCCCHHHHHHHHHhhhcCc-CCCCCcCCCCCC-CCCCCCccccceeec--------CCCCCEEEEECCCCchhhhhcccc
Q 047797           33 TRCIDEEREALLTFKQSLV-DEYGVLSSWGSE-DGKRDCCKWRGVRCS--------NTTGHVKVLNLQTSDHEFARRKFL  102 (927)
Q Consensus        33 ~~~~~~~~~~ll~~k~~~~-~~~~~~~~W~~~-~~~~~~c~w~gv~c~--------~~~~~v~~L~L~~~~~~~~~~~~l  102 (927)
                      ..+..+|++||++||+++. |+.+.+++|... ....++|.|.|+.|.        ...++|+.|+|++        +.+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~--------n~l   93 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS--------VPL   93 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES--------SCC
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC--------CCc
Confidence            3567889999999999994 777778899410 146789999999994        2346899999988        667


Q ss_pred             ccccCccccCCCCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcc
Q 047797          103 KGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLE  182 (927)
Q Consensus       103 ~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~  182 (927)
                      . .+|+.++++++|++|+|++|.++.  +|..++.+++|++|+|++|.+. .+|..++++++|++|++++|+...... .
T Consensus        94 ~-~lp~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p-~  168 (328)
T 4fcg_A           94 P-QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP-E  168 (328)
T ss_dssp             S-SCCSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC-S
T ss_pred             h-hcChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC-h
Confidence            6 788888889999999999999883  8888899999999999999888 778888889999999998866533211 1


Q ss_pred             cccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhH
Q 047797          183 RLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWL  262 (927)
Q Consensus       183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l  262 (927)
                      .+..      .+           ....++.+++|++|++++|.++..+   ..+.++ ++|++|++++|.++  .+|+.+
T Consensus       169 ~~~~------~~-----------~~~~~~~l~~L~~L~L~~n~l~~lp---~~l~~l-~~L~~L~L~~N~l~--~l~~~l  225 (328)
T 4fcg_A          169 PLAS------TD-----------ASGEHQGLVNLQSLRLEWTGIRSLP---ASIANL-QNLKSLKIRNSPLS--ALGPAI  225 (328)
T ss_dssp             CSEE------EC------------CCCEEESTTCCEEEEEEECCCCCC---GGGGGC-TTCCEEEEESSCCC--CCCGGG
T ss_pred             hHhh------cc-----------chhhhccCCCCCEEECcCCCcCcch---HhhcCC-CCCCEEEccCCCCC--cCchhh
Confidence            1111      00           0011233444455555554444222   123333 55555555555554  234444


Q ss_pred             hhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCC
Q 047797          263 FNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGC  342 (927)
Q Consensus       263 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~  342 (927)
                      ..+. +|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++.++   
T Consensus       226 ~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~---  301 (328)
T 4fcg_A          226 HHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP---  301 (328)
T ss_dssp             GGCT-TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC---
T ss_pred             ccCC-CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc---
Confidence            4444 566666666555555555566666666666666666556665666666666666666666666666666555   


Q ss_pred             cCCCccEEEccCCCC
Q 047797          343 TVNSLEGLCLYANDI  357 (927)
Q Consensus       343 ~~~~L~~L~L~~n~l  357 (927)
                         +|+.+++..+.+
T Consensus       302 ---~L~~l~l~~~~~  313 (328)
T 4fcg_A          302 ---ANCIILVPPHLQ  313 (328)
T ss_dssp             ---TTCEEECCGGGS
T ss_pred             ---CceEEeCCHHHH
Confidence               566666555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.1e-32  Score=316.59  Aligned_cols=365  Identities=18%  Similarity=0.119  Sum_probs=188.1

Q ss_pred             CccEEEccCCCCcccCCC--CCCCCCCCEEEccCCcCCC----cchhhhhccCCCCEEecCCcccccccChhhhhcCC--
Q 047797          346 SLEGLCLYANDITGPIPD--LGRFLSLKVLKLGENHLNG----TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMS--  417 (927)
Q Consensus       346 ~L~~L~L~~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--  417 (927)
                      +|++|++++|.++.....  +..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+...+..++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            566666666666543322  4555666666666666653    23444555566666666666665433333333344  


Q ss_pred             --CCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhc----cc
Q 047797          418 --NLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLS----IE  491 (927)
Q Consensus       418 --~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~----~~  491 (927)
                        +|++|++++|.++....                    ..++..+..+++|++|++++|.+++..+..+....    ++
T Consensus        84 ~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  143 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR  143 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence              45555555555442110                    12355566677777777777776654444443321    12


Q ss_pred             cceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCcccc
Q 047797          492 LFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFS  571 (927)
Q Consensus       492 L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~  571 (927)
                      |++|++++|.+++....                                        .++..+..+++|++|++++|.+.
T Consensus       144 L~~L~L~~n~l~~~~~~----------------------------------------~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          144 LEKLQLEYCSLSAASCE----------------------------------------PLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             CCEEECTTSCCBGGGHH----------------------------------------HHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ceEEECCCCCCCHHHHH----------------------------------------HHHHHHhhCCCCCEEECcCCCcc
Confidence            44444433333321100                                        02233444556666666666555


Q ss_pred             ccCCCcccc-----cCcccEEEccccccccc----CCccccCCCCCCEEecCCCcCCCCCC----hhhhhcCccCcEEEc
Q 047797          572 GKIPDSMGF-----LHNIQTLSLRNNRLNGE----LPSSLKNCSKLRVLDLRKNALFGEVP----TCVGGSLQNLIILRL  638 (927)
Q Consensus       572 ~~~~~~~~~-----l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~~l~~L~~L~L  638 (927)
                      +..+..+..     .++|++|++++|.+++.    ++..+..+++|++|++++|++.+...    ..+...+++|++|++
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L  263 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence            433332221     34566666666665542    34445555666666666665532211    111113556666666


Q ss_pred             cCccccee----cCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeE
Q 047797          639 KSNNFHGN----IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVL  714 (927)
Q Consensus       639 ~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (927)
                      ++|.++..    ++..+..+++|++|++++|.+++..+..+...-                                   
T Consensus       264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-----------------------------------  308 (461)
T 1z7x_W          264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-----------------------------------  308 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH-----------------------------------
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh-----------------------------------
Confidence            66666543    344555566666666666665543333222110                                   


Q ss_pred             EeeecccccccccccceeEEEccCCccccc----CccccccccCCCEEecccccccccCCccccC-----CCCCCeEeCC
Q 047797          715 LTWKGSEHEYKSTLGFVKYLDLSSNKLCEA----IPEEITDLVGLTALNLSRNNLTGLIPPKIGQ-----LKSLDFLDLS  785 (927)
Q Consensus       715 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls  785 (927)
                                ....+.|+.|++++|.+++.    ++..+..+++|++|+|++|++++..+..+..     .++|++|+++
T Consensus       309 ----------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  378 (461)
T 1z7x_W          309 ----------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA  378 (461)
T ss_dssp             ----------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             ----------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence                      00112446666666666554    3444555566666666666665544333332     4566666666


Q ss_pred             CCcCcc----cCCccccCCCCCCeEeCcCCcCcc
Q 047797          786 RNHFSG----NIPSSLSLLSGLSVLDLSYNSLSG  815 (927)
Q Consensus       786 ~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~~  815 (927)
                      +|++++    .+|..+..+++|++|++++|++++
T Consensus       379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            666664    555556666666666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=8.5e-29  Score=270.31  Aligned_cols=265  Identities=20%  Similarity=0.197  Sum_probs=177.3

Q ss_pred             ccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCC---CCCCceEeCcCCCCCCCCcccccCCCCCEEEccC
Q 047797          491 ELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPL---PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLAN  567 (927)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~  567 (927)
                      .+++|++++|.+++..+..+..+++|++|++++|.+.+..|..   +++|++|++++|+++.+|..+.  ++|++|++++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~  130 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHE  130 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCS
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCC
Confidence            4555555555555544444445555555555555555443332   3466677777777766665544  5777777777


Q ss_pred             ccccccCCCcccccCcccEEEcccccccc--cCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccce
Q 047797          568 NRFSGKIPDSMGFLHNIQTLSLRNNRLNG--ELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG  645 (927)
Q Consensus       568 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  645 (927)
                      |.+++..+..|.++++|++|++++|.+..  ..+..+.++++|++|++++|.+. .+|..+   .++|++|++++|++++
T Consensus       131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITK  206 (330)
T ss_dssp             SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCE
T ss_pred             CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCc
Confidence            77776666667777777777777777753  56667777777888888887773 455543   3677888888888777


Q ss_pred             ecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeeccccccc
Q 047797          646 NIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYK  725 (927)
Q Consensus       646 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  725 (927)
                      ..|..+..+++|++|++++|.+++..+..+..++.                                             
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---------------------------------------------  241 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH---------------------------------------------  241 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT---------------------------------------------
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC---------------------------------------------
Confidence            77777777888888888888777665555554433                                             


Q ss_pred             ccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccC------CCCCCeEeCCCCcCcc--cCCccc
Q 047797          726 STLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQ------LKSLDFLDLSRNHFSG--NIPSSL  797 (927)
Q Consensus       726 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~~--~~p~~l  797 (927)
                           |+.|++++|+++ .+|..+..+++|++|++++|++++..+..|..      .+.|+.|++++|.+..  ..|..|
T Consensus       242 -----L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f  315 (330)
T 1xku_A          242 -----LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  315 (330)
T ss_dssp             -----CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             -----CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence                 377888888776 46667777788888888888887776666643      3677778888887753  455667


Q ss_pred             cCCCCCCeEeCcCCc
Q 047797          798 SLLSGLSVLDLSYNS  812 (927)
Q Consensus       798 ~~l~~L~~L~ls~N~  812 (927)
                      ..+..++.+++++|+
T Consensus       316 ~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          316 RCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTCCCGGGEEC----
T ss_pred             ccccceeEEEecccC
Confidence            777778888887774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.5e-29  Score=274.69  Aligned_cols=199  Identities=21%  Similarity=0.244  Sum_probs=133.3

Q ss_pred             CCCCEEEccCccccccCCCcccccCcccEEEccccccc--ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcE
Q 047797          558 NSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN--GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII  635 (927)
Q Consensus       558 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~  635 (927)
                      ++|++|++++|.+++..+..|..+++|++|++++|.++  +..+..+..+ +|++|++++|++. .+|..+   .++|++
T Consensus       123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~  197 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNE  197 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSC
T ss_pred             ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCE
Confidence            45555555555555444444555666666666666554  2445555555 6666777777663 355443   256777


Q ss_pred             EEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEE
Q 047797          636 LRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLL  715 (927)
Q Consensus       636 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (927)
                      |++++|.+++..+..+..+++|++|++++|++++..+..+..++.                                   
T Consensus       198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------------------------------  242 (332)
T 2ft3_A          198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT-----------------------------------  242 (332)
T ss_dssp             CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-----------------------------------
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-----------------------------------
Confidence            777777777666677777777777777777777666555554443                                   


Q ss_pred             eeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCC------CCCCeEeCCCCcC
Q 047797          716 TWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQL------KSLDFLDLSRNHF  789 (927)
Q Consensus       716 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~Ls~N~l  789 (927)
                                     |+.|++++|+++ .+|..+.++++|++|++++|++++..+..|...      .+|+.|++++|.+
T Consensus       243 ---------------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          243 ---------------LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             ---------------CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             ---------------CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence                           377888888876 566678888888888888888887776666553      5688888888888


Q ss_pred             c--ccCCccccCCCCCCeEeCcCCc
Q 047797          790 S--GNIPSSLSLLSGLSVLDLSYNS  812 (927)
Q Consensus       790 ~--~~~p~~l~~l~~L~~L~ls~N~  812 (927)
                      .  +..|..|..+++|+.+++++|+
T Consensus       307 ~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          307 PYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccCcccccccchhhhhhccccc
Confidence            7  5667778888888888888874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2e-29  Score=272.28  Aligned_cols=258  Identities=26%  Similarity=0.299  Sum_probs=221.6

Q ss_pred             cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcc-cccCCCCCEEEccCcccccc--CCCcccccCcccEEEccccc
Q 047797          517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDC-WLNFNSLSILNLANNRFSGK--IPDSMGFLHNIQTLSLRNNR  593 (927)
Q Consensus       517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~N~  593 (927)
                      +.++.+++.++......++++++|++++|+++.+|.. +.++++|++|++++|.++..  .+..+..+++|++|++++|.
T Consensus        10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            3566666666655555577899999999999998765 68999999999999999843  35677789999999999999


Q ss_pred             ccccCCccccCCCCCCEEecCCCcCCCCCC-hhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc-cc
Q 047797          594 LNGELPSSLKNCSKLRVLDLRKNALFGEVP-TCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG-KI  671 (927)
Q Consensus       594 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~  671 (927)
                      ++ .+|..+..+++|++|++++|++.+..+ ..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+
T Consensus        90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTT-TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             cc-cChhhcCCCCCCCEEECCCCcccccccchhhh-hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            98 467779999999999999999965544 3444 79999999999999999999999999999999999999986 46


Q ss_pred             chhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCcccccc
Q 047797          672 PKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITD  751 (927)
Q Consensus       672 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~  751 (927)
                      |..+..++                                                  +|+.|++++|++++..|..|.+
T Consensus       168 ~~~~~~l~--------------------------------------------------~L~~L~Ls~n~l~~~~~~~~~~  197 (306)
T 2z66_A          168 PDIFTELR--------------------------------------------------NLTFLDLSQCQLEQLSPTAFNS  197 (306)
T ss_dssp             CSCCTTCT--------------------------------------------------TCCEEECTTSCCCEECTTTTTT
T ss_pred             hhHHhhCc--------------------------------------------------CCCEEECCCCCcCCcCHHHhcC
Confidence            66665544                                                  4499999999999999999999


Q ss_pred             ccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCC-CCCeEeCcCCcCcccCCCCCcCCCC
Q 047797          752 LVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLS-GLSVLDLSYNSLSGKIPLGTQLQSF  826 (927)
Q Consensus       752 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~  826 (927)
                      +++|++|+|++|++++..+..+..+++|++||+++|++++..|..+..++ +|++|++++|+++|.|+......++
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l  273 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  273 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence            99999999999999998888899999999999999999999999999984 9999999999999998764444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.1e-28  Score=267.43  Aligned_cols=152  Identities=23%  Similarity=0.308  Sum_probs=77.4

Q ss_pred             CccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEe
Q 047797          242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLY  321 (927)
Q Consensus       242 ~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  321 (927)
                      +++.++++++.++  .+|..+.   +++++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus        34 ~l~~l~~~~~~l~--~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK--AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS--SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc--ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            4555555555553  3333221   2455555555555544444455555555555555555544444455555555555


Q ss_pred             CCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCC
Q 047797          322 LPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG  401 (927)
Q Consensus       322 L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~  401 (927)
                      +++|.+                              +...+.+.  ++|++|++++|.+++..+..+.++++|++|++++
T Consensus       109 L~~n~l------------------------------~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  156 (332)
T 2ft3_A          109 ISKNHL------------------------------VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG  156 (332)
T ss_dssp             CCSSCC------------------------------CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred             CCCCcC------------------------------CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence            544444                              42222222  4666666666666655555566666666666666


Q ss_pred             ccccc-ccChhhhhcCCCCCEEEccCCccee
Q 047797          402 NSFTG-VISETFFSNMSNLQMLFLADNSLTL  431 (927)
Q Consensus       402 n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~  431 (927)
                      |.++. .+....+..+ +|++|++++|+++.
T Consensus       157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          157 NPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            66642 1222234444 56666666665554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=9e-31  Score=310.76  Aligned_cols=314  Identities=12%  Similarity=0.114  Sum_probs=163.3

Q ss_pred             CCccccceeecCCCCCEEEEECCCCchhhhhccccccccCccccCCCCCCeeeCCCCCCC---CCCCCcccc--------
Q 047797           68 DCCKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFG---GSPVPEFIG--------  136 (927)
Q Consensus        68 ~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~---~~~lp~~l~--------  136 (927)
                      -|++|.++.+..  .  ..+.+..         ......+..+.++++|++|+|+++...   +. +|..++        
T Consensus        40 vck~W~~~~~~~--~--~~l~~~~---------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~  105 (592)
T 3ogk_B           40 VCRRWFKIDSET--R--EHVTMAL---------CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVT  105 (592)
T ss_dssp             SCHHHHHHHHHH--C--CEEEESC---------GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHH
T ss_pred             HhHHHHHhhhcc--c--cEEEEee---------ccccChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHH
Confidence            456899986531  1  2233332         122333455678899999999886421   11 332222        


Q ss_pred             ----CCCCCCEEECCCCCCCCCCCccCCCC--CCCcEEecCCCCccCCCCccc-ccCCCCCcEEECCCccCCCCCc--hH
Q 047797          137 ----SLSKLRYLNLSCGTPSSKIPHPFRDL--SGFEYFNVENSNLFSVGSLER-LSHLSSLRHLDLSCINLTKSSD--WF  207 (927)
Q Consensus       137 ----~l~~L~~L~Ls~n~~~~~~p~~l~~l--~~L~~L~Ls~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~--~~  207 (927)
                          .+++|++|+|++|.+++..+..+++.  .+|++|++++|.......+.. ..++++|++|+|++|.+++...  +.
T Consensus       106 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  185 (592)
T 3ogk_B          106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH  185 (592)
T ss_dssp             HHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred             HHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH
Confidence                57778888887776665555555442  337777776655322211211 1245555555555554433211  22


Q ss_pred             HhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCC---CcchhHhhcccCccEEEccCCcCcCCcc
Q 047797          208 QVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSS---SVYPWLFNLSRNILHLDLGFNHLQGSIP  284 (927)
Q Consensus       208 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~---~~~~~l~~~~~~L~~L~Ls~n~i~~~~~  284 (927)
                      .....+                           ++|++|++++|.+++.   .++..+..++ +|++|++++|.+.+ ++
T Consensus       186 ~~~~~~---------------------------~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~-l~  236 (592)
T 3ogk_B          186 ELAQHN---------------------------TSLEVLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILE-LV  236 (592)
T ss_dssp             HHHHHC---------------------------CCCCEEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGG-GH
T ss_pred             HHHhcC---------------------------CCccEEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHH-HH
Confidence            223333                           5555555555555321   1122222333 66666666666654 55


Q ss_pred             hhhhcCCCCCEEEccCCcCC---CcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccC
Q 047797          285 EAFQHMVSLRLLSLASNELE---GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPI  361 (927)
Q Consensus       285 ~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~  361 (927)
                      ..+..+++|++|+++.....   ...+..+..+++|+.|+++++. .+.+|..+..++      +|++|++++|.+++..
T Consensus       237 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~------~L~~L~Ls~~~l~~~~  309 (592)
T 3ogk_B          237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAA------QIRKLDLLYALLETED  309 (592)
T ss_dssp             HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGG------GCCEEEETTCCCCHHH
T ss_pred             HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcC------CCcEEecCCCcCCHHH
Confidence            66666677777776643222   2233445566666666666542 234455555555      6666666666654332


Q ss_pred             C-C-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCC-----------cccccccChhhhhcCCCCCEEEccCCc
Q 047797          362 P-D-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG-----------NSFTGVISETFFSNMSNLQMLFLADNS  428 (927)
Q Consensus       362 ~-~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~l~~L~~L~L~~n~  428 (927)
                      . . +..+++|++|+++++...+.++..+..+++|++|++++           |.+++.........+++|++|+++.|.
T Consensus       310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  389 (592)
T 3ogk_B          310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD  389 (592)
T ss_dssp             HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred             HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence            2 1 45666677776663222222333345566777777762           444432222234456666666665555


Q ss_pred             cee
Q 047797          429 LTL  431 (927)
Q Consensus       429 l~~  431 (927)
                      +++
T Consensus       390 l~~  392 (592)
T 3ogk_B          390 ITN  392 (592)
T ss_dssp             CCH
T ss_pred             ccH
Confidence            544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=6.4e-28  Score=263.38  Aligned_cols=197  Identities=23%  Similarity=0.253  Sum_probs=113.8

Q ss_pred             cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797          241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL  320 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  320 (927)
                      .+++.++++++.++  .+|..+   .+++++|++++|++++..+..|+++++|++|++++|++++..|..|.++++|++|
T Consensus        31 c~l~~l~~~~~~l~--~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLE--KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCC--SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCeEEEecCCCcc--ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            46777777777764  344432   2367777777777776666667777777777777777776666667777667777


Q ss_pred             eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecC
Q 047797          321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLD  400 (927)
Q Consensus       321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  400 (927)
                      ++++|.++.. |                             ..+.  ++|++|++++|.+++..+..+.++++|++|+++
T Consensus       106 ~Ls~n~l~~l-~-----------------------------~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  153 (330)
T 1xku_A          106 YLSKNQLKEL-P-----------------------------EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG  153 (330)
T ss_dssp             ECCSSCCSBC-C-----------------------------SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred             ECCCCcCCcc-C-----------------------------hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence            7666665521 1                             1111  466666777776666666666777777777777


Q ss_pred             Cccccc-ccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCcc
Q 047797          401 GNSFTG-VISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGI  477 (927)
Q Consensus       401 ~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l  477 (927)
                      +|.+.. .+....+..+++|++|++++|.++......+   ++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  228 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI  228 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            776642 1222346667777777777776653221111   3344444444443333344444444444444444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.2e-28  Score=262.97  Aligned_cols=249  Identities=21%  Similarity=0.164  Sum_probs=206.6

Q ss_pred             ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797          538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA  617 (927)
Q Consensus       538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  617 (927)
                      +.++.+++.++.+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            56778888888887654  4688999999999988777888889999999999999988888889999999999999997


Q ss_pred             -CCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccc
Q 047797          618 -LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANE  696 (927)
Q Consensus       618 -l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  696 (927)
                       +.+..|..+. .+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+.+++.                
T Consensus        92 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------  154 (285)
T 1ozn_A           92 QLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN----------------  154 (285)
T ss_dssp             TCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----------------
T ss_pred             CccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC----------------
Confidence             6444455555 7899999999999999888888899999999999999998766665655444                


Q ss_pred             cccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCC
Q 047797          697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQL  776 (927)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  776 (927)
                                                        |+.|++++|++++..+..|.++++|++|++++|++++..|..+..+
T Consensus       155 ----------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  200 (285)
T 1ozn_A          155 ----------------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (285)
T ss_dssp             ----------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             ----------------------------------ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc
Confidence                                              4899999999998888889999999999999999999999999999


Q ss_pred             CCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCC
Q 047797          777 KSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCG  839 (927)
Q Consensus       777 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~  839 (927)
                      ++|+.|++++|++++..+..+..+++|++|++++|++.|.++......++.......+...|.
T Consensus       201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~  263 (285)
T 1ozn_A          201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS  263 (285)
T ss_dssp             TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred             ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence            999999999999998777779999999999999999999988755444544433333433343

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.3e-27  Score=272.80  Aligned_cols=253  Identities=23%  Similarity=0.229  Sum_probs=221.4

Q ss_pred             CCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCC-CCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc
Q 047797          515 DDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSG-LPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR  593 (927)
Q Consensus       515 ~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  593 (927)
                      ....++.++..++......+.++++|++++|++++ .|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            34567777777776555567899999999999999 56789999999999999999999988999999999999999999


Q ss_pred             ccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcc-cceecCccccCCCCCCEEEccccccccccc
Q 047797          594 LNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNN-FHGNIPFQLCHLAFIQVLDLSLNNISGKIP  672 (927)
Q Consensus       594 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  672 (927)
                      +++..+..|..+++|++|+|++|++. .+|...+..+++|++|++++|+ +....+..+.++++|++|++++|++++. |
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~  212 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P  212 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred             CCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence            99888888999999999999999995 4554444479999999999955 4444445789999999999999999853 3


Q ss_pred             hhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccc
Q 047797          673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDL  752 (927)
Q Consensus       673 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l  752 (927)
                      . +..                                                  +++|+.|+|++|++++..|..|.++
T Consensus       213 ~-~~~--------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l  241 (452)
T 3zyi_A          213 N-LTP--------------------------------------------------LVGLEELEMSGNHFPEIRPGSFHGL  241 (452)
T ss_dssp             C-CTT--------------------------------------------------CTTCCEEECTTSCCSEECGGGGTTC
T ss_pred             c-ccc--------------------------------------------------cccccEEECcCCcCcccCcccccCc
Confidence            1 222                                                  4456999999999999999999999


Q ss_pred             cCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC
Q 047797          753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG  820 (927)
Q Consensus       753 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  820 (927)
                      ++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.|.|...
T Consensus       242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence            99999999999999999999999999999999999999888888999999999999999999998864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.4e-28  Score=263.36  Aligned_cols=226  Identities=22%  Similarity=0.316  Sum_probs=203.3

Q ss_pred             CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797          535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR  614 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  614 (927)
                      ..++.|++++|+++.+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.++++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence            5688999999999999999999999999999999999 88999999999999999999999 789999999999999999


Q ss_pred             CCcCCCCCChhhhh--------cCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccC
Q 047797          615 KNALFGEVPTCVGG--------SLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKS  686 (927)
Q Consensus       615 ~N~l~~~~p~~~~~--------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~  686 (927)
                      +|++.+.+|..+..        .+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..++.      
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~------  230 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK------  230 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT------
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC------
Confidence            99888999987641        3899999999999998 788889999999999999999985 5555655444      


Q ss_pred             CCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccccccc
Q 047797          687 SNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLT  766 (927)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  766 (927)
                                                                  |+.|++++|++.+.+|..++++++|++|+|++|++.
T Consensus       231 --------------------------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          231 --------------------------------------------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             --------------------------------------------CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred             --------------------------------------------CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence                                                        499999999999999999999999999999999999


Q ss_pred             ccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797          767 GLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS  814 (927)
Q Consensus       767 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  814 (927)
                      +.+|..++++++|++|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus       267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            999999999999999999999999999999999999999999877554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.4e-27  Score=269.59  Aligned_cols=254  Identities=22%  Similarity=0.210  Sum_probs=221.1

Q ss_pred             CCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCC-CcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc
Q 047797          515 DDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR  593 (927)
Q Consensus       515 ~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  593 (927)
                      ....++.++..++......+.+++.|++++|+++++ +..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            345677777777766666678999999999999994 5789999999999999999998888899999999999999999


Q ss_pred             ccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccc-ceecCccccCCCCCCEEEccccccccccc
Q 047797          594 LNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF-HGNIPFQLCHLAFIQVLDLSLNNISGKIP  672 (927)
Q Consensus       594 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  672 (927)
                      +++..+..|..+++|++|++++|++.+..+..+. .+++|++|++++|+. ....+..+.++++|++|++++|+++. +|
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP  201 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhh-hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc
Confidence            9988788899999999999999999544444444 799999999999554 44445578999999999999999983 33


Q ss_pred             hhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccc
Q 047797          673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDL  752 (927)
Q Consensus       673 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l  752 (927)
                      . +.                                                  .+++|+.|||++|++++..|..|.++
T Consensus       202 ~-~~--------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l  230 (440)
T 3zyj_A          202 N-LT--------------------------------------------------PLIKLDELDLSGNHLSAIRPGSFQGL  230 (440)
T ss_dssp             C-CT--------------------------------------------------TCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred             c-cC--------------------------------------------------CCcccCEEECCCCccCccChhhhccC
Confidence            2 22                                                  24456999999999999999999999


Q ss_pred             cCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCC
Q 047797          753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT  821 (927)
Q Consensus       753 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~  821 (927)
                      ++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..|..+++|+.|++++|++.|.|...+
T Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~  299 (440)
T 3zyj_A          231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW  299 (440)
T ss_dssp             TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred             ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence            999999999999999999999999999999999999998888889999999999999999999987643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.3e-29  Score=300.78  Aligned_cols=235  Identities=13%  Similarity=0.033  Sum_probs=136.7

Q ss_pred             CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCC-CcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIP-DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      .+|+.|+++++....+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L  349 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI  349 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence            35556666655444466666667777777777777654332 23466777777777733333333444456777777777


Q ss_pred             CC-----------CcCCCCCChhhhhcCccCcEEEccCcccceecCccccC-CCCCCEEEcc----ccccccccch-hhc
Q 047797          614 RK-----------NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCH-LAFIQVLDLS----LNNISGKIPK-CFS  676 (927)
Q Consensus       614 s~-----------N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls----~N~l~~~~p~-~~~  676 (927)
                      ++           |.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++...+ .+.
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~  429 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR  429 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred             ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence            73           44433222222335777777777777777665555544 7777777775    4555532110 010


Q ss_pred             cccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCC--cccccCcccccc-cc
Q 047797          677 NFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN--KLCEAIPEEITD-LV  753 (927)
Q Consensus       677 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N--~l~~~~p~~~~~-l~  753 (927)
                      .                                              ....+++|+.|++++|  .+++..+..+.. ++
T Consensus       430 ~----------------------------------------------~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~  463 (592)
T 3ogk_B          430 S----------------------------------------------LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP  463 (592)
T ss_dssp             H----------------------------------------------HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred             H----------------------------------------------HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence            0                                              0112344577777643  355544444433 67


Q ss_pred             CCCEEeccccccccc-CCccccCCCCCCeEeCCCCcCccc-CCccccCCCCCCeEeCcCCcCcc
Q 047797          754 GLTALNLSRNNLTGL-IPPKIGQLKSLDFLDLSRNHFSGN-IPSSLSLLSGLSVLDLSYNSLSG  815 (927)
Q Consensus       754 ~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~~  815 (927)
                      +|++|+|++|++++. ++..+..+++|++|+|++|.+++. ++.....+++|++|++++|+++.
T Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            777777777777652 234446667777777777776544 33334556777777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.9e-28  Score=267.70  Aligned_cols=273  Identities=20%  Similarity=0.209  Sum_probs=187.7

Q ss_pred             EEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccc
Q 047797          518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNG  596 (927)
Q Consensus       518 ~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  596 (927)
                      ..+.+++.++......++++++|++++|+++++|. .+.++++|++|++++|.+++..+..|.++++|++|++++|++++
T Consensus        35 ~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  114 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN  114 (353)
T ss_dssp             EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred             EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence            35555555555444445677777777777777544 66777777777777777777666677777777777777777775


Q ss_pred             cCCccccCCCCCCEEecCCCcCCCCCCh-hhhhcCccCcEEEccCc-ccceecCccccCCCCCCEEEccccccccccchh
Q 047797          597 ELPSSLKNCSKLRVLDLRKNALFGEVPT-CVGGSLQNLIILRLKSN-NFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKC  674 (927)
Q Consensus       597 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~  674 (927)
                      ..+..|.++++|++|++++|++. .+|. .....+++|++|++++| .+.+..+..+.++++|++|++++|++++..|..
T Consensus       115 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (353)
T 2z80_A          115 LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS  193 (353)
T ss_dssp             CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence            55555777777777777777774 4444 22225777777777777 355555666777777777777777777766766


Q ss_pred             hcccccccccc-CCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccc---
Q 047797          675 FSNFSMMIQEK-SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEIT---  750 (927)
Q Consensus       675 ~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~---  750 (927)
                      +.+++.+.... ..+.+                           ......+...+++|+.|++++|++++..+..+.   
T Consensus       194 l~~l~~L~~L~l~~n~l---------------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~  246 (353)
T 2z80_A          194 LKSIQNVSHLILHMKQH---------------------------ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE  246 (353)
T ss_dssp             TTTCSEEEEEEEECSCS---------------------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred             HhccccCCeecCCCCcc---------------------------ccchhhhhhhcccccEEECCCCcccccccccccccc
Confidence            66665552211 00000                           011112223466789999999999887665543   


Q ss_pred             cccCCCEEecccccccc----cCCccccCCCCCCeEeCCCCcCcccCCcc-ccCCCCCCeEeCcCCcCcccCCC
Q 047797          751 DLVGLTALNLSRNNLTG----LIPPKIGQLKSLDFLDLSRNHFSGNIPSS-LSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       751 ~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      ....++.++|++|.+++    .+|+.+..+++|++||+++|+++ .+|.. |..+++|++|++++|++.|.||.
T Consensus       247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            45678888888888876    36778899999999999999999 45555 68999999999999999999884

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=4.5e-27  Score=250.85  Aligned_cols=252  Identities=22%  Similarity=0.268  Sum_probs=216.4

Q ss_pred             cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCC-cccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc-c
Q 047797          517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR-L  594 (927)
Q Consensus       517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l  594 (927)
                      ..++.+++.++......++++++|++++|++++++ ..+..+++|++|++++|.+++..|..|..+++|++|++++|. +
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l   93 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence            45677777776554456789999999999999955 678899999999999999999889999999999999999997 8


Q ss_pred             cccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchh
Q 047797          595 NGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKC  674 (927)
Q Consensus       595 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~  674 (927)
                      ....|..|..+++|++|++++|++.+..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..
T Consensus        94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  172 (285)
T 1ozn_A           94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence            877789999999999999999999776676665 7999999999999999877778999999999999999998766655


Q ss_pred             hccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccC
Q 047797          675 FSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG  754 (927)
Q Consensus       675 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~  754 (927)
                      +..++.                                                  |+.|++++|++++..|..|.++++
T Consensus       173 ~~~l~~--------------------------------------------------L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          173 FRGLHS--------------------------------------------------LDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             TTTCTT--------------------------------------------------CCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hcCccc--------------------------------------------------cCEEECCCCcccccCHhHccCccc
Confidence            665444                                                  499999999999999999999999


Q ss_pred             CCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC
Q 047797          755 LTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG  820 (927)
Q Consensus       755 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  820 (927)
                      |++|++++|++++..+..+..+++|++|++++|++....+.. .-...++.++.+.|.+.|..|..
T Consensus       203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            999999999999887788999999999999999998654422 11133556668899999999863

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.2e-26  Score=250.53  Aligned_cols=275  Identities=20%  Similarity=0.237  Sum_probs=215.5

Q ss_pred             cEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCC
Q 047797          468 ISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKF  547 (927)
Q Consensus       468 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l  547 (927)
                      +.++.+++.++. +|..+   .+++++|++++|.++...+..+..                     +++|++|++++|++
T Consensus        10 ~~l~c~~~~l~~-ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~---------------------l~~L~~L~L~~n~l   64 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGI---PSSATRLELESNKLQSLPHGVFDK---------------------LTQLTKLSLSSNGL   64 (306)
T ss_dssp             TEEECCSSCCSS-CCSCC---CTTCCEEECCSSCCCCCCTTTTTT---------------------CTTCSEEECCSSCC
T ss_pred             CEEEcCCCCccc-CCCCC---CCCCCEEECCCCccCccCHhHhhc---------------------cccCCEEECCCCcc
Confidence            456666666643 33322   135566666665555322222222                     45677888888887


Q ss_pred             CCC---CcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCC-ccccCCCCCCEEecCCCcCCCCCC
Q 047797          548 SGL---PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP-SSLKNCSKLRVLDLRKNALFGEVP  623 (927)
Q Consensus       548 ~~l---p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p  623 (927)
                      +.+   |..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|
T Consensus        65 ~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  143 (306)
T 2z66_A           65 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN  143 (306)
T ss_dssp             CEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred             CcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence            753   5677788999999999999984 56678899999999999999987665 678899999999999999977777


Q ss_pred             hhhhhcCccCcEEEccCcccce-ecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccc
Q 047797          624 TCVGGSLQNLIILRLKSNNFHG-NIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPG  702 (927)
Q Consensus       624 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  702 (927)
                      ..+. .+++|++|++++|.+.+ .+|..+..+++|++|++++|++++..|..+..++.|                     
T Consensus       144 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------  201 (306)
T 2z66_A          144 GIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL---------------------  201 (306)
T ss_dssp             TTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------
T ss_pred             hhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC---------------------
Confidence            7666 68999999999999987 678899999999999999999998777777665544                     


Q ss_pred             cceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCC-CCCe
Q 047797          703 YIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK-SLDF  781 (927)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~  781 (927)
                                                   +.|++++|++++..+..+.++++|++|+|++|++++..|..+..++ +|++
T Consensus       202 -----------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~  252 (306)
T 2z66_A          202 -----------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF  252 (306)
T ss_dssp             -----------------------------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred             -----------------------------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence                                         9999999999998888899999999999999999999999999985 9999


Q ss_pred             EeCCCCcCcccCC--ccccCCCCCCeEeCcCCcCcccCCC
Q 047797          782 LDLSRNHFSGNIP--SSLSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       782 L~Ls~N~l~~~~p--~~l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      |+|++|++++..+  .....+...+.+.+..+.+.|..|.
T Consensus       253 L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          253 LNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             EECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             EEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            9999999986532  1122334455667778888888775

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.4e-25  Score=255.83  Aligned_cols=251  Identities=23%  Similarity=0.229  Sum_probs=216.4

Q ss_pred             CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797          536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK  615 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  615 (927)
                      ....++.++..++.+|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            45688999999999997665  6899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccch-hhccccccccccCCCCccccc
Q 047797          616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPK-CFSNFSMMIQEKSSNPIIGLA  694 (927)
Q Consensus       616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~  694 (927)
                      |++++..+..+. .+++|++|++++|++.+..+..+.++++|++|++++|+..+.++. .|.+                 
T Consensus       133 n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-----------------  194 (452)
T 3zyi_A          133 NWLTVIPSGAFE-YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-----------------  194 (452)
T ss_dssp             SCCSBCCTTTSS-SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-----------------
T ss_pred             CcCCccChhhhc-ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-----------------
Confidence            999654444454 799999999999999988888899999999999999654444443 3444                 


Q ss_pred             cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc
Q 047797          695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG  774 (927)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  774 (927)
                                                       +++|+.|+|++|++++. | .+..+++|++|+|++|++++..|..|.
T Consensus       195 ---------------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~  239 (452)
T 3zyi_A          195 ---------------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFH  239 (452)
T ss_dssp             ---------------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred             ---------------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCccccc
Confidence                                             34559999999999875 4 588999999999999999999999999


Q ss_pred             CCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC-CcCCCCcccccCCCCCCCCCC
Q 047797          775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG-TQLQSFNASVYAGNLELCGLP  841 (927)
Q Consensus       775 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~  841 (927)
                      ++++|+.|+|++|++++..|..|..+++|++|++++|++++..+.. ..+..+....+.+|+.-|++.
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            9999999999999999999999999999999999999999654432 234556666788999888754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2e-25  Score=253.63  Aligned_cols=250  Identities=21%  Similarity=0.233  Sum_probs=216.5

Q ss_pred             CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797          536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK  615 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  615 (927)
                      ..+.++.++.+++.+|..+.  ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            45689999999999998765  6899999999999999889999999999999999999998889999999999999999


Q ss_pred             CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccc-hhhccccccccccCCCCccccc
Q 047797          616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP-KCFSNFSMMIQEKSSNPIIGLA  694 (927)
Q Consensus       616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~l~~~~~~~~~~~~~  694 (927)
                      |++++..+..+. .+++|++|++++|++....+..+..+++|++|++++|+..+.++ ..|.++                
T Consensus       122 n~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l----------------  184 (440)
T 3zyj_A          122 NRLTTIPNGAFV-YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL----------------  184 (440)
T ss_dssp             SCCSSCCTTTSC-SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC----------------
T ss_pred             CcCCeeCHhHhh-ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc----------------
Confidence            999654444454 79999999999999998888899999999999999965444443 344443                


Q ss_pred             cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc
Q 047797          695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG  774 (927)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  774 (927)
                                                        ++|+.|+|++|+++.. | .+..+++|++|+|++|++++..|..|.
T Consensus       185 ----------------------------------~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~  228 (440)
T 3zyj_A          185 ----------------------------------SNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQ  228 (440)
T ss_dssp             ----------------------------------SSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred             ----------------------------------cccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhc
Confidence                                              4559999999999864 4 488999999999999999999999999


Q ss_pred             CCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC-CcCCCCcccccCCCCCCCCC
Q 047797          775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG-TQLQSFNASVYAGNLELCGL  840 (927)
Q Consensus       775 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~  840 (927)
                      ++++|+.|+|++|++++..|..|..+++|++|++++|++++..+.. ..+..+....+.+|+..|++
T Consensus       229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            9999999999999999999999999999999999999999654432 33456666678899988875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.3e-25  Score=238.31  Aligned_cols=228  Identities=23%  Similarity=0.219  Sum_probs=175.7

Q ss_pred             EeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCC
Q 047797          540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF  619 (927)
Q Consensus       540 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  619 (927)
                      .+..+.+++.+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++.
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            4455555666665443  46777777777777666667777777777777777777766667777778888888888775


Q ss_pred             CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccc-cchhhccccccccccCCCCccccccccc
Q 047797          620 GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGK-IPKCFSNFSMMIQEKSSNPIIGLANEIL  698 (927)
Q Consensus       620 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~  698 (927)
                      +..+..+. .+++|++|++++|++.+..+..+..+++|++|++++|++++. +|..+.+++.|                 
T Consensus        90 ~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-----------------  151 (276)
T 2z62_A           90 SLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-----------------  151 (276)
T ss_dssp             EECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------
T ss_pred             ccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------
Confidence            55555554 677888888888888776666778888888888888888763 46666654444                 


Q ss_pred             cccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCC----EEecccccccccCCcccc
Q 047797          699 VVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLT----ALNLSRNNLTGLIPPKIG  774 (927)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~  774 (927)
                                                       +.|++++|++++..+..+..+++|+    +|++++|++++..+..+.
T Consensus       152 ---------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~  198 (276)
T 2z62_A          152 ---------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK  198 (276)
T ss_dssp             ---------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred             ---------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence                                             8888888888888888888887777    899999999987666665


Q ss_pred             CCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCC
Q 047797          775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT  821 (927)
Q Consensus       775 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~  821 (927)
                      . .+|++|++++|++++..+..+..+++|++|++++|++.|.||.-.
T Consensus       199 ~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          199 E-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             S-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             C-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence            4 489999999999998777778999999999999999999998643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=6.8e-28  Score=260.45  Aligned_cols=224  Identities=25%  Similarity=0.264  Sum_probs=182.6

Q ss_pred             CCceEeCcCCCCCC--CCcccc-------cCCCCCEEEccCccccccCCCcc--cccCcccEEEcccccccccCCccccC
Q 047797          536 NSTFLNLSKNKFSG--LPDCWL-------NFNSLSILNLANNRFSGKIPDSM--GFLHNIQTLSLRNNRLNGELPSSLKN  604 (927)
Q Consensus       536 ~L~~L~L~~n~l~~--lp~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~  604 (927)
                      .++.|++++|+++.  +|..+.       ++++|++|++++|.+++.+|..+  ..+++|++|++++|++++. |..+..
T Consensus        64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred             HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence            36777777777754  666554       68899999999999998888876  8899999999999999977 777777


Q ss_pred             C-----CCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccccee--cCccc--cCCCCCCEEEccccccccc--cch
Q 047797          605 C-----SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN--IPFQL--CHLAFIQVLDLSLNNISGK--IPK  673 (927)
Q Consensus       605 l-----~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~Ls~N~l~~~--~p~  673 (927)
                      +     ++|++|++++|++.+..|..+. .+++|++|++++|++.+.  .+..+  ..+++|++|++++|++++.  ++.
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence            6     8999999999999776667776 799999999999998765  33344  7899999999999998732  111


Q ss_pred             hhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCc-cccccc
Q 047797          674 CFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP-EEITDL  752 (927)
Q Consensus       674 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l  752 (927)
                      .+                                                 +..+++|+.||+++|++++.+| ..+..+
T Consensus       222 ~~-------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          222 AL-------------------------------------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             HH-------------------------------------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             HH-------------------------------------------------HhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            11                                                 1224556999999999999875 566778


Q ss_pred             cCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797          753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG  815 (927)
Q Consensus       753 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  815 (927)
                      ++|++|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            99999999999999 6787776  8999999999999976 66 8899999999999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=9.5e-26  Score=248.55  Aligned_cols=202  Identities=21%  Similarity=0.247  Sum_probs=137.5

Q ss_pred             CCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCC
Q 047797          292 SLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSL  370 (927)
Q Consensus       292 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L  370 (927)
                      .....++++++++. +|..+.  ++|++|++++|.+++..+..+..++      +|++|++++|.+++..+. +.++++|
T Consensus        32 ~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           32 RNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCV------NLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             TTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCT------TCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCC------CCCEEECCCCccCccCHhhcCCCCCC
Confidence            33344555555542 333222  2555555555555554444455554      666666666666655555 7777788


Q ss_pred             CEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccCh-hhhhcCCCCCEEEccCC-cceecccCCcccccccceeec
Q 047797          371 KVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISE-TFFSNMSNLQMLFLADN-SLTLKLSHDWVPAFQLKWLSL  448 (927)
Q Consensus       371 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~L  448 (927)
                      ++|++++|.+++..+..++++++|++|++++|++++ +|. ..+..+++|++|++++| .+....+..+..+++|++|++
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence            888888888876666667888888888888888874 443 45777888888888887 466666677778888888888


Q ss_pred             ccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccC
Q 047797          449 ASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG  504 (927)
Q Consensus       449 ~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  504 (927)
                      ++|.+.+..|..+..+++|++|++++|.+. .+|..+....++|++|++++|.+++
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence            888888777888888888999999988874 4555555555677777777776654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=9e-25  Score=255.04  Aligned_cols=287  Identities=22%  Similarity=0.195  Sum_probs=152.0

Q ss_pred             CCcCCCCCCCCCCCCccccceeec------CCCCCEEEEECCCCchhhhhccccccccCccccCCCCCCeeeCCCCCCCC
Q 047797           55 GVLSSWGSEDGKRDCCKWRGVRCS------NTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGG  128 (927)
Q Consensus        55 ~~~~~W~~~~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~  128 (927)
                      ...++|.   .+.+||.|+|..|.      .....++.|++++        +.++ .+|..+.  ++|++|+|++|.++.
T Consensus        10 ~~w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~--------n~L~-~lp~~l~--~~L~~L~L~~N~l~~   75 (622)
T 3g06_A           10 AVWSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE--------SGLT-TLPDCLP--AHITTLVIPDNNLTS   75 (622)
T ss_dssp             CHHHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS--------SCCS-CCCSCCC--TTCSEEEECSCCCSC
T ss_pred             HHHHHHH---hcCCcchhccccccCcccccccCCCCcEEEecC--------CCcC-ccChhhC--CCCcEEEecCCCCCC
Confidence            4556776   46789999775331      0122467777776        5555 5666554  677777777777765


Q ss_pred             CCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHH
Q 047797          129 SPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQ  208 (927)
Q Consensus       129 ~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  208 (927)
                        +|.   .+++|++|+|++|.+++ +|.   .+++|++|++++|.+...+.     .+++|++|++++|.++..+.   
T Consensus        76 --lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~---  138 (622)
T 3g06_A           76 --LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV---  138 (622)
T ss_dssp             --CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC---
T ss_pred             --CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC---
Confidence              555   46777777777777653 444   56677777776666544332     45566666666666555322   


Q ss_pred             hhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhh
Q 047797          209 VVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQ  288 (927)
Q Consensus       209 ~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  288 (927)
                         .+++|++|++++|.+++.+..       +++|+.|++++|.+++  +|    ...++|+.|++++|.+++ +|.   
T Consensus       139 ---~l~~L~~L~Ls~N~l~~l~~~-------~~~L~~L~L~~N~l~~--l~----~~~~~L~~L~Ls~N~l~~-l~~---  198 (622)
T 3g06_A          139 ---LPPGLQELSVSDNQLASLPAL-------PSELCKLWAYNNQLTS--LP----MLPSGLQELSVSDNQLAS-LPT---  198 (622)
T ss_dssp             ---CCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSC--CC----CCCTTCCEEECCSSCCSC-CCC---
T ss_pred             ---CCCCCCEEECcCCcCCCcCCc-------cCCCCEEECCCCCCCC--Cc----ccCCCCcEEECCCCCCCC-CCC---
Confidence               135555555555555543321       1455555555555532  22    112255555555555543 222   


Q ss_pred             cCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCC
Q 047797          289 HMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL  368 (927)
Q Consensus       289 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~  368 (927)
                      ..++|+.|++++|.++. +|.   .++                              +|+.|++++|.+++..   ..++
T Consensus       199 ~~~~L~~L~L~~N~l~~-l~~---~~~------------------------------~L~~L~Ls~N~L~~lp---~~l~  241 (622)
T 3g06_A          199 LPSELYKLWAYNNRLTS-LPA---LPS------------------------------GLKELIVSGNRLTSLP---VLPS  241 (622)
T ss_dssp             CCTTCCEEECCSSCCSS-CCC---CCT------------------------------TCCEEECCSSCCSCCC---CCCT
T ss_pred             ccchhhEEECcCCcccc-cCC---CCC------------------------------CCCEEEccCCccCcCC---CCCC
Confidence            12445555555555442 221   124                              4444455444444322   2334


Q ss_pred             CCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccC
Q 047797          369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSH  435 (927)
Q Consensus       369 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  435 (927)
                      +|++|++++|.++. +|.   .+++|++|++++|+++ .+|. .+.++++|+.|++++|++++..+.
T Consensus       242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~-~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPE-SLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCG-GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCH-HHhhccccCEEEecCCCCCCcCHH
Confidence            55555555555552 222   3445555555555555 3443 245555555555555555544433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=3.2e-24  Score=250.34  Aligned_cols=262  Identities=26%  Similarity=0.333  Sum_probs=186.5

Q ss_pred             cccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCC
Q 047797          466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKN  545 (927)
Q Consensus       466 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n  545 (927)
                      +++.|++++|.++ .+|..+.   ++|++|++++|.++. +|.   ..++|++|++++|++++ +|..+++|++|++++|
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N  111 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSN  111 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSC
T ss_pred             CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCC
Confidence            4556666666655 3343332   356666666666653 333   34666777777776664 4446677888888888


Q ss_pred             CCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChh
Q 047797          546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTC  625 (927)
Q Consensus       546 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  625 (927)
                      +++++|.   .+++|++|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|+++ .+|  
T Consensus       112 ~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~--  177 (622)
T 3g06_A          112 PLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP--  177 (622)
T ss_dssp             CCCCCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC--
T ss_pred             cCCCCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc--
Confidence            8888776   56778888888888875 4443   3788888888888874 343   3467888888888884 466  


Q ss_pred             hhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccce
Q 047797          626 VGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIY  705 (927)
Q Consensus       626 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  705 (927)
                        ..+++|+.|++++|++++ +|.   .+++|+.|++++|.++. +|..                               
T Consensus       178 --~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~~-------------------------------  219 (622)
T 3g06_A          178 --MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPAL-------------------------------  219 (622)
T ss_dssp             --CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCC-------------------------------
T ss_pred             --ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCCC-------------------------------
Confidence              146788888888888875 343   24678888888888773 3321                               


Q ss_pred             eeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCC
Q 047797          706 YFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS  785 (927)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls  785 (927)
                                            +++|+.|++++|++++ +|   ..+++|+.|+|++|+|++ +|.   .+++|+.|+|+
T Consensus       220 ----------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls  269 (622)
T 3g06_A          220 ----------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVY  269 (622)
T ss_dssp             ----------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred             ----------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCC
Confidence                                  1345889999999987 44   456889999999999985 454   56889999999


Q ss_pred             CCcCcccCCccccCCCCCCeEeCcCCcCcccCCC
Q 047797          786 RNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       786 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      +|+|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus       270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            99998 6788899999999999999999887764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2e-26  Score=249.47  Aligned_cols=216  Identities=23%  Similarity=0.231  Sum_probs=121.2

Q ss_pred             CCceEeCcCCCCCCCC-cccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797          536 NSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR  614 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  614 (927)
                      +|++|++++|++++++ ..+..+++|++|++++|.+++..+  +..+++|++|++++|++++..     ..++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence            4455555555555533 455566666666666666654443  556666666666666665322     23566666666


Q ss_pred             CCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccc
Q 047797          615 KNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLA  694 (927)
Q Consensus       615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  694 (927)
                      +|++.+..+.    .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..                 
T Consensus       108 ~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------  166 (317)
T 3o53_A          108 NNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-----------------  166 (317)
T ss_dssp             SSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG-----------------
T ss_pred             CCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh-----------------
Confidence            6666433221    2455666666666666555555666666666666666666544433320                 


Q ss_pred             cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcccc
Q 047797          695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIG  774 (927)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  774 (927)
                                                      .++.|+.|++++|++++..+  ...+++|++|+|++|++++.. ..+.
T Consensus       167 --------------------------------~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~-~~~~  211 (317)
T 3o53_A          167 --------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQ  211 (317)
T ss_dssp             --------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGG
T ss_pred             --------------------------------ccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcch-hhhc
Confidence                                            12233666666666655422  223566666666666666443 3366


Q ss_pred             CCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797          775 QLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG  815 (927)
Q Consensus       775 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  815 (927)
                      .+++|++|+|++|+++ .+|..+..+++|+.|++++|++.|
T Consensus       212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred             ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence            6666666666666666 345556666666666666666663

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.5e-27  Score=281.24  Aligned_cols=404  Identities=14%  Similarity=0.066  Sum_probs=187.3

Q ss_pred             CCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCC-CCCCCCcchhHh-hcccCccEEEccCCcCcCCcchhhh-
Q 047797          212 QLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDN-HLPSSSVYPWLF-NLSRNILHLDLGFNHLQGSIPEAFQ-  288 (927)
Q Consensus       212 ~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~l~-~~~~~L~~L~Ls~n~i~~~~~~~l~-  288 (927)
                      .+++|++|++++|.+++...  ..+...+++|++|++++| .+++ .....+. .++ +|++|++++|.+++..+..+. 
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCL--ELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCR-NLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHH--HHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGG
T ss_pred             hCCCCCeEEeeCcEEcHHHH--HHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHH
Confidence            44455555555554433222  222211255555555555 2321 1122222 233 566666666555544333332 


Q ss_pred             ---cCCCCCEEEccCCc--CCCc-CcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCC------
Q 047797          289 ---HMVSLRLLSLASNE--LEGG-IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAND------  356 (927)
Q Consensus       289 ---~l~~L~~L~Ls~n~--l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~------  356 (927)
                         .+++|++|++++|.  +... ++..+..+++|++|++++|...+.++..+..++      +|++|+++.+.      
T Consensus       179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~------~L~~L~l~~~~~~~~~~  252 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP------QLEELGTGGYTAEVRPD  252 (594)
T ss_dssp             SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT------TCSEEECSBCCCCCCHH
T ss_pred             HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC------cceEcccccccCccchh
Confidence               44566666666654  1100 111123346666666666532223555555555      56666644332      


Q ss_pred             -CcccCCCCCCCCCCCEE-EccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceeccc
Q 047797          357 -ITGPIPDLGRFLSLKVL-KLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLS  434 (927)
Q Consensus       357 -l~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  434 (927)
                       +.+..+.+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++......+..+++|++|++++| +.... 
T Consensus       253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~-  329 (594)
T 2p1m_B          253 VYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAG-  329 (594)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHH-
T ss_pred             hHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHH-
Confidence             12211224455555555 2322221 2333344455666666666666543332323445666666666655 22111 


Q ss_pred             CCcccccccceeecccccCCCCCChhhhcCccccEEEccC---------CccCCCccchHHhhccccceeecccccccCC
Q 047797          435 HDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISN---------IGISDTIPDWFWDLSIELFFLNLSNNHISGK  505 (927)
Q Consensus       435 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~---------n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  505 (927)
                                            ++.....+++|++|++++         +.+++.....+...+++|++|.++.|.+++.
T Consensus       330 ----------------------l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~  387 (594)
T 2p1m_B          330 ----------------------LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA  387 (594)
T ss_dssp             ----------------------HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH
T ss_pred             ----------------------HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH
Confidence                                  111112233444444421         2222222222222234455554444444332


Q ss_pred             CCCccc-cCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCC------CcccccCCCCCEEEccCccccccCCCcc
Q 047797          506 LPDLSV-LKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL------PDCWLNFNSLSILNLANNRFSGKIPDSM  578 (927)
Q Consensus       506 ~~~~~~-~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~l------p~~~~~l~~L~~L~Ls~n~l~~~~~~~~  578 (927)
                      ....+. .+++|+.++++.+...               .-+.++..      +..+..+++|++|++++ .+++..+..+
T Consensus       388 ~~~~l~~~~~~L~~L~L~~~~~~---------------~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l  451 (594)
T 2p1m_B          388 ALITIARNRPNMTRFRLCIIEPK---------------APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI  451 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESSTT---------------CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred             HHHHHHhhCCCcceeEeecccCC---------------CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence            211111 1222333332210000               00223322      22245677788888866 5555444444


Q ss_pred             cc-cCcccEEEcccccccccCCccc-cCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccc-cCCC
Q 047797          579 GF-LHNIQTLSLRNNRLNGELPSSL-KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQL-CHLA  655 (927)
Q Consensus       579 ~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~  655 (927)
                      .. +++|++|++++|.+++..+..+ ..+++|++|+|++|++++.....+...+++|++|++++|+++......+ ..++
T Consensus       452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp  531 (594)
T 2p1m_B          452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP  531 (594)
T ss_dssp             HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCT
T ss_pred             HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCC
Confidence            44 6778888888887765544444 5677888888888877433333333356778888888777754333333 4556


Q ss_pred             CCCEEEccccc
Q 047797          656 FIQVLDLSLNN  666 (927)
Q Consensus       656 ~L~~L~Ls~N~  666 (927)
                      .|+...+..+.
T Consensus       532 ~l~i~~~~~~~  542 (594)
T 2p1m_B          532 KLNVEVIDERG  542 (594)
T ss_dssp             TEEEEEECSSS
T ss_pred             CCEEEEecCCC
Confidence            66665555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.2e-26  Score=275.31  Aligned_cols=133  Identities=14%  Similarity=0.141  Sum_probs=74.0

Q ss_pred             hcCCCCCEEEccCCcCCCcCccccc-CCCCCcEEeCCCC-CCCCc-hhHHHhhccCCCcCCCccEEEccCCCCcccCC--
Q 047797          288 QHMVSLRLLSLASNELEGGIPKFFG-NMCSLNQLYLPRN-KLSGQ-LSELIQNLSSGCTVNSLEGLCLYANDITGPIP--  362 (927)
Q Consensus       288 ~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~--  362 (927)
                      ..+++|++|++++|.+++..+..+. .+++|++|++++| .++.. ++.....++      +|++|++++|.+++..+  
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~------~L~~L~L~~~~i~~~~~~~  175 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCR------NLKELDLRESDVDDVSGHW  175 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCT------TCCEEECTTCEEECCCGGG
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCC------CCCEEeCcCCccCCcchHH
Confidence            4566666666666666554444443 4666666666666 33322 333334455      66666666666544322  


Q ss_pred             --C-CCCCCCCCEEEccCCc--CCC-cchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCC
Q 047797          363 --D-LGRFLSLKVLKLGENH--LNG-TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN  427 (927)
Q Consensus       363 --~-l~~l~~L~~L~Ls~n~--l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  427 (927)
                        . ...+++|++|++++|.  +.. .++..+..+++|++|++++|...+.++. .+..+++|++|+++.+
T Consensus       176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGY  245 (594)
T ss_dssp             GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBC
T ss_pred             HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccc
Confidence              1 2356677777777775  221 1112234457777777777732223433 4667777777776544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=4.5e-26  Score=246.18  Aligned_cols=244  Identities=23%  Similarity=0.271  Sum_probs=199.9

Q ss_pred             CCCceEeCcCCCCCCCCcccccCCCCCEEEccCcccc-ccCCCccc-------ccCcccEEEcccccccccCCccc--cC
Q 047797          535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFS-GKIPDSMG-------FLHNIQTLSLRNNRLNGELPSSL--KN  604 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~--~~  604 (927)
                      .+|+.+++++|.+ .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|++++|++++.+|..+  ..
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            3578889999999 888876654  999999999994 45666555       68999999999999999999886  89


Q ss_pred             CCCCCEEecCCCcCCCCCChhhhhcC-----ccCcEEEccCcccceecCccccCCCCCCEEEcccccccccc--chhhcc
Q 047797          605 CSKLRVLDLRKNALFGEVPTCVGGSL-----QNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKI--PKCFSN  677 (927)
Q Consensus       605 l~~L~~L~Ls~N~l~~~~p~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~  677 (927)
                      +++|++|++++|++++. |..+. .+     ++|++|++++|++.+..|..+..+++|++|++++|++.+.+  |..+. 
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-  196 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC-  196 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC-
T ss_pred             CCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH-
Confidence            99999999999999776 77666 45     89999999999999988899999999999999999987653  22220 


Q ss_pred             ccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccc---cCccccccccC
Q 047797          678 FSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCE---AIPEEITDLVG  754 (927)
Q Consensus       678 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~---~~p~~~~~l~~  754 (927)
                                                                     +..+++|+.|++++|++++   .....+.++++
T Consensus       197 -----------------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~  229 (312)
T 1wwl_A          197 -----------------------------------------------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQ  229 (312)
T ss_dssp             -----------------------------------------------TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred             -----------------------------------------------hccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence                                                           1224556999999999984   22344568899


Q ss_pred             CCEEecccccccccCC-ccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCC
Q 047797          755 LTALNLSRNNLTGLIP-PKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAG  833 (927)
Q Consensus       755 L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~  833 (927)
                      |++|+|++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++||+++|++++. |....+..+....+.+
T Consensus       230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKG  305 (312)
T ss_dssp             CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTT
T ss_pred             CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccC
Confidence            9999999999999875 56777899999999999999 7888776  8999999999999986 6544455555555666


Q ss_pred             CC
Q 047797          834 NL  835 (927)
Q Consensus       834 n~  835 (927)
                      |+
T Consensus       306 N~  307 (312)
T 1wwl_A          306 NP  307 (312)
T ss_dssp             CT
T ss_pred             CC
Confidence            63

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=6e-24  Score=224.40  Aligned_cols=206  Identities=22%  Similarity=0.301  Sum_probs=142.9

Q ss_pred             CCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEcc
Q 047797          560 LSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLK  639 (927)
Q Consensus       560 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~  639 (927)
                      .+.++++++.++ .+|..+.  +++++|++++|++++..+..|.++++|++|++++|++. .+|...+..+++|++|+++
T Consensus        18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred             CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence            344444444444 2333222  34555555555555444445555555555555555553 3333332245666666666


Q ss_pred             CcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeec
Q 047797          640 SNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKG  719 (927)
Q Consensus       640 ~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  719 (927)
                      +|++++..+..+..+++|++|++++|++++..+..|..++.                                       
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---------------------------------------  134 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK---------------------------------------  134 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT---------------------------------------
T ss_pred             CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC---------------------------------------
Confidence            66666555555666777777777777777665555554443                                       


Q ss_pred             ccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccC
Q 047797          720 SEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSL  799 (927)
Q Consensus       720 ~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  799 (927)
                                 |+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..
T Consensus       135 -----------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          135 -----------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             -----------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             -----------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence                       378888888888777777889999999999999999888888999999999999999999877778999


Q ss_pred             CCCCCeEeCcCCcCcccCCC
Q 047797          800 LSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       800 l~~L~~L~ls~N~l~~~~p~  819 (927)
                      +++|+.|++++|++.|.|+.
T Consensus       204 l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          204 LEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             CTTCCEEECCSSCBCCSSSS
T ss_pred             ccCCCEEEecCCCeeCCCcc
Confidence            99999999999999999874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=8e-25  Score=250.80  Aligned_cols=218  Identities=22%  Similarity=0.219  Sum_probs=187.3

Q ss_pred             CCCCceEeCcCCCCCCC-CcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEe
Q 047797          534 PSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLD  612 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  612 (927)
                      +++|++|++++|.++++ |..+..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            44788999999999985 4688999999999999999997766  8899999999999999986443     38999999


Q ss_pred             cCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhc-cccccccccCCCCcc
Q 047797          613 LRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFS-NFSMMIQEKSSNPII  691 (927)
Q Consensus       613 Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~l~~~~~~~~~~  691 (927)
                      +++|.+.+..+.    .+++|+.|++++|.+++..|..+..+++|++|+|++|.+++.+|..+. .+             
T Consensus       106 L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l-------------  168 (487)
T 3oja_A          106 AANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS-------------  168 (487)
T ss_dssp             CCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT-------------
T ss_pred             CcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC-------------
Confidence            999999655443    468999999999999998898999999999999999999988777664 33             


Q ss_pred             ccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCc
Q 047797          692 GLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPP  771 (927)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  771 (927)
                                                           +.|+.|+|++|.+++..+  +..+++|+.|+|++|++++.+| 
T Consensus       169 -------------------------------------~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-  208 (487)
T 3oja_A          169 -------------------------------------DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-  208 (487)
T ss_dssp             -------------------------------------TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-
T ss_pred             -------------------------------------CcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-
Confidence                                                 345999999999988743  4469999999999999998655 


Q ss_pred             cccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCccc
Q 047797          772 KIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGK  816 (927)
Q Consensus       772 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  816 (927)
                      .+..+++|+.|||++|.+++ +|..+..+++|+.|++++|++.|.
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence            58999999999999999996 788899999999999999999854

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=5e-24  Score=226.04  Aligned_cols=226  Identities=23%  Similarity=0.244  Sum_probs=191.2

Q ss_pred             EeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccccc
Q 047797          519 IDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE  597 (927)
Q Consensus       519 l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  597 (927)
                      ++..+..+.......+.++++|++++|++++++. .+.++++|++|++++|.+++..+..|..+++|++|++++|++++.
T Consensus        12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            3344444444333456789999999999999654 788999999999999999988888999999999999999999998


Q ss_pred             CCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccccee-cCccccCCCCCCEEEccccccccccchhhc
Q 047797          598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN-IPFQLCHLAFIQVLDLSLNNISGKIPKCFS  676 (927)
Q Consensus       598 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  676 (927)
                      .+..|.++++|++|++++|++.+..+..+. .+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+.
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence            889999999999999999999765554555 799999999999999874 689999999999999999999987777776


Q ss_pred             cccccccccCCCCccccccccccccccceeeeecceeEEeeeccccccccccccee-EEEccCCcccccCccccccccCC
Q 047797          677 NFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVK-YLDLSSNKLCEAIPEEITDLVGL  755 (927)
Q Consensus       677 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L  755 (927)
                      .+..+                                               +.+. .|++++|++++..+..+.. .+|
T Consensus       171 ~l~~L-----------------------------------------------~~l~l~L~ls~n~l~~~~~~~~~~-~~L  202 (276)
T 2z62_A          171 VLHQM-----------------------------------------------PLLNLSLDLSLNPMNFIQPGAFKE-IRL  202 (276)
T ss_dssp             HHHTC-----------------------------------------------TTCCEEEECCSSCCCEECTTSSCS-CCE
T ss_pred             hhhhc-----------------------------------------------cccceeeecCCCcccccCccccCC-Ccc
Confidence            65544                                               1122 8999999999877766654 589


Q ss_pred             CEEecccccccccCCccccCCCCCCeEeCCCCcCcccC
Q 047797          756 TALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI  793 (927)
Q Consensus       756 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  793 (927)
                      ++|+|++|++++..+..+..+++|+.|++++|++++..
T Consensus       203 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             EEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             cEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            99999999999887778899999999999999999654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.6e-25  Score=256.68  Aligned_cols=221  Identities=25%  Similarity=0.227  Sum_probs=183.7

Q ss_pred             CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      +++|++|++++|.+++++. +..+++|++|++++|.+++..+     .++|++|++++|.+++..+.   .+++|+.|++
T Consensus        57 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L  127 (487)
T 3oja_A           57 FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYL  127 (487)
T ss_dssp             CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEEC
T ss_pred             CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEEC
Confidence            4567777778888777444 7889999999999999986543     38999999999999977654   4588999999


Q ss_pred             CCCcCCCCCChhhhhcCccCcEEEccCcccceecCcccc-CCCCCCEEEccccccccccchhhccccccccccCCCCccc
Q 047797          614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLC-HLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIG  692 (927)
Q Consensus       614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~  692 (927)
                      ++|.+++..|..+. .+++|++|++++|.+++.+|..+. .+++|++|+|++|.+++..+..                  
T Consensus       128 ~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~------------------  188 (487)
T 3oja_A          128 ANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV------------------  188 (487)
T ss_dssp             CSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC------------------
T ss_pred             CCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc------------------
Confidence            99999877777776 699999999999999998888886 7999999999999998652211                  


Q ss_pred             cccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcc
Q 047797          693 LANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPK  772 (927)
Q Consensus       693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  772 (927)
                                                        .+++|+.|+|++|++++.+| .+..+++|+.|+|++|++++ +|..
T Consensus       189 ----------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~  232 (487)
T 3oja_A          189 ----------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKA  232 (487)
T ss_dssp             ----------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred             ----------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchh
Confidence                                              13456999999999998665 49999999999999999996 5778


Q ss_pred             ccCCCCCCeEeCCCCcCc-ccCCccccCCCCCCeEeCc-------CCcCcccCC
Q 047797          773 IGQLKSLDFLDLSRNHFS-GNIPSSLSLLSGLSVLDLS-------YNSLSGKIP  818 (927)
Q Consensus       773 l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-------~N~l~~~~p  818 (927)
                      +..+++|+.|++++|.+. +.+|..+..++.|+.++++       .|+..|.+|
T Consensus       233 l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~  286 (487)
T 3oja_A          233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP  286 (487)
T ss_dssp             CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred             hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence            999999999999999998 7778888888888888886       555555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.7e-25  Score=242.21  Aligned_cols=266  Identities=19%  Similarity=0.177  Sum_probs=147.0

Q ss_pred             EEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEE
Q 047797          295 LLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLK  374 (927)
Q Consensus       295 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~  374 (927)
                      ..+++.+.+....+..+..+++|++|++++|++++..|..+..++      +|++|++++|.+++..+ +..+++|++|+
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~   86 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------KLELLNLSSNVLYETLD-LESLSTLRTLD   86 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT------TCCEEECTTSCCEEEEE-ETTCTTCCEEE
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC------cCCEEECCCCcCCcchh-hhhcCCCCEEE
Confidence            344444444433334444455566666666655555555555554      55555555554443332 44444444444


Q ss_pred             ccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCC
Q 047797          375 LGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMG  454 (927)
Q Consensus       375 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~  454 (927)
                      +++|.+++..                              ..++|++|++++|+++...+..   +++|++|++++|.+.
T Consensus        87 Ls~n~l~~l~------------------------------~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~  133 (317)
T 3o53_A           87 LNNNYVQELL------------------------------VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKIT  133 (317)
T ss_dssp             CCSSEEEEEE------------------------------ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCC
T ss_pred             CcCCcccccc------------------------------CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCC
Confidence            4444443221                              1244444444444444333222   123444444444444


Q ss_pred             CCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCC
Q 047797          455 PHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLP  534 (927)
Q Consensus       455 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  534 (927)
                      +..+..+..+++|++|++++|.+.+..+..+....++                                           
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~-------------------------------------------  170 (317)
T 3o53_A          134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-------------------------------------------  170 (317)
T ss_dssp             SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-------------------------------------------
T ss_pred             CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc-------------------------------------------
Confidence            3444445555566666666666554444433322223                                           


Q ss_pred             CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797          535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR  614 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  614 (927)
                        |++|++++|+++++|. ...+++|++|++++|.+++. |..+..+++|++|++++|+++ .+|..+..+++|+.|+++
T Consensus       171 --L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          171 --LEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             --CCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred             --CCEEECCCCcCccccc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence              3444444444444322 22367788888888888754 444777888888888888888 456678888888888888


Q ss_pred             CCcCC-CCCChhhhhcCccCcEEEccCc-ccceecCc
Q 047797          615 KNALF-GEVPTCVGGSLQNLIILRLKSN-NFHGNIPF  649 (927)
Q Consensus       615 ~N~l~-~~~p~~~~~~l~~L~~L~L~~n-~l~~~~~~  649 (927)
                      +|++. +.+|.++. .+++|+.++++++ .+.+..|.
T Consensus       246 ~N~~~~~~~~~~~~-~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          246 GNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             TCCCBHHHHHHHHH-TCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCCccCcCHHHHHh-ccccceEEECCCchhccCCchh
Confidence            88886 55666665 6888888888844 44554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.7e-23  Score=222.66  Aligned_cols=208  Identities=24%  Similarity=0.251  Sum_probs=163.7

Q ss_pred             cccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccC
Q 047797          554 WLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNL  633 (927)
Q Consensus       554 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L  633 (927)
                      +.++++++++++++|.++ .+|..+.  ++++.|++++|++++..+..|..+++|++|++++|.+++ ++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcC
Confidence            445666777777777776 3444433  567777777777777667777777777777777777743 3332  257788


Q ss_pred             cEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeeccee
Q 047797          634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNV  713 (927)
Q Consensus       634 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (927)
                      ++|++++|+++ .+|..+..+++|++|++++|++++..|..|.+++.|                                
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------  126 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------  126 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence            88888888877 566777888888899999998887666666665444                                


Q ss_pred             EEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccC
Q 047797          714 LLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI  793 (927)
Q Consensus       714 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  793 (927)
                                        +.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+
T Consensus       127 ------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i  187 (290)
T 1p9a_G          127 ------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (290)
T ss_dssp             ------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ------------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence                              89999999998888888899999999999999999877777899999999999999999 67


Q ss_pred             CccccCCCCCCeEeCcCCcCcccCCC
Q 047797          794 PSSLSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       794 p~~l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      |..+..+++|+.+++++|++.|.|..
T Consensus       188 p~~~~~~~~L~~l~L~~Np~~C~c~~  213 (290)
T 1p9a_G          188 PKGFFGSHLLPFAFLHGNPWLCNCEI  213 (290)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred             ChhhcccccCCeEEeCCCCccCcCcc
Confidence            88888889999999999999998754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=6.1e-23  Score=216.66  Aligned_cols=205  Identities=24%  Similarity=0.299  Sum_probs=168.6

Q ss_pred             CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797          536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK  615 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  615 (927)
                      +.+.+++++++++.+|..+.  +++++|++++|.+++..+..|..+++|++|++++|+++...+..|.++++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            45677788888888776554  5788888888888877777888888888888888888876666778888999999999


Q ss_pred             CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccc
Q 047797          616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLAN  695 (927)
Q Consensus       616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  695 (927)
                      |++.+ +|...+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..++.               
T Consensus        95 n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~---------------  158 (270)
T 2o6q_A           95 NKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS---------------  158 (270)
T ss_dssp             SCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------
T ss_pred             CcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc---------------
Confidence            98854 44333336889999999999998887888889999999999999998666555655444               


Q ss_pred             ccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccC
Q 047797          696 EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQ  775 (927)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  775 (927)
                                                         |+.|++++|++++..+..|.++++|++|+|++|++++..+..+..
T Consensus       159 -----------------------------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          159 -----------------------------------LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             -----------------------------------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             -----------------------------------cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence                                               489999999999988888999999999999999999887778999


Q ss_pred             CCCCCeEeCCCCcCcccC
Q 047797          776 LKSLDFLDLSRNHFSGNI  793 (927)
Q Consensus       776 l~~L~~L~Ls~N~l~~~~  793 (927)
                      +++|+.|+|++|.+...-
T Consensus       204 l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          204 LEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CTTCCEEECCSSCBCCSS
T ss_pred             ccCCCEEEecCCCeeCCC
Confidence            999999999999987543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.5e-23  Score=221.53  Aligned_cols=220  Identities=24%  Similarity=0.251  Sum_probs=166.3

Q ss_pred             ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797          538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA  617 (927)
Q Consensus       538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  617 (927)
                      ..+++.++.+..+ .....+++|+.|++++|.+...  ..+..+++|++|++++|++++.  ..+..+++|++|++++|.
T Consensus        22 ~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~   96 (272)
T 3rfs_A           22 IKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQ   96 (272)
T ss_dssp             HHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSC
T ss_pred             HHHHhcCcccccc-cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCc
Confidence            3445555555553 2345677788888888887632  3477788888888888888753  467788888888888888


Q ss_pred             CCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccc
Q 047797          618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEI  697 (927)
Q Consensus       618 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~  697 (927)
                      +.+..+..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++.                 
T Consensus        97 l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-----------------  158 (272)
T 3rfs_A           97 LQSLPNGVFD-KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN-----------------  158 (272)
T ss_dssp             CCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------------
T ss_pred             cCccChhHhc-CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-----------------
Confidence            8655444444 6888888888888888777777788888888888888888666655555444                 


Q ss_pred             ccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCC
Q 047797          698 LVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK  777 (927)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  777 (927)
                                                       |+.|++++|++++..+..++++++|++|++++|++++..|..+..++
T Consensus       159 ---------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  205 (272)
T 3rfs_A          159 ---------------------------------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT  205 (272)
T ss_dssp             ---------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ---------------------------------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence                                             38888888888887777788888888888888888888777788888


Q ss_pred             CCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC
Q 047797          778 SLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG  820 (927)
Q Consensus       778 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  820 (927)
                      +|+.|++++|.+.+..       +.|++|+++.|.++|.+|..
T Consensus       206 ~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          206 SLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred             CCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence            8889999888887543       46788888888888888863

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=7.1e-23  Score=216.32  Aligned_cols=207  Identities=20%  Similarity=0.196  Sum_probs=179.3

Q ss_pred             CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      +.+++.|++++|.++.++ .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|.++++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            356788888888888775 478899999999999999863  47889999999999999999888888999999999999


Q ss_pred             CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797          614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL  693 (927)
Q Consensus       614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  693 (927)
                      ++|++.+..+..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++.|            
T Consensus       117 ~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------  183 (272)
T 3rfs_A          117 VENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL------------  183 (272)
T ss_dssp             TTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC------------
Confidence            99999765555555 79999999999999998888788999999999999999997777666655444            


Q ss_pred             ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccc
Q 047797          694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI  773 (927)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  773 (927)
                                                            +.|++++|++++.+|..+.++++|+.|++++|.+.+.     
T Consensus       184 --------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-----  220 (272)
T 3rfs_A          184 --------------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-----  220 (272)
T ss_dssp             --------------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-----
T ss_pred             --------------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-----
Confidence                                                  9999999999999888899999999999999998754     


Q ss_pred             cCCCCCCeEeCCCCcCcccCCccccCCC
Q 047797          774 GQLKSLDFLDLSRNHFSGNIPSSLSLLS  801 (927)
Q Consensus       774 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  801 (927)
                        +++|+.|+++.|.++|.+|..++.+.
T Consensus       221 --~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          221 --CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             --TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             --CcHHHHHHHHHHhCCCcccCcccccC
Confidence              45799999999999999999887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=3.5e-22  Score=212.56  Aligned_cols=201  Identities=23%  Similarity=0.197  Sum_probs=171.2

Q ss_pred             CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      .++++++++++++++.+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+.  ..+++|++|++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L   84 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL   84 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred             cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence            3467888888888888887664  6789999999999888888888999999999999998865443  68899999999


Q ss_pred             CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797          614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL  693 (927)
Q Consensus       614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  693 (927)
                      ++|++ ..+|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..++.             
T Consensus        85 s~N~l-~~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-------------  149 (290)
T 1p9a_G           85 SHNQL-QSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-------------  149 (290)
T ss_dssp             CSSCC-SSCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-------------
T ss_pred             CCCcC-CcCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC-------------
Confidence            99999 47777665 6899999999999999887888999999999999999999766666655444             


Q ss_pred             ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccc
Q 047797          694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI  773 (927)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  773 (927)
                                                           |+.|+|++|++++..+..|.++++|+.|+|++|+++ .+|..+
T Consensus       150 -------------------------------------L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          150 -------------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             -------------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             -------------------------------------CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence                                                 499999999999887878899999999999999999 668888


Q ss_pred             cCCCCCCeEeCCCCcCcc
Q 047797          774 GQLKSLDFLDLSRNHFSG  791 (927)
Q Consensus       774 ~~l~~L~~L~Ls~N~l~~  791 (927)
                      ...++|+.|+|++|.+..
T Consensus       192 ~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          192 FGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTTCCCSEEECCSCCBCC
T ss_pred             cccccCCeEEeCCCCccC
Confidence            888999999999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.5e-22  Score=211.17  Aligned_cols=212  Identities=21%  Similarity=0.216  Sum_probs=150.9

Q ss_pred             cccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEc
Q 047797          583 NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDL  662 (927)
Q Consensus       583 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  662 (927)
                      ..++++++++.++ .+|..+.  ++++.|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4556666666665 3444433  4666777777776555554444 5677777777777777666666777888888888


Q ss_pred             cccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCccc
Q 047797          663 SLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLC  742 (927)
Q Consensus       663 s~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  742 (927)
                      ++|++++..+..|..++.                                                  |+.|+|++|+++
T Consensus        91 ~~n~l~~~~~~~~~~l~~--------------------------------------------------L~~L~L~~N~l~  120 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQ--------------------------------------------------LDKLYLGGNQLK  120 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTT--------------------------------------------------CCEEECCSSCCC
T ss_pred             CCCcccccChhHhcccCC--------------------------------------------------CCEEEcCCCcCC
Confidence            888887666555555443                                                  488888888888


Q ss_pred             ccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCc
Q 047797          743 EAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQ  822 (927)
Q Consensus       743 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~  822 (927)
                      +..+..|.++++|++|+|++|++++..+..|+.+++|++|+|++|++++..|..+..+++|++|++++|++.|.++....
T Consensus       121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~  200 (251)
T 3m19_A          121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILY  200 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHH
T ss_pred             CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHH
Confidence            87777889999999999999999988887899999999999999999988888899999999999999999998432211


Q ss_pred             C-CCCcc-----cccCCCCCCCCCCCCCCCCCC
Q 047797          823 L-QSFNA-----SVYAGNLELCGLPLPNKCADE  849 (927)
Q Consensus       823 ~-~~~~~-----~~~~~n~~lc~~~~~~~C~~~  849 (927)
                      + .++..     ....|+ .+|+.|....|...
T Consensus       201 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~  232 (251)
T 3m19_A          201 LSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG  232 (251)
T ss_dssp             HHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred             HHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence            1 11111     112233 46777777788654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=2.2e-22  Score=208.33  Aligned_cols=86  Identities=21%  Similarity=0.333  Sum_probs=41.7

Q ss_pred             CCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCcc-ccccCCCcccccCcccEEEccc-ccccccCCccccCCCCCC
Q 047797          533 LPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNR-FSGKIPDSMGFLHNIQTLSLRN-NRLNGELPSSLKNCSKLR  609 (927)
Q Consensus       533 ~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~  609 (927)
                      .+.++++|++++|+++++|. .+.++++|++|++++|. +++..+..|.++++|++|++++ |++++..+..|.++++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            33445555555555555332 34445555555555553 4444444444555555555554 455444444444445555


Q ss_pred             EEecCCCcC
Q 047797          610 VLDLRKNAL  618 (927)
Q Consensus       610 ~L~Ls~N~l  618 (927)
                      +|++++|++
T Consensus       109 ~L~l~~n~l  117 (239)
T 2xwt_C          109 FLGIFNTGL  117 (239)
T ss_dssp             EEEEEEECC
T ss_pred             EEeCCCCCC
Confidence            555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=6.1e-23  Score=221.45  Aligned_cols=227  Identities=22%  Similarity=0.192  Sum_probs=170.1

Q ss_pred             CCceEeCcCCCCCC--CCc--ccccCCCCCEEEccCccccccCCCcc--cccCcccEEEcccccccccCC----ccccCC
Q 047797          536 NSTFLNLSKNKFSG--LPD--CWLNFNSLSILNLANNRFSGKIPDSM--GFLHNIQTLSLRNNRLNGELP----SSLKNC  605 (927)
Q Consensus       536 ~L~~L~L~~n~l~~--lp~--~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~~l  605 (927)
                      .++.+.+.++.++.  +..  .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|++++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            35566666666644  211  12235678999999999888888877  888899999999998887555    344578


Q ss_pred             CCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCccccee--c--CccccCCCCCCEEEccccccccccchhhcccccc
Q 047797          606 SKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGN--I--PFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMM  681 (927)
Q Consensus       606 ~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l  681 (927)
                      ++|++|++++|++.+..|..+. .+++|++|++++|++.+.  +  +..+..+++|++|++++|+++. ++.....    
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~----  218 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA----  218 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH----
T ss_pred             cCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH----
Confidence            8999999999998666666665 688999999999987653  2  2234678899999999998863 2221000    


Q ss_pred             ccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccc---cCCCEE
Q 047797          682 IQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDL---VGLTAL  758 (927)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l---~~L~~L  758 (927)
                                                                .+..+++|++|||++|++++.+|..+..+   ++|++|
T Consensus       219 ------------------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L  256 (310)
T 4glp_A          219 ------------------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL  256 (310)
T ss_dssp             ------------------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred             ------------------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence                                                      01223456899999999999888888777   699999


Q ss_pred             ecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797          759 NLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG  815 (927)
Q Consensus       759 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  815 (927)
                      +|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|+.|++++|+++.
T Consensus       257 ~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          257 NLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            99999999 5677765  7999999999999964 43 6778999999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.4e-23  Score=231.75  Aligned_cols=237  Identities=22%  Similarity=0.229  Sum_probs=170.1

Q ss_pred             CCCCceEeCcCCCCCCCC-----cccccCC-CCCEEEccCccccccCCCccccc-----CcccEEEcccccccccCCccc
Q 047797          534 PSNSTFLNLSKNKFSGLP-----DCWLNFN-SLSILNLANNRFSGKIPDSMGFL-----HNIQTLSLRNNRLNGELPSSL  602 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp-----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~  602 (927)
                      +.+|++|++++|.+++.+     ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|++++..+..+
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            445777888888877755     5667777 78888888888887766666664     888889998888887666543


Q ss_pred             ----cCC-CCCCEEecCCCcCCCCCChhhhhc----CccCcEEEccCcccceec----CccccCCC-CCCEEEccccccc
Q 047797          603 ----KNC-SKLRVLDLRKNALFGEVPTCVGGS----LQNLIILRLKSNNFHGNI----PFQLCHLA-FIQVLDLSLNNIS  668 (927)
Q Consensus       603 ----~~l-~~L~~L~Ls~N~l~~~~p~~~~~~----l~~L~~L~L~~n~l~~~~----~~~l~~l~-~L~~L~Ls~N~l~  668 (927)
                          ..+ ++|++|++++|++++..+..+...    .++|++|++++|.+++..    +..+..++ +|++|+|++|+++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence                444 788999999998866555444321    358889999998887533    34445555 8899999999888


Q ss_pred             cccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccc-cceeEEEccCCccccc---
Q 047797          669 GKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTL-GFVKYLDLSSNKLCEA---  744 (927)
Q Consensus       669 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~---  744 (927)
                      +..+..+...                                              +... ++|+.|||++|++++.   
T Consensus       181 ~~~~~~l~~~----------------------------------------------l~~~~~~L~~L~Ls~N~i~~~~~~  214 (362)
T 3goz_A          181 SKNCAELAKF----------------------------------------------LASIPASVTSLDLSANLLGLKSYA  214 (362)
T ss_dssp             GSCHHHHHHH----------------------------------------------HHTSCTTCCEEECTTSCGGGSCHH
T ss_pred             hhhHHHHHHH----------------------------------------------HHhCCCCCCEEECCCCCCChhHHH
Confidence            7666555432                                              0112 2568899999988773   


Q ss_pred             -Ccccccc-ccCCCEEecccccccccCC----ccccCCCCCCeEeCCCCcCcccC-------CccccCCCCCCeEeCcCC
Q 047797          745 -IPEEITD-LVGLTALNLSRNNLTGLIP----PKIGQLKSLDFLDLSRNHFSGNI-------PSSLSLLSGLSVLDLSYN  811 (927)
Q Consensus       745 -~p~~~~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~-------p~~l~~l~~L~~L~ls~N  811 (927)
                       ++..+.. .++|++|+|++|++++..+    ..+..+++|++|+|++|.+.+..       +..+..+++|+.||+++|
T Consensus       215 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          215 ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence             4445555 3589999999998887654    33466788999999999855433       335677788889999999


Q ss_pred             cCccc
Q 047797          812 SLSGK  816 (927)
Q Consensus       812 ~l~~~  816 (927)
                      ++.+.
T Consensus       295 ~l~~~  299 (362)
T 3goz_A          295 EIHPS  299 (362)
T ss_dssp             BCCGG
T ss_pred             cCCCc
Confidence            88766

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=9.6e-22  Score=203.50  Aligned_cols=207  Identities=20%  Similarity=0.211  Sum_probs=174.4

Q ss_pred             CCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccc-ccccCCccccCCCCCCEEecCC-CcCCCCCC
Q 047797          546 KFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR-LNGELPSSLKNCSKLRVLDLRK-NALFGEVP  623 (927)
Q Consensus       546 ~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p  623 (927)
                      .++.+|. +.  ++|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++.+..+
T Consensus        22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            3677887 43  489999999999998888899999999999999997 8888888999999999999999 99964444


Q ss_pred             hhhhhcCccCcEEEccCcccceecCccccCCCCCC---EEEcccc-ccccccchhhccccccccccCCCCcccccccccc
Q 047797          624 TCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQ---VLDLSLN-NISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV  699 (927)
Q Consensus       624 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  699 (927)
                      ..+. .+++|++|++++|++++ +|. +..+++|+   +|++++| .+++..+..|.+++.+                  
T Consensus        99 ~~f~-~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------  157 (239)
T 2xwt_C           99 DALK-ELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------  157 (239)
T ss_dssp             TSEE-CCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS------------------
T ss_pred             HHhC-CCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc------------------
Confidence            4454 79999999999999986 665 88888888   9999999 8987666667665544                  


Q ss_pred             ccccceeeeecceeEEeeeccccccccccccee-EEEccCCcccccCccccccccCCCEEeccccc-ccccCCccccCC-
Q 047797          700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVK-YLDLSSNKLCEAIPEEITDLVGLTALNLSRNN-LTGLIPPKIGQL-  776 (927)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-  776 (927)
                                                      + .|++++|+++...+..|.. ++|++|+|++|+ +++..+..|..+ 
T Consensus       158 --------------------------------~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~  204 (239)
T 2xwt_C          158 --------------------------------TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVY  204 (239)
T ss_dssp             --------------------------------EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred             --------------------------------eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccc
Confidence                                            8 9999999998655555655 899999999995 998888889999 


Q ss_pred             CCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCc
Q 047797          777 KSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNS  812 (927)
Q Consensus       777 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  812 (927)
                      ++|+.||+++|++++. |..  .+++|+.|+++++.
T Consensus       205 ~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          205 SGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             BCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             cCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            9999999999999954 443  56789999998874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2.5e-23  Score=232.25  Aligned_cols=234  Identities=19%  Similarity=0.209  Sum_probs=165.8

Q ss_pred             CCCceEeCcCCCCCC-----CCcccccCCCCCEEEccCc---cccccCCCcc-------cccCcccEEEcccccccc---
Q 047797          535 SNSTFLNLSKNKFSG-----LPDCWLNFNSLSILNLANN---RFSGKIPDSM-------GFLHNIQTLSLRNNRLNG---  596 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n---~l~~~~~~~~-------~~l~~L~~L~L~~N~l~~---  596 (927)
                      ++|++|++++|+++.     ++..+..+++|++|++++|   .+.+.+|..+       ..+++|++|+|++|.+++   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            345566666665554     2233556777777777775   3344444443       567788888888888776   


Q ss_pred             -cCCccccCCCCCCEEecCCCcCCCCCChhhhh---cC---------ccCcEEEccCcccc-eecC---ccccCCCCCCE
Q 047797          597 -ELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG---SL---------QNLIILRLKSNNFH-GNIP---FQLCHLAFIQV  659 (927)
Q Consensus       597 -~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~l~~l~~L~~  659 (927)
                       .+|..+..+++|++|+|++|.+.+..+..+..   .+         ++|++|++++|+++ +.++   ..+..+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             45667777888888888888774333333321   22         78888888888876 3344   45667788888


Q ss_pred             EEcccccccc-----ccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEE
Q 047797          660 LDLSLNNISG-----KIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYL  734 (927)
Q Consensus       660 L~Ls~N~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  734 (927)
                      |++++|+++.     ..|..+.                                                  .+++|+.|
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~--------------------------------------------------~~~~L~~L  221 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLA--------------------------------------------------YCQELKVL  221 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGG--------------------------------------------------GCTTCCEE
T ss_pred             EECcCCCCCHhHHHHHHHHHhh--------------------------------------------------cCCCccEE
Confidence            8888887762     1221222                                                  34556899


Q ss_pred             EccCCccc----ccCccccccccCCCEEeccccccccc----CCccc--cCCCCCCeEeCCCCcCcc----cCCccc-cC
Q 047797          735 DLSSNKLC----EAIPEEITDLVGLTALNLSRNNLTGL----IPPKI--GQLKSLDFLDLSRNHFSG----NIPSSL-SL  799 (927)
Q Consensus       735 dLs~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~  799 (927)
                      +|++|+++    +.+|..+..+++|++|+|++|++++.    +|..+  +.+++|++|+|++|++++    .+|..+ .+
T Consensus       222 ~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~  301 (386)
T 2ca6_A          222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK  301 (386)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred             ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc
Confidence            99999996    66788889999999999999999876    56666  348999999999999997    477777 66


Q ss_pred             CCCCCeEeCcCCcCcccCC
Q 047797          800 LSGLSVLDLSYNSLSGKIP  818 (927)
Q Consensus       800 l~~L~~L~ls~N~l~~~~p  818 (927)
                      +++|++|++++|++++..|
T Consensus       302 l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          302 MPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCEEECTTSBSCTTSH
T ss_pred             CCCceEEEccCCcCCcchh
Confidence            8999999999999997764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=7.3e-23  Score=224.07  Aligned_cols=230  Identities=20%  Similarity=0.195  Sum_probs=179.4

Q ss_pred             CCCceEeCcCCCCCCCCcccccCCCCCEEEccCcccccc-CCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGK-IPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      .+++.|++++|.+.+.+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            467778888888877555567789999999999998865 7777888999999999999998888888889999999999


Q ss_pred             CCC-cCCCC-CChhhhhcCccCcEEEccCc-cccee-cCccccCCC-CCCEEEcccc--ccc-cccchhhcccccccccc
Q 047797          614 RKN-ALFGE-VPTCVGGSLQNLIILRLKSN-NFHGN-IPFQLCHLA-FIQVLDLSLN--NIS-GKIPKCFSNFSMMIQEK  685 (927)
Q Consensus       614 s~N-~l~~~-~p~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~l~~~~  685 (927)
                      ++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+.+        
T Consensus       150 ~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--------  220 (336)
T 2ast_B          150 SGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--------  220 (336)
T ss_dssp             TTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--------
T ss_pred             CCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--------
Confidence            999 56542 455454 6899999999999 88764 577788899 9999999999  454 334444443        


Q ss_pred             CCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCc-ccccCccccccccCCCEEeccccc
Q 047797          686 SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNK-LCEAIPEEITDLVGLTALNLSRNN  764 (927)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~~~~p~~~~~l~~L~~L~Ls~N~  764 (927)
                                                                +++|+.|++++|. +++..+..+.++++|++|++++|.
T Consensus       221 ------------------------------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          221 ------------------------------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             ------------------------------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             ------------------------------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence                                                      3455999999999 787888889999999999999995


Q ss_pred             -ccccCCccccCCCCCCeEeCCCCcCcccCCccccCC-CCCCeEeCcCCcCcccCCC
Q 047797          765 -LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLL-SGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       765 -l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~  819 (927)
                       ++......++++++|+.|++++| ++.   ..+..+ ..+..|++++|++++..|.
T Consensus       259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          259 DIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             TCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             CCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence             33222236788999999999999 332   234444 3477888999999988775

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5.2e-21  Score=205.71  Aligned_cols=123  Identities=25%  Similarity=0.323  Sum_probs=57.8

Q ss_pred             CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797          536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK  615 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  615 (927)
                      +|++|++++|.++.+| .+..+++|++|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|++|++++
T Consensus        42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTS  116 (308)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTT
T ss_pred             CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCC
Confidence            4455555555555544 34455555555555555553322  45555555555555555432  2344555555555555


Q ss_pred             CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797          616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS  668 (927)
Q Consensus       616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  668 (927)
                      |++.+ ++. +. .+++|++|++++|.+++..+  +..+++|++|++++|+++
T Consensus       117 n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          117 TQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             SCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             CCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence            55432 222 22 34444444444444443222  444444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=6.1e-22  Score=213.59  Aligned_cols=204  Identities=22%  Similarity=0.197  Sum_probs=156.4

Q ss_pred             CCceEeCcCCCCCC-CCccc--ccCCCCCEEEccCccccccCC----CcccccCcccEEEcccccccccCCccccCCCCC
Q 047797          536 NSTFLNLSKNKFSG-LPDCW--LNFNSLSILNLANNRFSGKIP----DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKL  608 (927)
Q Consensus       536 ~L~~L~L~~n~l~~-lp~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  608 (927)
                      +|++|++++|++++ .|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..+..|..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            46777777777776 56666  778888888999888886554    234568889999999999988888888889999


Q ss_pred             CEEecCCCcCCCC--CC-hhhhhcCccCcEEEccCcccceec--Cc-cccCCCCCCEEEccccccccccchhhccccccc
Q 047797          609 RVLDLRKNALFGE--VP-TCVGGSLQNLIILRLKSNNFHGNI--PF-QLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMI  682 (927)
Q Consensus       609 ~~L~Ls~N~l~~~--~p-~~~~~~l~~L~~L~L~~n~l~~~~--~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~  682 (927)
                      ++|++++|++.+.  ++ ......+++|++|++++|+++...  +. .+..+++|++|+|++|++++..|..+..+..  
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~--  249 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW--  249 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC--
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC--
Confidence            9999999987542  11 222226888999999999986321  12 2467899999999999999887776655421  


Q ss_pred             cccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccc
Q 047797          683 QEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSR  762 (927)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~  762 (927)
                                                                   +++|++|+|++|+++ .+|..+.  ++|++|+|++
T Consensus       250 ---------------------------------------------~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~  281 (310)
T 4glp_A          250 ---------------------------------------------SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSS  281 (310)
T ss_dssp             ---------------------------------------------CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCS
T ss_pred             ---------------------------------------------cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCC
Confidence                                                         235689999999998 5676664  7999999999


Q ss_pred             ccccccCCccccCCCCCCeEeCCCCcCcc
Q 047797          763 NNLTGLIPPKIGQLKSLDFLDLSRNHFSG  791 (927)
Q Consensus       763 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  791 (927)
                      |++++. |. +..+++|+.|+|++|+++.
T Consensus       282 N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          282 NRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            999975 33 7888999999999999974

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=3.5e-21  Score=207.02  Aligned_cols=206  Identities=26%  Similarity=0.422  Sum_probs=172.1

Q ss_pred             CcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCC
Q 047797          542 LSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGE  621 (927)
Q Consensus       542 L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  621 (927)
                      +..+.++++ .....+++|++|++++|.+.. ++ .+..+++|++|++++|++++..+  +..+++|++|++++|++.+ 
T Consensus        26 l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-   99 (308)
T 1h6u_A           26 AGKSNVTDT-VTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-   99 (308)
T ss_dssp             TTCSSTTSE-ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-
T ss_pred             hCCCCcCce-ecHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-
Confidence            334444442 124567899999999999985 44 68899999999999999996554  9999999999999999954 


Q ss_pred             CChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccccc
Q 047797          622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVP  701 (927)
Q Consensus       622 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  701 (927)
                      ++ .+. .+++|++|++++|++++. + .+..+++|++|++++|++++..+  +..                        
T Consensus       100 ~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~------------------------  149 (308)
T 1h6u_A          100 VS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG------------------------  149 (308)
T ss_dssp             CG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG------------------------
T ss_pred             ch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC------------------------
Confidence            55 454 699999999999999864 3 38999999999999999986543  433                        


Q ss_pred             ccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCe
Q 047797          702 GYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDF  781 (927)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  781 (927)
                                                +++|+.|++++|++++..+  +.++++|+.|++++|++++..+  +..+++|++
T Consensus       150 --------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~  199 (308)
T 1h6u_A          150 --------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIE  199 (308)
T ss_dssp             --------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred             --------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCE
Confidence                                      3455999999999988655  8999999999999999997643  899999999


Q ss_pred             EeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797          782 LDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG  815 (927)
Q Consensus       782 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  815 (927)
                      |++++|++++..|  +..+++|++|++++|++++
T Consensus       200 L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          200 VHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             EECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             EEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            9999999997653  8899999999999999986

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.85  E-value=5.2e-22  Score=219.16  Aligned_cols=141  Identities=21%  Similarity=0.188  Sum_probs=93.8

Q ss_pred             CCceEeCcCCCCCC-----CCcccccCC-CCCEEEccCccccccCCCccc----cc-CcccEEEccccccccc----CCc
Q 047797          536 NSTFLNLSKNKFSG-----LPDCWLNFN-SLSILNLANNRFSGKIPDSMG----FL-HNIQTLSLRNNRLNGE----LPS  600 (927)
Q Consensus       536 ~L~~L~L~~n~l~~-----lp~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~----~~~  600 (927)
                      +|++|++++|++++     ++..+..++ +|++|++++|.+++..+..+.    .+ ++|++|++++|.+++.    ++.
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~  218 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY  218 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence            34445555555442     233444454 788888888888766554433    33 5888888888888753    344


Q ss_pred             cccC-CCCCCEEecCCCcCCCCCChhh---hhcCccCcEEEccCccccee-------cCccccCCCCCCEEEcccccccc
Q 047797          601 SLKN-CSKLRVLDLRKNALFGEVPTCV---GGSLQNLIILRLKSNNFHGN-------IPFQLCHLAFIQVLDLSLNNISG  669 (927)
Q Consensus       601 ~~~~-l~~L~~L~Ls~N~l~~~~p~~~---~~~l~~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~Ls~N~l~~  669 (927)
                      .+.. .++|++|+|++|++.+..+..+   ...+++|++|++++|.+.+.       ++..+..+++|+.||+++|++.+
T Consensus       219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            4544 4589999999998865544222   23568899999999985433       33467788999999999999987


Q ss_pred             ccchhhc
Q 047797          670 KIPKCFS  676 (927)
Q Consensus       670 ~~p~~~~  676 (927)
                      ..+..+.
T Consensus       299 ~~~~~~~  305 (362)
T 3goz_A          299 SHSIPIS  305 (362)
T ss_dssp             GGCHHHH
T ss_pred             cchHHHH
Confidence            7665544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.3e-20  Score=196.40  Aligned_cols=159  Identities=23%  Similarity=0.254  Sum_probs=101.5

Q ss_pred             cccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEc
Q 047797          583 NIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDL  662 (927)
Q Consensus       583 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  662 (927)
                      +++.|++++|++++..+..|.++++|++|++++|++.+..|..+. .+++|++|++++|++++..+..+..+++|++|++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            444444444444444444444455555555555555433333333 4555555555555555444555566666777777


Q ss_pred             cccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCccc
Q 047797          663 SLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLC  742 (927)
Q Consensus       663 s~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~  742 (927)
                      ++|++++..+..|..++.                                                  |+.|+|++|+++
T Consensus       115 ~~N~l~~~~~~~~~~l~~--------------------------------------------------L~~L~Ls~N~l~  144 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTK--------------------------------------------------LKELRLNTNQLQ  144 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTT--------------------------------------------------CCEEECCSSCCC
T ss_pred             CCCcCCCcChhHhccCCc--------------------------------------------------ccEEECcCCcCC
Confidence            777766554444444333                                                  377778888777


Q ss_pred             ccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCccc
Q 047797          743 EAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN  792 (927)
Q Consensus       743 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  792 (927)
                      +..+..|+++++|++|+|++|++++..+..+..+++|+.|+|++|++++.
T Consensus       145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            77777788888888888888888888777888888888999998888865

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=2.2e-20  Score=204.99  Aligned_cols=242  Identities=19%  Similarity=0.183  Sum_probs=184.8

Q ss_pred             cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCC-CcccccCcccE-EEccccc
Q 047797          517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIP-DSMGFLHNIQT-LSLRNNR  593 (927)
Q Consensus       517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~-L~L~~N~  593 (927)
                      ++++.++++++......+.++++|+|++|+|+.+|. +|.++++|++|+|++|++.+.+| .+|.++++++. +.+++|+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            456667777765444457789999999999999875 68999999999999999876555 57888988775 6677899


Q ss_pred             ccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccC-cccceecCccccCCC-CCCEEEcccccccccc
Q 047797          594 LNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS-NNFHGNIPFQLCHLA-FIQVLDLSLNNISGKI  671 (927)
Q Consensus       594 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~  671 (927)
                      ++...|..|..+++|++|++++|++.+..+..+. ...++..|++.+ +++....+..+..+. .++.|++++|+|+...
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            9988899999999999999999999654444443 566788898866 567766666677665 6899999999998544


Q ss_pred             chhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccC-CcccccCccccc
Q 047797          672 PKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSS-NKLCEAIPEEIT  750 (927)
Q Consensus       672 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~-N~l~~~~p~~~~  750 (927)
                      +..|..                                                   ..++.|++++ |.++.+.+..|.
T Consensus       171 ~~~f~~---------------------------------------------------~~L~~l~l~~~n~l~~i~~~~f~  199 (350)
T 4ay9_X          171 NSAFNG---------------------------------------------------TQLDELNLSDNNNLEELPNDVFH  199 (350)
T ss_dssp             TTSSTT---------------------------------------------------EEEEEEECTTCTTCCCCCTTTTT
T ss_pred             hhhccc---------------------------------------------------cchhHHhhccCCcccCCCHHHhc
Confidence            443322                                                   2348899975 677666667789


Q ss_pred             cccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797          751 DLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS  814 (927)
Q Consensus       751 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  814 (927)
                      ++++|++|||++|+|+...+..+.   +|+.|.+.++.--..+| .+..+++|+.++++++.-.
T Consensus       200 ~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~c  259 (350)
T 4ay9_X          200 GASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHC  259 (350)
T ss_dssp             TEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHHH
T ss_pred             cCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCCccc
Confidence            999999999999999977555555   45555555544444677 4888999999999876433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=8.1e-21  Score=207.75  Aligned_cols=253  Identities=19%  Similarity=0.213  Sum_probs=154.4

Q ss_pred             CccEEEcCCCCCCCCCcchhHhhc-ccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCc-CcccccCCCCCcE
Q 047797          242 SIETLDLSDNHLPSSSVYPWLFNL-SRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGG-IPKFFGNMCSLNQ  319 (927)
Q Consensus       242 ~L~~L~Ls~n~l~~~~~~~~l~~~-~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~  319 (927)
                      .++.++++++.+.    +..+... .++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3555666655542    2233333 12666666666666655444 34566666666666666543 5555666666666


Q ss_pred             EeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCC-CCccc-CCC-CCCCCCCCEEEccCC-cCCCc-chhhhhccC-C
Q 047797          320 LYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAN-DITGP-IPD-LGRFLSLKVLKLGEN-HLNGT-INKSLSHLF-K  393 (927)
Q Consensus       320 L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n-~l~~~-~~~-l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~-~  393 (927)
                      |++++|.+++..+..++.++      +|++|++++| .+++. .+. +..+++|++|++++| .+++. ++..+..++ +
T Consensus       123 L~L~~~~l~~~~~~~l~~~~------~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNS------NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCT------TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             EeCcCcccCHHHHHHHhcCC------CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            66666666666666665555      6666666666 45432 333 556667777777777 66643 455666777 7


Q ss_pred             CCEEecCCc--ccc-cccChhhhhcCCCCCEEEccCCc-ceecccCCcccccccceeeccccc-CCCCCChhhhcCcccc
Q 047797          394 LETLSLDGN--SFT-GVISETFFSNMSNLQMLFLADNS-LTLKLSHDWVPAFQLKWLSLASCK-MGPHFPNWLQTQNQLI  468 (927)
Q Consensus       394 L~~L~L~~n--~l~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~L~  468 (927)
                      |++|++++|  .++ +.++. .+..+++|++|++++|. ++......+..+++|++|++++|. +.......+..+++|+
T Consensus       197 L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  275 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  275 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence            777777777  343 23333 45667777777777777 555555566666777777777774 2212223577888999


Q ss_pred             EEEccCCccCCCccchHHhhccccceeecccccccCCCCCcc
Q 047797          469 SLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLS  510 (927)
Q Consensus       469 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  510 (927)
                      +|++++| ++..   .+......+..|++++|++++..|...
T Consensus       276 ~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          276 TLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             EEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             EEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcc
Confidence            9999988 4332   222222457888888888888777653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=8.3e-21  Score=193.10  Aligned_cols=164  Identities=23%  Similarity=0.232  Sum_probs=136.6

Q ss_pred             CEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecC-ccccCCCCCCEEEccccccccccchhhccccccccccCC
Q 047797          609 RVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP-FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSS  687 (927)
Q Consensus       609 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  687 (927)
                      +.+++++|.+ +.+|..+   .+.+++|++++|++++..+ ..+..+++|++|++++|++++..+..|.+++.|      
T Consensus        14 ~~l~~s~n~l-~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKL-NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCc-ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            4677777777 4566544   3456788888888887654 457888889999999998887766667665444      


Q ss_pred             CCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccc
Q 047797          688 NPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG  767 (927)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  767 (927)
                                                                  ++|+|++|++++..+..|.++++|++|+|++|++++
T Consensus        84 --------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  119 (220)
T 2v70_A           84 --------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC  119 (220)
T ss_dssp             --------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC
T ss_pred             --------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe
Confidence                                                        899999999999888889999999999999999999


Q ss_pred             cCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCC
Q 047797          768 LIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSF  826 (927)
Q Consensus       768 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~  826 (927)
                      ..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++.|.|+......++
T Consensus       120 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~  178 (220)
T 2v70_A          120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWL  178 (220)
T ss_dssp             BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHH
T ss_pred             ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999865443333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=2.5e-20  Score=189.53  Aligned_cols=159  Identities=25%  Similarity=0.312  Sum_probs=135.3

Q ss_pred             CEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCC
Q 047797          609 RVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSN  688 (927)
Q Consensus       609 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~  688 (927)
                      +.++++++.+ ..+|..+   .++++.|++++|++++..+..+..+++|++|+|++|++++..|..|.+++.|       
T Consensus        14 ~~v~c~~~~l-~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGL-TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCC-SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCc-CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            4667777776 4566543   2578888888888887777788888899999999999887777777765544       


Q ss_pred             CccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccccccccc
Q 047797          689 PIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL  768 (927)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  768 (927)
                                                                 ++|+|++|+|++..+..|.++++|++|+|++|++++.
T Consensus        83 -------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~  119 (220)
T 2v9t_B           83 -------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL  119 (220)
T ss_dssp             -------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             -------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence                                                       8999999999887777889999999999999999999


Q ss_pred             CCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCC
Q 047797          769 IPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGT  821 (927)
Q Consensus       769 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~  821 (927)
                      .|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.|.|+..+
T Consensus       120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~  172 (220)
T 2v9t_B          120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKW  172 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred             CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence            99999999999999999999998888889999999999999999999887543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=9.5e-21  Score=211.28  Aligned_cols=232  Identities=20%  Similarity=0.282  Sum_probs=135.5

Q ss_pred             cCccEEEcCCCCCCCCCcchh----HhhcccCccEEEccCCc---CcCCcchhh-------hcCCCCCEEEccCCcCCC-
Q 047797          241 TSIETLDLSDNHLPSSSVYPW----LFNLSRNILHLDLGFNH---LQGSIPEAF-------QHMVSLRLLSLASNELEG-  305 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~----l~~~~~~L~~L~Ls~n~---i~~~~~~~l-------~~l~~L~~L~Ls~n~l~~-  305 (927)
                      ++|++|+|++|.+++ ..+..    +..+. +|++|++++|.   +++.+|..+       ..+++|++|+|++|.+.. 
T Consensus        32 ~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGT-EAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             SCCCEEECTTSEECH-HHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             CCccEEECCCCCCCH-HHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            777888888777754 33322    22344 77777777753   334445444       567777777777777775 


Q ss_pred             ---cCcccccCCCCCcEEeCCCCCCCCchhHHHhhc-------------cCCCcCCCccEEEccCCCCc-ccCC---C-C
Q 047797          306 ---GIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNL-------------SSGCTVNSLEGLCLYANDIT-GPIP---D-L  364 (927)
Q Consensus       306 ---~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-------------~~~~~~~~L~~L~L~~n~l~-~~~~---~-l  364 (927)
                         .+|..+..+++|++|++++|.++...+..+...             +      +|++|++++|.++ +..+   . +
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~------~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP------PLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------CCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC------CCcEEECCCCCCCcHHHHHHHHHH
Confidence               356667777777777777777765444433332             4      6777777777665 2333   1 4


Q ss_pred             CCCCCCCEEEccCCcCCC-----cchhhhhccCCCCEEecCCcccc----cccChhhhhcCCCCCEEEccCCcceecc--
Q 047797          365 GRFLSLKVLKLGENHLNG-----TINKSLSHLFKLETLSLDGNSFT----GVISETFFSNMSNLQMLFLADNSLTLKL--  433 (927)
Q Consensus       365 ~~l~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~--  433 (927)
                      ..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    +.+|. .+..+++|++|++++|.++...  
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHH
Confidence            456667777777776652     23335666667777777777664    33444 3566666777777776665431  


Q ss_pred             --cCCc--ccccccceeecccccCCC----CCChhh-hcCccccEEEccCCccCCCc
Q 047797          434 --SHDW--VPAFQLKWLSLASCKMGP----HFPNWL-QTQNQLISLDISNIGISDTI  481 (927)
Q Consensus       434 --~~~~--~~~~~L~~L~L~~~~~~~----~~~~~l-~~~~~L~~L~Ls~n~l~~~~  481 (927)
                        +..+  ..+++|++|++++|.+..    .+|..+ .++++|++|++++|.+++..
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence              2222  124455555555555544    244444 33455555555555555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.8e-19  Score=181.95  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=62.6

Q ss_pred             ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797          538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA  617 (927)
Q Consensus       538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  617 (927)
                      +.++.+++.++.+|..+  .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            34555555565555433  2356666666666655444445555556666666555554444445555555555555555


Q ss_pred             CCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797          618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS  668 (927)
Q Consensus       618 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  668 (927)
                      +++..+..+. .+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus        88 l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           88 LQSLPNGVFD-KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCccCHhHhc-CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            5322222222 3444444444444444333333344444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1e-19  Score=209.52  Aligned_cols=43  Identities=30%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             CEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccC
Q 047797          756 TALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSL  799 (927)
Q Consensus       756 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  799 (927)
                      +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            44555555554 23444444555555555555555544444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.2e-19  Score=206.79  Aligned_cols=182  Identities=26%  Similarity=0.367  Sum_probs=132.4

Q ss_pred             CCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEc
Q 047797          559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRL  638 (927)
Q Consensus       559 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L  638 (927)
                      +|+.|++++|.+++ +|..+.  ++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +. .  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEEC
Confidence            56666666666664 444432  56777777777766 445   345677777777777754 665 43 2  7777778


Q ss_pred             cCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeee
Q 047797          639 KSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWK  718 (927)
Q Consensus       639 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (927)
                      ++|++++ +|.   .+++|+.|++++|.+++ +|.   .                                         
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~-----------------------------------------  158 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L-----------------------------------------  158 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------------------------------------
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------------------------------------
Confidence            7777776 454   57788888888888875 443   1                                         


Q ss_pred             cccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCC-------CeEeCCCCcCcc
Q 047797          719 GSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL-------DFLDLSRNHFSG  791 (927)
Q Consensus       719 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~  791 (927)
                               +++|+.|+|++|++++ +|. |.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ 
T Consensus       159 ---------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-  220 (571)
T 3cvr_A          159 ---------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-  220 (571)
T ss_dssp             ---------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred             ---------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence                     2244888889998887 565 65  88999999999998 5566 654  77       99999999999 


Q ss_pred             cCCccccCCCCCCeEeCcCCcCcccCCC
Q 047797          792 NIPSSLSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       792 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      .+|..+..+++|++|++++|++++.+|.
T Consensus       221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          221 HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            5888888899999999999999998774

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=3.8e-19  Score=195.10  Aligned_cols=235  Identities=19%  Similarity=0.131  Sum_probs=171.1

Q ss_pred             ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCC-ccccCCCCCCE-EecCC
Q 047797          538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP-SSLKNCSKLRV-LDLRK  615 (927)
Q Consensus       538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~-L~Ls~  615 (927)
                      ++++.++++++.+|..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +++++
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            56788888999988766  3578899999999987666778889999999999998866554 56788888765 55667


Q ss_pred             CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccc-cccccccchhhccccccccccCCCCccccc
Q 047797          616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSL-NNISGKIPKCFSNFSMMIQEKSSNPIIGLA  694 (927)
Q Consensus       616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  694 (927)
                      |++.+..|..+. .+++|++|++++|++.+..+..+....++..+++++ |++....+..|..+.               
T Consensus        90 N~l~~l~~~~f~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~---------------  153 (350)
T 4ay9_X           90 NNLLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS---------------  153 (350)
T ss_dssp             TTCCEECTTSBC-CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred             CcccccCchhhh-hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc---------------
Confidence            888544455444 688888888888888876666666777788888866 455533333343322               


Q ss_pred             cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccc-ccccccCCccc
Q 047797          695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSR-NNLTGLIPPKI  773 (927)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l  773 (927)
                                                        ..++.|+|++|+|+.+.+..| ...+|++|++++ |.++.+.++.|
T Consensus       154 ----------------------------------~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f  198 (350)
T 4ay9_X          154 ----------------------------------FESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVF  198 (350)
T ss_dssp             ----------------------------------SSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTT
T ss_pred             ----------------------------------hhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHh
Confidence                                              235899999999987555544 567899999985 66775555678


Q ss_pred             cCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcc
Q 047797          774 GQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNA  828 (927)
Q Consensus       774 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~  828 (927)
                      .++++|++|||++|+|+...+..|   .+|+.|.+.+++--..+|.-..+..+..
T Consensus       199 ~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~  250 (350)
T 4ay9_X          199 HGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALME  250 (350)
T ss_dssp             TTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCE
T ss_pred             ccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhh
Confidence            999999999999999996544444   4566777666655567776444555543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.79  E-value=7.2e-19  Score=177.54  Aligned_cols=152  Identities=22%  Similarity=0.250  Sum_probs=126.7

Q ss_pred             cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccc
Q 047797          517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN  595 (927)
Q Consensus       517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  595 (927)
                      +.++.+++.++......++++++|++++|++++++. .+..+++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence            345666666665555557789999999999999664 5678999999999999999777777899999999999999999


Q ss_pred             ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc
Q 047797          596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG  669 (927)
Q Consensus       596 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  669 (927)
                      +..+..|..+++|++|++++|++.+..+..+. .+++|++|++++|++++..+..+..+++|++|++++|++.+
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             ccCHhHhcCccCCCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            87777789999999999999999654444444 79999999999999997777778888999999998887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=3.8e-19  Score=195.91  Aligned_cols=162  Identities=26%  Similarity=0.234  Sum_probs=107.8

Q ss_pred             CCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCC
Q 047797          608 LRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSS  687 (927)
Q Consensus       608 L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  687 (927)
                      ++.|+|++|++++..+..+...+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.+++.       
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------  113 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA-------  113 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-------
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC-------
Confidence            4555555555533222222113556666666666666555556666777777777777776555545544433       


Q ss_pred             CCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccc
Q 047797          688 NPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG  767 (927)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  767 (927)
                                                                 |+.|+|++|+|++..|..|.++++|+.|+|++|+|++
T Consensus       114 -------------------------------------------L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A          114 -------------------------------------------LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             -------------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             -------------------------------------------CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence                                                       3777777777777777778888888888888888886


Q ss_pred             cCCccc---cCCCCCCeEeCCCCcCcccCCccccCCCC--CCeEeCcCCcCcccCCC
Q 047797          768 LIPPKI---GQLKSLDFLDLSRNHFSGNIPSSLSLLSG--LSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       768 ~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~l~~~~p~  819 (927)
                      ..+..|   ..+++|+.|||++|+|++..+..+..++.  ++.|++++|++.|.|..
T Consensus       151 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence            555555   56888888888888888666667777776  48899999999888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.5e-18  Score=177.68  Aligned_cols=157  Identities=25%  Similarity=0.243  Sum_probs=130.8

Q ss_pred             CCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCC
Q 047797          608 LRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSS  687 (927)
Q Consensus       608 L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  687 (927)
                      -+.++.+++.+ +.+|..+   .++|++|++++|.+++..|..+..+++|++|+|++|++++..+..|..++.       
T Consensus        21 ~~~v~c~~~~l-~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~-------   89 (229)
T 3e6j_A           21 GTTVDCRSKRH-ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-------   89 (229)
T ss_dssp             TTEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred             CCEeEccCCCc-CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-------
Confidence            45677777776 5666543   367888888888888777788888888888888888887555555555444       


Q ss_pred             CCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccc
Q 047797          688 NPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG  767 (927)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  767 (927)
                                                                 |+.|+|++|++++..+..|..+++|++|+|++|+++ 
T Consensus        90 -------------------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-  125 (229)
T 3e6j_A           90 -------------------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-  125 (229)
T ss_dssp             -------------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             -------------------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-
Confidence                                                       489999999998888888899999999999999999 


Q ss_pred             cCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCC
Q 047797          768 LIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       768 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      .+|..+..+++|++|+|++|++++..+..|..+++|++|++++|++.|.|+.
T Consensus       126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            6788999999999999999999988778899999999999999999999873

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=3.9e-18  Score=181.49  Aligned_cols=171  Identities=26%  Similarity=0.342  Sum_probs=100.6

Q ss_pred             ccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCE
Q 047797          580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQV  659 (927)
Q Consensus       580 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  659 (927)
                      .+++|+.|++++|.+... + .+..+++|++|++++|++.+ ++. +. .+++|++|++++|.+++ + ..+..+++|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~  116 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENKVKD-L-SSLKDLKKLKS  116 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred             hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cc-cCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence            344455555555544422 2 24445555555555555533 222 22 45555555555555543 2 23556666666


Q ss_pred             EEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCC
Q 047797          660 LDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN  739 (927)
Q Consensus       660 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  739 (927)
                      |++++|++++.  ..+..                                                  +++|+.|++++|
T Consensus       117 L~L~~n~i~~~--~~l~~--------------------------------------------------l~~L~~L~l~~n  144 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVH--------------------------------------------------LPQLESLYLGNN  144 (291)
T ss_dssp             EECTTSCCCCC--GGGGG--------------------------------------------------CTTCCEEECCSS
T ss_pred             EECCCCcCCCC--hhhcC--------------------------------------------------CCCCCEEEccCC
Confidence            66666666542  12222                                                  233467777777


Q ss_pred             cccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcc
Q 047797          740 KLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSG  815 (927)
Q Consensus       740 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  815 (927)
                      ++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++++. | .+..+++|+.|++++|++++
T Consensus       145 ~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          145 KITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            77664  456777777777777777776544  77777777777777777753 3 37777777778877777765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=4.9e-18  Score=172.61  Aligned_cols=157  Identities=22%  Similarity=0.228  Sum_probs=121.5

Q ss_pred             cEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccc
Q 047797          585 QTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSL  664 (927)
Q Consensus       585 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~  664 (927)
                      +.+++++|.++. +|..+.  +.+++|++++|++++..|...+..+++|++|++++|++++..+..+.++++|++|+|++
T Consensus        14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            456666666653 444332  34567777777775544433333677888888888888877777888888899999999


Q ss_pred             cccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCccccc
Q 047797          665 NNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEA  744 (927)
Q Consensus       665 N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~  744 (927)
                      |++++..+..|.+++.|                                                  ++|+|++|++++.
T Consensus        91 N~l~~~~~~~~~~l~~L--------------------------------------------------~~L~Ls~N~l~~~  120 (220)
T 2v70_A           91 NRLENVQHKMFKGLESL--------------------------------------------------KTLMLRSNRITCV  120 (220)
T ss_dssp             SCCCCCCGGGGTTCSSC--------------------------------------------------CEEECTTSCCCCB
T ss_pred             CccCccCHhHhcCCcCC--------------------------------------------------CEEECCCCcCCeE
Confidence            98887777666655444                                                  8999999999998


Q ss_pred             CccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCC
Q 047797          745 IPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIP  794 (927)
Q Consensus       745 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  794 (927)
                      .|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|.+.+..+
T Consensus       121 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            89999999999999999999999989999999999999999999986544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.7e-18  Score=184.17  Aligned_cols=186  Identities=27%  Similarity=0.363  Sum_probs=135.7

Q ss_pred             EeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCC
Q 047797          540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF  619 (927)
Q Consensus       540 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  619 (927)
                      +.+..+.++++. .+..+++|++|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|++.
T Consensus        29 ~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  103 (291)
T 1h6t_A           29 DNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK  103 (291)
T ss_dssp             HHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HHhcCCCccccc-chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence            344444554421 234567778888888877643 3 46777888888888888876544  777888888888888874


Q ss_pred             CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccc
Q 047797          620 GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV  699 (927)
Q Consensus       620 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  699 (927)
                      + +|. +. .+++|++|++++|++++.  ..+..+++|+.|++++|++++.  ..+..                      
T Consensus       104 ~-~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~----------------------  154 (291)
T 1h6t_A          104 D-LSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR----------------------  154 (291)
T ss_dssp             C-GGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG----------------------
T ss_pred             C-Chh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc----------------------
Confidence            3 443 44 678888888888888754  4577888888888888888754  23333                      


Q ss_pred             ccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCC
Q 047797          700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL  779 (927)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  779 (927)
                                                  +++|+.|++++|++++..|  +..+++|++|++++|++++.  +.+..+++|
T Consensus       155 ----------------------------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L  202 (291)
T 1h6t_A          155 ----------------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNL  202 (291)
T ss_dssp             ----------------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTC
T ss_pred             ----------------------------CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCC
Confidence                                        3445888999998887665  88899999999999999875  358889999


Q ss_pred             CeEeCCCCcCcc
Q 047797          780 DFLDLSRNHFSG  791 (927)
Q Consensus       780 ~~L~Ls~N~l~~  791 (927)
                      +.|++++|+++.
T Consensus       203 ~~L~l~~n~i~~  214 (291)
T 1h6t_A          203 DVLELFSQECLN  214 (291)
T ss_dssp             SEEEEEEEEEEC
T ss_pred             CEEECcCCcccC
Confidence            999999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=1.4e-18  Score=172.48  Aligned_cols=113  Identities=23%  Similarity=0.323  Sum_probs=94.6

Q ss_pred             ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797          730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS  809 (927)
Q Consensus       730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  809 (927)
                      +|++|+|++|++++.+|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..+..+++|++|+++
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  134 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence            44888888888888888899999999999999999999988889999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCCcCCCCcccccCCCCCCCCCCC
Q 047797          810 YNSLSGKIPLGTQLQSFNASVYAGNLELCGLPL  842 (927)
Q Consensus       810 ~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~  842 (927)
                      +|++.|.|+......++....+.++...|+.|.
T Consensus       135 ~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          135 SNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             CCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            999999988654444444444555655666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.2e-17  Score=194.73  Aligned_cols=171  Identities=22%  Similarity=0.282  Sum_probs=126.1

Q ss_pred             CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      +..|+.|++++|.+..+| .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+. | .+..+++|++|+|
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEEC
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEe
Confidence            346777788888877776 47778888888888888876544  77888888888888888752 3 5778888888888


Q ss_pred             CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797          614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL  693 (927)
Q Consensus       614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  693 (927)
                      ++|++.+ ++ .+. .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..++              
T Consensus       117 s~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~--------------  175 (605)
T 1m9s_A          117 EHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT--------------  175 (605)
T ss_dssp             TTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT--------------
T ss_pred             cCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC--------------
Confidence            8888854 43 344 578888888888888764  567778888888888888876554  44333              


Q ss_pred             ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEeccccccccc
Q 047797          694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL  768 (927)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  768 (927)
                                                          +|+.|+|++|+|++.  ..+..+++|+.|+|++|++++.
T Consensus       176 ------------------------------------~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          176 ------------------------------------KLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ------------------------------------TCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             ------------------------------------CCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence                                                347888888888764  3577788888888888887765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=9.1e-18  Score=195.79  Aligned_cols=191  Identities=26%  Similarity=0.346  Sum_probs=147.5

Q ss_pred             CceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCC
Q 047797          537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN  616 (927)
Q Consensus       537 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  616 (927)
                      +..+.+..+.+..+. .+..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..|  +..+++|+.|+|++|
T Consensus        23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            344556666666632 245778899999999998743 3 58888999999999999986655  888999999999999


Q ss_pred             cCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccc
Q 047797          617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANE  696 (927)
Q Consensus       617 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~  696 (927)
                      ++.+ +| .+. .+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++++.  ..+..                   
T Consensus        98 ~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~-------------------  151 (605)
T 1m9s_A           98 KIKD-LS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR-------------------  151 (605)
T ss_dssp             CCCC-CT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGS-------------------
T ss_pred             CCCC-Ch-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcc-------------------
Confidence            8854 44 444 688899999999988863  4578888999999999888754  23333                   


Q ss_pred             cccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCC
Q 047797          697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQL  776 (927)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  776 (927)
                                                     +++|+.|+|++|++++.+|  +..+++|+.|+|++|+|++.  +.+..+
T Consensus       152 -------------------------------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l  196 (605)
T 1m9s_A          152 -------------------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGL  196 (605)
T ss_dssp             -------------------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTC
T ss_pred             -------------------------------cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccC
Confidence                                           3445888899998888766  88888899999999988875  468888


Q ss_pred             CCCCeEeCCCCcCcccC
Q 047797          777 KSLDFLDLSRNHFSGNI  793 (927)
Q Consensus       777 ~~L~~L~Ls~N~l~~~~  793 (927)
                      ++|+.|+|++|++++..
T Consensus       197 ~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          197 KNLDVLELFSQECLNKP  213 (605)
T ss_dssp             TTCSEEECCSEEEECCC
T ss_pred             CCCCEEEccCCcCcCCc
Confidence            88889999988887653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.2e-17  Score=183.87  Aligned_cols=130  Identities=28%  Similarity=0.256  Sum_probs=82.9

Q ss_pred             ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCccc-ccCcccEEEcccccccccCCccccCCCCCCEEecCCC
Q 047797          538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMG-FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN  616 (927)
Q Consensus       538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  616 (927)
                      +.+++++++++.+|..+.  +.++.|+|++|++++..+..|. .+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            456666666666665443  3466677777776666665565 6667777777777776666666666677777777777


Q ss_pred             cCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccc
Q 047797          617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGK  670 (927)
Q Consensus       617 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~  670 (927)
                      ++.+..+..+. .+++|++|+|++|++++..|..+..+++|++|+|++|++++.
T Consensus        99 ~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A           99 HLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             cCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence            66433333333 566677777777766666666666667777777777766643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=7.4e-18  Score=176.34  Aligned_cols=171  Identities=21%  Similarity=0.264  Sum_probs=127.0

Q ss_pred             ccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCE
Q 047797          580 FLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQV  659 (927)
Q Consensus       580 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  659 (927)
                      .+.++..+++++|.+++..  .+..+++|++|++++|.+ ..+| .+. .+++|++|++++|++++..+  +..+++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i-~~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNI-QSLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCC-CCCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCc-ccch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            3556666777777776443  466777777777777777 3455 344 57788888888888775544  778888888


Q ss_pred             EEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCC
Q 047797          660 LDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSN  739 (927)
Q Consensus       660 L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N  739 (927)
                      |++++|++++. |... .                                                   +.|+.|++++|
T Consensus        90 L~L~~N~l~~l-~~~~-~---------------------------------------------------~~L~~L~L~~N  116 (263)
T 1xeu_A           90 LSVNRNRLKNL-NGIP-S---------------------------------------------------ACLSRLFLDNN  116 (263)
T ss_dssp             EECCSSCCSCC-TTCC-C---------------------------------------------------SSCCEEECCSS
T ss_pred             EECCCCccCCc-Cccc-c---------------------------------------------------CcccEEEccCC
Confidence            88888887742 2110 0                                                   24588888888


Q ss_pred             cccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCccc
Q 047797          740 KLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGK  816 (927)
Q Consensus       740 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  816 (927)
                      ++++. + .+.++++|++|+|++|++++.  +.+..+++|+.|++++|++++.  ..+..+++|++|++++|++++.
T Consensus       117 ~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          117 ELRDT-D-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCSBS-G-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ccCCC-h-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            88774 3 588889999999999998876  3688889999999999999876  6688888999999999988876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=4.5e-20  Score=214.07  Aligned_cols=190  Identities=24%  Similarity=0.240  Sum_probs=116.0

Q ss_pred             cCCCCCEEEccCccccccCCCcccccCcccEEEccccc-------------ccccCCccccCCCCCCEEe-cCCCcCCCC
Q 047797          556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNR-------------LNGELPSSLKNCSKLRVLD-LRKNALFGE  621 (927)
Q Consensus       556 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------l~~~~~~~~~~l~~L~~L~-Ls~N~l~~~  621 (927)
                      .+++|+.|+|++|.++ .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+   
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~---  422 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL---  422 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence            3455666666666665 445556666666666665543             3344555555555666555 444322   


Q ss_pred             CChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccccc
Q 047797          622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVP  701 (927)
Q Consensus       622 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  701 (927)
                               ..|+.+.+++|.++...+      ..|+.|+|++|.+++ +|. +++++.                     
T Consensus       423 ---------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~---------------------  464 (567)
T 1dce_A          423 ---------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLL---------------------  464 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTT---------------------
T ss_pred             ---------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-cccccc---------------------
Confidence                     233334444555543221      136777777777764 443 444333                     


Q ss_pred             ccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCe
Q 047797          702 GYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDF  781 (927)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  781 (927)
                                                   |+.|+|++|+|+ .+|..|+++++|+.|+|++|+|++ +| .++++++|+.
T Consensus       465 -----------------------------L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~  512 (567)
T 1dce_A          465 -----------------------------VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQE  512 (567)
T ss_dssp             -----------------------------CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred             -----------------------------CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcE
Confidence                                         377777777776 566677777777777777777775 45 6777777777


Q ss_pred             EeCCCCcCcccC-CccccCCCCCCeEeCcCCcCcccCCC
Q 047797          782 LDLSRNHFSGNI-PSSLSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       782 L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      |+|++|++++.+ |..+..+++|++|++++|++++..|.
T Consensus       513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            777777777665 77777777777777777777766553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=8.2e-17  Score=163.50  Aligned_cols=152  Identities=22%  Similarity=0.279  Sum_probs=134.3

Q ss_pred             cEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCC-cccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccc
Q 047797          517 IVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLN  595 (927)
Q Consensus       517 ~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  595 (927)
                      +.++++++.++......+.+++.|++++|+++++| ..|..+++|++|+|++|.+++..|..|.++++|++|+|++|+++
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence            45666677666554455678999999999999965 47889999999999999999998999999999999999999999


Q ss_pred             ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc
Q 047797          596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG  669 (927)
Q Consensus       596 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  669 (927)
                      ...+..|.++++|++|+|++|++.+..|..+. .+++|++|+|++|++++..+..+..+++|++|++++|++..
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            77777789999999999999999777777776 79999999999999998888889999999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=9.6e-20  Score=211.28  Aligned_cols=202  Identities=19%  Similarity=0.231  Sum_probs=169.8

Q ss_pred             CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCcc-------------ccccCCCcccccCcccEEE-cccccccccCC
Q 047797          534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNR-------------FSGKIPDSMGFLHNIQTLS-LRNNRLNGELP  599 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~  599 (927)
                      .+.|+.|++++|+++.+|..++++++|+.|++++|.             ..+..|..++.+++|+.|+ ++.|.+.    
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~----  423 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD----  423 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH----
T ss_pred             CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc----
Confidence            568999999999999999999999999999998875             5667778889999999999 7877654    


Q ss_pred             ccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhcccc
Q 047797          600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFS  679 (927)
Q Consensus       600 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  679 (927)
                             +|+.+.+++|.+. .+|      ...|+.|++++|.+++ +|. +..+++|+.|+|++|+++ .+|..+++++
T Consensus       424 -------~L~~l~l~~n~i~-~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  486 (567)
T 1dce_A          424 -------DLRSKFLLENSVL-KME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR  486 (567)
T ss_dssp             -------HHHHHHHHHHHHH-HHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             -------hhhhhhhhccccc-ccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence                   3455666777662 122      2358999999999986 565 899999999999999998 7788777665


Q ss_pred             ccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEe
Q 047797          680 MMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALN  759 (927)
Q Consensus       680 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~  759 (927)
                      .|                                                  +.|+|++|+|++ +| .++++++|++|+
T Consensus       487 ~L--------------------------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~  514 (567)
T 1dce_A          487 CL--------------------------------------------------EVLQASDNALEN-VD-GVANLPRLQELL  514 (567)
T ss_dssp             TC--------------------------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred             CC--------------------------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence            55                                                  999999999998 66 899999999999


Q ss_pred             cccccccccC-CccccCCCCCCeEeCCCCcCcccCCcc---ccCCCCCCeEeC
Q 047797          760 LSRNNLTGLI-PPKIGQLKSLDFLDLSRNHFSGNIPSS---LSLLSGLSVLDL  808 (927)
Q Consensus       760 Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~l  808 (927)
                      |++|+|++.+ |..++.+++|+.|+|++|++++..|..   +..+++|+.||+
T Consensus       515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999987 999999999999999999999876643   344789999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=4.5e-17  Score=162.60  Aligned_cols=80  Identities=21%  Similarity=0.286  Sum_probs=49.5

Q ss_pred             eEEEccCCcccccCccccccccCCCEEeccccc-ccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcC
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNN-LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY  810 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  810 (927)
                      +.|++++|++++..|..++++++|++|++++|+ ++. +| .+..+++|++|++++|++++ ++ .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence            666666666666566666666677777777776 443 33 56667777777777777764 33 566677777777777


Q ss_pred             CcCcc
Q 047797          811 NSLSG  815 (927)
Q Consensus       811 N~l~~  815 (927)
                      |++.+
T Consensus       191 N~i~~  195 (197)
T 4ezg_A          191 QTIGG  195 (197)
T ss_dssp             C----
T ss_pred             cccCC
Confidence            76543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=2.2e-16  Score=161.49  Aligned_cols=155  Identities=21%  Similarity=0.214  Sum_probs=135.6

Q ss_pred             CcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCC-CcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccc
Q 047797          516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGL-PDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL  594 (927)
Q Consensus       516 l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  594 (927)
                      .+.++.+++.+.......+++|++|++++|+++++ |..+..+++|++|+|++|.++...+..|..+++|++|+|++|++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            34566666666655555678999999999999994 77889999999999999999877777889999999999999999


Q ss_pred             cccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccc
Q 047797          595 NGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP  672 (927)
Q Consensus       595 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  672 (927)
                      ++..+..|..+++|++|++++|++. .+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            9888888999999999999999995 8888886 79999999999999998777889999999999999999986543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=8.4e-17  Score=160.59  Aligned_cols=154  Identities=18%  Similarity=0.268  Sum_probs=107.9

Q ss_pred             cccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCC
Q 047797          579 GFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQ  658 (927)
Q Consensus       579 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  658 (927)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.+. .+ ..+. .+++|++|++++|++++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            45566677777777666 344 4666777777777777552 22 2444 577777777777777776777777888888


Q ss_pred             EEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccC
Q 047797          659 VLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSS  738 (927)
Q Consensus       659 ~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~  738 (927)
                      +|++++|++++..|..+..++.|                                                  +.|++++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L--------------------------------------------------~~L~L~~  145 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKV--------------------------------------------------NSIDLSY  145 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSC--------------------------------------------------CEEECCS
T ss_pred             EEEecCCccCcHhHHHHhhCCCC--------------------------------------------------CEEEccC
Confidence            88888888877666666554443                                                  7888888


Q ss_pred             Cc-ccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcc
Q 047797          739 NK-LCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG  791 (927)
Q Consensus       739 N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  791 (927)
                      |+ ++. +| .+.++++|++|++++|++++. + .+..+++|++|++++|++.+
T Consensus       146 n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          146 NGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             CCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            87 544 44 578888888999999888864 3 68888889999999888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=5.6e-17  Score=160.95  Aligned_cols=155  Identities=25%  Similarity=0.294  Sum_probs=114.3

Q ss_pred             CEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCc-cccCCCCCCEEEccccccccccchhhccccccccccCC
Q 047797          609 RVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPF-QLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSS  687 (927)
Q Consensus       609 ~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~  687 (927)
                      +++++++|.+ +.+|..+.   .++++|++++|++++..+. .+..+++|++|+|++|++++..|..|.+++.|      
T Consensus        11 ~~l~~s~~~l-~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCC-SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCc-CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            5667777766 55665443   3677777777777765554 37778888888888888887777777665544      


Q ss_pred             CCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccc
Q 047797          688 NPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG  767 (927)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  767 (927)
                                                                  +.|+|++|++++..|..|.++++|++|+|++|++++
T Consensus        81 --------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  116 (192)
T 1w8a_A           81 --------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             --------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             --------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe
Confidence                                                        888888888888888888899999999999999999


Q ss_pred             cCCccccCCCCCCeEeCCCCcCcccCCcc-ccCCCCCCeEeCcCCcCcccCCC
Q 047797          768 LIPPKIGQLKSLDFLDLSRNHFSGNIPSS-LSLLSGLSVLDLSYNSLSGKIPL  819 (927)
Q Consensus       768 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~  819 (927)
                      .+|..+..+++|++|+|++|.+++..+.. +.  ..++...+..+...|.-|.
T Consensus       117 ~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             ECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST
T ss_pred             eCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCCh
Confidence            99999999999999999999998765422 11  1123334555666666664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.1e-17  Score=172.88  Aligned_cols=122  Identities=25%  Similarity=0.358  Sum_probs=67.2

Q ss_pred             CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797          536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK  615 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  615 (927)
                      ++..++++++.+++++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|++++
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            3445566666666654 45566666666666666653 33 45666666666666666664433  56666666666666


Q ss_pred             CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797          616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS  668 (927)
Q Consensus       616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  668 (927)
                      |++.+ +|...  . ++|++|++++|++++.  ..+..+++|++|++++|+++
T Consensus        95 N~l~~-l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           95 NRLKN-LNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             SCCSC-CTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred             CccCC-cCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence            66633 33211  1 4555555555555532  23445555555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=4e-17  Score=161.92  Aligned_cols=135  Identities=26%  Similarity=0.322  Sum_probs=108.6

Q ss_pred             cEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeeccee
Q 047797          634 IILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNV  713 (927)
Q Consensus       634 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (927)
                      +++++++|.++ .+|..+.  ++|++|++++|+++ .+|..|.+++.                                 
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~---------------------------------   55 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKH---------------------------------   55 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTT---------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccC---------------------------------
Confidence            45666666665 3444332  46777888888876 45555555443                                 


Q ss_pred             EEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccC
Q 047797          714 LLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI  793 (927)
Q Consensus       714 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  793 (927)
                                       |+.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..
T Consensus        56 -----------------L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  118 (193)
T 2wfh_A           56 -----------------LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP  118 (193)
T ss_dssp             -----------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             -----------------CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence                             488888888888888888999999999999999999998889999999999999999999877


Q ss_pred             CccccCCCCCCeEeCcCCcCcccCCCCCc
Q 047797          794 PSSLSLLSGLSVLDLSYNSLSGKIPLGTQ  822 (927)
Q Consensus       794 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~  822 (927)
                      +..|..+++|++|++++|++.|.|+..+.
T Consensus       119 ~~~~~~l~~L~~L~L~~N~~~C~c~l~~l  147 (193)
T 2wfh_A          119 EGAFNDLSALSHLAIGANPLYCDCNMQWL  147 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred             hhhhhcCccccEEEeCCCCeecCCcCHHH
Confidence            77899999999999999999999875443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.5e-17  Score=199.27  Aligned_cols=191  Identities=24%  Similarity=0.271  Sum_probs=111.9

Q ss_pred             EeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCC
Q 047797          540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF  619 (927)
Q Consensus       540 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  619 (927)
                      ++++.|.+...|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+
T Consensus       206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            44555555555667778888888888888887 56666678888888888888888 77888888888888888888886


Q ss_pred             CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccc
Q 047797          620 GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV  699 (927)
Q Consensus       620 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  699 (927)
                       .+|..+. .+++|++|+|++|.++ .+|..|..+++|++|+|++|++++.+|..+..+...                  
T Consensus       284 -~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~------------------  342 (727)
T 4b8c_D          284 -SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT------------------  342 (727)
T ss_dssp             -SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH------------------
T ss_pred             -ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh------------------
Confidence             7787776 6888888888888886 667778888889999999999888888777654322                  


Q ss_pred             ccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccc--------cccccCCc
Q 047797          700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRN--------NLTGLIPP  771 (927)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~  771 (927)
                                                     ...++|++|.+++.+|..      |+.|++++|        .+.+..+.
T Consensus       343 -------------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~  385 (727)
T 4b8c_D          343 -------------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEH  385 (727)
T ss_dssp             -------------------------------HHHHHHHHCCCCCCCCCC-------------------------------
T ss_pred             -------------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccc
Confidence                                           023667778887777653      345556665        44444444


Q ss_pred             cccCCCCCCeEeCCCCcCc
Q 047797          772 KIGQLKSLDFLDLSRNHFS  790 (927)
Q Consensus       772 ~l~~l~~L~~L~Ls~N~l~  790 (927)
                      .+..+..++...+++|-+.
T Consensus       386 ~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          386 LATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ----------------CCC
T ss_pred             hhhcccccceeeeeccccc
Confidence            5555566666666666664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.5e-17  Score=199.07  Aligned_cols=221  Identities=20%  Similarity=0.217  Sum_probs=125.2

Q ss_pred             CCceEeCcCCCCCCCCcccccCCCCC-----EEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCE
Q 047797          536 NSTFLNLSKNKFSGLPDCWLNFNSLS-----ILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRV  610 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~~l~~L~-----~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  610 (927)
                      .++.|++.+|.+..++..+.....|.     .++++.|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|++
T Consensus       174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR  251 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSC
T ss_pred             ccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCE
Confidence            35566666666666554332222222     2333444444 55778999999999999999998 67777779999999


Q ss_pred             EecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCc
Q 047797          611 LDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPI  690 (927)
Q Consensus       611 L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~  690 (927)
                      |+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..+..+++|++|+|++|.|+ .+|..|++++.|         
T Consensus       252 L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L---------  318 (727)
T 4b8c_D          252 LYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL---------  318 (727)
T ss_dssp             CBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC---------
T ss_pred             EEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc---------
Confidence            999999996 8998886 7999999999999999 77999999999999999999997 677777765555         


Q ss_pred             cccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccC-CCEEecccccccccC
Q 047797          691 IGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVG-LTALNLSRNNLTGLI  769 (927)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~  769 (927)
                                                               +.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+
T Consensus       319 -----------------------------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~  357 (727)
T 4b8c_D          319 -----------------------------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL  357 (727)
T ss_dssp             -----------------------------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred             -----------------------------------------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence                                                     99999999999999988866532 234889999999988


Q ss_pred             CccccCCCCCCeEeCCCC--------cCcccCCccccCCCCCCeEeCcCCcCcccCC
Q 047797          770 PPKIGQLKSLDFLDLSRN--------HFSGNIPSSLSLLSGLSVLDLSYNSLSGKIP  818 (927)
Q Consensus       770 p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  818 (927)
                      |..      |+.|++++|        .+.+..+..+..+..+....+++|-+.+...
T Consensus       358 p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          358 PHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             CCC-----------------------------------------------CCCGGGC
T ss_pred             ccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence            864      556777777        4555555566777778888899998875443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=3.6e-16  Score=169.83  Aligned_cols=74  Identities=11%  Similarity=0.014  Sum_probs=53.3

Q ss_pred             eEEEccCCcccccCccccccccCCC-EEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEe
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLT-ALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLD  807 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  807 (927)
                      +.|+|++| ++.+.+..|.++++|+ .+++.+ +++.+.+.+|.++++|+.+++++|+++...+..|.++++|+.++
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            67777776 6666666777777777 777776 66666667777777777777777777766666777777777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.2e-15  Score=165.59  Aligned_cols=261  Identities=13%  Similarity=0.088  Sum_probs=138.9

Q ss_pred             CccEEEccCCCCc--ccCCCCCCCCCCCEEEccCCcCCCcchhhhhc--------cCCCCEEecCCcccccccChhhhhc
Q 047797          346 SLEGLCLYANDIT--GPIPDLGRFLSLKVLKLGENHLNGTINKSLSH--------LFKLETLSLDGNSFTGVISETFFSN  415 (927)
Q Consensus       346 ~L~~L~L~~n~l~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~~~~~~~~  415 (927)
                      +|+.|+|++|++.  ...+.  .++.++.+.+..|.+   .+..|.+        +++|++|++.+ .++ .++...|.+
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~--~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~  122 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAG--TYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKG  122 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSS--SSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTT
T ss_pred             cCeEEecCcceeEEecCccc--ccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhc
Confidence            5666666666555  21111  222234444444432   2334555        77788877777 665 566667777


Q ss_pred             CCCCCEEEccCCcceecccCCcccccccceeeccccc----CCCCCChhhhcCcccc-EEEccCCccCCCccchHHhhcc
Q 047797          416 MSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCK----MGPHFPNWLQTQNQLI-SLDISNIGISDTIPDWFWDLSI  490 (927)
Q Consensus       416 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~----~~~~~~~~l~~~~~L~-~L~Ls~n~l~~~~~~~~~~~~~  490 (927)
                      +++|+.+++.+|.+..+.+..|..+.++..+......    ........|.++..|+ .+.+...   +.++..++....
T Consensus       123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~  199 (329)
T 3sb4_A          123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGL  199 (329)
T ss_dssp             CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTC
T ss_pred             CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhccc
Confidence            7888888887777777777777766666665554421    1222233455555555 4444332   123332222110


Q ss_pred             ccceeecccccccCCCCCccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCccc-ccCCCCCEEEccCcc
Q 047797          491 ELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCW-LNFNSLSILNLANNR  569 (927)
Q Consensus       491 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~  569 (927)
                                           ..                     .+++.+.+.++-...-...+ ..+++|+.+++++|+
T Consensus       200 ---------------------~~---------------------~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~  237 (329)
T 3sb4_A          200 ---------------------QP---------------------RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN  237 (329)
T ss_dssp             ---------------------CG---------------------GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred             ---------------------Cc---------------------cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC
Confidence                                 00                     11112222111000000011 125666666666666


Q ss_pred             ccccCCCcccccCcccEEEcccccccccCCccccCCCCCC-EEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecC
Q 047797          570 FSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLR-VLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP  648 (927)
Q Consensus       570 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~  648 (927)
                      ++.+.+.+|.++++|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ .+ ..++...+..+++|+.+++++|+++...+
T Consensus       238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l-~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV-TAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC-CEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc-eEEchhhhhCCccCCEEEeCCCccCccch
Confidence            66555556666666777776666 5556666666666676 666666 44 33433333356666666666666666666


Q ss_pred             ccccCCCCCCEEE
Q 047797          649 FQLCHLAFIQVLD  661 (927)
Q Consensus       649 ~~l~~l~~L~~L~  661 (927)
                      ..|.++++|+.+.
T Consensus       315 ~aF~~~~~L~~ly  327 (329)
T 3sb4_A          315 ELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTCTTCCCCEEE
T ss_pred             hhhcCCcchhhhc
Confidence            6666666666664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=2.4e-15  Score=147.22  Aligned_cols=89  Identities=25%  Similarity=0.238  Sum_probs=78.4

Q ss_pred             eeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcC
Q 047797          731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY  810 (927)
Q Consensus       731 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  810 (927)
                      |++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            37888888888877777788999999999999999988888889999999999999999977777788899999999999


Q ss_pred             CcCcccCCC
Q 047797          811 NSLSGKIPL  819 (927)
Q Consensus       811 N~l~~~~p~  819 (927)
                      |++.|.+|.
T Consensus       134 N~~~~~~~~  142 (177)
T 2o6r_A          134 NPWDCSCPR  142 (177)
T ss_dssp             SCBCCCHHH
T ss_pred             CCeeccCcc
Confidence            999998873

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=3e-15  Score=145.19  Aligned_cols=82  Identities=30%  Similarity=0.297  Sum_probs=36.0

Q ss_pred             eEEEccCCcccccCccccccccCCCEEecccccccccC-CccccCCCCCCeEeCCCCcCcccCC---ccccCCCCCCeEe
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLI-PPKIGQLKSLDFLDLSRNHFSGNIP---SSLSLLSGLSVLD  807 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~  807 (927)
                      +.|++++|++++.+|..+.++++|++|+|++|++++.. +..+..+++|++|++++|++++..+   ..+..+++|++|+
T Consensus        74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred             CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence            34444444443333333444444444444444444321 1344444444444444444443332   2444445555555


Q ss_pred             CcCCcC
Q 047797          808 LSYNSL  813 (927)
Q Consensus       808 ls~N~l  813 (927)
                      +++|.+
T Consensus       154 l~~n~~  159 (168)
T 2ell_A          154 GYDRED  159 (168)
T ss_dssp             TEETTS
T ss_pred             CCCCCh
Confidence            555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=1.9e-15  Score=146.62  Aligned_cols=138  Identities=25%  Similarity=0.249  Sum_probs=119.5

Q ss_pred             CCCCCEEecCCCcCC-CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhcccccccc
Q 047797          605 CSKLRVLDLRKNALF-GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ  683 (927)
Q Consensus       605 l~~L~~L~Ls~N~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~  683 (927)
                      .++|++|++++|.+. +.+|..+. .+++|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+.+++.|  
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL--   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC--
T ss_pred             cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC--
Confidence            478999999999997 68888765 799999999999999876  788999999999999999998777766655444  


Q ss_pred             ccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccC-ccccccccCCCEEeccc
Q 047797          684 EKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAI-PEEITDLVGLTALNLSR  762 (927)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~-p~~~~~l~~L~~L~Ls~  762 (927)
                                                                      +.|++++|++++.. +..+.++++|++|++++
T Consensus        98 ------------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~  129 (168)
T 2ell_A           98 ------------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFN  129 (168)
T ss_dssp             ------------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred             ------------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence                                                            99999999998853 37899999999999999


Q ss_pred             ccccccCC---ccccCCCCCCeEeCCCCcCcccCCcc
Q 047797          763 NNLTGLIP---PKIGQLKSLDFLDLSRNHFSGNIPSS  796 (927)
Q Consensus       763 N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~~  796 (927)
                      |.+++..+   ..+..+++|++||+++|.+. .+|..
T Consensus       130 N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          130 CEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             SGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             CcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            99997765   58999999999999999997 45544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2e-15  Score=143.19  Aligned_cols=79  Identities=29%  Similarity=0.323  Sum_probs=50.5

Q ss_pred             eeEEEccCCcccccCccccccccCCCEEeccccccccc-CCccccCCCCCCeEeCCCCcCcccCC---ccccCCCCCCeE
Q 047797          731 VKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGL-IPPKIGQLKSLDFLDLSRNHFSGNIP---SSLSLLSGLSVL  806 (927)
Q Consensus       731 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L  806 (927)
                      |+.|++++|++++.+|..+.++++|++|++++|++++. .|..++.+++|++|++++|++++..+   ..+..+++|++|
T Consensus        66 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           66 LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred             CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence            36666666666665666666666666666666666653 23566666777777777777665544   356666777777


Q ss_pred             eCc
Q 047797          807 DLS  809 (927)
Q Consensus       807 ~ls  809 (927)
                      |++
T Consensus       146 ~l~  148 (149)
T 2je0_A          146 DGY  148 (149)
T ss_dssp             TTB
T ss_pred             cCC
Confidence            665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.54  E-value=5.8e-15  Score=143.05  Aligned_cols=90  Identities=24%  Similarity=0.228  Sum_probs=83.8

Q ss_pred             ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797          730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS  809 (927)
Q Consensus       730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  809 (927)
                      .++.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            34899999999999999999999999999999999998888889999999999999999998888889999999999999


Q ss_pred             CCcCcccCCC
Q 047797          810 YNSLSGKIPL  819 (927)
Q Consensus       810 ~N~l~~~~p~  819 (927)
                      +|++.|.++.
T Consensus       111 ~N~~~c~c~~  120 (170)
T 3g39_A          111 NNPWDCACSD  120 (170)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCCCCCchh
Confidence            9999999873

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=4.9e-14  Score=137.84  Aligned_cols=133  Identities=20%  Similarity=0.202  Sum_probs=106.7

Q ss_pred             CceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCC
Q 047797          537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN  616 (927)
Q Consensus       537 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  616 (927)
                      .+.+++++++++.+|..+.  ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4567788888888775543  67888888888888776677788888999999999888777777888899999999999


Q ss_pred             cCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccc
Q 047797          617 ALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP  672 (927)
Q Consensus       617 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  672 (927)
                      ++++..+..+. .+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus        87 ~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFD-KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhh-CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88654444444 68899999999999987666667889999999999999987655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=6.4e-14  Score=138.72  Aligned_cols=127  Identities=22%  Similarity=0.270  Sum_probs=66.5

Q ss_pred             eEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcC
Q 047797          539 FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL  618 (927)
Q Consensus       539 ~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  618 (927)
                      .+++++|+++.+|..+.  ++|++|++++|.++ .+|..|..+++|++|++++|++++..+..|.++++|++|+|++|++
T Consensus        14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            34444444444444332  34555555555554 3344555555555555555555554445555555555555555555


Q ss_pred             CCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccccc
Q 047797          619 FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG  669 (927)
Q Consensus       619 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~  669 (927)
                      ++..|..+. .+++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus        91 ~~i~~~~f~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           91 RCIPPRTFD-GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CBCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEeCHHHhC-CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            433333333 45555555555555554444455566666666666666653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=2.7e-14  Score=135.23  Aligned_cols=128  Identities=23%  Similarity=0.238  Sum_probs=83.7

Q ss_pred             CccEEEccCCcCc-CCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCC
Q 047797          268 NILHLDLGFNHLQ-GSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS  346 (927)
Q Consensus       268 ~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~  346 (927)
                      +|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..++      +
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~------~   89 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP------N   89 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT------T
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC------C
Confidence            7778888888877 66777778888888888888888765  6677888888888888888877777766666      4


Q ss_pred             ccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccC--hhhhhcCCCCCEEEc
Q 047797          347 LEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVIS--ETFFSNMSNLQMLFL  424 (927)
Q Consensus       347 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~~~l~~L~~L~L  424 (927)
                      |++|++++|.+++..                      .+..+..+++|++|++++|++++..+  ...+..+++|++|++
T Consensus        90 L~~L~ls~N~i~~~~----------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           90 LTHLNLSGNKIKDLS----------------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CCEEECTTSCCCSHH----------------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCEEECCCCcCCChH----------------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            444444444444321                      22445555555666666555554332  124555666666655


Q ss_pred             c
Q 047797          425 A  425 (927)
Q Consensus       425 ~  425 (927)
                      +
T Consensus       148 ~  148 (149)
T 2je0_A          148 Y  148 (149)
T ss_dssp             B
T ss_pred             C
Confidence            4

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=7e-16  Score=154.03  Aligned_cols=132  Identities=26%  Similarity=0.299  Sum_probs=87.5

Q ss_pred             hhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccc
Q 047797          625 CVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYI  704 (927)
Q Consensus       625 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  704 (927)
                      .+. .+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..++                         
T Consensus        43 ~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~-------------------------   93 (198)
T 1ds9_A           43 TLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD-------------------------   93 (198)
T ss_dssp             HHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH-------------------------
T ss_pred             HHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC-------------------------
Confidence            444 56666666666666664 44 6666677777777777766 3444443333                         


Q ss_pred             eeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCC-ccccCCCCCCeEe
Q 047797          705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIP-PKIGQLKSLDFLD  783 (927)
Q Consensus       705 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~  783 (927)
                                               +|+.|++++|++++ +| .+.++++|++|++++|++++..+ ..+..+++|++|+
T Consensus        94 -------------------------~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           94 -------------------------TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             -------------------------HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             -------------------------cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence                                     33777777777766 33 57777778888888887775432 4577778888888


Q ss_pred             CCCCcCcccCCcc----------ccCCCCCCeEeCcCCcCc
Q 047797          784 LSRNHFSGNIPSS----------LSLLSGLSVLDLSYNSLS  814 (927)
Q Consensus       784 Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~  814 (927)
                      +++|++++.+|..          +..+++|++||  +|+++
T Consensus       147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            8888887766553          67778888876  55554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=1.5e-15  Score=151.52  Aligned_cols=132  Identities=22%  Similarity=0.233  Sum_probs=72.3

Q ss_pred             cccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccc
Q 047797          601 SLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSM  680 (927)
Q Consensus       601 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  680 (927)
                      .+..+++|++|++++|++.+ +| .+. .+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..++ 
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~-  115 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV-  115 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH-
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC-
Confidence            44445555555555555533 44 333 3555555555555555 344444445556666666666554 22 233322 


Q ss_pred             cccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCc-cccccccCCCEEe
Q 047797          681 MIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIP-EEITDLVGLTALN  759 (927)
Q Consensus       681 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~  759 (927)
                                                                       +|+.|++++|++++..+ ..+..+++|++|+
T Consensus       116 -------------------------------------------------~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A          116 -------------------------------------------------NLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             -------------------------------------------------HSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             -------------------------------------------------CCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence                                                             23666666666655332 3566677777777


Q ss_pred             cccccccccCCcc----------ccCCCCCCeEeCCCCcCc
Q 047797          760 LSRNNLTGLIPPK----------IGQLKSLDFLDLSRNHFS  790 (927)
Q Consensus       760 Ls~N~l~~~~p~~----------l~~l~~L~~L~Ls~N~l~  790 (927)
                      +++|.+++.+|..          +..+++|+.||  +|.++
T Consensus       147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            7777776655543          66677777776  56554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.3e-13  Score=134.50  Aligned_cols=131  Identities=20%  Similarity=0.242  Sum_probs=109.6

Q ss_pred             CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      +.+|++|++++|+++.+|......++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            4578888888888888865433445999999999999975  67889999999999999999776666789999999999


Q ss_pred             CCCcCCCCCCh--hhhhcCccCcEEEccCcccceecCcc----ccCCCCCCEEEcccccccc
Q 047797          614 RKNALFGEVPT--CVGGSLQNLIILRLKSNNFHGNIPFQ----LCHLAFIQVLDLSLNNISG  669 (927)
Q Consensus       614 s~N~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~Ls~N~l~~  669 (927)
                      ++|++ +.+|.  .+. .+++|++|++++|++. .+|..    +..+++|+.||+++|.+..
T Consensus        96 ~~N~i-~~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           96 TNNSL-VELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSCCC-CCGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCcC-CcchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999 66776  555 7999999999999998 45553    8899999999999998763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1.6e-13  Score=133.85  Aligned_cols=81  Identities=28%  Similarity=0.345  Sum_probs=43.2

Q ss_pred             eEEEccCCcccccCccccccccCCCEEecccccccccCCc--cccCCCCCCeEeCCCCcCcccCCcc----ccCCCCCCe
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPP--KIGQLKSLDFLDLSRNHFSGNIPSS----LSLLSGLSV  805 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~  805 (927)
                      +.|++++|++++..+..+.++++|++|+|++|+++. +|.  .+..+++|+.|++++|+++ .+|..    +..+++|++
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            444444444444333334555555555555555543 233  4555666666666666665 33442    566666666


Q ss_pred             EeCcCCcCc
Q 047797          806 LDLSYNSLS  814 (927)
Q Consensus       806 L~ls~N~l~  814 (927)
                      ||+++|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=2.3e-13  Score=132.19  Aligned_cols=90  Identities=24%  Similarity=0.258  Sum_probs=82.1

Q ss_pred             ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797          730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS  809 (927)
Q Consensus       730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  809 (927)
                      .|+.|+|++|+|++.+|..|.++++|++|+|++|+|++..+..|.++++|++|||++|+|++..+..|..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            34899999999999989999999999999999999998877778999999999999999997777779999999999999


Q ss_pred             CCcCcccCCC
Q 047797          810 YNSLSGKIPL  819 (927)
Q Consensus       810 ~N~l~~~~p~  819 (927)
                      +|++.|.++.
T Consensus       114 ~N~~~c~~~~  123 (174)
T 2r9u_A          114 NNPWDCECRD  123 (174)
T ss_dssp             SSCBCTTBGG
T ss_pred             CCCccccccc
Confidence            9999998763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.43  E-value=1.5e-12  Score=144.88  Aligned_cols=102  Identities=11%  Similarity=0.140  Sum_probs=68.5

Q ss_pred             ccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCcc
Q 047797          553 CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQN  632 (927)
Q Consensus       553 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~  632 (927)
                      ++..+.+|+.+.+.++ +..+...+|.++.+|+.+++.++ ++.+...+|.+|++|+.+++..+ + ..++...+.++++
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~~  367 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L-RKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTBTTCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c-cEehHHHhhCCCC
Confidence            4566777777777654 55455667778888888888644 66566777888888888888766 4 3454444446788


Q ss_pred             CcEEEccCcccceecCccccCCCCCCEE
Q 047797          633 LIILRLKSNNFHGNIPFQLCHLAFIQVL  660 (927)
Q Consensus       633 L~~L~L~~n~l~~~~~~~l~~l~~L~~L  660 (927)
                      |+.+++..+ +. .+...|.++++|+.+
T Consensus       368 L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          368 LKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            888888654 22 234567777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.42  E-value=1.9e-12  Score=143.34  Aligned_cols=240  Identities=12%  Similarity=0.138  Sum_probs=117.1

Q ss_pred             CccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEe
Q 047797          242 SIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLY  321 (927)
Q Consensus       242 ~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  321 (927)
                      +|+.+++..+ +.  .++...|..+ +|+.+.+.. .++...+.+|.+|++|+.++++.|+++.+...+|. ..+|+.+.
T Consensus       136 ~L~~i~l~~~-i~--~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNEG-LK--SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVL  209 (401)
T ss_dssp             CCSEEECCTT-CC--EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEE
T ss_pred             CccEEEeCCC-cc--EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEE
Confidence            3555555444 21  3344444444 455555553 34434444555555555555555555544444444 35555555


Q ss_pred             CCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecC
Q 047797          322 LPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLD  400 (927)
Q Consensus       322 L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  400 (927)
                      +..+ ++......|.++.      +|+.+++..+ ++..... |.+ .+|+.+.+. +.++.+....|.++++|+.+++.
T Consensus       210 lp~~-l~~I~~~aF~~~~------~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          210 LPVT-LKEIGSQAFLKTS------QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY  279 (401)
T ss_dssp             CCTT-CCEECTTTTTTCT------TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred             eCCc-hheehhhHhhCCC------CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence            5532 4444444444444      5555555543 2322222 444 455555552 33443444555556666666655


Q ss_pred             Ccccc----cccChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCc
Q 047797          401 GNSFT----GVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIG  476 (927)
Q Consensus       401 ~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~  476 (927)
                      +|.+.    ..++...|.++++|+.+++. +.++.+....|..+.+|+.+.+..+ +......+|.++ +|+.+++++|.
T Consensus       280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          280 GSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             SSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             CccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence            55432    12444455566666666665 3355555555555555555555332 333444455555 56666666555


Q ss_pred             cCCCccchHHhhccccceeecccc
Q 047797          477 ISDTIPDWFWDLSIELFFLNLSNN  500 (927)
Q Consensus       477 l~~~~~~~~~~~~~~L~~L~Ls~n  500 (927)
                      +....+..|......++.+.+..+
T Consensus       357 ~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          357 PPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             CcccccccccCCCCCccEEEeCHH
Confidence            543333333333234444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=3.2e-12  Score=141.53  Aligned_cols=243  Identities=14%  Similarity=0.107  Sum_probs=172.2

Q ss_pred             cccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCc
Q 047797          239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLN  318 (927)
Q Consensus       239 ~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  318 (927)
                      .+..++.+.+.++--   .++...|..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+.+.+|.++++|+
T Consensus       111 ~~~~l~~i~ip~~i~---~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          111 ILKGYNEIILPNSVK---SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             ECSSCSEEECCTTCC---EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             ecCCccEEEECCccC---EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            336777777765422   5666666666 8999998876 665666778885 699999986 67767778899999999


Q ss_pred             EEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC-CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEE
Q 047797          319 QLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETL  397 (927)
Q Consensus       319 ~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  397 (927)
                      .+++.+|+++......|. ..      +|+.+.+..+ ++..... |.++++|+.+++..+ ++.+...+|.+ .+|+.+
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~------~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i  253 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YA------GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV  253 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TC------CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred             eeecCCCcceEechhhEe-ec------ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence            999999988876666665 34      8888888854 5555555 888889999988875 55555666777 788888


Q ss_pred             ecCCcccccccChhhhhcCCCCCEEEccCCcce-----ecccCCcccccccceeecccccCCCCCChhhhcCccccEEEc
Q 047797          398 SLDGNSFTGVISETFFSNMSNLQMLFLADNSLT-----LKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDI  472 (927)
Q Consensus       398 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~L  472 (927)
                      .+. +.++ .++...|.++++|+.+++.+|.+.     .+....|..+.+|+.+.+.. .+.......|.++++|+.+++
T Consensus       254 ~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          254 KLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred             EeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence            884 3454 566667888888998888887665     56667777777888887773 455555667777777777777


Q ss_pred             cCCccCCCccchHHhhccccceeecccccccC
Q 047797          473 SNIGISDTIPDWFWDLSIELFFLNLSNNHISG  504 (927)
Q Consensus       473 s~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~  504 (927)
                      ..+ ++. ++...+..+ +|+.+++++|....
T Consensus       331 p~~-l~~-I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          331 PAN-VTQ-INFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             CTT-CCE-ECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             Ccc-ccE-EcHHhCCCC-CCCEEEEcCCCCcc
Confidence            554 332 333333333 66666666665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.40  E-value=4.2e-12  Score=141.34  Aligned_cols=59  Identities=14%  Similarity=0.019  Sum_probs=38.2

Q ss_pred             CcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhcc
Q 047797          279 LQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLS  339 (927)
Q Consensus       279 i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  339 (927)
                      ++.+-..+|.+|.+|+.+.+.. .++.+...+|.++++|+.+++..+ ++......|.++.
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~  117 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY  117 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc
Confidence            3434456788888888888874 366666778888888888888654 3333333344433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=2.1e-12  Score=124.95  Aligned_cols=108  Identities=25%  Similarity=0.283  Sum_probs=82.7

Q ss_pred             CcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecce
Q 047797          633 LIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDN  712 (927)
Q Consensus       633 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (927)
                      .+.+++++|.++. +|..+  .++|++|+|++|+|++..|..|.+++.|                               
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------   56 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL-------------------------------   56 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence            4566666666653 44443  2667778888888777667666655444                               


Q ss_pred             eEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCccc
Q 047797          713 VLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN  792 (927)
Q Consensus       713 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  792 (927)
                                         +.|||++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+++..
T Consensus        57 -------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           57 -------------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             -------------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             -------------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence                               7888888888887777788999999999999999988777899999999999999999864


Q ss_pred             C
Q 047797          793 I  793 (927)
Q Consensus       793 ~  793 (927)
                      .
T Consensus       118 c  118 (170)
T 3g39_A          118 C  118 (170)
T ss_dssp             B
T ss_pred             c
Confidence            3

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=8.1e-14  Score=152.80  Aligned_cols=68  Identities=22%  Similarity=0.220  Sum_probs=37.8

Q ss_pred             ceeEEEccCCccccc----CccccccccCCCEEeccccccccc----CCccccCCCCCCeEeCCCCcCcccCCccc
Q 047797          730 FVKYLDLSSNKLCEA----IPEEITDLVGLTALNLSRNNLTGL----IPPKIGQLKSLDFLDLSRNHFSGNIPSSL  797 (927)
Q Consensus       730 ~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  797 (927)
                      .|++|||++|+|++.    ++..+...++|++|+|++|.|++.    ++..+...++|++|||++|.|+......+
T Consensus       184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            346666666666542    234455556666666666666543    22333345667777777776664433333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=1.4e-11  Score=119.54  Aligned_cols=104  Identities=21%  Similarity=0.228  Sum_probs=51.0

Q ss_pred             ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797          538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA  617 (927)
Q Consensus       538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  617 (927)
                      +.+++++|+++.+|..+.  ++|++|++++|++++..|..|..+++|++|+|++|++++..+..|.+             
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-------------   79 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK-------------   79 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC-------------
Confidence            345555555555554332  44555555555554444444444444444444444444333333344             


Q ss_pred             CCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797          618 LFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS  668 (927)
Q Consensus       618 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  668 (927)
                                  +++|++|+|++|++++..+..+..+++|++|+|++|++.
T Consensus        80 ------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           80 ------------LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ------------CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ------------cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence                        444555555555544333334555556666666666655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.23  E-value=1.3e-11  Score=135.06  Aligned_cols=88  Identities=24%  Similarity=0.186  Sum_probs=67.2

Q ss_pred             eeEEEccC-CcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCc
Q 047797          731 VKYLDLSS-NKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS  809 (927)
Q Consensus       731 L~~LdLs~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  809 (927)
                      |+.|+|++ |+|++.++..|.++++|+.|+|++|+|++.+|..|.++++|+.|||++|+|++..|..+..++ |+.|+++
T Consensus        33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~  111 (347)
T 2ifg_A           33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLS  111 (347)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECC
T ss_pred             eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEee
Confidence            37777775 777777777778888888888888888887777788888888888888888866666666655 8888888


Q ss_pred             CCcCcccCCC
Q 047797          810 YNSLSGKIPL  819 (927)
Q Consensus       810 ~N~l~~~~p~  819 (927)
                      +|+|.|.|+.
T Consensus       112 ~N~~~c~c~l  121 (347)
T 2ifg_A          112 GNPLHCSCAL  121 (347)
T ss_dssp             SSCCCCCGGG
T ss_pred             CCCccCCCcc
Confidence            8888877664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=4.2e-13  Score=147.13  Aligned_cols=187  Identities=18%  Similarity=0.125  Sum_probs=100.5

Q ss_pred             CCCCEEEccCccccccCCCcccc-----cCcccEEEcccccccccCCccc-cCCCCCCEEecCCCcCCCCCChhhh----
Q 047797          558 NSLSILNLANNRFSGKIPDSMGF-----LHNIQTLSLRNNRLNGELPSSL-KNCSKLRVLDLRKNALFGEVPTCVG----  627 (927)
Q Consensus       558 ~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~----  627 (927)
                      +.|++|++++|.++......+..     .++|++|+|++|.++......+ ..+++|++|+|++|.+++.....+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            34555555555554332222222     1456666666666553322222 2344566777777766433222222    


Q ss_pred             hcCccCcEEEccCccccee----cCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccccccc
Q 047797          628 GSLQNLIILRLKSNNFHGN----IPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGY  703 (927)
Q Consensus       628 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  703 (927)
                      ...++|++|+|++|.++..    ++..+...++|++|+|++|.++......+..                          
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~--------------------------  205 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA--------------------------  205 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH--------------------------
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH--------------------------
Confidence            1245677777777777542    3444567778888888888876432211111                          


Q ss_pred             ceeeeecceeEEeeecccccccccccceeEEEccCCccccc----CccccccccCCCEEecccccccccCCccccCC---
Q 047797          704 IYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEA----IPEEITDLVGLTALNLSRNNLTGLIPPKIGQL---  776 (927)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---  776 (927)
                                          .+...+.|+.|||++|.|++.    ++..+...++|++|+|++|.|++.....+..+   
T Consensus       206 --------------------~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~  265 (372)
T 3un9_A          206 --------------------QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGA  265 (372)
T ss_dssp             --------------------HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC--
T ss_pred             --------------------HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcC
Confidence                                011223458888888888753    33445567889999999998876544444332   


Q ss_pred             C--CCCeEe--CCCCcCc
Q 047797          777 K--SLDFLD--LSRNHFS  790 (927)
Q Consensus       777 ~--~L~~L~--Ls~N~l~  790 (927)
                      .  .|+.+.  +..|.++
T Consensus       266 ~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          266 AEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             ----CEEECCCC----CH
T ss_pred             CCccchhhHhhhcCCccC
Confidence            1  155555  5555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.14  E-value=2e-09  Score=119.63  Aligned_cols=108  Identities=9%  Similarity=0.179  Sum_probs=53.8

Q ss_pred             cccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCc
Q 047797          552 DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQ  631 (927)
Q Consensus       552 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~  631 (927)
                      .+|.++++|+.+.+. +.+..+...+|.++.+|+.+++..+ ++.+...+|.+|++|+.+.+..+ + ..+....+.+++
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v-~~I~~~aF~~C~  357 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V-TKIPESAFSNCT  357 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C-CBCCGGGGTTCT
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c-CEEhHhHhhCCC
Confidence            345556666666664 3344344455666666666666543 44455556666666666666543 3 344444444566


Q ss_pred             cCcEEEccCcccceecCccccCCCCCCEEEccccc
Q 047797          632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNN  666 (927)
Q Consensus       632 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~  666 (927)
                      +|+.+++.++....   ..+....+|+.+.+..|.
T Consensus       358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred             CCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence            66666666554331   234455556666555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.12  E-value=2.3e-09  Score=119.18  Aligned_cols=75  Identities=15%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN  811 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  811 (927)
                      +.+++..+ ++.+....|.++.+|+++.+..+ ++.+-..+|.++++|+.+++.+|....   ..+...+.|+.+++..|
T Consensus       314 ~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          314 KSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred             CEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence            44444322 33333445555555555555432 443434455555555555555554331   23444455555554443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=5.7e-11  Score=129.85  Aligned_cols=66  Identities=17%  Similarity=0.153  Sum_probs=35.9

Q ss_pred             EEecCCC-cCCCCCChhhhhcCccCcEEEccC-cccceecCccccCCCCCCEEEccccccccccchhhccc
Q 047797          610 VLDLRKN-ALFGEVPTCVGGSLQNLIILRLKS-NNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF  678 (927)
Q Consensus       610 ~L~Ls~N-~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  678 (927)
                      .++.+++ .+ ..+|. +. .+++|++|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.++
T Consensus        12 ~v~~~~~n~l-~~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l   79 (347)
T 2ifg_A           12 GLRCTRDGAL-DSLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT   79 (347)
T ss_dssp             CEECCSSCCC-TTTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred             EEEcCCCCCC-CccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC
Confidence            3455555 55 34555 43 455566666654 55655555555555555555555555555555444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.81  E-value=1.7e-07  Score=103.51  Aligned_cols=67  Identities=12%  Similarity=0.121  Sum_probs=42.8

Q ss_pred             eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCC
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLL  800 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l  800 (927)
                      +.+++.++.++.+....|.++.+|+.++|..+ ++.+-..+|.++++|+.+.+..+ ++.+-...|.+.
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            66666666666656667777777777777543 55555567777777777777554 554445556554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.81  E-value=2.2e-07  Score=102.50  Aligned_cols=59  Identities=7%  Similarity=0.152  Sum_probs=30.3

Q ss_pred             CCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCC
Q 047797          364 LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN  427 (927)
Q Consensus       364 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  427 (927)
                      |.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .++...|... +|+.+.+..+
T Consensus        65 F~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~i~lp~~  123 (379)
T 4h09_A           65 FNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDDFEFPGA  123 (379)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSEEECCTT
T ss_pred             hhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-CcccccCCCc
Confidence            556666666666543 443444455554 4666555433 22 3444445443 5666666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=2.2e-09  Score=116.41  Aligned_cols=164  Identities=18%  Similarity=0.194  Sum_probs=86.9

Q ss_pred             ccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCcccc--CCCCCCEEEcccc--ccccccchhh
Q 047797          600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLC--HLAFIQVLDLSLN--NISGKIPKCF  675 (927)
Q Consensus       600 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~N--~l~~~~p~~~  675 (927)
                      ..+..+|+|+.|+|++|.- -.++. +  .+++|+.|++..|.+.......+.  .+++|++|+|+.+  ...+..  .+
T Consensus       166 ~ll~~~P~L~~L~L~g~~~-l~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~  239 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNN-LSIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DM  239 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBT-CBCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CG
T ss_pred             HHHhcCCCCcEEEEeCCCC-ceecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hH
Confidence            4455667777777777631 12332 2  367788888777776544333343  6778888887532  211110  01


Q ss_pred             ccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccc---cc
Q 047797          676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEIT---DL  752 (927)
Q Consensus       676 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~---~l  752 (927)
                      ..+..+                                         .....++.|+.|+|++|.+.+..+..+.   .+
T Consensus       240 ~~l~~~-----------------------------------------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~  278 (362)
T 2ra8_A          240 NVFRPL-----------------------------------------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL  278 (362)
T ss_dssp             GGTGGG-----------------------------------------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG
T ss_pred             HHHHHH-----------------------------------------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccC
Confidence            010000                                         0001245667777777777654333332   36


Q ss_pred             cCCCEEeccccccccc----CCccccCCCCCCeEeCCCCcCcccCCccccC-CCCCCeEeCcCCc
Q 047797          753 VGLTALNLSRNNLTGL----IPPKIGQLKSLDFLDLSRNHFSGNIPSSLSL-LSGLSVLDLSYNS  812 (927)
Q Consensus       753 ~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~ls~N~  812 (927)
                      ++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. +  ...+++++|+
T Consensus       279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            6777777777777653    2333345677777777777766432222322 1  2445555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=1.4e-07  Score=102.08  Aligned_cols=139  Identities=22%  Similarity=0.255  Sum_probs=80.6

Q ss_pred             cchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHh--hccCCCcCCCccEEEccC--CCCc
Q 047797          283 IPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQ--NLSSGCTVNSLEGLCLYA--NDIT  358 (927)
Q Consensus       283 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~~~~~~~L~~L~L~~--n~l~  358 (927)
                      +...+..+++|+.|++++|.-. ..+. + .+++|++|++..+.++......+.  .++      +|+.|+|+.  +...
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~  234 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYG  234 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGT
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEeccccccc
Confidence            4455667778888888776311 1222 3 267788888887777655444444  344      788887753  1111


Q ss_pred             cc------CCCC--CCCCCCCEEEccCCcCCCcchhhhh---ccCCCCEEecCCcccccccChhh---hhcCCCCCEEEc
Q 047797          359 GP------IPDL--GRFLSLKVLKLGENHLNGTINKSLS---HLFKLETLSLDGNSFTGVISETF---FSNMSNLQMLFL  424 (927)
Q Consensus       359 ~~------~~~l--~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L  424 (927)
                      +.      .+.+  ..+++|++|+|++|.+.+..+..+.   .+++|++|+|+.|.+.+......   +..+++|+.|++
T Consensus       235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred             cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence            11      1112  3467888888887777644333333   36677888887777764322211   234567777777


Q ss_pred             cCCcce
Q 047797          425 ADNSLT  430 (927)
Q Consensus       425 ~~n~l~  430 (927)
                      ++|.++
T Consensus       315 ~~n~i~  320 (362)
T 2ra8_A          315 KYNYLS  320 (362)
T ss_dssp             CSBBCC
T ss_pred             CCCcCC
Confidence            776654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=4.2e-07  Score=93.10  Aligned_cols=65  Identities=26%  Similarity=0.334  Sum_probs=30.4

Q ss_pred             ccceeEEEccCCcccc--cCccccccccCCCEEecccccccccCCccccCCC--CCCeEeCCCCcCcccCC
Q 047797          728 LGFVKYLDLSSNKLCE--AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLK--SLDFLDLSRNHFSGNIP  794 (927)
Q Consensus       728 l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p  794 (927)
                      ++.|+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            3445555555555554  2234444555555555555555543  2233332  45555555555544333

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.27  E-value=1.8e-07  Score=95.76  Aligned_cols=84  Identities=26%  Similarity=0.300  Sum_probs=66.2

Q ss_pred             EEccCCccc---ccCccccccccCCCEEeccccccccc--CCccccCCCCCCeEeCCCCcCcccCCccccCCC--CCCeE
Q 047797          734 LDLSSNKLC---EAIPEEITDLVGLTALNLSRNNLTGL--IPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLS--GLSVL  806 (927)
Q Consensus       734 LdLs~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L  806 (927)
                      ++++.|+..   +.++....++++|++|+|++|+|++.  +|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            677888432   33333336789999999999999984  456777899999999999999976  3455555  89999


Q ss_pred             eCcCCcCcccCCC
Q 047797          807 DLSYNSLSGKIPL  819 (927)
Q Consensus       807 ~ls~N~l~~~~p~  819 (927)
                      ++++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            9999999998774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.21  E-value=9.5e-07  Score=86.12  Aligned_cols=44  Identities=5%  Similarity=0.001  Sum_probs=22.2

Q ss_pred             hhhcCCCCCEEEccCC-cCCCc----CcccccCCCCCcEEeCCCCCCCC
Q 047797          286 AFQHMVSLRLLSLASN-ELEGG----IPKFFGNMCSLNQLYLPRNKLSG  329 (927)
Q Consensus       286 ~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~  329 (927)
                      .+...+.|++|+|++| .+...    +...+...++|++|+|++|.+..
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~   79 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND   79 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh
Confidence            3444555555555555 44321    22334445566666666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.18  E-value=5.8e-07  Score=87.63  Aligned_cols=61  Identities=23%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             CccEEEccCCcCcCC----cchhhhcCCCCCEEEc--cCCcCCCc----CcccccCCCCCcEEeCCCCCCC
Q 047797          268 NILHLDLGFNHLQGS----IPEAFQHMVSLRLLSL--ASNELEGG----IPKFFGNMCSLNQLYLPRNKLS  328 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L--s~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~  328 (927)
                      .|++|+|++|.+...    +...+...+.|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            556666666655432    2334555566666666  55665532    1233344456666666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=2.7e-06  Score=80.55  Aligned_cols=83  Identities=20%  Similarity=0.232  Sum_probs=36.5

Q ss_pred             CCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCC----CCCcEEECCCcc-CCCCCchHHhhcCCC
Q 047797          140 KLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHL----SSLRHLDLSCIN-LTKSSDWFQVVSQLH  214 (927)
Q Consensus       140 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~~~l~~l~  214 (927)
                      +|++||+++|.++..--..++++++|++|+|++|..++...+..++.+    ++|++|+|++|. +++  .-...+.+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhcCC
Confidence            344444444444333333344445555555555444444344444443    245555555543 333  1223344444


Q ss_pred             CCCEEEcCCC
Q 047797          215 SLKTLVLRSC  224 (927)
Q Consensus       215 ~L~~L~L~~n  224 (927)
                      +|++|++++|
T Consensus       140 ~L~~L~L~~c  149 (176)
T 3e4g_A          140 NLKYLFLSDL  149 (176)
T ss_dssp             TCCEEEEESC
T ss_pred             CCCEEECCCC
Confidence            5555555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.67  E-value=1.3e-05  Score=75.76  Aligned_cols=85  Identities=12%  Similarity=0.038  Sum_probs=52.0

Q ss_pred             CcccEEEcccccccccCCccccCCCCCCEEecCCCc-CCCCCChhhhh---cCccCcEEEccCcc-cceecCccccCCCC
Q 047797          582 HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA-LFGEVPTCVGG---SLQNLIILRLKSNN-FHGNIPFQLCHLAF  656 (927)
Q Consensus       582 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~---~l~~L~~L~L~~n~-l~~~~~~~l~~l~~  656 (927)
                      ..|+.||++++.++...-..+.++++|++|+|++|. +++.--..+..   ..++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666666665544555667777777777774 33222222221   02467888888774 65444445667888


Q ss_pred             CCEEEccccc
Q 047797          657 IQVLDLSLNN  666 (927)
Q Consensus       657 L~~L~Ls~N~  666 (927)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888888875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.58  E-value=8.9e-05  Score=66.97  Aligned_cols=66  Identities=21%  Similarity=0.204  Sum_probs=49.4

Q ss_pred             EEeccccccc-ccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCC
Q 047797          757 ALNLSRNNLT-GLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQ  824 (927)
Q Consensus       757 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~  824 (927)
                      .++.+++.++ ..+|..+.  ++|+.|||++|+|+...+..|..+++|++|+|++|+|.|.|.......
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~   78 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRA   78 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHH
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHH
Confidence            5666677665 24454443  468889999999987777778889999999999999999887543333

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.77  E-value=0.00031  Score=67.72  Aligned_cols=113  Identities=16%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             cCCCCCEEEccCc-ccccc----CCCcccccCcccEEEcccccccccC----CccccCCCCCCEEecCCCcCCCCCChhh
Q 047797          556 NFNSLSILNLANN-RFSGK----IPDSMGFLHNIQTLSLRNNRLNGEL----PSSLKNCSKLRVLDLRKNALFGEVPTCV  626 (927)
Q Consensus       556 ~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  626 (927)
                      +-+.|++|+|++| .|...    +.+++..-..|+.|+|++|+|....    ...+..-+.|++|+|++|.|.+..-..+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4456777777764 55432    2334455567777777777776432    2334455677777777777743322222


Q ss_pred             hh---cCccCcEEEccCc---ccce----ecCccccCCCCCCEEEccccccc
Q 047797          627 GG---SLQNLIILRLKSN---NFHG----NIPFQLCHLAFIQVLDLSLNNIS  668 (927)
Q Consensus       627 ~~---~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~Ls~N~l~  668 (927)
                      ..   .-+.|++|+|++|   .+..    .+...+..-+.|+.|+++.|.+.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            21   2346778888654   3322    23445666778888888877654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.64  E-value=0.0033  Score=60.59  Aligned_cols=37  Identities=14%  Similarity=0.113  Sum_probs=18.8

Q ss_pred             CCCCEEEccCCc---CCC----cchhhhhccCCCCEEecCCccc
Q 047797          368 LSLKVLKLGENH---LNG----TINKSLSHLFKLETLSLDGNSF  404 (927)
Q Consensus       368 ~~L~~L~Ls~n~---l~~----~~~~~l~~l~~L~~L~L~~n~l  404 (927)
                      +.|++|+|++|.   +..    .+...+..-+.|+.|+++.|.+
T Consensus       126 ~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          126 QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            346666665442   221    1223455556666666665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.51  E-value=0.0032  Score=56.59  Aligned_cols=57  Identities=30%  Similarity=0.406  Sum_probs=48.7

Q ss_pred             eEEEccCCccc-ccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCc
Q 047797          732 KYLDLSSNKLC-EAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFS  790 (927)
Q Consensus       732 ~~LdLs~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  790 (927)
                      ..+|.++++++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            58999999997 35665442  46999999999999888888999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	927
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	9e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 92.1 bits (227), Expect = 8e-21
 Identities = 72/280 (25%), Positives = 105/280 (37%), Gaps = 7/280 (2%)

Query: 567 NNRFSGKIPDSMGFLHNIQTLSLRNNRLNG--ELPSSLKNCSKLRVLDLRKNALFGEVPT 624
           N  + G + D+    + +  L L    L     +PSSL N   L  L +           
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 625 CVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQE 684
                L  L  L +   N  G IP  L  +  +  LD S N +SG +P   S+   ++  
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154

Query: 685 K-SSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCE 743
               N I G   +       ++    +    LT         +           S  + E
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG----KIPPTFANLNLAFVDLSRNMLE 210

Query: 744 AIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGL 803
                +      T       N       K+G  K+L+ LDL  N   G +P  L+ L  L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 804 SVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLP 843
             L++S+N+L G+IP G  LQ F+ S YA N  LCG PLP
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.8 bits (195), Expect = 1e-16
 Identities = 56/304 (18%), Positives = 95/304 (31%), Gaps = 19/304 (6%)

Query: 35  CIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCC--KWRGVRCSNTTGHVKVLNLQTS 92
           C  ++++ALL  K+ L +    LSSW       DCC   W GV C   T   +V NL  S
Sbjct: 3   CNPQDKQALLQIKKDLGNP-TTLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 93  DHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPS 152
                +       I  +L  L  L  L +   +    P+P  I  L++L YL ++    S
Sbjct: 59  GLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 153 SKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQ 212
             IP     +      +   + L         S  + +              D +   S+
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 213 LHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHL 272
           L            +             + +   L   D           +   S      
Sbjct: 175 LF---------TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 273 DLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLS 332
                +             +L  L L +N + G +P+    +  L+ L +  N L G++ 
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 333 ELIQ 336
           +   
Sbjct: 286 QGGN 289

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.2 bits (170), Expect = 2e-13
 Identities = 50/263 (19%), Positives = 93/263 (35%), Gaps = 5/263 (1%)

Query: 365 GRFLSLKVLKLGENHLNG--TINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQML 422
            +   +  L L   +L     I  SL++L  L  L + G +          + ++ L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 423 FLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIP 482
           ++   +++  +         L  L  +   +    P  + +   L+ +      IS  IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 483 DWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNL 542
           D +   S     + +S N ++GK+P      +   V    +           S+     +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 543 SKNKFSGLPDCWLNFNSLSIL--NLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPS 600
              K S   D      S ++   +L NNR  G +P  +  L  + +L++  N L GE+P 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 601 SLKNCSKLRVLDLRKNALFGEVP 623
              N  +  V     N      P
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.2 bits (199), Expect = 7e-17
 Identities = 64/436 (14%), Positives = 133/436 (30%), Gaps = 81/436 (18%)

Query: 352 LYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISET 411
           L   ++T  +        +  L+     +       + +L  L  ++   N  T +    
Sbjct: 29  LGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP-- 83

Query: 412 FFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLD 471
              N++ L  +          ++++ +              +                 +
Sbjct: 84  -LKNLTKLVDIL---------MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 472 ISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIP 531
           ++ + +S         LS       LS  +    L  L+ L + + +   S+   D  + 
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 532 PLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN 591
              +N   L  + N+ S +    +  N L  L+L  N+       ++  L N+  L L N
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTN-LDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 592 NRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQL 651
           N+++   P  L   +KL  L L  N +    P           +  L+ N         +
Sbjct: 251 NQISNLAP--LSGLTKLTELKLGANQISNISPLA-----GLTALTNLELNENQLEDISPI 303

Query: 652 CHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLD 711
            +L  +  L L  NNIS   P   S+ + +                              
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKL------------------------------ 331

Query: 712 NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPP 771
                               + L  ++NK+  +    + +L  +  L+   N ++ L P 
Sbjct: 332 --------------------QRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP- 368

Query: 772 KIGQLKSLDFLDLSRN 787
            +  L  +  L L+  
Sbjct: 369 -LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.7 bits (195), Expect = 3e-16
 Identities = 72/357 (20%), Positives = 133/357 (37%), Gaps = 24/357 (6%)

Query: 268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
            +  L      ++ SI +  +++ +L  ++ ++N+L    P    N+  L  + +  N++
Sbjct: 45  QVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100

Query: 328 SGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIP-------DLGRFLSLKVLKLGENHL 380
           +           +G T+ + +   +        +         +    +L  L   +   
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 381 NGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPA 440
            G     L  L  L TL     S   V   +  + ++NL+ L   +N ++       +  
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT- 219

Query: 441 FQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNN 500
             L  LSL   ++       L +   L  LD++N  IS+  P        +L  L L  N
Sbjct: 220 -NLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGL---TKLTELKLGAN 273

Query: 501 HISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSL 560
            IS  +  L+ L +   +    +   D        N T+L L  N  S +     +   L
Sbjct: 274 QISN-ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS-SLTKL 331

Query: 561 SILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA 617
             L  ANN+ S     S+  L NI  LS  +N+++   P  L N +++  L L   A
Sbjct: 332 QRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.7 bits (195), Expect = 3e-16
 Identities = 75/439 (17%), Positives = 132/439 (30%), Gaps = 82/439 (18%)

Query: 373 LKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLK 432
             LG+ ++  T+  S + L ++ TL  D     G+ S      ++NL  +  ++N LT  
Sbjct: 27  TVLGKTNVTDTV--SQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLT-- 79

Query: 433 LSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIEL 492
              D  P   L  L                     ++           I       ++  
Sbjct: 80  ---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136

Query: 493 FFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD 552
             L+ +       L  L+ L+       ++       +  L       N   +       
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS----- 191

Query: 553 CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLD 612
                 +L  L   NN+ S   P  +G L N+  LSL  N+L      +L + + L  LD
Sbjct: 192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 613 LRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIP 672
           L  N +    P                           L  L  +  L L  N IS   P
Sbjct: 248 LANNQISNLAP---------------------------LSGLTKLTELKLGANQISNISP 280

Query: 673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVK 732
                    ++                                  +  +    S L  + 
Sbjct: 281 LAGLTALTNLELN------------------------------ENQLEDISPISNLKNLT 310

Query: 733 YLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGN 792
           YL L  N + +  P  ++ L  L  L  + N ++      +  L ++++L    N  S  
Sbjct: 311 YLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDL 366

Query: 793 IPSSLSLLSGLSVLDLSYN 811
            P  L+ L+ ++ L L+  
Sbjct: 367 TP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 1e-13
 Identities = 61/337 (18%), Positives = 110/337 (32%), Gaps = 38/337 (11%)

Query: 112 KLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVE 171
            L  L  ++ S N          + +L+KL  + ++    +   P               
Sbjct: 64  YLNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 172 NSNLFSVGSLERLSHLSSLRHLDLSCINLT------KSSDWFQVVSQLHSLKTLVLRSCY 225
                         +   L    +S I+        +   +   V+ L  L  L      
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 226 LPPINPSFIWLFNLS-TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIP 284
               N           T++E+L  ++N +   +    L NL      L L  N L+    
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD----ELSLNGNQLKD--I 234

Query: 285 EAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG--QLSELIQNLSSGC 342
                + +L  L LA+N++    P     +  L +L L  N++S    L+ L    +   
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292

Query: 343 TVNS------------LEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSH 390
             N             L  L LY N+I+   P +     L+ L    N ++     SL++
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDV--SSLAN 349

Query: 391 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN 427
           L  +  LS   N  + +      +N++ +  L L D 
Sbjct: 350 LTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.6 bits (169), Expect = 5e-13
 Identities = 72/367 (19%), Positives = 129/367 (35%), Gaps = 31/367 (8%)

Query: 465 NQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSN 524
           +Q+ +L    +GI     D    L+  L  +N SNN ++  +  L  L     ++  ++ 
Sbjct: 44  DQVTTLQADRLGIKSI--DGVEYLN-NLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQ 99

Query: 525 NFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNI 584
             D       +N T L L  N+ + +       N   +   +N          +  +  +
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT---------ISDISAL 150

Query: 585 QTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
             L+       G   + LK  + L  L+    +        V   L NL  L   +N   
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210

Query: 645 GNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYI 704
              P  +     +  L L+ N +   I    S  ++   + ++N I  LA         +
Sbjct: 211 DITPLGILT--NLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--------L 259

Query: 705 YYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNN 764
                L  + L             G     +L  N+        I++L  LT L L  NN
Sbjct: 260 SGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 765 LTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG--TQ 822
           ++ + P  +  L  L  L  + N  S    SSL+ L+ ++ L   +N +S   PL   T+
Sbjct: 319 ISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLANLTR 374

Query: 823 LQSFNAS 829
           +     +
Sbjct: 375 ITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.3 bits (163), Expect = 2e-12
 Identities = 60/379 (15%), Positives = 126/379 (33%), Gaps = 20/379 (5%)

Query: 129 SPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLS 188
           +P+ +     +    +    G  +        DL        +   +    S++ + +L+
Sbjct: 10  TPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI---KSIDGVEYLN 66

Query: 189 SLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDL 248
           +L  ++ S   LT  +     +  L  L  +++ +  +  I P          ++    +
Sbjct: 67  NLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 249 SDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIP 308
           +D     +        LS N +      + L      +F + V+          LE    
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 309 KFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFL 368
                        L   +     +  I +++    + +L+ L L  N +   I  L    
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLT 241

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
           +L  L L  N ++      LS L KL  L L  N  + +      + ++NL++       
Sbjct: 242 NLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 429 LTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL 488
                         L +L+L    +    P  + +  +L  L  +N  +SD       +L
Sbjct: 300 -----ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANL 350

Query: 489 SIELFFLNLSNNHISGKLP 507
           +  + +L+  +N IS   P
Sbjct: 351 T-NINWLSAGHNQISDLTP 368

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.0 bits (188), Expect = 1e-15
 Identities = 51/302 (16%), Positives = 99/302 (32%), Gaps = 29/302 (9%)

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
           +L  +   LDL  N +       F+++ +L  L L +N++    P  F  +  L +LYL 
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT 383
           +N+L     ++        T+  L         +   + +    + +  L       +G 
Sbjct: 88  KNQLKELPEKMP------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 384 INKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQL 443
            N +   + KL  + +   + T +          +L  L L  N +T   +        L
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 444 KWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHIS 503
             L L+   +       L     L  L ++N  +              +  + L NN+IS
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNIS 255

Query: 504 GKLPDLSVLKSDDIVIDISSNNFDGP-IPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSI 562
                            I SN+F  P      ++ + ++L  N           F  + +
Sbjct: 256 A----------------IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

Query: 563 LN 564
             
Sbjct: 300 RA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 1e-15
 Identities = 49/300 (16%), Positives = 97/300 (32%), Gaps = 17/300 (5%)

Query: 518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSGKIPD 576
           V+  S    +     LP ++  L+L  NK + + D    N  +L  L L NN+ S   P 
Sbjct: 14  VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 73

Query: 577 SMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIIL 636
           +   L  ++ L L  N+L        K   +LRV +     +   V   +  +   ++ L
Sbjct: 74  AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVEL 131

Query: 637 RLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANE 696
                   G        +  +  + ++  NI+        + + +      N I  +   
Sbjct: 132 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL--HLDGNKITKVDAA 189

Query: 697 ILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLT 756
            L     +       N +             L  +      +N     +P  + D   + 
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL----NNNKLVKVPGGLADHKYIQ 245

Query: 757 ALNLSRNNLTGL------IPPKIGQLKSLDFLDLSRNH--FSGNIPSSLSLLSGLSVLDL 808
            + L  NN++ +       P    +  S   + L  N   +    PS+   +   + + L
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 57/314 (18%), Positives = 94/314 (29%), Gaps = 31/314 (9%)

Query: 70  CKWRGVRCSNT---------TGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLD 120
           C  R V+CS+               +L+LQ           +          L+ L  L 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQ--------NNKITEIKDGDFKNLKNLHTLI 61

Query: 121 LSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGS 180
           L  N       P     L KL  L LS            + L        E + +     
Sbjct: 62  LINNKISKIS-PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK--- 117

Query: 181 LERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLS 240
               + L+ +  ++L    L  S         +  L  + +    +  I         L 
Sbjct: 118 -SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------LP 170

Query: 241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLAS 300
            S+  L L  N +  + V         N+  L L FN +      +  +   LR L L +
Sbjct: 171 PSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 301 NELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGP 360
           N+L   +P    +   +  +YL  N +S   S             S  G+ L++N +   
Sbjct: 229 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

Query: 361 IPDLGRFLSLKVLK 374
                 F  + V  
Sbjct: 288 EIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 49/296 (16%), Positives = 82/296 (27%), Gaps = 49/296 (16%)

Query: 116 LRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL 175
              LDL  N            +L  L  L L     S   P  F                
Sbjct: 33  TALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAF---------------- 75

Query: 176 FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIW 235
                    + L  L  L LS   L +  +      Q            +   I      
Sbjct: 76  ---------APLVKLERLYLSKNQLKELPEKMPKTLQELR--------VHENEITKVRKS 118

Query: 236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRL 295
           +FN    +  ++L  N L SS +    F   + + ++ +   ++            SL  
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTE 175

Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYAN 355
           L L  N++          + +L +L L  N +S        +  S      L  L L  N
Sbjct: 176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA------VDNGSLANTPHLRELHLNNN 229

Query: 356 DITGPIPDLGRFLSLKVLKLGENHLNG------TINKSLSHLFKLETLSLDGNSFT 405
            +      L     ++V+ L  N+++             +       +SL  N   
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.7 bits (138), Expect = 2e-09
 Identities = 49/270 (18%), Positives = 87/270 (32%), Gaps = 3/270 (1%)

Query: 443 LKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHI 502
              L L + K+        +    L +L + N  IS   P  F  L  +L  L LS N +
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-KLERLYLSKNQL 91

Query: 503 SGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSI 562
                 +     +  V +         +    +    + L  N           F  +  
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 563 LNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEV 622
           L+      +       G   ++  L L  N++     +SLK  + L  L L  N++    
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211

Query: 623 PTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMI 682
              +  +     +    +NN    +P  L    +IQV+ L  NNIS      F       
Sbjct: 212 NGSLANTPHLREL--HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 269

Query: 683 QEKSSNPIIGLANEILVVPGYIYYFRYLDN 712
           ++ S + +   +N +         FR +  
Sbjct: 270 KKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (134), Expect = 6e-09
 Identities = 47/218 (21%), Positives = 78/218 (35%), Gaps = 7/218 (3%)

Query: 608 LRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNI 667
             +LDL+ N +  E+      +L+NL  L L +N      P     L  ++ L LS N +
Sbjct: 33  TALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 668 SGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKST 727
                K       +      N I  +   +      +     L    L   G E+     
Sbjct: 92  KELPEKMPKTLQELRV--HENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQG 148

Query: 728 LGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRN 787
           +  + Y+ ++   +   IP+ +     LT L+L  N +T +    +  L +L  L LS N
Sbjct: 149 MKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 788 HFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQS 825
             S     SL+    L  L L+ N L          + 
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY 243

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 7e-08
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 8/212 (3%)

Query: 631 QNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQ-EKSSNP 689
            +  +L L++N           +L  +  L L  N IS   P  F+    + +   S N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 690 IIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI 749
           +  L  ++      +         +     +       +     L  +  K         
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV----ELGTNPLKSSGIENGAF 146

Query: 750 TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS 809
             +  L+ + ++  N+T +     G   SL  L L  N  +    +SL  L+ L+ L LS
Sbjct: 147 QGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 810 YNSLSGKIPLGTQLQSFNASVYAGNLELCGLP 841
           +NS+S               ++  N +L  +P
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 3e-06
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
           + +  S   L E +P+++        L+L  N +T +       LK+L  L L  N  S 
Sbjct: 13  RVVQCSDLGL-EKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 792 NIPSSLSLLSGLSVLDLSYNSLSG 815
             P + + L  L  L LS N L  
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 24/191 (12%), Positives = 56/191 (29%), Gaps = 11/191 (5%)

Query: 87  LNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNL 146
           LN               G  + A   ++ L ++ ++  +    P     G    L  L+L
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTELHL 178

Query: 147 SCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDW 206
                +       + L+      +  +++ +V +    +      HL    +N  K    
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT----PHLRELHLNNNKLVKV 234

Query: 207 FQVVSQLHSLKTLVLRSCYLPPINPS---FIWLFNLSTSIETLDLSDNHLPSSSVYPWLF 263
              ++    ++ + L +  +  I  +            S   + L  N +    + P  F
Sbjct: 235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 294

Query: 264 NLSRNILHLDL 274
                   + L
Sbjct: 295 RCVYVRAAVQL 305

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 3e-13
 Identities = 52/284 (18%), Positives = 87/284 (30%), Gaps = 17/284 (5%)

Query: 514 SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWL-NFNSLSILNLANNRFSG 572
              +               +P+ S  + L  N+ S +P        +L+IL L +N  + 
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 573 KIPDSMGFLHNIQTLSLRNNRLNGEL-PSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQ 631
               +   L  ++ L L +N     + P++     +L  L L       E+   +   L 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLA 129

Query: 632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEK-SSNPI 690
            L  L L+ N            L  +  L L  N IS    + F     + +     N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 691 IGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKL---CEAIPE 747
             +        G +       N L             L   +YL L+ N     C A P 
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL---QYLRLNDNPWVCDCRARPL 246

Query: 748 EITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG 791
                  L     S + +   +P    +L   D   L+ N   G
Sbjct: 247 ----WAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 1e-12
 Identities = 43/256 (16%), Positives = 75/256 (29%), Gaps = 9/256 (3%)

Query: 369 SLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNS 428
           + + + L  N ++     S      L  L L  N    + +  F       Q+    +  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 429 LTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDL 488
           L       +    +L  L L  C +    P   +    L  L + +  +     D F D 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD- 151

Query: 489 SIELFFLNLSNNHISGKLPD----LSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSK 544
              L  L L  N IS         L  L    +  +  ++        L    T    + 
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 545 NKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKN 604
           N  +   +      +L  L L +N +      +      +Q     ++ +   LP  L  
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 605 CSKLRVLDLRKNALFG 620
                +  L  N L G
Sbjct: 271 ---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 26/274 (9%)

Query: 238 NLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLS 297
            +  + + + L  N + S              +         +          +  +L  
Sbjct: 29  GIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 298 LASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDI 357
             + +L    P  F  +  L+ L+L R                   + +L+ L L  N +
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCG------LQELGPGLFRGLAALQYLYLQDNAL 141

Query: 358 TGPIPD-LGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNM 416
                D      +L  L L  N ++    ++   L  L+ L L  N    V    F    
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 417 SNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLA------SCKMGPHFPNWLQTQNQLISL 470
             + +     N+L+   +    P   L++L L        C+  P    WLQ        
Sbjct: 202 RLMTLYLF-ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQ------KF 253

Query: 471 DISNIGISDTIPDWFWDLSIELFFLNLSNNHISG 504
             S+  +  ++P       +      L+ N + G
Sbjct: 254 RGSSSEVPCSLPQRLAGRDL----KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 48/266 (18%), Positives = 84/266 (31%), Gaps = 12/266 (4%)

Query: 264 NLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLP 323
            +      + L  N +      +F+   +L +L L SN L       F  +  L QL L 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 324 RNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGT 383
            N     +     +         L+   L                +L+ L L +N L   
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG----LAALQYLYLQDNALQAL 144

Query: 384 INKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQL 443
            + +   L  L  L L GN  + V    F   + +L  L L  N +     H +    +L
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 444 KWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIP-DWFWDLSIELFFLNLSNNHI 502
             L L +  +       L     L  L +++            W     L     S++ +
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW---LQKFRGSSSEV 260

Query: 503 SGKLPDLSVLKSDDIVIDISSNNFDG 528
              LP     +    +  +++N+  G
Sbjct: 261 PCSLPQRLAGRD---LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 3e-09
 Identities = 48/269 (17%), Positives = 83/269 (30%), Gaps = 21/269 (7%)

Query: 116 LRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNL 175
            + + L  N     P      +   L  L L     +      F  L+  E  ++ ++  
Sbjct: 34  SQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 176 FSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIW 235
                      L  L  L L    L +      +   L +L+ L L+   L  +      
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQEL--GPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 236 LFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRL 295
                 ++  L L  N +   SV    F    ++  L L  N +    P AF+ +  L  
Sbjct: 151 DLG---NLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 296 LSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSG--QLSELIQNLSSGCTVNSLEGLCLY 353
           L L +N L     +    + +L  L L  N      +   L   L               
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK---------FRGS 256

Query: 354 ANDITGPIPDLGRFLSLKVLKLGENHLNG 382
           ++++   +P   R     + +L  N L G
Sbjct: 257 SSEVPCSLPQ--RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 43/245 (17%), Positives = 86/245 (35%), Gaps = 17/245 (6%)

Query: 188 SSLRHLDLSCINLTK-SSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETL 246
           ++ + + L    ++   +  F+    L               +            ++   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLT-------ILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 247 DLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGG 306
               ++    SV P  F+    +  L L    LQ   P  F+ + +L+ L L  N L+  
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 307 IPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGR 366
               F ++ +L  L+L  N++S       + L       SL+ L L+ N +    P   R
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH------SLDRLLLHQNRVAHVHPHAFR 198

Query: 367 FLSLKVLKLG-ENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLA 425
            L   +      N+L+    ++L+ L  L+ L L+ N +            + LQ    +
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGS 256

Query: 426 DNSLT 430
            + + 
Sbjct: 257 SSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 9e-08
 Identities = 44/264 (16%), Positives = 69/264 (26%), Gaps = 28/264 (10%)

Query: 579 GFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRL 638
           G     Q + L  NR++    +S + C  L +L L  N L         G      +   
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 639 KSNNFHGNIPFQLCHLAFIQVLDLSLNNISG-KIPKCFSNFSMMIQEKSSNPIIGLANEI 697
            +       P     L  +  L L    +            ++       N +  L    
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL---- 144

Query: 698 LVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTA 757
                       L                      +L L  N++          L  L  
Sbjct: 145 --PDDTFRDLGNLT---------------------HLFLHGNRISSVPERAFRGLHSLDR 181

Query: 758 LNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKI 817
           L L +N +  + P     L  L  L L  N+ S     +L+ L  L  L L+ N      
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 818 PLGTQLQSFNASVYAGNLELCGLP 841
                         + +   C LP
Sbjct: 242 RARPLWAWLQKFRGSSSEVPCSLP 265

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 41/242 (16%), Positives = 76/242 (31%), Gaps = 30/242 (12%)

Query: 467 LISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNF 526
              + +    IS      F      L  L L +N ++          +    +D+S N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 527 DGPIPPLPSNS----TFLNLSKNKFSGLP-DCWLNFNSLSILNLANNRFSGKIPDSMGFL 581
              + P   +       L+L +     L    +    +L  L L +N       D+   L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 582 HNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVP------------------ 623
            N+  L L  NR++     + +    L  L L +N +    P                  
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 624 -----TCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNF 678
                T     L+ L  LRL  N +  +   +    A++Q    S + +   +P+  +  
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 679 SM 680
            +
Sbjct: 272 DL 273

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (155), Expect = 3e-11
 Identities = 63/467 (13%), Positives = 123/467 (26%), Gaps = 24/467 (5%)

Query: 189 SLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFI-WLFNLSTSIETLD 247
            ++ LD+ C  L+  + W +++  L   + + L  C L       I     ++ ++  L+
Sbjct: 3   DIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 248 LSDNHLPSSSVY---PWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELE 304
           L  N L    V+     L   S  I  L L    L G+        +         +  +
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 305 GGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDL 364
             +      +     L               +     C++++     L +     P    
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRL--------EKLQLEYCSLSAASCEPLASVLRAKPDFKE 173

Query: 365 GRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFL 424
               +  + + G   L   +  S   L  L+  S    S          ++ ++L+ L L
Sbjct: 174 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 233

Query: 425 ADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDW 484
             N L      +  P        L +  +           +    L         ++   
Sbjct: 234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 293

Query: 485 FWDLSIELFFLNLSNNHISGKLPDLS--VLKSDDIVIDISSNNFDGPIPPLPSNSTFLNL 542
                                          +       SS             S     
Sbjct: 294 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 353

Query: 543 SKNKFSGLPDCWLNFNSLSILNLANNRFSGK----IPDSMGFLHNIQTLSLRNNRLNGEL 598
                          + L +L LA+   S      +  ++   H+++ L L NN L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 599 PSSL-----KNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKS 640
              L     +    L  L L       E+   +    ++   LR+ S
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (140), Expect = 2e-09
 Identities = 61/452 (13%), Positives = 121/452 (26%), Gaps = 23/452 (5%)

Query: 368 LSLKVLKLGENHLNGT-INKSLSHLFKLETLSLDGNSFTGVISETF---FSNMSNLQMLF 423
           L ++ L +    L+     + L  L + + + LD    T    +           L  L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 424 LADNSLTLKLSHDWVPAFQ-----LKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGIS 478
           L  N L     H  +   Q     ++ LSL +C +       L +  + +          
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 479 DTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNST 538
           + + D    L  E                      S + +  +     D     + +N  
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 539 FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN-NRLNGE 597
                +    GL D      +L + +      + +    +              N+L   
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 598 LPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFI 657
             + L          LR   ++    T  G      ++   +S         +L      
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 658 QVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTW 717
            + +  L            + S      S    +   N  L+             V    
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 718 KGSEHEYKSTLGFVKYLDLSSNKL----CEAIPEEITDLVGLTALNLSRNNLTGLIPPKI 773
           +G           ++ L L+   +    C ++   +     L  L+LS N L      ++
Sbjct: 362 QGLGQPGSV----LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 774 GQ-----LKSLDFLDLSRNHFSGNIPSSLSLL 800
            +        L+ L L   ++S  +   L  L
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 2e-08
 Identities = 59/450 (13%), Positives = 114/450 (25%), Gaps = 36/450 (8%)

Query: 240 STSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG----SIPEAFQHMVSLRL 295
           S  I++LD+    L S + +  L  L +    + L    L       I  A +   +L  
Sbjct: 1   SLDIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 296 LSLASNELEGGIPKFFG-----NMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGL 350
           L+L SNEL                C + +L L    L+G    ++ +            L
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 351 CLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISE 410
                   G        L  +           +++ +          +        V + 
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 411 TFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISL 470
                   +    L D+   L+                    +                 
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 471 DISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPI 530
           D+    +   +      L     +         G L  +   K     + ++ N      
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 531 PPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSI---------------LNLANNRFSGKIP 575
             L   +      + +   +  C       S                ++      +G   
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 576 DSMGFLHN---IQTLSLRNNRLNGE----LPSSLKNCSKLRVLDLRKNALFGEVPTCVGG 628
              G       ++ L L +  ++      L ++L     LR LDL  N L       +  
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 629 SLQN----LIILRLKSNNFHGNIPFQLCHL 654
           S++     L  L L    +   +  +L  L
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 5e-07
 Identities = 58/443 (13%), Positives = 118/443 (26%), Gaps = 21/443 (4%)

Query: 394 LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQ----LKWLSLA 449
           +++L +     +          +   Q++ L D  LT     D   A +    L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 450 SCKMG----PHFPNWLQTQN-QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG 504
           S ++G          LQT + ++  L + N  ++             L  L   +   + 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 505 KLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILN 564
                  L  + ++                S ++   L+    +      L  ++  I  
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 565 LANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPT 624
                    + DS   L  ++  S      N      +             +   G+V  
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 625 CVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQE 684
                       RL++                 +VL    +     +             
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 685 KSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEA 744
             +    G   E L V    +      +       +    +  +   +  D    +LC+ 
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 745 IPEEITDLVGLTALNLSRNNLTGL----IPPKIGQLKSLDFLDLSRNHFSGNIPSSLS-- 798
           + +  +    L  L L+  +++      +   +    SL  LDLS N         L   
Sbjct: 364 LGQPGSV---LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 799 ---LLSGLSVLDLSYNSLSGKIP 818
                  L  L L     S ++ 
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 5e-07
 Identities = 61/464 (13%), Positives = 119/464 (25%), Gaps = 27/464 (5%)

Query: 166 EYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKS--SDWFQVVSQLHSLKTLVLRS 223
           +  +++   L      E L  L   + + L    LT++   D    +    +L  L LRS
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 224 CYLPPINPSFI--WLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG 281
             L  +    +   L   S  I+ L L +  L  +        L       +L  +    
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124

Query: 282 SIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSG 341
                      L        +L+          C      L       +    +   ++ 
Sbjct: 125 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE----LTVSNND 180

Query: 342 CTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG 401
                +  LC    D    +  L             +      +K+      L +  L  
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 402 NSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWL 461
                +       +     +                      +       K      N L
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-----LKELSLAGNEL 295

Query: 462 QTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDI 521
             +   +  +            W    S      +  ++ ++     L +  S++ + D 
Sbjct: 296 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355

Query: 522 SSNNFDGPIPPLPSNSTFLNLSKNKFSG-----LPDCWLNFNSLSILNLANNRFSGKIPD 576
                   +    S    L L+    S      L    L  +SL  L+L+NN        
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 577 SMG-----FLHNIQTLSLRNNRLNGELPSSL----KNCSKLRVL 611
            +          ++ L L +   + E+   L    K+   LRV+
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 7e-05
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 755 LTALNLSRNNLTGLIPPKI-GQLKSLDFLDLSRNHFSG----NIPSSLSLLSGLSVLDLS 809
           + +L++    L+     ++   L+    + L     +     +I S+L +   L+ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 810 YNSLSGKIP--LGTQLQSFNASVYAGNLELCG 839
            N L       +   LQ+ +  +   +L+ C 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 53/413 (12%), Positives = 106/413 (25%), Gaps = 17/413 (4%)

Query: 418 NLQMLFLADNSLTLKLSHDWVPAFQ-LKWLSLASCKMGP----HFPNWLQTQNQLISLDI 472
           ++Q L +    L+     + +P  Q  + + L  C +         + L+    L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 473 SNIGISDT----IPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDG 528
            +  + D     +       S ++  L+L N  ++G    +       +      +  D 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 529 PIPPLPSNSTF-LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL 587
            +            L                S +      +    K       + N    
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNI 647
                 L   L  S      L++      +        +  S  +L  L L SN      
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 648 PFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYF 707
             +LC         L    I            +    ++   +  L+     +       
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 708 RYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTG 767
                +    +      KS           S+ L +        +      +     L  
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 768 LIPPKIGQLKSLDFLDLSRNHFSGN----IPSSLSLLSGLSVLDLSYNSLSGK 816
            +      L+ L    L+    S +    + ++L     L  LDLS N L   
Sbjct: 363 GLGQPGSVLRVLW---LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 38/271 (14%), Positives = 82/271 (30%), Gaps = 13/271 (4%)

Query: 519 IDISSNNFDGPIPP--LPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGK-IP 575
           +D++  N    +    L          ++          +   +  ++L+N+      + 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64

Query: 576 DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII 635
             +     +Q LSL   RL+  + ++L   S L  L+L   + F E       S  + + 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124

Query: 636 LRLKSNNFHGNIPFQLCHLAFIQ------VLDLSLNNISGKIPKCFSNFSMMIQEKSSNP 689
               S  F          +A +        L     N+              +     + 
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184

Query: 690 IIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYK-STLGFVKYLDLSSNKLCEAIPEE 748
            + L N+       + Y ++L          E   +   +  +K L +        +   
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244

Query: 749 ITDLVGLTALNLSRNNLTGLIPPKIGQLKSL 779
                 L  L ++ ++ T +  P IG  K+ 
Sbjct: 245 KE---ALPHLQINCSHFTTIARPTIGNKKNQ 272

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 40/265 (15%), Positives = 82/265 (30%), Gaps = 15/265 (5%)

Query: 563 LNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPS-SLKNCSKLRVLDLRKNALFGE 621
           L+L         PD  G L +   ++ R  R   + P     +  +++ +DL  + +   
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 622 VPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLD------LSLNNISGKIPKCF 675
               +      L  L L+       I   L   + +  L+       S   +   +  C 
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLD 735
               + +          +   +  V   I             K            + +LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 736 LSSNKLC-EAIPEEITDLVGLTALNLSR-NNLTGLIPPKIGQLKSLDFLDLSRNHFSGNI 793
           LS + +      +E   L  L  L+LSR  ++      ++G++ +L  L +      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 794 PSSLSLLSGLSVLDLSYNSLSGKIP 818
                L   L  L ++ +  +    
Sbjct: 242 Q---LLKEALPHLQINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 3e-07
 Identities = 34/260 (13%), Positives = 80/260 (30%), Gaps = 14/260 (5%)

Query: 352 LYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISET 411
           L   ++   +        +   +   + ++  + +  S  F+++ + L  +         
Sbjct: 7   LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTLHG 65

Query: 412 FFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLD 471
             S  S LQ L L    L+  + +       L  L+L+ C  G          +    LD
Sbjct: 66  ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC-SGFSEFALQTLLSSCSRLD 124

Query: 472 ISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIP 531
             N+       +    +++      ++  ++SG                  S+       
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY-----------RKNLQKSDLSTLVRR 173

Query: 532 PLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLAN-NRFSGKIPDSMGFLHNIQTLSLR 590
                   L+ S    +     +   N L  L+L+       +    +G +  ++TL + 
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233

Query: 591 NNRLNGELPSSLKNCSKLRV 610
               +G L    +    L++
Sbjct: 234 GIVPDGTLQLLKEALPHLQI 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 8e-07
 Identities = 47/252 (18%), Positives = 82/252 (32%), Gaps = 6/252 (2%)

Query: 72  WRGVRCSNTTGHVKVLNLQTSDHEFARR--KFLKGKISPALLKLRGLRHLDLSKNDFGGS 129
           W+ +  +    H  V     S    A R  +    +          ++H+DLS +    S
Sbjct: 2   WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 130 PVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNV-ENSNLFSVGSLERLSHLS 188
            +   +   SKL+ L+L     S  I +     S     N+   S          LS  S
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 189 SLRHLDLS-CINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLD 247
            L  L+LS C + T+      V     ++  L L              L     ++  LD
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 248 LSDNHLPSSSVYPWLFNLSRNILHLDL-GFNHLQGSIPEAFQHMVSLRLLSLASNELEGG 306
           LSD+ +  +  +   F     + HL L     +          + +L+ L +     +G 
Sbjct: 182 LSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240

Query: 307 IPKFFGNMCSLN 318
           +      +  L 
Sbjct: 241 LQLLKEALPHLQ 252

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 43/240 (17%), Positives = 70/240 (29%), Gaps = 35/240 (14%)

Query: 551 PDCWL-NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLR 609
           P C +    S   +N      +  +P  +    +   L L  N L     ++L   ++L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 610 VLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISG 669
            L+L                           +            L  +  LDLS N +  
Sbjct: 59  QLNL---------------------------DRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 670 KIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLG 729
                 +  ++ + + S N +  L    L   G +       N L T           L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHF 789
            +     ++N L E     +  L  L  L L  N+L   IP        L F  L  N +
Sbjct: 152 KLSL---ANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 29/180 (16%), Positives = 48/180 (26%), Gaps = 8/180 (4%)

Query: 394 LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKM 453
              L L  N        T     + L  L L    LT       +P              
Sbjct: 33  TTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD----LSHN 87

Query: 454 GPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLK 513
                  L      +++   +     ++P        EL  L L  N +    P L    
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 514 SDDIVIDISSNNFDGPIPPLPSNSTF---LNLSKNKFSGLPDCWLNFNSLSILNLANNRF 570
                + +++NN       L +       L L +N    +P  +   + L    L  N +
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 31/209 (14%), Positives = 62/209 (29%), Gaps = 5/209 (2%)

Query: 387 SLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWL 446
            +S +     ++ D  + T +  +       +  +L L++N L        +P  +L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 447 SLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKL 506
           +L   ++     +        + L  + +     +      L++     N   +   G L
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 507 PDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLA 566
             L  L+   +  +       G + P P        + N             +L  L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 567 NNRFSGKIPDSMGFLHNIQTLSLRNNRLN 595
            N     IP      H +    L  N   
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 39/213 (18%), Positives = 66/213 (30%), Gaps = 10/213 (4%)

Query: 601 SLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVL 660
            +   +    ++  K  L   +P  +    ++  IL L  N  +      L     +  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 661 DLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGS 720
           +L                  +    + +        + ++   +     LD         
Sbjct: 61  NLD-----RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 721 EHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLD 780
                  LG ++ L L  N+L    P  +T    L  L+L+ NNLT L    +  L++LD
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 781 FLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSL 813
            L L  N     IP        L    L  N  
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 38/206 (18%), Positives = 61/206 (29%), Gaps = 23/206 (11%)

Query: 240 STSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLA 299
             S   ++    +L  +++ P   +L ++   L L  N L             L  L+L 
Sbjct: 9   VASHLEVNCDKRNL--TALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 300 SNE-LEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGL-------- 350
             E  +  +      + +L+  +     L      L        + N L  L        
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 351 ------CLYANDITGPIPDLGRFLSLKVL-KLGENHLNGTINKSLSHLFKLETLSLDGNS 403
                  L  N++    P L           L  N+L       L+ L  L+TL L  NS
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 404 FTGVISETFFSNMSNLQMLFLADNSL 429
              +    F      L   FL  N  
Sbjct: 184 LYTIPKGFF--GSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 4/179 (2%)

Query: 467 LISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNF 526
              L +S   +           +  L  LNL    ++    D ++     + +  +    
Sbjct: 33  TTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 527 DGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLS-ILNLANNRFSGKIPDSMGFLHNIQ 585
              +       T L++S N+ + LP   L        L L  N      P  +     ++
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 586 TLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH 644
            LSL NN L       L     L  L L++N+L+  +P    G    L    L  N + 
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 39/214 (18%), Positives = 58/214 (27%), Gaps = 37/214 (17%)

Query: 114 RGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENS 173
           +    L LS+N          +   ++L  LNL     +                     
Sbjct: 31  KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAELTKLQVDG--------------- 74

Query: 174 NLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSF 233
                        L  L  LDLS   L       Q +  L            +     + 
Sbjct: 75  ------------TLPVLGTLDLSHNQLQSLPLLGQTLPALT--------VLDVSFNRLTS 114

Query: 234 IWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSL 293
           + L  L    E  +L        ++ P L   +  +  L L  N+L          + +L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 294 RLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKL 327
             L L  N L   IPK F     L   +L  N  
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 9e-08
 Identities = 62/346 (17%), Positives = 104/346 (30%), Gaps = 30/346 (8%)

Query: 265 LSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPR 324
           L R    L+L    L  S+PE   H   L  L  + N L   +P+   +   L  L +  
Sbjct: 36  LDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTE-LPELPQS---LKSLLVDN 87

Query: 325 NKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTI 384
           N L   LS+L   L      N+         + +          SLK L      L    
Sbjct: 88  NNLKA-LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 385 NKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLK 444
             +       E  +L   +     + +          L        +      +      
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 445 WLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISG 504
               A   +    P+   +   L   D     + +      +    E  F  LS    + 
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 266

Query: 505 KLPDLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILN 564
              +             +S+N    +  LP +   LN+S NK   LP        L  L 
Sbjct: 267 YYLN-------------ASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLI 310

Query: 565 LANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRV 610
            + N  + ++P+      N++ L +  N L  E P   ++   LR+
Sbjct: 311 ASFNHLA-EVPELPQ---NLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 3e-07
 Identities = 49/316 (15%), Positives = 95/316 (30%), Gaps = 17/316 (5%)

Query: 518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDC-------WLNFNSLSILNLANNRF 570
            +++++      +P LP +   L  S N  + LP+         ++ N+L  L+      
Sbjct: 42  ELELNNLGLSS-LPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 100

Query: 571 SGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVG-GS 629
                 +       +  +    ++     +SLK    L        A   ++       +
Sbjct: 101 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQN 160

Query: 630 LQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNP 689
           L  L  +   +N+        L   + +   ++       +     +          + P
Sbjct: 161 LPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 220

Query: 690 IIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEI 749
            +  + E L V              LT+        S L  +       N     I    
Sbjct: 221 DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 280

Query: 750 TDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLS 809
                L  LN+S N L   +P    +L+ L     S NH +  +P    L   L  L + 
Sbjct: 281 DLPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNHLA-EVPE---LPQNLKQLHVE 332

Query: 810 YNSLSGKIPLGTQLQS 825
           YN L     +   ++ 
Sbjct: 333 YNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 53/333 (15%), Positives = 95/333 (28%), Gaps = 19/333 (5%)

Query: 239 LSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSL 298
           L      L+L++  L S      L  L  ++  L    N L   +PE  Q + SL + + 
Sbjct: 36  LDRQAHELELNNLGLSS------LPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNN 88

Query: 299 ASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDIT 358
               L    P       S NQL       +    ++I   ++           L      
Sbjct: 89  NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 359 GPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSN 418
               +    L            N ++ K       LE++    N    +        ++ 
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 419 LQMLFLADNSLTLKLSHDWVPAFQL----KWLSLASCKMGPHFPNWLQTQNQLISLDISN 474
           +        +L            +         L            + +    +  ++  
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 475 IGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLP 534
           +  S        DL   L  LN+SNN +         L+     +  S N+    +P LP
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE----RLIASFNHLAE-VPELP 323

Query: 535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLAN 567
            N   L++  N     PD      S+  L + +
Sbjct: 324 QNLKQLHVEYNPLREFPDI---PESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 51/339 (15%), Positives = 101/339 (29%), Gaps = 28/339 (8%)

Query: 464 QNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISS 523
             Q   L+++N+G+S ++P+    L      L  S N ++ +LP+L         + + +
Sbjct: 37  DRQAHELELNNLGLS-SLPELPPHLES----LVASCNSLT-ELPELP---QSLKSLLVDN 87

Query: 524 NNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHN 583
           NN        P       L     S      L     S      +  +  +        +
Sbjct: 88  NNLKALSDLPPL------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 141

Query: 584 IQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNF 643
           ++ ++  NN+L                 D        ++P  +   +    I        
Sbjct: 142 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI---LEELP 198

Query: 644 HGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGY 703
                  L  +     L  +L ++   +       + +         +   +    +   
Sbjct: 199 ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258

Query: 704 IYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRN 763
           +         L                ++ L++S+NKL E +P        L  L  S N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFN 314

Query: 764 NLTGLIPPKIGQLKSLDFLDLSRNHFSG--NIPSSLSLL 800
           +L   +P     LK    L +  N      +IP S+  L
Sbjct: 315 HLAE-VPELPQNLKQ---LHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 55/328 (16%), Positives = 102/328 (31%), Gaps = 28/328 (8%)

Query: 342 CTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDG 401
           C       L L    ++  +P+L     L+ L    N L   + +    L  L   + + 
Sbjct: 35  CLDRQAHELELNNLGLSS-LPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNL 90

Query: 402 NSFTGVISETFFSNMSNLQMLFLAD-----NSLTLKLSHDWVPAFQLKWLSLASCKMGPH 456
            + + +     +  +SN Q+  L +         + + ++ +        SL     G +
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 457 FPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDD 516
               L     L  L       +         LS+E      +      +L +L  L +  
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 517 IVIDISSNNFDGPIPP--------LPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANN 568
              ++     D P             ++   L  S        + +   + L       N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 569 RFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGG 628
             S +I        +++ L++ NN+L  ELP+       L  L    N L       V  
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-----AEVPE 321

Query: 629 SLQNLIILRLKSNNFHG--NIPFQLCHL 654
             QNL  L ++ N      +IP  +  L
Sbjct: 322 LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 35/326 (10%), Positives = 87/326 (26%), Gaps = 28/326 (8%)

Query: 539 FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGK----IPDSMGFLHNIQTLSLRNNRL 594
              ++      +    L  +S+  + L+ N    +    + +++    +++     +   
Sbjct: 12  LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 595 N----------GELPSSLKNCSKLRVLDLRKNALFGE---VPTCVGGSLQNLIILRLKSN 641
                        L  +L  C KL  + L  NA                  L  L L +N
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 642 NFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVP 701
                   ++        ++    N             +             ++ +L   
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191

Query: 702 GYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLS 761
             +      + +           +         +  ++    A+   +     L  L L+
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 762 RNNLTGLIPPKIGQ------LKSLDFLDLSRNHFSGNIPSSL-----SLLSGLSVLDLSY 810
              L+      +           L  L L  N    +   +L       +  L  L+L+ 
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 811 NSLSGKIPLGTQLQSFNASVYAGNLE 836
           N  S +  +  +++   ++   G L+
Sbjct: 312 NRFSEEDDVVDEIREVFSTRGRGELD 337

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 2e-04
 Identities = 39/317 (12%), Positives = 87/317 (27%), Gaps = 24/317 (7%)

Query: 106 ISPALLKLRGLRHLDLSKNDFGG---SPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDL 162
           +   LL+   ++ + LS N  G      + E I S   L     S              L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 163 SGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLR 222
                  ++   L +V   +     ++   L       T     +   + L         
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA---GA 139

Query: 223 SCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSS-----------VYPWLFNLSRNILH 271
                    +       +  + ++    N L + S                  + +N + 
Sbjct: 140 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 199

Query: 272 LDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQL 331
            +   + L   +    +  V     +  ++     +     +  +L +L L    LS + 
Sbjct: 200 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 259

Query: 332 SELIQNLSSGCTVNSLEGLCLYANDITGPIPD------LGRFLSLKVLKLGENHLNGTIN 385
           +  + +  S      L+ L L  N+I              +   L  L+L  N      +
Sbjct: 260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEED 318

Query: 386 KSLSHLFKLETLSLDGN 402
             +  + ++ +    G 
Sbjct: 319 DVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 33/308 (10%), Positives = 83/308 (26%), Gaps = 33/308 (10%)

Query: 368 LSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETF---FSNMSNLQMLFL 424
            SLK+  +       ++   L     ++ + L GN+     +       ++  +L++   
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 425 ADNSL-------------------TLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQN 465
           +D                           H    +      +     +     +      
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 466 QLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNN 525
            L +  +     +            +          I      L      +      S+ 
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 526 FDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQ 585
               +  + +      +      GL  C          N   +  S  +  ++    N++
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 586 TLSLRNNRLNGELPSSLKNC------SKLRVLDLRKNALFGE----VPTCVGGSLQNLII 635
            L L +  L+    +++ +         L+ L L+ N +  +    + T +   + +L+ 
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 636 LRLKSNNF 643
           L L  N F
Sbjct: 307 LELNGNRF 314

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 38/235 (16%), Positives = 73/235 (31%), Gaps = 17/235 (7%)

Query: 357 ITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNM 416
           I    PD     +   +  G++++  T+  + + L  + TLS  G   T +        +
Sbjct: 9   INVIFPDPA-LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI---EGVQYL 62

Query: 417 SNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIG 476
           +NL  L L DN +T       +       LS    K           +   ++       
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 477 ISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPSN 536
                      L ++L  +   +            + +  +       N           
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS--------K 174

Query: 537 STFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRN 591
            T L    NK S +     +  +L  ++L NN+ S   P  +    N+  ++L N
Sbjct: 175 LTTLKADDNKISDISPLA-SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 2e-06
 Identities = 35/228 (15%), Positives = 67/228 (29%), Gaps = 4/228 (1%)

Query: 559 SLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL 618
           S  +     ++ + +IP       N   L     +L      +      L  +++ +N +
Sbjct: 9   SNRVFLCQESKVT-EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 619 FGEVPTCVGGSLQNLII-LRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSN 677
              +   V  +L  L      K+NN     P    +L  +Q L +S   I         +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 678 FSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLS 737
               +     + I     E     G  +    L       +   +   +     +     
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 738 SNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLS 785
           +N L E   +      G   L++SR  +  L    +  LK L      
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 34/224 (15%), Positives = 60/224 (26%), Gaps = 20/224 (8%)

Query: 394 LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKM 453
              L         +    F S   +L+ + ++ N +   +  D                 
Sbjct: 31  AIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89

Query: 454 GPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLK 513
              + N    QN                        + +    + +     K+  L  + 
Sbjct: 90  NLLYINPEAFQN------------------LPNLQYLLISNTGIKHLPDVHKIHSLQKVL 131

Query: 514 SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGK 573
            D                 L   S  L L+KN    + +C  N   L  LNL++N    +
Sbjct: 132 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEE 191

Query: 574 IP-DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKN 616
           +P D          L +   R++      L+N  KLR       
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 4/144 (2%)

Query: 541 NLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPS 600
            L   +   L          S   L       +    +   +    L+ R++     L  
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAA-TLRI 59

Query: 601 SLKNCSKLRVLDLRKNALFG-EVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQV 659
             +N  +L  L+L  N L+  +  + +     NL IL L  N               ++ 
Sbjct: 60  IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119

Query: 660 LDLSLNNISGKIPKCFSNFSMMIQ 683
           L L  N++S       +  S + +
Sbjct: 120 LWLDGNSLSDTFRDQSTYISAIRE 143

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 518 VIDISSNNFDGPIPPLP--SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIP 575
           V+ ++  +    +  L      T L+LS N+   LP        L +L    +  + +  
Sbjct: 2   VLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ--ASDNALENV 58

Query: 576 DSMGFLHNIQTLSLRNNRLNG-ELPSSLKNCSKLRVLDLRKNAL 618
           D +  L  +Q L L NNRL        L +C +L +L+L+ N+L
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 108 PALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEY 167
             L +L  + HLDLS N      +P  + +L  L  L       + +      +L   + 
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQ--ASDNALENVDGVANLPRLQE 69

Query: 168 FNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWF-QVVSQLHSLKTLV 220
             + N+ L    +++ L     L  L+L   +L +      ++   L S+ +++
Sbjct: 70  LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 9/102 (8%)

Query: 180 SLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNL 239
            L  L  L  + HLDLS   L         +  L  L+        +  +          
Sbjct: 12  VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPR----- 66

Query: 240 STSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG 281
              ++ L L +N L  S+    L +    ++ L+L  N L  
Sbjct: 67  ---LQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 26/117 (22%)

Query: 732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDF---------- 781
           + L L+   L   +   +  L+ +T L+LS N L   +PP +  L+ L+           
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN 57

Query: 782 ------------LDLSRNHF-SGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQS 825
                       L L  N          L     L +L+L  NSL  +  +  +L  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 13/133 (9%)

Query: 294 RLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLY 353
           R+L LA  +L   +      +  +  L L  N+L       +  L     +         
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQ-------A 50

Query: 354 ANDITGPIPDLGRFLSLKVLKLGENHLNGTIN-KSLSHLFKLETLSLDGNSFTGV--ISE 410
           +++    +  +     L+ L L  N L  +   + L    +L  L+L GNS      I E
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 411 TFFSNMSNLQMLF 423
                + ++  + 
Sbjct: 111 RLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 8e-04
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 470 LDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGP 529
           L +++  +  T+      L   +  L+LS+N +    P L+ L+  +++    +   +  
Sbjct: 3   LHLAHKDL--TVLCHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 530 IPPLPSNSTFLNLSKNKFSGLPD--CWLNFNSLSILNLANNRFSGK 573
                     L L  N+          ++   L +LNL  N    +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 495 LNLSNNHISGKLPDLSVLKSDDIVIDISSNNFDGPIPPLPS--NSTFLNLSKNKFSGLPD 552
           L+L++  ++  L  L  L      +D+S N      P L +      L  S N    +  
Sbjct: 3   LHLAHKDLT-VLCHLEQLLLV-THLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 553 CWLNFNSLSILNLANNRF-SGKIPDSMGFLHNIQTLSLRNNRLNGE 597
              N   L  L L NNR         +     +  L+L+ N L  E
Sbjct: 61  VA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELP 599
           L+L+    + L         ++ L+L++NR     P ++  L  ++ L   +N L     
Sbjct: 3   LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN--V 58

Query: 600 SSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHG 645
             + N  +L+ L L  N L          S   L++L L+ N+   
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 10/111 (9%)

Query: 320 LYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENH 379
           L+L    L+         L     +  +  L L  N +    P L     L+VL+   + 
Sbjct: 3   LHLAHKDLT--------VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA--SD 52

Query: 380 LNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLT 430
                   +++L +L+ L L  N      +     +   L +L L  NSL 
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 19/221 (8%)

Query: 352 LYANDITGPIP-----DLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTG 406
           L +  IT P P         F       L +  +   +  + + L  ++ +  + +    
Sbjct: 3   LGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS 60

Query: 407 VISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQ 466
           V        + N+  LFL  N LT       +      +L     K      +  + ++ 
Sbjct: 61  VQG---IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117

Query: 467 LISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLKSDDIVIDISSNNF 526
                 S      +  +    L         +N      +           + D   ++ 
Sbjct: 118 ------SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 171

Query: 527 DGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLAN 567
             P+  L      L LSKN  S L        +L +L L +
Sbjct: 172 V-PLAGLT-KLQNLYLSKNHISDLRALA-GLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 34/209 (16%), Positives = 69/209 (33%), Gaps = 19/209 (9%)

Query: 601 SLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVL 660
           S    ++    +L+K ++   V       L ++  +   +++       Q  +L  +  L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQ--YLPNVTKL 73

Query: 661 DLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGS 720
            L+ N ++    K  +N   +         +                      L      
Sbjct: 74  FLNGNKLTD--IKPLANLKNLGWLFLDENKV--------KDLSSLKDLKKLKSLSLEHNG 123

Query: 721 EHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLD 780
             +    +   +   L            ++ L  L  L+L  N ++ ++P  +  L  L 
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181

Query: 781 FLDLSRNHFSGNIPSSLSLLSGLSVLDLS 809
            L LS+NH S     +L+ L  L VL+L 
Sbjct: 182 NLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 26/154 (16%), Positives = 52/154 (33%), Gaps = 2/154 (1%)

Query: 394 LETLSLDGNSFTGVISETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKM 453
              L L+ N    + S+  F  + +L  L L  N LT    + +  A  ++ L L   K+
Sbjct: 31  TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 454 GPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLPDLSVLK 513
                      +QL +L++ +  IS  +P  F    +         ++       L+   
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE--HLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 514 SDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKF 547
                  ++        P    +    +L  ++F
Sbjct: 149 EWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 12/152 (7%)

Query: 369 SLKVLKLGENHLNGTINK------SLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQML 422
           S+   +  +  L+G I        +LS L   + L+L  N+   + S    S M NL++L
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS---LSGMENLRIL 75

Query: 423 FLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIP 482
            L  N        + + A       L          + ++    L  L +SN  I++   
Sbjct: 76  SLGRNL---IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE 132

Query: 483 DWFWDLSIELFFLNLSNNHISGKLPDLSVLKS 514
                   +L  L L+ N +     + +    
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 105 KISPALLKLRGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSG 164
            I      L     +D S N+       +    L +L+ L ++            + L  
Sbjct: 32  VIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 88

Query: 165 FEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDW-FQVVSQLHSLKTL 219
                + N++L  +G L+ L+ L SL +L +    +T    +   V+ ++  ++ L
Sbjct: 89  LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	927
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.45
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.55
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.39

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.4e-38  Score=342.57  Aligned_cols=294  Identities=26%  Similarity=0.415  Sum_probs=193.4

Q ss_pred             CCCHHHHHHHHHhhhcCcCCCCCcCCCCCCCCCCCCcc--ccceeecCCC--CCEEEEECCCCchhhhhcccccc--ccC
Q 047797           34 RCIDEEREALLTFKQSLVDEYGVLSSWGSEDGKRDCCK--WRGVRCSNTT--GHVKVLNLQTSDHEFARRKFLKG--KIS  107 (927)
Q Consensus        34 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~l~g--~~~  107 (927)
                      .|.++|++||++||+++.||. .+++|.   .++|||.  |+||+|+..+  +||++|+|++        +.+.|  .+|
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~---~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~--------~~l~g~~~lp   69 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPIP   69 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------CCCSSCEECC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCC---CCCCCCCCcCCCeEEeCCCCcEEEEEEECCC--------CCCCCCCCCC
Confidence            699999999999999999875 689997   4789995  9999998644  4899999998        67777  577


Q ss_pred             ccccCCCCCCeeeCCC-CCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccC
Q 047797          108 PALLKLRGLRHLDLSK-NDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSH  186 (927)
Q Consensus       108 ~~l~~l~~L~~L~Ls~-n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~  186 (927)
                      ++++++++|++|||++ |.+++. +|..++++++|++|+|++|++.+..|..+.++..|++++++.|..           
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~-----------  137 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-----------  137 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-----------
T ss_pred             hHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccc-----------
Confidence            8888888888888886 677775 888888888888888888877776665555555555555433322           


Q ss_pred             CCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCCCCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcc
Q 047797          187 LSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPPINPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLS  266 (927)
Q Consensus       187 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~  266 (927)
                                                              .+..|  ..+.++ +.++++++++|.+.+ .+|..+..+.
T Consensus       138 ----------------------------------------~~~~p--~~l~~l-~~L~~l~l~~n~l~~-~ip~~~~~l~  173 (313)
T d1ogqa_         138 ----------------------------------------SGTLP--PSISSL-PNLVGITFDGNRISG-AIPDSYGSFS  173 (313)
T ss_dssp             ----------------------------------------ESCCC--GGGGGC-TTCCEEECCSSCCEE-ECCGGGGCCC
T ss_pred             ----------------------------------------cccCc--hhhccC-cccceeecccccccc-cccccccccc
Confidence                                                    11122  223333 444555555555444 4455444444


Q ss_pred             cCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCC
Q 047797          267 RNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNS  346 (927)
Q Consensus       267 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~  346 (927)
                      ..++.+++++|++++..|..+..+..+ .++++.+...+.+|..+..+++++.+++++|.+                   
T Consensus       174 ~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l-------------------  233 (313)
T d1ogqa_         174 KLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-------------------  233 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-------------------
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc-------------------
Confidence            233555666665555555555544333 455555555555555555555455554444444                   


Q ss_pred             ccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccC
Q 047797          347 LEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLAD  426 (927)
Q Consensus       347 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  426 (927)
                                 .+.++.++.+++|++|++++|+++|.+|..++++++|++|+|++|+++|.+|.  ++++++|+.+++++
T Consensus       234 -----------~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         234 -----------AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYAN  300 (313)
T ss_dssp             -----------CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCS
T ss_pred             -----------cccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHHhCC
Confidence                       44444455556777777777777777777777777777777777777777764  45666666666766


Q ss_pred             Cc
Q 047797          427 NS  428 (927)
Q Consensus       427 n~  428 (927)
                      |+
T Consensus       301 N~  302 (313)
T d1ogqa_         301 NK  302 (313)
T ss_dssp             SS
T ss_pred             Cc
Confidence            65

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.8e-31  Score=286.46  Aligned_cols=257  Identities=32%  Similarity=0.539  Sum_probs=237.8

Q ss_pred             CCceEeCcCCCCCC---CCcccccCCCCCEEEccC-ccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEE
Q 047797          536 NSTFLNLSKNKFSG---LPDCWLNFNSLSILNLAN-NRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVL  611 (927)
Q Consensus       536 ~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  611 (927)
                      .++.|+|++|.+++   +|..+.++++|++|+|++ |.++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            57888899988886   789999999999999997 89999999999999999999999999999999999999999999


Q ss_pred             ecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCC-CEEEccccccccccchhhccccccccccCCCCc
Q 047797          612 DLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFI-QVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPI  690 (927)
Q Consensus       612 ~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~  690 (927)
                      ++++|.+.+.+|..+. .++.|+++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..          
T Consensus       131 ~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~----------  199 (313)
T d1ogqa_         131 DFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL----------  199 (313)
T ss_dssp             ECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC----------
T ss_pred             ccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc----------
Confidence            9999999999999987 79999999999999999999999988886 89999999999988877765432          


Q ss_pred             cccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCC
Q 047797          691 IGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIP  770 (927)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  770 (927)
                                                               ..++++++...+.+|..+..+++++.+++++|.+++.+|
T Consensus       200 -----------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~  238 (313)
T d1ogqa_         200 -----------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG  238 (313)
T ss_dssp             -----------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred             -----------------------------------------ccccccccccccccccccccccccccccccccccccccc
Confidence                                                     569999999999999999999999999999999998765


Q ss_pred             ccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCcccccCCCCCCCCCCCCCCC
Q 047797          771 PKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFNASVYAGNLELCGLPLPNKC  846 (927)
Q Consensus       771 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~C  846 (927)
                       .++.+++|+.|||++|+++|.+|..++++++|++|||++|+++|.+|..+.++.++...+.||+.+||.|++ .|
T Consensus       239 -~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         239 -KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             -GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             -ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence             688899999999999999999999999999999999999999999998888889999999999999999875 56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=6.2e-26  Score=250.97  Aligned_cols=193  Identities=27%  Similarity=0.415  Sum_probs=148.3

Q ss_pred             cccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCc
Q 047797          552 DCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQ  631 (927)
Q Consensus       552 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~  631 (927)
                      ..+..+++++.+++++|.+++..|  +...++|++|++++|+++..  ..+..+++|+.|++++|++++..+  +. .++
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~~~  263 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS-GLT  263 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-TCT
T ss_pred             cccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--cc-ccc
Confidence            455677788888888888876544  45567888888888888742  357778888888888888855333  33 578


Q ss_pred             cCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecc
Q 047797          632 NLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLD  711 (927)
Q Consensus       632 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (927)
                      +|++|++++|++++..  .+..++.++.+++++|.+++..  .+..                                  
T Consensus       264 ~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~--~~~~----------------------------------  305 (384)
T d2omza2         264 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--PISN----------------------------------  305 (384)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG--GGGG----------------------------------
T ss_pred             cCCEeeccCcccCCCC--cccccccccccccccccccccc--ccch----------------------------------
Confidence            8888888888887543  3667888888888888887421  2222                                  


Q ss_pred             eeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcc
Q 047797          712 NVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSG  791 (927)
Q Consensus       712 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  791 (927)
                                      ++.++.|++++|++++..+  +..+++|++|++++|++++.  +.++++++|++||+++|++++
T Consensus       306 ----------------~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l--~~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         306 ----------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             ----------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCB
T ss_pred             ----------------hcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC--hhHcCCCCCCEEECCCCcCCC
Confidence                            3345889999999988643  78899999999999999864  468899999999999999997


Q ss_pred             cCCccccCCCCCCeEeCcCC
Q 047797          792 NIPSSLSLLSGLSVLDLSYN  811 (927)
Q Consensus       792 ~~p~~l~~l~~L~~L~ls~N  811 (927)
                      ..|  +.++++|++|+|++|
T Consensus       366 l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         366 LTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CGG--GTTCTTCSEEECCCE
T ss_pred             Chh--hccCCCCCEeeCCCC
Confidence            655  888999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=7e-25  Score=242.40  Aligned_cols=167  Identities=26%  Similarity=0.406  Sum_probs=101.6

Q ss_pred             cCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcE
Q 047797          556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII  635 (927)
Q Consensus       556 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~  635 (927)
                      .+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..+  +..+++|++|++++|++.+ ++. +. .++.++.
T Consensus       217 ~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~-~~~-~~-~~~~l~~  289 (384)
T d2omza2         217 ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LA-GLTALTN  289 (384)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GT-TCTTCSE
T ss_pred             ccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCC-CCc-cc-ccccccc
Confidence            344555555555555431  234555566666666665554322  5556666666666666633 222 22 4566666


Q ss_pred             EEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEE
Q 047797          636 LRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLL  715 (927)
Q Consensus       636 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (927)
                      ++++.|.+.+.  ..+..+++++.|++++|++++..+  +..                                      
T Consensus       290 l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~--------------------------------------  327 (384)
T d2omza2         290 LELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSS--------------------------------------  327 (384)
T ss_dssp             EECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGG--------------------------------------
T ss_pred             ccccccccccc--cccchhcccCeEECCCCCCCCCcc--ccc--------------------------------------
Confidence            66666666542  235666777777777777765322  333                                      


Q ss_pred             eeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCC
Q 047797          716 TWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRN  787 (927)
Q Consensus       716 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  787 (927)
                                  +++|+.|++++|++++ ++ .++++++|++|++++|++++.+|  +.++++|+.|+|++|
T Consensus       328 ------------l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         328 ------------LTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ------------CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ------------CCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence                        2344777777777765 33 57778888888888888887644  778888888888877

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6e-26  Score=239.16  Aligned_cols=237  Identities=22%  Similarity=0.167  Sum_probs=193.8

Q ss_pred             eEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcC
Q 047797          539 FLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNAL  618 (927)
Q Consensus       539 ~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  618 (927)
                      .++.++++++.+|..+.  +++++|+|++|+|+...+.+|.++++|++|++++|++.+..+..+..++.++.++...+..
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            45566667777776553  5678888888888877667788888888888888888888888888888888887754433


Q ss_pred             CCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccc
Q 047797          619 FGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEIL  698 (927)
Q Consensus       619 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~  698 (927)
                      ...++...+..+++|++|++++|.+....+..+...++|+.+++++|++++..+..|..++.                  
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~------------------  154 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN------------------  154 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------------------
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccc------------------
Confidence            34454333347888999999998888777777888889999999999998766666655444                  


Q ss_pred             cccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCC
Q 047797          699 VVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKS  778 (927)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  778 (927)
                                                      |+.|++++|++++..+..|.++++|+.+++++|++++..|..|.++++
T Consensus       155 --------------------------------L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         155 --------------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             --------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             --------------------------------hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence                                            489999999999999999999999999999999999999999999999


Q ss_pred             CCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCCCcCCCCc
Q 047797          779 LDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLGTQLQSFN  827 (927)
Q Consensus       779 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~  827 (927)
                      |++||+++|++.+..|..|+.+++|++|++++|++.|.|+..+...++.
T Consensus       203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~  251 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ  251 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred             cccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHH
Confidence            9999999999999888999999999999999999999998654433443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.5e-22  Score=215.50  Aligned_cols=268  Identities=20%  Similarity=0.203  Sum_probs=147.2

Q ss_pred             ccccceeecCCCCCEEEEECCCCchhhhhccccccccCccccCCCCCCeeeCCCCCCCCCCCC-ccccCCCCCCEEECCC
Q 047797           70 CKWRGVRCSNTTGHVKVLNLQTSDHEFARRKFLKGKISPALLKLRGLRHLDLSKNDFGGSPVP-EFIGSLSKLRYLNLSC  148 (927)
Q Consensus        70 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~lp-~~l~~l~~L~~L~Ls~  148 (927)
                      |.|++|.|.+                    .+++ ++|+.+.  +.+++|+|++|.++.  +| ..|.++++|++|++++
T Consensus        10 c~~~~~~C~~--------------------~~L~-~lP~~l~--~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~   64 (305)
T d1xkua_          10 CHLRVVQCSD--------------------LGLE-KVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILIN   64 (305)
T ss_dssp             EETTEEECTT--------------------SCCC-SCCCSCC--TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCS
T ss_pred             ecCCEEEecC--------------------CCCC-ccCCCCC--CCCCEEECcCCcCCC--cChhHhhcccccccccccc
Confidence            7899999963                    2233 4565553  689999999999987  55 4789999999999999


Q ss_pred             CCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECCCccCCCCCchHHhhcCCCCCCEEEcCCCCCCC
Q 047797          149 GTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLSCINLTKSSDWFQVVSQLHSLKTLVLRSCYLPP  228 (927)
Q Consensus       149 n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~  228 (927)
                      |.+....|..|+++++|++|++++|++...+.    .....++.|+++.|.+.....  ..+.....++.++...+....
T Consensus        65 n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~----~~~~~l~~L~~~~n~l~~l~~--~~~~~~~~~~~l~~~~n~~~~  138 (305)
T d1xkua_          65 NKISKISPGAFAPLVKLERLYLSKNQLKELPE----KMPKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKS  138 (305)
T ss_dssp             SCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS----SCCTTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCG
T ss_pred             ccccccchhhhhCCCccCEecccCCccCcCcc----chhhhhhhhhccccchhhhhh--hhhhccccccccccccccccc
Confidence            99998888889999999999998887654432    223456666666665554321  223334444444444433221


Q ss_pred             CCCchhhccccccCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCc
Q 047797          229 INPSFIWLFNLSTSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIP  308 (927)
Q Consensus       229 ~~~~~~~l~~~~~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p  308 (927)
                      .......+..+ +                          +|+.+++++|.+.. +|..  .+++|++|++++|...+..+
T Consensus       139 ~~~~~~~~~~l-~--------------------------~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         139 SGIENGAFQGM-K--------------------------KLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             GGBCTTGGGGC-T--------------------------TCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECT
T ss_pred             cCCCccccccc-c--------------------------ccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCCh
Confidence            11100111122 3                          44444444444332 2211  13444444444444444444


Q ss_pred             ccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhh
Q 047797          309 KFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSL  388 (927)
Q Consensus       309 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  388 (927)
                      ..|.+++.+++|++++|.+++..+.++..++      +|++|+|++|+++...+.+..+++|++|+|++|+|+......|
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~------~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTP------HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGST------TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             hHhhccccccccccccccccccccccccccc------cceeeecccccccccccccccccCCCEEECCCCccCccChhhc
Confidence            4444444455555555444444444444444      4444444444444332225555555555555555554322222


Q ss_pred             ------hccCCCCEEecCCccc
Q 047797          389 ------SHLFKLETLSLDGNSF  404 (927)
Q Consensus       389 ------~~l~~L~~L~L~~n~l  404 (927)
                            ..+.+|+.|++++|++
T Consensus       263 ~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         263 CPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             SCSSCCTTSCCCSEEECCSSSS
T ss_pred             cCcchhcccCCCCEEECCCCcC
Confidence                  2344555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=221.80  Aligned_cols=251  Identities=22%  Similarity=0.266  Sum_probs=210.5

Q ss_pred             EEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCCCcccccCcccEEEcc-ccccc
Q 047797          518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLR-NNRLN  595 (927)
Q Consensus       518 ~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~  595 (927)
                      .++.++++++......+.++++|+|++|+|+.+|. .|.++++|++|++++|++.+..+..+..+..++.++.. .|.+.
T Consensus        15 ~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             EEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             EEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            34555555554333456789999999999999774 68899999999999999999988899999999998875 56787


Q ss_pred             ccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhh
Q 047797          596 GELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCF  675 (927)
Q Consensus       596 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  675 (927)
                      ...+..|.++++|++|++++|.+....+..+. ..++|+.+++++|++++..+..+..+++|+.|++++|++++..+..|
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f  173 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             cccchhhcccccCCEEecCCcccccccccccc-hhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhh
Confidence            77788999999999999999999554444444 78999999999999998878889999999999999999998777777


Q ss_pred             ccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCC
Q 047797          676 SNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGL  755 (927)
Q Consensus       676 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L  755 (927)
                      .+++.+                                                  +.+++++|++++..|..|.++++|
T Consensus       174 ~~l~~L--------------------------------------------------~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         174 RGLHSL--------------------------------------------------DRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             TTCTTC--------------------------------------------------CEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cccccc--------------------------------------------------chhhhhhccccccChhHhhhhhhc
Confidence            765554                                                  999999999999999999999999


Q ss_pred             CEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCcccCCCC
Q 047797          756 TALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLSGKIPLG  820 (927)
Q Consensus       756 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  820 (927)
                      ++|++++|++++..|..|+.+++|++|++++|++.+.-+.. .-...++.+....+++.|..|..
T Consensus       204 ~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             ccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchH
Confidence            99999999999999999999999999999999998653321 11124566777888899887753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3.3e-22  Score=212.82  Aligned_cols=241  Identities=24%  Similarity=0.335  Sum_probs=156.5

Q ss_pred             CcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccc
Q 047797          516 DIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRL  594 (927)
Q Consensus       516 l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  594 (927)
                      .+.++-++++++..++..++++++|++++|+|+.+|+ .|.++++|++|++++|.+....|..|.++++|++|++++|++
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            4455666666665444456788888888888888775 678888888888888888877788888888888888888888


Q ss_pred             cccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccc--eecCccccCCCCCCEEEccccccccccc
Q 047797          595 NGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFH--GNIPFQLCHLAFIQVLDLSLNNISGKIP  672 (927)
Q Consensus       595 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  672 (927)
                      +. +|..+  ...++.|++++|.+.+ ++.........++.++...|...  ...+..+..+++|+.+++++|+++. +|
T Consensus        92 ~~-l~~~~--~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~  166 (305)
T d1xkua_          92 KE-LPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IP  166 (305)
T ss_dssp             SB-CCSSC--CTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CC
T ss_pred             Cc-Cccch--hhhhhhhhccccchhh-hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cC
Confidence            74 44332  3578888888888843 44444435677777887777543  3345567778888888888887763 22


Q ss_pred             hhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccc
Q 047797          673 KCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDL  752 (927)
Q Consensus       673 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l  752 (927)
                      ..+                                                    +++++.|++++|.+++.++..|.++
T Consensus       167 ~~~----------------------------------------------------~~~L~~L~l~~n~~~~~~~~~~~~~  194 (305)
T d1xkua_         167 QGL----------------------------------------------------PPSLTELHLDGNKITKVDAASLKGL  194 (305)
T ss_dssp             SSC----------------------------------------------------CTTCSEEECTTSCCCEECTGGGTTC
T ss_pred             ccc----------------------------------------------------CCccCEEECCCCcCCCCChhHhhcc
Confidence            211                                                    1223555555555555555555555


Q ss_pred             cCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCCcCc
Q 047797          753 VGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYNSLS  814 (927)
Q Consensus       753 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  814 (927)
                      +.+++|++++|++++..+..+.++++|++|+|++|+|+ .+|..+..+++|++|++++|+++
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            55555555555555555555555555555555555555 34555555555555555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4e-23  Score=214.73  Aligned_cols=205  Identities=24%  Similarity=0.252  Sum_probs=150.0

Q ss_pred             CCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEE
Q 047797          558 NSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILR  637 (927)
Q Consensus       558 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~  637 (927)
                      ..+.+++.+++.++ .+|..+.  +++++|+|++|+|++..+..|.++++|++|+|++|+++ .+|.. . .+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~-~-~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-G-TLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-S-CCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc-c-ccccccccc
Confidence            34444555555555 2344332  35666666666666555555666666666666666663 33322 2 466777777


Q ss_pred             ccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEee
Q 047797          638 LKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTW  717 (927)
Q Consensus       638 L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  717 (927)
                      +++|++++ .+..+.++++|+.|++++|.+.+..+..+..+.                                      
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--------------------------------------  124 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--------------------------------------  124 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT--------------------------------------
T ss_pred             cccccccc-cccccccccccccccccccccceeecccccccc--------------------------------------
Confidence            77777663 355667778888888888887765554444333                                      


Q ss_pred             ecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccc
Q 047797          718 KGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSL  797 (927)
Q Consensus       718 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  797 (927)
                                  +++.|++++|.++...+..+..+++|+.|++++|++++..+..|..+++|++|||++|+|+ .+|.++
T Consensus       125 ------------~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~  191 (266)
T d1p9ag_         125 ------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (266)
T ss_dssp             ------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             ------------ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhH
Confidence                        3488899999998888888889999999999999999988889999999999999999999 788888


Q ss_pred             cCCCCCCeEeCcCCcCcccCCCC
Q 047797          798 SLLSGLSVLDLSYNSLSGKIPLG  820 (927)
Q Consensus       798 ~~l~~L~~L~ls~N~l~~~~p~~  820 (927)
                      ..+++|+.|+|++|+|.|.|...
T Consensus       192 ~~~~~L~~L~L~~Np~~CdC~~~  214 (266)
T d1p9ag_         192 FGSHLLPFAFLHGNPWLCNCEIL  214 (266)
T ss_dssp             TTTCCCSEEECCSCCBCCSGGGH
T ss_pred             CCCCCCCEEEecCCCCCCCcchH
Confidence            89999999999999999988643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-21  Score=203.89  Aligned_cols=199  Identities=23%  Similarity=0.194  Sum_probs=159.2

Q ss_pred             CCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCC
Q 047797          536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRK  615 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  615 (927)
                      .+.+.+.++++++.+|+.+.  +++++|+|++|++++..+..|.++++|++|+|++|+|+.. | .+..+++|++|++++
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSH   86 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCS
T ss_pred             CCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccccc
Confidence            34556777777777776553  4678888888888776667788888888888888888743 2 356788888888888


Q ss_pred             CcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccc
Q 047797          616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLAN  695 (927)
Q Consensus       616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~  695 (927)
                      |++.+ .+..+. .+++|++|++++|.+.+..+..+..+.++++|++++|.+++..+..+..++.               
T Consensus        87 N~l~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~---------------  149 (266)
T d1p9ag_          87 NQLQS-LPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK---------------  149 (266)
T ss_dssp             SCCSS-CCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---------------
T ss_pred             ccccc-cccccc-cccccccccccccccceeeccccccccccccccccccccceecccccccccc---------------
Confidence            88854 444444 6888899999988888777788888999999999999998666655555443               


Q ss_pred             ccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccC
Q 047797          696 EILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQ  775 (927)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  775 (927)
                                                         ++.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..
T Consensus       150 -----------------------------------l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~  193 (266)
T d1p9ag_         150 -----------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (266)
T ss_dssp             -----------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             -----------------------------------chhcccccccccccCccccccccccceeecccCCCc-ccChhHCC
Confidence                                               489999999999988889999999999999999999 67888889


Q ss_pred             CCCCCeEeCCCCcCcc
Q 047797          776 LKSLDFLDLSRNHFSG  791 (927)
Q Consensus       776 l~~L~~L~Ls~N~l~~  791 (927)
                      +++|+.|+|++|.+..
T Consensus       194 ~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         194 SHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TCCCSEEECCSCCBCC
T ss_pred             CCCCCEEEecCCCCCC
Confidence            9999999999999864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.1e-20  Score=209.79  Aligned_cols=64  Identities=23%  Similarity=0.266  Sum_probs=31.6

Q ss_pred             ccCCCCCEEEccCcccccc-----CCCcccccCcccEEEccccccccc----CCccccCCCCCCEEecCCCcC
Q 047797          555 LNFNSLSILNLANNRFSGK-----IPDSMGFLHNIQTLSLRNNRLNGE----LPSSLKNCSKLRVLDLRKNAL  618 (927)
Q Consensus       555 ~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l  618 (927)
                      ...+.++.+++++|.+...     .+........++.+++++|.+...    ....+...+.++.+++++|.+
T Consensus       223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i  295 (460)
T d1z7xw1         223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  295 (460)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3455666666666654321     112223344566666666655422    112233455566666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=5.3e-16  Score=167.92  Aligned_cols=54  Identities=26%  Similarity=0.430  Sum_probs=36.0

Q ss_pred             CCCCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCcc
Q 047797          114 RGLRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLF  176 (927)
Q Consensus       114 ~~L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~  176 (927)
                      .++++|||+++.++.  +|+.   .++|++|++++|+++ .+|..+   .+|+.|++++|.+.
T Consensus        38 ~~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~   91 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK   91 (353)
T ss_dssp             HTCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS
T ss_pred             cCCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc
Confidence            367788888888775  6653   467888888888776 556543   35666666655543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.6e-18  Score=173.71  Aligned_cols=102  Identities=18%  Similarity=0.250  Sum_probs=59.6

Q ss_pred             EEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCc-ccccCCCCCEEEccCccccccC-CCcccccCcccEEEccc-ccc
Q 047797          518 VIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPD-CWLNFNSLSILNLANNRFSGKI-PDSMGFLHNIQTLSLRN-NRL  594 (927)
Q Consensus       518 ~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~-N~l  594 (927)
                      .++.++..++...+..+.++++|++++|+|+.+|. .|.++++|++|++++|.+...+ +.+|.+++.++++.+.. |++
T Consensus        12 ~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l   91 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   91 (242)
T ss_dssp             EEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC
T ss_pred             EEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccc
Confidence            44444444443222334566666666666666554 4566666777777666665433 33566666666666543 455


Q ss_pred             cccCCccccCCCCCCEEecCCCcCC
Q 047797          595 NGELPSSLKNCSKLRVLDLRKNALF  619 (927)
Q Consensus       595 ~~~~~~~~~~l~~L~~L~Ls~N~l~  619 (927)
                      ....+..|.++++|+++++++|.+.
T Consensus        92 ~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          92 LYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccchhhhc
Confidence            5556666666666666666666663

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-19  Score=204.15  Aligned_cols=390  Identities=19%  Similarity=0.118  Sum_probs=177.3

Q ss_pred             cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcC----CcchhhhcCCCCCEEEccCCcCCCcC----ccccc
Q 047797          241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQG----SIPEAFQHMVSLRLLSLASNELEGGI----PKFFG  312 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~  312 (927)
                      ++|++||++.|++++..+.+-+..+. +++.|+|++|.++.    .++..+..+++|++|+|++|+++...    ...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~-~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            46777777777776522333333443 77777777777652    23445567777777777777664211    12222


Q ss_pred             -CCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCC------CCCCCCCCEEEccCCcCCCcc-
Q 047797          313 -NMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPD------LGRFLSLKVLKLGENHLNGTI-  384 (927)
Q Consensus       313 -~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~------l~~l~~L~~L~Ls~n~l~~~~-  384 (927)
                       ..++|++|++++|+++......+...-  ...++|++|++++|.+......      ................+.... 
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l--~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTL--RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHT--TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             cCCCCCCEEECCCCCccccccccccchh--hccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence             224577777777776644322222110  0111555555555544321100      011112223333332222110 


Q ss_pred             ---hhhhhccCCCCEEecCCccccccc----ChhhhhcCCCCCEEEccCCcceecccCCcccccccceeecccccCCCCC
Q 047797          385 ---NKSLSHLFKLETLSLDGNSFTGVI----SETFFSNMSNLQMLFLADNSLTLKLSHDWVPAFQLKWLSLASCKMGPHF  457 (927)
Q Consensus       385 ---~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~  457 (927)
                         ...+.....++.++++++......    .............+++.++.+......                    ..
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~--------------------~~  218 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--------------------DL  218 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH--------------------HH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh--------------------cc
Confidence               111233444555555544432110    000001112233333333322211000                    01


Q ss_pred             ChhhhcCccccEEEccCCccCCCcc----chHHhhccccceeecccccccCCCC----CccccCCCCcEEeccCCccCCC
Q 047797          458 PNWLQTQNQLISLDISNIGISDTIP----DWFWDLSIELFFLNLSNNHISGKLP----DLSVLKSDDIVIDISSNNFDGP  529 (927)
Q Consensus       458 ~~~l~~~~~L~~L~Ls~n~l~~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~~~~l~~l~l~~n~~~~~  529 (927)
                      ...+...+.++.+++++|.+.....    .........++.+++++|.+.....    .....                 
T Consensus       219 ~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~-----------------  281 (460)
T d1z7xw1         219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA-----------------  281 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-----------------
T ss_pred             cccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccc-----------------
Confidence            1123344555666666555432111    1111112345555555544432110    11111                 


Q ss_pred             CCCCCCCCceEeCcCCCCCC-----CCccc-ccCCCCCEEEccCccccccCCC----cccccCcccEEEccccccccc--
Q 047797          530 IPPLPSNSTFLNLSKNKFSG-----LPDCW-LNFNSLSILNLANNRFSGKIPD----SMGFLHNIQTLSLRNNRLNGE--  597 (927)
Q Consensus       530 ~~~~~~~L~~L~L~~n~l~~-----lp~~~-~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~--  597 (927)
                          ...++.+++++|.++.     +...+ .....|+.+++++|.++.....    .+...++|++|+|++|++++.  
T Consensus       282 ----~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~  357 (460)
T d1z7xw1         282 ----KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  357 (460)
T ss_dssp             ----CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             ----cccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCccc
Confidence                2334455555555432     11111 1234567777777766543222    223345677777777776542  


Q ss_pred             --CCcccc-CCCCCCEEecCCCcCCCC----CChhhhhcCccCcEEEccCcccceecCc----ccc-CCCCCCEEEcccc
Q 047797          598 --LPSSLK-NCSKLRVLDLRKNALFGE----VPTCVGGSLQNLIILRLKSNNFHGNIPF----QLC-HLAFIQVLDLSLN  665 (927)
Q Consensus       598 --~~~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~----~l~-~l~~L~~L~Ls~N  665 (927)
                        ++..+. ..+.|++|+|++|.+++.    ++..+. .+++|++|++++|+++.....    .+. +...|+.|++++|
T Consensus       358 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             chhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHh-cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCC
Confidence              222232 355677777777777432    222333 467777777777777643222    222 3346888888888


Q ss_pred             ccccccchhh
Q 047797          666 NISGKIPKCF  675 (927)
Q Consensus       666 ~l~~~~p~~~  675 (927)
                      .+.......+
T Consensus       437 ~~~~~~~~~l  446 (460)
T d1z7xw1         437 YWSEEMEDRL  446 (460)
T ss_dssp             CCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            8775544443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=4.6e-16  Score=168.42  Aligned_cols=305  Identities=24%  Similarity=0.287  Sum_probs=158.7

Q ss_pred             CccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEEeCCCCCCCCchhHHHhhccCCCcCCCc
Q 047797          268 NILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQLYLPRNKLSGQLSELIQNLSSGCTVNSL  347 (927)
Q Consensus       268 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L  347 (927)
                      ++++|||+++.++ .+|+.   .++|++|++++|+++ .+|..   ..+|+.|++++|+++...     .++     +.|
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~-----~lp-----~~L  100 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALS-----DLP-----PLL  100 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC-----SCC-----TTC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhh-----hhc-----ccc
Confidence            6788888888887 45643   467888888888887 44544   346777777777765321     121     146


Q ss_pred             cEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecCCcccccccChhhhhcCCCCCEEEccCC
Q 047797          348 EGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLFLADN  427 (927)
Q Consensus       348 ~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  427 (927)
                      ++|++++|.+.. +|.++.+++|++|++++|.+.....    ....+..+.+.++..... .  .+..++.++.+++++|
T Consensus       101 ~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~-~--~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         101 EYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEEL-P--ELQNLPFLTAIYADNN  172 (353)
T ss_dssp             CEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC-C--CCTTCTTCCEEECCSS
T ss_pred             cccccccccccc-ccchhhhccceeecccccccccccc----ccccccchhhcccccccc-c--cccccccceecccccc
Confidence            666666665553 3344555566666666555543221    123444555544433211 1  1334444444444444


Q ss_pred             cceecccCCcccccccceeecccccCCCCCChhhhcCccccEEEccCCccCCCccchHHhhccccceeecccccccCCCC
Q 047797          428 SLTLKLSHDWVPAFQLKWLSLASCKMGPHFPNWLQTQNQLISLDISNIGISDTIPDWFWDLSIELFFLNLSNNHISGKLP  507 (927)
Q Consensus       428 ~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  507 (927)
                      ......                         .   .....+.+...++.+.                          .++
T Consensus       173 ~~~~~~-------------------------~---~~~~~~~l~~~~~~~~--------------------------~~~  198 (353)
T d1jl5a_         173 SLKKLP-------------------------D---LPLSLESIVAGNNILE--------------------------ELP  198 (353)
T ss_dssp             CCSSCC-------------------------C---CCTTCCEEECCSSCCS--------------------------SCC
T ss_pred             cccccc-------------------------c---cccccccccccccccc--------------------------ccc
Confidence            332110                         0   0011122222222221                          111


Q ss_pred             CccccCCCCcEEeccCCccCCCCCCCCCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEE
Q 047797          508 DLSVLKSDDIVIDISSNNFDGPIPPLPSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTL  587 (927)
Q Consensus       508 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  587 (927)
                      . ...++.++.+++++|.... ++....++..+.+.++.+...+..   ...+...++..+.+.+...    -.......
T Consensus       199 ~-~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~l~~----l~~~~~~~  269 (353)
T d1jl5a_         199 E-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYL  269 (353)
T ss_dssp             C-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESC----CCTTCCEE
T ss_pred             c-ccccccccccccccccccc-cccccccccccccccccccccccc---ccccccccccccccccccc----ccchhccc
Confidence            1 1234445555555554432 344455666666666666654432   2345556665555443211    01234455


Q ss_pred             EcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEcccccc
Q 047797          588 SLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNI  667 (927)
Q Consensus       588 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l  667 (927)
                      ++..+.+.+.    ...+++|++|++++|++. .+|.    .+++|+.|++++|+++ .+|..   +++|++|++++|++
T Consensus       270 ~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         270 NASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPL  336 (353)
T ss_dssp             ECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC
T ss_pred             ccccCccccc----cccCCCCCEEECCCCccC-cccc----ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcC
Confidence            5666655532    223567777777777773 5553    3567777777777776 34432   45677777777777


Q ss_pred             ccccchhh
Q 047797          668 SGKIPKCF  675 (927)
Q Consensus       668 ~~~~p~~~  675 (927)
                      + .+|...
T Consensus       337 ~-~lp~~~  343 (353)
T d1jl5a_         337 R-EFPDIP  343 (353)
T ss_dssp             S-SCCCCC
T ss_pred             C-CCCccc
Confidence            6 445433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.8e-17  Score=167.09  Aligned_cols=203  Identities=24%  Similarity=0.376  Sum_probs=136.9

Q ss_pred             EeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCC
Q 047797          540 LNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALF  619 (927)
Q Consensus       540 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  619 (927)
                      ++++.++++++ ..+..+.+|+.|++.+|.++..  +.+..+++|++|++++|++++..|  +..+++|+++++++|.++
T Consensus        24 ~~l~~~~~~d~-~~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          24 IAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HHTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HHhCCCCcCCc-CCHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence            34555555552 1334556677777777777643  346677777777777777765433  677777777777777763


Q ss_pred             CCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccccccccc
Q 047797          620 GEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILV  699 (927)
Q Consensus       620 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  699 (927)
                       .++ .+. .+++|+.+++++|...+.  ..+...+.++.+.++++.+....+  +.                       
T Consensus        99 -~i~-~l~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~-----------------------  148 (227)
T d1h6ua2          99 -NVS-AIA-GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LA-----------------------  148 (227)
T ss_dssp             -CCG-GGT-TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GG-----------------------
T ss_pred             -ccc-ccc-cccccccccccccccccc--chhccccchhhhhchhhhhchhhh--hc-----------------------
Confidence             344 233 577777777777766543  235566777777777776653221  22                       


Q ss_pred             ccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCC
Q 047797          700 VPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSL  779 (927)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  779 (927)
                                                 ..+.|+.|++++|.+++..  .++++++|++|+|++|++++.  +.++++++|
T Consensus       149 ---------------------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L  197 (227)
T d1h6ua2         149 ---------------------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI--SPLASLPNL  197 (227)
T ss_dssp             ---------------------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             ---------------------------cccccccccccccccccch--hhcccccceecccCCCccCCC--hhhcCCCCC
Confidence                                       2334588888888886543  378888899999999988864  348888899


Q ss_pred             CeEeCCCCcCcccCCccccCCCCCCeEeCcC
Q 047797          780 DFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY  810 (927)
Q Consensus       780 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  810 (927)
                      ++|+|++|++++..  .++++++|++|++++
T Consensus       198 ~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         198 IEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             CEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            99999999988643  378888999998863

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-17  Score=171.03  Aligned_cols=220  Identities=16%  Similarity=0.088  Sum_probs=146.7

Q ss_pred             ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEccccccccc-CCccccCCCCCCEEecCC-
Q 047797          538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGE-LPSSLKNCSKLRVLDLRK-  615 (927)
Q Consensus       538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~-  615 (927)
                      +.++.++.+++.+|+.+.  +++++|++++|+++...+.+|.++++|++|++++|.+... .+..|.+++.++++++.. 
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            567777777888876553  4678888888888766566777788888888888877653 345677777777777654 


Q ss_pred             CcCCCCCChhhhhcCccCcEEEccCcccceecC-ccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccc
Q 047797          616 NALFGEVPTCVGGSLQNLIILRLKSNNFHGNIP-FQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLA  694 (927)
Q Consensus       616 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~  694 (927)
                      |.+....+..+. .+++|+++++++|.+....+ ..+..++.+..+..+++.+....+..|.+++               
T Consensus        89 n~l~~~~~~~~~-~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~---------------  152 (242)
T d1xwdc1          89 NNLLYINPEAFQ-NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS---------------  152 (242)
T ss_dssp             TTCCEECTTSEE-CCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred             cccccccccccc-ccccccccccchhhhccccccccccccccccccccccccccccccccccccc---------------
Confidence            455443444343 57777777777777754322 2233445555555555555543333333221               


Q ss_pred             cccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCE-EecccccccccCCccc
Q 047797          695 NEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTA-LNLSRNNLTGLIPPKI  773 (927)
Q Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~~~~p~~l  773 (927)
                                                        ..++.|++++|+++...+..+. ..++++ +++++|+++.+.+..|
T Consensus       153 ----------------------------------~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f  197 (242)
T d1xwdc1         153 ----------------------------------FESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVF  197 (242)
T ss_dssp             ----------------------------------SSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTT
T ss_pred             ----------------------------------ccceeeeccccccccccccccc-chhhhccccccccccccccHHHh
Confidence                                              2347899999999876665554 444444 4678888887666678


Q ss_pred             cCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcC
Q 047797          774 GQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY  810 (927)
Q Consensus       774 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  810 (927)
                      .++++|++|||++|+++...+..|.++++|+++++.+
T Consensus       198 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            9999999999999999866566687777777766644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.6e-17  Score=167.50  Aligned_cols=187  Identities=22%  Similarity=0.314  Sum_probs=152.0

Q ss_pred             CCCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEec
Q 047797          534 PSNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDL  613 (927)
Q Consensus       534 ~~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  613 (927)
                      +.+|+.|++.+|+++.++ ++.++++|++|++++|.+++..|  +..+++|+++++++|.++..  ..+.++++|+.+++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred             cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--cccccccccccccc
Confidence            346888889999988884 68899999999999999986543  88899999999999998743  35889999999999


Q ss_pred             CCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCcccc
Q 047797          614 RKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGL  693 (927)
Q Consensus       614 s~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~  693 (927)
                      ++|...+..+  +. ..+.++.+.++++.+....  .+...++|++|++++|.+++..+  +++                
T Consensus       115 ~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--l~~----------------  171 (227)
T d1h6ua2         115 TSTQITDVTP--LA-GLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LAN----------------  171 (227)
T ss_dssp             TTSCCCCCGG--GT-TCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTT----------------
T ss_pred             ccccccccch--hc-cccchhhhhchhhhhchhh--hhccccccccccccccccccchh--hcc----------------
Confidence            9998854332  33 5789999999999887543  46788999999999998874322  333                


Q ss_pred             ccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccc
Q 047797          694 ANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKI  773 (927)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  773 (927)
                                                        +++|+.|||++|++++..  .++++++|++|+|++|++++..  .+
T Consensus       172 ----------------------------------l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l  213 (227)
T d1h6ua2         172 ----------------------------------LSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS--PL  213 (227)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG--GG
T ss_pred             ----------------------------------cccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCc--cc
Confidence                                              345599999999998743  3899999999999999999763  48


Q ss_pred             cCCCCCCeEeCCC
Q 047797          774 GQLKSLDFLDLSR  786 (927)
Q Consensus       774 ~~l~~L~~L~Ls~  786 (927)
                      +++++|++|++++
T Consensus       214 ~~l~~L~~L~lsn  226 (227)
T d1h6ua2         214 ANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCTTCCEEEEEE
T ss_pred             ccCCCCCEEEeeC
Confidence            9999999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=9.3e-18  Score=164.16  Aligned_cols=86  Identities=27%  Similarity=0.305  Sum_probs=41.7

Q ss_pred             eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN  811 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  811 (927)
                      +.|+|++|+|+++.|..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|.+....+... -...++.+.+..|
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~  159 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGG  159 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGG
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCC
Confidence            455555555555555555555555555555555555555555555555555555555543221110 0112334444555


Q ss_pred             cCcccCC
Q 047797          812 SLSGKIP  818 (927)
Q Consensus       812 ~l~~~~p  818 (927)
                      .+.|..|
T Consensus       160 ~~~c~~p  166 (192)
T d1w8aa_         160 AARCGAP  166 (192)
T ss_dssp             GCBBCSS
T ss_pred             CeEeCCC
Confidence            5555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=3.1e-17  Score=160.33  Aligned_cols=88  Identities=25%  Similarity=0.338  Sum_probs=56.7

Q ss_pred             eEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcCC
Q 047797          732 KYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSYN  811 (927)
Q Consensus       732 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  811 (927)
                      +.|+|++|++.+.++..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|++++|
T Consensus        57 ~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             eeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCcccCCC
Q 047797          812 SLSGKIPL  819 (927)
Q Consensus       812 ~l~~~~p~  819 (927)
                      ++.|.++.
T Consensus       137 ~~~~~~~~  144 (192)
T d1w8aa_         137 PFNCNCHL  144 (192)
T ss_dssp             CBCCSGGG
T ss_pred             ccccccch
Confidence            66665554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.4e-16  Score=156.26  Aligned_cols=165  Identities=27%  Similarity=0.352  Sum_probs=105.6

Q ss_pred             cCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEE
Q 047797          581 LHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVL  660 (927)
Q Consensus       581 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  660 (927)
                      +.+|+.|++++|.++...  .+..+++|++|++++|++++ ++. +. .+++|++|++++|++++ +| .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~~-~~-~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-ccc-cc-cCccccccccccccccc-cc-ccccccccccc
Confidence            455666666666665322  25566666666666666643 332 22 46667777777776663 33 46667777777


Q ss_pred             EccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCc
Q 047797          661 DLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNK  740 (927)
Q Consensus       661 ~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  740 (927)
                      ++++|.+... + .+.+                                                  ++.++.+++++|.
T Consensus       118 ~l~~~~~~~~-~-~l~~--------------------------------------------------l~~l~~l~~~~n~  145 (210)
T d1h6ta2         118 SLEHNGISDI-N-GLVH--------------------------------------------------LPQLESLYLGNNK  145 (210)
T ss_dssp             ECTTSCCCCC-G-GGGG--------------------------------------------------CTTCCEEECCSSC
T ss_pred             cccccccccc-c-cccc--------------------------------------------------ccccccccccccc
Confidence            7777766421 1 1222                                                  2344777777777


Q ss_pred             ccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEeCcC
Q 047797          741 LCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLDLSY  810 (927)
Q Consensus       741 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  810 (927)
                      +++.  ..+.++++|+.+++++|++++.  ..+.++++|++|+|++|+++. +| .+.++++|++|+|++
T Consensus       146 l~~~--~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         146 ITDI--TVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCC--GGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccc--cccccccccccccccccccccc--ccccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            7653  3466778888888888888764  237788888888888888874 44 578888888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4e-16  Score=154.66  Aligned_cols=166  Identities=28%  Similarity=0.400  Sum_probs=113.5

Q ss_pred             cCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcE
Q 047797          556 NFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLII  635 (927)
Q Consensus       556 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~  635 (927)
                      .+.+|++|++++|.++..  ..+..+++|++|++++|++++..  .+..+++|++|++++|+++ .+|. +. .+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLSS-LK-DLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGGG-GT-TCTTCCE
T ss_pred             HhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-cccc-cc-ccccccc
Confidence            345677777777776643  23666777777777777776533  2566777777777777774 3442 33 5777777


Q ss_pred             EEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEE
Q 047797          636 LRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLL  715 (927)
Q Consensus       636 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (927)
                      |++++|.+..  ...+.+++.++.+++++|.+++..  .+..                                      
T Consensus       117 L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~--~~~~--------------------------------------  154 (210)
T d1h6ta2         117 LSLEHNGISD--INGLVHLPQLESLYLGNNKITDIT--VLSR--------------------------------------  154 (210)
T ss_dssp             EECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG--GGGG--------------------------------------
T ss_pred             cccccccccc--cccccccccccccccccccccccc--cccc--------------------------------------
Confidence            7777777653  235677778888888888776321  2222                                      


Q ss_pred             eeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCC
Q 047797          716 TWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSR  786 (927)
Q Consensus       716 ~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  786 (927)
                                  +++|+.+++++|++++..+  +.++++|++|+|++|++++. | .+.++++|++|+|++
T Consensus       155 ------------l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         155 ------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             ------------ccccccccccccccccccc--ccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence                        3445888888888876433  78888999999999988854 3 588889999998863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=8.3e-16  Score=150.97  Aligned_cols=71  Identities=35%  Similarity=0.521  Sum_probs=44.3

Q ss_pred             ceeEEEccCCcccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeE
Q 047797          730 FVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVL  806 (927)
Q Consensus       730 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  806 (927)
                      +|+.|++++|++... + .+..+++|++|++++|++++.  +.++++++|++|++++|+++. +| .++.+++|++|
T Consensus       129 ~L~~L~l~~n~l~~~-~-~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         129 NLNRLELSSNTISDI-S-ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhHHhhhhhhhhccc-c-cccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            346666666666432 2 356667777777777777654  236677777777777777764 32 46666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=6.7e-15  Score=144.38  Aligned_cols=160  Identities=24%  Similarity=0.373  Sum_probs=76.0

Q ss_pred             cCccEEEcCCCCCCCCCcchhHhhcccCccEEEccCCcCcCCcchhhhcCCCCCEEEccCCcCCCcCcccccCCCCCcEE
Q 047797          241 TSIETLDLSDNHLPSSSVYPWLFNLSRNILHLDLGFNHLQGSIPEAFQHMVSLRLLSLASNELEGGIPKFFGNMCSLNQL  320 (927)
Q Consensus       241 ~~L~~L~Ls~n~l~~~~~~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  320 (927)
                      +++++|++++|.++.  + +.+..+. +|++|++++|++++..|  ++++++|++|++++|.+... + .+.++++|+.|
T Consensus        40 ~~l~~L~l~~~~i~~--l-~~l~~l~-nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          40 DQVTTLQADRLGIKS--I-DGVEYLN-NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             TTCCEEECTTSCCCC--C-TTGGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             cCCCEEECCCCCCCC--c-cccccCC-CcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccc
Confidence            445555555554432  1 2233333 55555555555543322  55555555555555554432 1 24555555555


Q ss_pred             eCCCCCCCCchhHHHhhccCCCcCCCccEEEccCCCCcccCCCCCCCCCCCEEEccCCcCCCcchhhhhccCCCCEEecC
Q 047797          321 YLPRNKLSGQLSELIQNLSSGCTVNSLEGLCLYANDITGPIPDLGRFLSLKVLKLGENHLNGTINKSLSHLFKLETLSLD  400 (927)
Q Consensus       321 ~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~  400 (927)
                      ++++|.+....+  +..++      +|+.|++++|.+.. ++.+..+++|++|++++|++++..  .++++++|++|+++
T Consensus       112 ~l~~~~~~~~~~--~~~l~------~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls  180 (199)
T d2omxa2         112 TLFNNQITDIDP--LKNLT------NLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDIS  180 (199)
T ss_dssp             ECCSSCCCCCGG--GTTCT------TCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECC
T ss_pred             cccccccccccc--cchhh------hhHHhhhhhhhhcc-cccccccccccccccccccccCCc--cccCCCCCCEEECC
Confidence            555555443221  33333      55555555554432 223445555555555555555432  25555555555555


Q ss_pred             CcccccccChhhhhcCCCCCEE
Q 047797          401 GNSFTGVISETFFSNMSNLQML  422 (927)
Q Consensus       401 ~n~l~~~~~~~~~~~l~~L~~L  422 (927)
                      +|++++ ++  .++.+++|++|
T Consensus       181 ~N~i~~-i~--~l~~L~~L~~L  199 (199)
T d2omxa2         181 SNKVSD-IS--VLAKLTNLESL  199 (199)
T ss_dssp             SSCCCC-CG--GGGGCTTCSEE
T ss_pred             CCCCCC-Cc--cccCCCCCCcC
Confidence            555542 32  24455555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.3e-16  Score=159.70  Aligned_cols=205  Identities=20%  Similarity=0.182  Sum_probs=101.0

Q ss_pred             CCeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCC-CCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEE
Q 047797          116 LRHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSK-IPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLD  194 (927)
Q Consensus       116 L~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~  194 (927)
                      +..+.++...+... . .......+|++||+++|.+.+. ++..+.++++|++|+++++.+ ....+..++++++|++|+
T Consensus        25 ~~~lrl~~~~~~~~-~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l-~~~~~~~l~~~~~L~~L~  101 (284)
T d2astb2          25 VIAFRCPRSFMDQP-L-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL-SDPIVNTLAKNSNLVRLN  101 (284)
T ss_dssp             CSEEECTTCEECSC-C-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC-CHHHHHHHTTCTTCSEEE
T ss_pred             ceEeeccccccccc-h-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCC-CcHHHHHHhcCCCCcCcc
Confidence            44555554443321 1 1223345666777766655433 233345566666666665542 222334455566666666


Q ss_pred             CCCccCCCCCchHHhhcCCCCCCEEEcCCCC-CCCCCCchhhccccccCccEEEcCCC--CCCCCCcchhHhhcccCccE
Q 047797          195 LSCINLTKSSDWFQVVSQLHSLKTLVLRSCY-LPPINPSFIWLFNLSTSIETLDLSDN--HLPSSSVYPWLFNLSRNILH  271 (927)
Q Consensus       195 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~~~~~L~~L~Ls~n--~l~~~~~~~~l~~~~~~L~~  271 (927)
                      ++++.-.....+......+++|++|++++|. +++.... ..+...+++|+.|+++++  .+++ .....+....++|++
T Consensus       102 Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~i~~-~~l~~l~~~~~~L~~  179 (284)
T d2astb2         102 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ-VAVAHVSETITQLNLSGYRKNLQK-SDLSTLVRRCPNLVH  179 (284)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH-HHHHHSCTTCCEEECCSCGGGSCH-HHHHHHHHHCTTCSE
T ss_pred             ccccccccccccchhhHHHHhccccccccccccccccch-hhhcccccccchhhhccccccccc-ccccccccccccccc
Confidence            6664322211222334456666666666652 2221100 112233356666666654  2322 112223232336666


Q ss_pred             EEccCC-cCcCCcchhhhcCCCCCEEEccCC-cCCCcCcccccCCCCCcEEeCCCC
Q 047797          272 LDLGFN-HLQGSIPEAFQHMVSLRLLSLASN-ELEGGIPKFFGNMCSLNQLYLPRN  325 (927)
Q Consensus       272 L~Ls~n-~i~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n  325 (927)
                      |++++| .+++.....+.++++|++|++++| .++......++++++|++|+++++
T Consensus       180 L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666664 345455555666666666666664 444444445556666666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.5e-15  Score=158.03  Aligned_cols=204  Identities=19%  Similarity=0.194  Sum_probs=119.4

Q ss_pred             CeeeCCCCCCCCCCCCccccCC--CCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEE
Q 047797          117 RHLDLSKNDFGGSPVPEFIGSL--SKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLD  194 (927)
Q Consensus       117 ~~L~Ls~n~~~~~~lp~~l~~l--~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~  194 (927)
                      ++|||+++.+..    +.++.+  .....+.++......... ......+|++||++++.+........+.++++|++|+
T Consensus         3 ~~lDLs~~~l~~----~~l~~l~~~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           3 QTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             SEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             CEEECCCCCCCc----hHHHHHHhccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence            467888777643    222211  245667776655443332 2345568999999877653322223467888888888


Q ss_pred             CCCccCCCCCchHHhhcCCCCCCEEEcCCC-CCCCCCCchhhccccccCccEEEcCCC-CCCCCCcchhHhhcccCccEE
Q 047797          195 LSCINLTKSSDWFQVVSQLHSLKTLVLRSC-YLPPINPSFIWLFNLSTSIETLDLSDN-HLPSSSVYPWLFNLSRNILHL  272 (927)
Q Consensus       195 Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~~l~~~~~~L~~L  272 (927)
                      ++++.+++  ..+..++.+++|++|++++| .+++..-  ..+...+++|++|+++++ .+++..+...+....++|+.|
T Consensus        78 L~~~~l~~--~~~~~l~~~~~L~~L~Ls~c~~itd~~l--~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L  153 (284)
T d2astb2          78 LEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFAL--QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  153 (284)
T ss_dssp             CTTCBCCH--HHHHHHTTCTTCSEEECTTCBSCCHHHH--HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             ccccCCCc--HHHHHHhcCCCCcCcccccccccccccc--chhhHHHHhccccccccccccccccchhhhcccccccchh
Confidence            88887765  45667778888888888886 3443211  223333377888888775 343212223344444577777


Q ss_pred             EccCCc--CcCC-cchhhhcCCCCCEEEccCC-cCCCcCcccccCCCCCcEEeCCCC-CCCC
Q 047797          273 DLGFNH--LQGS-IPEAFQHMVSLRLLSLASN-ELEGGIPKFFGNMCSLNQLYLPRN-KLSG  329 (927)
Q Consensus       273 ~Ls~n~--i~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n-~l~~  329 (927)
                      +++++.  ++.. +...+.++++|++|++++| .+++.....+..+++|++|++++| .+++
T Consensus       154 ~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             hhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh
Confidence            777652  3221 2223455677777777765 355455556666666677766664 3443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=9.3e-15  Score=157.19  Aligned_cols=236  Identities=17%  Similarity=0.143  Sum_probs=137.0

Q ss_pred             CCceEeCcCCCCCC-----CCcccccCCCCCEEEccCcccccc----------CCCcccccCcccEEEccccccccc---
Q 047797          536 NSTFLNLSKNKFSG-----LPDCWLNFNSLSILNLANNRFSGK----------IPDSMGFLHNIQTLSLRNNRLNGE---  597 (927)
Q Consensus       536 ~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L~~N~l~~~---  597 (927)
                      .+++|+|++|.+..     +...+...++|+.++++++.....          +...+..+++|+.|++++|.++..   
T Consensus        32 ~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  111 (344)
T d2ca6a1          32 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE  111 (344)
T ss_dssp             CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred             CCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccccc
Confidence            34445555554432     222344556666666665543211          112234456677777777766543   


Q ss_pred             -CCccccCCCCCCEEecCCCcCCCCCChhh------------hhcCccCcEEEccCccccee----cCccccCCCCCCEE
Q 047797          598 -LPSSLKNCSKLRVLDLRKNALFGEVPTCV------------GGSLQNLIILRLKSNNFHGN----IPFQLCHLAFIQVL  660 (927)
Q Consensus       598 -~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~------------~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L  660 (927)
                       +...+..+++|++|++++|.+.......+            ....+.|+.+.+++|.+...    +...+...+.|+.|
T Consensus       112 ~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L  191 (344)
T d2ca6a1         112 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  191 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             chhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccc
Confidence             22334456777777777776521111011            11355677777777776522    23345566778888


Q ss_pred             EccccccccccchhhccccccccccCCCCccccccccccccccceeeeecceeEEeeecccccccccccceeEEEccCCc
Q 047797          661 DLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVVPGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNK  740 (927)
Q Consensus       661 ~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~  740 (927)
                      ++++|.++......+  +                                           .......++|+.|+|++|.
T Consensus       192 ~L~~n~i~~~g~~~~--l-------------------------------------------~~~l~~~~~L~~L~Ls~N~  226 (344)
T d2ca6a1         192 KMVQNGIRPEGIEHL--L-------------------------------------------LEGLAYCQELKVLDLQDNT  226 (344)
T ss_dssp             ECCSSCCCHHHHHHH--H-------------------------------------------HTTGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccccc--h-------------------------------------------hhhhcchhhhccccccccc
Confidence            888877653110000  0                                           0112234566889999998


Q ss_pred             cccc----CccccccccCCCEEecccccccccCCccc----c--CCCCCCeEeCCCCcCcccC----Ccccc-CCCCCCe
Q 047797          741 LCEA----IPEEITDLVGLTALNLSRNNLTGLIPPKI----G--QLKSLDFLDLSRNHFSGNI----PSSLS-LLSGLSV  805 (927)
Q Consensus       741 l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~--~l~~L~~L~Ls~N~l~~~~----p~~l~-~l~~L~~  805 (927)
                      ++..    +...+..+++|++|+|++|.|++.....+    .  ..+.|++||+++|+|+...    ...+. +.++|++
T Consensus       227 i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~  306 (344)
T d2ca6a1         227 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  306 (344)
T ss_dssp             CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCE
Confidence            8643    44556788899999999998876422222    2  2367999999999987532    23332 5678999


Q ss_pred             EeCcCCcCccc
Q 047797          806 LDLSYNSLSGK  816 (927)
Q Consensus       806 L~ls~N~l~~~  816 (927)
                      |++++|.+...
T Consensus       307 L~l~~N~~~~~  317 (344)
T d2ca6a1         307 LELNGNRFSEE  317 (344)
T ss_dssp             EECTTSBSCTT
T ss_pred             EECCCCcCCCc
Confidence            99999998643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.4e-13  Score=127.47  Aligned_cols=63  Identities=19%  Similarity=0.178  Sum_probs=30.4

Q ss_pred             ccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccc
Q 047797          602 LKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNIS  668 (927)
Q Consensus       602 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~  668 (927)
                      |.++.++++|+|++|+| ..+|..+. .+++|+.|++++|+++..  +.+..+++|++|++++|+++
T Consensus        14 ~~n~~~lr~L~L~~n~I-~~i~~~~~-~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~   76 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKI-PVIENLGA-TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC   76 (162)
T ss_dssp             EECTTSCEEEECTTSCC-CSCCCGGG-GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC
T ss_pred             ccCcCcCcEEECCCCCC-CccCcccc-ccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc
Confidence            34445555555555555 23333222 345555555555555422  12444555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.5e-13  Score=127.38  Aligned_cols=124  Identities=20%  Similarity=0.270  Sum_probs=95.2

Q ss_pred             CCCceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797          535 SNSTFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR  614 (927)
Q Consensus       535 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  614 (927)
                      ..+++|++++|+|+.+|..+..+++|+.|++++|.++..  +.|..+++|++|++++|+++...+..+..+++|++|+++
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            467888888888888877677788899999999988854  357888889999999999887666667788889999999


Q ss_pred             CCcCCCCCCh--hhhhcCccCcEEEccCcccceec---CccccCCCCCCEEEc
Q 047797          615 KNALFGEVPT--CVGGSLQNLIILRLKSNNFHGNI---PFQLCHLAFIQVLDL  662 (927)
Q Consensus       615 ~N~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L  662 (927)
                      +|++. .++.  .+. .+++|++|++++|+++...   +..+..+++|++||-
T Consensus        96 ~N~i~-~~~~l~~l~-~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          96 NNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             SCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccc-ccccccccc-cccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            99884 3432  333 6888888888888886432   124677888888763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=6.9e-13  Score=117.97  Aligned_cols=102  Identities=24%  Similarity=0.270  Sum_probs=56.0

Q ss_pred             CeeeCCCCCCCCCCCCccccCCCCCCEEECCCCCCCCCCCccCCCCCCCcEEecCCCCccCCCCcccccCCCCCcEEECC
Q 047797          117 RHLDLSKNDFGGSPVPEFIGSLSKLRYLNLSCGTPSSKIPHPFRDLSGFEYFNVENSNLFSVGSLERLSHLSSLRHLDLS  196 (927)
Q Consensus       117 ~~L~Ls~n~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~Ls  196 (927)
                      |+|||++|+++.  ++ .++.+++|++|++++|.+. .+|..++.+++|++|++++|.+...   +.+.++++|++|+++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l---~~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV---DGVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc---CccccccccCeEECC
Confidence            566777777764  33 3666777777777777665 4555666666666666666555332   334555555555555


Q ss_pred             CccCCCCCchHHhhcCCCCCCEEEcCCCCC
Q 047797          197 CINLTKSSDWFQVVSQLHSLKTLVLRSCYL  226 (927)
Q Consensus       197 ~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l  226 (927)
                      +|+++..+.+ ..+..+++|++|++++|.+
T Consensus        74 ~N~i~~~~~~-~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          74 NNRLQQSAAI-QPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SSCCCSSSTT-GGGGGCTTCCEEECTTSGG
T ss_pred             CCccCCCCCc-hhhcCCCCCCEEECCCCcC
Confidence            5555543221 2233444444444444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=9.7e-13  Score=117.00  Aligned_cols=102  Identities=23%  Similarity=0.324  Sum_probs=66.5

Q ss_pred             ceEeCcCCCCCCCCcccccCCCCCEEEccCccccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCc
Q 047797          538 TFLNLSKNKFSGLPDCWLNFNSLSILNLANNRFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNA  617 (927)
Q Consensus       538 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  617 (927)
                      +.|++++|+++.++ .+..+++|++|++++|.++ .+|..++.+++|++|++++|++++. | .+..+++|++|++++|+
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            35677777777665 3667777777777777776 4556677777777777777777643 3 46677777777777777


Q ss_pred             CCCCCC-hhhhhcCccCcEEEccCcccc
Q 047797          618 LFGEVP-TCVGGSLQNLIILRLKSNNFH  644 (927)
Q Consensus       618 l~~~~p-~~~~~~l~~L~~L~L~~n~l~  644 (927)
                      +.+... ..+. .+++|++|++++|+++
T Consensus        77 i~~~~~~~~l~-~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLV-SCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGG-GCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhc-CCCCCCEEECCCCcCC
Confidence            743221 2233 5666777777777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=2.8e-13  Score=145.42  Aligned_cols=67  Identities=24%  Similarity=0.240  Sum_probs=31.0

Q ss_pred             CCCCCCCCEEEccCCcCCCcchhh----hhc--cCCCCEEecCCccccccc----ChhhhhcCCCCCEEEccCCcce
Q 047797          364 LGRFLSLKVLKLGENHLNGTINKS----LSH--LFKLETLSLDGNSFTGVI----SETFFSNMSNLQMLFLADNSLT  430 (927)
Q Consensus       364 l~~l~~L~~L~Ls~n~l~~~~~~~----l~~--l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~  430 (927)
                      +..+++|++|++++|.+++.....    +..  .+.|++|++++|++....    ......++++|++|++++|++.
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            334455666666666555332222    221  244666666666554221    1111124455666666655553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.2e-12  Score=117.32  Aligned_cols=90  Identities=22%  Similarity=0.161  Sum_probs=77.1

Q ss_pred             cceeEEEccCC-cccccCccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCccccCCCCCCeEe
Q 047797          729 GFVKYLDLSSN-KLCEAIPEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSSLSLLSGLSVLD  807 (927)
Q Consensus       729 ~~L~~LdLs~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  807 (927)
                      ++++.|++++| .++.+.+..|.++++|+.|+|++|+|+.+.|.+|..+++|++|||++|+|+...+..|..+ +|+.|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccc
Confidence            34588888766 4888778889999999999999999999989999999999999999999996555556554 799999


Q ss_pred             CcCCcCcccCCC
Q 047797          808 LSYNSLSGKIPL  819 (927)
Q Consensus       808 ls~N~l~~~~p~  819 (927)
                      |++|+|.|.|-.
T Consensus       110 L~~Np~~C~C~~  121 (156)
T d2ifga3         110 LSGNPLHCSCAL  121 (156)
T ss_dssp             CCSSCCCCCGGG
T ss_pred             cCCCcccCCchH
Confidence            999999988754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=4.4e-13  Score=130.37  Aligned_cols=131  Identities=25%  Similarity=0.294  Sum_probs=83.6

Q ss_pred             CCChhhhhcCccCcEEEccCcccceecCccccCCCCCCEEEccccccccccchhhccccccccccCCCCccccccccccc
Q 047797          621 EVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLAFIQVLDLSLNNISGKIPKCFSNFSMMIQEKSSNPIIGLANEILVV  700 (927)
Q Consensus       621 ~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  700 (927)
                      .+|..+. .+++|++|+|++|+++. ++ .+..+++|++|++++|.++. +|..+..+                      
T Consensus        39 ~l~~sl~-~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~----------------------   92 (198)
T d1m9la_          39 KMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVA----------------------   92 (198)
T ss_dssp             CCHHHHH-HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHH----------------------
T ss_pred             hhhhHHh-cccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccc----------------------
Confidence            3444454 56677777777777663 32 46667777777777777652 33222221                      


Q ss_pred             cccceeeeecceeEEeeecccccccccccceeEEEccCCcccccCccccccccCCCEEecccccccccCC-ccccCCCCC
Q 047797          701 PGYIYYFRYLDNVLLTWKGSEHEYKSTLGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIP-PKIGQLKSL  779 (927)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L  779 (927)
                                                  +.|+.|++++|+++..  +.+.++++|+.|++++|+++.... ..+..+++|
T Consensus        93 ----------------------------~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L  142 (198)
T d1m9la_          93 ----------------------------DTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL  142 (198)
T ss_dssp             ----------------------------HHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred             ----------------------------cccccccccccccccc--ccccccccccccccccchhccccccccccCCCcc
Confidence                                        2347777888777653  246777888888888888775422 357777888


Q ss_pred             CeEeCCCCcCcccCCcc----------ccCCCCCCeEe
Q 047797          780 DFLDLSRNHFSGNIPSS----------LSLLSGLSVLD  807 (927)
Q Consensus       780 ~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  807 (927)
                      +.|+|++|++....+..          +..+++|+.||
T Consensus       143 ~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            88888888776554432          45677788776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=7.1e-13  Score=128.87  Aligned_cols=87  Identities=23%  Similarity=0.292  Sum_probs=43.2

Q ss_pred             CcccccCcccEEEcccccccccCCccccCCCCCCEEecCCCcCCCCCChhhhhcCccCcEEEccCcccceecCccccCCC
Q 047797          576 DSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLRKNALFGEVPTCVGGSLQNLIILRLKSNNFHGNIPFQLCHLA  655 (927)
Q Consensus       576 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  655 (927)
                      .++..+++|++|+|++|+|+.. + .+..+++|++|++++|++ ..+|.... .+++|++|++++|+++..  ..+..++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~-~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLI-KKIENLDA-VADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEE-CSCSSHHH-HHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hHHhcccccceeECcccCCCCc-c-cccCCccccChhhccccc-cccccccc-cccccccccccccccccc--ccccccc
Confidence            3455566666666666666532 2 355556666666666655 33443322 234455555555555422  1234444


Q ss_pred             CCCEEEccccccc
Q 047797          656 FIQVLDLSLNNIS  668 (927)
Q Consensus       656 ~L~~L~Ls~N~l~  668 (927)
                      +|++|++++|+++
T Consensus       116 ~L~~L~L~~N~i~  128 (198)
T d1m9la_         116 NLRVLYMSNNKIT  128 (198)
T ss_dssp             HSSEEEESEEECC
T ss_pred             cccccccccchhc
Confidence            4444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3e-11  Score=112.08  Aligned_cols=107  Identities=19%  Similarity=0.127  Sum_probs=86.8

Q ss_pred             CCceEeCcCCCCCCCCcccccCCCCCEEEccCc-cccccCCCcccccCcccEEEcccccccccCCccccCCCCCCEEecC
Q 047797          536 NSTFLNLSKNKFSGLPDCWLNFNSLSILNLANN-RFSGKIPDSMGFLHNIQTLSLRNNRLNGELPSSLKNCSKLRVLDLR  614 (927)
Q Consensus       536 ~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  614 (927)
                      ..+.++.+++++..+|..+..+++|++|++++| .++...+.+|.++++|+.|++++|+|+.+.+.+|..+++|++|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            345678888888888888888889999999766 4777767788889999999999999998888889999999999999


Q ss_pred             CCcCCCCCChhhhhcCccCcEEEccCcccc
Q 047797          615 KNALFGEVPTCVGGSLQNLIILRLKSNNFH  644 (927)
Q Consensus       615 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~  644 (927)
                      +|++. .+|...+ ...+|+.|+|++|++.
T Consensus        89 ~N~l~-~l~~~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTT-CSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhh-ccccccccccCCCccc
Confidence            99984 6666655 3457888888888874

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3e-08  Score=92.08  Aligned_cols=80  Identities=25%  Similarity=0.165  Sum_probs=47.3

Q ss_pred             ccceeEEEccCCcccccC--ccccccccCCCEEecccccccccCCccccCCCCCCeEeCCCCcCcccCCcc-------cc
Q 047797          728 LGFVKYLDLSSNKLCEAI--PEEITDLVGLTALNLSRNNLTGLIPPKIGQLKSLDFLDLSRNHFSGNIPSS-------LS  798 (927)
Q Consensus       728 l~~L~~LdLs~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------l~  798 (927)
                      ++.|++|||++|+|+...  +..+..+++|+.|+|++|+|+...+-.+.....|+.|++++|.+.......       +.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            344566666666665532  344566677777777777776543323333456777777777776544322       45


Q ss_pred             CCCCCCeEe
Q 047797          799 LLSGLSVLD  807 (927)
Q Consensus       799 ~l~~L~~L~  807 (927)
                      .+++|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            567777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=9.3e-08  Score=88.66  Aligned_cols=56  Identities=25%  Similarity=0.191  Sum_probs=39.3

Q ss_pred             ccceeEEEccCCcccccCccccccccCCCEEecccccccccCCcc-------ccCCCCCCeEe
Q 047797          728 LGFVKYLDLSSNKLCEAIPEEITDLVGLTALNLSRNNLTGLIPPK-------IGQLKSLDFLD  783 (927)
Q Consensus       728 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-------l~~l~~L~~L~  783 (927)
                      +++|+.|||++|+|+...+-.+.+...|++|++++|.++......       +..+|+|+.||
T Consensus        90 l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          90 APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            344588888888887755544445567888888888887654432       56688888886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.45  E-value=0.00018  Score=66.15  Aligned_cols=38  Identities=11%  Similarity=-0.029  Sum_probs=19.4

Q ss_pred             CCCCCCEEEccCCcCCCc-------chhhhhccCCCCEEecCCcc
Q 047797          366 RFLSLKVLKLGENHLNGT-------INKSLSHLFKLETLSLDGNS  403 (927)
Q Consensus       366 ~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~L~~n~  403 (927)
                      ..++|++|++++|.+...       +...+...++|+.|+++.+.
T Consensus        98 ~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          98 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            344566666666544322       22334445666666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.35  E-value=5.3e-05  Score=69.82  Aligned_cols=41  Identities=7%  Similarity=0.262  Sum_probs=20.4

Q ss_pred             CCCCcEEECCCc-cCCCC--CchHHhhcCCCCCCEEEcCCCCCC
Q 047797          187 LSSLRHLDLSCI-NLTKS--SDWFQVVSQLHSLKTLVLRSCYLP  227 (927)
Q Consensus       187 l~~L~~L~Ls~n-~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~  227 (927)
                      .++|++|+|+++ .++..  ..+...+...+.|++|++++|.++
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            344555555542 23221  223444555666666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.55  E-value=0.00039  Score=63.77  Aligned_cols=18  Identities=0%  Similarity=0.023  Sum_probs=9.4

Q ss_pred             cCCCCCcEEeCCCCCCCC
Q 047797          312 GNMCSLNQLYLPRNKLSG  329 (927)
Q Consensus       312 ~~l~~L~~L~L~~n~l~~  329 (927)
                      ...++|++|++++|.++.
T Consensus        43 ~~n~~L~~L~Ls~n~l~~   60 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSND   60 (166)
T ss_dssp             TTCCSCCEEECTTSCCCH
T ss_pred             hcCCccCeeeccCCcccH
Confidence            344555555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.39  E-value=0.00046  Score=63.23  Aligned_cols=23  Identities=4%  Similarity=-0.048  Sum_probs=12.7

Q ss_pred             hHHhhcCCCCCCEEEcCCCCCCC
Q 047797          206 WFQVVSQLHSLKTLVLRSCYLPP  228 (927)
Q Consensus       206 ~~~~l~~l~~L~~L~L~~n~l~~  228 (927)
                      +...+...++|++|++++|.++.
T Consensus        38 l~~al~~n~~L~~L~Ls~n~l~~   60 (166)
T d1io0a_          38 CAEALKTNTYVKKFSIVGTRSND   60 (166)
T ss_dssp             HHHHHTTCCSCCEEECTTSCCCH
T ss_pred             HHHHHhcCCccCeeeccCCcccH
Confidence            33444555666666666665543