Citrus Sinensis ID: 047827

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccEEEEEEHHcccHHHHHHHHHHHHHHccccccccEccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mairksnkLSQTAVIKQILKRCSslgkkqsydeqglpldvpkghFVVYVgenrsryiipitfltrpEFQSLLQQAEEEfgfdhdmgltipcEEQVFQSLTSMLR
Flexible Loop (DISEMBL)
mairksnklsqtaVIKQILKRCSSLGKKQSydeqglpldvpkGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR
Low Complexity Region (SEG)
MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR
Disordered region (IsUnstruct)
*************VIKQILKRCS**********QGLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVF********
Disordered Region (DISOPRED)
*************VI***************************GHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR
Disordered Region (DISEMBL)
**********QTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR
Disordered Region (DISPRO)
******NKLSQTAVIKQILKRCSSLGK*******GLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.634	0.717	0.626	4e-19
P33081	82	Auxin-induced protein 15A	no	no	0.634	0.804	0.611	4e-19
P33082	82	Auxin-induced protein X15	no	no	0.644	0.817	0.573	2e-18
P33080	92	Auxin-induced protein X10	no	no	0.778	0.880	0.494	1e-17
P33083	90	Auxin-induced protein 6B	no	no	0.644	0.744	0.573	2e-17
P33079	93	Auxin-induced protein 10A	no	no	0.634	0.709	0.567	8e-17

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 38  LDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVF 96
           LD PKG+  VYVGEN  R++IP++ L +P FQ LL QAEEEFG+DH M GLTIPC E +F
Sbjct: 23  LDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLF 82

Query: 97  QSLTSML 103
           Q +TS L
Sbjct: 83  QHITSCL 89

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 39  DVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQ 97
           D PKG+  VYVGE   R++IP+++L +P FQ LL QAEEEFG+DH M GLTIPC E VFQ
Sbjct: 16  DAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQ 75

Query: 98  SLTSMLR 104
            +TS L 
Sbjct: 76  CITSCLN 82

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 38  LDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVF 96
           +D PKG+  VYVGE   R++IP++++ +P FQ LL QAEEEFG+DH M GLTIPC E+VF
Sbjct: 15  VDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVF 74

Query: 97  QSLTSMLR 104
           Q +T  L 
Sbjct: 75  QRITCCLN 82

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 4/85 (4%)

Query: 21  RCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFG 80
           R +S+   Q+  +    ++VPKG+ VVYVG+   R++IP+++L +P FQ LL QAEEEFG
Sbjct: 9   RKTSIAANQASSKS---VEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFG 65

Query: 81  FDHDM-GLTIPCEEQVFQSLTSMLR 104
           +DH M GLTIPC+E  F ++TS L 
Sbjct: 66  YDHPMGGLTIPCKEDEFLTVTSHLN 90

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 38  LDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDH-DMGLTIPCEEQVF 96
           +DV KG+  VYVGE   R++IP+++L +P FQ LL QAEEEFG+ H + GLTIPC E VF
Sbjct: 23  VDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVF 82

Query: 97  QSLTSMLR 104
           Q +TS L 
Sbjct: 83  QHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 38  LDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVF 96
           +DVPKG+  VYVG+   R+ IP+++L  P FQ LL QAEEEFG+DH M GLTIPC+E+ F
Sbjct: 24  VDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEF 83

Query: 97  QSLTSML 103
            ++T+ L
Sbjct: 84  LNVTAHL 90

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
359492215	104	PREDICTED: indole-3-acetic acid-induced	1.0	1.0	0.884	5e-49
225427810	104	PREDICTED: auxin-induced protein 15A [Vi	1.0	1.0	0.865	2e-47
224080516	104	SAUR family protein [Populus trichocarpa	1.0	1.0	0.855	4e-47
224103303	104	SAUR family protein [Populus trichocarpa	1.0	1.0	0.846	5e-46
356516834	106	PREDICTED: auxin-induced protein 15A-lik	1.0	0.981	0.838	3e-45
224062025	104	SAUR family protein [Populus trichocarpa	0.951	0.951	0.88	4e-45
407260773	104	SAUR family protein [Populus tomentosa]	1.0	1.0	0.826	5e-45
297839445	108	hypothetical protein ARALYDRAFT_476705 [	1.0	0.962	0.814	5e-45
15222294	108	SAUR-like auxin-responsive protein [Arab	1.0	0.962	0.814	5e-45
351734422	106	uncharacterized protein LOC100306339 [Gl	1.0	0.981	0.828	3e-44

>gi|359492215|ref|XP_003634383.1| PREDICTED: indole-3-acetic acid-induced protein ARG7 [Vitis vinifera] gi|147807620|emb|CAN73226.1| hypothetical protein VITISV_026201 [Vitis vinifera]

 Score =  197 bits (502), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/104 (88%), Positives = 100/104 (96%)

Query: 1   MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPI 60
           MA+ KSNKLSQTAV+KQILKRCSSLGKKQ YD++GLPLDVPKGHF VYVGENR+RYI+PI
Sbjct: 1   MALGKSNKLSQTAVLKQILKRCSSLGKKQGYDQEGLPLDVPKGHFAVYVGENRTRYIVPI 60

Query: 61  TFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
           +FLTRPEFQSLLQQAEEEFGFDH+MGLTIPCEE VFQSLTSMLR
Sbjct: 61  SFLTRPEFQSLLQQAEEEFGFDHEMGLTIPCEEVVFQSLTSMLR 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427810|ref|XP_002270504.1| PREDICTED: auxin-induced protein 15A [Vitis vinifera] gi|147856535|emb|CAN82489.1| hypothetical protein VITISV_036184 [Vitis vinifera]

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/104 (86%), Positives = 96/104 (92%)

Query: 1   MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPI 60
           MAIRKSNKL QTAV+KQILKRCSSLGKK  YDE GLPLDVPKGHF VYVGENRSRYI+PI
Sbjct: 1   MAIRKSNKLPQTAVLKQILKRCSSLGKKNGYDEDGLPLDVPKGHFAVYVGENRSRYIVPI 60

Query: 61  TFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
           +FL+ PEFQ LLQ+AEEEFGFDHDMGLTIPCEE VF+SLTSMLR
Sbjct: 61  SFLSHPEFQCLLQRAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080516|ref|XP_002306147.1| SAUR family protein [Populus trichocarpa] gi|222849111|gb|EEE86658.1| SAUR family protein [Populus trichocarpa]

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/104 (85%), Positives = 97/104 (93%)

Query: 1   MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPI 60
           MAIRKS+KL QTAV+KQILKRCSSLGKK  YD+ GLPLDVPKGHF VYVGENRSRYI+PI
Sbjct: 1   MAIRKSHKLPQTAVLKQILKRCSSLGKKHGYDDDGLPLDVPKGHFAVYVGENRSRYIVPI 60

Query: 61  TFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
           +FL+ PEFQSLLQ+AEEEFGFDHDMGLTIPCEE VF+SLTSMLR
Sbjct: 61  SFLSHPEFQSLLQRAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103303|ref|XP_002313002.1| SAUR family protein [Populus trichocarpa] gi|118484681|gb|ABK94211.1| unknown [Populus trichocarpa] gi|222849410|gb|EEE86957.1| SAUR family protein [Populus trichocarpa] gi|407260775|gb|AFT92006.1| SAUR family protein [Populus alba x Populus tremula var. glandulosa] gi|407260799|gb|AFT92018.1| SAUR family protein [Populus alba x Populus tremula var. glandulosa]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 88/104 (84%), Positives = 95/104 (91%)

Query: 1   MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPI 60
           MAIRKS KL QTAV+KQILKRCSSLGKK  YD+ GLPLDVPKGHF VYVGENRSRYI+PI
Sbjct: 1   MAIRKSQKLPQTAVLKQILKRCSSLGKKHGYDDDGLPLDVPKGHFAVYVGENRSRYIVPI 60

Query: 61  TFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
           +FL+ PEFQ LLQ+AEEEFGFDHDMGLTIPCEE VF+SLTSMLR
Sbjct: 61  SFLSHPEFQFLLQRAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516834|ref|XP_003527098.1| PREDICTED: auxin-induced protein 15A-like [Glycine max]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 96/105 (91%), Gaps = 1/105 (0%)

Query: 1   MAIRKSNKL-SQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIP 59
           MAIRKSNK  SQT V+KQILKRCSSLGKK  YD+ GLPLDVPKGHF VYVG+NRSRYI+P
Sbjct: 1   MAIRKSNKTTSQTTVLKQILKRCSSLGKKNGYDDDGLPLDVPKGHFAVYVGQNRSRYIVP 60

Query: 60  ITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
           I+FLT PEFQSLL+QAEEEFGFDH+MGLTIPCEE VF+SLTSMLR
Sbjct: 61  ISFLTHPEFQSLLRQAEEEFGFDHEMGLTIPCEEVVFRSLTSMLR 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062025|ref|XP_002300717.1| SAUR family protein [Populus trichocarpa] gi|222842443|gb|EEE79990.1| SAUR family protein [Populus trichocarpa]

 Score =  184 bits (468), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/100 (88%), Positives = 95/100 (95%), Gaps = 1/100 (1%)

Query: 1   MAIRKSNKLSQTAVIKQILKRCSSLGKKQSY-DEQGLPLDVPKGHFVVYVGENRSRYIIP 59
           MAIRKSNKL QTAVIKQILKRCSSLGKKQ Y D++GLPLDVPKGHFVVYVGENRSRYI+P
Sbjct: 1   MAIRKSNKLPQTAVIKQILKRCSSLGKKQGYHDQEGLPLDVPKGHFVVYVGENRSRYIVP 60

Query: 60  ITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSL 99
           I+ L+RPEFQ+LLQQAEEEFGFDHDMGLTIPCEE VFQS+
Sbjct: 61  ISILSRPEFQTLLQQAEEEFGFDHDMGLTIPCEEVVFQSI 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407260773|gb|AFT92005.1| SAUR family protein [Populus tomentosa] gi|407260797|gb|AFT92017.1| SAUR family protein [Populus tomentosa]

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 86/104 (82%), Positives = 94/104 (90%)

Query: 1   MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPI 60
           MAIRKS KL QTAV+KQILKRCSSLGKK  YD+ GLPLDVPKGHF VYVGENRSRYI+PI
Sbjct: 1   MAIRKSQKLPQTAVLKQILKRCSSLGKKHGYDDDGLPLDVPKGHFAVYVGENRSRYIVPI 60

Query: 61  TFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
           +FL+ P+FQ LLQ+AEEEFGFDHDMGLT PCEE VF+SLTSMLR
Sbjct: 61  SFLSHPQFQFLLQRAEEEFGFDHDMGLTFPCEEVVFRSLTSMLR 104

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839445|ref|XP_002887604.1| hypothetical protein ARALYDRAFT_476705 [Arabidopsis lyrata subsp. lyrata] gi|297333445|gb|EFH63863.1| hypothetical protein ARALYDRAFT_476705 [Arabidopsis lyrata subsp. lyrata]

 Score =  184 bits (468), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 98/108 (90%), Gaps = 4/108 (3%)

Query: 1   MAIRKSNKLSQTAVIKQILKRCSSLGKKQSY----DEQGLPLDVPKGHFVVYVGENRSRY 56
           MA++K+NKL+QTA+IKQILKRCSSLGKKQS     DE G PL+VPKGHFVVYVGENR RY
Sbjct: 1   MAMKKANKLTQTAMIKQILKRCSSLGKKQSNVYSEDENGSPLNVPKGHFVVYVGENRVRY 60

Query: 57  IIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
           ++PI+FLTRPEFQ LLQQAEEEFGFDHDMGLTIPCEE VF+SLTSMLR
Sbjct: 61  VVPISFLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 108

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222294|ref|NP_177688.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|9369378|gb|AAF87127.1|AC006434_23 F10A5.21 [Arabidopsis thaliana] gi|92856545|gb|ABE77397.1| At1g75580 [Arabidopsis thaliana] gi|332197614|gb|AEE35735.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score =  184 bits (467), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 98/108 (90%), Gaps = 4/108 (3%)

Query: 1   MAIRKSNKLSQTAVIKQILKRCSSLGKKQSY----DEQGLPLDVPKGHFVVYVGENRSRY 56
           MA++K+NKL+QTA+IKQILKRCSSLGKKQS     DE G PL+VPKGHFVVYVGENR RY
Sbjct: 1   MAMKKANKLTQTAMIKQILKRCSSLGKKQSNVYGEDENGSPLNVPKGHFVVYVGENRVRY 60

Query: 57  IIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
           ++PI+FLTRPEFQ LLQQAEEEFGFDHDMGLTIPCEE VF+SLTSMLR
Sbjct: 61  VVPISFLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 108

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734422|ref|NP_001237264.1| uncharacterized protein LOC100306339 [Glycine max] gi|255628243|gb|ACU14466.1| unknown [Glycine max]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 95/105 (90%), Gaps = 1/105 (0%)

Query: 1   MAIRKSNKL-SQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIP 59
           MAIRKSNK  SQT V+KQILKRCSSLGKK  YD+ GLPLDVPKGHF VYVG+NRSRYI+P
Sbjct: 1   MAIRKSNKTTSQTTVLKQILKRCSSLGKKNGYDDDGLPLDVPKGHFAVYVGQNRSRYIVP 60

Query: 60  ITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
           I+FLT PEFQS L+QAEEEFGFDH+MGLTIPCEE VF+SLTSMLR
Sbjct: 61  ISFLTHPEFQSPLRQAEEEFGFDHEMGLTIPCEEVVFRSLTSMLR 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2005709	108	AT1G75580 "AT1G75580" [Arabido	1.0	0.962	0.824	1.5e-42
TAIR|locus:2139589	107	AT4G34760 "AT4G34760" [Arabido	1.0	0.971	0.794	5.9e-41
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.990	0.990	0.776	5.9e-41
TAIR|locus:2141786	105	AT4G38860 "AT4G38860" [Arabido	1.0	0.990	0.790	9.6e-41
TAIR|locus:2013074	117	AT1G19830 "AT1G19830" [Arabido	1.0	0.888	0.725	1.3e-36
TAIR|locus:2045086	108	AT2G16580 "AT2G16580" [Arabido	0.980	0.944	0.714	1.7e-36
TAIR|locus:2135144	104	SAUR9 "AT4G36110" [Arabidopsis	0.961	0.961	0.685	1.6e-31
TAIR|locus:2060928	112	AT2G18010 "AT2G18010" [Arabido	1.0	0.928	0.642	1.8e-30
TAIR|locus:2155016	99	AT5G66260 "AT5G66260" [Arabido	0.836	0.878	0.651	1.8e-25
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.903	0.949	0.495	1.9e-19

TAIR|locus:2005709 AT1G75580 "AT1G75580" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 89/108 (82%), Positives = 99/108 (91%)

Query:     1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQS--Y--DEQGLPLDVPKGHFVVYVGENRSRY 56
             MA++K+NKL+QTA+IKQILKRCSSLGKKQS  Y  DE G PL+VPKGHFVVYVGENR RY
Sbjct:     1 MAMKKANKLTQTAMIKQILKRCSSLGKKQSNVYGEDENGSPLNVPKGHFVVYVGENRVRY 60

Query:    57 IIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
             ++PI+FLTRPEFQ LLQQAEEEFGFDHDMGLTIPCEE VF+SLTSMLR
Sbjct:    61 VVPISFLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMLR 108

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139589 AT4G34760 "AT4G34760" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 85/107 (79%), Positives = 97/107 (90%)

Query:     1 MAI-RKSNKLSQTAVIKQILKRCSSLGKKQS--YDEQGLPLDVPKGHFVVYVGENRSRYI 57
             MAI +K++KL+QTA++KQILKRCSSLGKK    YDE  LPLDVPKGHF VYVGENRSRYI
Sbjct:     1 MAIMKKTSKLTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYI 60

Query:    58 IPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
             +PI+FLT PEFQSLLQ+AEEEFGFDHDMGLTIPC+E VFQ+LTSM+R
Sbjct:    61 VPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMIR 107

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 80/103 (77%), Positives = 95/103 (92%)

Query:     1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPI 60
             MA+++S+KL+QTA++KQILKRCSSL K Q YDE GLP+DVPKGHF VYVGE RSRYI+PI
Sbjct:     1 MAVKRSSKLTQTAMLKQILKRCSSLAKNQCYDEDGLPVDVPKGHFPVYVGEKRSRYIVPI 60

Query:    61 TFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSML 103
             +FLT P+F+SLLQQAEEEFGF+HDMGLTIPCEE VF+SLTSM+
Sbjct:    61 SFLTHPKFKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSLTSMI 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141786 AT4G38860 "AT4G38860" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 83/105 (79%), Positives = 95/105 (90%)

Query:     1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPI 60
             MA+++S+KL+QTA++KQILKRCSSLGKKQ YDE+GLPLDVPKGHF VYVGE R+RYI+PI
Sbjct:     1 MAVKRSSKLTQTAMLKQILKRCSSLGKKQCYDEEGLPLDVPKGHFPVYVGEKRTRYIVPI 60

Query:    61 TFLTRPEFQSLLQQAEEEFGFDHDMG-LTIPCEEQVFQSLTSMLR 104
             +FLT PEF  LLQQAEEEFGF HDMG LTIPCEE VF SLTSM+R
Sbjct:    61 SFLTHPEFLILLQQAEEEFGFRHDMGGLTIPCEEVVFLSLTSMIR 105

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013074 AT1G19830 "AT1G19830" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 82/113 (72%), Positives = 92/113 (81%)

Query:     1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQS--------YDEQGLPLDVPKGHFVVYVGEN 52
             MAI   +KL+QT +IKQILKRCSSLGKKQS        +D   LPLDVPKGHFVVYVG N
Sbjct:     1 MAIINRSKLTQTTMIKQILKRCSSLGKKQSSEYNDTHEHDGDSLPLDVPKGHFVVYVGGN 60

Query:    53 RSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSL-TSMLR 104
             R RY++PI+FLTRPEFQ LLQQAEEEFGFDH+MGLTIPCEE  F+SL TSML+
Sbjct:    61 RVRYVLPISFLTRPEFQLLLQQAEEEFGFDHNMGLTIPCEEVAFKSLITSMLQ 113

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2045086 AT2G16580 "AT2G16580" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 75/105 (71%), Positives = 89/105 (84%)

Query:     3 IRKSNKLSQTAVIKQILKRCSSLGKKQS---YDEQGLPLDVPKGHFVVYVGENRSRYIIP 59
             ++KS KL+QTA+++QILKRCSSLGKK     Y+E  LPLDVPKGHF VYVG NRSRYI+P
Sbjct:     4 LKKSTKLAQTAMLRQILKRCSSLGKKNGGGGYEEVDLPLDVPKGHFPVYVGHNRSRYIVP 63

Query:    60 ITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
             I+FLT  +FQ LL++AEEEFGFDHDMGLTIPC+E  FQ LTSM+R
Sbjct:    64 ISFLTNLDFQCLLRRAEEEFGFDHDMGLTIPCDELFFQDLTSMIR 108

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2135144 SAUR9 "AT4G36110" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 74/108 (68%), Positives = 86/108 (79%)

Query:     1 MAIRKSNK--LSQTAVIKQILKRCSSLGKKQSYDEQGLPL--DVPKGHFVVYVGENRSRY 56
             MAI+KSNK  LSQ A +KQILKRCSSLGKK     QG     DVPKGHF VYVG++RSRY
Sbjct:     1 MAIKKSNKAALSQAASLKQILKRCSSLGKKN----QGNCYFNDVPKGHFPVYVGQHRSRY 56

Query:    57 IIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
             ++PI++L   EFQSLLQ AEEEFGF+H+MGLTIPC+E VF+SL SM R
Sbjct:    57 VVPISWLDHHEFQSLLQLAEEEFGFEHEMGLTIPCDEVVFRSLISMFR 104

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2060928 AT2G18010 "AT2G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 72/112 (64%), Positives = 86/112 (76%)

Query:     1 MAIRKSNKL--SQTAVIKQILKRCSSLGKKQS-----YD-EQGLPLDVPKGHFVVYVGEN 52
             MAI++S+K   SQ A IKQI+KRCSSL K ++     Y+ E  LP DVPKGHF VYVG N
Sbjct:     1 MAIKRSSKATSSQAASIKQIVKRCSSLRKMKNVNGCYYNQEDDLPQDVPKGHFPVYVGPN 60

Query:    53 RSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
             RSRYI+PI++L   EFQ+LL+ AEEEFGFDHDMGLTIPC+E  F+SL SM R
Sbjct:    61 RSRYIVPISWLHHSEFQTLLRLAEEEFGFDHDMGLTIPCDEVFFRSLISMFR 112

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2155016 AT5G66260 "AT5G66260" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 58/89 (65%), Positives = 69/89 (77%)

Query:    15 IKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQ 74
             +KQ+LKRCSSLGKK S D       VPKGHFVVYVG +RSR++IPI+FLT P FQ LLQQ
Sbjct:    11 LKQMLKRCSSLGKKSSVDVNFN--GVPKGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQ 68

Query:    75 AEEEFGFDHDMGLTIPCEEQVFQSLTSML 103
             +EEEFGF  D GLTIPC+E  F++L S +
Sbjct:    69 SEEEFGFFQDNGLTIPCDEHFFRALISSI 97

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 51/103 (49%), Positives = 66/103 (64%)

Query:     1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGE-NRSRYIIP 59
             MAIR    L  +   KQIL++   L    S       LDVPKG+  VYVGE N  R+++P
Sbjct:     1 MAIRIPRVLQSS---KQILRQAKLLSSSSSSSS----LDVPKGYLAVYVGEQNMKRFVVP 53

Query:    60 ITFLTRPEFQSLLQQAEEEFGFDHDMG-LTIPCEEQVFQSLTS 101
             +++L +P FQ LL++AEEEFGFDH MG LTIPC E++F  L S
Sbjct:    54 VSYLDQPSFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLAS 96

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035985001 SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgun sequence); (104 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	2e-76
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-36
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-20
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	8e-17

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score =  220 bits (561), Expect = 2e-76
 Identities = 91/104 (87%), Positives = 99/104 (95%)

Query: 1   MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPI 60
           MAI+KSNKL+QTA++KQILKRCSSLGKKQ YDE GLPLDVPKGHF VYVGENRSRYI+PI
Sbjct: 1   MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPI 60

Query: 61  TFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
           +FLT PEFQSLLQQAEEEFGFDHDMGLTIPCEE VF+SLTSM+R
Sbjct: 61  SFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMIR 104

Length = 104

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  119 bits (300), Expect = 1e-36
 Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 1/98 (1%)

Query: 7   NKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPITFLTRP 66
           ++L + +  K+ +   +S   + S  +     DVPKGHF VYVGE   R+++PI++L  P
Sbjct: 3   SRLKKASSAKKWILSAASGRSRGSSSKSS-SADVPKGHFAVYVGEETRRFVVPISYLNHP 61

Query: 67  EFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR 104
            FQ LL +AEEEFGFD D GLTIPC+  VF+ L  ML 
Sbjct: 62  LFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 78.2 bits (192), Expect = 2e-20
 Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 7/100 (7%)

Query: 7   NKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGEN----RSRYIIPITF 62
           ++ + +   KQILK  S   + ++         VPKGH  VYVGE     + R+++PI+F
Sbjct: 4   SRFAISNATKQILKLNSLANRNRTSSSSSD--HVPKGHVAVYVGEQIEMEKKRFVVPISF 61

Query: 63  LTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTS 101
           L  P F+  L +AEEEFGF+H M GLTIPC E+VF  L +
Sbjct: 62  LNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA 101

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 69.4 bits (169), Expect = 8e-17
 Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 3/65 (4%)

Query: 40  VPKGHFVVYVGEN--RSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVF 96
           VPKGH  VYVGE   + R+++PI++L  P F+  L +AEEE GF H M GLTIPC E+ F
Sbjct: 39  VPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESF 98

Query: 97  QSLTS 101
             L +
Sbjct: 99  LHLIT 103

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	89.23
PRK02899	197	adaptor protein; Provisional	89.21
PRK02315	233	adaptor protein; Provisional	86.33
PF05389	220	MecA: Negative regulator of genetic competence (Me	83.09
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	80.8

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.9e-48  Score=271.39  Aligned_cols=104  Identities=88%  Similarity=1.363  Sum_probs=100.0

Q ss_pred             CCcccccchhhhHHHHHHHhhhhccCCCcccCCCCCCCCCCCceEEEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcC
Q 047827            1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFG   80 (104)
Q Consensus         1 m~~~~~~~~~~~~~~k~~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG   80 (104)
                      |+++|++||.|++++||+|+||.|+++.+.++....|.+||+||||||||++++||+||++|||||+|++||++||||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG   80 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFG   80 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhC
Confidence            89999999999999999999999999987776667889999999999999999999999999999999999999999999


Q ss_pred             CCCCCceEecCcHHHHHHHHhhhC
Q 047827           81 FDHDMGLTIPCEEQVFQSLTSMLR  104 (104)
Q Consensus        81 ~~~~g~l~iPC~~~~Fe~vl~~l~  104 (104)
                      |+|+|+|+|||+++.|++++|+|+
T Consensus        81 f~~~G~L~IPC~~~~Fe~ll~~i~  104 (104)
T PLN03090         81 FDHDMGLTIPCEEVVFRSLTSMIR  104 (104)
T ss_pred             CCCCCcEEEeCCHHHHHHHHHHhC
Confidence            999999999999999999999985

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=2.8e-38  Score=218.07  Aligned_cols=68  Identities=57%  Similarity=1.062  Sum_probs=66.3

Q ss_pred             CCCCCCceEEEEEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCCCCCceEecCcHHHHHHHHhhhC
Q 047827           37 PLDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSMLR  104 (104)
Q Consensus        37 ~~~vpkG~~aVyVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~~~g~l~iPC~~~~Fe~vl~~l~  104 (104)
                      ..++|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|||+++.|++++|+||
T Consensus        33 ~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            47899999999999999999999999999999999999999999999999999999999999999996

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=3.8e-38  Score=219.81  Aligned_cols=97  Identities=45%  Similarity=0.797  Sum_probs=81.6

Q ss_pred             CCcccccchhhhHHHHHHHhhhhccCCCcccCCCCCCCCCCCceEEEEEcC----CceEEEEeccCCCChHHHHHHHHHH
Q 047827            1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQSYDEQGLPLDVPKGHFVVYVGE----NRSRYIIPITFLTRPEFQSLLQQAE   76 (104)
Q Consensus         1 m~~~~~~~~~~~~~~k~~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~----e~~RfvVp~~yL~hP~F~~LL~~ae   76 (104)
                      ||+++.+.-   ..+||+++|+. +++... +.+..+.+|||||||||||+    +++|||||++|||||+|++||++||
T Consensus         1 ~~~~~~~~~---~~~k~~~~~~~-~~~~~~-~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~Ae   75 (105)
T PLN03220          1 MGLSRFAIS---NATKQILKLNS-LANRNR-TSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAE   75 (105)
T ss_pred             CCcchhhhH---HHHHHHHHHHh-hccccc-ccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHH
Confidence            777776543   36799999998 555422 12235678999999999997    5899999999999999999999999


Q ss_pred             HhcCCCC-CCceEecCcHHHHHHHHhh
Q 047827           77 EEFGFDH-DMGLTIPCEEQVFQSLTSM  102 (104)
Q Consensus        77 eEfG~~~-~g~l~iPC~~~~Fe~vl~~  102 (104)
                      |||||+| +|+|+|||+++.|++++..
T Consensus        76 EEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         76 EEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             HHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            9999998 5999999999999999863

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=1.3e-36  Score=213.00  Aligned_cols=98  Identities=43%  Similarity=0.675  Sum_probs=82.8

Q ss_pred             CCcccccchhhhHHHHHHHhhhhccCCCccc---CCCCCCCCCCCceEEEEEcC--CceEEEEeccCCCChHHHHHHHHH
Q 047827            1 MAIRKSNKLSQTAVIKQILKRCSSLGKKQSY---DEQGLPLDVPKGHFVVYVGE--NRSRYIIPITFLTRPEFQSLLQQA   75 (104)
Q Consensus         1 m~~~~~~~~~~~~~~k~~l~r~~s~~~~~~~---~~~~~~~~vpkG~~aVyVG~--e~~RfvVp~~yL~hP~F~~LL~~a   75 (104)
                      |+++++...    +.|||+|..+..+++...   +..+.+.+|||||+|||||+  |++|||||++|||||+|++||++|
T Consensus         1 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~A   76 (108)
T PLN03219          1 MGLMRSMLP----NAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRA   76 (108)
T ss_pred             CchHHHHHh----hHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHH
Confidence            666666544    789999877666665432   22345678999999999997  589999999999999999999999


Q ss_pred             HHhcCCCC-CCceEecCcHHHHHHHHhh
Q 047827           76 EEEFGFDH-DMGLTIPCEEQVFQSLTSM  102 (104)
Q Consensus        76 eeEfG~~~-~g~l~iPC~~~~Fe~vl~~  102 (104)
                      ||||||++ +|+|+|||+++.|++|++.
T Consensus        77 eEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         77 EEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             HHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            99999997 5999999999999999974

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=89.23  E-value=0.34  Score=31.44  Aligned_cols=55  Identities=20%  Similarity=0.229  Sum_probs=41.0

Q ss_pred             EEEcCCceEEEEeccCCC-Ch--HHHHHHHHHHHhcCCCCCCceEecCcHHHHHHHHhhh
Q 047827           47 VYVGENRSRYIIPITFLT-RP--EFQSLLQQAEEEFGFDHDMGLTIPCEEQVFQSLTSML  103 (104)
Q Consensus        47 VyVG~e~~RfvVp~~yL~-hP--~F~~LL~~aeeEfG~~~~g~l~iPC~~~~Fe~vl~~l  103 (104)
                      +-||.  ++|.++.+.|. +|  .|..+++.......-+.+|.+-|-++...|++|+.-|
T Consensus         3 lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~yl   60 (94)
T PF02214_consen    3 LNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYL   60 (94)
T ss_dssp             EEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHH
T ss_pred             EEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHH
Confidence            45775  79999998887 54  7888888652222224568999999999999999865

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=89.21  E-value=0.32  Score=36.95  Aligned_cols=24  Identities=29%  Similarity=0.663  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHhcCCCCCCceEe
Q 047827           66 PEFQSLLQQAEEEFGFDHDMGLTI   89 (104)
Q Consensus        66 P~F~~LL~~aeeEfG~~~~g~l~i   89 (104)
                      -+|.++|++|..|+||..+|||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccCCeEEE
Confidence            578888999999999999999875

>PRK02315 adaptor protein; Provisional

Probab=86.33  E-value=0.57  Score=36.33  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHHHhcCCCCCCceEe
Q 047827           66 PEFQSLLQQAEEEFGFDHDMGLTI   89 (104)
Q Consensus        66 P~F~~LL~~aeeEfG~~~~g~l~i   89 (104)
                      -+|.++|++|..|+||..+|||+|
T Consensus        39 ~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         39 EFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHhccccCcccCCeEEE
Confidence            589999999999999999999986

>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation

Probab=83.09  E-value=0.37  Score=36.49  Aligned_cols=25  Identities=44%  Similarity=0.673  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCceEe
Q 047827           65 RPEFQSLLQQAEEEFGFDHDMGLTI   89 (104)
Q Consensus        65 hP~F~~LL~~aeeEfG~~~~g~l~i   89 (104)
                      +-+|.++|++|.+|+||+.+|+|++
T Consensus        38 e~fF~~ileea~~e~~F~~~~~l~~   62 (220)
T PF05389_consen   38 EEFFYSILEEADEEHGFENDGPLTF   62 (220)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHhccccCcccCCeEEE
Confidence            3689999999999999999998875

It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.

>smart00666 PB1 PB1 domain

Probab=80.80  E-value=5  Score=25.13  Aligned_cols=48  Identities=21%  Similarity=0.414  Sum_probs=35.4

Q ss_pred             EEcCCceEEEEeccCCCChHHHHHHHHHHHhcCCC----------CCC-ceEecCcHHHHHHHH
Q 047827           48 YVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFD----------HDM-GLTIPCEEQVFQSLT  100 (104)
Q Consensus        48 yVG~e~~RfvVp~~yL~hP~F~~LL~~aeeEfG~~----------~~g-~l~iPC~~~~Fe~vl  100 (104)
                      +-|++.+||.+|.    ...|.+|..+..+-|+..          .+| .++|.++.+ +...+
T Consensus         7 ~~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~D-l~~a~   65 (81)
T smart00666        7 RYGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDED-LEEAI   65 (81)
T ss_pred             EECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHH-HHHHH
Confidence            3377889999986    788999999999999874          245 677888653 34333

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00