Citrus Sinensis ID: 047829
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 407 | ||||||
| 255542484 | 2460 | phosphoprotein phosphatase, putative [Ri | 0.968 | 0.160 | 0.345 | 3e-49 | |
| 224110992 | 2359 | cc-nbs-lrr resistance protein [Populus t | 0.582 | 0.100 | 0.450 | 5e-44 | |
| 358344903 | 2248 | Cc-nbs-lrr resistance protein [Medicago | 0.832 | 0.150 | 0.321 | 1e-29 | |
| 359488288 | 1340 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.670 | 0.203 | 0.357 | 3e-27 | |
| 358344895 | 906 | Resistance protein RGC2, partial [Medica | 0.700 | 0.314 | 0.340 | 8e-27 | |
| 357439633 | 1039 | Rpp4 candidate [Medicago truncatula] gi| | 0.692 | 0.271 | 0.286 | 1e-25 | |
| 147787802 | 1517 | hypothetical protein VITISV_005047 [Viti | 0.916 | 0.245 | 0.281 | 1e-25 | |
| 358344919 | 1995 | NBS/LRR resistance protein-like protein | 0.464 | 0.094 | 0.407 | 3e-24 | |
| 224083436 | 758 | predicted protein [Populus trichocarpa] | 0.722 | 0.387 | 0.295 | 3e-24 | |
| 358344279 | 1053 | Rpp4 candidate [Medicago truncatula] gi| | 0.486 | 0.188 | 0.402 | 4e-24 |
| >gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 238/452 (52%), Gaps = 58/452 (12%)
Query: 1 EIVGHVGEEVKENRIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF 60
EIV + G+E+ E+ I FS+L+ L LD L RLT+ C N ++FPSLE + VT CP M+ F
Sbjct: 1467 EIVANEGDEM-ESEITFSKLESLRLDDLTRLTTVCSVNCRVKFPSLEELIVTACPRMEFF 1525
Query: 61 SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKE 120
S GI++ PKL KV + +EG+ + G+LN+T Q+ Y+EM+G + +LQLS FP L E
Sbjct: 1526 SHGIITAPKLEKVSLT--KEGDKWRSVGDLNTTTQQLYREMVGLNGVQHLQLSEFPTLVE 1583
Query: 121 IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEE 180
WH Q LP FF NL LVVD+C+ SS++P NLL LN L LEVRNCDSL +VF E
Sbjct: 1584 KWHDQ-LPAYFFYNLKSLVVDNCSFPSSSVPSNLLPFLNELEVLEVRNCDSLAKVFDF-E 1641
Query: 181 LSAKEEHIGPLFPSLSWLRLIDLPKLKR-FCNFTGNIIELPMFWSLTIENCPDMETFISN 239
S + G L P+L LIDLP+L+ + + + I L I NC + +I N
Sbjct: 1642 WSNDYGYAGHL-PNLKKFHLIDLPRLRHIWDDISSEISGFKNLTVLNIHNCSSLR-YIFN 1699
Query: 240 STSILHMTADNKEPQKLKSEENLLVADQIQHLFDE-----KVTFPQLRFLELSRLHKVQH 294
+ + + Q+++ LV I+ + ++ FP L+ + L L + +
Sbjct: 1700 PIICMGLV----QLQEVEVRNCALVQAIIREGLAKEEAPNEIIFPLLKSISLESLPSLIN 1755
Query: 295 LWKENA----ESNKVFANLKSPEISECS-----------------------KLQKL---- 323
+ + S K + P C+ K+ KL
Sbjct: 1756 FFSGSGIVRCPSLKEITIVNCPATFTCTLLRESESNATDEIIETKVEFSELKILKLFSIN 1815
Query: 324 VPASWH---------LENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEII 374
+ WH +++LA+L V C L + L+ S ++LV+L+++++ +C+MMEE+I
Sbjct: 1816 IEKIWHAHQLEMYASIQHLASLTVDGCGHLKHALSSSMVQTLVHLKKLEVCNCRMMEEVI 1875
Query: 375 QSQ-VGEEAEDCIVFRKLEYLGLDCLPSLTSF 405
++ EE+ ++ R+LE+L L LP L F
Sbjct: 1876 ATEGFEEESTSRMLLRQLEFLKLKDLPELAQF 1907
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 150/244 (61%), Gaps = 7/244 (2%)
Query: 1 EIVGHVGEEVKENRIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF 60
EIV G E+ ++ I FS+L++L L L LTSFC NY FPSL+ + V CP M+ F
Sbjct: 1557 EIVAKQGGEINDD-IIFSKLEYLELVRLENLTSFCPGNYNFIFPSLKGMVVEQCPKMRIF 1615
Query: 61 SQGILSTPKLHKVQVIVKEEGE-LYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLK 119
SQGI STPKL V E +H GNLN+T+Q+ Y +M+G IW L+LS FP+LK
Sbjct: 1616 SQGISSTPKLQGVYWKKDSMNEKCWH--GNLNATLQQLYTKMVGCNGIWSLKLSDFPQLK 1673
Query: 120 EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLE 179
+ WHGQ LP + F+NL L VD+C +S+AIP N+L+ +NNL +L V+NC+SLE VF LE
Sbjct: 1674 DRWHGQ-LPFNCFSNLGNLTVDNCAIVSTAIPSNILKFMNNLKYLHVKNCESLEGVFDLE 1732
Query: 180 ELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFT-GNIIELPMFWSLTIENCPDMETFIS 238
LSA+ + L P+L L L+DLP+L+ N I++ L + NC + S
Sbjct: 1733 GLSAQAGY-DRLLPNLQELHLVDLPELRHIWNRDLPGILDFRNLKRLKVHNCSSLRNIFS 1791
Query: 239 NSTS 242
S +
Sbjct: 1792 PSMA 1795
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358344903|ref|XP_003636525.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355502460|gb|AES83663.1| Cc-nbs-lrr resistance protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 195/380 (51%), Gaps = 41/380 (10%)
Query: 15 IAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQ 74
IAF L+ L L+ LP L FC ++FPSLE+V V CP MK FS G STP L KV+
Sbjct: 1443 IAFVSLQILNLECLPSLVKFCSSECFMKFPSLEKVIVGECPRMKIFSAGHTSTPILQKVK 1502
Query: 75 VIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNN 134
+ E +H +GNLN+TI +++ +GF +LQLS +P LKE+W+GQ + F +
Sbjct: 1503 --IAENDSEWHWKGNLNNTIYNMFEDKVGFVSFKHLQLSEYPELKELWYGQH-EHNTFRS 1559
Query: 135 LCKLVVDDCTNMSSAI-PVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFP 193
L LVV C +S + NLL L NL L+V +C+SLE VF L++ AKE +
Sbjct: 1560 LKYLVVHKCDFLSDVLFQPNLLEVLMNLEELDVEDCNSLEAVFDLKDEFAKEIVVRN-ST 1618
Query: 194 SLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEP 253
L L++ +LPKLK W + P ++T +S L+ D+
Sbjct: 1619 QLKKLKISNLPKLKH-------------VWKE--DAFPSLDTLKLSSLLNLNKVWDDNH- 1662
Query: 254 QKLKSEENLLVAD--QIQHLFDEKV--TFPQLRFLELSRLHKVQHLWKENAESNKVFANL 309
Q + + +L+V + +++LF + +F L+ LE+S ++ + + +N L
Sbjct: 1663 QSMCNLTSLIVDNCVGLKYLFPSTLVKSFMNLKHLEISNCPMMEEIIAKKERNNA----L 1718
Query: 310 KSPEISECSKLQKLV-------PASWH--LENLATLKVSKCHGLINLLTLSTSESLVNLE 360
K + KL+K++ + WH E L L+V+ C ++ + S + LE
Sbjct: 1719 KEVHL---LKLEKIILKDMDNLKSIWHHQFETLKMLEVNNCKKIVVVFPSSMQNTYNELE 1775
Query: 361 RMKITDCKMMEEIIQSQVGE 380
++++T+C ++EEI + E
Sbjct: 1776 KLEVTNCALVEEIFELNFNE 1795
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 32/305 (10%)
Query: 120 EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLE 179
E+W+GQ L +SF NL L++ +C ++ P +L + L NL L+V NC+ LEE+F LE
Sbjct: 920 EVWNGQ-LSLSF-GNLRSLMMQNCMSLLKVFPSSLFQSLQNLEVLKVENCNQLEEIFDLE 977
Query: 180 ELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIEL-----PM--FWSLTIEN-CP 231
L+ H+G L P L + L L+ IIE+ P+ F L + + C
Sbjct: 978 GLNVDGGHVG-LLPKLEEMCLTGCIPLEELILDGSRIIEIWQEQFPVESFCRLRVLSICE 1036
Query: 232 DMETFISNSTSILHMTADNKEPQKLKSEENLLVAD--------QIQHLFDEKVTF---PQ 280
+ + +S+L Q+L + E L V Q++ L DE+ F +
Sbjct: 1037 YRDILVVIPSSML---------QRLHTLEKLTVRSCGSVKEVVQLEGLVDEENHFRALAR 1087
Query: 281 LRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSK 340
LR LEL+ L ++++LWKEN+ F NL+ +I +C L LVP+S NLA+L +S
Sbjct: 1088 LRELELNDLPELKYLWKENSNVGPHFQNLEILKIWDCDNLMNLVPSSVSFHNLASLDISY 1147
Query: 341 CHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400
C LINLL ++SLV + KI MM+E++ ++ GE A D I F KLE + L LP
Sbjct: 1148 CCSLINLLPPLIAKSLVQHKIFKIGRSDMMKEVVANE-GENAGDEITFCKLEEIELCVLP 1206
Query: 401 SLTSF 405
+LTSF
Sbjct: 1207 NLTSF 1211
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358344895|ref|XP_003636521.1| Resistance protein RGC2, partial [Medicago truncatula] gi|355502456|gb|AES83659.1| Resistance protein RGC2, partial [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 159/297 (53%), Gaps = 12/297 (4%)
Query: 110 LQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169
L+LS P+LK +W F NL + V DC ++ S P+++ R + L L V NC
Sbjct: 116 LKLSNLPKLKHVWKEDPHYTMRFQNLSVVSVADCKSLISLFPLSVARDMMQLQSLLVSNC 175
Query: 170 DSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTG-NIIELPMFWSLTIE 228
+EE+ EE +E + +FP L+ + L +L KLK F F G + ++ ++ +
Sbjct: 176 -GIEEIVVKEE--GPDEMVKFVFPHLTSIELDNLTKLKAF--FVGVHSLQCKSLKTIKLF 230
Query: 229 NCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSR 288
CP +E F + L ++ N E Q + + + L V ++ L + PQ R LEL +
Sbjct: 231 KCPRIELFKAEPLK-LQESSKNVE-QNISTYQPLFVFEE--ELLTSVESTPQFRELELLQ 286
Query: 289 LHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLL 348
LHK++++ KE + + L+S ++ +CS L KLVP+S + L+V+ C+GLINL+
Sbjct: 287 LHKLKYICKEGFQMDPFLHFLESIDVCQCSSLIKLVPSSVTFSYMTYLEVTNCNGLINLI 346
Query: 349 TLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF 405
T ST++SLV L MKI C +E+I+ + E E IVF L+ L L L L F
Sbjct: 347 THSTAKSLVKLTTMKIEMCNWLEDIVNGKEDETNE--IVFCSLQTLELISLQRLIRF 401
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 74/356 (20%)
Query: 110 LQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169
L+LS P+LK +W F NL ++ V++CT++ S P+ + R + L L V NC
Sbjct: 112 LKLSNVPKLKHVWKEDPHDTMRFQNLSEVSVEECTSLISIFPLTVARDMMQLQSLRVSNC 171
Query: 170 DSLEEVFHLEELSAKEEH----IGPLFPSLSWLRLIDLPKLKRFCNFTG-NIIELPMFWS 224
+EE+ AKEE + +F L+++RL LPKLK F F G + ++ +
Sbjct: 172 G-------IEEIVAKEEGTNEIVNFVFSHLTFIRLELLPKLKAF--FVGVHSLQCKSLKT 222
Query: 225 LTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQH-------------- 270
+ + CP +E F T + H + + + + + L V ++ Q+
Sbjct: 223 IYLFGCPKIELF---KTELRHQESSRSDVLNISTYQPLFVIEESQYSGVQFNNVKHIDVC 279
Query: 271 -LFDEKVTF----------------------------------------PQLRFLELSRL 289
+ E+ TF P+L+ LEL +L
Sbjct: 280 EFYTEEATFPYWFLKNVPSLESLLVQWSLFTEIFQGEQLISTEKETQISPRLKQLELGQL 339
Query: 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLT 349
H++Q++ KE + + + ++S ++ CS L KLVP+S L L+V+ C+GLINL+T
Sbjct: 340 HRLQYICKEGFKMDPILHFIESINVNHCSSLIKLVPSSVTFTYLTYLEVTSCNGLINLIT 399
Query: 350 LSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF 405
ST++SLV L MKI C ++E+I+ + E E I F L+ L L LP + F
Sbjct: 400 YSTAKSLVKLTTMKIKMCNLLEDIVNGKEDETKE--IEFCSLQSLELISLPRVCRF 453
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 128/455 (28%), Positives = 216/455 (47%), Gaps = 82/455 (18%)
Query: 11 KENRIAFSELKFL---ILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDM-KTFSQGILS 66
K ++AF L+FL LD + ++ L + F L+RV V C ++ F +L+
Sbjct: 934 KLEQVAFPSLEFLNIVGLDNVKKIWHSQLPQDS--FSKLKRVKVATCGELLNIFPSSMLN 991
Query: 67 TPKLHKVQVIVKEE----GELYHREG-NLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121
+L ++ + E+ E++ EG N+N KE + + L L P++++I
Sbjct: 992 --RLQSLRFLKAEDCSSLEEVFDVEGTNVN------VKEGVTVTQLSQLILRSLPKVEKI 1043
Query: 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEEL 181
W+ + F NL + +D+C ++ + P +L+R L L L V C +EE+
Sbjct: 1044 WNEDPHGILNFQNLQSITIDECQSLKNLFPASLVRDLVQLQELHVLCCG-------IEEI 1096
Query: 182 SAKEEHIGP----LFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFW----SLTIENCPDM 233
AK+ + +FP ++ L L L +L+ F + G P +W LT+ C +
Sbjct: 1097 VAKDNGVDTQATFVFPKVTSLELSYLHQLRSF--YPG---AHPSWWPSLKQLTVRECYKV 1151
Query: 234 ETFISNSTSI--------LHMTADNKEPQKLKS-EENLLVADQIQHLFDEKV---TFPQL 281
F + + L M +P + + EE L ++ ++ E+ +FP+L
Sbjct: 1152 NVFAFENPTFRQRHHEGNLDMPLSLLQPVEFPNLEELTLDHNKDTEIWPEQFPVDSFPRL 1211
Query: 282 RFLE----------------------LSRLHKV--------QHLWKENAESNKVFANLKS 311
R L+ L RL ++ HLWKEN++ +LKS
Sbjct: 1212 RVLDDVIQFKEVFQLEGLDNENQAKRLGRLREIWLCDLPELTHLWKENSKPGLDLLSLKS 1271
Query: 312 PEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMME 371
E+ C +L LVP+S +NLATL V C L +L++ S ++SLV L+ +KI MME
Sbjct: 1272 LEVRNCVRLINLVPSSASFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGGSHMME 1331
Query: 372 EIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFS 406
E++ ++ GE A++ I F KL+++ L CL +LTSFS
Sbjct: 1332 EVVANEEGEAADE-IAFCKLQHMALKCLSNLTSFS 1365
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358344919|ref|XP_003636533.1| NBS/LRR resistance protein-like protein [Medicago truncatula] gi|355502468|gb|AES83671.1| NBS/LRR resistance protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 113/194 (58%), Gaps = 5/194 (2%)
Query: 15 IAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQ 74
IAF L+ L L+ LP L F ++FP LE V V CP MK FS+G STP L KV+
Sbjct: 1385 IAFISLQILNLECLPSLIKFSSSKCFMKFPLLEEVIVRECPQMKIFSEGNTSTPILQKVK 1444
Query: 75 VIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNN 134
+ E + +GNLN+TI ++ + F + YL LS +P LK++W+GQ L + F +
Sbjct: 1445 --IAENNSEWLWKGNLNNTIYNMFENKVAFGKLKYLALSDYPELKDVWYGQ-LHCNVFCS 1501
Query: 135 LCKLVVDDCTNMSSAI-PVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFP 193
L LVV+ C +S + P N+++ L+ L LEV++CDSLE VF ++ + ++E I
Sbjct: 1502 LKHLVVERCDFLSHVLFPSNVMKVLHTLEELEVKDCDSLEAVFDVKGMKSQEILIKE-NT 1560
Query: 194 SLSWLRLIDLPKLK 207
L L L LPKLK
Sbjct: 1561 QLKRLTLSGLPKLK 1574
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083436|ref|XP_002307026.1| predicted protein [Populus trichocarpa] gi|222856475|gb|EEE94022.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 166/365 (45%), Gaps = 71/365 (19%)
Query: 102 IGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNL 161
+GF + L++S FP+LK+ WH Q LP +FF+NL L VD+ A+P LL+ +N+L
Sbjct: 326 VGFDGVKRLKVSDFPQLKKRWHCQ-LPFNFFSNLTSLTVDEYCYSLDALPSTLLQFMNDL 384
Query: 162 GWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFT-GNIIELP 220
L+VRNCD LE VF L+ L +E + P L L LI L L+ CN I+E
Sbjct: 385 LELQVRNCDLLEGVFDLKGLGPEEGRV--WLPCLYELNLIGLSSLRHICNTDPQGILEFR 442
Query: 221 MFWSLTIENCPDMETFISNST--SILHMTADNKEPQKL------KSEENLLVADQIQHLF 272
L + +C + + S S++H+ QK+ K EE + +
Sbjct: 443 NLNFLEVHDCSSLINIFTPSMALSLVHL-------QKIVIRNCDKMEEIITKERAGEEEA 495
Query: 273 DEKVTFPQLRFLELSRLHKVQHLWKENAESN---------------KVFAN--LKSPEIS 315
K+ FP L+ + L L ++ +++ + N K+F + ++ PE +
Sbjct: 496 MNKIIFPVLKVIILESLPELSNIYSGSGVLNLTSLEEICIDDCPNMKIFISSLVEEPEPN 555
Query: 316 ECSKLQKLVPASWHLENLATL-----------------------------------KVSK 340
K ++ N L ++
Sbjct: 556 SVGKGKEQRQGQGGNYNFTALLNYKVAFPELKKLRVDWNTIMEVTQRGQFRTEFFCRLKS 615
Query: 341 CHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400
C GL+NL T ST++SLV L ++ I CK M ++ Q G+EA+D I+F KLEYL L L
Sbjct: 616 CLGLLNLFTSSTAKSLVQLVKLTIAHCKKMTVVVARQGGDEADDEIIFSKLEYLELLDLQ 675
Query: 401 SLTSF 405
+LTSF
Sbjct: 676 NLTSF 680
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358344279|ref|XP_003636218.1| Rpp4 candidate [Medicago truncatula] gi|355502153|gb|AES83356.1| Rpp4 candidate [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 116/206 (56%), Gaps = 8/206 (3%)
Query: 7 GEEVKENRIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILS 66
G+E + N I F L+ L L L RL FC ++FP LE + V CP M+ FS G+ +
Sbjct: 437 GKEDEINDIVFCSLQTLELISLQRLCRFCSCPCPIKFPLLEVIVVKECPRMELFSLGVTN 496
Query: 67 TPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQA 126
T L VQ +EG H EG+LN TI+K + + + F YL LS +P LK++W+GQ
Sbjct: 497 TTNLQNVQT---DEGN--HWEGDLNRTIKKMFCDKVAFGKFKYLALSDYPELKDVWYGQ- 550
Query: 127 LPVSFFNNLCKLVVDDCTNMSSAI-PVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKE 185
L + F NL LVV+ C +S + P N+++ L L LEV++CDSLE VF ++ + ++E
Sbjct: 551 LHCNVFCNLKHLVVERCDFLSHVLFPSNVMQVLQTLEELEVKDCDSLEAVFDVKGMKSQE 610
Query: 186 EHIGPLFPSLSWLRLIDLPKLKRFCN 211
I L L L LPKLK N
Sbjct: 611 ILIKE-NTQLKRLTLSTLPKLKHIWN 635
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_scaffold_329000001 | cc-nbs-lrr resistance protein (2359 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 407 | |||
| PTZ00432 | 1119 | PTZ00432, PTZ00432, falcilysin; Provisional | 0.003 |
| >gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 236 FISNST-SILHMTADNKEPQKLKSEENLLVADQ----IQHLFDEKVTFPQLRFLELSRLH 290
++N+ +H+ A E K + E N LV D+ + HL E+V + + + +
Sbjct: 560 LLNNNHRVTVHLEAV--ESSKYEKEFNKLVKDELKERLSHLTKEQVDEMEKAYEKFKK-- 615
Query: 291 KVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA 326
+E + + + +S+ +K + +P
Sbjct: 616 -----EREADDDPEHLDSFPILSLSDLNKETEEIPT 646
|
Length = 1119 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 407 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.87 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.84 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.82 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.82 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.67 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.53 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.46 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.46 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.43 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.34 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.31 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.26 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.22 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.21 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.21 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.18 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.09 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.96 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.91 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.81 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.79 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.73 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.56 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.41 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.4 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.36 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.28 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.21 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.06 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.03 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.96 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 97.91 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.89 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.82 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 97.76 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.59 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.59 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.39 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.39 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.35 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.24 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.08 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.05 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 96.89 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 96.83 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.62 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.43 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.37 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.15 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 95.8 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 95.54 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.49 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 95.46 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 95.45 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 95.16 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.34 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.14 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 93.77 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.27 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 93.25 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 92.85 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 92.6 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 91.86 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 91.66 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 89.35 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 86.62 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 85.1 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 84.61 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 84.57 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 83.81 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 83.25 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=205.54 Aligned_cols=293 Identities=21% Similarity=0.268 Sum_probs=154.3
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceecc
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
++||.|.+.++ .++.+|..+ .+.+|++|++.+ +.+..+++....+++|++|+++++..++..+.
T Consensus 589 ~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~--------------s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ 652 (1153)
T PLN03210 589 PKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQG--------------SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD 652 (1153)
T ss_pred cccEEEEecCC-CCCCCCCcC-CccCCcEEECcC--------------ccccccccccccCCCCCEEECCCCCCcCcCCc
Confidence 45777777776 456666553 456777777743 23444555556667777777776665554331
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccc
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDL 203 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 203 (407)
. ..+++|+.|.+.+|..+..+|.. ++++++|+.|++++|+.++.++... .+++|+.|.+++|
T Consensus 653 -l----s~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~L~~Lp~~i-----------~l~sL~~L~Lsgc 714 (1153)
T PLN03210 653 -L----SMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCENLEILPTGI-----------NLKSLYRLNLSGC 714 (1153)
T ss_pred -c----ccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCCcCccCCcC-----------CCCCCCEEeCCCC
Confidence 1 23567777777777666655443 5667777777777776665544211 1356666666666
Q ss_pred ccccccccCCCccccCCCccEEeEecCCCCccccCcc----------------------------cccccCCCceeeccc
Q 047829 204 PKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNS----------------------------TSILHMTADNKEPQK 255 (407)
Q Consensus 204 ~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----------------------------~~~~l~~L~~L~l~~ 255 (407)
..+..++. ...+|+.|++.++. +..++... ....+++|+.|++++
T Consensus 715 ~~L~~~p~------~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 715 SRLKSFPD------ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred CCcccccc------ccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 55444321 12334444443321 22222110 001123444444444
Q ss_pred ccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCE
Q 047829 256 LKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLAT 335 (407)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~ 335 (407)
|+.+..++.. .+.+++|+.|++++|..++.+|... .+++|+.|++++|.++..+|.. .++|+.
T Consensus 788 n~~l~~lP~s---------i~~L~~L~~L~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~ 850 (1153)
T PLN03210 788 IPSLVELPSS---------IQNLHKLEHLEIENCINLETLPTGI-----NLESLESLDLSGCSRLRTFPDI---STNISD 850 (1153)
T ss_pred CCCccccChh---------hhCCCCCCEEECCCCCCcCeeCCCC-----CccccCEEECCCCCcccccccc---ccccCE
Confidence 4433322211 3445556666665555555555432 1455555556555555544421 234555
Q ss_pred EEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCCCccee
Q 047829 336 LKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSF 405 (407)
Q Consensus 336 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~l~~~ 405 (407)
|++++ +.++.++ .....+++|+.|++.+|.+++.++ .....+++|+.+++++|++|+.+
T Consensus 851 L~Ls~-n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~--------~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 851 LNLSR-TGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVS--------LNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred eECCC-CCCccCh--HHHhcCCCCCEEECCCCCCcCccC--------cccccccCCCeeecCCCcccccc
Confidence 55554 3444332 123456677777777776666654 33445666777777777766644
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=197.43 Aligned_cols=305 Identities=18% Similarity=0.207 Sum_probs=199.2
Q ss_pred ccccCCccEEeecCCC--c----cccccccccCCC-CcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEe
Q 047829 40 TLEFPSLERVSVTFCP--D----MKTFSQGILSTP-KLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQL 112 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~--~----l~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l 112 (407)
...+++|+.|.+.+.. . -..+|.++..+| +|+.|.+.+ ..++.+|..+ ...+|++|++
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~--------------~~l~~lP~~f-~~~~L~~L~L 618 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK--------------YPLRCMPSNF-RPENLVKLQM 618 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC--------------CCCCCCCCcC-CccCCcEEEC
Confidence 4478999999986542 1 124676666665 599999954 2233455444 4578999999
Q ss_pred ccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCC
Q 047829 113 SYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLF 192 (407)
Q Consensus 113 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (407)
.++. ++..|.+. ..+++|+.|+++++..++.++. +..+++|+.|++++|..+..++... . .+
T Consensus 619 ~~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si---------~-~L 680 (1153)
T PLN03210 619 QGSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSI---------Q-YL 680 (1153)
T ss_pred cCcc-cccccccc----ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhh---------h-cc
Confidence 9976 77777765 5689999999999888776653 6788999999999998877665311 1 35
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccc---c-
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQ---I- 268 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~- 268 (407)
++|+.|++.+|..+..++... .+++|+.|++.+|..+..++.. .++|+.|+++++. ++.++.... +
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~-i~~lP~~~~l~~L~ 750 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETA-IEEFPSNLRLENLD 750 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC----CCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCc-cccccccccccccc
Confidence 899999999999998876533 5789999999999887766431 5678888887665 332221100 0
Q ss_pred ------------ccccc-----cccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccccccc
Q 047829 269 ------------QHLFD-----EKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLE 331 (407)
Q Consensus 269 ------------~~~~~-----~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 331 (407)
..... ....+++|+.|++++++.+..+|.. +..+++|+.|++.+|.+++.+|... .++
T Consensus 751 ~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~ 825 (1153)
T PLN03210 751 ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIENCINLETLPTGI-NLE 825 (1153)
T ss_pred cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCCCCCcCeeCCCC-Ccc
Confidence 00000 0011345566666655555555543 2235566666666666666555443 455
Q ss_pred ccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCCCcceec
Q 047829 332 NLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSLTSFS 406 (407)
Q Consensus 332 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~l~~~~ 406 (407)
+|++|++++|..+..++. ..++|+.|++.++ .++.++ ..+..+++|++|++++|++|+.+.
T Consensus 826 sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP--------~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVP--------WWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred ccCEEECCCCCccccccc-----cccccCEeECCCC-CCccCh--------HHHhcCCCCCEEECCCCCCcCccC
Confidence 666666666655554421 1245556665554 344443 456789999999999999998753
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.8e-20 Score=195.14 Aligned_cols=85 Identities=12% Similarity=0.002 Sum_probs=43.2
Q ss_pred cCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccce
Q 047829 306 FANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDC 385 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~ 385 (407)
+++|+.+++.+++....+|..+..+++|++|++++|+ +....+. ....++.|+.+++++|. +.. ..+...
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p~-~~~~l~~L~~L~Ls~N~-l~~-------~~~~~~ 448 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELPS-EFTKLPLVYFLDISNNN-LQG-------RINSRK 448 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECCh-hHhcCCCCCEEECcCCc-ccC-------ccChhh
Confidence 3444555555444333444444555566666665543 2222121 23345666666666552 221 122334
Q ss_pred eEecccceEecCCCC
Q 047829 386 IVFRKLEYLGLDCLP 400 (407)
Q Consensus 386 ~~~~~L~~L~l~~cp 400 (407)
..+++|+.|++++|.
T Consensus 449 ~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 449 WDMPSLQMLSLARNK 463 (968)
T ss_pred ccCCCCcEEECcCce
Confidence 467788888888774
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=193.80 Aligned_cols=342 Identities=14% Similarity=0.015 Sum_probs=161.5
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.+++|++|+++++.-....|. ..+++|++|++++|.....+|..++.+++|++|++.++.- ..
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~----~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-------------~~ 178 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR----GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-------------VG 178 (968)
T ss_pred cCCCCCEEECcCCccccccCc----cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-------------cc
Confidence 467888888887542222222 2467777777777744446676777777777777754110 11
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.+|..+..+++|++|+++++.-....+... ..+++|+.|.+.+|.....++. .++++++|++|++++|.....+
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPREL----GQMKSLKWIYLGYNNLSGEIPY--EIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHH----cCcCCccEEECcCCccCCcCCh--hHhcCCCCCEEECcCceecccc
Confidence 233344445555555555554221111111 2244555555554443332222 1444455555555444321111
Q ss_pred ecc-CCcc----------ccccccC---CCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCccc
Q 047829 176 FHL-EELS----------AKEEHIG---PLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNST 241 (407)
Q Consensus 176 ~~~-~~~~----------~~~~~~~---~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 241 (407)
+.. .... .+.+..+ ..+++|+.|+++++.....++. .+..+++|+.|++.++. +.+..+..
T Consensus 253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~l~~n~-~~~~~~~~- 327 (968)
T PLN00113 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE---LVIQLQNLEILHLFSNN-FTGKIPVA- 327 (968)
T ss_pred ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh---hHcCCCCCcEEECCCCc-cCCcCChh-
Confidence 100 0000 0000000 0123444444444321111111 12233444444444432 22222211
Q ss_pred ccccCCCceeecccccccchhhhc----c----------ccccc-cccccccCCcceEeccccccccccccccccccccc
Q 047829 242 SILHMTADNKEPQKLKSEENLLVA----D----------QIQHL-FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVF 306 (407)
Q Consensus 242 ~~~l~~L~~L~l~~~~~l~~~~~~----~----------~~~~~-~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 306 (407)
...+++|+.|++++|.....++.. . .+... ......+++|+.|+++++.-...++.. +..+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~----~~~~ 403 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS----LGAC 403 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH----HhCC
Confidence 122444555554444322111110 0 00000 001222345555555553222222222 2347
Q ss_pred CCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCccccee
Q 047829 307 ANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCI 386 (407)
Q Consensus 307 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~ 386 (407)
++|+.|++.+|.....+|..+..++.|+.++++++ .+....+. ....+++|+.|++.+|.....++ .. .
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p--------~~-~ 472 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGRINS-RKWDMPSLQMLSLARNKFFGGLP--------DS-F 472 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC-cccCccCh-hhccCCCCcEEECcCceeeeecC--------cc-c
Confidence 88999999988766677777888999999999885 44444332 23467899999999985433332 21 2
Q ss_pred EecccceEecCCCC
Q 047829 387 VFRKLEYLGLDCLP 400 (407)
Q Consensus 387 ~~~~L~~L~l~~cp 400 (407)
..++|+.|++++|.
T Consensus 473 ~~~~L~~L~ls~n~ 486 (968)
T PLN00113 473 GSKRLENLDLSRNQ 486 (968)
T ss_pred ccccceEEECcCCc
Confidence 34688888887764
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-17 Score=155.77 Aligned_cols=335 Identities=18% Similarity=0.170 Sum_probs=190.7
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeeccc----cccc---ccCcc
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEG----ELYH---REGNL 90 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~----~~~~---~~~~~ 90 (407)
+.-++|++++ .++..+.... ...+++|+.+++.++ .++.+|.......+|+.|.+.....- ..+. .+.-+
T Consensus 78 ~~t~~Ldlsn-Nkl~~id~~~-f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSN-NKLSHIDFEF-FYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccc-cccccCcHHH-HhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 3456688887 4566554443 457899999999988 88899988777788999998651110 0000 00000
Q ss_pred h---hhHHHHHHh-hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEE
Q 047829 91 N---STIQKCYKE-MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEV 166 (407)
Q Consensus 91 ~---~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 166 (407)
+ +.|..++.. +-.-.+|++|+++++. +.....+. | ..+.+|..|.+..++..+ + |...++++++|+.|++
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~-F--~~lnsL~tlkLsrNritt-L-p~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGH-F--DSLNSLLTLKLSRNRITT-L-PQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeecccc-cccccccc-c--cccchheeeecccCcccc-c-CHHHhhhcchhhhhhc
Confidence 0 011111111 1122457777777665 33332232 3 346788888888876653 3 4455778899999988
Q ss_pred ccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccC
Q 047829 167 RNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHM 246 (407)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 246 (407)
..+. +..+.. .. + ..+++|+.|.+... ++..+. .+.+-.+.++++|++.. +++..+...++ .+++
T Consensus 229 nrN~-irive~---lt-F-----qgL~Sl~nlklqrN-~I~kL~--DG~Fy~l~kme~l~L~~-N~l~~vn~g~l-fgLt 293 (873)
T KOG4194|consen 229 NRNR-IRIVEG---LT-F-----QGLPSLQNLKLQRN-DISKLD--DGAFYGLEKMEHLNLET-NRLQAVNEGWL-FGLT 293 (873)
T ss_pred cccc-eeeehh---hh-h-----cCchhhhhhhhhhc-Cccccc--Ccceeeecccceeeccc-chhhhhhcccc-cccc
Confidence 7753 332211 11 1 13578888877653 222222 22355678888888865 56776655543 3488
Q ss_pred CCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-
Q 047829 247 TADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP- 325 (407)
Q Consensus 247 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~- 325 (407)
+|+.|+++.+.. ..+- ...+...++|+.|+|++ +.++.++++++.. ++.|+.|.++.++ +..+.+
T Consensus 294 ~L~~L~lS~NaI-~rih--------~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~---L~~Le~LnLs~Ns-i~~l~e~ 359 (873)
T KOG4194|consen 294 SLEQLDLSYNAI-QRIH--------IDSWSFTQKLKELDLSS-NRITRLDEGSFRV---LSQLEELNLSHNS-IDHLAEG 359 (873)
T ss_pred hhhhhccchhhh-heee--------cchhhhcccceeEeccc-cccccCChhHHHH---HHHhhhhcccccc-hHHHHhh
Confidence 888888876532 1111 12255677888888888 6778887776654 6677777776543 333332
Q ss_pred ccccccccCEEEeccCcCcccccC--chhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 326 ASWHLENLATLKVSKCHGLINLLT--LSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 326 ~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
.+..+.+|++|++.+ +.+..... ......+++|+.|.+.++ +++.++ ...+..++.|++|++.+.
T Consensus 360 af~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~-------krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP-------KRAFSGLEALEHLDLGDN 426 (873)
T ss_pred HHHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCc-eeeecc-------hhhhccCcccceecCCCC
Confidence 234456666666665 33322211 112234666666666665 555554 123445566666665543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-17 Score=153.60 Aligned_cols=156 Identities=14% Similarity=0.109 Sum_probs=95.3
Q ss_pred cCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccc
Q 047829 218 ELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWK 297 (407)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~ 297 (407)
++.+|..++++ |+++..+|... -.+++|+.|.++++...+--. ..+.-.+|++|+++. ++++.+|.
T Consensus 220 ~l~NL~dvDlS-~N~Lp~vPecl--y~l~~LrrLNLS~N~iteL~~----------~~~~W~~lEtLNlSr-NQLt~LP~ 285 (1255)
T KOG0444|consen 220 DLHNLRDVDLS-ENNLPIVPECL--YKLRNLRRLNLSGNKITELNM----------TEGEWENLETLNLSR-NQLTVLPD 285 (1255)
T ss_pred hhhhhhhcccc-ccCCCcchHHH--hhhhhhheeccCcCceeeeec----------cHHHHhhhhhhcccc-chhccchH
Confidence 45566666664 35555554332 125667777776654221100 011234667777776 56666665
Q ss_pred cccccccccCCcCceeeccCcc-ccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhcc
Q 047829 298 ENAESNKVFANLKSPEISECSK-LQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQS 376 (407)
Q Consensus 298 ~~~~~~~~~~~L~~L~l~~c~~-l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 376 (407)
. ++. +++|++|.+.++.. ...+|.+++.+.+|+.++..+ +.++- +|++ ...++.|+.|.+..+ .+-.++
T Consensus 286 a-vcK---L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LEl-VPEg-lcRC~kL~kL~L~~N-rLiTLP-- 355 (1255)
T KOG0444|consen 286 A-VCK---LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLEL-VPEG-LCRCVKLQKLKLDHN-RLITLP-- 355 (1255)
T ss_pred H-Hhh---hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-ccccc-Cchh-hhhhHHHHHhccccc-ceeech--
Confidence 4 222 66777777665432 336777888888888888776 44543 3443 456778888877544 555555
Q ss_pred ccCCcccceeEecccceEecCCCCCcc
Q 047829 377 QVGEEAEDCIVFRKLEYLGLDCLPSLT 403 (407)
Q Consensus 377 ~~g~~~~~~~~~~~L~~L~l~~cp~l~ 403 (407)
+.+.-++.|+.||+...|+|.
T Consensus 356 ------eaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 356 ------EAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ------hhhhhcCCcceeeccCCcCcc
Confidence 778889999999999998874
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-15 Score=143.00 Aligned_cols=292 Identities=14% Similarity=0.095 Sum_probs=188.5
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecc----------ccccc
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEE----------GELYH 85 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~----------~~~~~ 85 (407)
.+++||.+.+.+ .++++...-.....+..|..||++++ +++++|.++.+..++-.|+++.... ...+.
T Consensus 76 ~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhc-cccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 466666666665 45665555554567777777777777 7777777777777777777754211 01111
Q ss_pred ccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCC-CcCCccchhhccccCCee
Q 047829 86 REGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNM-SSAIPVNLLRCLNNLGWL 164 (407)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~l~~L~~L 164 (407)
++.-.++.+..+|..+..+..|++|+++++| +.+..... +|. +.+|+.|++++.... .++|.+ +..+.+|+.+
T Consensus 154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQ-LPs--mtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dv 227 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQ-LPS--MTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDV 227 (1255)
T ss_pred hhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhc-Ccc--chhhhhhhcccccchhhcCCCc--hhhhhhhhhc
Confidence 2222334566777777778889999999888 55544444 433 667777888875554 344444 7788899999
Q ss_pred EEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccc
Q 047829 165 EVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSIL 244 (407)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 244 (407)
+++.+ ++..++...+ .+++|+.|++++. +++++....+ --.+|++|+++. +.++.+|. . .-.
T Consensus 228 DlS~N-~Lp~vPecly----------~l~~LrrLNLS~N-~iteL~~~~~---~W~~lEtLNlSr-NQLt~LP~-a-vcK 289 (1255)
T KOG0444|consen 228 DLSEN-NLPIVPECLY----------KLRNLRRLNLSGN-KITELNMTEG---EWENLETLNLSR-NQLTVLPD-A-VCK 289 (1255)
T ss_pred ccccc-CCCcchHHHh----------hhhhhheeccCcC-ceeeeeccHH---HHhhhhhhcccc-chhccchH-H-Hhh
Confidence 99864 5555543221 2478899998875 3444322222 234688888877 56766653 2 223
Q ss_pred cCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccc
Q 047829 245 HMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLV 324 (407)
Q Consensus 245 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 324 (407)
++.|+.|++.++..-.+=+++ -++.+..|+.+..++ +.+.-+|++ + -.++.|++|.++. +.+..+|
T Consensus 290 L~kL~kLy~n~NkL~FeGiPS--------GIGKL~~Levf~aan-N~LElVPEg-l---cRC~kL~kL~L~~-NrLiTLP 355 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPS--------GIGKLIQLEVFHAAN-NKLELVPEG-L---CRCVKLQKLKLDH-NRLITLP 355 (1255)
T ss_pred hHHHHHHHhccCcccccCCcc--------chhhhhhhHHHHhhc-cccccCchh-h---hhhHHHHHhcccc-cceeech
Confidence 788888888666543322222 155677777777776 566666654 3 3488899998874 5577788
Q ss_pred cccccccccCEEEeccCcCcccc
Q 047829 325 PASWHLENLATLKVSKCHGLINL 347 (407)
Q Consensus 325 ~~~~~~~~L~~L~l~~c~~l~~~ 347 (407)
+.++.++-|+.|++...+++--.
T Consensus 356 eaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhhhhcCCcceeeccCCcCccCC
Confidence 88888999999999887776544
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.4e-14 Score=132.98 Aligned_cols=308 Identities=14% Similarity=0.088 Sum_probs=144.2
Q ss_pred cCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 43 FPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
.+.-+.|+++++ ++..+- ..+.++++|+++++.. +.+..+|.......+|++|++.++.--+..
T Consensus 77 p~~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~--------------N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~ 141 (873)
T KOG4194|consen 77 PSQTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNK--------------NELTRIPRFGHESGHLEKLDLRHNLISSVT 141 (873)
T ss_pred ccceeeeecccc-ccccCcHHHHhcCCcceeeeecc--------------chhhhcccccccccceeEEeeecccccccc
Confidence 356678999998 665443 3567899999999953 455666665556666777777765511111
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLI 201 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (407)
.... ..++.|+.|+++.+.... ++ ...++.-.++++|+++++. ++.+.. +.+. .|.+|-.|.++
T Consensus 142 se~L----~~l~alrslDLSrN~is~-i~-~~sfp~~~ni~~L~La~N~-It~l~~--------~~F~-~lnsL~tlkLs 205 (873)
T KOG4194|consen 142 SEEL----SALPALRSLDLSRNLISE-IP-KPSFPAKVNIKKLNLASNR-ITTLET--------GHFD-SLNSLLTLKLS 205 (873)
T ss_pred HHHH----HhHhhhhhhhhhhchhhc-cc-CCCCCCCCCceEEeecccc-cccccc--------cccc-ccchheeeecc
Confidence 1111 335566666666544332 11 1113333456666666542 332211 0000 13444444444
Q ss_pred ccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccc--cch--hhh----------ccc
Q 047829 202 DLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKS--EEN--LLV----------ADQ 267 (407)
Q Consensus 202 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~--l~~--~~~----------~~~ 267 (407)
+. .++.++.. .+..+++|+.|++.+ +++..+-. .-++++++|+.|.+..+.. +.+ |.. .+.
T Consensus 206 rN-rittLp~r--~Fk~L~~L~~LdLnr-N~irive~-ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 206 RN-RITTLPQR--SFKRLPKLESLDLNR-NRIRIVEG-LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred cC-cccccCHH--Hhhhcchhhhhhccc-cceeeehh-hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 32 22222211 123344555555543 22222111 1123344444444433221 000 000 000
Q ss_pred cccc-cccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcc
Q 047829 268 IQHL-FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLI 345 (407)
Q Consensus 268 ~~~~-~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~ 345 (407)
+.+- ..-..++.+|+.|++++ +.+.++...+- ...++|+.|+++.+ .++.+++ .+..+.+|++|++++ +.+.
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~W---sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~ 354 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSW---SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSID 354 (873)
T ss_pred hhhhhcccccccchhhhhccch-hhhheeecchh---hhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchH
Confidence 0000 01133455666666666 34444433321 12566777776653 3454543 234456677777766 5555
Q ss_pred cccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCC
Q 047829 346 NLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDC 398 (407)
Q Consensus 346 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~ 398 (407)
.+ .++.+..+.+|+.|++..+. +.-.++ +++ .....++.|+.|++.+
T Consensus 355 ~l-~e~af~~lssL~~LdLr~N~-ls~~IE--Daa--~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 355 HL-AEGAFVGLSSLHKLDLRSNE-LSWCIE--DAA--VAFNGLPSLRKLRLTG 401 (873)
T ss_pred HH-HhhHHHHhhhhhhhcCcCCe-EEEEEe--cch--hhhccchhhhheeecC
Confidence 55 33444556677777766552 111111 111 2233477777777654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.6e-16 Score=138.28 Aligned_cols=221 Identities=18% Similarity=0.097 Sum_probs=120.1
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeec---------ccccccc
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKE---------EGELYHR 86 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~---------~~~~~~~ 86 (407)
-++.|.+|++.+ .++.++|.. ++.+.+++.+++++. ++..+|..++.+++|..++....+ ++..+..
T Consensus 66 nL~~l~vl~~~~-n~l~~lp~a--ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 66 NLACLTVLNVHD-NKLSQLPAA--IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred cccceeEEEecc-chhhhCCHH--HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 467788888887 466777766 567778888888877 777788888888888777775411 1122222
Q ss_pred cCcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEE
Q 047829 87 EGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEV 166 (407)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l 166 (407)
....++.+..+|++++.+.++..+++.++. ++..+... -.++.|+.++...+ .++.+|+. ++.+.+|..|.+
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~----i~m~~L~~ld~~~N-~L~tlP~~--lg~l~~L~~LyL 213 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENH----IAMKRLKHLDCNSN-LLETLPPE--LGGLESLELLYL 213 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHH----HHHHHHHhcccchh-hhhcCChh--hcchhhhHHHHh
Confidence 223334555666666666666666666554 22221111 12344444443332 12333333 444555555555
Q ss_pred ccccccceeeccCCcccccc-------------ccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCC
Q 047829 167 RNCDSLEEVFHLEELSAKEE-------------HIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDM 233 (407)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l 233 (407)
..+ ++..++.+.+++.... ...+.++++..|++.+. +++++++.. .-+.+|++|++++ +.+
T Consensus 214 ~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~---clLrsL~rLDlSN-N~i 287 (565)
T KOG0472|consen 214 RRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEI---CLLRSLERLDLSN-NDI 287 (565)
T ss_pred hhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHH---HHhhhhhhhcccC-Ccc
Confidence 443 3444444443333111 11123567777777764 566665543 2456678888876 456
Q ss_pred ccccCcccccccCCCceeeccccc
Q 047829 234 ETFISNSTSILHMTADNKEPQKLK 257 (407)
Q Consensus 234 ~~~~~~~~~~~l~~L~~L~l~~~~ 257 (407)
++.++. ...+ .|+.|.+.|++
T Consensus 288 s~Lp~s--Lgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 288 SSLPYS--LGNL-HLKFLALEGNP 308 (565)
T ss_pred ccCCcc--cccc-eeeehhhcCCc
Confidence 665542 1223 56666666654
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-14 Score=128.77 Aligned_cols=317 Identities=15% Similarity=0.117 Sum_probs=206.4
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCcccc--ccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKT--FSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
..|+.|.+.+|.....-+.......+|++++|.+.+|..+++ +-.-...+++|++|++.. |..| .+..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~---c~~i-----T~~~-- 207 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS---CSSI-----TDVS-- 207 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc---cchh-----HHHH--
Confidence 457888999998777666665566889999999999987763 222235588999999953 1111 1112
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
+-....++++|++|+++||+.++...... +. ..+.+++.+...+|.....-.....-...+-+..+++..|+.+++.
T Consensus 208 -Lk~la~gC~kL~~lNlSwc~qi~~~gv~~-~~-rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 208 -LKYLAEGCRKLKYLNLSWCPQISGNGVQA-LQ-RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred -HHHHHHhhhhHHHhhhccCchhhcCcchH-Hh-ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 22345678999999999999777632222 11 3356677777778876643222222233444666666678766664
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
.... +......|+.+...+|..+.+..... -..+.++|+.+.+..|.+++...-..+.+.++.|+.+.+.+
T Consensus 285 ~~~~--------i~~~c~~lq~l~~s~~t~~~d~~l~a-Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 285 DLWL--------IACGCHALQVLCYSSCTDITDEVLWA-LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred HHHH--------HhhhhhHhhhhcccCCCCCchHHHHH-HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 3111 11123678888888887765432221 12357899999999999988887777788899999999998
Q ss_pred ccccchhhhccccccccccccccCCcceEeccccccccccccccccc-ccccCCcCceeeccCcccccc-cccccccccc
Q 047829 256 LKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAES-NKVFANLKSPEISECSKLQKL-VPASWHLENL 333 (407)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~-~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L 333 (407)
|....+- .......+++.|+.+.++.|..++.-....+.. --.+..|+.+.+++|+.+.+- -..+..+++|
T Consensus 356 ~~~~~d~-------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 356 CGLITDG-------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred cceehhh-------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 8876542 011224568899999999876665431111100 012567888899999887632 2335668899
Q ss_pred CEEEeccCcCcccccCchhhhccccCCEEE
Q 047829 334 ATLKVSKCHGLINLLTLSTSESLVNLERMK 363 (407)
Q Consensus 334 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 363 (407)
+++++..|..+...+...+...+|+++...
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 999999998876665555566667766543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-12 Score=134.84 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=99.1
Q ss_pred ecccceeeeCcccc-cccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 17 FSELKFLILDYLPR-LTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 17 l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.++|++|-+.+... +...+.. ....+|.|++||+++|..+.++|.+|+.+.+||+|++.+ +.+.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~-ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~--------------t~I~ 608 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGE-FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD--------------TGIS 608 (889)
T ss_pred CCccceEEEeecchhhhhcCHH-HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC--------------CCcc
Confidence 34688887777432 3333222 245789999999999999999999999999999999965 5677
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
++|..+..++.|.+|++.....+...+... ..+.+|+.|.+..-....+....+.+.++.+|+.+.+...+
T Consensus 609 ~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~----~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 609 HLPSGLGNLKKLIYLNLEVTGRLESIPGIL----LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccchHHHHHHhhheeccccccccccccchh----hhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 788888888999999999888766553222 44899999999875422222233446777777877775543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-14 Score=127.14 Aligned_cols=297 Identities=14% Similarity=0.084 Sum_probs=191.9
Q ss_pred CCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCC
Q 047829 68 PKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMS 147 (407)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 147 (407)
-.|+.|.++|+... ....+-.....++++++|.+.+|..+.+..... +. ..+++|+.+.+..|..++
T Consensus 138 g~lk~LSlrG~r~v-----------~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-la-~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 138 GFLKELSLRGCRAV-----------GDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-LA-RYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred cccccccccccccC-----------CcchhhHHhhhCCchhhhhhhcceeccHHHHHH-HH-HhcchhhhhhhcccchhH
Confidence 35777777663321 111233345677889999999988776543322 22 457899999999998888
Q ss_pred cCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeE
Q 047829 148 SAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTI 227 (407)
Q Consensus 148 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l 227 (407)
+.........+++|++|++++|+.+..-+. ..... ....++.+...+|..+..=. ....-...+-+..+++
T Consensus 205 ~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv-------~~~~r-G~~~l~~~~~kGC~e~~le~-l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 205 DVSLKYLAEGCRKLKYLNLSWCPQISGNGV-------QALQR-GCKELEKLSLKGCLELELEA-LLKAAAYCLEILKLNL 275 (483)
T ss_pred HHHHHHHHHhhhhHHHhhhccCchhhcCcc-------hHHhc-cchhhhhhhhcccccccHHH-HHHHhccChHhhccch
Confidence 766555677899999999999987665110 00011 12345555555555432100 0000113445666667
Q ss_pred ecCCCCccccCcccccccCCCceeecccccccchhhhcccccccccccc-ccCCcceEeccccccccccccccccccccc
Q 047829 228 ENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKV-TFPQLRFLELSRLHKVQHLWKENAESNKVF 306 (407)
Q Consensus 228 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 306 (407)
..|..++....+.+...+..|+.+..++|..+.+.+-. +++ ..++|+.+.++.|..++......+.. ++
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~--------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r--n~ 345 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW--------ALGQHCHNLQVLELSGCQQFSDRGFTMLGR--NC 345 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH--------HHhcCCCceEEEeccccchhhhhhhhhhhc--CC
Confidence 78877777765566667888888888888887654321 122 36889999999888877666555432 47
Q ss_pred CCcCceeeccCcccccc--ccccccccccCEEEeccCcCcccccCch---hhhccccCCEEEEecccchhhhhccccCCc
Q 047829 307 ANLKSPEISECSKLQKL--VPASWHLENLATLKVSKCHGLINLLTLS---TSESLVNLERMKITDCKMMEEIIQSQVGEE 381 (407)
Q Consensus 307 ~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~~~~~~---~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~ 381 (407)
+.|+.+++.+|..+.+- -.....++.|+.+.+++|..+.+..... .......|+.+.+.+|+.+.+..
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~------- 418 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT------- 418 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-------
Confidence 78999999888765532 2224568899999999998877762211 22345678888889998766653
Q ss_pred ccceeEecccceEecCCCCCcc
Q 047829 382 AEDCIVFRKLEYLGLDCLPSLT 403 (407)
Q Consensus 382 ~~~~~~~~~L~~L~l~~cp~l~ 403 (407)
.+.+..+++|+.+++.+|.+++
T Consensus 419 Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 419 LEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred HHHHhhCcccceeeeechhhhh
Confidence 2455678888888888876654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-12 Score=126.91 Aligned_cols=117 Identities=22% Similarity=0.291 Sum_probs=87.5
Q ss_pred ccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCccccc
Q 047829 269 QHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLL 348 (407)
Q Consensus 269 ~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~ 348 (407)
++.++.+.++++|+.|+|++ +.+..+|...+.. +..|+.|+++++ +++.+|..+..++.|++|...+ +.+...|
T Consensus 373 d~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~k---le~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP 446 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRK---LEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP 446 (1081)
T ss_pred ccchhhhccccceeeeeecc-cccccCCHHHHhc---hHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech
Confidence 35566778889999999999 6788888776654 888999999985 6888998888899999998866 5666653
Q ss_pred CchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCCCc
Q 047829 349 TLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSL 402 (407)
Q Consensus 349 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~l 402 (407)
. ...++.|+.++++.+ .+..+.. +....+ |+|++||+++.+++
T Consensus 447 --e-~~~l~qL~~lDlS~N-~L~~~~l------~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 447 --E-LAQLPQLKVLDLSCN-NLSEVTL------PEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred --h-hhhcCcceEEecccc-hhhhhhh------hhhCCC-cccceeeccCCccc
Confidence 2 346889999998654 6666531 112212 79999999988753
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.1e-13 Score=119.73 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=98.7
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecc--------cccccccC
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEE--------GELYHREG 88 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~--------~~~~~~~~ 88 (407)
+.+|..|.+.+ .+++.++.... .++.|++||...+ -++.+|..++.+.+|+-|++...+- |..+...-
T Consensus 159 ~~~l~~l~~~~-n~l~~l~~~~i--~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh 234 (565)
T KOG0472|consen 159 LSKLSKLDLEG-NKLKALPENHI--AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELH 234 (565)
T ss_pred HHHHHHhhccc-cchhhCCHHHH--HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHH
Confidence 45677777777 46777776643 3788888888877 7788888888888888888864221 11111111
Q ss_pred cchhhHHHHHHhhc-CCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEc
Q 047829 89 NLNSTIQKCYKEMI-GFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVR 167 (407)
Q Consensus 89 ~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 167 (407)
--.+.|+.+|+++. ++++|.+||+.++. ++..+... ..+++|.+|+++++... .+|.. ++++ +|+.|-+.
T Consensus 235 ~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~----clLrsL~rLDlSNN~is-~Lp~s--Lgnl-hL~~L~le 305 (565)
T KOG0472|consen 235 VGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEI----CLLRSLERLDLSNNDIS-SLPYS--LGNL-HLKFLALE 305 (565)
T ss_pred hcccHHHhhHHHHhcccccceeeeccccc-cccCchHH----HHhhhhhhhcccCCccc-cCCcc--cccc-eeeehhhc
Confidence 11246778888876 88899999999887 66655544 45788999999986654 45655 7888 88888887
Q ss_pred ccc
Q 047829 168 NCD 170 (407)
Q Consensus 168 ~~~ 170 (407)
|++
T Consensus 306 GNP 308 (565)
T KOG0472|consen 306 GNP 308 (565)
T ss_pred CCc
Confidence 764
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.4e-11 Score=119.05 Aligned_cols=254 Identities=16% Similarity=0.058 Sum_probs=154.5
Q ss_pred cceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHH
Q 047829 20 LKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYK 99 (407)
Q Consensus 20 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 99 (407)
-..|+++++ +++.+|... .++|+.|++.++ .++.+|. ..++|++|++.+ +.+..+|.
T Consensus 203 ~~~LdLs~~-~LtsLP~~l----~~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~--------------N~LtsLP~ 259 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCL----PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSG--------------NQLTSLPV 259 (788)
T ss_pred CcEEEcCCC-CCCcCCcch----hcCCCEEEccCC-cCCCCCC---CCCCCcEEEecC--------------CccCcccC
Confidence 345666664 566665542 257788888877 6777773 357788888854 12222332
Q ss_pred hhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccC
Q 047829 100 EMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLE 179 (407)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 179 (407)
..++|++|+++++. ++.++ ..+.+|+.|.+.+|.. +.++. ..++|+.|++++| .+..++.
T Consensus 260 ---lp~sL~~L~Ls~N~-L~~Lp-------~lp~~L~~L~Ls~N~L-t~LP~-----~p~~L~~LdLS~N-~L~~Lp~-- 319 (788)
T PRK15387 260 ---LPPGLLELSIFSNP-LTHLP-------ALPSGLCKLWIFGNQL-TSLPV-----LPPGLQELSVSDN-QLASLPA-- 319 (788)
T ss_pred ---cccccceeeccCCc-hhhhh-------hchhhcCEEECcCCcc-ccccc-----cccccceeECCCC-ccccCCC--
Confidence 13567788877765 33322 1235677888877643 33332 2367888888876 3443321
Q ss_pred CccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccccc
Q 047829 180 ELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSE 259 (407)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 259 (407)
...+|+.|.+.++ .+..++. .+.+|+.|++++ ++++.++.. ..+|+.|+++++. +
T Consensus 320 -----------lp~~L~~L~Ls~N-~L~~LP~------lp~~Lq~LdLS~-N~Ls~LP~l-----p~~L~~L~Ls~N~-L 374 (788)
T PRK15387 320 -----------LPSELCKLWAYNN-QLTSLPT------LPSGLQELSVSD-NQLASLPTL-----PSELYKLWAYNNR-L 374 (788)
T ss_pred -----------CcccccccccccC-ccccccc------cccccceEecCC-CccCCCCCC-----Ccccceehhhccc-c
Confidence 1246777777664 3443321 124788888876 466665431 4577777776543 2
Q ss_pred chhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEec
Q 047829 260 ENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVS 339 (407)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~ 339 (407)
..++ ...++|+.|++++ +.++.+|.. .++|+.|+++++. +..+|.. ..+|+.|+++
T Consensus 375 ~~LP------------~l~~~L~~LdLs~-N~Lt~LP~l-------~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls 430 (788)
T PRK15387 375 TSLP------------ALPSGLKELIVSG-NRLTSLPVL-------PSELKELMVSGNR-LTSLPML---PSGLLSLSVY 430 (788)
T ss_pred ccCc------------ccccccceEEecC-CcccCCCCc-------ccCCCEEEccCCc-CCCCCcc---hhhhhhhhhc
Confidence 2221 1135788899987 456666643 4678899998864 6667642 3578888888
Q ss_pred cCcCcccccCchhhhccccCCEEEEeccc
Q 047829 340 KCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 340 ~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+ +.++.++ .. ...+++|+.|++++++
T Consensus 431 ~-NqLt~LP-~s-l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 431 R-NQLTRLP-ES-LIHLSSETTVNLEGNP 456 (788)
T ss_pred c-CcccccC-hH-HhhccCCCeEECCCCC
Confidence 7 5677663 33 4567889999998874
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=115.28 Aligned_cols=238 Identities=18% Similarity=0.094 Sum_probs=163.6
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
++|+.|.+.+ .+++.+|.. .++|++|+++++ .++.+|. ..++|++|++.+ +.+..+
T Consensus 222 ~~L~~L~L~~-N~Lt~LP~l-----p~~Lk~LdLs~N-~LtsLP~---lp~sL~~L~Ls~--------------N~L~~L 277 (788)
T PRK15387 222 AHITTLVIPD-NNLTSLPAL-----PPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS--------------NPLTHL 277 (788)
T ss_pred cCCCEEEccC-CcCCCCCCC-----CCCCcEEEecCC-ccCcccC---cccccceeeccC--------------Cchhhh
Confidence 4689999988 467777643 489999999999 8888884 356899999954 334555
Q ss_pred HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeec
Q 047829 98 YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFH 177 (407)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (407)
|.. ..+|+.|+++++. ++.++. ..++|+.|++++|... .++.. ..+|+.|.+++|. +..++.
T Consensus 278 p~l---p~~L~~L~Ls~N~-Lt~LP~-------~p~~L~~LdLS~N~L~-~Lp~l-----p~~L~~L~Ls~N~-L~~LP~ 339 (788)
T PRK15387 278 PAL---PSGLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDNQLA-SLPAL-----PSELCKLWAYNNQ-LTSLPT 339 (788)
T ss_pred hhc---hhhcCEEECcCCc-cccccc-------cccccceeECCCCccc-cCCCC-----cccccccccccCc-cccccc
Confidence 542 2568899998875 444322 2478999999987543 34321 2357888888763 333331
Q ss_pred cCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccc
Q 047829 178 LEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLK 257 (407)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 257 (407)
..++|+.|+++++ +++.++. .+++|+.|++.+ +.+..++. ...+|+.|+++++.
T Consensus 340 -------------lp~~Lq~LdLS~N-~Ls~LP~------lp~~L~~L~Ls~-N~L~~LP~-----l~~~L~~LdLs~N~ 393 (788)
T PRK15387 340 -------------LPSGLQELSVSDN-QLASLPT------LPSELYKLWAYN-NRLTSLPA-----LPSGLKELIVSGNR 393 (788)
T ss_pred -------------cccccceEecCCC-ccCCCCC------CCcccceehhhc-cccccCcc-----cccccceEEecCCc
Confidence 1257999999874 5655432 245788888876 45666543 14679999998764
Q ss_pred ccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEE
Q 047829 258 SEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLK 337 (407)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~ 337 (407)
+..+. ...++|+.|+++++ .+..+|.. +.+|+.|+++++ +++.+|..+..+++|+.++
T Consensus 394 -Lt~LP------------~l~s~L~~LdLS~N-~LssIP~l-------~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 394 -LTSLP------------VLPSELKELMVSGN-RLTSLPML-------PSGLLSLSVYRN-QLTRLPESLIHLSSETTVN 451 (788)
T ss_pred -ccCCC------------CcccCCCEEEccCC-cCCCCCcc-------hhhhhhhhhccC-cccccChHHhhccCCCeEE
Confidence 32221 12358999999994 57777643 457888999875 4778998888999999999
Q ss_pred eccCcCccc
Q 047829 338 VSKCHGLIN 346 (407)
Q Consensus 338 l~~c~~l~~ 346 (407)
++++ .+..
T Consensus 452 Ls~N-~Ls~ 459 (788)
T PRK15387 452 LEGN-PLSE 459 (788)
T ss_pred CCCC-CCCc
Confidence 9984 4443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-11 Score=122.25 Aligned_cols=245 Identities=17% Similarity=0.106 Sum_probs=136.0
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceecc
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
.+|++++++.. .+..+|.-++.+++|+.++. ..+.+..+|..+...++|++|.+..+. ++.++.
T Consensus 241 ~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~--------------n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~ 304 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLPEWIGACANLEALNA--------------NHNRLVALPLRISRITSLVSLSAAYNE-LEYIPP 304 (1081)
T ss_pred ccceeeecchh-hhhcchHHHHhcccceEecc--------------cchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCC
Confidence 45555555555 55556655566666666666 335566777777777777777776665 554443
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhcccc-CCeeEEccccccceeeccCCccccccccCCCCCcccEEeccc
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNN-LGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLID 202 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (407)
.. ..++.|+.|+++.+..- .+|. ..+..... |+.++.+.+ .++..+..++. .++.|+.|++.+
T Consensus 305 ~l----e~~~sL~tLdL~~N~L~-~lp~-~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~---------~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 305 FL----EGLKSLRTLDLQSNNLP-SLPD-NFLAVLNASLNTLNVSSN-KLSTLPSYEEN---------NHAALQELYLAN 368 (1081)
T ss_pred cc----cccceeeeeeehhcccc-ccch-HHHhhhhHHHHHHhhhhc-cccccccccch---------hhHHHHHHHHhc
Confidence 33 34677888888775443 2232 22222222 444554432 33333322211 246677777766
Q ss_pred cccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcc
Q 047829 203 LPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLR 282 (407)
Q Consensus 203 ~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~ 282 (407)
..--+..|. .+..+++||.|++++ +++..++ ......++.|++|.++++.. ..+. ...+.+++|+
T Consensus 369 N~Ltd~c~p---~l~~~~hLKVLhLsy-NrL~~fp-as~~~kle~LeeL~LSGNkL-~~Lp---------~tva~~~~L~ 433 (1081)
T KOG0618|consen 369 NHLTDSCFP---VLVNFKHLKVLHLSY-NRLNSFP-ASKLRKLEELEELNLSGNKL-TTLP---------DTVANLGRLH 433 (1081)
T ss_pred Ccccccchh---hhccccceeeeeecc-cccccCC-HHHHhchHHhHHHhcccchh-hhhh---------HHHHhhhhhH
Confidence 532222222 345788999999987 5666664 44566688888999987653 2222 1245566666
Q ss_pred eEecccccccccccccccccccccCCcCceeeccCccccc--cccccccccccCEEEeccCcC
Q 047829 283 FLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQK--LVPASWHLENLATLKVSKCHG 343 (407)
Q Consensus 283 ~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~L~~L~l~~c~~ 343 (407)
.|...+ +.+..+|+. . .+++|+.+|++. ++++. +|..... |+|++|++++...
T Consensus 434 tL~ahs-N~l~~fPe~--~---~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 434 TLRAHS-NQLLSFPEL--A---QLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhcC-Cceeechhh--h---hcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence 666665 455566622 1 256666666663 34442 2221111 6777777766443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-09 Score=109.31 Aligned_cols=29 Identities=3% Similarity=0.208 Sum_probs=13.6
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEE
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQV 75 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 75 (407)
+.|+.|+++++ .++.+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~L 227 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYA 227 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEEC
Confidence 34555555554 4444543322 34555554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-09 Score=107.65 Aligned_cols=247 Identities=12% Similarity=0.077 Sum_probs=152.7
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceecc
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
.+...|++.+. .++.+|..+. ++|+.|++.+ +.+..+|..+. ++|++|+++++. ++.++.
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~--------------N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~ 237 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDN--------------NELKSLPENLQ--GNIKTLYANSNQ-LTSIPA 237 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecC--------------CCCCcCChhhc--cCCCEEECCCCc-cccCCh
Confidence 45678888887 7778886553 4788888854 23334554443 579999998775 544332
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccc
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDL 203 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 203 (407)
....+|+.|.+++|... .+|.. +. ++|+.|++++| .+..++.. ..++|+.|+++++
T Consensus 238 ------~l~~~L~~L~Ls~N~L~-~LP~~--l~--s~L~~L~Ls~N-~L~~LP~~------------l~~sL~~L~Ls~N 293 (754)
T PRK15370 238 ------TLPDTIQEMELSINRIT-ELPER--LP--SALQSLDLFHN-KISCLPEN------------LPEELRYLSVYDN 293 (754)
T ss_pred ------hhhccccEEECcCCccC-cCChh--Hh--CCCCEEECcCC-ccCccccc------------cCCCCcEEECCCC
Confidence 22457889999887654 44332 22 47888988865 45444320 1257888888876
Q ss_pred ccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcce
Q 047829 204 PKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRF 283 (407)
Q Consensus 204 ~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~ 283 (407)
+++.++.. -+++|+.|++.++ .++.++... .++|+.|.+++|. ++.++. ...++|+.
T Consensus 294 -~Lt~LP~~-----lp~sL~~L~Ls~N-~Lt~LP~~l----~~sL~~L~Ls~N~-Lt~LP~-----------~l~~sL~~ 350 (754)
T PRK15370 294 -SIRTLPAH-----LPSGITHLNVQSN-SLTALPETL----PPGLKTLEAGENA-LTSLPA-----------SLPPELQV 350 (754)
T ss_pred -ccccCccc-----chhhHHHHHhcCC-ccccCCccc----cccceeccccCCc-cccCCh-----------hhcCcccE
Confidence 45554321 1246888888764 555554322 4678888887764 222211 11358888
Q ss_pred EecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccC--chhhhccccCCE
Q 047829 284 LELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLT--LSTSESLVNLER 361 (407)
Q Consensus 284 L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~ 361 (407)
|+++++ .+..+|.. + .++|+.|++++|. +..+|+.+. +.|+.|++++ +.+..++. ......++.+..
T Consensus 351 L~Ls~N-~L~~LP~~-l-----p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 351 LDVSKN-QITVLPET-L-----PPTITTLDVSRNA-LTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTR 419 (754)
T ss_pred EECCCC-CCCcCChh-h-----cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccE
Confidence 888884 56666643 1 3578888888864 566775432 4688888887 45655532 112233467778
Q ss_pred EEEeccc
Q 047829 362 MKITDCK 368 (407)
Q Consensus 362 L~i~~c~ 368 (407)
+.+.+++
T Consensus 420 L~L~~Np 426 (754)
T PRK15370 420 IIVEYNP 426 (754)
T ss_pred EEeeCCC
Confidence 8887765
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-09 Score=110.87 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=74.4
Q ss_pred ccCCccEEeecCCCc-ccccccc-ccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcc
Q 047829 42 EFPSLERVSVTFCPD-MKTFSQG-ILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLK 119 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~-l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 119 (407)
..++|+.|-+.+... +..++.. +..++.|++|++++ +.++..||..++.+-+|++|++++.. ++
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~-------------~~~l~~LP~~I~~Li~LryL~L~~t~-I~ 608 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSG-------------NSSLSKLPSSIGELVHLRYLDLSDTG-IS 608 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCC-------------CCccCcCChHHhhhhhhhcccccCCC-cc
Confidence 456788888887753 5555543 45588888888853 33455677777777888888888876 66
Q ss_pred eeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcc
Q 047829 120 EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRN 168 (407)
Q Consensus 120 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 168 (407)
+.|.+. ..++.|.+|++..+.....+ .+....+++||+|.+..
T Consensus 609 ~LP~~l----~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 609 HLPSGL----GNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPR 651 (889)
T ss_pred ccchHH----HHHHhhheeccccccccccc--cchhhhcccccEEEeec
Confidence 655555 56778888888877666543 34466688888888865
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-09 Score=101.46 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=67.5
Q ss_pred ccccCCccEEeecCCCc----cccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccC
Q 047829 40 TLEFPSLERVSVTFCPD----MKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYF 115 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~~----l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 115 (407)
...+..|++|++++|.- ...++..+...++++++.+.+ ...+..+..+..++..+..+++|++|+++++
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~-------~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 91 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL-------NETGRIPRGLQSLLQGLTKGCGLQELDLSDN 91 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccc-------cccCCcchHHHHHHHHHHhcCceeEEEccCC
Confidence 34567799999999842 134666667778888888854 1111123344556666666788888888877
Q ss_pred CCcceeccCC-CCCccccCCceEEEEecCCCCCcCC--ccchhhcc-ccCCeeEEcccc
Q 047829 116 PRLKEIWHGQ-ALPVSFFNNLCKLVVDDCTNMSSAI--PVNLLRCL-NNLGWLEVRNCD 170 (407)
Q Consensus 116 ~~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~l-~~L~~L~l~~~~ 170 (407)
.--....... .+. .. ++|+.|++.+|....... ....+..+ ++|+.|++++|.
T Consensus 92 ~~~~~~~~~~~~l~-~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 92 ALGPDGCGVLESLL-RS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred CCChhHHHHHHHHh-cc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 6321111100 011 11 447777777765431100 01123344 666777777664
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-10 Score=91.90 Aligned_cols=157 Identities=22% Similarity=0.227 Sum_probs=99.2
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+.+.+.|.++. .++..+|.. ...+.+|++|++.++ +++++|.++.++++|+.|++.- +.+..
T Consensus 32 ~s~ITrLtLSH-NKl~~vppn--ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm--------------nrl~~ 93 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVVPPN--IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM--------------NRLNI 93 (264)
T ss_pred hhhhhhhhccc-CceeecCCc--HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch--------------hhhhc
Confidence 44556667776 456666665 457788888888887 8888888888888888888832 23445
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
+|..+++++-|+.|+++.+. +.+......| -.+..|+.|++.++..- -+|+. ++++++|+.|.+..++-++-.-
T Consensus 94 lprgfgs~p~levldltynn-l~e~~lpgnf--f~m~tlralyl~dndfe-~lp~d--vg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNN-LNENSLPGNF--FYMTTLRALYLGDNDFE-ILPPD--VGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred CccccCCCchhhhhhccccc-cccccCCcch--hHHHHHHHHHhcCCCcc-cCChh--hhhhcceeEEeeccCchhhCcH
Confidence 77888888888888888655 4332221111 12456777777776543 23333 6777788888777765443221
Q ss_pred ccCCccccccccCCCCCcccEEecccccccccc
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
.+ + .+..|++|.+.+. .++.+
T Consensus 168 ei----------g-~lt~lrelhiqgn-rl~vl 188 (264)
T KOG0617|consen 168 EI----------G-DLTRLRELHIQGN-RLTVL 188 (264)
T ss_pred HH----------H-HHHHHHHHhcccc-eeeec
Confidence 11 1 2467777777764 34443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.5e-08 Score=91.27 Aligned_cols=94 Identities=15% Similarity=-0.003 Sum_probs=47.4
Q ss_pred ccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcc--eeccC--CCCCccccCCceEEE
Q 047829 64 ILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLK--EIWHG--QALPVSFFNNLCKLV 139 (407)
Q Consensus 64 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~--~~~~~~~l~~L~~L~ 139 (407)
+..+.+|+++++.++ +-.+.....++..+...+++++|+++++.--. ..+.. ..+ ..+++|+.|.
T Consensus 19 ~~~l~~L~~l~l~~~---------~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~ 87 (319)
T cd00116 19 LPKLLCLQVLRLEGN---------TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL--TKGCGLQELD 87 (319)
T ss_pred HHHHhhccEEeecCC---------CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH--HhcCceeEEE
Confidence 344556888888541 11122344566666667778888877654210 11100 001 1245777777
Q ss_pred EecCCCCCcCCccchhhcccc---CCeeEEcccc
Q 047829 140 VDDCTNMSSAIPVNLLRCLNN---LGWLEVRNCD 170 (407)
Q Consensus 140 l~~~~~~~~~~~~~~~~~l~~---L~~L~l~~~~ 170 (407)
+.+|...... ...+..+.+ |++|++++|.
T Consensus 88 l~~~~~~~~~--~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 88 LSDNALGPDG--CGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred ccCCCCChhH--HHHHHHHhccCcccEEEeeCCc
Confidence 7766554221 112333333 7777776653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-08 Score=89.90 Aligned_cols=191 Identities=14% Similarity=0.103 Sum_probs=90.1
Q ss_pred ccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccc
Q 047829 131 FFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFC 210 (407)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 210 (407)
.+.+|++..++++.. ...+...-.+.+++++.|+++.+ -+..+... ..+...||+|+.|+++... +...+
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v-------~~i~eqLp~Le~LNls~Nr-l~~~~ 188 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRN-LFHNWFPV-------LKIAEQLPSLENLNLSSNR-LSNFI 188 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhh-hHHhHHHH-------HHHHHhcccchhccccccc-ccCCc
Confidence 455666666665432 22222133566667777776653 12211110 1112245667777666532 22212
Q ss_pred cCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccc
Q 047829 211 NFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLH 290 (407)
Q Consensus 211 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 290 (407)
... .-..+++|+.|.+++|. ++.-...+.+..+|+|+.|+++.+..+... ..+...+..|++|+|++.+
T Consensus 189 ~s~-~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~---------~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 189 SSN-TTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIK---------ATSTKILQTLQELDLSNNN 257 (505)
T ss_pred ccc-chhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccccccee---------cchhhhhhHHhhccccCCc
Confidence 211 12246677777777764 322222334445777777777666422110 1112334567777777633
Q ss_pred ccccccccccccccccCCcCceeeccCcccc-ccccc-----cccccccCEEEeccCcCccc
Q 047829 291 KVQHLWKENAESNKVFANLKSPEISECSKLQ-KLVPA-----SWHLENLATLKVSKCHGLIN 346 (407)
Q Consensus 291 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~-----~~~~~~L~~L~l~~c~~l~~ 346 (407)
+..++.. ....+++.|+.|.++.|.--. ..|+. ...+++|+.|++.. +.+.+
T Consensus 258 -li~~~~~--~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~ 315 (505)
T KOG3207|consen 258 -LIDFDQG--YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRD 315 (505)
T ss_pred -ccccccc--cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Ccccc
Confidence 2233211 112346666666666554211 12221 24467777777766 34433
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-08 Score=82.69 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=108.5
Q ss_pred ccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 42 EFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
.+.....|.++++ ++..+|..|..+.+|+.|++ .++-++.+|..+.++++|++|+++.+. +...
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~--------------~nnqie~lp~~issl~klr~lnvgmnr-l~~l 94 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNL--------------SNNQIEELPTSISSLPKLRILNVGMNR-LNIL 94 (264)
T ss_pred chhhhhhhhcccC-ceeecCCcHHHhhhhhhhhc--------------ccchhhhcChhhhhchhhhheecchhh-hhcC
Confidence 4567778889998 88899999999999999999 557888999999999999999988554 5555
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLI 201 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (407)
+.+. ++|+.|+.|++..+.......| +.+-.+..|+.|-++.++ .+.++.. ++ .+++|+.|.+.
T Consensus 95 prgf----gs~p~levldltynnl~e~~lp-gnff~m~tlralyl~dnd-fe~lp~d---------vg-~lt~lqil~lr 158 (264)
T KOG0617|consen 95 PRGF----GSFPALEVLDLTYNNLNENSLP-GNFFYMTTLRALYLGDND-FEILPPD---------VG-KLTNLQILSLR 158 (264)
T ss_pred cccc----CCCchhhhhhccccccccccCC-cchhHHHHHHHHHhcCCC-cccCChh---------hh-hhcceeEEeec
Confidence 5554 6688888898888766554333 345566777777777653 3332211 11 24666766666
Q ss_pred ccccccccccCCCccccCCCccEEeEecCCCCccccC
Q 047829 202 DLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFIS 238 (407)
Q Consensus 202 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 238 (407)
+.. +-+++. .++.+.+|++|+|.+ ++++.++|
T Consensus 159 dnd-ll~lpk---eig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 159 DND-LLSLPK---EIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred cCc-hhhCcH---HHHHHHHHHHHhccc-ceeeecCh
Confidence 542 222222 233566777777765 45655544
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.6e-09 Score=93.49 Aligned_cols=164 Identities=15% Similarity=0.034 Sum_probs=75.1
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCN 211 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 211 (407)
+.+|+.|.+.+...-.. ....+.+-.+|+.++++.|+.++....- -.+. ..+.|.+|++++|.-.++...
T Consensus 209 C~kLk~lSlEg~~LdD~--I~~~iAkN~~L~~lnlsm~sG~t~n~~~-------ll~~-scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDP--IVNTIAKNSNLVRLNLSMCSGFTENALQ-------LLLS-SCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHhhhhccccccccCcH--HHHHHhccccceeeccccccccchhHHH-------HHHH-hhhhHhhcCchHhhccchhhh
Confidence 55666666665443322 1222445556666666666655442210 0000 124556666666543333211
Q ss_pred CCCccccCCCccEEeEecCCCC-ccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccc
Q 047829 212 FTGNIIELPMFWSLTIENCPDM-ETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLH 290 (407)
Q Consensus 212 ~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 290 (407)
.. ..+--++|+.|++++|.+- ..--......++++|.+|++++|.++.+- .+..+..|+.|+.|.++.|.
T Consensus 279 v~-V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~--------~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 279 VA-VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND--------CFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HH-HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch--------HHHHHHhcchheeeehhhhc
Confidence 11 1112246666666666421 11111223455666666666666665532 11224456666666666654
Q ss_pred ccccccccccccccccCCcCceeeccC
Q 047829 291 KVQHLWKENAESNKVFANLKSPEISEC 317 (407)
Q Consensus 291 ~l~~l~~~~~~~~~~~~~L~~L~l~~c 317 (407)
.+ +++.+-.+...|+|.+|++.+|
T Consensus 350 ~i---~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 350 DI---IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CC---ChHHeeeeccCcceEEEEeccc
Confidence 32 2222222233555555555554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-08 Score=86.93 Aligned_cols=174 Identities=14% Similarity=0.068 Sum_probs=115.0
Q ss_pred HHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 95 QKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 95 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
..+...+..+.+|+.|.+.+..--.++.... ..=.+|++|+++.|..++.....-++..++.|..|++++|.....
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i----AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLRLDDPIVNTI----AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred HHHHHHHHHHHhhhhccccccccCcHHHHHH----hccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 3455566777888888888776222222222 113789999999999887655556788999999999999965443
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecc
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 254 (407)
.... ...++ =++|..|+++++..--.......-...+|+|.+|++++|..++......+ ..++.|++|.++
T Consensus 276 ~Vtv-----~V~hi---se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSls 346 (419)
T KOG2120|consen 276 KVTV-----AVAHI---SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLS 346 (419)
T ss_pred hhhH-----HHhhh---chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-Hhcchheeeehh
Confidence 3211 11111 16788899988754211111111133689999999999988876443333 348999999999
Q ss_pred cccccchhhhccccccccccccccCCcceEecccc
Q 047829 255 KLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
.|..+..- -+-.+...|+|.+|++.+|
T Consensus 347 RCY~i~p~--------~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDIIPE--------TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCCChH--------HeeeeccCcceEEEEeccc
Confidence 99876421 1122567899999999985
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.2e-06 Score=76.61 Aligned_cols=134 Identities=16% Similarity=0.193 Sum_probs=65.8
Q ss_pred ccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccc
Q 047829 157 CLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETF 236 (407)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~ 236 (407)
.+++++.|++++| .++.++. .-++|++|.+.+|..+..++.. -+++|+.|.+.+|.++..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-------------LP~sLtsL~Lsnc~nLtsLP~~-----LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-------------LPNELTEITIENCNNLTTLPGS-----IPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-------------CCCCCcEEEccCCCCcccCCch-----hhhhhhheEccCccccccc
Confidence 3456666666666 4444331 1135666666666666554321 1346777777766655443
Q ss_pred cCcccccccCCCceeecccccccchhhhccccccccccccc-cCCcceEecccccccc--cccccccccccccCCcCcee
Q 047829 237 ISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVT-FPQLRFLELSRLHKVQ--HLWKENAESNKVFANLKSPE 313 (407)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~~l~--~l~~~~~~~~~~~~~L~~L~ 313 (407)
.++|++|++.. ..... +.. .++|+.|.+.+..... .++ ..+ .++|+.|.
T Consensus 111 --------P~sLe~L~L~~-n~~~~-------------L~~LPssLk~L~I~~~n~~~~~~lp-~~L-----PsSLk~L~ 162 (426)
T PRK15386 111 --------PESVRSLEIKG-SATDS-------------IKNVPNGLTSLSINSYNPENQARID-NLI-----SPSLKTLS 162 (426)
T ss_pred --------ccccceEEeCC-CCCcc-------------cccCcchHhheeccccccccccccc-ccc-----CCcccEEE
Confidence 23455555532 11111 112 2356666664322111 111 111 35677777
Q ss_pred eccCccccccccccccccccCEEEecc
Q 047829 314 ISECSKLQKLVPASWHLENLATLKVSK 340 (407)
Q Consensus 314 l~~c~~l~~l~~~~~~~~~L~~L~l~~ 340 (407)
+.+|..+. +|..+. .+|+.|.++.
T Consensus 163 Is~c~~i~-LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 163 LTGCSNII-LPEKLP--ESLQSITLHI 186 (426)
T ss_pred ecCCCccc-Cccccc--ccCcEEEecc
Confidence 77776542 332222 4777777765
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.1e-06 Score=80.20 Aligned_cols=86 Identities=21% Similarity=0.246 Sum_probs=63.9
Q ss_pred cccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchh
Q 047829 274 EKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLST 352 (407)
Q Consensus 274 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~ 352 (407)
.+..+++|+.+++++ +.++.+...+|.. ...++.|.+..+ ++..+.. .+..+..|++|++++ +.++.+. .+.
T Consensus 269 cf~~L~~L~~lnlsn-N~i~~i~~~aFe~---~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~-~~a 341 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSN-NKITRIEDGAFEG---AAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVA-PGA 341 (498)
T ss_pred HHhhcccceEeccCC-Cccchhhhhhhcc---hhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEe-ccc
Confidence 355688999999998 7888888888876 788999999875 3454432 345678999999998 6776663 344
Q ss_pred hhccccCCEEEEec
Q 047829 353 SESLVNLERMKITD 366 (407)
Q Consensus 353 ~~~l~~L~~L~i~~ 366 (407)
+..+.+|.+|.+..
T Consensus 342 F~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLS 355 (498)
T ss_pred ccccceeeeeehcc
Confidence 56677888887643
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-06 Score=70.86 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=12.0
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
.+++.|++.++ .+.... .....+.+|++|++++| .++++. ++..+++|++|.+.
T Consensus 19 ~~~~~L~L~~n-~I~~Ie--~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 19 VKLRELNLRGN-QISTIE--NLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLS 72 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--
T ss_pred ccccccccccc-cccccc--chhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccC
Confidence 35677777764 233221 10114567777777777 666654 45666777777774
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.4e-07 Score=88.96 Aligned_cols=122 Identities=14% Similarity=0.050 Sum_probs=64.8
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc-cccceeeccCCccccccccCCCCCcccEEeccccccccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC-DSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFC 210 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 210 (407)
+++|+.+.+.+|..+.+.........+++|+.|++++| ......+... .......++|+.|++..+..+.+.-
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL------LLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh------hhhhhhcCCcCccchhhhhccCchh
Confidence 56677777777666654222233556677777777663 2211111000 0011123566667766665443321
Q ss_pred cCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccc
Q 047829 211 NFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEE 260 (407)
Q Consensus 211 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 260 (407)
... ....+++|+.|.+.+|..++......++..+++|++|++++|..+.
T Consensus 261 l~~-l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 261 LSA-LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HHH-HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 000 0112667777777777666655555566667777777777777653
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.6e-06 Score=77.80 Aligned_cols=209 Identities=13% Similarity=0.083 Sum_probs=119.9
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCC--ccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCP--DMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~--~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
-+.+|+...|.+++ ....+...+...|+.++.||++.+= +...+...+.++|+|+.|+++..+-.. .
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~----------~ 187 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN----------F 187 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC----------C
Confidence 47888888888863 4433333345678999999999862 222455556789999999996411110 0
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcc--eeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccc
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLK--EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDS 171 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 171 (407)
+...-. ..+++|+.|.++.|. ++ ++-... ..||+|..|.+.+|..... ......-+..|+.|++++++.
T Consensus 188 ~~s~~~--~~l~~lK~L~l~~CG-ls~k~V~~~~----~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 188 ISSNTT--LLLSHLKQLVLNSCG-LSWKDVQWIL----LTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred ccccch--hhhhhhheEEeccCC-CCHHHHHHHH----HhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcc
Confidence 100100 145788999999887 44 111111 3478899999988853321 112234556788999998764
Q ss_pred cceeeccCCccccccccCCCCCcccEEeccccccccccccCCC----ccccCCCccEEeEecCCCCccccCcccccccCC
Q 047829 172 LEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTG----NIIELPMFWSLTIENCPDMETFISNSTSILHMT 247 (407)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~----~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 247 (407)
+.. .+.. ....||.|+.|.++.+ ++.++..... -...|++|+.|.+.. +.+..+....-.+.+++
T Consensus 259 i~~-~~~~--------~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 259 IDF-DQGY--------KVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLEN 327 (505)
T ss_pred ccc-cccc--------ccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccch
Confidence 433 2111 1124678888777754 2322211111 123578899988876 34444433222344667
Q ss_pred Cceeeccc
Q 047829 248 ADNKEPQK 255 (407)
Q Consensus 248 L~~L~l~~ 255 (407)
|++|.+..
T Consensus 328 lk~l~~~~ 335 (505)
T KOG3207|consen 328 LKHLRITL 335 (505)
T ss_pred hhhhhccc
Confidence 77776543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.4e-05 Score=70.74 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=86.2
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
++++.|++++| .++.++. -+++|+.|.+.+|..++.++. .+ .++|++|.+++|..+..+
T Consensus 52 ~~l~~L~Is~c-~L~sLP~------LP~sLtsL~Lsnc~nLtsLP~-~L---P~nLe~L~Ls~Cs~L~sL---------- 110 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPV------LPNELTEITIENCNNLTTLPG-SI---PEGLEKLTVCHCPEISGL---------- 110 (426)
T ss_pred cCCCEEEeCCC-CCcccCC------CCCCCcEEEccCCCCcccCCc-hh---hhhhhheEccCccccccc----------
Confidence 78889999988 6776641 245799999999999877653 21 568999999999766432
Q ss_pred ccccccCCcceEeccc--ccccccccccccccccccCCcCceeeccCcccc--ccccccccccccCEEEeccCcCccccc
Q 047829 273 DEKVTFPQLRFLELSR--LHKVQHLWKENAESNKVFANLKSPEISECSKLQ--KLVPASWHLENLATLKVSKCHGLINLL 348 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~--~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~~~ 348 (407)
.++|+.|++.. +..+..+ .++|+.|.+.+..... .+|. .-.++|++|.+++|..+. +
T Consensus 111 -----P~sLe~L~L~~n~~~~L~~L----------PssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-L- 171 (426)
T PRK15386 111 -----PESVRSLEIKGSATDSIKNV----------PNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-L- 171 (426)
T ss_pred -----ccccceEEeCCCCCcccccC----------cchHhheecccccccccccccc--ccCCcccEEEecCCCccc-C-
Confidence 24788888764 2223333 3467788875433211 1111 112589999999988653 2
Q ss_pred CchhhhccccCCEEEEecc
Q 047829 349 TLSTSESLVNLERMKITDC 367 (407)
Q Consensus 349 ~~~~~~~l~~L~~L~i~~c 367 (407)
+..++ .+|+.|.+..+
T Consensus 172 P~~LP---~SLk~L~ls~n 187 (426)
T PRK15386 172 PEKLP---ESLQSITLHIE 187 (426)
T ss_pred ccccc---ccCcEEEeccc
Confidence 22222 58889988764
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.5e-06 Score=85.81 Aligned_cols=120 Identities=22% Similarity=0.243 Sum_probs=54.2
Q ss_pred cCCccEEeecCCCcccc--ccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcce
Q 047829 43 FPSLERVSVTFCPDMKT--FSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKE 120 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 120 (407)
++.|+.|.+.+|..+.. +-.....+++|++|++.++ +..+. ......+.....+++|+.|+++++..+.+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~------~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC--CLLIT------LSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCc--ccccc------cchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 56666666666655554 3334455666666666431 00000 00000111223345566666665554433
Q ss_pred eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccc
Q 047829 121 IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSL 172 (407)
Q Consensus 121 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (407)
.-... +. ..+++|+.|.+.+|..+++.........+++|+.|++++|..+
T Consensus 259 ~~l~~-l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 259 IGLSA-LA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhHHH-HH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 22111 11 1245566666555554433323333445555666666655443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.1e-05 Score=65.74 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=46.7
Q ss_pred cCCCceeecccccccchhhhcccccccccccc-ccCCcceEecccccccccccccccccccccCCcCceeeccCcccccc
Q 047829 245 HMTADNKEPQKLKSEENLLVADQIQHLFDEKV-TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKL 323 (407)
Q Consensus 245 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l 323 (407)
+..+++|++.++.--. ++..+ .+.+|+.|++++ +.++.+.. ++ .++.|+.|+++++ .++.+
T Consensus 18 ~~~~~~L~L~~n~I~~-----------Ie~L~~~l~~L~~L~Ls~-N~I~~l~~--l~---~L~~L~~L~L~~N-~I~~i 79 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-----------IENLGATLDKLEVLDLSN-NQITKLEG--LP---GLPRLKTLDLSNN-RISSI 79 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TT-S--S--TT---------TT--EEE--SS----S-
T ss_pred cccccccccccccccc-----------ccchhhhhcCCCEEECCC-CCCccccC--cc---ChhhhhhcccCCC-CCCcc
Confidence 4567888887764211 11143 478999999998 45666542 22 3889999999875 45666
Q ss_pred cccc-ccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecC
Q 047829 324 VPAS-WHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 397 (407)
Q Consensus 324 ~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~ 397 (407)
.+.+ ..+|+|++|++++ +.+.++-.-.....+++|+.|++.++|--+.-. =....+..+|+|+.||-.
T Consensus 80 ~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~-----YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN-----YRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTT-----HHHHHHHH-TT-SEETTE
T ss_pred ccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhh-----HHHHHHHHcChhheeCCE
Confidence 4434 3689999999987 677666433445678999999999886422110 001224567778777643
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00012 Score=49.82 Aligned_cols=57 Identities=30% Similarity=0.437 Sum_probs=27.7
Q ss_pred CcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 308 NLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 308 ~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
+|+.|++++| +++.+|+ .+..+++|++|++++ +.++.+.+ ..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEET-TTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCH-HHHcCCCCCCEEeCcCC
Confidence 4455555554 3444442 334455555555553 34444422 23345555555555554
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0001 Score=50.20 Aligned_cols=58 Identities=29% Similarity=0.402 Sum_probs=36.8
Q ss_pred CCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccC
Q 047829 279 PQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKC 341 (407)
Q Consensus 279 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 341 (407)
|+|+.|+++++ .+..++.+.+.. +++|+.|+++++ .++.+++ .+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~---l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSN---LPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTT---GTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcC---CCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 46677777764 666666665554 677777777754 3455543 4466777777777664
|
... |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=5.4e-06 Score=75.75 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=64.0
Q ss_pred cceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEeecccccccccCcchhhHHHHH
Q 047829 20 LKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCY 98 (407)
Q Consensus 20 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 98 (407)
-..++|.. ..++.+|... ...+++||.||++++ .+..| |..+..+++|-.|.+.+ ++.|+.+|
T Consensus 69 tveirLdq-N~I~~iP~~a-F~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg-------------~NkI~~l~ 132 (498)
T KOG4237|consen 69 TVEIRLDQ-NQISSIPPGA-FKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYG-------------NNKITDLP 132 (498)
T ss_pred ceEEEecc-CCcccCChhh-ccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhc-------------CCchhhhh
Confidence 34455555 4566666654 557788888888887 45443 33444466666666632 14455666
Q ss_pred Hh-hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcc
Q 047829 99 KE-MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRN 168 (407)
Q Consensus 99 ~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 168 (407)
.. +.++..++-|.+.-+. +.-..... | ..++++..|.++++..- . ...+.+..+..++.+++..
T Consensus 133 k~~F~gL~slqrLllNan~-i~Cir~~a-l--~dL~~l~lLslyDn~~q-~-i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANH-INCIRQDA-L--RDLPSLSLLSLYDNKIQ-S-ICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hhHhhhHHHHHHHhcChhh-hcchhHHH-H--HHhhhcchhcccchhhh-h-hccccccchhccchHhhhc
Confidence 43 3455556655555433 11000000 1 22455666666654332 1 2223344555555555543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=6e-05 Score=76.64 Aligned_cols=87 Identities=13% Similarity=0.218 Sum_probs=47.5
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
-||+|++|.+.+- .+..-.....+.+||+|+.||++++ .+..+ .+++++.+||.|.+++ ++-.-.
T Consensus 146 ~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrn------------Le~e~~ 210 (699)
T KOG3665|consen 146 MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRN------------LEFESY 210 (699)
T ss_pred hCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccC------------CCCCch
Confidence 3667777766663 2221112222456777777777776 55555 4667777777777743 110000
Q ss_pred HHHHhhcCCCCccEEEeccCCC
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPR 117 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~ 117 (407)
.-..++..+++|++||||....
T Consensus 211 ~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 211 QDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred hhHHHHhcccCCCeeecccccc
Confidence 1112345567777777776553
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.35 E-value=9.5e-05 Score=65.46 Aligned_cols=109 Identities=25% Similarity=0.266 Sum_probs=70.8
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
..-.|+++.|+++. +.+..+.. + ..+++|..|+++++ .+..+.-+-..+.+.++|.+++ +.++++ +...
T Consensus 303 vKL~Pkir~L~lS~-N~i~~v~n--L---a~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~L---SGL~ 371 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQ-NRIRTVQN--L---AELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETL---SGLR 371 (490)
T ss_pred hhhccceeEEeccc-cceeeehh--h---hhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhh---hhhH
Confidence 34468888888887 34444433 2 23778888888874 3444444445577888888887 566665 3455
Q ss_pred ccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCCC
Q 047829 355 SLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPS 401 (407)
Q Consensus 355 ~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~ 401 (407)
.+-+|..|++.++ .+.++. +...+..+|.|+++.+.+.|-
T Consensus 372 KLYSLvnLDl~~N-~Ie~ld------eV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 372 KLYSLVNLDLSSN-QIEELD------EVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhheecccccc-chhhHH------HhcccccccHHHHHhhcCCCc
Confidence 6678888888776 444432 114566788888888877764
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.24 E-value=4.7e-05 Score=67.34 Aligned_cols=82 Identities=27% Similarity=0.312 Sum_probs=38.6
Q ss_pred CCCccEEEeccCCCcc-eeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcc
Q 047829 104 FRDIWYLQLSYFPRLK-EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELS 182 (407)
Q Consensus 104 ~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 182 (407)
+++|.+|+++++.--+ +.|+.. +.|.+.|.+.++.. .++ ..++++-+|..|++++++ ++..-...+
T Consensus 328 L~~L~~LDLS~N~Ls~~~Gwh~K------LGNIKtL~La~N~i-E~L---SGL~KLYSLvnLDl~~N~-Ie~ldeV~~-- 394 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAECVGWHLK------LGNIKTLKLAQNKI-ETL---SGLRKLYSLVNLDLSSNQ-IEELDEVNH-- 394 (490)
T ss_pred cccceEeecccchhHhhhhhHhh------hcCEeeeehhhhhH-hhh---hhhHhhhhheeccccccc-hhhHHHhcc--
Confidence 3455555555544111 223322 56666666666432 221 225666666666666642 222211111
Q ss_pred ccccccCCCCCcccEEeccccc
Q 047829 183 AKEEHIGPLFPSLSWLRLIDLP 204 (407)
Q Consensus 183 ~~~~~~~~~~~~L~~L~l~~~~ 204 (407)
++ .+|.|+.+.+.+.+
T Consensus 395 -----IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 395 -----IG-NLPCLETLRLTGNP 410 (490)
T ss_pred -----cc-cccHHHHHhhcCCC
Confidence 11 24666666666554
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00018 Score=65.01 Aligned_cols=180 Identities=14% Similarity=0.042 Sum_probs=81.0
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcce--eccCCCCCccccCCceEEEEec--CCCCCc-CC-----ccchhhccccCCe
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLKE--IWHGQALPVSFFNNLCKLVVDD--CTNMSS-AI-----PVNLLRCLNNLGW 163 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~l~~L~~L~l~~--~~~~~~-~~-----~~~~~~~l~~L~~ 163 (407)
.+.+.+.+-.+..+.+|++++++--.. -|....+ ..-++|+..++++ .....+ ++ ....+...|+|+.
T Consensus 19 ~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L--~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 19 EKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVL--ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQK 96 (382)
T ss_pred hhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHH--hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence 344555566777788888887762111 1111101 1124555555543 111111 11 1123445667888
Q ss_pred eEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC-----------CCccccCCCccEEeEecCCC
Q 047829 164 LEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF-----------TGNIIELPMFWSLTIENCPD 232 (407)
Q Consensus 164 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-----------~~~~~~~~~L~~L~l~~c~~ 232 (407)
+++|.|.--. .+...+...+.. ...|+.|.+.+|. +...-.. ..-..+.+.|+.+.+.+ ++
T Consensus 97 ldLSDNA~G~-----~g~~~l~~ll~s-~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nr 168 (382)
T KOG1909|consen 97 LDLSDNAFGP-----KGIRGLEELLSS-CTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NR 168 (382)
T ss_pred eeccccccCc-----cchHHHHHHHHh-ccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cc
Confidence 8888753111 111111111222 2677777777763 2110000 00123456777777765 33
Q ss_pred CccccC---cccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccc
Q 047829 233 METFIS---NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSR 288 (407)
Q Consensus 233 l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 288 (407)
+...+. ...++..++|+.+.++.+..... ++......+..+++|+.|++.+
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~e-----G~~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPE-----GVTALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCc-----hhHHHHHHHHhCCcceeeeccc
Confidence 433322 12244556666666655432211 1111222345566777777766
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00017 Score=73.34 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=89.0
Q ss_pred CCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccc
Q 047829 104 FRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSA 183 (407)
Q Consensus 104 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 183 (407)
-.+|++|+|++...+...|... +. ..||+|+.|.+.+-....+- .......+|+|..|||++++ ++.+ .+.+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~k-ig-~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS- 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKK-IG-TMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTN-ISNL---SGIS- 192 (699)
T ss_pred HHhhhhcCccccchhhccHHHH-Hh-hhCcccceEEecCceecchh-HHHHhhccCccceeecCCCC-ccCc---HHHh-
Confidence 3679999999988887778544 33 45899999999884443221 22445789999999999964 3333 2222
Q ss_pred cccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCcccc-Cc---ccccccCCCceeeccccccc
Q 047829 184 KEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFI-SN---STSILHMTADNKEPQKLKSE 259 (407)
Q Consensus 184 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~---~~~~~l~~L~~L~l~~~~~l 259 (407)
.+++|+.|.+.+++--. +........+.+|+.|++++-....... .. .-...+|+|+.|+.++...-
T Consensus 193 -------~LknLq~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 193 -------RLKNLQVLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred -------ccccHHHHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 35788888888765322 1111134568899999998744332220 00 00123788888888765544
Q ss_pred ch
Q 047829 260 EN 261 (407)
Q Consensus 260 ~~ 261 (407)
.+
T Consensus 264 ~~ 265 (699)
T KOG3665|consen 264 EE 265 (699)
T ss_pred HH
Confidence 33
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.001 Score=63.94 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=109.8
Q ss_pred ccCCccEEeecCCCccccccccccCCC-CcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcce
Q 047829 42 EFPSLERVSVTFCPDMKTFSQGILSTP-KLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKE 120 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 120 (407)
.+..++.|++.+. .+.++|...+.+. +|+.|++.. +.+..++..+..+++|+.|+++.++ +.+
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~--------------N~i~~l~~~~~~l~~L~~L~l~~N~-l~~ 177 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD--------------NKIESLPSPLRNLPNLKNLDLSFND-LSD 177 (394)
T ss_pred cccceeEEecCCc-ccccCccccccchhhcccccccc--------------cchhhhhhhhhccccccccccCCch-hhh
Confidence 4577888888887 7778887777774 899999854 5667777778888999999999887 443
Q ss_pred eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEec
Q 047829 121 IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRL 200 (407)
Q Consensus 121 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 200 (407)
.+... ...++|+.|.++++.. .+++.. +.....|+.+.++++..+..+.... .+.++..+.+
T Consensus 178 l~~~~----~~~~~L~~L~ls~N~i-~~l~~~--~~~~~~L~~l~~~~N~~~~~~~~~~-----------~~~~l~~l~l 239 (394)
T COG4886 178 LPKLL----SNLSNLNNLDLSGNKI-SDLPPE--IELLSALEELDLSNNSIIELLSSLS-----------NLKNLSGLEL 239 (394)
T ss_pred hhhhh----hhhhhhhheeccCCcc-ccCchh--hhhhhhhhhhhhcCCcceecchhhh-----------hccccccccc
Confidence 33221 1468888999988654 444443 2345558888888774333222111 1244444443
Q ss_pred cccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccccc
Q 047829 201 IDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSE 259 (407)
Q Consensus 201 ~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 259 (407)
.+.. +..+.. ....++.++.|++.++ .+..+.. ...+.+++.|++++....
T Consensus 240 ~~n~-~~~~~~---~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 240 SNNK-LEDLPE---SIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred CCce-eeeccc---hhccccccceeccccc-ccccccc---ccccCccCEEeccCcccc
Confidence 3332 221111 2335667888888763 4555443 234778888888776544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0012 Score=63.58 Aligned_cols=191 Identities=15% Similarity=0.127 Sum_probs=105.3
Q ss_pred EEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCC-CccEEEeccCCCcceeccCCC
Q 047829 48 RVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFR-DIWYLQLSYFPRLKEIWHGQA 126 (407)
Q Consensus 48 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~ 126 (407)
.++.... .+..-+..+..++.++.|.+. +..+.+++....... +|+.|++++.. ++..+...
T Consensus 97 ~l~~~~~-~~~~~~~~~~~~~~l~~L~l~--------------~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~- 159 (394)
T COG4886 97 SLDLNLN-RLRSNISELLELTNLTSLDLD--------------NNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPL- 159 (394)
T ss_pred eeecccc-ccccCchhhhcccceeEEecC--------------CcccccCccccccchhhcccccccccc-hhhhhhhh-
Confidence 3455544 332223344555677777773 344555666666664 88888888877 44331111
Q ss_pred CCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccc
Q 047829 127 LPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKL 206 (407)
Q Consensus 127 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 206 (407)
..+++|+.|.+.+|... +++.. ....+.|+.|+++++ .+..++.... ...+|+++.+.+...+
T Consensus 160 ---~~l~~L~~L~l~~N~l~-~l~~~--~~~~~~L~~L~ls~N-~i~~l~~~~~----------~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 160 ---RNLPNLKNLDLSFNDLS-DLPKL--LSNLSNLNNLDLSGN-KISDLPPEIE----------LLSALEELDLSNNSII 222 (394)
T ss_pred ---hccccccccccCCchhh-hhhhh--hhhhhhhhheeccCC-ccccCchhhh----------hhhhhhhhhhcCCcce
Confidence 44788889888887654 33332 237788888888886 4444443210 1244777777765423
Q ss_pred cccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEec
Q 047829 207 KRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLEL 286 (407)
Q Consensus 207 ~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 286 (407)
..+. .+..+.++..+.+.. .++... + .....+++++.|+++++.... ....+.+.+++.|++
T Consensus 223 ~~~~----~~~~~~~l~~l~l~~-n~~~~~-~-~~~~~l~~l~~L~~s~n~i~~-----------i~~~~~~~~l~~L~~ 284 (394)
T COG4886 223 ELLS----SLSNLKNLSGLELSN-NKLEDL-P-ESIGNLSNLETLDLSNNQISS-----------ISSLGSLTNLRELDL 284 (394)
T ss_pred ecch----hhhhcccccccccCC-ceeeec-c-chhccccccceeccccccccc-----------cccccccCccCEEec
Confidence 2221 122344445444322 222221 1 123346778888886664321 222556778888888
Q ss_pred cccc
Q 047829 287 SRLH 290 (407)
Q Consensus 287 ~~~~ 290 (407)
++..
T Consensus 285 s~n~ 288 (394)
T COG4886 285 SGNS 288 (394)
T ss_pred cCcc
Confidence 8743
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0036 Score=63.77 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=32.8
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
+..+++|+.|+++++.-.+.+|.. +..+++|+.|+++++.....+|..+..+++|+.|+++++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 344556666666653322333332 222556666666655444455555556666666666553
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0027 Score=39.75 Aligned_cols=30 Identities=13% Similarity=0.357 Sum_probs=13.3
Q ss_pred CccEEeecCCCccccccccccCCCCcceeEE
Q 047829 45 SLERVSVTFCPDMKTFSQGILSTPKLHKVQV 75 (407)
Q Consensus 45 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 75 (407)
+|++|+++++ .+.++|..+.++++|++|++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l 31 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNL 31 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEe
Confidence 4445555544 44444433444444444444
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0051 Score=62.70 Aligned_cols=31 Identities=6% Similarity=0.047 Sum_probs=15.6
Q ss_pred ccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 46 LERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 46 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
++.|+++++.--..+|..+..+++|+.|++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls 450 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLS 450 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECC
Confidence 4555555553223455555555555555553
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.008 Score=37.63 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=31.1
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCcccccc
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS 61 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp 61 (407)
++|++|+++++ ++++++.. ...+++|++|+++++ .+.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCCc
Confidence 57999999995 78888763 458999999999999 566665
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.018 Score=51.42 Aligned_cols=197 Identities=17% Similarity=0.035 Sum_probs=96.9
Q ss_pred cCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCC
Q 047829 65 LSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCT 144 (407)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 144 (407)
..++.++++++.+ +.-+....+..-...++.|++|+++.++--..+..-. .| ..+|+.|.+.+..
T Consensus 68 ~~~~~v~elDL~~-----------N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p---~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 68 SSVTDVKELDLTG-----------NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LP---LKNLRVLVLNGTG 132 (418)
T ss_pred HHhhhhhhhhccc-----------chhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-cc---ccceEEEEEcCCC
Confidence 3356777777753 1112334455555677899999999877222222111 22 4788888887643
Q ss_pred CCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCC-ccccCCCcc
Q 047829 145 NMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTG-NIIELPMFW 223 (407)
Q Consensus 145 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~-~~~~~~~L~ 223 (407)
.-+. -....+..+|.+++|+++.|+ ...+..-..+. .+.-+.++++....|.... |.... ...-||++.
T Consensus 133 L~w~-~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~------e~~s~~v~tlh~~~c~~~~--w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 133 LSWT-QSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCI------EDWSTEVLTLHQLPCLEQL--WLNKNKLSRIFPNVN 202 (418)
T ss_pred CChh-hhhhhhhcchhhhhhhhccch-hhhhccccccc------cccchhhhhhhcCCcHHHH--HHHHHhHHhhcccch
Confidence 3221 122335677888888887652 22221111111 0111456666666554221 21111 012367777
Q ss_pred EEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 224 SLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 224 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
.+.+..|| ++......-...++.+-.|.+... ++.. .++.+++..|++|+.|.++..+-...+
T Consensus 203 sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~ids-------wasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 203 SVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDS-------WASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred heeeecCc-ccchhhcccCCCCCcchhhhhccc-cccc-------HHHHHHHcCCchhheeeccCCcccccc
Confidence 77776664 222211111111333333333211 1111 344556777888888888876555444
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.003 Score=61.00 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=49.8
Q ss_pred CccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccC
Q 047829 45 SLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHG 124 (407)
Q Consensus 45 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 124 (407)
=|++|-++++ +++.+|..++-.+.|..|+... +.+..+|..++++.+|+.|.+..+. +.+++..
T Consensus 144 pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~--------------nei~slpsql~~l~slr~l~vrRn~-l~~lp~E 207 (722)
T KOG0532|consen 144 PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK--------------NEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE 207 (722)
T ss_pred cceeEEEecC-ccccCCcccccchhHHHhhhhh--------------hhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH
Confidence 3555555555 5556666666555555555532 3344455555555555555555443 2222111
Q ss_pred CCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 125 QALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 125 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
. . .-.|..|+++. +.+..+|.. +.+|++|++|.+.+|
T Consensus 208 l----~-~LpLi~lDfSc-Nkis~iPv~--fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 208 L----C-SLPLIRLDFSC-NKISYLPVD--FRKMRHLQVLQLENN 244 (722)
T ss_pred H----h-CCceeeeeccc-Cceeecchh--hhhhhhheeeeeccC
Confidence 1 1 12355555543 333334443 566666666666654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0011 Score=55.68 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=45.5
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCccccccc--cccccccccCEEEeccCcCcccccCchhhhccc
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLV--PASWHLENLATLKVSKCHGLINLLTLSTSESLV 357 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 357 (407)
.++.++-+++ .+-.+++..+.+++.++.|.+.+|..+.+.- .-.+..++|++|++++|+.+++-.- .....++
T Consensus 102 ~IeaVDAsds----~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDS----SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLK 176 (221)
T ss_pred eEEEEecCCc----hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhh
Confidence 4445555552 2222333333446667777777776654321 0112456777777777777766522 2334456
Q ss_pred cCCEEEEecccch
Q 047829 358 NLERMKITDCKMM 370 (407)
Q Consensus 358 ~L~~L~i~~c~~l 370 (407)
+|+.|.+.+.+.+
T Consensus 177 nLr~L~l~~l~~v 189 (221)
T KOG3864|consen 177 NLRRLHLYDLPYV 189 (221)
T ss_pred hhHHHHhcCchhh
Confidence 6666666665443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.0092 Score=53.20 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=16.6
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
..++++++.+|.....--....+.++|+|+.|+++.|
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N 107 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN 107 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC
Confidence 4455555555433221111123455666666666543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.0034 Score=60.69 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=87.9
Q ss_pred ccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHH
Q 047829 19 ELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCY 98 (407)
Q Consensus 19 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 98 (407)
-|+.|.+++ .+++.+|.. .+..+.|..||.+.| .+..+|..++.+..|+.|.++. +-+..+|
T Consensus 144 pLkvli~sN-Nkl~~lp~~--ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR--------------n~l~~lp 205 (722)
T KOG0532|consen 144 PLKVLIVSN-NKLTSLPEE--IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR--------------NHLEDLP 205 (722)
T ss_pred cceeEEEec-CccccCCcc--cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh--------------hhhhhCC
Confidence 466666666 467777666 347799999999999 8889999999999999999853 4456677
Q ss_pred HhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccc--hhhccccCCeeEEccc
Q 047829 99 KEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVN--LLRCLNNLGWLEVRNC 169 (407)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~ 169 (407)
+++.. =.|..||++.+. +..++... ..|+.|+.|.+.+|..- . |+.. .-++..=.++|++.-|
T Consensus 206 ~El~~-LpLi~lDfScNk-is~iPv~f----r~m~~Lq~l~LenNPLq-S-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 206 EELCS-LPLIRLDFSCNK-ISYLPVDF----RKMRHLQVLQLENNPLQ-S-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHHhC-CceeeeecccCc-eeecchhh----hhhhhheeeeeccCCCC-C-ChHHHHhccceeeeeeecchhc
Confidence 77773 348888888765 66555544 55788888888876543 2 3322 2234445566777666
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.0011 Score=65.72 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=39.4
Q ss_pred hhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 100 EMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
.+..+++|++|||+.+. +..++.-. ... ..|+.|.+++|... .+ -.+.++++|+.|++++|
T Consensus 204 ~Lr~l~~LkhLDlsyN~-L~~vp~l~---~~g-c~L~~L~lrnN~l~-tL---~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNC-LRHVPQLS---MVG-CKLQLLNLRNNALT-TL---RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhcccccccccccch-hccccccc---hhh-hhheeeeecccHHH-hh---hhHHhhhhhhccchhHh
Confidence 44567888888888765 44443222 112 34888888876443 22 23688899999999875
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.0068 Score=50.97 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=44.9
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEe
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIV 77 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~ 77 (407)
.++.++.|.+.+|..+.+++.....+-.++|+.|++++|+++++. ...+.++++|+.|.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 356777778888888888877765556788888888888888742 23456677777777754
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.036 Score=28.77 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=15.1
Q ss_pred CccEEeecCCCcccccccccc
Q 047829 45 SLERVSVTFCPDMKTFSQGIL 65 (407)
Q Consensus 45 ~L~~L~l~~c~~l~~lp~~~~ 65 (407)
+|++|++++| .++.+|..++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 4788888888 7778886544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.14 Score=43.32 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=28.1
Q ss_pred cCCcCceeeccCcccccccccc-ccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 306 FANLKSPEISECSKLQKLVPAS-WHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
++.|..|.+.++. +..+.+.+ ..+|+|+.|.+.+ +.+..+..-.-...+|.|++|.+.+.
T Consensus 63 l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 63 LPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ccccceEEecCCc-ceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCC
Confidence 4555555555432 33333323 2345566666655 33333322222334556666665554
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.064 Score=25.89 Aligned_cols=17 Identities=12% Similarity=0.391 Sum_probs=8.5
Q ss_pred CCccEEeecCCCcccccc
Q 047829 44 PSLERVSVTFCPDMKTFS 61 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp 61 (407)
++|+.|++++| .++.+|
T Consensus 1 ~~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCC-CCCCCc
Confidence 35677777777 355554
|
... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.021 Score=49.97 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=21.7
Q ss_pred cCCceEEEEecC--CCCCcCCccchhhccccCCeeEEccc
Q 047829 132 FNNLCKLVVDDC--TNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 132 l~~L~~L~l~~~--~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
+++|+.|.++.+ +....+... ..++|+|+++++++|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhcccCCcccccccceeh--hhhCCceeEEeecCC
Confidence 667777777766 433333332 455577777777765
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.015 Score=58.13 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=40.1
Q ss_pred cccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhh
Q 047829 276 VTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 276 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
..++.++.|+|+. ++++.+.. +..++.|+.|+++-+ .+..+|-. ...+ .|+.|.+.+ +.++.+ ...+
T Consensus 184 qll~ale~LnLsh-Nk~~~v~~-----Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL---~gie 251 (1096)
T KOG1859|consen 184 QLLPALESLNLSH-NKFTKVDN-----LRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRN-NALTTL---RGIE 251 (1096)
T ss_pred HHHHHhhhhccch-hhhhhhHH-----HHhcccccccccccc-hhccccccchhhh-hheeeeecc-cHHHhh---hhHH
Confidence 3455666666665 34443331 223566666666542 24444421 1222 266666665 445444 2345
Q ss_pred ccccCCEEEEecc
Q 047829 355 SLVNLERMKITDC 367 (407)
Q Consensus 355 ~l~~L~~L~i~~c 367 (407)
++.+|+.|+++++
T Consensus 252 ~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYN 264 (1096)
T ss_pred hhhhhhccchhHh
Confidence 5666666666553
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.31 Score=41.27 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=52.5
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhc-CCCCccEEEeccCCCcceec
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMI-GFRDIWYLQLSYFPRLKEIW 122 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~ 122 (407)
.+...+|++++ .+..++ .+..++.|.+|.+.. +.|+.+-..+. -+++|..|.+.++.-.+-..
T Consensus 42 d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~n--------------NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d 105 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNN--------------NRITRIDPDLDTFLPNLKTLILTNNSIQELGD 105 (233)
T ss_pred cccceeccccc-chhhcc-cCCCccccceEEecC--------------CcceeeccchhhhccccceEEecCcchhhhhh
Confidence 44555566665 444433 334455666666632 22222222222 12456666666654111100
Q ss_pred cCCCCCccccCCceEEEEecCCCCCcC-CccchhhccccCCeeEEcc
Q 047829 123 HGQALPVSFFNNLCKLVVDDCTNMSSA-IPVNLLRCLNNLGWLEVRN 168 (407)
Q Consensus 123 ~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~ 168 (407)
.. |.-.+++|++|.+.++.....- -....+.++|+|+.|+..+
T Consensus 106 l~---pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 106 LD---PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cc---hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 10 1133677888877776543210 1223567888899988865
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.12 Score=45.45 Aligned_cols=111 Identities=20% Similarity=0.074 Sum_probs=65.4
Q ss_pred ccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccc--ccccccccccccccccCCcCceeeccCcc
Q 047829 242 SILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLH--KVQHLWKENAESNKVFANLKSPEISECSK 319 (407)
Q Consensus 242 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~l~~l~~~~~~~~~~~~~L~~L~l~~c~~ 319 (407)
...+..|+.+.+.++...+ ......+|+|+.|.+++.. -...+..- ...+|+|+.+.++++..
T Consensus 39 ~d~~~~le~ls~~n~gltt-----------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-----------LTNFPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccccchhhhhhhccceee-----------cccCCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCcc
Confidence 3446677777776665443 1223446788999998742 22222211 12358899998887542
Q ss_pred --ccccccccccccccCEEEeccCcCcccc-cCchhhhccccCCEEEEeccc
Q 047829 320 --LQKLVPASWHLENLATLKVSKCHGLINL-LTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 320 --l~~l~~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~~l~~L~~L~i~~c~ 368 (407)
++++. ....+.+|..|++.+|+-..-. ....++.-+++|++++-.++.
T Consensus 104 ~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 104 KDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred ccccccc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 22232 2456778888888888654311 123345567888888766553
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.13 Score=46.98 Aligned_cols=197 Identities=19% Similarity=0.093 Sum_probs=107.7
Q ss_pred ecccceeeeCccccc-cccc-ccccccccCCccEEeecCCCccc-----c---------ccccccCCCCcceeEEEeecc
Q 047829 17 FSELKFLILDYLPRL-TSFC-LENYTLEFPSLERVSVTFCPDMK-----T---------FSQGILSTPKLHKVQVIVKEE 80 (407)
Q Consensus 17 l~~L~~L~l~~~~~l-~~~~-~~~~~~~~~~L~~L~l~~c~~l~-----~---------lp~~~~~l~~L~~L~l~~~~~ 80 (407)
.++|++|+|++..-= +..+ ......++..|++|.+.+|. +. . ....+..-++|+++......
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr- 168 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR- 168 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence 468888888874210 1000 11224468999999999994 22 1 22345666788888774200
Q ss_pred cccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceec--cCCCCCccccCCceEEEEecCCCCCc--CCccchhh
Q 047829 81 GELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIW--HGQALPVSFFNNLCKLVVDDCTNMSS--AIPVNLLR 156 (407)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~ 156 (407)
.+ +..-+.+-..+...+.|+.+.+..+.-....- ....+ ..+++|+.|++++|..... ......++
T Consensus 169 ------le--n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal--~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 169 ------LE--NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEAL--EHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred ------cc--cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHH--HhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 00 11222333344555788888888776322111 00001 3478999999998876532 11234567
Q ss_pred ccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccc-cCCCccccCCCccEEeEecC
Q 047829 157 CLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFC-NFTGNIIELPMFWSLTIENC 230 (407)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~-~~~~~~~~~~~L~~L~l~~c 230 (407)
.+++|++|.+++|. ++.-+ ..++...+...+|+|+.|.+..+..-.+-- .....+..-|.|+.|.++.|
T Consensus 239 s~~~L~El~l~dcl-l~~~G----a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 239 SWPHLRELNLGDCL-LENEG----AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccchheeecccccc-ccccc----HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 88899999999884 22222 222222333346899999988764321100 00001223456666666664
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.25 Score=26.77 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.1
Q ss_pred ecccceEecCCCCCcce
Q 047829 388 FRKLEYLGLDCLPSLTS 404 (407)
Q Consensus 388 ~~~L~~L~l~~cp~l~~ 404 (407)
+++|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47899999999998874
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=86.62 E-value=2.4 Score=33.10 Aligned_cols=54 Identities=13% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEec
Q 047829 279 PQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVS 339 (407)
Q Consensus 279 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~ 339 (407)
++|+++.+.. .+..++...+.. +++++.+.+.+ .+..++. .+..+++|+.+.+.
T Consensus 35 ~~l~~i~~~~--~~~~i~~~~F~~---~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 35 TSLKSINFPN--NLTSIGDNAFSN---CKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT-SEEEESS--TTSCE-TTTTTT----TT-EEEEETS--TT-EE-TTTTTT-TTECEEEET
T ss_pred cccccccccc--cccccceeeeec---ccccccccccc--cccccccccccccccccccccC
Confidence 3455555443 244444444432 44566666643 2222322 22335666666664
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.10 E-value=0.26 Score=47.78 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=14.9
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
+..|+.|++.+|.... + ..+..+++|+.++++++
T Consensus 139 l~~L~~L~l~~N~i~~-~---~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISD-I---SGLESLKSLKLLDLSYN 172 (414)
T ss_pred ccchhhheeccCcchh-c---cCCccchhhhcccCCcc
Confidence 3445555555544321 1 11233455555555554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.61 E-value=0.077 Score=47.10 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=53.4
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+.+.+.|++.+| .+.+. ..+.+++.|++|.++=+ ++..+- .+.+|.+|++|+|+. +.|..
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRk--------------N~I~s 77 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRK--------------NCIES 77 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHh--------------ccccc
Confidence 455667777776 34433 22458899999999977 565553 567889999999954 23333
Q ss_pred HH--HhhcCCCCccEEEeccCC
Q 047829 97 CY--KEMIGFRDIWYLQLSYFP 116 (407)
Q Consensus 97 l~--~~~~~~~~L~~L~l~~~~ 116 (407)
+- +.++++++|++|.|..++
T Consensus 78 ldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 78 LDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHHHHHhcCchhhhHhhccCC
Confidence 32 245677788888777666
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.57 E-value=0.31 Score=38.69 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=41.4
Q ss_pred cCCccEEeecCCCccccccccccC-CCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCC
Q 047829 43 FPSLERVSVTFCPDMKTFSQGILS-TPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFP 116 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~~lp~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 116 (407)
-..|+..+++++ .++++|..+.. ++.++++++. ++.+.++|+++..++.|+.|+++.++
T Consensus 52 ~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~--------------~neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 52 GYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLA--------------NNEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred CceEEEEecccc-hhhhCCHHHhhccchhhhhhcc--------------hhhhhhchHHHhhhHHhhhcccccCc
Confidence 466677788887 67777765543 5677788774 36677788887777777777777666
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.81 E-value=0.055 Score=47.97 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=48.1
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
.+.+.|+..+| ++.+|.. ...++.|+.|.++= ++++.+.+ ++.|++|++|++..+.. .++- ..
T Consensus 19 ~~vkKLNcwg~-~L~DIsi----c~kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN~I-~sld-------EL 81 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISI----CEKMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKNCI-ESLD-------EL 81 (388)
T ss_pred HHhhhhcccCC-CccHHHH----HHhcccceeEEeec-cccccchh---HHHHHHHHHHHHHhccc-ccHH-------HH
Confidence 45556666665 3444422 23567788887743 45555543 44688888888865431 1110 11
Q ss_pred ccccccCCcceEecccccccc
Q 047829 273 DEKVTFPQLRFLELSRLHKVQ 293 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~ 293 (407)
..+.++|+|+.|+|...+-.+
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred HHHhcCchhhhHhhccCCccc
Confidence 225667888888888755443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=83.25 E-value=6 Score=30.75 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=18.5
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEec
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVS 339 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~ 339 (407)
+++.+.+.. .+..++...+.. +++|+.+.+.. .+..++.. +..+ .|+.+.+.
T Consensus 59 ~l~~i~~~~--~~~~i~~~~F~~---~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 59 SLESITFPN--NLKSIGDNAFSN---CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-EEEEETS--TT-EE-TTTTTT----TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccc--cccccccccccc---cccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 444444432 333344333332 55666666642 23333321 2333 56666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 407 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 1e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 1e-05
Identities = 69/450 (15%), Positives = 136/450 (30%), Gaps = 136/450 (30%)
Query: 5 HVGEEVKENRIAFSEL------KFL-------ILDYL-PRLTSFCLENYTLEFPSLERVS 50
H+ E E++ + ++ F+ + D L+ +++ + ++
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 51 VTFCPDMKTFSQGILSTPKLHKVQVIVKEE--------GELYHREGNLNSTIQKCYKEMI 102
F L + + VQ V+E E S + + Y E
Sbjct: 66 RLF---------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE-- 114
Query: 103 GFRDIWYLQLSYF-----PRLKEIWHGQALPVSFFNNLCKL------VVDDCTNMS---- 147
RD Y F RL+ + L +L ++D +
Sbjct: 115 -QRDRLYNDNQVFAKYNVSRLQPYLKLR-------QALLELRPAKNVLID---GVLGSGK 163
Query: 148 SAIPVNLLR-----CLNNLG--WLEVRNCDSLEEVF-HLEEL--------SAKEEHIGPL 191
+ + +++ C + WL ++NC+S E V L++L +++ +H +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 192 FPSLSWL--RLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTAD 249
+ + L L K K + N ++ L + F + S IL T
Sbjct: 224 KLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQNAKA-----WNAF-NLSCKILLTTRF 274
Query: 250 NKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANL 309
K + L A H+ + + E +
Sbjct: 275 -------KQVTDFLSAATTTHISLDHHSMT---LTP--------------DEVKSLLLK- 309
Query: 310 KSPEISECSKLQKLVPASWHLENLATLKVSKCHGL-INLLTLSTSESLVNLERMKITDCK 368
+C + Q L P V + ++++ S + L + K +C
Sbjct: 310 ----YLDC-RPQDL-PRE----------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 369 MMEEIIQSQVG--EEAE------DCIVFRK 390
+ II+S + E AE VF
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 39/288 (13%), Positives = 93/288 (32%), Gaps = 27/288 (9%)
Query: 125 QALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184
L + ++L L +D C+ ++ ++++ + L + E+
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK------- 182
Query: 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSIL 244
+ L + L +++ + F + +E NC + + IL
Sbjct: 183 --WLHELAQHNTSLEVLNF-YMTEFAKISPKDLETIA------RNCRSLVSVKVGDFEIL 233
Query: 245 HMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNK 304
+ K L+ E ++ + ++ + R L L +
Sbjct: 234 ELVGFFKAAANLE-EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE--MPILFP 290
Query: 305 VFANLKSPEISECSKL-QKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMK 363
A ++ ++ + NL L+ G L L ++ L+R++
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL--AQYCKQLKRLR 348
Query: 364 ITDCKMME--EIIQSQVGEEAEDCIV--FRKLEYLGLDCLPSLTSFSL 407
I + E + V + + ++LEY+ + +T+ SL
Sbjct: 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESL 395
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 407 | |||
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.87 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.87 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.86 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.86 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.85 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.85 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.85 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.85 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.84 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.84 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.84 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.84 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.84 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.84 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.83 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.83 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.83 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.83 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.82 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.82 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.82 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.81 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.81 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.81 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.8 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.8 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.8 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.8 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.8 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.79 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.79 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.78 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.78 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.78 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.76 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.76 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.75 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.75 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.75 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.75 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.73 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.7 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.7 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.7 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.69 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.68 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.67 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.66 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.66 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.66 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.65 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.64 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.62 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.62 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.6 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.6 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.6 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.6 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.59 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.59 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.58 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.57 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.55 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.55 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.54 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.54 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.53 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.51 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.5 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.46 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.46 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.46 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.43 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.43 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.38 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.34 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.34 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.34 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.32 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.32 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.32 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.32 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.3 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.25 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.25 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.24 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.23 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.23 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.22 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.16 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.14 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.14 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.1 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.08 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.07 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.05 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.05 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.97 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 98.97 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.95 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.92 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.87 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.86 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.83 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.83 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.82 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.81 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.8 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.79 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.79 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.79 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.78 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.75 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.75 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.74 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.67 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.62 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.57 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.52 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.5 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.48 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.45 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.45 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.44 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.43 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.41 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.39 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.3 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.28 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.25 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.21 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.21 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.19 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.13 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.12 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.05 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.02 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.99 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.97 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.86 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.79 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.77 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.69 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.59 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.52 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.39 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.35 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.31 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.7 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.48 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.36 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.27 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 95.77 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 95.11 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 95.07 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 93.65 |
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=180.47 Aligned_cols=305 Identities=14% Similarity=0.153 Sum_probs=222.8
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
...+++|+.|++.++ .+..++. ...+++|++|++++| .+..++. +..+++|++|++.++.
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~~~~---~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-------------- 99 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVASIQG---IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-------------- 99 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC--------------
T ss_pred chhcccccEEEEeCC-ccccchh---hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc--------------
Confidence 346889999999985 4665543 447899999999999 7888876 8899999999996521
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccc
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLE 173 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (407)
+..+ ..+..+++|++|+++++. +...+. . ..+++|+.|++.+|.....++. +..+++|+.|++++|. +.
T Consensus 100 i~~~-~~~~~l~~L~~L~l~~n~-i~~~~~-~----~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~-~~ 168 (347)
T 4fmz_A 100 ITDI-SALQNLTNLRELYLNEDN-ISDISP-L----ANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESK-VK 168 (347)
T ss_dssp CCCC-GGGTTCTTCSEEECTTSC-CCCCGG-G----TTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSC-CC
T ss_pred ccCc-hHHcCCCcCCEEECcCCc-ccCchh-h----ccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCC-cC
Confidence 1112 246788999999999987 443322 1 4489999999999987765433 7899999999999875 33
Q ss_pred eeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeec
Q 047829 174 EVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEP 253 (407)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 253 (407)
.+..+ ..+++|+.|++.++. +..+.. +..+++|+.+++.++ .+....+ ...+++|++|++
T Consensus 169 ~~~~~-----------~~l~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~~L~l 228 (347)
T 4fmz_A 169 DVTPI-----------ANLTDLYSLSLNYNQ-IEDISP----LASLTSLHYFTAYVN-QITDITP---VANMTRLNSLKI 228 (347)
T ss_dssp CCGGG-----------GGCTTCSEEECTTSC-CCCCGG----GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEEC
T ss_pred Cchhh-----------ccCCCCCEEEccCCc-cccccc----ccCCCccceeecccC-CCCCCch---hhcCCcCCEEEc
Confidence 32221 135899999999874 443322 557899999999886 4555443 445899999999
Q ss_pred ccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccccccccc
Q 047829 254 QKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENL 333 (407)
Q Consensus 254 ~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 333 (407)
++|.... ......+++|+.|+++++ .++.++ . +..+++|+.|++++|. +..++ .+..+++|
T Consensus 229 ~~n~l~~-----------~~~~~~l~~L~~L~l~~n-~l~~~~--~---~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L 289 (347)
T 4fmz_A 229 GNNKITD-----------LSPLANLSQLTWLEIGTN-QISDIN--A---VKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQL 289 (347)
T ss_dssp CSSCCCC-----------CGGGTTCTTCCEEECCSS-CCCCCG--G---GTTCTTCCEEECCSSC-CCCCG-GGGGCTTC
T ss_pred cCCccCC-----------CcchhcCCCCCEEECCCC-ccCCCh--h---HhcCCCcCEEEccCCc-cCCCh-hhcCCCCC
Confidence 9886322 112567899999999985 555553 2 2348899999999984 55554 47889999
Q ss_pred CEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 334 ATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 334 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
++|++++| .+....+ .....+++|+.|++++|+ +..++ .+..+++|++|++++++
T Consensus 290 ~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 290 NSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR---------PLASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCG---------GGGGCTTCSEESSSCC-
T ss_pred CEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-ccccc---------Chhhhhccceeehhhhc
Confidence 99999996 4555433 345678999999999994 55543 26678999999999986
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=197.84 Aligned_cols=326 Identities=11% Similarity=0.042 Sum_probs=170.7
Q ss_pred ccccCCccEEeecCCCcccc------------------cccccc--CCCCcceeEEEeecccccccccCcchhhHHHHHH
Q 047829 40 TLEFPSLERVSVTFCPDMKT------------------FSQGIL--STPKLHKVQVIVKEEGELYHREGNLNSTIQKCYK 99 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~~l~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 99 (407)
...+++|++|+++++ .+.. +|..++ ++++|++|++.++.- .+.+|.
T Consensus 202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-------------~~~~p~ 267 (636)
T 4eco_A 202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-------------LTKLPT 267 (636)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT-------------CSSCCT
T ss_pred HhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC-------------CccChH
Confidence 446777888888877 4555 777777 777888887765211 112334
Q ss_pred hhcCCCCccEEEeccCCCcce--eccCCC-C-CccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 100 EMIGFRDIWYLQLSYFPRLKE--IWHGQA-L-PVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~l~~--~~~~~~-~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.+..+++|++|+++++..++. .+.... + ....+++|+.|.+.+|... .++..+.++++++|+.|++++|.-...+
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 445555555555555542221 111110 0 0001255555555554433 3333123455555555555554321122
Q ss_pred eccCCccc-------------cccccCCCCCc-ccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCccc
Q 047829 176 FHLEELSA-------------KEEHIGPLFPS-LSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNST 241 (407)
Q Consensus 176 ~~~~~~~~-------------~~~~~~~~~~~-L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 241 (407)
+.+..... +-..+. .+++ |+.|+++++. +..++... ....+++|+.|+++++ .+.+..|..+
T Consensus 347 p~~~~l~~L~~L~L~~N~l~~lp~~l~-~l~~~L~~L~Ls~N~-l~~lp~~~-~~~~l~~L~~L~Ls~N-~l~~~~p~~l 422 (636)
T 4eco_A 347 PAFGSEIKLASLNLAYNQITEIPANFC-GFTEQVENLSFAHNK-LKYIPNIF-DAKSVSVMSAIDFSYN-EIGSVDGKNF 422 (636)
T ss_dssp CCCEEEEEESEEECCSSEEEECCTTSE-EECTTCCEEECCSSC-CSSCCSCC-CTTCSSCEEEEECCSS-CTTTTTTCSS
T ss_pred hhhCCCCCCCEEECCCCccccccHhhh-hhcccCcEEEccCCc-Ccccchhh-hhcccCccCEEECcCC-cCCCcchhhh
Confidence 21000000 000000 1244 5566655543 22332211 1112335666666554 3333322221
Q ss_pred c------cccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccccc----ccccCCcCc
Q 047829 242 S------ILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAES----NKVFANLKS 311 (407)
Q Consensus 242 ~------~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~----~~~~~~L~~ 311 (407)
. ..+++|++|+++++..- .+... ....+++|+.|+++++ .++.++...+.. ...+++|+.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~--------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQIS-KFPKE--------LFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCC-SCCTH--------HHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCE
T ss_pred cccccccccCCCCCEEECcCCccC-cCCHH--------HHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccE
Confidence 1 02446666666665422 11110 1234788999999984 566777665432 112338999
Q ss_pred eeeccCccccccccccc--cccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEec
Q 047829 312 PEISECSKLQKLVPASW--HLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFR 389 (407)
Q Consensus 312 L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~ 389 (407)
|+++++. ++.+|..+. .+++|++|+++++ .+..+ +.. ...+++|+.|++++|..+.. +...|..+..+..++
T Consensus 493 L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~i-p~~-~~~l~~L~~L~Ls~N~~ls~--N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 493 IDLRFNK-LTKLSDDFRATTLPYLVGIDLSYN-SFSKF-PTQ-PLNSSTLKGFGIRNQRDAQG--NRTLREWPEGITLCP 566 (636)
T ss_dssp EECCSSC-CCBCCGGGSTTTCTTCCEEECCSS-CCSSC-CCG-GGGCSSCCEEECCSCBCTTC--CBCCCCCCTTGGGCS
T ss_pred EECcCCc-CCccChhhhhccCCCcCEEECCCC-CCCCc-Chh-hhcCCCCCEEECCCCccccc--CcccccChHHHhcCC
Confidence 9999875 557887776 8899999999984 56555 333 44789999999976531100 122334456777899
Q ss_pred ccceEecCCCC
Q 047829 390 KLEYLGLDCLP 400 (407)
Q Consensus 390 ~L~~L~l~~cp 400 (407)
+|++|+++++.
T Consensus 567 ~L~~L~Ls~N~ 577 (636)
T 4eco_A 567 SLTQLQIGSND 577 (636)
T ss_dssp SCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 99999999875
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=195.68 Aligned_cols=84 Identities=11% Similarity=0.024 Sum_probs=49.3
Q ss_pred cCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccce
Q 047829 306 FANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDC 385 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~ 385 (407)
+++|+.|+++++.....+|..++.+++|+.|+++++ .+....|. ....+++|+.|+++++. .+|..|..+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~-~l~~L~~L~~LdLs~N~--------l~g~ip~~l 700 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPD-EVGDLRGLNILDLSSNK--------LDGRIPQAM 700 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCG-GGGGCTTCCEEECCSSC--------CEECCCGGG
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCCh-HHhCCCCCCEEECCCCc--------ccCcCChHH
Confidence 455666677666544466666666777777777663 34433232 24456677777776662 223334555
Q ss_pred eEecccceEecCCC
Q 047829 386 IVFRKLEYLGLDCL 399 (407)
Q Consensus 386 ~~~~~L~~L~l~~c 399 (407)
..++.|++|+++++
T Consensus 701 ~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 701 SALTMLTEIDLSNN 714 (768)
T ss_dssp GGCCCCSEEECCSS
T ss_pred hCCCCCCEEECcCC
Confidence 56666777777665
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=177.73 Aligned_cols=309 Identities=13% Similarity=0.085 Sum_probs=199.4
Q ss_pred cceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccc-cccCCCCcceeEEEeecccccccccCcch
Q 047829 13 NRIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQ-GILSTPKLHKVQVIVKEEGELYHREGNLN 91 (407)
Q Consensus 13 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 91 (407)
....+++++.|++.++ .++.+|... ...+++|++|+++++ .+..++. .+..+++|++|++.++.
T Consensus 40 ~~~~l~~l~~l~l~~~-~l~~l~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~------------ 104 (390)
T 3o6n_A 40 EDITLNNQKIVTFKNS-TMRKLPAAL-LDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA------------ 104 (390)
T ss_dssp SSGGGCCCSEEEEESC-EESEECTHH-HHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC------------
T ss_pred cccccCCceEEEecCC-chhhCChhH-hcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC------------
Confidence 3446789999999985 577776543 457899999999999 5666654 67889999999996511
Q ss_pred hhHHHH-HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 92 STIQKC-YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 92 ~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
+..+ +..+..+++|++|+++++. +...+... + ..+++|+.|++++|.... ++ ...+..+++|+.|++++|.
T Consensus 105 --l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~--~~l~~L~~L~L~~n~l~~-~~-~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 105 --IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-F--HNTPKLTTLSMSNNNLER-IE-DDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp --CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCSSCCCB-CC-TTTTSSCTTCCEEECCSSC
T ss_pred --CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHH-h--cCCCCCcEEECCCCccCc-cC-hhhccCCCCCCEEECCCCc
Confidence 1112 2345678999999999886 54433322 2 347899999999886543 32 2347889999999999874
Q ss_pred ccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCce
Q 047829 171 SLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADN 250 (407)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 250 (407)
+..+. ...+++|+.|++.++. +.. +...++|+.|++.++ .+..++... +++|+.
T Consensus 177 -l~~~~------------~~~l~~L~~L~l~~n~-l~~-------~~~~~~L~~L~l~~n-~l~~~~~~~----~~~L~~ 230 (390)
T 3o6n_A 177 -LTHVD------------LSLIPSLFHANVSYNL-LST-------LAIPIAVEELDASHN-SINVVRGPV----NVELTI 230 (390)
T ss_dssp -CSBCC------------GGGCTTCSEEECCSSC-CSE-------EECCSSCSEEECCSS-CCCEEECCC----CSSCCE
T ss_pred -CCccc------------cccccccceeeccccc-ccc-------cCCCCcceEEECCCC-eeeeccccc----cccccE
Confidence 33221 0135788888887642 322 223457778887764 354443322 567777
Q ss_pred eecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccc
Q 047829 251 KEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHL 330 (407)
Q Consensus 251 L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 330 (407)
|+++++.... ......+++|+.|+++++ .+..+....+.. +++|+.|+++++ .++.+|.....+
T Consensus 231 L~l~~n~l~~-----------~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~---l~~L~~L~L~~n-~l~~~~~~~~~l 294 (390)
T 3o6n_A 231 LKLQHNNLTD-----------TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVK---MQRLERLYISNN-RLVALNLYGQPI 294 (390)
T ss_dssp EECCSSCCCC-----------CGGGGGCTTCSEEECCSS-CCCEEESGGGTT---CSSCCEEECCSS-CCCEEECSSSCC
T ss_pred EECCCCCCcc-----------cHHHcCCCCccEEECCCC-cCCCcChhHccc---cccCCEEECCCC-cCcccCcccCCC
Confidence 7777764321 112456777888888774 445544444433 677778887775 355566656667
Q ss_pred cccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 331 ENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 331 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
++|++|++++| .+..+++ . ...+++|+.|++.+|. +..+ .+..+++|++|+++++|
T Consensus 295 ~~L~~L~L~~n-~l~~~~~-~-~~~l~~L~~L~L~~N~-i~~~----------~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 295 PTLKVLDLSHN-HLLHVER-N-QPQFDRLENLYLDHNS-IVTL----------KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp TTCCEEECCSS-CCCCCGG-G-HHHHTTCSEEECCSSC-CCCC----------CCCTTCCCSEEECCSSC
T ss_pred CCCCEEECCCC-cceecCc-c-ccccCcCCEEECCCCc-ccee----------CchhhccCCEEEcCCCC
Confidence 77888888775 4554422 2 3456777788777773 3332 13456677777777654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=183.40 Aligned_cols=330 Identities=13% Similarity=0.098 Sum_probs=187.6
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
++|++|+++++ +++..+... ...+++|++|+++++.....+ +..+..+++|++|++.++ .+..
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n--------------~l~~ 93 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN--------------QFLQ 93 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC--------------TTCE
T ss_pred CccCEEEecCC-ccCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCC--------------ccCc
Confidence 67999999985 566664433 557899999999999544455 445788999999999541 1111
Q ss_pred -HHHhhcCCCCccEEEeccCCCcce-eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 97 -CYKEMIGFRDIWYLQLSYFPRLKE-IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 97 -l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
.|..+..+++|++|+++++. +.. ......+ ..+++|+.|++++|.... +.+...+..+++|++|++++|.- ..
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l-~~ 168 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCN-LDGAVLSGNFF--KPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKV-KS 168 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTT--TTCTTCCEEECCSSBCCS-CCCCGGGGGCTTCCEEECTTCCB-SC
T ss_pred cChhhccCcccCCEEeCCCCC-CCccccCcccc--cCcccCCEEECCCCccCc-cCcccccCCCCcccEEeCCCCcc-cc
Confidence 24556778999999999987 332 2222112 347899999999887644 34444578899999999998753 22
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCC------CccccCCCccEEeEecCCCCccccCcccc------
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFT------GNIIELPMFWSLTIENCPDMETFISNSTS------ 242 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~------~~~~~~~~L~~L~l~~c~~l~~~~~~~~~------ 242 (407)
+....... . ..++|+.|++.++. +..+.... .....+++|+.|+++++. +++..+..+.
T Consensus 169 ~~~~~l~~-----l--~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 169 ICEEDLLN-----F--QGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGT 239 (455)
T ss_dssp CCTTTSGG-----G--TTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTC
T ss_pred cChhhhhc-----c--ccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhcccccc
Confidence 22110000 0 01344444444332 11111000 001122344444444431 1111111000
Q ss_pred --------------------------------cccCCCceeecccccccchhhhccccccccccccccCCcceEeccccc
Q 047829 243 --------------------------------ILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLH 290 (407)
Q Consensus 243 --------------------------------~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 290 (407)
...++|+.|+++++....... ..+..+++|+.|+++++
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~Ls~n- 309 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK---------SVFSHFTDLEQLTLAQN- 309 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT---------TTTTTCTTCCEEECTTS-
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch---------hhcccCCCCCEEECCCC-
Confidence 012456666665554322111 12455678888888773
Q ss_pred ccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccch
Q 047829 291 KVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMM 370 (407)
Q Consensus 291 ~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l 370 (407)
.+..++...+.. +++|+.|+++++..-...+..+..+++|++|+++++ .+..+.+ .....+++|++|++++| .+
T Consensus 310 ~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l 383 (455)
T 3v47_A 310 EINKIDDNAFWG---LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QL 383 (455)
T ss_dssp CCCEECTTTTTT---CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CC
T ss_pred cccccChhHhcC---cccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-cc
Confidence 455554444433 777888888876533333455667788888888774 4555533 23456778888888777 44
Q ss_pred hhhhccccCCcccceeEecccceEecCCCC
Q 047829 371 EEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 371 ~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
..++ +..+..+++|++|+++++|
T Consensus 384 ~~~~-------~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 384 KSVP-------DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SCCC-------TTTTTTCTTCCEEECCSSC
T ss_pred ccCC-------HhHhccCCcccEEEccCCC
Confidence 4443 2234567788888887654
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-21 Score=196.52 Aligned_cols=336 Identities=14% Similarity=0.015 Sum_probs=161.5
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccc-cCCCCcceeEEEeecccccccccCcchhhH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGI-LSTPKLHKVQVIVKEEGELYHREGNLNSTI 94 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 94 (407)
.+++|++|+++++.--...+.......+++|++|++++|.....+|..+ .++++|++|++.++. +....
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~----------l~~~~ 167 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS----------ISGAN 167 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC----------CEEET
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc----------cCCcC
Confidence 3566666666665322223332224456667777776663333344333 556666666664311 10111
Q ss_pred HHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 95 QKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 95 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
......+..+++|++|+++++. +... .+...+++|+.|++++|.....+ +. ++++++|++|++++|.-...
T Consensus 168 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~-----~~~~~l~~L~~L~Ls~n~l~~~~-~~--l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 168 VVGWVLSDGCGELKHLAISGNK-ISGD-----VDVSRCVNLEFLDVSSNNFSTGI-PF--LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp HHHHHHTTCCTTCCEEECCSSE-EESC-----CBCTTCTTCCEEECCSSCCCSCC-CB--CTTCCSCCEEECCSSCCCSC
T ss_pred ChhhhhhccCCCCCEEECCCCc-cccc-----CCcccCCcCCEEECcCCcCCCCC-cc--cccCCCCCEEECcCCcCCCc
Confidence 1111124566777777777765 2210 11134677788888777655432 22 67777777777777643222
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecc
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 254 (407)
++.. +. .+++|++|+++++.-...++. ..+++|++|++.+| .+++..+..+...+++|++|+++
T Consensus 239 ~~~~---------l~-~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 239 FSRA---------IS-TCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp HHHH---------TT-TCSSCCEEECCSSCCEESCCC-----CCCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECC
T ss_pred ccHH---------Hh-cCCCCCEEECCCCcccCccCc-----cccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECc
Confidence 1110 11 235666666665532222111 13555666666554 23333333333334555666555
Q ss_pred cccccchhhhc--------------ccccccc--ccccccCCcceEecccccccccccccccccccccC-CcCceeeccC
Q 047829 255 KLKSEENLLVA--------------DQIQHLF--DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFA-NLKSPEISEC 317 (407)
Q Consensus 255 ~~~~l~~~~~~--------------~~~~~~~--~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~-~L~~L~l~~c 317 (407)
+|.....++.. +.+.... ...+.+++|+.|+++++.-.+.++.. + ..++ +|+.|+++++
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l---~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-L---TNLSASLLTLDLSSN 378 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-H---HHHTTTCSEEECCSS
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-H---HhhhcCCcEEEccCC
Confidence 55432211111 0000000 01233455555555553222233322 1 1133 5555555555
Q ss_pred cccccccccccc--ccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEe
Q 047829 318 SKLQKLVPASWH--LENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLG 395 (407)
Q Consensus 318 ~~l~~l~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~ 395 (407)
.....+|..+.. +++|++|++++|. +....+ .....+++|+.|++++|. +. |..+..+..+++|++|+
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~Ls~N~-l~-------~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNG-FTGKIP-PTLSNCSELVSLHLSFNY-LS-------GTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSE-EEEECC-GGGGGCTTCCEEECCSSE-EE-------SCCCGGGGGCTTCCEEE
T ss_pred CcCCCcChhhhhcccCCccEEECCCCc-cccccC-HHHhcCCCCCEEECcCCc-cc-------CcccHHHhcCCCCCEEE
Confidence 433334443333 5566666666643 332222 234466777777777772 22 22345566788889888
Q ss_pred cCCCC
Q 047829 396 LDCLP 400 (407)
Q Consensus 396 l~~cp 400 (407)
+++|.
T Consensus 449 L~~n~ 453 (768)
T 3rgz_A 449 LWLNM 453 (768)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 87653
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=186.04 Aligned_cols=112 Identities=17% Similarity=0.092 Sum_probs=53.9
Q ss_pred ccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhhhc
Q 047829 277 TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSES 355 (407)
Q Consensus 277 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 355 (407)
.+++|+.|+++++ .+..++...+.. +++|+.|+++++......+. .+..+++|++|++++| .+....+ .....
T Consensus 374 ~l~~L~~L~l~~n-~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~ 447 (606)
T 3t6q_A 374 NLSHLQSLNLSYN-EPLSLKTEAFKE---CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSE-QLFDG 447 (606)
T ss_dssp TCTTCCEEECCSC-SCEEECTTTTTT---CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCT-TTTTT
T ss_pred cCCCCCEEECCCC-cCCcCCHHHhcC---CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCH-HHHhC
Confidence 3445555555542 233333232222 55566666655543222222 2455666666666654 2333322 23345
Q ss_pred cccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 356 LVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 356 l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
+++|+.|++++|. +..... ..+..+..+++|++|++++|
T Consensus 448 l~~L~~L~L~~n~-l~~~~~----~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 448 LPALQHLNLQGNH-FPKGNI----QKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEEECTTCB-CGGGEE----CSSCGGGGCTTCCEEECTTS
T ss_pred CCCCCEEECCCCC-CCcccc----ccchhhccCCCccEEECCCC
Confidence 6666666666663 222100 01133556778888887765
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-20 Score=172.09 Aligned_cols=283 Identities=15% Similarity=0.168 Sum_probs=208.5
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
...+++|++|+++++ ++..++. ...+++|++|++++| .+..++ .+..+++|++|++.++.
T Consensus 62 ~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-------------- 121 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-------------- 121 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC--------------
T ss_pred hhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc--------------
Confidence 445889999999997 5766654 457899999999999 777776 68999999999996411
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccc
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLE 173 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (407)
+..++. +..+++|++|+++++........ + ..+++|+.|.+.+|.... +++ +..+++|+.|++++|. +.
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~---~--~~l~~L~~L~l~~~~~~~-~~~---~~~l~~L~~L~l~~n~-l~ 190 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSP---L--SNMTGLNYLTVTESKVKD-VTP---IANLTDLYSLSLNYNQ-IE 190 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGG---G--TTCTTCCEEECCSSCCCC-CGG---GGGCTTCSEEECTTSC-CC
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccc---h--hhCCCCcEEEecCCCcCC-chh---hccCCCCCEEEccCCc-cc
Confidence 111222 56789999999999976664332 1 447999999999986543 222 7899999999999874 33
Q ss_pred eeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeec
Q 047829 174 EVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEP 253 (407)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 253 (407)
.+..+ ..+++|+.|++.++. +..+.. +..+++|+.|++++| .++..++ ...+++|++|++
T Consensus 191 ~~~~~-----------~~l~~L~~L~l~~n~-l~~~~~----~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l 250 (347)
T 4fmz_A 191 DISPL-----------ASLTSLHYFTAYVNQ-ITDITP----VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEI 250 (347)
T ss_dssp CCGGG-----------GGCTTCCEEECCSSC-CCCCGG----GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEEC
T ss_pred ccccc-----------cCCCccceeecccCC-CCCCch----hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEEC
Confidence 33221 135899999998863 333221 557899999999987 4555544 446899999999
Q ss_pred ccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccccccccc
Q 047829 254 QKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENL 333 (407)
Q Consensus 254 ~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 333 (407)
++|... .+ +....+++|+.|+++++ .++.++. +..+++|+.|++++|......+..+..+++|
T Consensus 251 ~~n~l~-~~----------~~~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 251 GTNQIS-DI----------NAVKDLTKLKMLNVGSN-QISDISV-----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp CSSCCC-CC----------GGGTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred CCCccC-CC----------hhHhcCCCcCEEEccCC-ccCCChh-----hcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 988532 21 22567899999999995 5555532 2348999999999987555555667889999
Q ss_pred CEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 334 ATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 334 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
++|++++|+ +...++ ...+++|+.|++++|+
T Consensus 314 ~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 314 TTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 999999965 666533 5578999999999884
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=185.95 Aligned_cols=266 Identities=14% Similarity=0.043 Sum_probs=137.2
Q ss_pred hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCC
Q 047829 101 MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEE 180 (407)
Q Consensus 101 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 180 (407)
+..+++|++|+++++. +...+... ..+++|+.|.+.+|..... ++ ..+..+++|+.|++++|.....++..
T Consensus 274 ~~~l~~L~~L~l~~n~-l~~lp~~l----~~l~~L~~L~l~~n~l~~~-~~-~~~~~l~~L~~L~l~~n~~~~~~~~~-- 344 (606)
T 3t6q_A 274 FHCFSGLQELDLTATH-LSELPSGL----VGLSTLKKLVLSANKFENL-CQ-ISASNFPSLTHLSIKGNTKRLELGTG-- 344 (606)
T ss_dssp TTTCTTCSEEECTTSC-CSCCCSSC----CSCTTCCEEECTTCCCSBG-GG-GCGGGCTTCSEEECCSCSSCCBCCSS--
T ss_pred hccccCCCEEeccCCc-cCCCChhh----cccccCCEEECccCCcCcC-ch-hhhhccCcCCEEECCCCCcccccchh--
Confidence 5567889999999885 54443332 4478888888888765432 22 34677888888888877533222210
Q ss_pred ccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccc
Q 047829 181 LSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEE 260 (407)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 260 (407)
.+. .+++|++|+++++. +..+......+..+++|+.|+++++ .+....+.. ...+++|++|+++++....
T Consensus 345 ------~~~-~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 345 ------CLE-NLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEA-FKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp ------TTT-TCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTT-TTTCTTCSEEECTTCCEEC
T ss_pred ------hhh-ccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCC-cCCcCCHHH-hcCCccCCeEECCCCcCCC
Confidence 011 23666666666543 2221110112334556666666553 233333322 2235555555555543221
Q ss_pred hhhhc---------------ccccc-ccccccccCCcceEeccccccccc--ccc-cccccccccCCcCceeeccCcccc
Q 047829 261 NLLVA---------------DQIQH-LFDEKVTFPQLRFLELSRLHKVQH--LWK-ENAESNKVFANLKSPEISECSKLQ 321 (407)
Q Consensus 261 ~~~~~---------------~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~--l~~-~~~~~~~~~~~L~~L~l~~c~~l~ 321 (407)
...+. +.+.. .....+.+++|+.|+++++. +.. ++. ..+ ..+++|+.|++++|....
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSL---QTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGG---GGCTTCCEEECTTSCCCE
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhh---ccCCCccEEECCCCccCc
Confidence 11000 00000 01113445666666666642 222 111 112 236667777776664333
Q ss_pred ccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 322 KLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 322 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
..|..+..+++|++|+++++ .+....+ .....++.| .|++++| .+..+ .+..+..+++|++|+++++|
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~l~~l~~L-~L~L~~N-~l~~~-------~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHN-RLTSSSI-EALSHLKGI-YLNLASN-HISII-------LPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCCGGGG-GGGTTCCSC-EEECCSS-CCCCC-------CGGGHHHHHTSSEEECTTCC
T ss_pred cChhhhccccCCCEEECCCC-ccCcCCh-hHhCccccc-EEECcCC-ccccc-------CHhhcccCCCCCEEeCCCCC
Confidence 33455566677777777663 4444422 233456666 6666666 23222 23445667888888888876
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-20 Score=189.94 Aligned_cols=339 Identities=12% Similarity=0.073 Sum_probs=192.6
Q ss_pred eecccceeeeCccccccc------------------ccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEe
Q 047829 16 AFSELKFLILDYLPRLTS------------------FCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIV 77 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~------------------~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 77 (407)
.+++|+.|+++++. +.. +|.......+++|++|++++|.....+|..++++++|++|++.+
T Consensus 446 ~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 446 RLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred cCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 47899999999964 665 55442122789999999999977888999999999999999964
Q ss_pred ecccccccccC-cchhhHHHHHHhhcCCCCccEEEeccCCCcceecc--CCCCCccccCCceEEEEecCCCCCcCCccch
Q 047829 78 KEEGELYHREG-NLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH--GQALPVSFFNNLCKLVVDDCTNMSSAIPVNL 154 (407)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 154 (407)
+.. ..+ .++..+..+...+..+++|++|+++++. +..++. .. ..+++|+.|.+++|... .++ .
T Consensus 525 N~~-----lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l----~~L~~L~~L~Ls~N~l~-~lp---~ 590 (876)
T 4ecn_A 525 NRG-----ISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASL----QKMVKLGLLDCVHNKVR-HLE---A 590 (876)
T ss_dssp CTT-----SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHH----TTCTTCCEEECTTSCCC-BCC---C
T ss_pred CCC-----cccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhh----hcCCCCCEEECCCCCcc-cch---h
Confidence 210 001 2333444444344455678888877765 333222 11 33667777777766544 433 2
Q ss_pred hhccccCCeeEEccccccceeeccCCccccccccCCCCCc-ccEEeccccccccccccCC--------------------
Q 047829 155 LRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPS-LSWLRLIDLPKLKRFCNFT-------------------- 213 (407)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~i~~~~-------------------- 213 (407)
++.+++|+.|++++|. +..++.. +. .+++ |+.|+++++. +..++...
T Consensus 591 ~~~L~~L~~L~Ls~N~-l~~lp~~---------l~-~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQ-IEEIPED---------FC-AFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CCTTSEESEEECCSSC-CSCCCTT---------SC-EECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred hcCCCcceEEECcCCc-cccchHH---------Hh-hccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCC
Confidence 5666677777776653 2222210 00 1233 4444444432 22221100
Q ss_pred ------Ccc--ccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEe
Q 047829 214 ------GNI--IELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLE 285 (407)
Q Consensus 214 ------~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 285 (407)
... ...++|+.|+++++ .++.++ ..+...+++|+.|+++++..- .+.... ..........+++|+.|+
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp-~~~~~~l~~L~~L~Ls~N~L~-~ip~~~-~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYN-EIQKFP-TELFATGSPISTIILSNNLMT-SIPENS-LKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSS-CCCSCC-HHHHHTTCCCSEEECCSCCCS-CCCTTS-SSCTTSCCTTGGGCCEEE
T ss_pred ccccchhhhccccCCCcCEEEccCC-cCCccC-HHHHccCCCCCEEECCCCcCC-ccChHH-hccccccccccCCccEEE
Confidence 000 12235666666554 344332 223334667777777665322 221110 000000112344888888
Q ss_pred cccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCc-----CcccccCchhhhccccCC
Q 047829 286 LSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCH-----GLINLLTLSTSESLVNLE 360 (407)
Q Consensus 286 L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~-----~l~~~~~~~~~~~l~~L~ 360 (407)
++++ .++.+|..... ..+++|+.|+++++. +..+|..+..+++|+.|++++++ .+....+. ....+++|+
T Consensus 735 Ls~N-~L~~lp~~l~~--~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~L~ 809 (876)
T 4ecn_A 735 LRFN-KLTSLSDDFRA--TTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLI 809 (876)
T ss_dssp CCSS-CCCCCCGGGST--TTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGCSSCC
T ss_pred CCCC-CCccchHHhhh--ccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcccccccccChH-HHhcCCCCC
Confidence 8884 55666654320 137788888888764 45577777888888888887632 23333232 345688888
Q ss_pred EEEEecccchhhhhccccCCcccceeEecccceEecCCCCC
Q 047829 361 RMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPS 401 (407)
Q Consensus 361 ~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~ 401 (407)
.|++++| .+..++ ..+ +++|+.|+++++|.
T Consensus 810 ~L~Ls~N-~L~~Ip--------~~l--~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 810 QLQIGSN-DIRKVD--------EKL--TPQLYILDIADNPN 839 (876)
T ss_dssp EEECCSS-CCCBCC--------SCC--CSSSCEEECCSCTT
T ss_pred EEECCCC-CCCccC--------Hhh--cCCCCEEECCCCCC
Confidence 8888888 345554 222 36888888888874
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=190.05 Aligned_cols=344 Identities=11% Similarity=0.045 Sum_probs=207.9
Q ss_pred eecccceeeeCccccccc------------------ccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEe
Q 047829 16 AFSELKFLILDYLPRLTS------------------FCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIV 77 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~------------------~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 77 (407)
.+++|++|+++++. +.. +|.......+++|++|++++|.....+|..++++++|++|++.+
T Consensus 204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 47899999999975 666 55542112789999999999977788999999999999999964
Q ss_pred ecccccccccCcchhhHH-HHHHhhcCC------CCccEEEeccCCCcceecc--CCCCCccccCCceEEEEecCCCCCc
Q 047829 78 KEEGELYHREGNLNSTIQ-KCYKEMIGF------RDIWYLQLSYFPRLKEIWH--GQALPVSFFNNLCKLVVDDCTNMSS 148 (407)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~------~~L~~L~l~~~~~l~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~ 148 (407)
+.. + -. .+|..+..+ ++|++|+++++. +..++. .. ..+++|+.|++++|.....
T Consensus 283 n~~---------l---~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l----~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 283 NRG---------I---SGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSL----QKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp CTT---------S---CHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHH----TTCTTCCEEECCSCCCEEE
T ss_pred CCC---------C---ccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhh----ccCCCCCEEeCcCCcCccc
Confidence 210 0 01 234333332 666666666654 222221 11 2345566666655544323
Q ss_pred CCccchhhccccCCeeEEccccccceeec-cCCccc-----------cccccCC-----CCCcccEEecccccccccccc
Q 047829 149 AIPVNLLRCLNNLGWLEVRNCDSLEEVFH-LEELSA-----------KEEHIGP-----LFPSLSWLRLIDLPKLKRFCN 211 (407)
Q Consensus 149 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~-----------~~~~~~~-----~~~~L~~L~l~~~~~l~~i~~ 211 (407)
++ .+..+++|+.|++++|. +..++. +..... +. .++. .+++|+.|+++++.-...++.
T Consensus 346 ip---~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 346 LP---AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp CC---CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred hh---hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 33 23444455555554432 111111 000000 00 0111 134899999998753332211
Q ss_pred CC----CccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecc
Q 047829 212 FT----GNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELS 287 (407)
Q Consensus 212 ~~----~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 287 (407)
.. .....+++|+.|+++++ .++.++. .+...+++|++|+++++... .+.... +.........+++|+.|+++
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~-~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNN-QISKFPK-ELFSTGSPLSSINLMGNMLT-EIPKNS-LKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSS-CCCSCCT-HHHHTTCCCSEEECCSSCCS-BCCSSS-SEETTEECTTGGGCCEEECC
T ss_pred hhcccccccccCCCCCEEECcCC-ccCcCCH-HHHccCCCCCEEECCCCCCC-CcCHHH-hccccccccccCCccEEECc
Confidence 10 01114569999999985 5665544 44556899999999987643 322110 00000012234499999999
Q ss_pred cccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC-----cCcccccCchhhhccccCCEE
Q 047829 288 RLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC-----HGLINLLTLSTSESLVNLERM 362 (407)
Q Consensus 288 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c-----~~l~~~~~~~~~~~l~~L~~L 362 (407)
++ .++.++..... ..+++|+.|+++++. +..+|..+..+++|++|+++++ +.+....+. ....+++|+.|
T Consensus 497 ~N-~l~~lp~~~~~--~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~~L~~L 571 (636)
T 4eco_A 497 FN-KLTKLSDDFRA--TTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQL 571 (636)
T ss_dssp SS-CCCBCCGGGST--TTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCSSCCEE
T ss_pred CC-cCCccChhhhh--ccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccChH-HHhcCCCCCEE
Confidence 94 56677765330 138999999999975 4558888999999999999653 233333333 34578999999
Q ss_pred EEecccchhhhhccccCCcccceeEecccceEecCCCCCc
Q 047829 363 KITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSL 402 (407)
Q Consensus 363 ~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~l 402 (407)
++++| .+..++ ..+ +++|++|+++++|-.
T Consensus 572 ~Ls~N-~l~~ip--------~~~--~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 572 QIGSN-DIRKVN--------EKI--TPNISVLDIKDNPNI 600 (636)
T ss_dssp ECCSS-CCCBCC--------SCC--CTTCCEEECCSCTTC
T ss_pred ECCCC-cCCccC--------HhH--hCcCCEEECcCCCCc
Confidence 99999 445554 322 389999999999743
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=192.76 Aligned_cols=322 Identities=11% Similarity=0.019 Sum_probs=209.0
Q ss_pred ccccCCccEEeecCCCcccc------------------cccccc--CCCCcceeEEEeecccccccccCcchhhHHHHHH
Q 047829 40 TLEFPSLERVSVTFCPDMKT------------------FSQGIL--STPKLHKVQVIVKEEGELYHREGNLNSTIQKCYK 99 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~~l~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~ 99 (407)
...+++|++|+++++ .+.. +|..++ ++++|++|++.++. ..+.+|.
T Consensus 444 l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-------------l~~~iP~ 509 (876)
T 4ecn_A 444 IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-------------NMTQLPD 509 (876)
T ss_dssp GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-------------TCCSCCG
T ss_pred HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-------------CCccChH
Confidence 557899999999999 5666 898888 99999999997521 1223566
Q ss_pred hhcCCCCccEEEeccCCCcce--eccCC-CC--CccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 100 EMIGFRDIWYLQLSYFPRLKE--IWHGQ-AL--PVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~l~~--~~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
.+..+++|++|+++++..++. .+... .+ ....+++|+.|.+.+|... .++..+.++++++|+.|++++|. +..
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~ 587 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRH 587 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCB
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-ccc
Confidence 677889999999999874442 22110 00 0023579999999998766 55552358999999999999875 334
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCC-ccEEeEecCCCCccccCcccccccCCCceeec
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPM-FWSLTIENCPDMETFISNSTSILHMTADNKEP 253 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 253 (407)
++.+ . .+++|+.|+++++. +..++. .+..+++ |+.|++.++. ++.++........++|+.|++
T Consensus 588 lp~~----------~-~L~~L~~L~Ls~N~-l~~lp~---~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 588 LEAF----------G-TNVKLTDLKLDYNQ-IEEIPE---DFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp CCCC----------C-TTSEESEEECCSSC-CSCCCT---TSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEEC
T ss_pred chhh----------c-CCCcceEEECcCCc-cccchH---HHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEEC
Confidence 4311 1 35899999998874 444433 2446777 9999998864 555542211111234788888
Q ss_pred ccccccchhhhc-------------------cccccccc-cc-cccCCcceEeccccccccccccccccc----ccccCC
Q 047829 254 QKLKSEENLLVA-------------------DQIQHLFD-EK-VTFPQLRFLELSRLHKVQHLWKENAES----NKVFAN 308 (407)
Q Consensus 254 ~~~~~l~~~~~~-------------------~~~~~~~~-~~-~~l~~L~~L~L~~~~~l~~l~~~~~~~----~~~~~~ 308 (407)
+++.....+... +.+. ..+ .. ..+++|+.|+++++ .+..++...+.. ...+++
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGG
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCC
Confidence 776543221100 0011 111 11 24678888888884 566666654431 112348
Q ss_pred cCceeeccCccccccccccc--cccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCccccee
Q 047829 309 LKSPEISECSKLQKLVPASW--HLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCI 386 (407)
Q Consensus 309 L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~ 386 (407)
|+.|++++| .+..+|..+. .+++|+.|+++++ .+..+ +.. ...+++|+.|++++|+.+.. +...|..+..+.
T Consensus 730 L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~-l~~L~~L~~L~Ls~N~~ls~--N~l~~~ip~~l~ 803 (876)
T 4ecn_A 730 LTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSF-PTQ-PLNSSQLKAFGIRHQRDAEG--NRILRQWPTGIT 803 (876)
T ss_dssp CCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSC-CCG-GGGCTTCCEEECCCCBCTTC--CBCCCCCCTTGG
T ss_pred ccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCcc-chh-hhcCCCCCEEECCCCCCccc--ccccccChHHHh
Confidence 899999887 4567887776 8899999999884 55555 333 44788999999987541110 122344456777
Q ss_pred EecccceEecCCCCC
Q 047829 387 VFRKLEYLGLDCLPS 401 (407)
Q Consensus 387 ~~~~L~~L~l~~cp~ 401 (407)
.+++|++|++++|.-
T Consensus 804 ~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI 818 (876)
T ss_dssp GCSSCCEEECCSSCC
T ss_pred cCCCCCEEECCCCCC
Confidence 899999999998753
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=183.80 Aligned_cols=192 Identities=16% Similarity=0.037 Sum_probs=95.8
Q ss_pred CCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhh-hc-----
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLL-VA----- 265 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~----- 265 (407)
+++|+.|+++++. +..+......+..+++|+.|++++|. ++.++ . ....+++|+.|+++++....... ..
T Consensus 349 l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 349 LPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS-A-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEEC-C-CCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred CCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccch-h-hccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 4566666666542 22111001123345666666666643 44433 1 22336666666666654322111 00
Q ss_pred ---------ccccc-ccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCE
Q 047829 266 ---------DQIQH-LFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLAT 335 (407)
Q Consensus 266 ---------~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~ 335 (407)
+.+.. .......+++|+.|+++++.-...+....+. .+++|+.|++++|......|..+..+++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA---NTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT---TCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc---cCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 00000 1112344566666666664322212222222 2667777777776443334445666777777
Q ss_pred EEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEec-ccceEecCCCCC
Q 047829 336 LKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFR-KLEYLGLDCLPS 401 (407)
Q Consensus 336 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~-~L~~L~l~~cp~ 401 (407)
|++++| .+....+ .....+++|+.|++++| .+..++ ..+..++ +|++|+++++|-
T Consensus 502 L~Ls~N-~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~p--------~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 502 LNMSHN-NLLFLDS-SHYNQLYSLSTLDCSFN-RIETSK--------GILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECCSS-CCSCEEG-GGTTTCTTCCEEECTTS-CCCCEE--------SCGGGSCTTCCEEECCSCCC
T ss_pred EECCCC-cCCCcCH-HHccCCCcCCEEECCCC-cCcccC--------HhHhhhcccCcEEEccCCCc
Confidence 777764 4444422 23445677777777777 344444 3344555 488888877653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-20 Score=184.79 Aligned_cols=307 Identities=13% Similarity=0.081 Sum_probs=196.1
Q ss_pred eeecccceeeeCcccccccccccccccccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 15 IAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 15 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
..+.+++.|++.++ .+..+|... ...+++|++|+++++ .+..++ ..+..+++|++|++.++.
T Consensus 48 l~l~~l~~l~l~~~-~l~~lp~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-------------- 110 (597)
T 3oja_B 48 ITLNNQKIVTFKNS-TMRKLPAAL-LDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-------------- 110 (597)
T ss_dssp GGGCCCSEEEESSC-EESEECTHH-HHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC--------------
T ss_pred ccCCCceEEEeeCC-CCCCcCHHH-HccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc--------------
Confidence 35678899999885 577776553 457899999999999 566665 478889999999996511
Q ss_pred HHHHH-HhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccc
Q 047829 94 IQKCY-KEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSL 172 (407)
Q Consensus 94 ~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (407)
+..++ ..+..+++|++|+++++. +...+... | ..+++|+.|.+++|.... +++ ..+..+++|+.|++++|. +
T Consensus 111 l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~--~~l~~L~~L~Ls~N~l~~-~~~-~~~~~l~~L~~L~L~~N~-l 183 (597)
T 3oja_B 111 IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI-F--HNTPKLTTLSMSNNNLER-IED-DTFQATTSLQNLQLSSNR-L 183 (597)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-T--TTCTTCCEEECCSSCCCB-CCT-TTTTTCTTCCEEECTTSC-C
T ss_pred CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH-h--ccCCCCCEEEeeCCcCCC-CCh-hhhhcCCcCcEEECcCCC-C
Confidence 11222 235678999999999986 55443332 2 347899999999986644 333 347889999999999874 3
Q ss_pred ceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceee
Q 047829 173 EEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKE 252 (407)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 252 (407)
..++ ...+++|+.|++.++ .+.. +..+++|+.|+++++ .+..++... .++|+.|+
T Consensus 184 ~~~~------------~~~l~~L~~L~l~~n-~l~~-------l~~~~~L~~L~ls~n-~l~~~~~~~----~~~L~~L~ 238 (597)
T 3oja_B 184 THVD------------LSLIPSLFHANVSYN-LLST-------LAIPIAVEELDASHN-SINVVRGPV----NVELTILK 238 (597)
T ss_dssp SBCC------------GGGCTTCSEEECCSS-CCSE-------EECCTTCSEEECCSS-CCCEEECSC----CSCCCEEE
T ss_pred CCcC------------hhhhhhhhhhhcccC-cccc-------ccCCchhheeeccCC-ccccccccc----CCCCCEEE
Confidence 3321 113578888888764 2222 223456777777764 344444322 46777777
Q ss_pred cccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccc
Q 047829 253 PQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLEN 332 (407)
Q Consensus 253 l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 332 (407)
++++.... ...+..+++|+.|+++++ .+..+....+.. +++|+.|+++++. +..+|.....+++
T Consensus 239 L~~n~l~~-----------~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~---l~~L~~L~Ls~N~-l~~l~~~~~~l~~ 302 (597)
T 3oja_B 239 LQHNNLTD-----------TAWLLNYPGLVEVDLSYN-ELEKIMYHPFVK---MQRLERLYISNNR-LVALNLYGQPIPT 302 (597)
T ss_dssp CCSSCCCC-----------CGGGGGCTTCSEEECCSS-CCCEEESGGGTT---CSSCCEEECTTSC-CCEEECSSSCCTT
T ss_pred CCCCCCCC-----------ChhhccCCCCCEEECCCC-ccCCCCHHHhcC---ccCCCEEECCCCC-CCCCCcccccCCC
Confidence 77664321 122455677777777773 444444333333 6777777777753 5556666666777
Q ss_pred cCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 333 LATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 333 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
|++|++++| .+..++ .. ...+++|+.|++++|. +..+ .+..+++|++|+++++|
T Consensus 303 L~~L~Ls~N-~l~~i~-~~-~~~l~~L~~L~L~~N~-l~~~----------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 303 LKVLDLSHN-HLLHVE-RN-QPQFDRLENLYLDHNS-IVTL----------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCEEECCSS-CCCCCG-GG-HHHHTTCSEEECCSSC-CCCC----------CCCTTCCCSEEECCSSC
T ss_pred CcEEECCCC-CCCccC-cc-cccCCCCCEEECCCCC-CCCc----------ChhhcCCCCEEEeeCCC
Confidence 777777774 444442 22 3456777777777773 3222 13456677777777665
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-20 Score=178.87 Aligned_cols=298 Identities=18% Similarity=0.144 Sum_probs=196.1
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
++++.|+++++ +++.++... ...+++|++|+++++ .+..+ |..+..+++|++|++.+ +.+..
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~--------------n~l~~ 94 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDE-FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRS--------------NRLKL 94 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS--------------SCCCS
T ss_pred CCCcEEECCCC-ccceECHhH-ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCC--------------CcCCc
Confidence 57888888885 566665433 457889999999988 55554 66778888999998854 11222
Q ss_pred HHH-hhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 97 CYK-EMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 97 l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
++. .+..+++|++|+++++. +....... | ..+++|+.|.+.+|.... +.+ ..+..+++|+.|++++|. +..+
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~--~~l~~L~~L~l~~n~l~~-~~~-~~~~~l~~L~~L~l~~n~-l~~~ 167 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENK-IVILLDYM-F--QDLYNLKSLEVGDNDLVY-ISH-RAFSGLNSLEQLTLEKCN-LTSI 167 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSC-CCEECTTT-T--TTCTTCCEEEECCTTCCE-ECT-TSSTTCTTCCEEEEESCC-CSSC
T ss_pred cCcccccCCCCCCEEECCCCc-cccCChhH-c--cccccCCEEECCCCccce-eCh-hhccCCCCCCEEECCCCc-Cccc
Confidence 333 24567889999998876 33332222 2 347889999998876543 222 346788889999998874 3332
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
+.. .+. .+++|+.|++.++. +..+.. ..+..+++|+.|++.+|+.+..+++..+ ...+|++|++++
T Consensus 168 ~~~--------~l~-~l~~L~~L~l~~n~-i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~ 233 (477)
T 2id5_A 168 PTE--------ALS-HLHGLIVLRLRHLN-INAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITH 233 (477)
T ss_dssp CHH--------HHT-TCTTCCEEEEESCC-CCEECT--TCSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEES
T ss_pred Chh--------Hhc-ccCCCcEEeCCCCc-CcEeCh--hhcccCcccceeeCCCCccccccCcccc--cCccccEEECcC
Confidence 210 011 24788888888753 333221 2355678899999988877777655432 245888888887
Q ss_pred ccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCE
Q 047829 256 LKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLAT 335 (407)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~ 335 (407)
+..- .+.. ..+..+++|+.|+++++ .++.++...+.. +++|+.|+++++......|..+..+++|++
T Consensus 234 n~l~-~~~~--------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 234 CNLT-AVPY--------LAVRHLVYLRFLNLSYN-PISTIEGSMLHE---LLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp SCCC-SCCH--------HHHTTCTTCCEEECCSS-CCCEECTTSCTT---CTTCCEEECCSSCCSEECTTTBTTCTTCCE
T ss_pred Cccc-ccCH--------HHhcCccccCeeECCCC-cCCccChhhccc---cccCCEEECCCCccceECHHHhcCcccCCE
Confidence 7532 2211 12456788999999884 466666655544 788999999887544444556778889999
Q ss_pred EEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 336 LKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 336 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
|+++++ .+..++ ......+++|+.|++.+++
T Consensus 301 L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 301 LNVSGN-QLTTLE-ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECCSS-CCSCCC-GGGBSCGGGCCEEECCSSC
T ss_pred EECCCC-cCceeC-HhHcCCCcccCEEEccCCC
Confidence 999884 666663 3445567888988887763
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-20 Score=184.06 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=45.1
Q ss_pred cCCcCceeeccCcccc-ccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccc
Q 047829 306 FANLKSPEISECSKLQ-KLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAED 384 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~ 384 (407)
+++|+.|++++|.... .+|..+..+++|++|++++| .+...++ .....+++|+.|++++| .+..+ .+..
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~-------~~~~ 516 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHN-NLLFL-------DSSH 516 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCE-------EGGG
T ss_pred CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCC-cCCCc-------CHHH
Confidence 4555555555554322 13444555666666666654 3333322 22345566666666666 23222 1244
Q ss_pred eeEecccceEecCCCC
Q 047829 385 CIVFRKLEYLGLDCLP 400 (407)
Q Consensus 385 ~~~~~~L~~L~l~~cp 400 (407)
+..+++|++|+++++.
T Consensus 517 ~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred ccCCCcCCEEECCCCc
Confidence 5566778888777663
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-19 Score=176.76 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=97.4
Q ss_pred cCCCccEEeEecCCCCccccCcccccccCCCceeecccccccc--hhhhccccccccccccccCCcceEeccccccccc-
Q 047829 218 ELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEE--NLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQH- 294 (407)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~- 294 (407)
.+++|+.|+++++ .+++..+.. ...+++|++|+++++.... .++. ..+.+++|+.|+++++. +..
T Consensus 322 ~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~---------~~~~l~~L~~L~Ls~N~-l~~~ 389 (520)
T 2z7x_B 322 KISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQMNQLKELSKIAE---------MTTQMKSLQQLDISQNS-VSYD 389 (520)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHH---------HHTTCTTCCEEECCSSC-CBCC
T ss_pred hCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccCCccCccccchH---------HHhhCCCCCEEECCCCc-CCcc
Confidence 4566777777664 344433333 2346677777776665322 1111 14567888888888843 444
Q ss_pred ccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhh
Q 047829 295 LWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEII 374 (407)
Q Consensus 295 l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 374 (407)
++...+.. +++|+.|++++|.....+|..+. ++|++|++++| .+..+ +..+. .+++|+.|++++| .+..++
T Consensus 390 l~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~i-p~~~~-~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 390 EKKGDCSW---TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSI-PKQVV-KLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp GGGCSCCC---CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSS-CCCCCC
T ss_pred cccchhcc---CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-ccccc-chhhh-cCCCCCEEECCCC-cCCccC
Confidence 66554443 67888888888765445544332 68899999885 56655 33333 7889999999888 555554
Q ss_pred ccccCCcccceeEecccceEecCCCC
Q 047829 375 QSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 375 ~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
...+..+++|++|+++++|
T Consensus 461 -------~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 461 -------DGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -------TTTTTTCTTCCEEECCSSC
T ss_pred -------HHHhccCCcccEEECcCCC
Confidence 1125567889999998876
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=175.45 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=14.5
Q ss_pred ccCCccEEeecCCCcccccccc-ccCCCCcceeEE
Q 047829 42 EFPSLERVSVTFCPDMKTFSQG-ILSTPKLHKVQV 75 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l 75 (407)
.+++|++|+++++ .+..+|.. +..+++|++|++
T Consensus 78 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 78 NLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEEC
T ss_pred CCccCCEEECCCC-cCCccCcccccCCCCCCEEEC
Confidence 3444444444444 34444332 234444444444
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-19 Score=172.28 Aligned_cols=302 Identities=15% Similarity=0.160 Sum_probs=164.2
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.+++|+.|++.++ .++.++. ...+++|++|++++| .+..+|. +..+++|++|++.++. +.
T Consensus 44 ~l~~l~~L~l~~~-~i~~l~~---~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~--------------l~ 103 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKSIDG---VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ--------------IA 103 (466)
T ss_dssp HHHTCCEEECCSS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC--------------CC
T ss_pred HhccccEEecCCC-CCccCcc---hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc--------------cc
Confidence 3678888888875 4555542 346788888888888 6767765 7788888888885411 11
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.++. +..+++|++|+++++. +..... + ..+++|+.|++++|... .++ .+..+++|+.|++.+ .+..+
T Consensus 104 ~~~~-~~~l~~L~~L~L~~n~-l~~~~~---~--~~l~~L~~L~l~~n~l~-~~~---~~~~l~~L~~L~l~~--~~~~~ 170 (466)
T 1o6v_A 104 DITP-LANLTNLTGLTLFNNQ-ITDIDP---L--KNLTNLNRLELSSNTIS-DIS---ALSGLTSLQQLSFGN--QVTDL 170 (466)
T ss_dssp CCGG-GTTCTTCCEEECCSSC-CCCCGG---G--TTCTTCSEEEEEEEEEC-CCG---GGTTCTTCSEEEEEE--SCCCC
T ss_pred cChh-hcCCCCCCEEECCCCC-CCCChH---H--cCCCCCCEEECCCCccC-CCh---hhccCCcccEeecCC--cccCc
Confidence 1122 4566777777777764 333221 1 33677777777776533 221 245566666666642 11111
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCc----------------
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISN---------------- 239 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---------------- 239 (407)
..+ . .+++|+.|+++++. +..+. .+..+++|+.|++.+|. +....+.
T Consensus 171 ~~~----------~-~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 171 KPL----------A-NLTTLERLDISSNK-VSDIS----VLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQL 233 (466)
T ss_dssp GGG----------T-TCTTCCEEECCSSC-CCCCG----GGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred hhh----------c-cCCCCCEEECcCCc-CCCCh----hhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCc
Confidence 110 0 23455555555432 22211 12234444444444432 2222210
Q ss_pred ---ccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeecc
Q 047829 240 ---STSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISE 316 (407)
Q Consensus 240 ---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~ 316 (407)
.....+++|++|++++|.... ..+...+++|+.|+++++ .+..++. + ..+++|+.|++++
T Consensus 234 ~~~~~l~~l~~L~~L~l~~n~l~~-----------~~~~~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 234 KDIGTLASLTNLTDLDLANNQISN-----------LAPLSGLTKLTELKLGAN-QISNISP--L---AGLTALTNLELNE 296 (466)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCC-----------CGGGTTCTTCSEEECCSS-CCCCCGG--G---TTCTTCSEEECCS
T ss_pred ccchhhhcCCCCCEEECCCCcccc-----------chhhhcCCCCCEEECCCC-ccCcccc--c---cCCCccCeEEcCC
Confidence 012234555555554443211 111445667777777763 3444332 2 2367777777777
Q ss_pred CccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEec
Q 047829 317 CSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL 396 (407)
Q Consensus 317 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l 396 (407)
|. +..+++ +..+++|++|++++| .+....+ ...+++|+.|++++| .+..+. .+..+++|++|++
T Consensus 297 n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~---------~l~~l~~L~~L~l 360 (466)
T 1o6v_A 297 NQ-LEDISP-ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS---------SLANLTNINWLSA 360 (466)
T ss_dssp SC-CSCCGG-GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG---------GGTTCTTCCEEEC
T ss_pred Cc-ccCchh-hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch---------hhccCCCCCEEeC
Confidence 64 444443 567778888888775 4444422 346778888888877 343332 3456788888888
Q ss_pred CCCC
Q 047829 397 DCLP 400 (407)
Q Consensus 397 ~~cp 400 (407)
++|+
T Consensus 361 ~~n~ 364 (466)
T 1o6v_A 361 GHNQ 364 (466)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7653
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-19 Score=171.22 Aligned_cols=307 Identities=15% Similarity=0.165 Sum_probs=196.9
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
...+++|++|+++++ .++.++. ...+++|++|++++| .+..++. +..+++|++|++.++.
T Consensus 64 ~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-------------- 123 (466)
T 1o6v_A 64 VEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQ-------------- 123 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC--------------
T ss_pred hhhhcCCCEEECCCC-ccCCchh---hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCC--------------
Confidence 345788999999886 4666554 446788888888887 5666664 7778888888885421
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcceecc-CC---------------CCCccccCCceEEEEecCCCCCcCCccchhhc
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLKEIWH-GQ---------------ALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRC 157 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~---------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 157 (407)
+..++. +..+++|++|+++++. +..... .. ..+-..+++|+.|++++|... .+ ..+..
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~---~~l~~ 197 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DI---SVLAK 197 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CC---GGGGG
T ss_pred CCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CC---hhhcc
Confidence 111111 4455666666666553 221110 00 000023556666666665432 22 12566
Q ss_pred cccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCcccc
Q 047829 158 LNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFI 237 (407)
Q Consensus 158 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 237 (407)
+++|+.|++++|. +..+... ..+++|+.|++.++. +..+ ..+..+++|+.|++.+|. +...+
T Consensus 198 l~~L~~L~l~~n~-l~~~~~~-----------~~l~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n~-l~~~~ 259 (466)
T 1o6v_A 198 LTNLESLIATNNQ-ISDITPL-----------GILTNLDELSLNGNQ-LKDI----GTLASLTNLTDLDLANNQ-ISNLA 259 (466)
T ss_dssp CTTCSEEECCSSC-CCCCGGG-----------GGCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCCCG
T ss_pred CCCCCEEEecCCc-ccccccc-----------cccCCCCEEECCCCC-cccc----hhhhcCCCCCEEECCCCc-cccch
Confidence 6666666666653 2221110 125788888888763 3332 235578999999999864 55554
Q ss_pred CcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccC
Q 047829 238 SNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISEC 317 (407)
Q Consensus 238 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c 317 (407)
+ ...+++|++|+++++.... ..+...+++|+.|+++++ .+..++. +..+++|+.|++++|
T Consensus 260 ~---~~~l~~L~~L~l~~n~l~~-----------~~~~~~l~~L~~L~L~~n-~l~~~~~-----~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 260 P---LSGLTKLTELKLGANQISN-----------ISPLAGLTALTNLELNEN-QLEDISP-----ISNLKNLTYLTLYFN 319 (466)
T ss_dssp G---GTTCTTCSEEECCSSCCCC-----------CGGGTTCTTCSEEECCSS-CCSCCGG-----GGGCTTCSEEECCSS
T ss_pred h---hhcCCCCCEEECCCCccCc-----------cccccCCCccCeEEcCCC-cccCchh-----hcCCCCCCEEECcCC
Confidence 3 4458999999998875322 112566899999999995 4555543 234899999999998
Q ss_pred ccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecC
Q 047829 318 SKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 397 (407)
Q Consensus 318 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~ 397 (407)
. +..+++ +..+++|++|++++| .+... .....+++|+.|++++|. +.... ++..+++|++|+++
T Consensus 320 ~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 320 N-ISDISP-VSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHNQ-ISDLT---------PLANLTRITQLGLN 383 (466)
T ss_dssp C-CSCCGG-GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCBCG---------GGTTCTTCCEEECC
T ss_pred c-CCCchh-hccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCCc-cCccc---------hhhcCCCCCEEecc
Confidence 5 454444 678999999999986 56655 235678999999999993 43332 25678999999998
Q ss_pred CCC
Q 047829 398 CLP 400 (407)
Q Consensus 398 ~cp 400 (407)
+|+
T Consensus 384 ~n~ 386 (466)
T 1o6v_A 384 DQA 386 (466)
T ss_dssp CEE
T ss_pred CCc
Confidence 874
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=175.60 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=146.9
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.+++|+.|+++++ .++..+ ....+++|++|++++| .+..+| ++.+++|++|++.++. +.
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~---~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~--------------l~ 98 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMT---GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK--------------LT 98 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCT---TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC--------------CS
T ss_pred HcCCCCEEEccCC-CcccCh---hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC--------------Cc
Confidence 3788999999986 576664 2457899999999998 677775 7889999999996511 11
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.+ .+..+++|++|+++++. ++..+. ..+++|+.|.+.+|.... + + ++.+++|++|++++|..+..+
T Consensus 99 ~~--~~~~l~~L~~L~L~~N~-l~~l~~------~~l~~L~~L~l~~N~l~~-l-~---l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 99 NL--DVTPLTKLTYLNCDTNK-LTKLDV------SQNPLLTYLNCARNTLTE-I-D---VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp CC--CCTTCTTCCEEECCSSC-CSCCCC------TTCTTCCEEECTTSCCSC-C-C---CTTCTTCCEEECTTCSCCCCC
T ss_pred ee--ecCCCCcCCEEECCCCc-CCeecC------CCCCcCCEEECCCCccce-e-c---cccCCcCCEEECCCCCccccc
Confidence 11 15667888888888875 444332 347788888888775443 2 2 467778888888877544433
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
. + . .+++|+.|+++++ .++.++ +..+++|+.|++.++ .++.+. ...+++|++|++++
T Consensus 165 ~-~----------~-~l~~L~~L~ls~n-~l~~l~-----l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 165 D-V----------T-PQTQLTTLDCSFN-KITELD-----VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSS 221 (457)
T ss_dssp C-C----------T-TCTTCCEEECCSS-CCCCCC-----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCS
T ss_pred c-c----------c-cCCcCCEEECCCC-ccceec-----cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcC
Confidence 1 1 0 2466777777654 233331 334566666666553 344432 22356666666655
Q ss_pred ccccchhhhccccccccccccccCCcceEeccccccccccccccccccc----ccCCcCceeeccCcccccccccccccc
Q 047829 256 LKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNK----VFANLKSPEISECSKLQKLVPASWHLE 331 (407)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~~~ 331 (407)
+..-. + + .+.+++|+.|+++++ .++.++...++.+. ...+|+.+++++|+.+..+| ...++
T Consensus 222 N~l~~-i----------p-~~~l~~L~~L~l~~N-~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 222 NKLTE-I----------D-VTPLTQLTYFDCSVN-PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp SCCSC-C----------C-CTTCTTCSEEECCSS-CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCT
T ss_pred Ccccc-c----------C-ccccCCCCEEEeeCC-cCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccc
Confidence 53211 1 0 334555556655552 33333332222100 00133444444444444443 23445
Q ss_pred ccCEEEeccCcCccc
Q 047829 332 NLATLKVSKCHGLIN 346 (407)
Q Consensus 332 ~L~~L~l~~c~~l~~ 346 (407)
+|++|++++|+.+..
T Consensus 287 ~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 287 KIKELDVTHNTQLYL 301 (457)
T ss_dssp TCCCCCCTTCTTCCE
T ss_pred cCCEEECCCCcccce
Confidence 555555555544433
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-19 Score=175.35 Aligned_cols=238 Identities=17% Similarity=0.135 Sum_probs=136.4
Q ss_pred ccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccc----------ccc-ccCCCCCcccEEe
Q 047829 131 FFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSA----------KEE-HIGPLFPSLSWLR 199 (407)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~L~~L~ 199 (407)
.+++|+.|.+.+|... .++.. +..+ +|+.|++++|.. ..++... ... ... .....+++|+.|+
T Consensus 280 ~l~~L~~L~l~~~~l~-~l~~~--~~~~-~L~~L~l~~n~~-~~l~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~ 353 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIE-RVKDF--SYNF-GWQHLELVNCKF-GQFPTLK-LKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353 (570)
T ss_dssp GGTTCSEEEEESCEEC-SCCBC--CSCC-CCSEEEEESCBC-SSCCBCB-CSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred CcCcccEEEecCccch-hhhhh--hccC-CccEEeeccCcc-cccCccc-ccccCEEeCcCCccccccccccCCCCCEEe
Confidence 3577888888876543 33332 4555 777777776642 2222100 000 000 0001235555555
Q ss_pred ccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccC
Q 047829 200 LIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFP 279 (407)
Q Consensus 200 l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~ 279 (407)
++++. +..+......+..+++|+.|++.+|. +...++. ...+++|++|+++++....... ......++
T Consensus 354 l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------~~~~~~l~ 421 (570)
T 2z63_A 354 LSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSNLKQMSE--------FSVFLSLR 421 (570)
T ss_dssp CCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSEEESCTT--------SCTTTTCT
T ss_pred CcCCc-cCccccccccccccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCCccccccc--------hhhhhcCC
Confidence 55442 11110001123345666666666542 3333322 3346667777766654322111 11245678
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCccc-cccccccccccccCEEEeccCcCcccccCchhhhcccc
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKL-QKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVN 358 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 358 (407)
+|+.|+++++. +.......+.. +++|+.|++++|... ..+|..+..+++|++|++++| .+....+. ....+++
T Consensus 422 ~L~~L~l~~n~-l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~ 495 (570)
T 2z63_A 422 NLIYLDISHTH-TRVAFNGIFNG---LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSS 495 (570)
T ss_dssp TCCEEECTTSC-CEECCTTTTTT---CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTT
T ss_pred CCCEEeCcCCc-ccccchhhhhc---CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChh-hhhcccC
Confidence 99999998853 44433343333 889999999988754 357777888999999999985 45555333 3457889
Q ss_pred CCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 359 LERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 359 L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
|+.|++++| .+..++ +..+..+++|++|+++++|
T Consensus 496 L~~L~l~~n-~l~~~~-------~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 496 LQVLNMASN-QLKSVP-------DGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSS-CCSCCC-------TTTTTTCTTCCEEECCSSC
T ss_pred CCEEeCCCC-cCCCCC-------HHHhhcccCCcEEEecCCc
Confidence 999999988 444443 2345678899999998865
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=182.34 Aligned_cols=135 Identities=12% Similarity=0.092 Sum_probs=88.6
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.++|+.|+++++ .++...... ...+++|++|++++|.....+ |..+.++++|++|++.++ .+.
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N--------------~l~ 86 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS--------------KIY 86 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC--------------CCC
T ss_pred CCCcCEEECCCC-cCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC--------------cCc
Confidence 367888888885 466554433 457888888888888666666 566788888888888541 111
Q ss_pred H-HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 96 K-CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 96 ~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
. .|+.+..+++|++|+++++.-.........+ ..+++|+.|++++|.... +.+...++++++|+.|++++|.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--~~L~~L~~L~Ls~N~l~~-~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF--RNLKALTRLDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC--SSCSSCCEEEEESCCCCC-CCCCGGGGTCSSCCEEEEESSC
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccc--cccCCCCEEECCCCcccc-cccchhHhhCCCCCEEECCCCc
Confidence 1 2455677788888888887522222221112 347888888888876544 2333447788888888888763
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-19 Score=175.17 Aligned_cols=133 Identities=15% Similarity=0.144 Sum_probs=81.6
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
+++|++|+++++ +++..+... ...+++|++|++++| .+..++ ..+..+++|++|++.++ .+.
T Consensus 25 ~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n--------------~l~ 87 (549)
T 2z81_A 25 TAAMKSLDLSFN-KITYIGHGD-LRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN--------------HLS 87 (549)
T ss_dssp CTTCCEEECCSS-CCCEECSST-TSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS--------------CCC
T ss_pred CCCccEEECcCC-ccCccChhh-hhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC--------------ccC
Confidence 367888888885 466554432 457788888888888 555554 56777888888888541 111
Q ss_pred HHH-HhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 96 KCY-KEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 96 ~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
.++ ..+..+++|++|+++++. +........+ ..+++|+.|++.+|.....+++ ..+..+++|++|++++|.
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLF--PNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALS 159 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSC--TTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETT
T ss_pred ccCHHHhccCCCCcEEECCCCc-ccccchhhhh--hccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCc
Confidence 122 235667778888887775 3321111102 3467777777777765554432 235667777777777653
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-19 Score=177.90 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=86.5
Q ss_pred cCCCccEEeEecCCCCccccC--cccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 218 ELPMFWSLTIENCPDMETFIS--NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
.+++|+.|+++++. +.+..+ ......+++|+.|++++|..- .+... ......+++|+.|+++++ .++.+
T Consensus 332 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~------~~~~~~l~~L~~L~Ls~N-~l~~l 402 (549)
T 2z81_A 332 HLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKT------GEILLTLKNLTSLDISRN-TFHPM 402 (549)
T ss_dssp HCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHH------HHHGGGCTTCCEEECTTC-CCCCC
T ss_pred cCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCccc-ccccc------hhhhhcCCCCCEEECCCC-CCccC
Confidence 46788888888764 433221 111234788888888777532 11100 001344566666666663 44444
Q ss_pred cccccccccccCCcCceeeccCccccccccc------------------cccccccCEEEeccCcCcccccCchhhhccc
Q 047829 296 WKENAESNKVFANLKSPEISECSKLQKLVPA------------------SWHLENLATLKVSKCHGLINLLTLSTSESLV 357 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~------------------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~ 357 (407)
|.. ...+++|++|+++++. ++.+|.. ...+++|++|+++++ .+..++. ...++
T Consensus 403 p~~----~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~---~~~l~ 473 (549)
T 2z81_A 403 PDS----CQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD---ASLFP 473 (549)
T ss_dssp CSC----CCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC---GGGCT
T ss_pred Chh----hcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC---cccCc
Confidence 432 1124555555555543 2222211 135677777777774 5555532 23567
Q ss_pred cCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCC
Q 047829 358 NLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 358 ~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
+|+.|++++| .+..++ +..+..+++|+.|+++++|
T Consensus 474 ~L~~L~Ls~N-~l~~~~-------~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 474 VLLVMKISRN-QLKSVP-------DGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp TCCEEECCSS-CCCCCC-------TTGGGGCTTCCEEECCSSC
T ss_pred cCCEEecCCC-ccCCcC-------HHHHhcCcccCEEEecCCC
Confidence 7888887777 443332 3445677888888888876
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=168.88 Aligned_cols=315 Identities=11% Similarity=-0.003 Sum_probs=197.0
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
...+++|++|+++++.-....+... ...+++|++|++++|......|..+..+++|++|++.++ .
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--------------~ 114 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNT-FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC--------------N 114 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTT-TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS--------------C
T ss_pred hccCccccEEECcCCcccceECccc-ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC--------------C
Confidence 3457899999999975333443332 457899999999999433345778899999999999541 1
Q ss_pred HH-HHHHh--hcCCCCccEEEeccCCCccee-ccCCCCCccccCCceEEEEecCCCCCcCCccchhhcc--ccCCeeEEc
Q 047829 94 IQ-KCYKE--MIGFRDIWYLQLSYFPRLKEI-WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCL--NNLGWLEVR 167 (407)
Q Consensus 94 ~~-~l~~~--~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~ 167 (407)
+. ..+.. +..+++|++|+++++. +... +... + ..+++|+.|++++|......+ ..+..+ ++|+.++++
T Consensus 115 l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~--~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 115 LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASF-F--LNMRRFHVLDLTFNKVKSICE--EDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGG-G--GGCTTCCEEECTTCCBSCCCT--TTSGGGTTCEEEEEECT
T ss_pred CCccccCcccccCcccCCEEECCCCc-cCccCcccc-c--CCCCcccEEeCCCCcccccCh--hhhhccccccccccccc
Confidence 11 13333 6788999999999887 3322 1110 1 347899999999887654322 123333 456666666
Q ss_pred cccccceeeccCCccccccccCCCCCcccEEeccccc---------------------------cccccccC-------C
Q 047829 168 NCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLP---------------------------KLKRFCNF-------T 213 (407)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------------~l~~i~~~-------~ 213 (407)
++. +..+.............. .+++|+.|+++++. ........ .
T Consensus 189 ~n~-l~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 189 SIT-LQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp TCB-CTTCSTTCTTHHHHCCTT-TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cCc-ccccchhhcccccccccc-ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 543 222111100000000000 12455555555442 11100000 0
Q ss_pred Ccc--ccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccc
Q 047829 214 GNI--IELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHK 291 (407)
Q Consensus 214 ~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 291 (407)
..+ ...++|+.|++.++ .+....+.. ...+++|++|+++++....... ..+..+++|+.|+++++ .
T Consensus 267 ~~~~~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~Ls~N-~ 334 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKS-KIFALLKSV-FSHFTDLEQLTLAQNEINKIDD---------NAFWGLTHLLKLNLSQN-F 334 (455)
T ss_dssp TTTGGGTTSCCCEEECCSS-CCCEECTTT-TTTCTTCCEEECTTSCCCEECT---------TTTTTCTTCCEEECCSS-C
T ss_pred cccccccccCceEEEecCc-cccccchhh-cccCCCCCEEECCCCcccccCh---------hHhcCcccCCEEECCCC-c
Confidence 001 12368999999885 466665544 3458999999998886432211 12567899999999995 5
Q ss_pred cccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 292 VQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 292 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
++.++...+.. +++|+.|+++++......|..+..+++|++|++++ +.+..+++ .....+++|+.|++++++
T Consensus 335 l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 335 LGSIDSRMFEN---LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT-NQLKSVPD-GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEECGGGGTT---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred cCCcChhHhcC---cccCCEEECCCCcccccChhhccccccccEEECCC-CccccCCH-hHhccCCcccEEEccCCC
Confidence 66666555544 89999999999865444466788899999999998 56777643 445678999999998753
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=180.31 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=89.2
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCcccc-ccccccCCCCcceeEEEeecccccccccCcchh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKT-FSQGILSTPKLHKVQVIVKEEGELYHREGNLNS 92 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 92 (407)
...+++|++|+++++.....++... ...+++|++|++++| .+.. .|..+..+++|++|++.++.-. .
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~-------~--- 111 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLS-------D--- 111 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCS-------S---
T ss_pred CcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCC-------c---
Confidence 3457899999999986665554433 567899999999999 4554 4778899999999999542110 0
Q ss_pred hHHHHHHh--hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhcc--ccCCeeEEcc
Q 047829 93 TIQKCYKE--MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCL--NNLGWLEVRN 168 (407)
Q Consensus 93 ~~~~l~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~ 168 (407)
..+.. +..+++|++|+++++. +........| ..+++|+.|++++|...... + ..+..+ ++|+.|++++
T Consensus 112 ---~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~--~~L~~L~~L~Ls~N~i~~~~-~-~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 112 ---AVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSF--GKLNSLKSIDFSSNQIFLVC-E-HELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp ---CCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGG--GTCSSCCEEEEESSCCCCCC-S-GGGHHHHHCSSCCCEECC
T ss_pred ---ccccCccccccCCCCEEECCCCc-ccccccchhH--hhCCCCCEEECCCCcCCeeC-H-HHcccccCCccceEECCC
Confidence 01222 5677889999999876 3322111112 34788999999887654322 2 224444 6677777766
Q ss_pred cc
Q 047829 169 CD 170 (407)
Q Consensus 169 ~~ 170 (407)
|.
T Consensus 184 n~ 185 (844)
T 3j0a_A 184 NS 185 (844)
T ss_dssp SB
T ss_pred Cc
Confidence 53
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=163.29 Aligned_cols=282 Identities=12% Similarity=0.078 Sum_probs=204.4
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTI 94 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 94 (407)
.+++|++|+++++ .++..+... ...+++|++|+++++ .+..+| ..+..+++|++|++.+ +.+
T Consensus 67 ~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~--------------n~l 129 (390)
T 3o6n_A 67 SFRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLER--------------NDL 129 (390)
T ss_dssp HCCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS--------------SCC
T ss_pred ccccCcEEECCCC-cccccChhh-ccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCC--------------Ccc
Confidence 4689999999996 476665543 457899999999999 566665 4578899999999965 122
Q ss_pred HHHHHh-hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccc
Q 047829 95 QKCYKE-MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLE 173 (407)
Q Consensus 95 ~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (407)
..+|.. +..+++|++|+++++. +....... + ..+++|+.|.+.+|.... + + +..+++|+.++++++. +.
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~l~~n~l~~-~-~---~~~l~~L~~L~l~~n~-l~ 199 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNN-LERIEDDT-F--QATTSLQNLQLSSNRLTH-V-D---LSLIPSLFHANVSYNL-LS 199 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-T--SSCTTCCEEECCSSCCSB-C-C---GGGCTTCSEEECCSSC-CS
T ss_pred CcCCHHHhcCCCCCcEEECCCCc-cCccChhh-c--cCCCCCCEEECCCCcCCc-c-c---cccccccceeeccccc-cc
Confidence 234444 3678999999999986 44332222 2 347999999999986543 2 2 5778999999999863 33
Q ss_pred eeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeec
Q 047829 174 EVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEP 253 (407)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 253 (407)
.+. ..++|+.|++.++. +..++. ..+++|+.|++.++ .++..+ ....+++|++|++
T Consensus 200 ~~~--------------~~~~L~~L~l~~n~-l~~~~~-----~~~~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~L 255 (390)
T 3o6n_A 200 TLA--------------IPIAVEELDASHNS-INVVRG-----PVNVELTILKLQHN-NLTDTA---WLLNYPGLVEVDL 255 (390)
T ss_dssp EEE--------------CCSSCSEEECCSSC-CCEEEC-----CCCSSCCEEECCSS-CCCCCG---GGGGCTTCSEEEC
T ss_pred ccC--------------CCCcceEEECCCCe-eeeccc-----cccccccEEECCCC-CCcccH---HHcCCCCccEEEC
Confidence 332 23689999998763 444322 23578999999886 455442 3456899999999
Q ss_pred ccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccccccccc
Q 047829 254 QKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENL 333 (407)
Q Consensus 254 ~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 333 (407)
+++....... ..+..+++|+.|++++ ..++.++... ..+++|+.|+++++ .+..+|+.+..+++|
T Consensus 256 s~n~l~~~~~---------~~~~~l~~L~~L~L~~-n~l~~~~~~~----~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L 320 (390)
T 3o6n_A 256 SYNELEKIMY---------HPFVKMQRLERLYISN-NRLVALNLYG----QPIPTLKVLDLSHN-HLLHVERNQPQFDRL 320 (390)
T ss_dssp CSSCCCEEES---------GGGTTCSSCCEEECCS-SCCCEEECSS----SCCTTCCEEECCSS-CCCCCGGGHHHHTTC
T ss_pred CCCcCCCcCh---------hHccccccCCEEECCC-CcCcccCccc----CCCCCCCEEECCCC-cceecCccccccCcC
Confidence 9886432111 1256789999999999 4566666542 23889999999998 467788888889999
Q ss_pred CEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 334 ATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 334 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
++|+++++ .+..++ ...+++|+.|++++++
T Consensus 321 ~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 321 ENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred CEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence 99999985 466552 3467899999998864
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=172.59 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=93.1
Q ss_pred cCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccc-cc
Q 047829 218 ELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQH-LW 296 (407)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-l~ 296 (407)
.+++|+.|+++++ .+++..+.. ...+++|+.|+++++..- .+.. .......+++|+.|+++++. ++. ++
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~-~~~~------~~~~~~~l~~L~~L~l~~N~-l~~~~~ 420 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVFQG-CSTLKRLQTLILQRNGLK-NFFK------VALMTKNMSSLETLDVSLNS-LNSHAY 420 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTTTT-CCSCSSCCEEECCSSCCC-BTTH------HHHTTTTCTTCCEEECTTSC-CBSCCS
T ss_pred CCCCceEEECCCC-ccccchhhh-hcccCCCCEEECCCCCcC-Cccc------chhhhcCCCCCCEEECCCCc-CCCccC
Confidence 4556666666654 344433322 234666677766665322 1100 00114567788888888743 443 66
Q ss_pred ccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhcc
Q 047829 297 KENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQS 376 (407)
Q Consensus 297 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 376 (407)
...+.. +++|+.|+++++.-...+|..+. ++|++|+++++ .+..++ ..+. .+++|+.|+++++ .+..++
T Consensus 421 ~~~~~~---l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip-~~~~-~l~~L~~L~L~~N-~l~~l~-- 489 (562)
T 3a79_B 421 DRTCAW---AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIP-KDVT-HLQALQELNVASN-QLKSVP-- 489 (562)
T ss_dssp SCCCCC---CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCC-TTTT-SSCCCSEEECCSS-CCCCCC--
T ss_pred hhhhcC---cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccC-hhhc-CCCCCCEEECCCC-CCCCCC--
Confidence 554443 67888888887764344443322 68888888874 666653 3333 7888888888887 455554
Q ss_pred ccCCcccceeEecccceEecCCCC
Q 047829 377 QVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 377 ~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
...+..+++|++|+++++|
T Consensus 490 -----~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 490 -----DGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp -----TTSTTTCTTCCCEECCSCC
T ss_pred -----HHHHhcCCCCCEEEecCCC
Confidence 1125567888888888876
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.5e-19 Score=176.64 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=63.1
Q ss_pred ccccCCcceEecccccccccc-cccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHL-WKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
...+++|+.|+++++. +... +...+. .+++|+.|++++|......|..+..+++|++|++++|.......+ ...
T Consensus 392 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~ 466 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSN-LKQMSEFSVFL---SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIF 466 (570)
T ss_dssp EETCTTCCEEECTTSE-EESCTTSCTTT---TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCC
T ss_pred ccccCCCCEEEccCCc-cccccchhhhh---cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-hhh
Confidence 3445666666666532 2222 212222 266777777777654444555566677777777777542211112 234
Q ss_pred hccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 354 ESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 354 ~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
..+++|+.|++++| .+..+ .+..+..+++|++|++++|
T Consensus 467 ~~l~~L~~L~l~~n-~l~~~-------~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 467 TELRNLTFLDLSQC-QLEQL-------SPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTCTTCCEEECTTS-CCCEE-------CTTTTTTCTTCCEEECCSS
T ss_pred hcccCCCEEECCCC-ccccC-------ChhhhhcccCCCEEeCCCC
Confidence 45677777777777 33333 1244556788888887765
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=170.51 Aligned_cols=130 Identities=13% Similarity=0.086 Sum_probs=76.0
Q ss_pred ccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccc--cccccccccCCcCceeeccCcccc
Q 047829 244 LHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWK--ENAESNKVFANLKSPEISECSKLQ 321 (407)
Q Consensus 244 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~--~~~~~~~~~~~L~~L~l~~c~~l~ 321 (407)
.+++|++|+++++......+ ...+.+++|+.|+++++ .++.++. ..+ ..+++|+.|+++++....
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~---~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVF---------ENCGHLTELETLILQMN-QLKELSKIAEMT---TQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTT---------TTCCCCSSCCEEECCSS-CCCBHHHHHHHH---TTCTTCCEEECCSSCCBC
T ss_pred hCCcccEEEeECCccChhhh---------hhhccCCCCCEEEccCC-ccCccccchHHH---hhCCCCCEEECCCCcCCc
Confidence 35666666666654322111 12456777888888774 3443221 112 236778888888765433
Q ss_pred ccccc-cccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 322 KLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 322 ~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
.+|.. +..+++|++|++++|. +....+..+ .++|+.|++++| .+..++ ..+..+++|++|+++++
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l---~~~L~~L~Ls~N-~l~~ip--------~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCL---PPRIKVLDLHSN-KIKSIP--------KQVVKLEALQELNVASN 454 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSC-CCGGGGGSC---CTTCCEEECCSS-CCCCCC--------GGGGGCTTCCEEECCSS
T ss_pred ccccchhccCccCCEEECcCCC-CCcchhhhh---cccCCEEECCCC-cccccc--------hhhhcCCCCCEEECCCC
Confidence 36643 5567788888887753 332212111 157888888887 455544 34447888999988775
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-18 Score=174.14 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=92.6
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCc--cccCcccccccCCCceeecccccccchhhhcccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDME--TFISNSTSILHMTADNKEPQKLKSEENLLVADQIQH 270 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 270 (407)
++|++|+++++. +..+. ...+..+++|+.|++.++. +. +..+.. ...+++|+.|+++++..- .+.+
T Consensus 430 ~~L~~L~Ls~n~-l~~~~--~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~-~~~l~~L~~L~Ls~N~l~-~i~~------ 497 (680)
T 1ziw_A 430 ENIFEIYLSYNK-YLQLT--RNSFALVPSLQRLMLRRVA-LKNVDSSPSP-FQPLRNLTILDLSNNNIA-NIND------ 497 (680)
T ss_dssp TTCCEEECCSCS-EEECC--TTTTTTCTTCCEEECTTSC-CBCTTCSSCT-TTTCTTCCEEECCSSCCC-CCCT------
T ss_pred ccccEEecCCCC-cceeC--hhhhhcCcccccchhcccc-ccccccCCcc-cccCCCCCEEECCCCCCC-cCCh------
Confidence 555555555543 21111 1123345556666655532 11 111211 233566666666555321 1111
Q ss_pred ccccccccCCcceEecccccccccccccccc-----cccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCc
Q 047829 271 LFDEKVTFPQLRFLELSRLHKVQHLWKENAE-----SNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGL 344 (407)
Q Consensus 271 ~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~-----~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l 344 (407)
.....+++|+.|+++++ .++.++...++ .+..+++|+.|+++++ .+..+|. .+..+++|++|++++ +.+
T Consensus 498 --~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l 572 (680)
T 1ziw_A 498 --DMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGL-NNL 572 (680)
T ss_dssp --TTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCC
T ss_pred --hhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCC-CCC
Confidence 11445667777777763 34444322211 1223667777777765 3455554 356677777777766 456
Q ss_pred ccccCchhhhccccCCEEEEecccchhhhhccccCCccccee-EecccceEecCCCC
Q 047829 345 INLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCI-VFRKLEYLGLDCLP 400 (407)
Q Consensus 345 ~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~-~~~~L~~L~l~~cp 400 (407)
..++ ......+++|+.|+++++ .+..++ +..+. .+++|++++++++|
T Consensus 573 ~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~-------~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 573 NTLP-ASVFNNQVSLKSLNLQKN-LITSVE-------KKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CCCC-TTTTTTCTTCCEEECTTS-CCCBCC-------HHHHHHHHTTCSEEECTTCC
T ss_pred CcCC-HhHhCCCCCCCEEECCCC-cCCccC-------hhHhcccccccCEEEccCCC
Confidence 6553 334456677777777776 333332 11222 46677777777655
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=168.48 Aligned_cols=256 Identities=15% Similarity=0.125 Sum_probs=183.0
Q ss_pred ccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcc
Q 047829 40 TLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLK 119 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 119 (407)
...+++|++|+++++ .+..+| .+..+++|++|++.++. +..+ .+..+++|++|+++++. +.
T Consensus 38 ~~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~--------------l~~~--~~~~l~~L~~L~Ls~N~-l~ 98 (457)
T 3bz5_A 38 EEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNN--------------ITTL--DLSQNTNLTYLACDSNK-LT 98 (457)
T ss_dssp HHHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSC--------------CSCC--CCTTCTTCSEEECCSSC-CS
T ss_pred hhHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCc--------------CCeE--ccccCCCCCEEECcCCC-Cc
Confidence 346899999999999 788887 78999999999996521 1112 25678999999999987 55
Q ss_pred eeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEe
Q 047829 120 EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLR 199 (407)
Q Consensus 120 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 199 (407)
..+ + ..+++|+.|++++|.... + + ++.+++|++|++++|. ++.+. + ..+++|+.|+
T Consensus 99 ~~~----~--~~l~~L~~L~L~~N~l~~-l-~---~~~l~~L~~L~l~~N~-l~~l~-----------l-~~l~~L~~L~ 154 (457)
T 3bz5_A 99 NLD----V--TPLTKLTYLNCDTNKLTK-L-D---VSQNPLLTYLNCARNT-LTEID-----------V-SHNTQLTELD 154 (457)
T ss_dssp CCC----C--TTCTTCCEEECCSSCCSC-C-C---CTTCTTCCEEECTTSC-CSCCC-----------C-TTCTTCCEEE
T ss_pred eee----c--CCCCcCCEEECCCCcCCe-e-c---CCCCCcCCEEECCCCc-cceec-----------c-ccCCcCCEEE
Confidence 433 2 458999999999986543 3 2 6889999999999874 33321 1 1358999999
Q ss_pred ccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccC
Q 047829 200 LIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFP 279 (407)
Q Consensus 200 l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~ 279 (407)
+.++..+..+ .+..+++|+.|+++++ ++++++ ...+++|+.|+++++..-. + ..+.++
T Consensus 155 l~~n~~~~~~-----~~~~l~~L~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N~l~~-~-----------~l~~l~ 212 (457)
T 3bz5_A 155 CHLNKKITKL-----DVTPQTQLTTLDCSFN-KITELD----VSQNKLLNRLNCDTNNITK-L-----------DLNQNI 212 (457)
T ss_dssp CTTCSCCCCC-----CCTTCTTCCEEECCSS-CCCCCC----CTTCTTCCEEECCSSCCSC-C-----------CCTTCT
T ss_pred CCCCCccccc-----ccccCCcCCEEECCCC-ccceec----cccCCCCCEEECcCCcCCe-e-----------ccccCC
Confidence 9998766654 2456899999999886 576664 2358999999998875322 1 256789
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEE----------EeccCcCcccccC
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATL----------KVSKCHGLINLLT 349 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L----------~l~~c~~l~~~~~ 349 (407)
+|+.|+++++ .++.++ + ..+++|+.|+++++. ++.+| ...+++|+.| ++++|..+..++
T Consensus 213 ~L~~L~Ls~N-~l~~ip---~---~~l~~L~~L~l~~N~-l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~- 281 (457)
T 3bz5_A 213 QLTFLDCSSN-KLTEID---V---TPLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ- 281 (457)
T ss_dssp TCSEEECCSS-CCSCCC---C---TTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-
T ss_pred CCCEEECcCC-cccccC---c---cccCCCCEEEeeCCc-CCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-
Confidence 9999999994 566665 2 238899999999874 55554 3455555555 455444333332
Q ss_pred chhhhccccCCEEEEecccchhhhh
Q 047829 350 LSTSESLVNLERMKITDCKMMEEII 374 (407)
Q Consensus 350 ~~~~~~l~~L~~L~i~~c~~l~~~~ 374 (407)
...+++|+.|++++|..+..++
T Consensus 282 ---~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 282 ---AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp ---CTTCTTCCCCCCTTCTTCCEEE
T ss_pred ---ccccccCCEEECCCCcccceec
Confidence 2356888999998887655554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=174.87 Aligned_cols=106 Identities=13% Similarity=-0.002 Sum_probs=54.4
Q ss_pred ccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccc-----ccc
Q 047829 222 FWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQ-----HLW 296 (407)
Q Consensus 222 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~-----~l~ 296 (407)
|+.|+++++ .++..++.. ...+++|++|+++++...... ...+..+++|+.|+++++..-. .++
T Consensus 250 L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~---------~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 250 LTMLDLSYN-NLNVVGNDS-FAWLPQLEYFFLEYNNIQHLF---------SHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp CCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSCCBSEEC---------TTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred CCEEECCCC-CcCccCccc-ccCcccccEeeCCCCccCccC---------hhhhcCCCCccEEeccchhhhccccccccc
Confidence 666666554 244443332 233566666666555322111 1124456677777776532111 111
Q ss_pred ---ccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 297 ---KENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 297 ---~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
...+ ..+++|+.|+++++.-....+..+..+++|++|++++|
T Consensus 319 ~i~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 319 KIDDFSF---QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp EECTTTT---TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred ccChhhc---ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 1122 23677888888776533333344566777888877765
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-17 Score=153.22 Aligned_cols=291 Identities=12% Similarity=0.051 Sum_probs=141.8
Q ss_pred ccceeeeCcccccccccccccccccCCccEEeecCCCccccccc-cccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 19 ELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQ-GILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 19 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
+++.+++++. .++.+|... .+.|++|+++++ .+..++. .+..+++|++|++.++. +..+
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~----~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~--------------l~~~ 91 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDL----PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK--------------ISKI 91 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSC----CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC--------------CCCB
T ss_pred CCeEEEecCC-CccccCccC----CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc--------------CCee
Confidence 4555555553 344444331 256666666666 4555543 45566666666664310 1111
Q ss_pred -HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 98 -YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 98 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
|..+..+++|++|+++++. ++. ++...+++|+.|.+.+|.... + +...+.++++|+.|++++|.....
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~-l~~------l~~~~~~~L~~L~l~~n~l~~-~-~~~~~~~l~~L~~L~l~~n~l~~~-- 160 (330)
T 1xku_A 92 SPGAFAPLVKLERLYLSKNQ-LKE------LPEKMPKTLQELRVHENEITK-V-RKSVFNGLNQMIVVELGTNPLKSS-- 160 (330)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CSB------CCSSCCTTCCEEECCSSCCCB-B-CHHHHTTCTTCCEEECCSSCCCGG--
T ss_pred CHHHhcCCCCCCEEECCCCc-CCc------cChhhcccccEEECCCCcccc-c-CHhHhcCCccccEEECCCCcCCcc--
Confidence 3334455666666666554 322 121223556666666554332 2 223345556666666655431100
Q ss_pred ccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccc
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKL 256 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 256 (407)
......+..+++|+.|++.++ .++.++... .++|++|+++++
T Consensus 161 ---------------------------------~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~----~~~L~~L~l~~n 202 (330)
T 1xku_A 161 ---------------------------------GIENGAFQGMKKLSYIRIADT-NITTIPQGL----PPSLTELHLDGN 202 (330)
T ss_dssp ---------------------------------GBCTTGGGGCTTCCEEECCSS-CCCSCCSSC----CTTCSEEECTTS
T ss_pred ---------------------------------CcChhhccCCCCcCEEECCCC-ccccCCccc----cccCCEEECCCC
Confidence 000111233444444444443 233332211 245555555554
Q ss_pred cccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEE
Q 047829 257 KSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATL 336 (407)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L 336 (407)
.... +. ...+..+++|+.|+++++ .++.++...+.. +++|+.|+++++ .+..+|.++..+++|++|
T Consensus 203 ~l~~-~~--------~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~---l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 203 KITK-VD--------AASLKGLNNLAKLGLSFN-SISAVDNGSLAN---TPHLRELHLNNN-KLVKVPGGLADHKYIQVV 268 (330)
T ss_dssp CCCE-EC--------TGGGTTCTTCCEEECCSS-CCCEECTTTGGG---STTCCEEECCSS-CCSSCCTTTTTCSSCCEE
T ss_pred cCCc-cC--------HHHhcCCCCCCEEECCCC-cCceeChhhccC---CCCCCEEECCCC-cCccCChhhccCCCcCEE
Confidence 3211 10 011344566777777663 444554443333 677777777776 355677777777888888
Q ss_pred EeccCcCcccccCchhh-----hccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 337 KVSKCHGLINLLTLSTS-----ESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 337 ~l~~c~~l~~~~~~~~~-----~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
++++ +.+..++...+. ...+.++.+++.+++..... ..+.....++.++.++++++
T Consensus 269 ~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~------i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 269 YLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE------IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG------SCGGGGTTCCCGGGEEC---
T ss_pred ECCC-CcCCccChhhcCCcccccccccccceEeecCcccccc------cCccccccccceeEEEeccc
Confidence 8877 345555332221 12356777777776421111 01233445666777776653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=165.33 Aligned_cols=281 Identities=12% Similarity=0.078 Sum_probs=202.9
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCcccccccc-ccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQG-ILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
+++|++|+++++ .+...+... ...+++|++|++++| .+..+|.. ++.+++|++|++.++ .+.
T Consensus 74 l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n--------------~l~ 136 (597)
T 3oja_B 74 FRQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN--------------DLS 136 (597)
T ss_dssp CCCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS--------------CCC
T ss_pred CCCCcEEECCCC-CCCCCChHH-hcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCC--------------CCC
Confidence 689999999996 477665543 457899999999999 57666654 588999999999651 222
Q ss_pred HHHHh-hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 96 KCYKE-MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 96 ~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
.+|.. +..+++|++|+++++. +....... + ..+++|+.|.+++|.... + + +..+++|+.|++++|. +..
T Consensus 137 ~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~--~~l~~L~~L~L~~N~l~~-~-~---~~~l~~L~~L~l~~n~-l~~ 206 (597)
T 3oja_B 137 SLPRGIFHNTPKLTTLSMSNNN-LERIEDDT-F--QATTSLQNLQLSSNRLTH-V-D---LSLIPSLFHANVSYNL-LST 206 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCBCCTTT-T--TTCTTCCEEECTTSCCSB-C-C---GGGCTTCSEEECCSSC-CSE
T ss_pred CCCHHHhccCCCCCEEEeeCCc-CCCCChhh-h--hcCCcCcEEECcCCCCCC-c-C---hhhhhhhhhhhcccCc-ccc
Confidence 34444 4678999999999986 44433222 2 347999999999986543 2 2 4778999999999863 333
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecc
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 254 (407)
+. ..++|+.|+++++. +..++.. .+++|+.|++.++ .+++. .....+++|+.|+++
T Consensus 207 l~--------------~~~~L~~L~ls~n~-l~~~~~~-----~~~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 207 LA--------------IPIAVEELDASHNS-INVVRGP-----VNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLS 262 (597)
T ss_dssp EE--------------CCTTCSEEECCSSC-CCEEECS-----CCSCCCEEECCSS-CCCCC---GGGGGCTTCSEEECC
T ss_pred cc--------------CCchhheeeccCCc-ccccccc-----cCCCCCEEECCCC-CCCCC---hhhccCCCCCEEECC
Confidence 22 23689999998764 4443322 2478999999886 45543 234568999999998
Q ss_pred cccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccC
Q 047829 255 KLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLA 334 (407)
Q Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~ 334 (407)
++......+ ..++.+++|+.|++++ +.++.++... ..+++|+.|++++|. +..+|..+..+++|+
T Consensus 263 ~N~l~~~~~---------~~~~~l~~L~~L~Ls~-N~l~~l~~~~----~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 263 YNELEKIMY---------HPFVKMQRLERLYISN-NRLVALNLYG----QPIPTLKVLDLSHNH-LLHVERNQPQFDRLE 327 (597)
T ss_dssp SSCCCEEES---------GGGTTCSSCCEEECTT-SCCCEEECSS----SCCTTCCEEECCSSC-CCCCGGGHHHHTTCS
T ss_pred CCccCCCCH---------HHhcCccCCCEEECCC-CCCCCCCccc----ccCCCCcEEECCCCC-CCccCcccccCCCCC
Confidence 876432211 1266789999999998 4566666542 237899999999875 567888888899999
Q ss_pred EEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 335 TLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 335 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+|++++| .+..++ ...+++|+.|++++++
T Consensus 328 ~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 328 NLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred EEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 9999985 455542 3457899999998864
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=153.25 Aligned_cols=113 Identities=8% Similarity=0.088 Sum_probs=65.3
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
+..+++|+.|++++ ..++.++...+.. +++|+.|+++++ .+..+|.++..+++|++|++++ +.+..+++..+..
T Consensus 213 l~~l~~L~~L~L~~-N~l~~~~~~~~~~---l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 213 LLRYSKLYRLGLGH-NQIRMIENGSLSF---LPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCP 286 (332)
T ss_dssp STTCTTCSCCBCCS-SCCCCCCTTGGGG---CTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSC
T ss_pred hcCCCCCCEEECCC-CcCCcCChhHhhC---CCCCCEEECCCC-cCeecChhhhcCccCCEEECCC-CCCCccChhHccc
Confidence 44566777777776 3455555444433 677888888776 3557777777778888888877 4555553332221
Q ss_pred c-----cccCCEEEEecccchh-hhhccccCCcccceeEecccceEecCCCC
Q 047829 355 S-----LVNLERMKITDCKMME-EIIQSQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 355 ~-----l~~L~~L~i~~c~~l~-~~~~~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
. .+.|+.+++.+++... .+ .+.....+++|+.++++++.
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~-------~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEV-------QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGS-------CGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCccccccc-------Ccccccccchhhhhhccccc
Confidence 1 3567778887775321 11 12334556777777777653
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=154.10 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=69.2
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+++++.|+++++ +++.+|.. ...+++|++|+++++ .+..+|..++.+++|++|++.++ .+..
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~--l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n--------------~l~~ 141 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQ--AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN--------------PLRA 141 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSC--GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC--------------CCCC
T ss_pred ccceeEEEccCC-CchhcChh--hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC--------------cccc
Confidence 356666666663 45555443 334666777777766 45566666666667777766531 1112
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCC---CC--ccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQA---LP--VSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
+|..+..+++|++|++++|......+.... +. -..+++|+.|++.+|... .++.. +..+++|++|++++|
T Consensus 142 lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~--l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS--IANLQNLKSLKIRNS 216 (328)
T ss_dssp CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG--GGGCTTCCEEEEESS
T ss_pred CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh--hcCCCCCCEEEccCC
Confidence 444455566666666666554433222110 00 012555666666655433 33322 555566666666554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=151.94 Aligned_cols=230 Identities=19% Similarity=0.179 Sum_probs=112.1
Q ss_pred cCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceec
Q 047829 43 FPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIW 122 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 122 (407)
.+.++.|+++++ .+..+|..++++++|++|++.++ .+..+|..+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n--------------~l~~lp~~~--------------------- 123 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA--------------GLMELPDTM--------------------- 123 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESS--------------CCCCCCSCG---------------------
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCC--------------CccchhHHH---------------------
Confidence 478888888887 67788887888888888888541 111122222
Q ss_pred cCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccc
Q 047829 123 HGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLID 202 (407)
Q Consensus 123 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (407)
..+++|+.|++++|... .++.. +.++++|++|++++|+.+..++.........+.+. .+++|+.|++++
T Consensus 124 -------~~l~~L~~L~Ls~n~l~-~lp~~--l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~-~l~~L~~L~L~~ 192 (328)
T 4fcg_A 124 -------QQFAGLETLTLARNPLR-ALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQ-GLVNLQSLRLEW 192 (328)
T ss_dssp -------GGGTTCSEEEEESCCCC-CCCGG--GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE-ESTTCCEEEEEE
T ss_pred -------hccCCCCEEECCCCccc-cCcHH--HhcCcCCCEEECCCCCCccccChhHhhccchhhhc-cCCCCCEEECcC
Confidence 23566666666665443 33322 56667777777776654444332110000000000 124444444444
Q ss_pred cccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcc
Q 047829 203 LPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLR 282 (407)
Q Consensus 203 ~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~ 282 (407)
+ .+..++. .+..+++|+.|+++++ .++++++ . +..+++|+
T Consensus 193 n-~l~~lp~---~l~~l~~L~~L~L~~N-~l~~l~~-~----------------------------------l~~l~~L~ 232 (328)
T 4fcg_A 193 T-GIRSLPA---SIANLQNLKSLKIRNS-PLSALGP-A----------------------------------IHHLPKLE 232 (328)
T ss_dssp E-CCCCCCG---GGGGCTTCCEEEEESS-CCCCCCG-G----------------------------------GGGCTTCC
T ss_pred C-CcCcchH---hhcCCCCCCEEEccCC-CCCcCch-h----------------------------------hccCCCCC
Confidence 3 2222211 1233445555555443 2333222 1 33344555
Q ss_pred eEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEE
Q 047829 283 FLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERM 362 (407)
Q Consensus 283 ~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 362 (407)
.|+++++...+.++.. +..+++|+.|++++|.....+|..+..+++|++|++++|+.+..++ .....+++|+.+
T Consensus 233 ~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP--~~l~~L~~L~~l 306 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPI----FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCII 306 (328)
T ss_dssp EEECTTCTTCCBCCCC----TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC--GGGGGSCTTCEE
T ss_pred EEECcCCcchhhhHHH----hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc--HHHhhccCceEE
Confidence 5555544444333332 1124555555555555555555555555555555555555544442 123445555555
Q ss_pred EEe
Q 047829 363 KIT 365 (407)
Q Consensus 363 ~i~ 365 (407)
.+.
T Consensus 307 ~l~ 309 (328)
T 4fcg_A 307 LVP 309 (328)
T ss_dssp ECC
T ss_pred eCC
Confidence 544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-19 Score=178.52 Aligned_cols=217 Identities=12% Similarity=-0.020 Sum_probs=116.7
Q ss_pred hhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEec-----
Q 047829 155 LRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIEN----- 229 (407)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~----- 229 (407)
+..+++|++|++++|. +..... .. +...+++|++|++.++..-..+ ......+++|++|++.+
T Consensus 289 ~~~~~~L~~L~Ls~~~-l~~~~~-------~~-~~~~~~~L~~L~L~~~~~~~~l---~~~~~~~~~L~~L~L~~g~~~~ 356 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYAL-LETEDH-------CT-LIQKCPNLEVLETRNVIGDRGL---EVLAQYCKQLKRLRIERGADEQ 356 (592)
T ss_dssp GGGGGGCCEEEETTCC-CCHHHH-------HH-HHTTCTTCCEEEEEGGGHHHHH---HHHHHHCTTCCEEEEECCCCSS
T ss_pred HhhcCCCcEEecCCCc-CCHHHH-------HH-HHHhCcCCCEEeccCccCHHHH---HHHHHhCCCCCEEEeecCcccc
Confidence 5566777777777765 221110 00 0012467777777632111110 00123467788888885
Q ss_pred -----CCCCccccCcccccccCCCceeecccccccchhhhccccccccccccc-cCCcceEeccc---cccccccccc-c
Q 047829 230 -----CPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVT-FPQLRFLELSR---LHKVQHLWKE-N 299 (407)
Q Consensus 230 -----c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~---~~~l~~l~~~-~ 299 (407)
|+.++......+...+++|++|.+ .|..+++.. ....+. +++|+.|+++. ++.++..|.+ +
T Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~--------~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 357 GMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNES--------LESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp TTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHH--------HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred ccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHH--------HHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 777665544444556788888888 444443311 111333 77888888873 4455544321 1
Q ss_pred cc-cccccCCcCceeeccCcc-ccc-ccccc-ccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhc
Q 047829 300 AE-SNKVFANLKSPEISECSK-LQK-LVPAS-WHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQ 375 (407)
Q Consensus 300 ~~-~~~~~~~L~~L~l~~c~~-l~~-l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 375 (407)
+. ....+++|+.|+++.|.. +.. .+..+ ..+++|++|++++|. +.+.....+...+++|+.|++++|+ +....
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~- 504 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERA- 504 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHH-
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHH-
Confidence 11 022377888888876553 221 11112 346788888888654 4433223345567888888888886 32211
Q ss_pred cccCCcccceeEecccceEecCCCC
Q 047829 376 SQVGEEAEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 376 ~~~g~~~~~~~~~~~L~~L~l~~cp 400 (407)
.+.....+++|++|++++|+
T Consensus 505 -----~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 505 -----IAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -----HHHHHHHCSSCCEEEEESCB
T ss_pred -----HHHHHHhcCccCeeECcCCc
Confidence 00122456788888888776
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-19 Score=177.06 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=65.0
Q ss_pred ccCCcceEecc-----ccccccccccc-cccc-ccccCCcCceeeccCccccc-cccccc-cccccCEEEeccCcCcccc
Q 047829 277 TFPQLRFLELS-----RLHKVQHLWKE-NAES-NKVFANLKSPEISECSKLQK-LVPASW-HLENLATLKVSKCHGLINL 347 (407)
Q Consensus 277 ~l~~L~~L~L~-----~~~~l~~l~~~-~~~~-~~~~~~L~~L~l~~c~~l~~-l~~~~~-~~~~L~~L~l~~c~~l~~~ 347 (407)
.+++|+.|+++ +|..++..+.. ++.. ...+++|+.|++.+ .+.. .+..+. .+++|++|++++|. +.+.
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~ 471 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL 471 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHH
Confidence 36788888887 45555543321 1110 12367788888865 3332 111222 36788888887764 4433
Q ss_pred cCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCCCC
Q 047829 348 LTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPS 401 (407)
Q Consensus 348 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~ 401 (407)
....+...+++|+.|++++|+.-.... ......+++|++|++++|+.
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n~~~~~~~-------~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDCPFGDKAL-------LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCSCCHHHH-------HHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHhcCCCcCEEECcCCCCcHHHH-------HHHHHhCCCCCEEeeeCCCC
Confidence 233334567888888888885421111 01223567888888888864
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-17 Score=164.16 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=82.1
Q ss_pred ccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccc--cccccccccCCcCceeeccCcccc
Q 047829 244 LHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWK--ENAESNKVFANLKSPEISECSKLQ 321 (407)
Q Consensus 244 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~--~~~~~~~~~~~L~~L~l~~c~~l~ 321 (407)
.+++|++|+++++......+ ...+.+++|+.|+++++ .++.++. ..+. .+++|+.|+++++....
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~---~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVF---------QGCSTLKRLQTLILQRN-GLKNFFKVALMTK---NMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTT---------TTCCSCSSCCEEECCSS-CCCBTTHHHHTTT---TCTTCCEEECTTSCCBS
T ss_pred CCCCceEEECCCCccccchh---------hhhcccCCCCEEECCCC-CcCCcccchhhhc---CCCCCCEEECCCCcCCC
Confidence 46677777776665332211 12566788888888883 5554432 1222 37888888888876443
Q ss_pred ccccc-cccccccCEEEeccCcCcccccCchhhhcc-ccCCEEEEecccchhhhhccccCCcccceeEecccceEecCCC
Q 047829 322 KLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESL-VNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCL 399 (407)
Q Consensus 322 ~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~c 399 (407)
.+|.. +..+++|++|+++++. +.... +..+ ++|+.|++++| .+..++ ..+..+++|++|+++++
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~~L~~L~L~~N-~l~~ip--------~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNM-LTGSV----FRCLPPKVKVLDLHNN-RIMSIP--------KDVTHLQALQELNVASN 483 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSC-CCGGG----GSSCCTTCSEEECCSS-CCCCCC--------TTTTSSCCCSEEECCSS
T ss_pred ccChhhhcCcccCCEEECCCCC-CCcch----hhhhcCcCCEEECCCC-cCcccC--------hhhcCCCCCCEEECCCC
Confidence 36643 5667888999988854 43322 2233 58899999888 566554 33446788999987764
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=160.71 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=79.8
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccc-ccccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKL-VPASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
...+++++.|+++++.....+....+.. +++|+.|++++|. ++.+ |..+..+++|++|++++ +.+..+.+ ...
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~---l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~-~~~ 538 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTE---LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH-NNFFSLDT-FPY 538 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTT---CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT-SCCCBCCC-GGG
T ss_pred cccchhhhhhhhhhcccccccCchhhhh---ccccCEEECCCCc-cCCcChHHHcCCCCCCEEECCC-CcCCCCCh-hHH
Confidence 3456788888888876566555555444 8889999999875 4544 55678889999999988 46777644 345
Q ss_pred hccccCCEEEEecccchhhhhccccCCcccceeEe-cccceEecCCCC
Q 047829 354 ESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVF-RKLEYLGLDCLP 400 (407)
Q Consensus 354 ~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~-~~L~~L~l~~cp 400 (407)
..+++|+.|+++++ .+..+. +..+..+ ++|++|++++.|
T Consensus 539 ~~l~~L~~L~Ls~N-~l~~~~-------~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 539 KCLNSLQVLDYSLN-HIMTSK-------KQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTCTTCCEEECTTS-CCCBCC-------SSCTTCCCTTCCEEECTTCC
T ss_pred hCCCCCCEEECCCC-cCCCCC-------HHHHHhhhCcCCEEEeeCCC
Confidence 67889999999888 444443 3445555 579999998765
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-18 Score=173.19 Aligned_cols=219 Identities=13% Similarity=0.048 Sum_probs=132.2
Q ss_pred ccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccc--------
Q 047829 131 FFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLID-------- 202 (407)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-------- 202 (407)
.+++|+.|++.+|. +.+......+..+++|+.|+++++-....+.. +...+++|++|++.+
T Consensus 291 ~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~----------~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 291 FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEV----------LAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH----------HHHHCTTCCEEEEECCCCSSTTS
T ss_pred hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHH----------HHHhCCCCCEEEeecCccccccc
Confidence 46789999999887 43322223467899999999984321111110 001247899999985
Q ss_pred --cccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc---ccccchhhhccccccccccccc
Q 047829 203 --LPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK---LKSEENLLVADQIQHLFDEKVT 277 (407)
Q Consensus 203 --~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~---~~~l~~~~~~~~~~~~~~~~~~ 277 (407)
|..+..... ......+++|++|++ +|+.++......+...+++|++|++++ |..+++.+...++. .....
T Consensus 360 ~~~~~~~~~~~-~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~---~~~~~ 434 (592)
T 3ogk_B 360 DEEGLVSQRGL-IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR---SLLIG 434 (592)
T ss_dssp STTCCCCHHHH-HHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH---HHHHH
T ss_pred cccCccCHHHH-HHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH---HHHHh
Confidence 555543100 001235789999999 667777665555556688999999974 44444321000000 01334
Q ss_pred cCCcceEecccccc-cccccccccccccccCCcCceeeccCcccc-ccccccccccccCEEEeccCcCcccccCchhhhc
Q 047829 278 FPQLRFLELSRLHK-VQHLWKENAESNKVFANLKSPEISECSKLQ-KLVPASWHLENLATLKVSKCHGLINLLTLSTSES 355 (407)
Q Consensus 278 l~~L~~L~L~~~~~-l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 355 (407)
+++|+.|++++|.. ++......+. ..+++|+.|++++|..-. .++..+..+++|++|++++|+ +.+.....+...
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 511 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIG--QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHH--HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCCccHHHHHHHH--HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence 78899999976543 2221111111 126789999998776322 234445678889999999887 554333344556
Q ss_pred cccCCEEEEeccc
Q 047829 356 LVNLERMKITDCK 368 (407)
Q Consensus 356 l~~L~~L~i~~c~ 368 (407)
+++|+.|++++|.
T Consensus 512 l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 512 LPSLRYLWVQGYR 524 (592)
T ss_dssp CSSCCEEEEESCB
T ss_pred cCccCeeECcCCc
Confidence 8899999999885
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=146.27 Aligned_cols=200 Identities=12% Similarity=0.111 Sum_probs=130.3
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccc-cccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTF-SQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.++|+.|+++++ +++..+... ...+++|++|++++| .+..+ |..+..+++|++|++.++ .+.
T Consensus 51 ~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n--------------~l~ 113 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN--------------QLK 113 (330)
T ss_dssp CTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS--------------CCS
T ss_pred CCCCeEEECCCC-cCCEeChhh-hccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC--------------cCC
Confidence 368999999996 577776543 457899999999999 56665 778899999999999651 112
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.+|..+. ++|++|+++++. +....... + ..+++|+.|++.+|...........+..+++|+.|++++|. +..+
T Consensus 114 ~l~~~~~--~~L~~L~l~~n~-l~~~~~~~-~--~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l 186 (330)
T 1xku_A 114 ELPEKMP--KTLQELRVHENE-ITKVRKSV-F--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTI 186 (330)
T ss_dssp BCCSSCC--TTCCEEECCSSC-CCBBCHHH-H--TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSC
T ss_pred ccChhhc--ccccEEECCCCc-ccccCHhH-h--cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccC
Confidence 2333322 789999999886 33322111 1 34789999999998764321223457889999999999874 3332
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
+. ..+++|++|++.++. +..+. ...+..+++|+.|+++++ .++..++.. ...+++|++|++++
T Consensus 187 ~~------------~~~~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 187 PQ------------GLPPSLTELHLDGNK-ITKVD--AASLKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNN 249 (330)
T ss_dssp CS------------SCCTTCSEEECTTSC-CCEEC--TGGGTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCS
T ss_pred Cc------------cccccCCEEECCCCc-CCccC--HHHhcCCCCCCEEECCCC-cCceeChhh-ccCCCCCCEEECCC
Confidence 21 123788888888763 33321 112445677777777764 355544433 23356666666655
Q ss_pred cc
Q 047829 256 LK 257 (407)
Q Consensus 256 ~~ 257 (407)
+.
T Consensus 250 N~ 251 (330)
T 1xku_A 250 NK 251 (330)
T ss_dssp SC
T ss_pred Cc
Confidence 53
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=147.04 Aligned_cols=289 Identities=13% Similarity=0.086 Sum_probs=195.4
Q ss_pred ccceeeeCcccccccccccccccccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 19 ELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 19 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
+++.++++++ .++.+|... .++|++|+++++ .+..++ ..+..+++|++|++.++. +..+
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~--------------l~~~ 93 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI----SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK--------------ISKI 93 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC--------------CCEE
T ss_pred cCCEEECCCC-CccccCCCC----CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc--------------cCcc
Confidence 5888888875 577776542 489999999999 576664 468899999999996511 1112
Q ss_pred -HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 98 -YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 98 -~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
+..+..+++|++|+++++. +.. ++...+++|+.|++.+|... .+ +...+..+++|+.|++++|.. +..+
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~-l~~------l~~~~~~~L~~L~l~~n~i~-~~-~~~~~~~l~~L~~L~l~~n~l-~~~~ 163 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNH-LVE------IPPNLPSSLVELRIHDNRIR-KV-PKGVFSGLRNMNCIEMGGNPL-ENSG 163 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSC-CCS------CCSSCCTTCCEEECCSSCCC-CC-CSGGGSSCSSCCEEECCSCCC-BGGG
T ss_pred CHhHhhCcCCCCEEECCCCc-CCc------cCccccccCCEEECCCCccC-cc-CHhHhCCCccCCEEECCCCcc-ccCC
Confidence 4567788999999999886 443 33333589999999998664 33 334578899999999998753 2111
Q ss_pred ccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccc
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKL 256 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 256 (407)
.. ...+. .+ +|+.|+++++. +..++.. .+++|+.|+++++ .++..++.. ...+++|++|+++++
T Consensus 164 ~~------~~~~~-~l-~L~~L~l~~n~-l~~l~~~-----~~~~L~~L~l~~n-~i~~~~~~~-l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 164 FE------PGAFD-GL-KLNYLRISEAK-LTGIPKD-----LPETLNELHLDHN-KIQAIELED-LLRYSKLYRLGLGHN 227 (332)
T ss_dssp SC------TTSSC-SC-CCSCCBCCSSB-CSSCCSS-----SCSSCSCCBCCSS-CCCCCCTTS-STTCTTCSCCBCCSS
T ss_pred CC------ccccc-CC-ccCEEECcCCC-CCccCcc-----ccCCCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCC
Confidence 00 00111 22 78888888763 4444332 2378999999885 566665544 345899999999887
Q ss_pred cccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cc------c
Q 047829 257 KSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SW------H 329 (407)
Q Consensus 257 ~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~------~ 329 (407)
..-. +.+ .....+++|+.|+++++ .++.+|.. + ..+++|+.|++++++ ++.++.. +. .
T Consensus 228 ~l~~-~~~--------~~~~~l~~L~~L~L~~N-~l~~lp~~-l---~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 228 QIRM-IEN--------GSLSFLPTLRELHLDNN-KLSRVPAG-L---PDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp CCCC-CCT--------TGGGGCTTCCEEECCSS-CCCBCCTT-G---GGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSS
T ss_pred cCCc-CCh--------hHhhCCCCCCEEECCCC-cCeecChh-h---hcCccCCEEECCCCC-CCccChhHccccccccc
Confidence 5322 211 12567899999999984 66777765 2 348999999999865 5555432 11 1
Q ss_pred ccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 330 LENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 330 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
.++|+.+++++++.......+.....+++|+.++++++.
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 578999999986543222234556678999999998874
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-18 Score=170.90 Aligned_cols=318 Identities=14% Similarity=0.062 Sum_probs=172.3
Q ss_pred eecccceeeeCccccccccccc---ccccccCCccEEeecCCC-ccc--cccccccCCCCcceeEEEeecccccccccCc
Q 047829 16 AFSELKFLILDYLPRLTSFCLE---NYTLEFPSLERVSVTFCP-DMK--TFSQGILSTPKLHKVQVIVKEEGELYHREGN 89 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~l~~c~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 89 (407)
.+++|++|++++|. +...... .....+++|++|++++|. .+. .++.-+..+++|++|++.++
T Consensus 154 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~----------- 221 (594)
T 2p1m_B 154 TCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA----------- 221 (594)
T ss_dssp HCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT-----------
T ss_pred hCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC-----------
Confidence 46788888888875 4332211 112255677777777774 111 12222244677777777531
Q ss_pred chhhHHHHHHhhcCCCCccEEEeccC-------------------CCccee-ccCC----CCCc--cccCCceEEEEecC
Q 047829 90 LNSTIQKCYKEMIGFRDIWYLQLSYF-------------------PRLKEI-WHGQ----ALPV--SFFNNLCKLVVDDC 143 (407)
Q Consensus 90 ~~~~~~~l~~~~~~~~~L~~L~l~~~-------------------~~l~~~-~~~~----~~~~--~~l~~L~~L~l~~~ 143 (407)
..+..++..+..+++|++|.++.+ ++++.. .... .++. ..+++|+.|++.+|
T Consensus 222 --~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 222 --VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp --SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTC
T ss_pred --CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCC
Confidence 112224444444455555553322 222211 0000 0111 24688999999988
Q ss_pred CCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccc--------cccccccccCCCc
Q 047829 144 TNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLID--------LPKLKRFCNFTGN 215 (407)
Q Consensus 144 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~l~~i~~~~~~ 215 (407)
. +.+......+..+++|+.|++++|-....+.. +...+++|++|++.+ +..+..... ...
T Consensus 300 ~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~----------l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l-~~l 367 (594)
T 2p1m_B 300 T-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV----------LASTCKDLRELRVFPSEPFVMEPNVALTEQGL-VSV 367 (594)
T ss_dssp C-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH----------HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH-HHH
T ss_pred C-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH----------HHHhCCCCCEEEEecCcccccccCCCCCHHHH-HHH
Confidence 7 44322223356889999999988721111100 011247888888843 223322100 000
Q ss_pred cccCCCccEEeEecCCCCccccCcccccccCCCceeecc-----cccccchhhhccccccccc-cccccCCcceEecccc
Q 047829 216 IIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQ-----KLKSEENLLVADQIQHLFD-EKVTFPQLRFLELSRL 289 (407)
Q Consensus 216 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~-----~~~~l~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~ 289 (407)
...+++|+.|.+ +|+.++......+...+++|++|+++ +|..+++..... .+. -...+++|+.|++++
T Consensus 368 ~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~----~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 368 SMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI----GFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH----HHHHHHHHCTTCCEEECCS-
T ss_pred HHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh----HHHHHHhhCCCccEEeecC-
Confidence 124788888844 56677665555555568899999988 455555221100 010 134577899999865
Q ss_pred cccccccccccccccccCCcCceeeccCcccccccccc-ccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPAS-WHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
.++......+. ..+++|+.|++++|......+..+ ..+++|++|++++|+. .+.....+...+++|+.|++++|+
T Consensus 442 -~l~~~~~~~l~--~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 442 -LLTDKVFEYIG--TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp -SCCHHHHHHHH--HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred -cccHHHHHHHH--HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 33332211111 126789999998876322211122 5578899999988765 433233345567889999998886
Q ss_pred c
Q 047829 369 M 369 (407)
Q Consensus 369 ~ 369 (407)
.
T Consensus 518 ~ 518 (594)
T 2p1m_B 518 V 518 (594)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-15 Score=152.57 Aligned_cols=257 Identities=16% Similarity=0.087 Sum_probs=182.5
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
.+++.|+++++ +++.+|... .++|++|++++| .++.+|. .+++|++|++.++. +..+
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l----~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~--------------l~~l 96 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCL----PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ--------------LTSL 96 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCC----CTTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC--------------CSCC
T ss_pred CCCcEEEecCC-CcCccChhh----CCCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc--------------CCcC
Confidence 35888999884 577776653 289999999999 7888885 67899999996521 1123
Q ss_pred HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeec
Q 047829 98 YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFH 177 (407)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (407)
|. .+++|++|+++++. ++. ++. .+++|+.|.+.+|... .++. .+++|++|++++|. +..++.
T Consensus 97 p~---~l~~L~~L~Ls~N~-l~~------l~~-~l~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~-l~~l~~ 158 (622)
T 3g06_A 97 PV---LPPGLLELSIFSNP-LTH------LPA-LPSGLCKLWIFGNQLT-SLPV-----LPPGLQELSVSDNQ-LASLPA 158 (622)
T ss_dssp CC---CCTTCCEEEECSCC-CCC------CCC-CCTTCCEEECCSSCCS-CCCC-----CCTTCCEEECCSSC-CSCCCC
T ss_pred CC---CCCCCCEEECcCCc-CCC------CCC-CCCCcCEEECCCCCCC-cCCC-----CCCCCCEEECcCCc-CCCcCC
Confidence 32 56889999999876 433 222 4688999999987643 3443 24789999999873 333221
Q ss_pred cCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccc
Q 047829 178 LEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLK 257 (407)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 257 (407)
.+++|+.|.+.++ .+..++ ..+++|+.|+++++ .++.++. .+++|+.|.++++.
T Consensus 159 -------------~~~~L~~L~L~~N-~l~~l~------~~~~~L~~L~Ls~N-~l~~l~~-----~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 159 -------------LPSELCKLWAYNN-QLTSLP------MLPSGLQELSVSDN-QLASLPT-----LPSELYKLWAYNNR 212 (622)
T ss_dssp -------------CCTTCCEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred -------------ccCCCCEEECCCC-CCCCCc------ccCCCCcEEECCCC-CCCCCCC-----ccchhhEEECcCCc
Confidence 3478999998875 455443 24688999999885 4666543 26889999998775
Q ss_pred ccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEE
Q 047829 258 SEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLK 337 (407)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~ 337 (407)
.- .+ ...+++|+.|+++++ .++.++.. +++|+.|+++++ .++.+|. .+++|+.|+
T Consensus 213 l~-~l------------~~~~~~L~~L~Ls~N-~L~~lp~~-------l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 213 LT-SL------------PALPSGLKELIVSGN-RLTSLPVL-------PSELKELMVSGN-RLTSLPM---LPSGLLSLS 267 (622)
T ss_dssp CS-SC------------CCCCTTCCEEECCSS-CCSCCCCC-------CTTCCEEECCSS-CCSCCCC---CCTTCCEEE
T ss_pred cc-cc------------CCCCCCCCEEEccCC-ccCcCCCC-------CCcCcEEECCCC-CCCcCCc---ccccCcEEe
Confidence 32 21 123578999999984 67777732 688999999987 5677775 678999999
Q ss_pred eccCcCcccccCchhhhccccCCEEEEecccc
Q 047829 338 VSKCHGLINLLTLSTSESLVNLERMKITDCKM 369 (407)
Q Consensus 338 l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~ 369 (407)
+++| .+..+ +. ....+++|+.|++++|+-
T Consensus 268 Ls~N-~L~~l-p~-~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 268 VYRN-QLTRL-PE-SLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCSS-CCCSC-CG-GGGGSCTTCEEECCSCCC
T ss_pred CCCC-CCCcC-CH-HHhhccccCEEEecCCCC
Confidence 9985 66666 33 356789999999999853
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=145.01 Aligned_cols=109 Identities=12% Similarity=0.025 Sum_probs=68.5
Q ss_pred CCccEEeecCCCccc--cccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 44 PSLERVSVTFCPDMK--TFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
.++++|+++++.--. .+|..+.++++|++|++.+++. ....+|..+..+++|++|+++++.-....
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN------------LVGPIPPAIAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT------------EESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc------------ccccCChhHhcCCCCCEEECcCCeeCCcC
Confidence 689999999984333 6888888999999999963111 11124445566677778877776522122
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
+... ..+++|+.|++++|.....++. .+..+++|++|++++|.
T Consensus 118 p~~~----~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 118 PDFL----SQIKTLVTLDFSYNALSGTLPP--SISSLPNLVGITFDGNR 160 (313)
T ss_dssp CGGG----GGCTTCCEEECCSSEEESCCCG--GGGGCTTCCEEECCSSC
T ss_pred CHHH----hCCCCCCEEeCCCCccCCcCCh--HHhcCCCCCeEECcCCc
Confidence 2211 3467777777777655433332 36677777777777664
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-16 Score=144.57 Aligned_cols=237 Identities=13% Similarity=0.106 Sum_probs=125.2
Q ss_pred hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCC
Q 047829 101 MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEE 180 (407)
Q Consensus 101 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 180 (407)
+..+++|++|+++++. +....... | ..+++|+.|++++|... .+ +...+..+++|++|++++|. +..++...
T Consensus 72 ~~~l~~L~~L~L~~n~-l~~~~~~~-~--~~l~~L~~L~Ls~n~l~-~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~- 143 (353)
T 2z80_A 72 LQRCVNLQALVLTSNG-INTIEEDS-F--SSLGSLEHLDLSYNYLS-NL-SSSWFKPLSSLTFLNLLGNP-YKTLGETS- 143 (353)
T ss_dssp TTTCTTCCEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSSCCS-SC-CHHHHTTCTTCSEEECTTCC-CSSSCSSC-
T ss_pred hccCCCCCEEECCCCc-cCccCHhh-c--CCCCCCCEEECCCCcCC-cC-CHhHhCCCccCCEEECCCCC-CcccCchh-
Confidence 3455666666666553 33332221 2 23566777777766443 22 22345667777777777653 22222100
Q ss_pred ccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccc
Q 047829 181 LSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEE 260 (407)
Q Consensus 181 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 260 (407)
.+ ..+++|++|++.++..+..+.. ..+..+++|+.|++.++ .++...+.. ...+++|++|+++++.. .
T Consensus 144 ------~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~l~~n~l-~ 211 (353)
T 2z80_A 144 ------LF-SHLTKLQILRVGNMDTFTKIQR--KDFAGLTFLEELEIDAS-DLQSYEPKS-LKSIQNVSHLILHMKQH-I 211 (353)
T ss_dssp ------SC-TTCTTCCEEEEEESSSCCEECT--TTTTTCCEEEEEEEEET-TCCEECTTT-TTTCSEEEEEEEECSCS-T
T ss_pred ------hh-ccCCCCcEEECCCCccccccCH--HHccCCCCCCEEECCCC-CcCccCHHH-HhccccCCeecCCCCcc-c
Confidence 01 1246777777776644444321 12445667777777765 355544433 23466777777766652 2
Q ss_pred hhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcc----ccccccccccccccCEE
Q 047829 261 NLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSK----LQKLVPASWHLENLATL 336 (407)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~----l~~l~~~~~~~~~L~~L 336 (407)
.+... ....+++|+.|+++++ .++.++...+......+.++.++++++.- +..+|..+..+++|++|
T Consensus 212 ~~~~~--------~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 212 LLLEI--------FVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282 (353)
T ss_dssp THHHH--------HHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEE
T ss_pred cchhh--------hhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEE
Confidence 22111 0223667777777773 44444333222222245566666665432 22355566777888888
Q ss_pred EeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 337 KVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 337 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+++++ .+..+ +......+++|++|++++++
T Consensus 283 ~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 283 EFSRN-QLKSV-PDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ECCCC-CCCcc-CHHHHhcCCCCCEEEeeCCC
Confidence 88874 56555 33344567788888887653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-17 Score=159.34 Aligned_cols=348 Identities=14% Similarity=0.000 Sum_probs=174.7
Q ss_pred ecccceeeeCcccccccccc---cccccccCCccEEeecCCCcccc-ccccc-cCCC----CcceeEEEeeccccccccc
Q 047829 17 FSELKFLILDYLPRLTSFCL---ENYTLEFPSLERVSVTFCPDMKT-FSQGI-LSTP----KLHKVQVIVKEEGELYHRE 87 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~-lp~~~-~~l~----~L~~L~l~~~~~~~~~~~~ 87 (407)
+++|++|++++|. +..... ......+++|++|+++++. +.. .+..+ ..++ +|++|++.+ .
T Consensus 27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~---------n 95 (461)
T 1z7x_W 27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQN---------C 95 (461)
T ss_dssp HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTT---------S
T ss_pred cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccC---------C
Confidence 5566666666653 332111 1112245666666666663 322 11111 1122 466666633 1
Q ss_pred CcchhhHHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCc---cccCCceEEEEecCCCCCcCC--ccchhhccccCC
Q 047829 88 GNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPV---SFFNNLCKLVVDDCTNMSSAI--PVNLLRCLNNLG 162 (407)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~ 162 (407)
.-.......++..+..+++|++|+++++. +....... +.. ...++|+.|++.+|....... ....+..+++|+
T Consensus 96 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 96 CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQL-LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHH-HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC
Confidence 11122344566777777788888887776 33211000 000 113568888887775432110 122355678888
Q ss_pred eeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccccc--CCCccccCCCccEEeEecCCCCccccCc-
Q 047829 163 WLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCN--FTGNIIELPMFWSLTIENCPDMETFISN- 239 (407)
Q Consensus 163 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~- 239 (407)
+|++++|. +...+... +........++|++|++.++. +..... ....+..+++|+.|+++++ .++.....
T Consensus 174 ~L~L~~n~-i~~~~~~~----l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~ 246 (461)
T 1z7x_W 174 ELTVSNND-INEAGVRV----LCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAE 246 (461)
T ss_dssp EEECCSSB-CHHHHHHH----HHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHH
T ss_pred EEECcCCC-cchHHHHH----HHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHH
Confidence 88888764 22211000 000010113578888887763 222100 0112335678888888776 34433211
Q ss_pred ---ccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccccc--ccccCCcCceee
Q 047829 240 ---STSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAES--NKVFANLKSPEI 314 (407)
Q Consensus 240 ---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~--~~~~~~L~~L~l 314 (407)
.+...+++|++|++++|..-..-... -......+++|+.|+++++ .++......+.. ....++|+.|++
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-----l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGD-----LCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHH-----HHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHH-----HHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEc
Confidence 11223678888888877432210000 0111344678888888874 343322111110 001357888888
Q ss_pred ccCccccc----cccccccccccCEEEeccCcCcccccCchhhh----ccccCCEEEEecccchh-----hhhccccCCc
Q 047829 315 SECSKLQK----LVPASWHLENLATLKVSKCHGLINLLTLSTSE----SLVNLERMKITDCKMME-----EIIQSQVGEE 381 (407)
Q Consensus 315 ~~c~~l~~----l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~----~l~~L~~L~i~~c~~l~-----~~~~~~~g~~ 381 (407)
++|.--.. ++..+..+++|++|+++++ .+.+.....+.. ..++|+.|++++|. +. .++
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~------- 391 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA------- 391 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH-------
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHH-------
Confidence 87763221 3444556688888888875 454442222222 14578888888873 33 232
Q ss_pred ccceeEecccceEecCCCC
Q 047829 382 AEDCIVFRKLEYLGLDCLP 400 (407)
Q Consensus 382 ~~~~~~~~~L~~L~l~~cp 400 (407)
..+..+++|++|++++++
T Consensus 392 -~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 392 -ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp -HHHHHCCCCCEEECCSSS
T ss_pred -HHHHhCCCccEEECCCCC
Confidence 344557788888887764
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-15 Score=143.63 Aligned_cols=296 Identities=19% Similarity=0.147 Sum_probs=149.5
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
++|+.|+++++ .++.+|. .+++|++|+++++ .+..+|.. .++|++|++.++ .+..+
T Consensus 91 ~~L~~L~l~~n-~l~~lp~-----~~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n--------------~l~~l 146 (454)
T 1jl5_A 91 PHLESLVASCN-SLTELPE-----LPQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNN--------------QLEKL 146 (454)
T ss_dssp TTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSS--------------CCSSC
T ss_pred CCCCEEEccCC-cCCcccc-----ccCCCcEEECCCC-ccCcccCC---CCCCCEEECcCC--------------CCCCC
Confidence 57888888774 4555542 2377888888887 56555521 257888888541 11223
Q ss_pred HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeec
Q 047829 98 YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFH 177 (407)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (407)
| ++..+++|++|+++++. ++. +| ....+|+.|++++|.... ++ . ++.+++|+.|++++|. +..++.
T Consensus 147 p-~~~~l~~L~~L~l~~N~-l~~------lp-~~~~~L~~L~L~~n~l~~-l~-~--~~~l~~L~~L~l~~N~-l~~l~~ 212 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNS-LKK------LP-DLPPSLEFIAAGNNQLEE-LP-E--LQNLPFLTAIYADNNS-LKKLPD 212 (454)
T ss_dssp C-CCTTCTTCCEEECCSSC-CSC------CC-CCCTTCCEEECCSSCCSS-CC-C--CTTCTTCCEEECCSSC-CSSCCC
T ss_pred c-ccCCCCCCCEEECCCCc-Ccc------cC-CCcccccEEECcCCcCCc-Cc-c--ccCCCCCCEEECCCCc-CCcCCC
Confidence 3 35667778888888765 332 22 123578888887765433 33 2 5777778888777763 222211
Q ss_pred cCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccc
Q 047829 178 LEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLK 257 (407)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 257 (407)
..++|+.|+++++ .+..++. +..+++|+.|+++++ ++++++. .+++|++|+++++.
T Consensus 213 -------------~~~~L~~L~l~~n-~l~~lp~----~~~l~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 213 -------------LPLSLESIVAGNN-ILEELPE----LQNLPFLTTIYADNN-LLKTLPD-----LPPSLEALNVRDNY 268 (454)
T ss_dssp -------------CCTTCCEEECCSS-CCSSCCC----CTTCTTCCEEECCSS-CCSSCCS-----CCTTCCEEECCSSC
T ss_pred -------------CcCcccEEECcCC-cCCcccc----cCCCCCCCEEECCCC-cCCcccc-----cccccCEEECCCCc
Confidence 1246666666655 3333321 335566666666553 3443322 13555556555543
Q ss_pred ccchhhhc----ccccc---ccccc-cccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccccc
Q 047829 258 SEENLLVA----DQIQH---LFDEK-VTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWH 329 (407)
Q Consensus 258 ~l~~~~~~----~~~~~---~~~~~-~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 329 (407)
.. .+... ..+.. .+... ...++|+.|+++++ .+..++.. .++|+.|+++++. +..+|..
T Consensus 269 l~-~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N-~l~~i~~~-------~~~L~~L~Ls~N~-l~~lp~~--- 335 (454)
T 1jl5_A 269 LT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN-EIRSLCDL-------PPSLEELNVSNNK-LIELPAL--- 335 (454)
T ss_dssp CS-CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS-CCSEECCC-------CTTCCEEECCSSC-CSCCCCC---
T ss_pred cc-ccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCC-cCCcccCC-------cCcCCEEECCCCc-ccccccc---
Confidence 21 11000 00000 00000 01245666666652 33333211 2478888887753 4555543
Q ss_pred ccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEe-------------cccceEec
Q 047829 330 LENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVF-------------RKLEYLGL 396 (407)
Q Consensus 330 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~-------------~~L~~L~l 396 (407)
+++|++|++++| .+..++. .+++|++|+++++. +..++ ..+..+..+ ++|++|++
T Consensus 336 ~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~l~-----~ip~~l~~L~~n~~~~~i~~~~~~L~~L~l 403 (454)
T 1jl5_A 336 PPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFP-----DIPESVEDLRMNSHLAEVPELPQNLKQLHV 403 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCC-----CCCTTCCEEECCC-----------------
T ss_pred CCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCcCC-----CChHHHHhhhhcccccccccccCcCCEEEC
Confidence 578888888874 5555532 35788888888773 33311 112233333 67888888
Q ss_pred CCCC
Q 047829 397 DCLP 400 (407)
Q Consensus 397 ~~cp 400 (407)
++++
T Consensus 404 s~N~ 407 (454)
T 1jl5_A 404 ETNP 407 (454)
T ss_dssp ----
T ss_pred CCCc
Confidence 7754
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-15 Score=144.76 Aligned_cols=263 Identities=19% Similarity=0.109 Sum_probs=129.0
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+++|+.|+++++ ++..++.. .++|++|++++| .+..+| .++.+++|++|++.++.- ..
T Consensus 110 ~~~L~~L~l~~n-~l~~l~~~-----~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l--------------~~ 167 (454)
T 1jl5_A 110 PQSLKSLLVDNN-NLKALSDL-----PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSL--------------KK 167 (454)
T ss_dssp CTTCCEEECCSS-CCSCCCSC-----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCC--------------SC
T ss_pred cCCCcEEECCCC-ccCcccCC-----CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcC--------------cc
Confidence 367888888875 45544322 267888888888 666777 577888888888854211 00
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCC-------------------cCCccchhhc
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMS-------------------SAIPVNLLRC 157 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------------~~~~~~~~~~ 157 (407)
+|. ...+|++|+++++. +...+ . + ..+++|+.|++.+|.... .++. ++.
T Consensus 168 lp~---~~~~L~~L~L~~n~-l~~l~-~--~--~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~---~~~ 235 (454)
T 1jl5_A 168 LPD---LPPSLEFIAAGNNQ-LEELP-E--L--QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE---LQN 235 (454)
T ss_dssp CCC---CCTTCCEEECCSSC-CSSCC-C--C--TTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC---CTT
T ss_pred cCC---CcccccEEECcCCc-CCcCc-c--c--cCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc---cCC
Confidence 111 11355555555543 22221 1 1 224455555555443321 2221 344
Q ss_pred cccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCcccc
Q 047829 158 LNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFI 237 (407)
Q Consensus 158 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 237 (407)
+++|+.|++++|. +..++ ..+++|+.|++.++. +..++. .+++|+.|+++++ .+++++
T Consensus 236 l~~L~~L~l~~N~-l~~l~-------------~~~~~L~~L~l~~N~-l~~l~~------~~~~L~~L~ls~N-~l~~l~ 293 (454)
T 1jl5_A 236 LPFLTTIYADNNL-LKTLP-------------DLPPSLEALNVRDNY-LTDLPE------LPQSLTFLDVSEN-IFSGLS 293 (454)
T ss_dssp CTTCCEEECCSSC-CSSCC-------------SCCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSEES
T ss_pred CCCCCEEECCCCc-CCccc-------------ccccccCEEECCCCc-ccccCc------ccCcCCEEECcCC-ccCccc
Confidence 4444444444432 11111 012445555554432 222211 1245555555553 233332
Q ss_pred CcccccccCCCceeecccccccchhhhcccccccccccccc-CCcceEecccccccccccccccccccccCCcCceeecc
Q 047829 238 SNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTF-PQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISE 316 (407)
Q Consensus 238 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~ 316 (407)
. ..++|+.|+++++.... ...+ ++|+.|++++ ..+..++.. +++|+.|++++
T Consensus 294 ~-----~~~~L~~L~l~~N~l~~--------------i~~~~~~L~~L~Ls~-N~l~~lp~~-------~~~L~~L~L~~ 346 (454)
T 1jl5_A 294 E-----LPPNLYYLNASSNEIRS--------------LCDLPPSLEELNVSN-NKLIELPAL-------PPRLERLIASF 346 (454)
T ss_dssp C-----CCTTCCEEECCSSCCSE--------------ECCCCTTCCEEECCS-SCCSCCCCC-------CTTCCEEECCS
T ss_pred C-----cCCcCCEEECcCCcCCc--------------ccCCcCcCCEEECCC-Ccccccccc-------CCcCCEEECCC
Confidence 1 12455555555443211 1223 4889999988 456666643 67899999988
Q ss_pred CccccccccccccccccCEEEeccCcCcccc--cCchhhhcc-------------ccCCEEEEeccc
Q 047829 317 CSKLQKLVPASWHLENLATLKVSKCHGLINL--LTLSTSESL-------------VNLERMKITDCK 368 (407)
Q Consensus 317 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~--~~~~~~~~l-------------~~L~~L~i~~c~ 368 (407)
+ .++.+|. .+++|++|+++++ .+..+ .+. ....+ ++|+.|++++++
T Consensus 347 N-~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~-~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 347 N-HLAEVPE---LPQNLKQLHVEYN-PLREFPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp S-CCSCCCC---CCTTCCEEECCSS-CCSSCCCCCT-TCCEEECCC---------------------
T ss_pred C-ccccccc---hhhhccEEECCCC-CCCcCCCChH-HHHhhhhcccccccccccCcCCEEECCCCc
Confidence 7 4566765 4688999999874 44442 122 22233 678888888873
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=145.24 Aligned_cols=235 Identities=18% Similarity=0.098 Sum_probs=141.7
Q ss_pred cccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHH
Q 047829 18 SELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC 97 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 97 (407)
++|+.|+++++ +++.+|. .+++|++|++++| .+..+|. .+++|++|++.++ .+..+
T Consensus 61 ~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N--------------~l~~l 116 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN--------------PLTHL 116 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC--------------CCCCC
T ss_pred CCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC--------------cCCCC
Confidence 57777877775 4665544 3577888888877 5667774 6677787777541 11112
Q ss_pred HHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeec
Q 047829 98 YKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFH 177 (407)
Q Consensus 98 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 177 (407)
|. .+++|++|+++++. +.. +| ..+++|+.|++++|... .++. .+++|+.|++++|. +..++
T Consensus 117 ~~---~l~~L~~L~L~~N~-l~~------lp-~~l~~L~~L~Ls~N~l~-~l~~-----~~~~L~~L~L~~N~-l~~l~- 177 (622)
T 3g06_A 117 PA---LPSGLCKLWIFGNQ-LTS------LP-VLPPGLQELSVSDNQLA-SLPA-----LPSELCKLWAYNNQ-LTSLP- 177 (622)
T ss_dssp CC---CCTTCCEEECCSSC-CSC------CC-CCCTTCCEEECCSSCCS-CCCC-----CCTTCCEEECCSSC-CSCCC-
T ss_pred CC---CCCCcCEEECCCCC-CCc------CC-CCCCCCCEEECcCCcCC-CcCC-----ccCCCCEEECCCCC-CCCCc-
Confidence 21 34667777777765 332 22 22477778887776443 3322 23567777777653 33322
Q ss_pred cCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccccc
Q 047829 178 LEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLK 257 (407)
Q Consensus 178 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 257 (407)
..+++|+.|+++++. +..++. .+++|+.|++.++ .++.++. .+++|+.|+++++.
T Consensus 178 ------------~~~~~L~~L~Ls~N~-l~~l~~------~~~~L~~L~L~~N-~l~~l~~-----~~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 178 ------------MLPSGLQELSVSDNQ-LASLPT------LPSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGNR 232 (622)
T ss_dssp ------------CCCTTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSSCCC-----CCTTCCEEECCSSC
T ss_pred ------------ccCCCCcEEECCCCC-CCCCCC------ccchhhEEECcCC-cccccCC-----CCCCCCEEEccCCc
Confidence 134777777777653 443321 2467777777764 4544432 25677777777663
Q ss_pred ccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEE
Q 047829 258 SEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLK 337 (407)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~ 337 (407)
+..+ ...+++|+.|+++++ .++.++.. +++|+.|++++| .++.+|..+..+++|+.|+
T Consensus 233 -L~~l------------p~~l~~L~~L~Ls~N-~L~~lp~~-------~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 233 -LTSL------------PVLPSELKELMVSGN-RLTSLPML-------PSGLLSLSVYRN-QLTRLPESLIHLSSETTVN 290 (622)
T ss_dssp -CSCC------------CCCCTTCCEEECCSS-CCSCCCCC-------CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEE
T ss_pred -cCcC------------CCCCCcCcEEECCCC-CCCcCCcc-------cccCcEEeCCCC-CCCcCCHHHhhccccCEEE
Confidence 2221 133567778888773 56666652 567777888776 4557777777777888888
Q ss_pred eccCc
Q 047829 338 VSKCH 342 (407)
Q Consensus 338 l~~c~ 342 (407)
+++++
T Consensus 291 L~~N~ 295 (622)
T 3g06_A 291 LEGNP 295 (622)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 87743
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.1e-15 Score=135.50 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=80.6
Q ss_pred ccCCCccEEeEecCCCCccccCcccccccC-CCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 217 IELPMFWSLTIENCPDMETFISNSTSILHM-TADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 217 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
..+++|++|++.++ .+++..+..+.. ++ +|++|+++++.....++.. ...+. |+.|+++++ .+...
T Consensus 146 ~~l~~L~~L~L~~N-~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~---------~~~l~-L~~L~Ls~N-~l~~~ 212 (313)
T 1ogq_A 146 SSLPNLVGITFDGN-RISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPT---------FANLN-LAFVDLSRN-MLEGD 212 (313)
T ss_dssp GGCTTCCEEECCSS-CCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGG---------GGGCC-CSEEECCSS-EEEEC
T ss_pred hcCCCCCeEECcCC-cccCcCCHHHhh-hhhcCcEEECcCCeeeccCChH---------HhCCc-ccEEECcCC-cccCc
Confidence 34556666666553 344333333222 33 6666666655432211111 22333 666777663 33333
Q ss_pred cccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhc
Q 047829 296 WKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQ 375 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 375 (407)
....+.. +++|+.|+++++.. ...++.+..+++|++|+++++ .+....+. ....+++|+.|++++|.--..++
T Consensus 213 ~~~~~~~---l~~L~~L~L~~N~l-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip- 285 (313)
T 1ogq_A 213 ASVLFGS---DKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNN-RIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIP- 285 (313)
T ss_dssp CGGGCCT---TSCCSEEECCSSEE-CCBGGGCCCCTTCCEEECCSS-CCEECCCG-GGGGCTTCCEEECCSSEEEEECC-
T ss_pred CCHHHhc---CCCCCEEECCCCce-eeecCcccccCCCCEEECcCC-cccCcCCh-HHhcCcCCCEEECcCCcccccCC-
Confidence 3333332 66777777776543 322233556677777777764 34433232 34456777777777763222222
Q ss_pred cccCCcccceeEecccceEecCCCCCcc
Q 047829 376 SQVGEEAEDCIVFRKLEYLGLDCLPSLT 403 (407)
Q Consensus 376 ~~~g~~~~~~~~~~~L~~L~l~~cp~l~ 403 (407)
.. ..+++|+.+++++.|.+.
T Consensus 286 -------~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 286 -------QG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -------CS-TTGGGSCGGGTCSSSEEE
T ss_pred -------CC-ccccccChHHhcCCCCcc
Confidence 22 456677777777766443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-14 Score=144.67 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=104.3
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
++|+.+.+..+....... ...+..+++++.+++..+ .+....+. ....+++++.|+++++.....+.+.
T Consensus 420 ~~L~~l~l~~~~~~~~~~--~~~~~~l~~l~~l~ls~n-~l~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~~~------- 488 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPD------- 488 (635)
T ss_dssp TTCCEEECTTSEEESTTS--SCTTTTCTTCCEEECTTS-CCEECCTT-TTTTCTTCCEEECTTCEEGGGEECS-------
T ss_pred ccccchhhhhcccccccc--cccccccccccccccccc-cccccccc-ccccchhhhhhhhhhcccccccCch-------
Confidence 556666655443322211 112445667777777653 45444443 3445788999999888765543222
Q ss_pred ccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccc-cccccccccCEEEeccCcCcccccCch
Q 047829 273 DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLV-PASWHLENLATLKVSKCHGLINLLTLS 351 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~ 351 (407)
....+++|+.|+++++ .++.++...+.. +++|+.|+++++. ++.++ ..+..+++|++|++++ +.+..+++..
T Consensus 489 -~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~---l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~ 561 (635)
T 4g8a_A 489 -IFTELRNLTFLDLSQC-QLEQLSPTAFNS---LSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQE 561 (635)
T ss_dssp -CCTTCTTCCEEECTTS-CCCEECTTTTTT---CTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSC
T ss_pred -hhhhccccCEEECCCC-ccCCcChHHHcC---CCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCC-CcCCCCCHHH
Confidence 2566899999999995 677777666654 8999999999874 56554 3567899999999998 5677775544
Q ss_pred hhhcc-ccCCEEEEec
Q 047829 352 TSESL-VNLERMKITD 366 (407)
Q Consensus 352 ~~~~l-~~L~~L~i~~ 366 (407)
+ ..+ ++|+.|++++
T Consensus 562 l-~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 562 L-QHFPSSLAFLNLTQ 576 (635)
T ss_dssp T-TCCCTTCCEEECTT
T ss_pred H-HhhhCcCCEEEeeC
Confidence 3 445 6899999975
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-14 Score=138.38 Aligned_cols=241 Identities=19% Similarity=0.150 Sum_probs=105.5
Q ss_pred cEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHH-HHhhcCCCCccEEEeccCCCcceeccCC
Q 047829 47 ERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC-YKEMIGFRDIWYLQLSYFPRLKEIWHGQ 125 (407)
Q Consensus 47 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 125 (407)
+.++.++. .+..+|..+. +++++|++.+. .+..+ +..+..+++|++|+++++. +.......
T Consensus 57 ~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n--------------~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~ 118 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQGIP--SNTRYLNLMEN--------------NIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGA 118 (452)
T ss_dssp CEEECCSS-CCSSCCSCCC--TTCSEEECCSS--------------CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred cEEEECCC-CcCccCCCCC--CCccEEECcCC--------------cCceECHHHcCCCCCCCEEECCCCc-cCCcChhh
Confidence 44544443 5556664433 46666666431 11111 2234455666666666654 33332222
Q ss_pred CCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccc
Q 047829 126 ALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPK 205 (407)
Q Consensus 126 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 205 (407)
| ..+++|+.|++++|... .+ +...+..+++|++|++++|. +..++... + ..+++|+.|++.++..
T Consensus 119 -~--~~l~~L~~L~L~~n~l~-~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~--------~-~~l~~L~~L~l~~~~~ 183 (452)
T 3zyi_A 119 -F--NGLASLNTLELFDNWLT-VI-PSGAFEYLSKLRELWLRNNP-IESIPSYA--------F-NRVPSLMRLDLGELKK 183 (452)
T ss_dssp -T--TTCTTCCEEECCSSCCS-BC-CTTTSSSCTTCCEEECCSCC-CCEECTTT--------T-TTCTTCCEEECCCCTT
T ss_pred -c--cCcccCCEEECCCCcCC-cc-ChhhhcccCCCCEEECCCCC-cceeCHhH--------H-hcCCcccEEeCCCCCC
Confidence 2 22556666666665432 22 22334556666666666543 22222100 0 1235566666655555
Q ss_pred ccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEe
Q 047829 206 LKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLE 285 (407)
Q Consensus 206 l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 285 (407)
+..+... .+..+++|+.|+++++ +++.++. ...+++|+.|+++++....... ..+..+++|+.|+
T Consensus 184 l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 184 LEYISEG--AFEGLFNLKYLNLGMC-NIKDMPN---LTPLVGLEELEMSGNHFPEIRP---------GSFHGLSSLKKLW 248 (452)
T ss_dssp CCEECTT--TTTTCTTCCEEECTTS-CCSSCCC---CTTCTTCCEEECTTSCCSEECG---------GGGTTCTTCCEEE
T ss_pred ccccChh--hccCCCCCCEEECCCC-ccccccc---ccccccccEEECcCCcCcccCc---------ccccCccCCCEEE
Confidence 5443221 2334555555555553 3333321 1234555555554443211100 0133344555555
Q ss_pred cccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEecc
Q 047829 286 LSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSK 340 (407)
Q Consensus 286 L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~ 340 (407)
+++ +.+..++...+.. +++|+.|+++++ +++.+|. .+..+++|++|++++
T Consensus 249 L~~-n~l~~~~~~~~~~---l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 249 VMN-SQVSLIERNAFDG---LASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CTT-SCCCEECTTTTTT---CTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred eCC-CcCceECHHHhcC---CCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 554 2333333333322 445555555544 2333332 223444555555544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-16 Score=144.50 Aligned_cols=246 Identities=13% Similarity=0.029 Sum_probs=142.9
Q ss_pred ccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcce
Q 047829 42 EFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKE 120 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 120 (407)
.+++|++|+++++ .+..++ ..+..+++|++|++.+ +. +..
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-------------------------------------n~-l~~ 72 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSS-------------------------------------NV-LYE 72 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTT-------------------------------------SC-CEE
T ss_pred cCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCC-------------------------------------Cc-CCc
Confidence 4567888888887 555443 4556666677666633 22 111
Q ss_pred eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEec
Q 047829 121 IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRL 200 (407)
Q Consensus 121 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 200 (407)
... + ..+++|+.|++++|... . +...++|+.|++++|. +..++. ..+++|+.|++
T Consensus 73 ~~~---~--~~l~~L~~L~Ls~n~l~-~------l~~~~~L~~L~l~~n~-l~~~~~------------~~~~~L~~L~l 127 (317)
T 3o53_A 73 TLD---L--ESLSTLRTLDLNNNYVQ-E------LLVGPSIETLHAANNN-ISRVSC------------SRGQGKKNIYL 127 (317)
T ss_dssp EEE---E--TTCTTCCEEECCSSEEE-E------EEECTTCCEEECCSSC-CSEEEE------------CCCSSCEEEEC
T ss_pred chh---h--hhcCCCCEEECcCCccc-c------ccCCCCcCEEECCCCc-cCCcCc------------cccCCCCEEEC
Confidence 100 0 22455666666555322 1 1223566666666653 222221 12466677776
Q ss_pred cccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCC
Q 047829 201 IDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQ 280 (407)
Q Consensus 201 ~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~ 280 (407)
.++. +..+.. ..+..+++|+.|+++++ .++...+..+...+++|++|+++++..- .+ +....+++
T Consensus 128 ~~N~-l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~----------~~~~~l~~ 192 (317)
T 3o53_A 128 ANNK-ITMLRD--LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY-DV----------KGQVVFAK 192 (317)
T ss_dssp CSSC-CCSGGG--BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCC-EE----------ECCCCCTT
T ss_pred CCCC-CCCccc--hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCc-cc----------cccccccc
Confidence 6553 222211 12345677777777764 4555555444445778888888776532 11 11334778
Q ss_pred cceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCC
Q 047829 281 LRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLE 360 (407)
Q Consensus 281 L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 360 (407)
|+.|++++ ..++.++.. +. .+++|+.|+++++ .++.+|..+..+++|+.|++++++-.... ...+...++.|+
T Consensus 193 L~~L~Ls~-N~l~~l~~~-~~---~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~-~~~~~~~~~~L~ 265 (317)
T 3o53_A 193 LKTLDLSS-NKLAFMGPE-FQ---SAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGT-LRDFFSKNQRVQ 265 (317)
T ss_dssp CCEEECCS-SCCCEECGG-GG---GGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHH-HHHHHHTCHHHH
T ss_pred CCEEECCC-CcCCcchhh-hc---ccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcC-HHHHHhccccce
Confidence 88888888 456666655 32 3788999999886 46678877788889999999885433132 234556677777
Q ss_pred EEEEecccchhhh
Q 047829 361 RMKITDCKMMEEI 373 (407)
Q Consensus 361 ~L~i~~c~~l~~~ 373 (407)
.+++.++..++..
T Consensus 266 ~l~l~~~~~l~~~ 278 (317)
T 3o53_A 266 TVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHHHSS
T ss_pred EEECCCchhccCC
Confidence 7777766555443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=139.73 Aligned_cols=226 Identities=15% Similarity=0.087 Sum_probs=151.2
Q ss_pred CCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcccc
Q 047829 105 RDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184 (407)
Q Consensus 105 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (407)
+++++|+++++. ++...... | ..+++|+.|++++|... .++ ...+..+++|+.|++++|. +..++...
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n~i~-~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~----- 142 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADT-F--RHLHHLEVLQLGRNSIR-QIE-VGAFNGLASLNTLELFDNW-LTVIPSGA----- 142 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTT-T--TTCTTCCEEECCSSCCC-EEC-TTTTTTCTTCCEEECCSSC-CSBCCTTT-----
T ss_pred CCccEEECcCCc-CceECHHH-c--CCCCCCCEEECCCCccC-CcC-hhhccCcccCCEEECCCCc-CCccChhh-----
Confidence 578999998876 55443332 3 34788999999887554 333 2447788899999998864 44332110
Q ss_pred ccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhh
Q 047829 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLV 264 (407)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 264 (407)
+ ..+++|++|+++++. +..++. ..+..+++|+.|++.+|+.+..++... +..+++|++|+++++..- .+
T Consensus 143 ---~-~~l~~L~~L~L~~N~-l~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l~-~~-- 211 (452)
T 3zyi_A 143 ---F-EYLSKLRELWLRNNP-IESIPS--YAFNRVPSLMRLDLGELKKLEYISEGA-FEGLFNLKYLNLGMCNIK-DM-- 211 (452)
T ss_dssp ---S-SSCTTCCEEECCSCC-CCEECT--TTTTTCTTCCEEECCCCTTCCEECTTT-TTTCTTCCEEECTTSCCS-SC--
T ss_pred ---h-cccCCCCEEECCCCC-cceeCH--hHHhcCCcccEEeCCCCCCccccChhh-ccCCCCCCEEECCCCccc-cc--
Confidence 1 135788899888763 444332 235578889999998888887776544 345888888888877532 11
Q ss_pred ccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCc
Q 047829 265 ADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGL 344 (407)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l 344 (407)
+....+++|+.|++++ +.+..++...+.. +++|+.|+++++......+..+..+++|++|+++++ .+
T Consensus 212 --------~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l 278 (452)
T 3zyi_A 212 --------PNLTPLVGLEELEMSG-NHFPEIRPGSFHG---LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NL 278 (452)
T ss_dssp --------CCCTTCTTCCEEECTT-SCCSEECGGGGTT---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred --------ccccccccccEEECcC-CcCcccCcccccC---ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cC
Confidence 2255678888888888 4566665555544 788888888887543334455677888888888874 66
Q ss_pred ccccCchhhhccccCCEEEEecc
Q 047829 345 INLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 345 ~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
..+++ .....+++|+.|++.++
T Consensus 279 ~~~~~-~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 279 SSLPH-DLFTPLRYLVELHLHHN 300 (452)
T ss_dssp SCCCT-TSSTTCTTCCEEECCSS
T ss_pred CccCh-HHhccccCCCEEEccCC
Confidence 66533 34556788888888765
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=139.52 Aligned_cols=226 Identities=14% Similarity=0.095 Sum_probs=156.6
Q ss_pred CCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcccc
Q 047829 105 RDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184 (407)
Q Consensus 105 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (407)
+++++|+++++. ++...... | ..+++|+.|++++|... .+ +...+..+++|+.|++++| .++.++...
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~-~--~~l~~L~~L~Ls~n~i~-~i-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~----- 131 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNS-F--KHLRHLEILQLSRNHIR-TI-EIGAFNGLANLNTLELFDN-RLTTIPNGA----- 131 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTT-T--SSCSSCCEEECCSSCCC-EE-CGGGGTTCSSCCEEECCSS-CCSSCCTTT-----
T ss_pred CCCcEEEccCCc-CCeeCHHH-h--hCCCCCCEEECCCCcCC-cc-ChhhccCCccCCEEECCCC-cCCeeCHhH-----
Confidence 678999999876 55544333 3 34789999999987654 33 3345788999999999986 344433210
Q ss_pred ccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhh
Q 047829 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLV 264 (407)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 264 (407)
+ ..+++|++|+++++. +..+.. ..+..+++|+.|++.+++.+..+++.. +..+++|++|+++++..- .+
T Consensus 132 ---~-~~l~~L~~L~L~~N~-i~~~~~--~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l~~L~~L~L~~n~l~-~~-- 200 (440)
T 3zyj_A 132 ---F-VYLSKLKELWLRNNP-IESIPS--YAFNRIPSLRRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLR-EI-- 200 (440)
T ss_dssp ---S-CSCSSCCEEECCSCC-CCEECT--TTTTTCTTCCEEECCCCTTCCEECTTT-TTTCSSCCEEECTTSCCS-SC--
T ss_pred ---h-hccccCceeeCCCCc-ccccCH--HHhhhCcccCEeCCCCCCCcceeCcch-hhcccccCeecCCCCcCc-cc--
Confidence 1 135889999998764 444332 235578899999999888888776544 445889999999887532 21
Q ss_pred ccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCc
Q 047829 265 ADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGL 344 (407)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l 344 (407)
+....+++|+.|+++++ .++.++...+.. +++|+.|++.++..-...+..+..+++|++|++++ +.+
T Consensus 201 --------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l 267 (440)
T 3zyj_A 201 --------PNLTPLIKLDELDLSGN-HLSAIRPGSFQG---LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNL 267 (440)
T ss_dssp --------CCCTTCSSCCEEECTTS-CCCEECTTTTTT---CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCC
T ss_pred --------cccCCCcccCEEECCCC-ccCccChhhhcc---CccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCC
Confidence 22566789999999984 666666655554 88899999988754333344567788999999988 466
Q ss_pred ccccCchhhhccccCCEEEEecc
Q 047829 345 INLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 345 ~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
..+++ .....+++|+.|++.++
T Consensus 268 ~~~~~-~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 268 TLLPH-DLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CCCCT-TTTSSCTTCCEEECCSS
T ss_pred CccCh-hHhccccCCCEEEcCCC
Confidence 66633 44567788999988765
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-14 Score=136.86 Aligned_cols=245 Identities=17% Similarity=0.150 Sum_probs=175.0
Q ss_pred CccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHH-HhhcCCCCccEEEeccCCCcceecc
Q 047829 45 SLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCY-KEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 45 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
..+.++.++. .++.+|..+. +++++|++.++ .+..++ ..+..+++|++|+++++. +.....
T Consensus 44 ~~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n--------------~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~ 105 (440)
T 3zyj_A 44 QFSKVICVRK-NLREVPDGIS--TNTRLLNLHEN--------------QIQIIKVNSFKHLRHLEILQLSRNH-IRTIEI 105 (440)
T ss_dssp TSCEEECCSC-CCSSCCSCCC--TTCSEEECCSC--------------CCCEECTTTTSSCSSCCEEECCSSC-CCEECG
T ss_pred CCCEEEeCCC-CcCcCCCCCC--CCCcEEEccCC--------------cCCeeCHHHhhCCCCCCEEECCCCc-CCccCh
Confidence 4566776665 7888997654 68999999651 111122 456788999999999986 554433
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccc
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDL 203 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 203 (407)
.. | ..+++|+.|++++|... .++ ...+..+++|++|++++|. +..++... + ..+++|+.|++.++
T Consensus 106 ~~-~--~~l~~L~~L~L~~n~l~-~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~--------~-~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 106 GA-F--NGLANLNTLELFDNRLT-TIP-NGAFVYLSKLKELWLRNNP-IESIPSYA--------F-NRIPSLRRLDLGEL 170 (440)
T ss_dssp GG-G--TTCSSCCEEECCSSCCS-SCC-TTTSCSCSSCCEEECCSCC-CCEECTTT--------T-TTCTTCCEEECCCC
T ss_pred hh-c--cCCccCCEEECCCCcCC-eeC-HhHhhccccCceeeCCCCc-ccccCHHH--------h-hhCcccCEeCCCCC
Confidence 22 3 34799999999998554 433 3457889999999999874 44443211 1 13589999999998
Q ss_pred ccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcce
Q 047829 204 PKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRF 283 (407)
Q Consensus 204 ~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~ 283 (407)
..+..+... .+..+++|+.|++.++ +++.++. ...+++|+.|+++++.. ..+.+ ..+..+++|+.
T Consensus 171 ~~l~~i~~~--~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l-~~~~~--------~~~~~l~~L~~ 235 (440)
T 3zyj_A 171 KRLSYISEG--AFEGLSNLRYLNLAMC-NLREIPN---LTPLIKLDELDLSGNHL-SAIRP--------GSFQGLMHLQK 235 (440)
T ss_dssp TTCCEECTT--TTTTCSSCCEEECTTS-CCSSCCC---CTTCSSCCEEECTTSCC-CEECT--------TTTTTCTTCCE
T ss_pred CCcceeCcc--hhhcccccCeecCCCC-cCccccc---cCCCcccCEEECCCCcc-CccCh--------hhhccCccCCE
Confidence 887766432 3567899999999986 5666643 34589999999998853 32211 12567899999
Q ss_pred EecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCc
Q 047829 284 LELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCH 342 (407)
Q Consensus 284 L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 342 (407)
|++++ +.+..++...+.. +++|+.|+++++. ++.++. .+..+++|+.|++++++
T Consensus 236 L~L~~-n~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 236 LWMIQ-SQIQVIERNAFDN---LQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTT-CCCCEECTTSSTT---CTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EECCC-CceeEEChhhhcC---CCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 99998 4677777666654 8999999999974 566654 45778999999999854
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.5e-16 Score=141.64 Aligned_cols=193 Identities=11% Similarity=0.015 Sum_probs=121.9
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.+++|+.|+++++ +++..+... ...+++|++|++++| .+..++. +..+++|++|++.++. +.
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~--------------l~ 93 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY--------------VQ 93 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSE--------------EE
T ss_pred cCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCc--------------cc
Confidence 3568999999996 576665432 457899999999999 6666654 7889999999996411 11
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccccee
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEV 175 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 175 (407)
.+...++|++|+++++. +..... ..+++|+.|.+.+|.... ++ ...+..+++|+.|++++|. +..+
T Consensus 94 ----~l~~~~~L~~L~l~~n~-l~~~~~------~~~~~L~~L~l~~N~l~~-~~-~~~~~~l~~L~~L~Ls~N~-l~~~ 159 (317)
T 3o53_A 94 ----ELLVGPSIETLHAANNN-ISRVSC------SRGQGKKNIYLANNKITM-LR-DLDEGCRSRVQYLDLKLNE-IDTV 159 (317)
T ss_dssp ----EEEECTTCCEEECCSSC-CSEEEE------CCCSSCEEEECCSSCCCS-GG-GBCTGGGSSEEEEECTTSC-CCEE
T ss_pred ----cccCCCCcCEEECCCCc-cCCcCc------cccCCCCEEECCCCCCCC-cc-chhhhccCCCCEEECCCCC-CCcc
Confidence 11233789999999876 444332 336889999999876543 22 2346778899999998864 3333
Q ss_pred eccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 176 FHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
.... +...+++|+.|+++++. +..+.. ...+++|+.|+++++ .++.+++. ...+++|+.|++++
T Consensus 160 ~~~~--------~~~~l~~L~~L~L~~N~-l~~~~~----~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 160 NFAE--------LAASSDTLEHLNLQYNF-IYDVKG----QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRN 223 (317)
T ss_dssp EGGG--------GGGGTTTCCEEECTTSC-CCEEEC----CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTT
T ss_pred cHHH--------HhhccCcCCEEECCCCc-Cccccc----ccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcC
Confidence 2111 00124778888887763 443321 123566777777664 44444332 22345555555554
Q ss_pred c
Q 047829 256 L 256 (407)
Q Consensus 256 ~ 256 (407)
+
T Consensus 224 N 224 (317)
T 3o53_A 224 N 224 (317)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-14 Score=130.83 Aligned_cols=229 Identities=16% Similarity=0.106 Sum_probs=126.0
Q ss_pred CCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcccc
Q 047829 105 RDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184 (407)
Q Consensus 105 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (407)
++|++|+++++. ++..+... + ..+++|+.|++.+|...........+..+++|++|++++|. +..++..
T Consensus 28 ~~l~~L~L~~n~-l~~i~~~~-~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~------ 96 (306)
T 2z66_A 28 SSATRLELESNK-LQSLPHGV-F--DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN------ 96 (306)
T ss_dssp TTCCEEECCSSC-CCCCCTTT-T--TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEE------
T ss_pred CCCCEEECCCCc-cCccCHhH-h--hccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhh------
Confidence 567888887765 44333222 2 23677888888776543210011234567778888887764 3332211
Q ss_pred ccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhh
Q 047829 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLV 264 (407)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 264 (407)
+. .+++|++|++.++. +..+.. ...+..+++|+.|+++++ .+....+.. ...+++|++|+++++.......+
T Consensus 97 ---~~-~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 97 ---FL-GLEQLEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHT-HTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp ---EE-TCTTCCEEECTTSE-EESSTT-TTTTTTCTTCCEEECTTS-CCEECSTTT-TTTCTTCCEEECTTCEEGGGEEC
T ss_pred ---cC-CCCCCCEEECCCCc-cccccc-chhhhhccCCCEEECCCC-cCCccchhh-cccCcCCCEEECCCCccccccch
Confidence 11 24777888777653 333221 112446677788877765 344443332 33467777777777653321111
Q ss_pred ccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcC
Q 047829 265 ADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHG 343 (407)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~ 343 (407)
.....+++|+.|+++++ .++.++...+.. +++|+.|+++++. +..++. .+..+++|++|+++++ .
T Consensus 169 --------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~ 234 (306)
T 2z66_A 169 --------DIFTELRNLTFLDLSQC-QLEQLSPTAFNS---LSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN-H 234 (306)
T ss_dssp --------SCCTTCTTCCEEECTTS-CCCEECTTTTTT---CTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS-C
T ss_pred --------hHHhhCcCCCEEECCCC-CcCCcCHHHhcC---CCCCCEEECCCCc-cCccChhhccCcccCCEeECCCC-C
Confidence 12445677777777773 455554444433 6777777777764 333332 4556677777777764 4
Q ss_pred cccccCchhhhcc-ccCCEEEEecc
Q 047829 344 LINLLTLSTSESL-VNLERMKITDC 367 (407)
Q Consensus 344 l~~~~~~~~~~~l-~~L~~L~i~~c 367 (407)
+....+.. ...+ ++|+.|+++++
T Consensus 235 l~~~~~~~-~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 235 IMTSKKQE-LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCBCSSSS-CCCCCTTCCEEECTTC
T ss_pred CcccCHHH-HHhhhccCCEEEccCC
Confidence 44443322 2234 47777777665
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=135.45 Aligned_cols=255 Identities=12% Similarity=0.079 Sum_probs=128.3
Q ss_pred CCccEEeecCCCccccccc-cccCCCCcceeEEEeecccccccccCcchhhHHHH-HHhhcCCCCccEEEeccCCCccee
Q 047829 44 PSLERVSVTFCPDMKTFSQ-GILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC-YKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
++|++|+++++ .++.+|. .+..+++|++|++.++ .+..+ +..+..+++|++|+++++. ++..
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n--------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 115 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN--------------GINTIEEDSFSSLGSLEHLDLSYNY-LSNL 115 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS--------------CCCEECTTTTTTCTTCCEEECCSSC-CSSC
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC--------------ccCccCHhhcCCCCCCCEEECCCCc-CCcC
Confidence 46666666666 4555554 4555666666666331 11111 1234455666666666654 2222
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLI 201 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (407)
+... + ..+++|+.|++++|... .++....+..+++|+.|++++|+.+..+.... +. .+++|+.|+++
T Consensus 116 ~~~~-~--~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------~~-~l~~L~~L~l~ 182 (353)
T 2z80_A 116 SSSW-F--KPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD--------FA-GLTFLEELEID 182 (353)
T ss_dssp CHHH-H--TTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT--------TT-TCCEEEEEEEE
T ss_pred CHhH-h--CCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH--------cc-CCCCCCEEECC
Confidence 1110 1 23566666666665433 23331335566666666666664444432111 01 23566666666
Q ss_pred ccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCc
Q 047829 202 DLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQL 281 (407)
Q Consensus 202 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L 281 (407)
++. +..+. ...+..+++|++|++.++. ++.++. .+...+++|+.|+++++..-...+. ........+.+
T Consensus 183 ~n~-l~~~~--~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~------~l~~~~~~~~l 251 (353)
T 2z80_A 183 ASD-LQSYE--PKSLKSIQNVSHLILHMKQ-HILLLE-IFVDVTSSVECLELRDTDLDTFHFS------ELSTGETNSLI 251 (353)
T ss_dssp ETT-CCEEC--TTTTTTCSEEEEEEEECSC-STTHHH-HHHHHTTTEEEEEEESCBCTTCCCC------------CCCCC
T ss_pred CCC-cCccC--HHHHhccccCCeecCCCCc-cccchh-hhhhhcccccEEECCCCcccccccc------ccccccccchh
Confidence 543 22211 1123455667777776643 333322 2233466777777766543211000 00111224455
Q ss_pred ceEeccccc----ccccccccccccccccCCcCceeeccCcccccccccc-ccccccCEEEeccCcC
Q 047829 282 RFLELSRLH----KVQHLWKENAESNKVFANLKSPEISECSKLQKLVPAS-WHLENLATLKVSKCHG 343 (407)
Q Consensus 282 ~~L~L~~~~----~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~ 343 (407)
+.+++..+. .+..++.. +..+++|+.|+++++ .++.+|..+ ..+++|++|++++++-
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~----l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKL----LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHH----HHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hccccccccccCcchhhhHHH----HhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 566665531 11223322 234788999999887 466777764 7889999999988643
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-16 Score=153.41 Aligned_cols=348 Identities=13% Similarity=0.017 Sum_probs=203.2
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccc-----cccccccCCCCcceeEEEeecccccccccCcch
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMK-----TFSQGILSTPKLHKVQVIVKEEGELYHREGNLN 91 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 91 (407)
.++|+.|+++++ ++...+.......+++|++|++++|. +. .++..+..+++|++|++.++. -..
T Consensus 2 ~~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---------l~~ 70 (461)
T 1z7x_W 2 SLDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE---------LGD 70 (461)
T ss_dssp CEEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC---------CHH
T ss_pred Cccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc---------CCh
Confidence 467899999875 46555444334578999999999994 55 467777889999999995411 011
Q ss_pred hhHHHHHHhhcCCC-CccEEEeccCCCcce-----eccCCCCCccccCCceEEEEecCCCCCcCCccc----hhhccccC
Q 047829 92 STIQKCYKEMIGFR-DIWYLQLSYFPRLKE-----IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVN----LLRCLNNL 161 (407)
Q Consensus 92 ~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~-----~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~l~~L 161 (407)
..+..+...+.... +|++|+++++. +.. .... + ..+++|+.|++++|... +..... .....++|
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~--l--~~~~~L~~L~Ls~n~i~-~~~~~~l~~~l~~~~~~L 144 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSST--L--RTLPTLQELHLSDNLLG-DAGLQLLCEGLLDPQCRL 144 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHH--T--TSCTTCCEEECCSSBCH-HHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHH--H--ccCCceeEEECCCCcCc-hHHHHHHHHHHhcCCCcc
Confidence 12333444343322 79999999987 442 1111 2 34789999999998743 211111 11224579
Q ss_pred CeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCC--Ccc-ccCCCccEEeEecCCCCccccC
Q 047829 162 GWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFT--GNI-IELPMFWSLTIENCPDMETFIS 238 (407)
Q Consensus 162 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~--~~~-~~~~~L~~L~l~~c~~l~~~~~ 238 (407)
++|++++|. +..... ..+...+. .+++|++|+++++. +....... ..+ ...++|+.|++++| .++....
T Consensus 145 ~~L~L~~n~-l~~~~~----~~l~~~l~-~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~ 216 (461)
T 1z7x_W 145 EKLQLEYCS-LSAASC----EPLASVLR-AKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNC 216 (461)
T ss_dssp CEEECTTSC-CBGGGH----HHHHHHHH-HCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHH
T ss_pred eEEECCCCC-CCHHHH----HHHHHHHh-hCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHH
Confidence 999999984 222110 00001111 24899999999875 33210000 001 13569999999987 3544321
Q ss_pred ---cccccccCCCceeecccccccchhhhcccccccccc-ccccCCcceEecccccccccccccccc-cccccCCcCcee
Q 047829 239 ---NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDE-KVTFPQLRFLELSRLHKVQHLWKENAE-SNKVFANLKSPE 313 (407)
Q Consensus 239 ---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~l~~~~~~-~~~~~~~L~~L~ 313 (407)
......+++|++|++++|..-..-+.. -... ...+++|+.|++++| .++......++ .+..+++|+.|+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~-----l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAE-----LCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHH-----HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHH-----HHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEE
Confidence 112345899999999998532211000 0000 124789999999996 55542211111 123478999999
Q ss_pred eccCccccccccccc-----cccccCEEEeccCcCcccccC---chhhhccccCCEEEEecccchhhhhccccCCcccce
Q 047829 314 ISECSKLQKLVPASW-----HLENLATLKVSKCHGLINLLT---LSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDC 385 (407)
Q Consensus 314 l~~c~~l~~l~~~~~-----~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~ 385 (407)
++++.--..-+..+. ..++|++|++++|. +..... ......+++|+.|++++| .+.+..... ....+
T Consensus 291 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~---l~~~l 365 (461)
T 1z7x_W 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRE---LCQGL 365 (461)
T ss_dssp CTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHH---HHHHH
T ss_pred CCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHH---HHHHH
Confidence 998753221111111 23699999999975 443311 123345689999999999 444432000 00111
Q ss_pred e-EecccceEecCCCC
Q 047829 386 I-VFRKLEYLGLDCLP 400 (407)
Q Consensus 386 ~-~~~~L~~L~l~~cp 400 (407)
. ..++|++|++++|.
T Consensus 366 ~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCD 381 (461)
T ss_dssp TSTTCCCCEEECTTSC
T ss_pred cCCCCceEEEECCCCC
Confidence 1 15699999999984
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=130.21 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=62.4
Q ss_pred eeeeCcccccccccccccccccCCccEEeecCCCcccccc-ccccCCCCcceeEEEeecccccccccCcchhhHHHH-HH
Q 047829 22 FLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFS-QGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC-YK 99 (407)
Q Consensus 22 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~ 99 (407)
+++.++ .+++.+|.. ..++|++|+++++ .+..++ ..+..+++|++|++.++ .+..+ +.
T Consensus 15 ~~~c~~-~~l~~ip~~----~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n--------------~l~~~~~~ 74 (285)
T 1ozn_A 15 TTSCPQ-QGLQAVPVG----IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN--------------VLARIDAA 74 (285)
T ss_dssp EEECCS-SCCSSCCTT----CCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS--------------CCCEECTT
T ss_pred EEEcCc-CCcccCCcC----CCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC--------------ccceeCHh
Confidence 444444 345555443 2467788888877 555555 34566777777777431 01111 22
Q ss_pred hhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 100 EMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
.+..+++|++|+++++..+....... + ..+++|+.|++.+|.... ++ ...+..+++|++|++++|
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~-~--~~l~~L~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPAT-F--HGLGRLHTLHLDRCGLQE-LG-PGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTT-T--TTCTTCCEEECTTSCCCC-CC-TTTTTTCTTCCEEECCSS
T ss_pred hcCCccCCCEEeCCCCCCccccCHHH-h--cCCcCCCEEECCCCcCCE-EC-HhHhhCCcCCCEEECCCC
Confidence 33445566666666654333332111 1 225566666666554332 11 123455566666666554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-13 Score=126.32 Aligned_cols=244 Identities=13% Similarity=0.079 Sum_probs=162.1
Q ss_pred cEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHh-hcCCCCccEEEeccCCCccee---c
Q 047829 47 ERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKE-MIGFRDIWYLQLSYFPRLKEI---W 122 (407)
Q Consensus 47 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~---~ 122 (407)
+.++.++. .++.+|..+ .++|++|++.+ +.+..++.. +..+++|++|+++++. +... +
T Consensus 10 ~~l~c~~~-~l~~ip~~~--~~~l~~L~L~~--------------n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 71 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGI--PSSATRLELES--------------NKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCS 71 (306)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCCEEECCS--------------SCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEE
T ss_pred CEEEcCCC-CcccCCCCC--CCCCCEEECCC--------------CccCccCHhHhhccccCCEEECCCCc-cCcccCcc
Confidence 35666665 678888644 36899999964 122234443 4678999999999886 3322 1
Q ss_pred cCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccc
Q 047829 123 HGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLID 202 (407)
Q Consensus 123 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 202 (407)
... ..+++|+.|++++|... .++. .+..+++|++|++++|. +..++... .+ ..+++|+.|++++
T Consensus 72 ~~~----~~~~~L~~L~Ls~n~i~-~l~~--~~~~l~~L~~L~l~~n~-l~~~~~~~-------~~-~~l~~L~~L~l~~ 135 (306)
T 2z66_A 72 QSD----FGTTSLKYLDLSFNGVI-TMSS--NFLGLEQLEHLDFQHSN-LKQMSEFS-------VF-LSLRNLIYLDISH 135 (306)
T ss_dssp HHH----HSCSCCCEEECCSCSEE-EEEE--EEETCTTCCEEECTTSE-EESSTTTT-------TT-TTCTTCCEEECTT
T ss_pred ccc----ccccccCEEECCCCccc-cChh--hcCCCCCCCEEECCCCc-ccccccch-------hh-hhccCCCEEECCC
Confidence 111 23689999999998654 3333 26789999999999864 22222111 11 1358999999988
Q ss_pred cccccccccCCCccccCCCccEEeEecCCCCcc-ccCcccccccCCCceeecccccccchhhhccccccccccccccCCc
Q 047829 203 LPKLKRFCNFTGNIIELPMFWSLTIENCPDMET-FISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQL 281 (407)
Q Consensus 203 ~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L 281 (407)
+. +..+. ...+..+++|+.|++.++. ++. ..+.. ...+++|++|+++++.... +. ...+..+++|
T Consensus 136 n~-l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~Ls~n~l~~-~~--------~~~~~~l~~L 201 (306)
T 2z66_A 136 TH-TRVAF--NGIFNGLSSLEVLKMAGNS-FQENFLPDI-FTELRNLTFLDLSQCQLEQ-LS--------PTAFNSLSSL 201 (306)
T ss_dssp SC-CEECS--TTTTTTCTTCCEEECTTCE-EGGGEECSC-CTTCTTCCEEECTTSCCCE-EC--------TTTTTTCTTC
T ss_pred Cc-CCccc--hhhcccCcCCCEEECCCCc-cccccchhH-HhhCcCCCEEECCCCCcCC-cC--------HHHhcCCCCC
Confidence 74 32221 1234568899999998863 443 33333 4458999999998875332 21 1125668899
Q ss_pred ceEecccccccccccccccccccccCCcCceeeccCcccccccccccccc-ccCEEEeccCc
Q 047829 282 RFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLE-NLATLKVSKCH 342 (407)
Q Consensus 282 ~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~L~l~~c~ 342 (407)
+.|+++++ .++.++...+.. +++|+.|+++++......+..+..++ +|++|++++++
T Consensus 202 ~~L~L~~N-~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 202 QVLNMSHN-NFFSLDTFPYKC---LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CEEECTTS-CCSBCCSGGGTT---CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CEEECCCC-ccCccChhhccC---cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999984 566666554443 88999999999865555566677774 99999999854
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-13 Score=123.01 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=71.5
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
++|++|+++++..+..+.. ..+..+++|++|++.++ .++..++.. ...+++|++|+++++... .+..
T Consensus 80 ~~L~~L~l~~n~~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~-------- 146 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDP--ATFHGLGRLHTLHLDRC-GLQELGPGL-FRGLAALQYLYLQDNALQ-ALPD-------- 146 (285)
T ss_dssp TTCCEEECCSCTTCCCCCT--TTTTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECCSSCCC-CCCT--------
T ss_pred cCCCEEeCCCCCCccccCH--HHhcCCcCCCEEECCCC-cCCEECHhH-hhCCcCCCEEECCCCccc-ccCH--------
Confidence 4555555554433333211 11334455555555543 233332222 223555555555554321 1100
Q ss_pred ccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchh
Q 047829 273 DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLST 352 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 352 (407)
..+..+++|+.|+++++ .++.++...+.. +++|+.|+++++......|..+..+++|++|+++++ .+..++ ...
T Consensus 147 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~ 220 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGN-RISSVPERAFRG---LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALP-TEA 220 (285)
T ss_dssp TTTTTCTTCCEEECCSS-CCCEECTTTTTT---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC-HHH
T ss_pred hHhccCCCccEEECCCC-cccccCHHHhcC---ccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCC-HHH
Confidence 01334556666666652 444444443332 556666666665432233445555666666666653 444442 223
Q ss_pred hhccccCCEEEEecc
Q 047829 353 SESLVNLERMKITDC 367 (407)
Q Consensus 353 ~~~l~~L~~L~i~~c 367 (407)
...+++|+.|+++++
T Consensus 221 ~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 221 LAPLRALQYLRLNDN 235 (285)
T ss_dssp HTTCTTCCEEECCSS
T ss_pred cccCcccCEEeccCC
Confidence 345566666666554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-15 Score=137.12 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=52.0
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceecc
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
+.+++|+++++ .+...+..+..+++|++|++.++. + .-..++..+..+++|++|+++++. +.....
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~----------l--~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~ 135 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSV----------I--EVSTLHGILSQCSKLQNLSLEGLR-LSDPIV 135 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCE----------E--CHHHHHHHHTTBCCCSEEECTTCB-CCHHHH
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCC----------c--CHHHHHHHHhhCCCCCEEeCcCcc-cCHHHH
Confidence 66666666666 444444445566666666663310 0 011244445555666666666653 221111
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
.. + ..+++|+.|++.+|..+++......+..+++|++|++++|
T Consensus 136 ~~-l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 136 NT-L--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp HH-H--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred HH-H--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 00 1 1245666666666543332111122455556666666555
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-14 Score=140.64 Aligned_cols=192 Identities=11% Similarity=0.011 Sum_probs=91.3
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+++|+.|+++++ .+...+... ...+++|++|++++| .+...+. +..+++|++|++.++. +..
T Consensus 33 ~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~--------------l~~ 94 (487)
T 3oja_A 33 AWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY--------------VQE 94 (487)
T ss_dssp GGGCCEEECCSS-CCCCCCGGG-GTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSE--------------EEE
T ss_pred CCCccEEEeeCC-cCCCCCHHH-HhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCc--------------CCC
Confidence 346667777664 455444322 345667777777766 4444432 5666667776664310 000
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
+...++|++|+++++. +...+. ..+++|+.|++.+|..... ++ ..++.+++|+.|++++|. +..+.
T Consensus 95 ----l~~~~~L~~L~L~~N~-l~~~~~------~~l~~L~~L~L~~N~l~~~-~~-~~~~~l~~L~~L~Ls~N~-l~~~~ 160 (487)
T 3oja_A 95 ----LLVGPSIETLHAANNN-ISRVSC------SRGQGKKNIYLANNKITML-RD-LDEGCRSRVQYLDLKLNE-IDTVN 160 (487)
T ss_dssp ----EEECTTCCEEECCSSC-CCCEEE------CCCSSCEEEECCSSCCCSG-GG-BCGGGGSSEEEEECTTSC-CCEEE
T ss_pred ----CCCCCCcCEEECcCCc-CCCCCc------cccCCCCEEECCCCCCCCC-Cc-hhhcCCCCCCEEECCCCC-CCCcC
Confidence 1122566666666655 332222 2256666666666554332 11 224556666666666653 22221
Q ss_pred ccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccc
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKL 256 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 256 (407)
... +...+++|+.|+++++. +..++. ...+++|+.|+++++ .++++++. ...+++|+.|+++++
T Consensus 161 ~~~--------l~~~l~~L~~L~Ls~N~-l~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 161 FAE--------LAASSDTLEHLNLQYNF-IYDVKG----QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN 224 (487)
T ss_dssp GGG--------GGGGTTTCCEEECTTSC-CCEEEC----CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS
T ss_pred hHH--------HhhhCCcccEEecCCCc-cccccc----cccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC
Confidence 100 00013566666666543 322211 113455555555543 34444332 223444555555443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=120.22 Aligned_cols=104 Identities=9% Similarity=0.054 Sum_probs=58.5
Q ss_pred eEecccccccccccccccccccccCCcC-ceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhcc-ccCC
Q 047829 283 FLELSRLHKVQHLWKENAESNKVFANLK-SPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESL-VNLE 360 (407)
Q Consensus 283 ~L~L~~~~~l~~l~~~~~~~~~~~~~L~-~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~ 360 (407)
.|++++++.++.++...+.. +++|+ .++++++. ++.+|......++|++|++++++.+..+++ .....+ ++|+
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~---l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~ 208 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQG---LCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPS 208 (239)
T ss_dssp EEEEESCTTCCEECTTTTTT---TBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCS
T ss_pred EEECCCCcchhhcCcccccc---hhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCc
Confidence 66666644566666554443 66677 77776543 445554433336777777776544655533 233455 6777
Q ss_pred EEEEecccchhhhhccccCCcccceeEecccceEecCCCCCc
Q 047829 361 RMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLDCLPSL 402 (407)
Q Consensus 361 ~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~~cp~l 402 (407)
.|+++++ .+..++ .. .+++|+.|++++++.|
T Consensus 209 ~L~l~~N-~l~~l~--------~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 209 LLDVSQT-SVTALP--------SK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp EEECTTC-CCCCCC--------CT--TCTTCSEEECTTC---
T ss_pred EEECCCC-ccccCC--------hh--HhccCceeeccCccCC
Confidence 7777765 344443 11 4667777777776543
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.5e-13 Score=129.85 Aligned_cols=237 Identities=16% Similarity=0.123 Sum_probs=163.0
Q ss_pred CCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcc
Q 047829 103 GFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELS 182 (407)
Q Consensus 103 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 182 (407)
.+++|++|+++++. +...+... | ..+++|+.|++++|.... .++ +..+++|+.|++++|. +..++
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~-~--~~l~~L~~L~Ls~N~l~~-~~~---l~~l~~L~~L~Ls~N~-l~~l~------ 96 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAAD-L--APFTKLELLNLSSNVLYE-TLD---LESLSTLRTLDLNNNY-VQELL------ 96 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGG-G--TTCTTCCEEECTTSCCEE-EEE---CTTCTTCCEEECCSSE-EEEEE------
T ss_pred cCCCccEEEeeCCc-CCCCCHHH-H--hCCCCCCEEEeeCCCCCC-Ccc---cccCCCCCEEEecCCc-CCCCC------
Confidence 44589999999986 44433222 2 347899999999987543 223 6889999999999874 44433
Q ss_pred ccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchh
Q 047829 183 AKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENL 262 (407)
Q Consensus 183 ~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 262 (407)
..++|+.|+++++. +..+.. ..+++|+.|++.++ .+++.++..+ ..+++|+.|+++++......
T Consensus 97 --------~~~~L~~L~L~~N~-l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 97 --------VGPSIETLHAANNN-ISRVSC-----SRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp --------ECTTCCEEECCSSC-CCCEEE-----CCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTSCCCEEE
T ss_pred --------CCCCcCEEECcCCc-CCCCCc-----cccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCCCCCCcC
Confidence 13789999999864 443322 24789999999885 5666655443 45899999999887543321
Q ss_pred hhcccccccccccc-ccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 263 LVADQIQHLFDEKV-TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 263 ~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
+. .+. .+++|+.|+++++ .++.++... .+++|+.|+++++. +..+|+.+..+++|+.|++++
T Consensus 161 ~~---------~l~~~l~~L~~L~Ls~N-~l~~~~~~~-----~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~- 223 (487)
T 3oja_A 161 FA---------ELAASSDTLEHLNLQYN-FIYDVKGQV-----VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRN- 223 (487)
T ss_dssp GG---------GGGGGTTTCCEEECTTS-CCCEEECCC-----CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTT-
T ss_pred hH---------HHhhhCCcccEEecCCC-ccccccccc-----cCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecC-
Confidence 11 133 5789999999984 466654432 37899999999874 667777788899999999998
Q ss_pred cCcccccCchhhhccccCCEEEEecccch-hhhhccccCCcccceeEecccceEecC
Q 047829 342 HGLINLLTLSTSESLVNLERMKITDCKMM-EEIIQSQVGEEAEDCIVFRKLEYLGLD 397 (407)
Q Consensus 342 ~~l~~~~~~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~g~~~~~~~~~~~L~~L~l~ 397 (407)
+.+..++. ....+++|+.|++.+++-. ..++ ..+..++.|+.+++.
T Consensus 224 N~l~~lp~--~l~~l~~L~~L~l~~N~l~c~~~~--------~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 224 NKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLR--------DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SCCCEECT--TCCCCTTCCEEECTTCCBCHHHHH--------HHHTTCHHHHHHHHH
T ss_pred CcCcccch--hhccCCCCCEEEcCCCCCcCcchH--------HHHHhCCCCcEEecc
Confidence 45666532 2456789999999988543 2232 233445666666553
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.1e-13 Score=116.36 Aligned_cols=84 Identities=13% Similarity=0.021 Sum_probs=50.8
Q ss_pred ccccCCcc-eEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccc-cccCEEEeccCcCcccccCch
Q 047829 275 KVTFPQLR-FLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHL-ENLATLKVSKCHGLINLLTLS 351 (407)
Q Consensus 275 ~~~l~~L~-~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~-~~L~~L~l~~c~~l~~~~~~~ 351 (407)
+..+++|+ .|++++ ..++.++...+. .++|+.|++++++.++.+++ .+..+ ++|++|++++ +.+..+++.
T Consensus 151 ~~~l~~L~~~L~l~~-n~l~~i~~~~~~----~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~- 223 (239)
T 2xwt_C 151 FQGLCNETLTLKLYN-NGFTSVQGYAFN----GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK- 223 (239)
T ss_dssp TTTTBSSEEEEECCS-CCCCEECTTTTT----TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-
T ss_pred ccchhcceeEEEcCC-CCCcccCHhhcC----CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-
Confidence 33456666 677666 345556554433 35677777777655666643 34556 7788888877 456555322
Q ss_pred hhhccccCCEEEEeccc
Q 047829 352 TSESLVNLERMKITDCK 368 (407)
Q Consensus 352 ~~~~l~~L~~L~i~~c~ 368 (407)
.+++|+.|.+.++.
T Consensus 224 ---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 ---GLEHLKELIARNTW 237 (239)
T ss_dssp ---TCTTCSEEECTTC-
T ss_pred ---HhccCceeeccCcc
Confidence 45677777777664
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-12 Score=119.36 Aligned_cols=240 Identities=15% Similarity=0.138 Sum_probs=139.7
Q ss_pred EeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHH-hhcCCCCccEEEeccCCCcceeccCCCC
Q 047829 49 VSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYK-EMIGFRDIWYLQLSYFPRLKEIWHGQAL 127 (407)
Q Consensus 49 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 127 (407)
++-++. .++.+|..+ .+++++|++.+ +.++.++. .+.++++|++|+++++.-++..+... |
T Consensus 14 v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~--------------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-f 75 (350)
T 4ay9_X 14 FLCQES-KVTEIPSDL--PRNAIELRFVL--------------TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV-F 75 (350)
T ss_dssp EEEEST-TCCSCCTTC--CTTCSEEEEES--------------CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS-B
T ss_pred EEecCC-CCCccCcCc--CCCCCEEEccC--------------CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH-h
Confidence 343433 555666543 24566666643 22223333 23556667777777666444433322 3
Q ss_pred CccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccc
Q 047829 128 PVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLK 207 (407)
Q Consensus 128 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 207 (407)
..+++++++.+.++..+..+++ +.+..+++|+.|++++|. +..++..... ...++..|.+.++..+.
T Consensus 76 --~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~-l~~~~~~~~~---------~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 76 --SNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTG-IKHLPDVHKI---------HSLQKVLLDIQDNINIH 142 (350)
T ss_dssp --CSCTTCCEEEEEEETTCCEECT-TSBCCCTTCCEEEEEEEC-CSSCCCCTTC---------CBSSCEEEEEESCTTCC
T ss_pred --hcchhhhhhhcccCCcccccCc-hhhhhccccccccccccc-cccCCchhhc---------ccchhhhhhhccccccc
Confidence 2356777766665556655543 446788899999998763 3333321111 12456667776666666
Q ss_pred ccccCCCccccC-CCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEec
Q 047829 208 RFCNFTGNIIEL-PMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLEL 286 (407)
Q Consensus 208 ~i~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 286 (407)
.++... +... ..++.|++.+ ++++.+++..+ ...+|+++.+.++..++.+... .+..+++|+.|++
T Consensus 143 ~l~~~~--f~~~~~~l~~L~L~~-N~i~~i~~~~f--~~~~L~~l~l~~~n~l~~i~~~--------~f~~l~~L~~LdL 209 (350)
T 4ay9_X 143 TIERNS--FVGLSFESVILWLNK-NGIQEIHNSAF--NGTQLDELNLSDNNNLEELPND--------VFHGASGPVILDI 209 (350)
T ss_dssp EECTTS--STTSBSSCEEEECCS-SCCCEECTTSS--TTEEEEEEECTTCTTCCCCCTT--------TTTTEECCSEEEC
T ss_pred cccccc--hhhcchhhhhhcccc-ccccCCChhhc--cccchhHHhhccCCcccCCCHH--------HhccCcccchhhc
Confidence 554322 2222 3577777766 45666655432 2456777777776666654322 1456778888888
Q ss_pred ccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEecc
Q 047829 287 SRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSK 340 (407)
Q Consensus 287 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~ 340 (407)
++ +.++.+|... +.+|+.|.+.++.+++.+|. +..+++|+.+++.+
T Consensus 210 s~-N~l~~lp~~~------~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 210 SR-TRIHSLPSYG------LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TT-SCCCCCCSSS------CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred CC-CCcCccChhh------hccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 87 4677777653 45677777777777777774 66778888887754
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=128.48 Aligned_cols=235 Identities=13% Similarity=0.060 Sum_probs=138.5
Q ss_pred CCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcccc
Q 047829 105 RDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184 (407)
Q Consensus 105 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (407)
+++++|+++++. +...+... ..+++|+.|++++|..... .....+..+++|++|++++|.-....+.
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~l~~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~------- 136 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSVIEVS-TLHGILSQCSKLQNLSLEGLRLSDPIVN------- 136 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCEECHH-HHHHHHTTBCCCSEEECTTCBCCHHHHH-------
T ss_pred ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCCcCHH-HHHHHHhhCCCCCEEeCcCcccCHHHHH-------
Confidence 456666666543 22222222 3368888888888763221 1123467788888888888742111111
Q ss_pred ccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccC-CCceeeccccc-ccch-
Q 047829 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHM-TADNKEPQKLK-SEEN- 261 (407)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~~~-~l~~- 261 (407)
.+. .+++|++|+++++..+.... ....+..+++|++|++.+|..++..........++ +|++|++++|. .+.+
T Consensus 137 --~l~-~~~~L~~L~L~~~~~l~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 137 --TLA-KNSNLVRLNLSGCSGFSEFA-LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp --HHT-TCTTCSEEECTTCBSCCHHH-HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred --HHh-cCCCCCEEECCCCCCCCHHH-HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 111 25888888888876554310 01124467889999998886776543223355688 99999998885 3431
Q ss_pred hhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccc-ccccccccccCEEEecc
Q 047829 262 LLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKL-VPASWHLENLATLKVSK 340 (407)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~ 340 (407)
.++. ....+++|+.|++++|..++......+. .+++|+.|++++|..+... ...+..+++|++|++++
T Consensus 213 ~l~~--------~~~~~~~L~~L~l~~~~~l~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 213 DLST--------LVRRCPNLVHLDLSDSVMLKNDCFQEFF---QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp HHHH--------HHHHCTTCSEEECTTCTTCCGGGGGGGG---GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred HHHH--------HHhhCCCCCEEeCCCCCcCCHHHHHHHh---CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 1111 1446889999999987655443333333 3789999999998743321 12456789999999998
Q ss_pred CcCcccccCchhhhcc-ccCCEEEEecccchhhhh
Q 047829 341 CHGLINLLTLSTSESL-VNLERMKITDCKMMEEII 374 (407)
Q Consensus 341 c~~l~~~~~~~~~~~l-~~L~~L~i~~c~~l~~~~ 374 (407)
| +.+. ....+ ..+..|++.++ .+..+.
T Consensus 282 ~--i~~~----~~~~l~~~l~~L~l~~n-~l~~~~ 309 (336)
T 2ast_B 282 I--VPDG----TLQLLKEALPHLQINCS-HFTTIA 309 (336)
T ss_dssp S--SCTT----CHHHHHHHSTTSEESCC-CSCCTT
T ss_pred c--cCHH----HHHHHHhhCcceEEecc-cCcccc
Confidence 7 3332 12222 24556666544 555543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=122.40 Aligned_cols=234 Identities=20% Similarity=0.179 Sum_probs=163.2
Q ss_pred HHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 95 QKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 95 ~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
+.+|..+ .+++++|+++++. ++.++.+. | ..+++|+.|++++|...+.++ .+.+.++++++++.+.+++.+..
T Consensus 22 t~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 22 TEIPSDL--PRNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp CSCCTTC--CTTCSEEEEESCC-CSEECTTS-S--TTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCE
T ss_pred CccCcCc--CCCCCEEEccCCc-CCCcCHHH-H--cCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccc
Confidence 3455444 3679999999876 66655443 4 347899999999988766443 34567888888777766667776
Q ss_pred eeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecc
Q 047829 175 VFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 254 (407)
++... + ..+++|+.|++.++ .+..+... .+....++..+++.++.++..++...+......++.|+++
T Consensus 95 l~~~~--------f-~~l~~L~~L~l~~n-~l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 95 INPEA--------F-QNLPNLQYLLISNT-GIKHLPDV--HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp ECTTS--------B-CCCTTCCEEEEEEE-CCSSCCCC--TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred cCchh--------h-hhcccccccccccc-ccccCCch--hhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 64311 1 13588999999875 34443321 1234457788888888888888766554444568888887
Q ss_pred cccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccC
Q 047829 255 KLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLA 334 (407)
Q Consensus 255 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~ 334 (407)
++.. +.+... .....+|+.+.+.+++.++.++.+.+.. +++|+.|+++++ +++.+|. ..+.+|+
T Consensus 163 ~N~i-~~i~~~---------~f~~~~L~~l~l~~~n~l~~i~~~~f~~---l~~L~~LdLs~N-~l~~lp~--~~~~~L~ 226 (350)
T 4ay9_X 163 KNGI-QEIHNS---------AFNGTQLDELNLSDNNNLEELPNDVFHG---ASGPVILDISRT-RIHSLPS--YGLENLK 226 (350)
T ss_dssp SSCC-CEECTT---------SSTTEEEEEEECTTCTTCCCCCTTTTTT---EECCSEEECTTS-CCCCCCS--SSCTTCC
T ss_pred cccc-cCCChh---------hccccchhHHhhccCCcccCCCHHHhcc---CcccchhhcCCC-CcCccCh--hhhccch
Confidence 7542 222111 3345689999999888899998877665 889999999986 5778875 4578899
Q ss_pred EEEeccCcCcccccCchhhhccccCCEEEEec
Q 047829 335 TLKVSKCHGLINLLTLSTSESLVNLERMKITD 366 (407)
Q Consensus 335 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 366 (407)
+|.+.+++.++.+++ ...+++|+.+++.+
T Consensus 227 ~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred HhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 999988888888853 45688899888865
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=112.57 Aligned_cols=200 Identities=13% Similarity=0.011 Sum_probs=135.4
Q ss_pred cCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCc
Q 047829 102 IGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEEL 181 (407)
Q Consensus 102 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 181 (407)
..++++++++++++. ++.++. ...++++.|++++|.... + ....+..+++|+.|++++|. ++.++..
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip~------~~~~~l~~L~L~~N~l~~-~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~--- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALPP------DLPKDTTILHLSENLLYT-F-SLATLMPYTRLTQLNLDRAE-LTKLQVD--- 73 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCCS------CCCTTCCEEECTTSCCSE-E-EGGGGTTCTTCCEEECTTSC-CCEEECC---
T ss_pred cccCCccEEECCCCC-CCcCCC------CCCCCCCEEEcCCCcCCc-c-CHHHhhcCCCCCEEECCCCc-cCcccCC---
Confidence 345667777776654 443332 334788899998876543 2 23457888999999998864 4444321
Q ss_pred cccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccch
Q 047829 182 SAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEEN 261 (407)
Q Consensus 182 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 261 (407)
..+++|+.|+++++ .+..++. .+..+++|+.|+++++ +++.+++.. +..+++|++|+++++..- .
T Consensus 74 --------~~l~~L~~L~Ls~N-~l~~l~~---~~~~l~~L~~L~l~~N-~l~~l~~~~-~~~l~~L~~L~L~~N~l~-~ 138 (290)
T 1p9a_G 74 --------GTLPVLGTLDLSHN-QLQSLPL---LGQTLPALTVLDVSFN-RLTSLPLGA-LRGLGELQELYLKGNELK-T 138 (290)
T ss_dssp --------SCCTTCCEEECCSS-CCSSCCC---CTTTCTTCCEEECCSS-CCCCCCSST-TTTCTTCCEEECTTSCCC-C
T ss_pred --------CCCCcCCEEECCCC-cCCcCch---hhccCCCCCEEECCCC-cCcccCHHH-HcCCCCCCEEECCCCCCC-c
Confidence 13588999999876 3444432 2456788999999874 577766544 345888999999877432 2
Q ss_pred hhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 262 LLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
+.+ ..+..+++|+.|++++ +.++.++...+.. +++|+.|+++++ .++.+|..+...++|+.++++++
T Consensus 139 ~~~--------~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~---l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 139 LPP--------GLLTPTPKLEKLSLAN-NNLTELPAGLLNG---LENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCT--------TTTTTCTTCCEEECTT-SCCSCCCTTTTTT---CTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred cCh--------hhcccccCCCEEECCC-CcCCccCHHHhcC---cCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence 211 1144578899999988 4677777765544 788999999876 46778887778888999999874
Q ss_pred c
Q 047829 342 H 342 (407)
Q Consensus 342 ~ 342 (407)
+
T Consensus 206 p 206 (290)
T 1p9a_G 206 P 206 (290)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-12 Score=115.82 Aligned_cols=54 Identities=7% Similarity=0.032 Sum_probs=27.5
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
|++|+.|+++++ +++.++. ...+++|++|++++| .+..++. +..+++|++|++.
T Consensus 40 l~~L~~L~l~~~-~i~~l~~---~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIEG---VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELS 93 (308)
T ss_dssp HHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECC
T ss_pred cCCcCEEEeeCC-CccCchh---hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEcc
Confidence 455555555554 3443321 234555555655555 4444443 4555555555554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-12 Score=115.33 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=141.0
Q ss_pred cccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccc
Q 047829 130 SFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
..+++|+.|.+.+|... .++ .+..+++|+.|++++|. +..++.+ . .+++|+.|+++++. +..+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~---~~~~l~~L~~L~L~~n~-i~~~~~~----------~-~l~~L~~L~L~~n~-l~~~ 100 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE---GVQYLNNLIGLELKDNQ-ITDLAPL----------K-NLTKITELELSGNP-LKNV 100 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT---TGGGCTTCCEEECCSSC-CCCCGGG----------T-TCCSCCEEECCSCC-CSCC
T ss_pred HHcCCcCEEEeeCCCcc-Cch---hhhccCCCCEEEccCCc-CCCChhH----------c-cCCCCCEEEccCCc-CCCc
Confidence 45889999999998553 333 37889999999999874 4443321 1 36899999999874 5543
Q ss_pred ccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccc
Q 047829 210 CNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
. .+..+++|+.|+++++ .++.+++ ...+++|++|+++++..- .+ .....+++|+.|+++++
T Consensus 101 ~----~~~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~l~-~~----------~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 101 S----AIAGLQSIKTLDLTST-QITDVTP---LAGLSNLQVLYLDLNQIT-NI----------SPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp G----GGTTCTTCCEEECTTS-CCCCCGG---GTTCTTCCEEECCSSCCC-CC----------GGGGGCTTCCEEECCSS
T ss_pred h----hhcCCCCCCEEECCCC-CCCCchh---hcCCCCCCEEECCCCccC-cC----------ccccCCCCccEEEccCC
Confidence 2 3567899999999986 4666543 456899999999887532 11 12567899999999985
Q ss_pred cccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
.+..++. +. .+++|+.|+++++. +..+++ +..+++|++|++++| .+..+++ ...+++|+.|++.+++
T Consensus 162 -~l~~~~~--l~---~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 162 -QVSDLTP--LA---NLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQT 228 (308)
T ss_dssp -CCCCCGG--GT---TCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEE
T ss_pred -cCCCChh--hc---CCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCCe
Confidence 5565554 32 38899999999874 566654 778999999999985 5666632 4678999999999984
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-13 Score=123.29 Aligned_cols=115 Identities=13% Similarity=-0.014 Sum_probs=56.8
Q ss_pred ccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 42 EFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
..++|++|+++++ .+ .+|..+... |++|++.+..- .. ...+..+..-......+++|++|+++++.--...
T Consensus 41 ~~~~L~~l~l~~n-~l-~~p~~~~~~--L~~L~L~~n~l----~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 41 GGRSLEYLLKRVD-TE-ADLGQFTDI--IKSLSLKRLTV----RA-ARIPSRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEECTTHHHHCC-TT-CCCHHHHHH--HHHCCCCEEEE----EE-EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred cCCCceeEeeccc-cc-ccHHHHHHH--Hhhcccccccc----cC-CCcCHHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 4577788888877 34 666554443 66666643110 00 0011111111112235567777777776521121
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhcc-----ccCCeeEEcccc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCL-----NNLGWLEVRNCD 170 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~ 170 (407)
+... + ...+++|+.|++++|..... + ..+..+ ++|++|++++|.
T Consensus 112 ~~~~-~-~~~l~~L~~L~Ls~N~l~~~-~--~~~~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 112 PPPL-L-EATGPDLNILNLRNVSWATR-D--AWLAELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp CCCS-S-SCCSCCCSEEEEESCBCSSS-S--SHHHHHHTTCCTTCCEEEEESCS
T ss_pred HHHH-H-HhcCCCccEEEccCCCCcch-h--HHHHHHHHhhcCCCcEEEeeCCC
Confidence 1111 1 02366777777777654432 2 224444 677777777653
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-11 Score=108.63 Aligned_cols=200 Identities=17% Similarity=0.118 Sum_probs=135.1
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF 212 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 212 (407)
.+.+.+++.++.. +.+|.. + .++++.|+++++. +..++.. .+ ..+++|++|+++++ .+..++..
T Consensus 16 ~~~~~l~~~~~~l-~~ip~~--~--~~~l~~L~l~~n~-l~~~~~~--------~~-~~l~~L~~L~l~~n-~l~~i~~~ 79 (270)
T 2o6q_A 16 NNKNSVDCSSKKL-TAIPSN--I--PADTKKLDLQSNK-LSSLPSK--------AF-HRLTKLRLLYLNDN-KLQTLPAG 79 (270)
T ss_dssp TTTTEEECTTSCC-SSCCSC--C--CTTCSEEECCSSC-CSCCCTT--------SS-SSCTTCCEEECCSS-CCSCCCTT
T ss_pred CCCCEEEccCCCC-CccCCC--C--CCCCCEEECcCCC-CCeeCHH--------Hh-cCCCCCCEEECCCC-ccCeeChh
Confidence 4678888887554 444432 2 2679999999874 4433211 11 13589999999876 34444322
Q ss_pred CCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccc
Q 047829 213 TGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKV 292 (407)
Q Consensus 213 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 292 (407)
.+..+++|++|++.++ .++.+++.. +..+++|++|+++++.... +.+ ..+..+++|+.|+++++ .+
T Consensus 80 --~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~--------~~~~~l~~L~~L~Ls~n-~l 145 (270)
T 2o6q_A 80 --IFKELKNLETLWVTDN-KLQALPIGV-FDQLVNLAELRLDRNQLKS-LPP--------RVFDSLTKLTYLSLGYN-EL 145 (270)
T ss_dssp --TTSSCTTCCEEECCSS-CCCCCCTTT-TTTCSSCCEEECCSSCCCC-CCT--------TTTTTCTTCCEEECCSS-CC
T ss_pred --hhcCCCCCCEEECCCC-cCCcCCHhH-cccccCCCEEECCCCccCe-eCH--------HHhCcCcCCCEEECCCC-cC
Confidence 2456889999999885 466665533 4458899999998865322 111 12456889999999984 67
Q ss_pred ccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 293 QHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 293 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+.++...+.. +++|+.|+++++. +..+++ .+..+++|++|+++++ .+..+++ .....+++|+.|++.+++
T Consensus 146 ~~~~~~~~~~---l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 146 QSLPKGVFDK---LTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCCTTTTTT---CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccC---CcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCH-HHhccccCCCEEEecCCC
Confidence 7777665544 8899999998874 555554 3677899999999885 6666643 345678899999997763
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-11 Score=108.72 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=36.7
Q ss_pred cccCCcceEecccccccccccccccccccccCCcC----ceeeccCccccccccccccccccCEEEeccCcCcccccCch
Q 047829 276 VTFPQLRFLELSRLHKVQHLWKENAESNKVFANLK----SPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLS 351 (407)
Q Consensus 276 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~----~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 351 (407)
..+++|+.|+++++ .++.++...+.. +++|+ .++++++. +..+++......+|++|+++++ .+..++ ..
T Consensus 146 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~---l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~ 218 (276)
T 2z62_A 146 SNLTNLEHLDLSSN-KIQSIYCTDLRV---LHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTN-QLKSVP-DG 218 (276)
T ss_dssp GGCTTCCEEECCSS-CCCEECGGGGHH---HHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSS-CCSCCC-TT
T ss_pred ccCCCCCEEECCCC-CCCcCCHHHhhh---hhhccccceeeecCCCc-ccccCccccCCCcccEEECCCC-ceeecC-Hh
Confidence 33455555555552 333443333322 33333 44554432 3344433333345566666553 344442 22
Q ss_pred hhhccccCCEEEEe
Q 047829 352 TSESLVNLERMKIT 365 (407)
Q Consensus 352 ~~~~l~~L~~L~i~ 365 (407)
....+++|+.|+++
T Consensus 219 ~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 219 IFDRLTSLQKIWLH 232 (276)
T ss_dssp TTTTCCSCCEEECC
T ss_pred HhcccccccEEEcc
Confidence 33445556666555
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=111.68 Aligned_cols=198 Identities=15% Similarity=0.066 Sum_probs=134.0
Q ss_pred cccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccc
Q 047829 130 SFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
..+++++.+.+.++. ++.++.. + .++++.|++++|. +..+.... +. .+++|+.|+++++. +..+
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip~~--~--~~~l~~L~L~~N~-l~~~~~~~--------~~-~l~~L~~L~L~~n~-l~~~ 70 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALPPD--L--PKDTTILHLSENL-LYTFSLAT--------LM-PYTRLTQLNLDRAE-LTKL 70 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCCSC--C--CTTCCEEECTTSC-CSEEEGGG--------GT-TCTTCCEEECTTSC-CCEE
T ss_pred cccCCccEEECCCCC-CCcCCCC--C--CCCCCEEEcCCCc-CCccCHHH--------hh-cCCCCCEEECCCCc-cCcc
Confidence 347889999998754 4455542 2 3689999999875 44433111 11 35899999998763 5554
Q ss_pred ccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccc
Q 047829 210 CNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
... ..+++|+.|+++++ .++.++. ....+++|+.|+++++..- .+.+ ..+..+++|+.|++++
T Consensus 71 ~~~----~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~l~~N~l~-~l~~--------~~~~~l~~L~~L~L~~- 133 (290)
T 1p9a_G 71 QVD----GTLPVLGTLDLSHN-QLQSLPL--LGQTLPALTVLDVSFNRLT-SLPL--------GALRGLGELQELYLKG- 133 (290)
T ss_dssp ECC----SCCTTCCEEECCSS-CCSSCCC--CTTTCTTCCEEECCSSCCC-CCCS--------STTTTCTTCCEEECTT-
T ss_pred cCC----CCCCcCCEEECCCC-cCCcCch--hhccCCCCCEEECCCCcCc-ccCH--------HHHcCCCCCCEEECCC-
Confidence 332 46889999999875 5665543 2345889999999877532 2211 1255678999999998
Q ss_pred cccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
+.++.++...+.. +++|+.|+++++. ++.+|.. +..+++|++|++++ +.+..++. . ....+.|+.+++.++
T Consensus 134 N~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~-~-~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 134 NELKTLPPGLLTP---TPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQE-NSLYTIPK-G-FFGSHLLPFAFLHGN 205 (290)
T ss_dssp SCCCCCCTTTTTT---CTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCS-SCCCCCCT-T-TTTTCCCSEEECCSC
T ss_pred CCCCccChhhccc---ccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCC-CcCCccCh-h-hcccccCCeEEeCCC
Confidence 4677777665544 7889999998864 6667654 36688999999987 56666632 3 334668899988764
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.9e-12 Score=116.38 Aligned_cols=252 Identities=14% Similarity=0.058 Sum_probs=135.8
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccc--ccccccc-------CCCCcceeEEEeecccccccc
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMK--TFSQGIL-------STPKLHKVQVIVKEEGELYHR 86 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~--~lp~~~~-------~l~~L~~L~l~~~~~~~~~~~ 86 (407)
..++|+.|+++++. + ..|... . ..|++|+++++ .+. .+|..+. .+++|++|++.++.-.
T Consensus 41 ~~~~L~~l~l~~n~-l-~~p~~~--~--~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 108 (312)
T 1wwl_A 41 GGRSLEYLLKRVDT-E-ADLGQF--T--DIIKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVT----- 108 (312)
T ss_dssp EEEECTTHHHHCCT-T-CCCHHH--H--HHHHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-----
T ss_pred cCCCceeEeecccc-c-ccHHHH--H--HHHhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-----
Confidence 35667777777753 3 444321 1 22778888877 443 3554444 6888888888762211
Q ss_pred cCcchhhHHHHHHhh--cCCCCccEEEeccCCCcceeccCC-CCCccccCCceEEEEecCCCCCcCCccchhhccccCCe
Q 047829 87 EGNLNSTIQKCYKEM--IGFRDIWYLQLSYFPRLKEIWHGQ-ALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGW 163 (407)
Q Consensus 87 ~~~~~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 163 (407)
+.+|..+ ..+++|++|+++++. +...+... .++...+++|+.|++++|.... ++ ...+..+++|++
T Consensus 109 --------~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~-~~~~~~l~~L~~ 177 (312)
T 1wwl_A 109 --------GTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FS-CEQVRVFPALST 177 (312)
T ss_dssp --------SCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CC-TTTCCCCSSCCE
T ss_pred --------chhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-ch-HHHhccCCCCCE
Confidence 0123333 567888999988876 33221100 0000112889999999887644 33 234778899999
Q ss_pred eEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCC-CccccCCCccEEeEecCCCCccccCcccc
Q 047829 164 LEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFT-GNIIELPMFWSLTIENCPDMETFISNSTS 242 (407)
Q Consensus 164 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 242 (407)
|++++|.-...++... ......+++|++|+++++. +..+.... ..+..+++|+.|+++++ .+++..+...
T Consensus 178 L~Ls~N~l~~~~~~~~------~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~- 248 (312)
T 1wwl_A 178 LDLSDNPELGERGLIS------ALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPS- 248 (312)
T ss_dssp EECCSCTTCHHHHHHH------HSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSC-
T ss_pred EECCCCCcCcchHHHH------HHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhh-
Confidence 9999875322211000 0000134677777777652 22111000 01123445555555443 2333221111
Q ss_pred cccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccc
Q 047829 243 ILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQK 322 (407)
Q Consensus 243 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~ 322 (407)
...+++|+.|+++++ .++.+|... .++|+.|+++++ .++.
T Consensus 249 --------------------------------~~~l~~L~~L~Ls~N-~l~~ip~~~------~~~L~~L~Ls~N-~l~~ 288 (312)
T 1wwl_A 249 --------------------------------CDWPSQLNSLNLSFT-GLKQVPKGL------PAKLSVLDLSYN-RLDR 288 (312)
T ss_dssp --------------------------------CCCCTTCCEEECTTS-CCSSCCSSC------CSEEEEEECCSS-CCCS
T ss_pred --------------------------------hhhcCCCCEEECCCC-ccChhhhhc------cCCceEEECCCC-CCCC
Confidence 223456666666663 444555431 157777787775 3555
Q ss_pred cccccccccccCEEEecc
Q 047829 323 LVPASWHLENLATLKVSK 340 (407)
Q Consensus 323 l~~~~~~~~~L~~L~l~~ 340 (407)
+|. +..+++|++|++++
T Consensus 289 ~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 289 NPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp CCC-TTTSCEEEEEECTT
T ss_pred Chh-HhhCCCCCEEeccC
Confidence 555 67778888888877
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.7e-11 Score=105.59 Aligned_cols=180 Identities=15% Similarity=0.073 Sum_probs=111.0
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCN 211 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 211 (407)
.++++.|+++++... .++ ...+..+++|++|++++|. +..++.. ....+++|++|++.++. +..+..
T Consensus 36 ~~~l~~L~l~~n~l~-~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~---------~~~~l~~L~~L~l~~n~-l~~~~~ 102 (270)
T 2o6q_A 36 PADTKKLDLQSNKLS-SLP-SKAFHRLTKLRLLYLNDNK-LQTLPAG---------IFKELKNLETLWVTDNK-LQALPI 102 (270)
T ss_dssp CTTCSEEECCSSCCS-CCC-TTSSSSCTTCCEEECCSSC-CSCCCTT---------TTSSCTTCCEEECCSSC-CCCCCT
T ss_pred CCCCCEEECcCCCCC-eeC-HHHhcCCCCCCEEECCCCc-cCeeChh---------hhcCCCCCCEEECCCCc-CCcCCH
Confidence 356777777776543 332 2335677777888777653 3332210 11124677777777653 333321
Q ss_pred CCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccc
Q 047829 212 FTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHK 291 (407)
Q Consensus 212 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 291 (407)
..+..+++|+.|++.++ .++.+++.. +..+++|++|+++++.. ..+.. ..+..+++|+.|+++++ .
T Consensus 103 --~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l-~~~~~--------~~~~~l~~L~~L~L~~n-~ 168 (270)
T 2o6q_A 103 --GVFDQLVNLAELRLDRN-QLKSLPPRV-FDSLTKLTYLSLGYNEL-QSLPK--------GVFDKLTSLKELRLYNN-Q 168 (270)
T ss_dssp --TTTTTCSSCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCC-CCCCT--------TTTTTCTTCCEEECCSS-C
T ss_pred --hHcccccCCCEEECCCC-ccCeeCHHH-hCcCcCCCEEECCCCcC-CccCH--------hHccCCcccceeEecCC-c
Confidence 12445677888888764 455555433 34578888888877642 22111 11456788899998874 5
Q ss_pred cccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCc
Q 047829 292 VQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCH 342 (407)
Q Consensus 292 l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 342 (407)
++.++...+.. +++|+.|+++++ .++.+|+ .+..+++|+.|++++++
T Consensus 169 l~~~~~~~~~~---l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 169 LKRVPEGAFDK---LTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSCCCTTTTTT---CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEeChhHhcc---CCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 66666655544 788999999887 4566665 35678899999998754
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.4e-11 Score=106.19 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=104.4
Q ss_pred cccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccc
Q 047829 130 SFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
..+++|+.|.+.++... .+. .+..+++|++|++++|. +..+..+ . .+++|++|+++++ .+..+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~---~l~~l~~L~~L~l~~n~-l~~~~~l----------~-~l~~L~~L~L~~n-~l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ---GIQYLPNVRYLALGGNK-LHDISAL----------K-ELTNLTYLILTGN-QLQSL 100 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT---TGGGCTTCCEEECTTSC-CCCCGGG----------T-TCTTCCEEECTTS-CCCCC
T ss_pred ccccceeeeeeCCCCcc-ccc---ccccCCCCcEEECCCCC-CCCchhh----------c-CCCCCCEEECCCC-ccCcc
Confidence 34788888888876543 322 26788888888888864 3332211 1 3578888888876 34433
Q ss_pred ccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccc
Q 047829 210 CNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
.. ..+..+++|+.|++.++ .++.+++.. ...+++|++|++++|. +..+.+. ....+++|+.|+++++
T Consensus 101 ~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~--------~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 101 PN--GVFDKLTNLKELVLVEN-QLQSLPDGV-FDKLTNLTYLNLAHNQ-LQSLPKG--------VFDKLTNLTELDLSYN 167 (272)
T ss_dssp CT--TTTTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTT--------TTTTCTTCCEEECCSS
T ss_pred Ch--hHhcCCcCCCEEECCCC-cCCccCHHH-hccCCCCCEEECCCCc-cCccCHH--------HhccCccCCEEECCCC
Confidence 22 12446778888888775 455554432 3346777777777663 2222111 1345667777777774
Q ss_pred cccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccC
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKC 341 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 341 (407)
.++.++...+.. +++|+.|+++++. +..+++ .+..+++|++|+++++
T Consensus 168 -~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 168 -QLQSLPEGVFDK---LTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp -CCCCCCTTTTTT---CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred -CcCccCHHHhcC---CccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 455555543333 6677777777654 333433 3456677777777664
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-10 Score=104.08 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=93.3
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCN 211 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 211 (407)
+++|+.|++++|... .+++ ..+..+++|+.|++++|. +..+... .+. .+++|++|++.++. +..+..
T Consensus 51 l~~L~~L~l~~n~l~-~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~--------~~~-~l~~L~~L~l~~n~-l~~~~~ 117 (276)
T 2z62_A 51 FPELQVLDLSRCEIQ-TIED-GAYQSLSHLSTLILTGNP-IQSLALG--------AFS-GLSSLQKLVAVETN-LASLEN 117 (276)
T ss_dssp CTTCSEEECTTCCCC-EECT-TTTTTCTTCCEEECTTCC-CCEECTT--------TTT-TCTTCCEEECTTSC-CCCSTT
T ss_pred ccCCcEEECCCCcCC-ccCH-HHccCCcCCCEEECCCCc-cCccChh--------hhc-CCccccEEECCCCC-ccccCc
Confidence 455555555555332 2221 224555566666665543 2222110 001 23566666665442 222111
Q ss_pred CCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcc----eEecc
Q 047829 212 FTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLR----FLELS 287 (407)
Q Consensus 212 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~----~L~L~ 287 (407)
..+..+++|+.|+++++ .++.+........+++|++|+++++.... +.. .....+++|+ .|+++
T Consensus 118 --~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~--------~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 118 --FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYC--------TDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp --CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECG--------GGGHHHHTCTTCCEEEECC
T ss_pred --hhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCc-CCH--------HHhhhhhhccccceeeecC
Confidence 11345566777776654 34433211223446777777777664321 110 0123334444 77887
Q ss_pred cccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccC
Q 047829 288 RLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKC 341 (407)
Q Consensus 288 ~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c 341 (407)
+ +.+..++...+. ..+|+.|+++++. ++.+|.. +..+++|++|+++++
T Consensus 186 ~-n~l~~~~~~~~~----~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 186 L-NPMNFIQPGAFK----EIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp S-SCCCEECTTSSC----SCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred C-CcccccCccccC----CCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 7 456666665443 4579999998875 6666654 467899999999874
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-11 Score=109.41 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=43.8
Q ss_pred cCCCccEEeEecCCCCccccCccccc--ccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 218 ELPMFWSLTIENCPDMETFISNSTSI--LHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 218 ~~~~L~~L~l~~c~~l~~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
.+++|++|+++++ .++...|..+.. .+++|++|+++++..- .++. ..+++|+.|++++ +.++.+
T Consensus 222 ~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-----------~~~~~L~~L~Ls~-N~l~~~ 287 (310)
T 4glp_A 222 AGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-----------GLPAKLRVLDLSS-NRLNRA 287 (310)
T ss_dssp HTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-----------CCCSCCSCEECCS-CCCCSC
T ss_pred cCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC-chhh-----------hhcCCCCEEECCC-CcCCCC
Confidence 4466666666553 344442222111 1357777777665432 2211 1136788888877 345554
Q ss_pred cccccccccccCCcCceeeccCc
Q 047829 296 WKENAESNKVFANLKSPEISECS 318 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~ 318 (407)
+. +. .+++|+.|++++++
T Consensus 288 ~~--~~---~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 288 PQ--PD---ELPEVDNLTLDGNP 305 (310)
T ss_dssp CC--TT---SCCCCSCEECSSTT
T ss_pred ch--hh---hCCCccEEECcCCC
Confidence 33 12 26788888888764
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.8e-12 Score=120.00 Aligned_cols=137 Identities=17% Similarity=0.138 Sum_probs=81.9
Q ss_pred CCccEEeEecCCCCccccCc---ccccccCCCceeecccccccchhhhccccccccc-cccccCCcceEeccccccc---
Q 047829 220 PMFWSLTIENCPDMETFISN---STSILHMTADNKEPQKLKSEENLLVADQIQHLFD-EKVTFPQLRFLELSRLHKV--- 292 (407)
Q Consensus 220 ~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l--- 292 (407)
++|++|++++|. ++..... .....+++|++|.+++|..-..-+ ....+ .+..+++|+.|+++++. +
T Consensus 159 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~-----~~l~~~~l~~~~~L~~L~Ls~n~-l~~~ 231 (386)
T 2ca6_A 159 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI-----EHLLLEGLAYCQELKVLDLQDNT-FTHL 231 (386)
T ss_dssp CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH-----HHHHHTTGGGCTTCCEEECCSSC-CHHH
T ss_pred CCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH-----HHHHHHHhhcCCCccEEECcCCC-CCcH
Confidence 789999998864 4322111 123457889999988875321100 00011 25567888888888853 4
Q ss_pred --ccccccccccccccCCcCceeeccCccccc----ccccc--ccccccCEEEeccCcCccc----ccCchhhhccccCC
Q 047829 293 --QHLWKENAESNKVFANLKSPEISECSKLQK----LVPAS--WHLENLATLKVSKCHGLIN----LLTLSTSESLVNLE 360 (407)
Q Consensus 293 --~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~----l~~~~--~~~~~L~~L~l~~c~~l~~----~~~~~~~~~l~~L~ 360 (407)
..++.. +..+++|+.|++++|..-.. ++..+ +.+++|++|++++| .+.. ..+..+..++++|+
T Consensus 232 g~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 232 GSSALAIA----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHHHHH----GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHH----HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCce
Confidence 233332 23378888888888763222 34444 23788888888875 4544 12333335578888
Q ss_pred EEEEeccc
Q 047829 361 RMKITDCK 368 (407)
Q Consensus 361 ~L~i~~c~ 368 (407)
+|++++|+
T Consensus 307 ~L~l~~N~ 314 (386)
T 2ca6_A 307 FLELNGNR 314 (386)
T ss_dssp EEECTTSB
T ss_pred EEEccCCc
Confidence 88888874
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.9e-13 Score=125.86 Aligned_cols=271 Identities=12% Similarity=0.052 Sum_probs=137.0
Q ss_pred cccCCccEEeecCCCcccc-----ccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccC
Q 047829 41 LEFPSLERVSVTFCPDMKT-----FSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYF 115 (407)
Q Consensus 41 ~~~~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 115 (407)
..+++|++|++++| .+.. ++..+..+++|++|++.++... ...+..+..+..+...+..+++|++|+++++
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~---~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTG---RVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTT---SCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccC---ccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 46788999999998 4442 4444667889999988642111 0112234556667677777888888888877
Q ss_pred CCcce-----eccCCCCCccccCCceEEEEecCCCCCcCC--ccchhhcc---------ccCCeeEEccccccceeeccC
Q 047829 116 PRLKE-----IWHGQALPVSFFNNLCKLVVDDCTNMSSAI--PVNLLRCL---------NNLGWLEVRNCDSLEEVFHLE 179 (407)
Q Consensus 116 ~~l~~-----~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~l---------~~L~~L~l~~~~~~~~~~~~~ 179 (407)
. +.. .+... ..+++|+.|++++|......+ ....+..+ ++|++|++++|. +...
T Consensus 105 ~-l~~~~~~~l~~~l----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~---- 174 (386)
T 2ca6_A 105 A-FGPTAQEPLIDFL----SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENG---- 174 (386)
T ss_dssp C-CCTTTHHHHHHHH----HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGG----
T ss_pred c-CCHHHHHHHHHHH----HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcH----
Confidence 6 221 11011 235677777777665421100 00112222 566666666543 1100
Q ss_pred CccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCcc-----ccCcccccccCCCceeecc
Q 047829 180 ELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMET-----FISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~l~~L~~L~l~ 254 (407)
.+......+..+++|+.|++++| .++. +.+. ....+++|++|+++
T Consensus 175 ----------------------------~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~-~l~~~~~L~~L~Ls 224 (386)
T 2ca6_A 175 ----------------------------SMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLE-GLAYCQELKVLDLQ 224 (386)
T ss_dssp ----------------------------GHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHT-TGGGCTTCCEEECC
T ss_pred ----------------------------HHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHH-HhhcCCCccEEECc
Confidence 00000001223445555555544 2221 1110 12235666666666
Q ss_pred ccccc----chhhhccccccccccccccCCcceEecccccccccccccccc-cc--cccCCcCceeeccCcccc----cc
Q 047829 255 KLKSE----ENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAE-SN--KVFANLKSPEISECSKLQ----KL 323 (407)
Q Consensus 255 ~~~~l----~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~-~~--~~~~~L~~L~l~~c~~l~----~l 323 (407)
+|..- ..+.. .+..+++|+.|+++++. ++......++ .+ ..+++|+.|++++|.--. .+
T Consensus 225 ~n~l~~~g~~~l~~---------~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 225 DNTFTHLGSSALAI---------ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp SSCCHHHHHHHHHH---------HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCCCcHHHHHHHH---------HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 55421 11111 14456677777777743 3332111111 01 126778888888775433 26
Q ss_pred cccc-ccccccCEEEeccCcCcccccC--chhhhccccCCEEEEec
Q 047829 324 VPAS-WHLENLATLKVSKCHGLINLLT--LSTSESLVNLERMKITD 366 (407)
Q Consensus 324 ~~~~-~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~i~~ 366 (407)
|..+ ..+++|++|++++|+ +....+ ..+...++.++...+..
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchhhh
Confidence 6555 457888999988853 443321 33344456666555544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.22 E-value=7.1e-11 Score=106.32 Aligned_cols=199 Identities=18% Similarity=0.166 Sum_probs=135.7
Q ss_pred cccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccc
Q 047829 130 SFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
..+.++..+.+.++... +. .....+++|+.|.+.++. +..+..+. .+++|+.|+++++. +..+
T Consensus 16 ~~~~~l~~l~l~~~~~~-~~---~~~~~l~~L~~L~l~~~~-i~~~~~l~-----------~l~~L~~L~l~~n~-l~~~ 78 (272)
T 3rfs_A 16 DAFAETIKANLKKKSVT-DA---VTQNELNSIDQIIANNSD-IKSVQGIQ-----------YLPNVRYLALGGNK-LHDI 78 (272)
T ss_dssp HHHHHHHHHHHTCSCTT-SE---ECHHHHTTCCEEECTTSC-CCCCTTGG-----------GCTTCCEEECTTSC-CCCC
T ss_pred chHHHHHHHHhcCcccc-cc---cccccccceeeeeeCCCC-cccccccc-----------cCCCCcEEECCCCC-CCCc
Confidence 44555666656554332 22 225788999999999874 44332211 36899999999864 4433
Q ss_pred ccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccc
Q 047829 210 CNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
. .+..+++|++|++.++ .++.+++.. ...+++|++|+++++..- .+.+ ..+..+++|+.|+++++
T Consensus 79 ~----~l~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~-~~~~--------~~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 79 S----ALKELTNLTYLILTGN-QLQSLPNGV-FDKLTNLKELVLVENQLQ-SLPD--------GVFDKLTNLTYLNLAHN 143 (272)
T ss_dssp G----GGTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTTSCCC-CCCT--------TTTTTCTTCCEEECCSS
T ss_pred h----hhcCCCCCCEEECCCC-ccCccChhH-hcCCcCCCEEECCCCcCC-ccCH--------HHhccCCCCCEEECCCC
Confidence 2 3557899999999886 566665543 345899999999887532 2211 11456889999999985
Q ss_pred cccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
.++.++...+.. +++|+.|++++|. +..+++. +..+++|++|+++++ .+..+++ .....+++|+.|++.++
T Consensus 144 -~l~~~~~~~~~~---l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 144 -QLQSLPKGVFDK---LTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp -CCCCCCTTTTTT---CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred -ccCccCHHHhcc---CccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC-cCCccCH-HHHhCCcCCCEEEccCC
Confidence 667777655443 8899999999875 5555543 477899999999884 5666643 44567889999999876
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=105.65 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=24.4
Q ss_pred CCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 307 ANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 307 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
++|+.|+++++. ++.+|..+ +++|++|++++ +.+..++. ...+++|+.|+++++
T Consensus 251 ~~L~~L~Ls~N~-l~~lp~~~--~~~L~~L~Ls~-N~l~~~~~---~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 251 SALNSLNLSFAG-LEQVPKGL--PAKLRVLDLSS-NRLNRAPQ---PDELPEVDNLTLDGN 304 (310)
T ss_dssp TTCCCEECCSSC-CCSCCSCC--CSCCSCEECCS-CCCCSCCC---TTSCCCCSCEECSST
T ss_pred CcCCEEECCCCC-CCchhhhh--cCCCCEEECCC-CcCCCCch---hhhCCCccEEECcCC
Confidence 455555555442 33444433 24555555554 23333311 233455555555444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.8e-10 Score=100.25 Aligned_cols=176 Identities=16% Similarity=0.115 Sum_probs=121.8
Q ss_pred ccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccC
Q 047829 159 NNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFIS 238 (407)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 238 (407)
...+.++++++ .+..++. ...++++.|++.++. +..+.. ..+..+++|+.|+++++ .++.+++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~------------~~~~~l~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~ 76 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPS------------GIPADTEKLDLQSTG-LATLSD--ATFRGLTKLTWLNLDYN-QLQTLSA 76 (251)
T ss_dssp GGGTEEECTTC-CCSSCCS------------CCCTTCCEEECTTSC-CCCCCT--TTTTTCTTCCEEECTTS-CCCCCCT
T ss_pred CCCeEEecCCC-CccccCC------------CCCCCCCEEEccCCC-cCccCH--hHhcCcccCCEEECCCC-cCCccCH
Confidence 45677888764 3444332 123689999998764 433322 23567899999999884 5777655
Q ss_pred cccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCc
Q 047829 239 NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECS 318 (407)
Q Consensus 239 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 318 (407)
.. +..+++|++|+++++... .+.+ ..+..+++|+.|++++ +.++.++...+.. +++|+.|+++++
T Consensus 77 ~~-~~~l~~L~~L~L~~n~l~-~~~~--------~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~---l~~L~~L~Ls~N- 141 (251)
T 3m19_A 77 GV-FDDLTELGTLGLANNQLA-SLPL--------GVFDHLTQLDKLYLGG-NQLKSLPSGVFDR---LTKLKELRLNTN- 141 (251)
T ss_dssp TT-TTTCTTCCEEECTTSCCC-CCCT--------TTTTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSS-
T ss_pred hH-hccCCcCCEEECCCCccc-ccCh--------hHhcccCCCCEEEcCC-CcCCCcChhHhcc---CCcccEEECcCC-
Confidence 43 345899999999887533 2211 1245688999999998 4677777665544 889999999987
Q ss_pred ccccccc-ccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 319 KLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 319 ~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
.++.+++ .+..+++|++|++++ +.+..+++ .....+++|+.|++.+++
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLST-NQLQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred cCCccCHHHcCcCcCCCEEECCC-CcCCccCH-HHHhCCCCCCEEEeeCCc
Confidence 4666665 567889999999988 46666643 345678899999998763
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=99.20 Aligned_cols=111 Identities=11% Similarity=0.152 Sum_probs=66.5
Q ss_pred cccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcce
Q 047829 41 LEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKE 120 (407)
Q Consensus 41 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 120 (407)
..+++|++|+++++ .+..+| ++..+++|++|++.++.. . .+ ..+..+++|++|+++++. +..
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~-------~-------~~-~~l~~l~~L~~L~l~~n~-l~~ 102 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHA-------T-------NY-NPISGLSNLERLRIMGKD-VTS 102 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCC-------S-------CC-GGGTTCTTCCEEEEECTT-CBG
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCC-------C-------cc-hhhhcCCCCCEEEeECCc-cCc
Confidence 46789999999988 677777 678888999998865210 0 01 134456677777777655 332
Q ss_pred eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccce
Q 047829 121 IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEE 174 (407)
Q Consensus 121 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 174 (407)
..... + ..+++|+.|++++|...... ...+..+++|++|++++|..+..
T Consensus 103 ~~~~~-l--~~l~~L~~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~~i~~ 151 (197)
T 4ezg_A 103 DKIPN-L--SGLTSLTLLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAITD 151 (197)
T ss_dssp GGSCC-C--TTCTTCCEEECCSSBCBGGG--HHHHTTCSSCCEEECCSCTBCCC
T ss_pred ccChh-h--cCCCCCCEEEecCCccCcHh--HHHHhhCCCCCEEEccCCCCccc
Confidence 11111 2 23666777777766544321 23356666677777766643333
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-11 Score=110.80 Aligned_cols=68 Identities=13% Similarity=-0.071 Sum_probs=36.4
Q ss_pred HHHhhcCCCCccEEEeccCCCcceecc----CCCCCccccC-CceEEEEecCCCCCcCCccchhhcc-----ccCCeeEE
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWH----GQALPVSFFN-NLCKLVVDDCTNMSSAIPVNLLRCL-----NNLGWLEV 166 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~l 166 (407)
+|+.....++|++|+++++. +..... .. + ..++ +|+.|++++|.... ..+ ..+..+ ++|++|++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-l--~~~~~~L~~L~Ls~N~l~~-~~~-~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQA-F--ANTPASVTSLNLSGNSLGF-KNS-DELVQILAAIPANVTSLNL 87 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHH-H--HTCCTTCCEEECCSSCGGG-SCH-HHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHH-H--HhCCCceeEEECcCCCCCH-HHH-HHHHHHHhccCCCccEEEC
Confidence 33344445558888888776 433221 00 1 1245 77777777764432 221 223333 77777777
Q ss_pred cccc
Q 047829 167 RNCD 170 (407)
Q Consensus 167 ~~~~ 170 (407)
++|.
T Consensus 88 s~n~ 91 (362)
T 3goz_A 88 SGNF 91 (362)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 7764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.08 E-value=5.4e-10 Score=101.54 Aligned_cols=169 Identities=17% Similarity=0.185 Sum_probs=83.8
Q ss_pred ccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 42 EFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
.+++|++|++++| .+..++ ++..+++|++|++.++. +..++. +..+++|++|+++++. ++..
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~--------------l~~~~~-l~~l~~L~~L~l~~n~-l~~~ 105 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK--------------LTDIKP-LANLKNLGWLFLDENK-VKDL 105 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC--------------CCCCGG-GTTCTTCCEEECCSSC-CCCG
T ss_pred hcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCc--------------cCCCcc-cccCCCCCEEECCCCc-CCCC
Confidence 4455555555555 444443 34555555555553310 111111 3445556666665554 2221
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLI 201 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (407)
+. + ..+++|+.|++.+|... .+ ..+..+++|+.|++++|. +..+..+ . .+++|+.|+++
T Consensus 106 ~~---l--~~l~~L~~L~L~~n~i~-~~---~~l~~l~~L~~L~l~~n~-l~~~~~l----------~-~l~~L~~L~L~ 164 (291)
T 1h6t_A 106 SS---L--KDLKKLKSLSLEHNGIS-DI---NGLVHLPQLESLYLGNNK-ITDITVL----------S-RLTKLDTLSLE 164 (291)
T ss_dssp GG---G--TTCTTCCEEECTTSCCC-CC---GGGGGCTTCCEEECCSSC-CCCCGGG----------G-GCTTCSEEECC
T ss_pred hh---h--ccCCCCCEEECCCCcCC-CC---hhhcCCCCCCEEEccCCc-CCcchhh----------c-cCCCCCEEEcc
Confidence 11 1 23566666666665432 22 225566666666666653 2222110 0 24666666666
Q ss_pred ccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccc
Q 047829 202 DLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKS 258 (407)
Q Consensus 202 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 258 (407)
++ .+..+.. +..+++|+.|+++++ .++.++. ...+++|+.|++++++.
T Consensus 165 ~N-~l~~~~~----l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 165 DN-QISDIVP----LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp SS-CCCCCGG----GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEEE
T ss_pred CC-ccccchh----hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCcc
Confidence 55 2333221 345667777777664 4444432 33477777777776653
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.8e-10 Score=96.30 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=82.3
Q ss_pred CCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccc
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHL 271 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 271 (407)
+++|+.|+++++ .+..++ .+..+++|+.|++.+| .++..+ ....+++|++|+++++..-...+
T Consensus 43 l~~L~~L~l~~n-~i~~l~----~l~~l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~-------- 105 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT----GIEYAHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKDVTSDKI-------- 105 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT----TGGGCTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTTCBGGGS--------
T ss_pred cCCccEEeccCC-CccChH----HHhcCCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCccCcccC--------
Confidence 467788877765 333332 2446777888888776 444332 13346777777776654322111
Q ss_pred cccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCch
Q 047829 272 FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLS 351 (407)
Q Consensus 272 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 351 (407)
..+..+++|+.|+++++ .++......+. .+++|+.|++++|..+..++ .+..+++|++|++++| .+.++.
T Consensus 106 -~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~---~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~--- 175 (197)
T 4ezg_A 106 -PNLSGLTSLTLLDISHS-AHDDSILTKIN---TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR--- 175 (197)
T ss_dssp -CCCTTCTTCCEEECCSS-BCBGGGHHHHT---TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT---
T ss_pred -hhhcCCCCCCEEEecCC-ccCcHhHHHHh---hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH---
Confidence 12445667777777763 33322122222 26667777776665455554 3566666777777663 344432
Q ss_pred hhhccccCCEEEEecc
Q 047829 352 TSESLVNLERMKITDC 367 (407)
Q Consensus 352 ~~~~l~~L~~L~i~~c 367 (407)
....+++|+.|++.++
T Consensus 176 ~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TGGGCSSCCEEEECBC
T ss_pred HhccCCCCCEEEeeCc
Confidence 2345566666666655
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-09 Score=94.32 Aligned_cols=176 Identities=15% Similarity=0.122 Sum_probs=122.1
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF 212 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 212 (407)
.+.+.+++.++. ++.+|.. +. ++++.|+++++. +..+... .+. .+++|++|+++++ .+..+..
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~--~~--~~l~~L~L~~n~-l~~~~~~--------~~~-~l~~L~~L~L~~n-~l~~~~~- 76 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSG--IP--ADTEKLDLQSTG-LATLSDA--------TFR-GLTKLTWLNLDYN-QLQTLSA- 76 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSC--CC--TTCCEEECTTSC-CCCCCTT--------TTT-TCTTCCEEECTTS-CCCCCCT-
T ss_pred CCCeEEecCCCC-ccccCCC--CC--CCCCEEEccCCC-cCccCHh--------Hhc-CcccCCEEECCCC-cCCccCH-
Confidence 567788887754 4455542 22 689999999874 3333211 111 3589999999986 3444322
Q ss_pred CCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccc
Q 047829 213 TGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKV 292 (407)
Q Consensus 213 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 292 (407)
..+..+++|+.|+++++ .++.+++.. +..+++|++|+++++.. ..+.+. .+..+++|+.|+++++ .+
T Consensus 77 -~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l-~~~~~~--------~~~~l~~L~~L~Ls~N-~l 143 (251)
T 3m19_A 77 -GVFDDLTELGTLGLANN-QLASLPLGV-FDHLTQLDKLYLGGNQL-KSLPSG--------VFDRLTKLKELRLNTN-QL 143 (251)
T ss_dssp -TTTTTCTTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECCSSCC-CCCCTT--------TTTTCTTCCEEECCSS-CC
T ss_pred -hHhccCCcCCEEECCCC-cccccChhH-hcccCCCCEEEcCCCcC-CCcChh--------HhccCCcccEEECcCC-cC
Confidence 23567899999999885 577766543 44689999999988743 322211 1456899999999994 77
Q ss_pred ccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCc
Q 047829 293 QHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCH 342 (407)
Q Consensus 293 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 342 (407)
+.++...+.. +++|+.|+++++. ++.+++ .+..+++|++|++++++
T Consensus 144 ~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 144 QSIPAGAFDK---LTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCCCTTTTTT---CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHHHcCc---CcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 7877765554 8999999999875 555554 56789999999999854
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-09 Score=97.01 Aligned_cols=168 Identities=16% Similarity=0.182 Sum_probs=107.3
Q ss_pred cccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccc
Q 047829 130 SFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRF 209 (407)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 209 (407)
..+++|+.|.+.+|... .++ .+..+++|+.|++++|. +..+..+ . .+++|+.|+++++. +..+
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~---~~~~l~~L~~L~L~~n~-l~~~~~l----------~-~l~~L~~L~l~~n~-l~~~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ---GIQYLPNVTKLFLNGNK-LTDIKPL----------A-NLKNLGWLFLDENK-VKDL 105 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT---TGGGCTTCCEEECCSSC-CCCCGGG----------T-TCTTCCEEECCSSC-CCCG
T ss_pred hhcCcccEEEccCCCcc-cCh---hHhcCCCCCEEEccCCc-cCCCccc----------c-cCCCCCEEECCCCc-CCCC
Confidence 34788899999887543 332 26788899999998864 3333221 1 35788888888763 4443
Q ss_pred ccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccc
Q 047829 210 CNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRL 289 (407)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 289 (407)
. .+..+++|+.|+++++ .++.++ ....+++|+.|+++++..- .+ .....+++|+.|+++++
T Consensus 106 ~----~l~~l~~L~~L~L~~n-~i~~~~---~l~~l~~L~~L~l~~n~l~-~~----------~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 106 S----SLKDLKKLKSLSLEHN-GISDIN---GLVHLPQLESLYLGNNKIT-DI----------TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp G----GGTTCTTCCEEECTTS-CCCCCG---GGGGCTTCCEEECCSSCCC-CC----------GGGGGCTTCSEEECCSS
T ss_pred h----hhccCCCCCEEECCCC-cCCCCh---hhcCCCCCCEEEccCCcCC-cc----------hhhccCCCCCEEEccCC
Confidence 2 2456788888888775 455442 1335788888888776422 11 22556778888888774
Q ss_pred cccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 290 HKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 290 ~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
.++.++. +. .+++|+.|+++++ .++.++. +..+++|+.|+++++
T Consensus 167 -~l~~~~~--l~---~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 167 -QISDIVP--LA---GLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp -CCCCCGG--GT---TCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEE
T ss_pred -ccccchh--hc---CCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCC
Confidence 4555443 22 3777888888776 3555543 667778888888774
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=109.25 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=26.2
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
|++|+.|+++++ .+..++. ...+++|+.|++++| .+..++. +..+++|++|++.
T Consensus 42 L~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HTTCCCCBCTTC-CCCCCTT---GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECC
T ss_pred CCCCCEEECcCC-CCCCChH---HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECc
Confidence 455555555553 2333321 234555555555555 4444443 4555555555553
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-10 Score=106.98 Aligned_cols=62 Identities=11% Similarity=0.004 Sum_probs=33.9
Q ss_pred CCcceEecccccccccccccccc-cccccCCcCceeeccCc-------cccccccccccccccCEEEeccC
Q 047829 279 PQLRFLELSRLHKVQHLWKENAE-SNKVFANLKSPEISECS-------KLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 279 ~~L~~L~L~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~c~-------~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
++|+.|+++++ .++..+...+. ....+++|+.|++++|. .+..++..+..+++|+.|+++++
T Consensus 225 ~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 225 NHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp TTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred CCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 46777777763 34443321111 01235677777777765 12233344556677777888763
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-09 Score=106.98 Aligned_cols=194 Identities=18% Similarity=0.207 Sum_probs=135.0
Q ss_pred CCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccc
Q 047829 127 LPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKL 206 (407)
Q Consensus 127 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 206 (407)
||...+.++..+.+.... +.++.. ...+++|+.|++++|. +..++.+. .+++|+.|+++++. +
T Consensus 15 fpd~~l~~l~~l~l~~~~-i~~~~~---~~~L~~L~~L~l~~n~-i~~l~~l~-----------~l~~L~~L~Ls~N~-l 77 (605)
T 1m9s_A 15 FPDDAFAETIKDNLKKKS-VTDAVT---QNELNSIDQIIANNSD-IKSVQGIQ-----------YLPNVTKLFLNGNK-L 77 (605)
T ss_dssp CCSHHHHHHHHHHTTCSC-TTSEEC---HHHHTTCCCCBCTTCC-CCCCTTGG-----------GCTTCCEEECTTSC-C
T ss_pred CCcHHHHHHHHHhccCCC-cccccc---hhcCCCCCEEECcCCC-CCCChHHc-----------cCCCCCEEEeeCCC-C
Confidence 444445555555554432 233222 5788999999999874 44433211 36899999999874 4
Q ss_pred cccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEec
Q 047829 207 KRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLEL 286 (407)
Q Consensus 207 ~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 286 (407)
..+.. +..+++|+.|++.+| .+..++. ...+++|+.|++++|..- . .+.+..+++|+.|+|
T Consensus 78 ~~~~~----l~~l~~L~~L~Ls~N-~l~~l~~---l~~l~~L~~L~Ls~N~l~-~----------l~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 78 TDIKP----LTNLKNLGWLFLDEN-KIKDLSS---LKDLKKLKSLSLEHNGIS-D----------INGLVHLPQLESLYL 138 (605)
T ss_dssp CCCGG----GGGCTTCCEEECCSS-CCCCCTT---STTCTTCCEEECTTSCCC-C----------CGGGGGCTTCSEEEC
T ss_pred CCChh----hccCCCCCEEECcCC-CCCCChh---hccCCCCCEEEecCCCCC-C----------CccccCCCccCEEEC
Confidence 44322 567899999999986 4655432 345899999999887632 2 123667899999999
Q ss_pred ccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEec
Q 047829 287 SRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITD 366 (407)
Q Consensus 287 ~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 366 (407)
+++ .+..++ . +..+++|+.|++++|. +..+++ +..+++|+.|++++| .+..++ ....+++|+.|++.+
T Consensus 139 s~N-~l~~l~--~---l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 139 GNN-KITDIT--V---LSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKNLDVLELFS 206 (605)
T ss_dssp CSS-CCCCCG--G---GGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTTCSEEECCS
T ss_pred CCC-ccCCch--h---hcccCCCCEEECcCCc-CCCchh-hccCCCCCEEECcCC-CCCCCh---HHccCCCCCEEEccC
Confidence 985 455552 2 3348999999999875 555554 788999999999985 666652 356789999999998
Q ss_pred cc
Q 047829 367 CK 368 (407)
Q Consensus 367 c~ 368 (407)
|+
T Consensus 207 N~ 208 (605)
T 1m9s_A 207 QE 208 (605)
T ss_dssp EE
T ss_pred Cc
Confidence 84
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-09 Score=97.56 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=96.8
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+.+++.+.+.+. .+++++. ...+++|++|++++| .+..++ .+..+++|++|++.++ .+..
T Consensus 18 l~~l~~l~l~~~-~i~~~~~---~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N--------------~i~~ 77 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLVS---QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN--------------QISD 77 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEEC---HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS--------------CCCC
T ss_pred HHHHHHHHhcCC-Ccccccc---hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC--------------ccCC
Confidence 556666677763 4555541 347899999999998 777887 6788899999998641 1111
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
++. +..+++|++|+++++. ++..+. +. .++|+.|++++|... .+ + .+..+++|+.|++++|. ++.+.
T Consensus 78 ~~~-l~~l~~L~~L~L~~N~-l~~l~~---~~---~~~L~~L~L~~N~l~-~~-~--~l~~l~~L~~L~Ls~N~-i~~~~ 144 (263)
T 1xeu_A 78 LSP-LKDLTKLEELSVNRNR-LKNLNG---IP---SACLSRLFLDNNELR-DT-D--SLIHLKNLEILSIRNNK-LKSIV 144 (263)
T ss_dssp CGG-GTTCSSCCEEECCSSC-CSCCTT---CC---CSSCCEEECCSSCCS-BS-G--GGTTCTTCCEEECTTSC-CCBCG
T ss_pred Chh-hccCCCCCEEECCCCc-cCCcCc---cc---cCcccEEEccCCccC-CC-h--hhcCcccccEEECCCCc-CCCCh
Confidence 222 5667788888888775 333221 11 167888888776543 22 2 26677777888777753 33322
Q ss_pred ccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEec
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIEN 229 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~ 229 (407)
.+. .+++|+.|+++++. +..+ ..+..+++|+.|++.+
T Consensus 145 ~l~-----------~l~~L~~L~L~~N~-i~~~----~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 145 MLG-----------FLSKLEVLDLHGNE-ITNT----GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp GGG-----------GCTTCCEEECTTSC-CCBC----TTSTTCCCCCEEEEEE
T ss_pred HHc-----------cCCCCCEEECCCCc-Ccch----HHhccCCCCCEEeCCC
Confidence 110 24666666666542 2222 1133445555555544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.5e-09 Score=89.34 Aligned_cols=131 Identities=17% Similarity=0.105 Sum_probs=92.8
Q ss_pred CCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccc
Q 047829 219 LPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKE 298 (407)
Q Consensus 219 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~ 298 (407)
+++|+.|++.++ .++.+++.. +..+++|++|+++++.. +.+.+. .+..+++|+.|+++++ .++.++..
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~--------~~~~l~~L~~L~Ls~n-~l~~~~~~ 94 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGV-FDELTSLTQLYLGGNKL-QSLPNG--------VFNKLTSLTYLNLSTN-QLQSLPNG 94 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSCC-CCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCCcEEEcCCC-ccCcCChhh-hcccccCcEEECCCCcc-CccChh--------hcCCCCCcCEEECCCC-cCCccCHh
Confidence 568999999885 566665433 44589999999988643 222111 1456889999999984 56677665
Q ss_pred ccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 299 NAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 299 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
.+.. +++|+.|+++++. ++.+++. +..+++|++|+++++ .+..+++ .....+++|+.|++.++
T Consensus 95 ~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 95 VFDK---LTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTT---CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSC
T ss_pred HhcC---ccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCC
Confidence 5443 8899999998864 5556543 577899999999884 5666533 44567889999998875
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.8e-08 Score=86.23 Aligned_cols=130 Identities=13% Similarity=0.102 Sum_probs=65.9
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
+.++.|++++. .+..+.. ...+..+++|+.|++.++ .++.+++.. +..+++|++|+++++.... +.+
T Consensus 32 ~~~~~L~L~~N-~l~~~~~-~~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~l~~-~~~-------- 98 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEA-TGIFKKLPQLRKINFSNN-KITDIEEGA-FEGASGVNEILLTSNRLEN-VQH-------- 98 (220)
T ss_dssp TTCSEEECCSS-CCCEECC-CCCGGGCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCC-CCG--------
T ss_pred CCCCEEEcCCC-cCCccCc-hhhhccCCCCCEEECCCC-cCCEECHHH-hCCCCCCCEEECCCCccCc-cCH--------
Confidence 45677777765 2333311 112445677777777663 455554433 2336666666666554321 111
Q ss_pred ccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccc-ccccccccccCEEEecc
Q 047829 273 DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKL-VPASWHLENLATLKVSK 340 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~ 340 (407)
..+..+++|+.|++++ +.+..++...+.. +++|+.|+++++. ++.+ |..+..+++|++|++++
T Consensus 99 ~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 99 KMFKGLESLKTLMLRS-NRITCVGNDSFIG---LSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp GGGTTCSSCCEEECTT-SCCCCBCTTSSTT---CTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCS
T ss_pred hHhcCCcCCCEEECCC-CcCCeECHhHcCC---CccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecC
Confidence 1133455666666665 3344444333332 5566666666543 3333 44455556666666655
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=95.75 Aligned_cols=154 Identities=15% Similarity=0.076 Sum_probs=101.6
Q ss_pred CcccEEeccccccccccccCCCccc-cCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNII-ELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHL 271 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 271 (407)
+.++.|++++. .+..+... .+. .+++|+.|++.++ +++.+++.. +..+++|++|+++++.. ..+.+
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~--~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~l-~~~~~------- 105 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAE--WTPTRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSNHL-HTLDE------- 105 (361)
T ss_dssp TTCSEEECCSS-CCCEECTT--SSSSCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCC-CEECT-------
T ss_pred CCCCEEECCCC-CCCccChh--hhhhcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCCcC-CcCCH-------
Confidence 56888999876 45554322 233 6788999999874 677776544 34588899999988753 32211
Q ss_pred cccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccccc----ccccccCEEEeccCcCcccc
Q 047829 272 FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPAS----WHLENLATLKVSKCHGLINL 347 (407)
Q Consensus 272 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~L~l~~c~~l~~~ 347 (407)
..+..+++|+.|++++ +.+..++...+.. +++|+.|+++++ .+..+|... ..+++|+.|++++ +.+..+
T Consensus 106 -~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~---l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l 178 (361)
T 2xot_A 106 -FLFSDLQALEVLLLYN-NHIVVVDRNAFED---MAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS-NKLKKL 178 (361)
T ss_dssp -TTTTTCTTCCEEECCS-SCCCEECTTTTTT---CTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS-SCCCCC
T ss_pred -HHhCCCcCCCEEECCC-CcccEECHHHhCC---cccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC-CCCCcc
Confidence 1245678899999988 4566666555544 788899998876 456666544 4688899999987 567666
Q ss_pred cCchhhhcccc--CCEEEEecc
Q 047829 348 LTLSTSESLVN--LERMKITDC 367 (407)
Q Consensus 348 ~~~~~~~~l~~--L~~L~i~~c 367 (407)
+. .....++. ++.|++.++
T Consensus 179 ~~-~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 179 PL-TDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CH-HHHHHSCHHHHTTEECCSS
T ss_pred CH-HHhhhccHhhcceEEecCC
Confidence 33 33445554 467777664
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.4e-08 Score=98.74 Aligned_cols=181 Identities=16% Similarity=0.126 Sum_probs=126.9
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF 212 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 212 (407)
.+++.|++.++.. +.++.. + +++|+.|++++|. ++.++ ..+++|+.|+++++ .+..++.
T Consensus 59 ~~L~~L~Ls~n~L-~~lp~~--l--~~~L~~L~Ls~N~-l~~ip-------------~~l~~L~~L~Ls~N-~l~~ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSLPDN--L--PPQITVLEITQNA-LISLP-------------ELPASLEYLDACDN-RLSTLPE- 117 (571)
T ss_dssp TTCSEEECCSSCC-SCCCSC--C--CTTCSEEECCSSC-CSCCC-------------CCCTTCCEEECCSS-CCSCCCC-
T ss_pred CCccEEEeCCCCC-CccCHh--H--cCCCCEEECcCCC-Ccccc-------------cccCCCCEEEccCC-CCCCcch-
Confidence 4899999999765 445542 2 3789999999874 44433 13589999999987 4555443
Q ss_pred CCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccc
Q 047829 213 TGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKV 292 (407)
Q Consensus 213 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 292 (407)
+ ..+|+.|+++++ .++.++. .+++|+.|+++++..- .+ + ..+++|+.|+++++ .+
T Consensus 118 ---l--~~~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N~l~-~l----------p--~~l~~L~~L~Ls~N-~L 172 (571)
T 3cvr_A 118 ---L--PASLKHLDVDNN-QLTMLPE-----LPALLEYINADNNQLT-ML----------P--ELPTSLEVLSVRNN-QL 172 (571)
T ss_dssp ---C--CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCS-CC----------C--CCCTTCCEEECCSS-CC
T ss_pred ---h--hcCCCEEECCCC-cCCCCCC-----cCccccEEeCCCCccC-cC----------C--CcCCCcCEEECCCC-CC
Confidence 1 128999999885 5777654 3899999999887632 11 1 14679999999984 56
Q ss_pred ccccccccccccccCCcCceeeccCcccccccccccccccc-------CEEEeccCcCcccccCchhhhccccCCEEEEe
Q 047829 293 QHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENL-------ATLKVSKCHGLINLLTLSTSESLVNLERMKIT 365 (407)
Q Consensus 293 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L-------~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 365 (407)
+.+|. + .++|+.|+++++ .++.+|. +.. +| +.|++++ +.+..+ +..+ ..+++|+.|+++
T Consensus 173 ~~lp~--l-----~~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~l-p~~l-~~l~~L~~L~L~ 238 (571)
T 3cvr_A 173 TFLPE--L-----PESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHI-PENI-LSLDPTCTIILE 238 (571)
T ss_dssp SCCCC--C-----CTTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS-SCCCCC-CGGG-GGSCTTEEEECC
T ss_pred CCcch--h-----hCCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC-Ccceec-CHHH-hcCCCCCEEEee
Confidence 66765 3 278999999987 4667776 433 77 9999998 567776 3333 358999999999
Q ss_pred cccchhhh
Q 047829 366 DCKMMEEI 373 (407)
Q Consensus 366 ~c~~l~~~ 373 (407)
+++--..+
T Consensus 239 ~N~l~~~~ 246 (571)
T 3cvr_A 239 DNPLSSRI 246 (571)
T ss_dssp SSSCCHHH
T ss_pred CCcCCCcC
Confidence 98543333
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=87.71 Aligned_cols=152 Identities=8% Similarity=0.009 Sum_probs=108.0
Q ss_pred ccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccccc
Q 047829 195 LSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDE 274 (407)
Q Consensus 195 L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 274 (407)
-+.+++++. .++.++.. -++.++.|++.+ +.++.+++...+..+++|+.|+++++.. +.+.+ ..
T Consensus 13 ~~~l~~s~n-~l~~iP~~-----~~~~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~--------~~ 76 (220)
T 2v70_A 13 GTTVDCSNQ-KLNKIPEH-----IPQYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEE--------GA 76 (220)
T ss_dssp TTEEECCSS-CCSSCCSC-----CCTTCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSSCC-CEECT--------TT
T ss_pred CCEeEeCCC-CcccCccC-----CCCCCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCCcC-CEECH--------HH
Confidence 346777654 45555432 245678999988 4677776555566799999999988753 22211 12
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
+..+++|+.|++++ +.++.++...+.. +++|++|+++++..-...|..+..+++|++|++++ +.+..+.+ ....
T Consensus 77 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~ 150 (220)
T 2v70_A 77 FEGASGVNEILLTS-NRLENVQHKMFKG---LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAP-GAFD 150 (220)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCGGGGTT---CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCT-TTTT
T ss_pred hCCCCCCCEEECCC-CccCccCHhHhcC---CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECH-HHhc
Confidence 56789999999998 4677777665554 88999999998764334456678899999999998 56776644 3456
Q ss_pred ccccCCEEEEeccc
Q 047829 355 SLVNLERMKITDCK 368 (407)
Q Consensus 355 ~l~~L~~L~i~~c~ 368 (407)
.+++|+.|++.+++
T Consensus 151 ~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 151 TLHSLSTLNLLANP 164 (220)
T ss_dssp TCTTCCEEECCSCC
T ss_pred CCCCCCEEEecCcC
Confidence 78999999998763
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.81 E-value=6.4e-09 Score=86.14 Aligned_cols=129 Identities=20% Similarity=0.199 Sum_probs=58.2
Q ss_pred CCCccEEeEecCCCCc--cccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccc
Q 047829 219 LPMFWSLTIENCPDME--TFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLW 296 (407)
Q Consensus 219 ~~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~ 296 (407)
+++|+.|++.+|. ++ .+ +.. ...+++|+.|++++|. ++.+ .....+++|+.|+++++ .+....
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i-~~~-~~~l~~L~~L~l~~n~-l~~~----------~~~~~l~~L~~L~Ls~N-~l~~~~ 87 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKI-EGL-TAEFVNLEFLSLINVG-LISV----------SNLPKLPKLKKLELSEN-RIFGGL 87 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBC-SSC-CGGGGGCCEEEEESSC-CCCC----------SSCCCCSSCCEEEEESC-CCCSCC
T ss_pred cccCCEEECCCCC-CChhhH-HHH-HHhCCCCCEEeCcCCC-CCCh----------hhhccCCCCCEEECcCC-cCchHH
Confidence 4677777777754 44 22 222 2345666666666554 2211 11344555555555553 222211
Q ss_pred ccccccccccCCcCceeeccCccccccc--cccccccccCEEEeccCcCcccccC--chhhhccccCCEEEEecc
Q 047829 297 KENAESNKVFANLKSPEISECSKLQKLV--PASWHLENLATLKVSKCHGLINLLT--LSTSESLVNLERMKITDC 367 (407)
Q Consensus 297 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~i~~c 367 (407)
...+ ..+++|+.|+++++ .++.++ ..+..+++|++|+++++ .+...++ ......+++|++|++.+|
T Consensus 88 ~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 88 DMLA---EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CHHH---HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HHHH---hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 1111 11455555555554 233332 33444555555555543 3333321 012334455555555554
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-08 Score=87.12 Aligned_cols=151 Identities=13% Similarity=0.012 Sum_probs=109.7
Q ss_pred cccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccc
Q 047829 194 SLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFD 273 (407)
Q Consensus 194 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 273 (407)
+.+.++..+. .+..++.. -+++|+.|++.++ .+..+.+.. +..+++|++|+++++.. ..+...
T Consensus 20 s~~~v~c~~~-~l~~ip~~-----~~~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~N~l-~~i~~~-------- 82 (229)
T 3e6j_A 20 SGTTVDCRSK-RHASVPAG-----IPTNAQILYLHDN-QITKLEPGV-FDSLINLKELYLGSNQL-GALPVG-------- 82 (229)
T ss_dssp ETTEEECTTS-CCSSCCSC-----CCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCC-CCCCTT--------
T ss_pred eCCEeEccCC-CcCccCCC-----CCCCCCEEEcCCC-ccCccCHHH-hhCccCCcEEECCCCCC-CCcChh--------
Confidence 4555666543 45555432 2478999999885 577765544 34589999999988763 322111
Q ss_pred cccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhh
Q 047829 274 EKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 274 ~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
.+..+++|+.|++++ +.++.++...+.. +++|+.|+++++. ++.+|..+..+++|++|++++ +.+..+++ ...
T Consensus 83 ~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~---l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~-~~~ 155 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGT-NQLTVLPSAVFDR---LVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQ-NQLKSIPH-GAF 155 (229)
T ss_dssp TTTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCS-SCCCCCCT-TTT
T ss_pred hcccCCCcCEEECCC-CcCCccChhHhCc---chhhCeEeccCCc-ccccCcccccCCCCCEEECCC-CcCCccCH-HHH
Confidence 145689999999998 4777777765554 8899999999864 678888888999999999998 57777643 445
Q ss_pred hccccCCEEEEeccc
Q 047829 354 ESLVNLERMKITDCK 368 (407)
Q Consensus 354 ~~l~~L~~L~i~~c~ 368 (407)
..+++|+.|++.+++
T Consensus 156 ~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred hCCCCCCEEEeeCCC
Confidence 678999999998763
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-08 Score=98.12 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=23.0
Q ss_pred ccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 19 ELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 19 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
+|+.|+++++ ++..+|... +++|++|+++++ .+..+| ..+++|++|++.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l----~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls 108 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL----PPQITVLEITQN-ALISLP---ELPASLEYLDAC 108 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC----CTTCSEEECCSS-CCSCCC---CCCTTCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhH----cCCCCEEECcCC-CCcccc---cccCCCCEEEcc
Confidence 4555555553 344433321 245555555555 444454 334555555553
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.2e-08 Score=84.20 Aligned_cols=148 Identities=14% Similarity=0.043 Sum_probs=103.4
Q ss_pred CCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccc
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHL 271 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 271 (407)
.+++++|+++++ .+..+.. ..+..+++|++|++.++ +++.+++.. +..+++|++|+++++..- .+.+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~-~~~~------- 93 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPN--GVFDELTSLTQLYLGGN-KLQSLPNGV-FNKLTSLTYLNLSTNQLQ-SLPN------- 93 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCT--TTTTTCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCCC-CCCT-------
T ss_pred CCCCcEEEcCCC-ccCcCCh--hhhcccccCcEEECCCC-ccCccChhh-cCCCCCcCEEECCCCcCC-ccCH-------
Confidence 478999999986 3444322 22457899999999885 677665543 345899999999887532 2211
Q ss_pred cccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCc
Q 047829 272 FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTL 350 (407)
Q Consensus 272 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~ 350 (407)
..+..+++|+.|++++ +.++.++...+.. +++|+.|+++++. ++.+++. +..+++|++|++++++..
T Consensus 94 -~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~---l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 94 -GVFDKLTQLKELALNT-NQLQSLPDGVFDK---LTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp -TTTTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred -hHhcCccCCCEEEcCC-CcCcccCHhHhcc---CCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee------
Confidence 1145689999999998 4677777665544 8999999999874 5566554 677999999999986321
Q ss_pred hhhhccccCCEEEEecc
Q 047829 351 STSESLVNLERMKITDC 367 (407)
Q Consensus 351 ~~~~~l~~L~~L~i~~c 367 (407)
..++.|+.|.++.+
T Consensus 162 ---~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWIN 175 (208)
T ss_dssp ---CCTTTTHHHHHHHH
T ss_pred ---cCCCCHHHHHHHHH
Confidence 23455666655544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.79 E-value=6.1e-09 Score=86.25 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=17.0
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
+++|+.|++++|.. +.++....+..+++|+.|++++|
T Consensus 94 l~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 94 LPNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CTTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSS
T ss_pred CCCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCC
Confidence 45555555555432 22222123445555555555554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.8e-08 Score=86.24 Aligned_cols=150 Identities=15% Similarity=0.045 Sum_probs=104.0
Q ss_pred cEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccc
Q 047829 196 SWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEK 275 (407)
Q Consensus 196 ~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 275 (407)
+.++..+. +++.++.. -+++|+.|++.+. .++.+++.. +..+++|+.|+++++..- .+.+ ..+
T Consensus 14 ~~v~c~~~-~l~~iP~~-----l~~~l~~L~l~~n-~i~~i~~~~-~~~l~~L~~L~Ls~N~i~-~~~~--------~~~ 76 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTN-----LPETITEIRLEQN-TIKVIPPGA-FSPYKKLRRIDLSNNQIS-ELAP--------DAF 76 (220)
T ss_dssp TEEECTTS-CCSSCCSS-----CCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECCSSCCC-EECT--------TTT
T ss_pred CEEEcCCC-CcCcCCCc-----cCcCCCEEECCCC-cCCCcCHhH-hhCCCCCCEEECCCCcCC-CcCH--------HHh
Confidence 34454432 45554432 1368999999884 677776544 345899999999887532 2211 225
Q ss_pred cccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhc
Q 047829 276 VTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSES 355 (407)
Q Consensus 276 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 355 (407)
..+++|+.|++++ +.++.++...+.. +++|+.|+++++..-...+..+..+++|++|++++ +.+..+++ .....
T Consensus 77 ~~l~~L~~L~Ls~-N~l~~l~~~~f~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~ 150 (220)
T 2v9t_B 77 QGLRSLNSLVLYG-NKITELPKSLFEG---LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAK-GTFSP 150 (220)
T ss_dssp TTCSSCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT-TTTTT
T ss_pred hCCcCCCEEECCC-CcCCccCHhHccC---CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECH-HHHhC
Confidence 6788999999998 5677888766554 88999999998753333345677889999999998 56776643 34557
Q ss_pred cccCCEEEEeccc
Q 047829 356 LVNLERMKITDCK 368 (407)
Q Consensus 356 l~~L~~L~i~~c~ 368 (407)
+++|+.|++.+++
T Consensus 151 l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 151 LRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 8899999988753
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=91.51 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=106.8
Q ss_pred ceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhh
Q 047829 14 RIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNST 93 (407)
Q Consensus 14 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (407)
...+++|+.|+++++ +++.++ ....+++|++|++++| .+..++. +..+++|++|++.++.
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-------------- 96 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-------------- 96 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC--------------
T ss_pred hhhcCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc--------------
Confidence 345789999999996 577665 2457899999999999 7888886 8999999999996521
Q ss_pred HHHHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccc
Q 047829 94 IQKCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLE 173 (407)
Q Consensus 94 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 173 (407)
+..++. ... ++|++|+++++. ++.... + ..+++|+.|++++|... +++ .+..+++|+.|++++|. +.
T Consensus 97 l~~l~~-~~~-~~L~~L~L~~N~-l~~~~~---l--~~l~~L~~L~Ls~N~i~-~~~---~l~~l~~L~~L~L~~N~-i~ 163 (263)
T 1xeu_A 97 LKNLNG-IPS-ACLSRLFLDNNE-LRDTDS---L--IHLKNLEILSIRNNKLK-SIV---MLGFLSKLEVLDLHGNE-IT 163 (263)
T ss_dssp CSCCTT-CCC-SSCCEEECCSSC-CSBSGG---G--TTCTTCCEEECTTSCCC-BCG---GGGGCTTCCEEECTTSC-CC
T ss_pred cCCcCc-ccc-CcccEEEccCCc-cCCChh---h--cCcccccEEECCCCcCC-CCh---HHccCCCCCEEECCCCc-Cc
Confidence 111222 122 889999999986 544321 2 34899999999998654 432 47899999999999874 33
Q ss_pred eeeccCCccccccccCCCCCcccEEeccccc
Q 047829 174 EVFHLEELSAKEEHIGPLFPSLSWLRLIDLP 204 (407)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (407)
.+.. + ..+++|+.|++.+++
T Consensus 164 ~~~~----------l-~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 164 NTGG----------L-TRLKKVNWIDLTGQK 183 (263)
T ss_dssp BCTT----------S-TTCCCCCEEEEEEEE
T ss_pred chHH----------h-ccCCCCCEEeCCCCc
Confidence 3311 1 135899999998764
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.4e-08 Score=84.98 Aligned_cols=131 Identities=14% Similarity=0.120 Sum_probs=96.2
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
++++.|++.+. .+..+.. ..+..+++|+.|++.++ .++.+.+.. +..+++|++|+++++..- .+.+.
T Consensus 32 ~~l~~L~l~~n-~i~~i~~--~~~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~------- 98 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPP--GAFSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGNKIT-ELPKS------- 98 (220)
T ss_dssp TTCCEEECCSS-CCCEECT--TSSTTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSSCCC-CCCTT-------
T ss_pred cCCCEEECCCC-cCCCcCH--hHhhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCCcCC-ccCHh-------
Confidence 68999999976 4554432 23567899999999885 577776655 345899999999887532 22111
Q ss_pred ccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCc
Q 047829 273 DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCH 342 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 342 (407)
.+..+++|+.|++++ +.+..++...+.. +++|+.|+++++. ++.+++ .+..+++|++|++++++
T Consensus 99 -~f~~l~~L~~L~L~~-N~l~~~~~~~~~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 -LFEGLFSLQLLLLNA-NKINCLRVDAFQD---LHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp -TTTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -HccCCCCCCEEECCC-CCCCEeCHHHcCC---CCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 145689999999999 4677776666554 8999999999875 555554 46789999999999843
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.5e-08 Score=85.47 Aligned_cols=131 Identities=13% Similarity=0.001 Sum_probs=95.2
Q ss_pred CCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccc
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHL 271 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 271 (407)
.++|+.|+++++. +..+.. ..+..+++|+.|++.++ .+..+++.. +..+++|+.|+++++. +..+.+.
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~--~~~~~l~~L~~L~L~~N-~l~~i~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~------ 106 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEP--GVFDSLINLKELYLGSN-QLGALPVGV-FDSLTQLTVLDLGTNQ-LTVLPSA------ 106 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCT--TTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTT------
T ss_pred CCCCCEEEcCCCc-cCccCH--HHhhCccCCcEEECCCC-CCCCcChhh-cccCCCcCEEECCCCc-CCccChh------
Confidence 3799999999864 443321 23557899999999985 566665543 4568999999998874 3332211
Q ss_pred cccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCc
Q 047829 272 FDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCH 342 (407)
Q Consensus 272 ~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~ 342 (407)
.+..+++|+.|++++ +.++.++.. +..+++|+.|+++++ .++.++. .+..+++|++|++++++
T Consensus 107 --~~~~l~~L~~L~Ls~-N~l~~lp~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 --VFDRLVHLKELFMCC-NKLTELPRG----IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp --TTTTCTTCCEEECCS-SCCCSCCTT----GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred --HhCcchhhCeEeccC-CcccccCcc----cccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 145689999999998 467777755 234899999999986 4666664 46789999999999854
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.75 E-value=8.3e-09 Score=83.61 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=42.8
Q ss_pred cCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccce
Q 047829 306 FANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDC 385 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~ 385 (407)
+++|+.|+++++.-...+|..+..+++|++|+++++ .+..++.......+++|++|++++| .+..++.- ....+
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~----~~~~~ 136 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDY----RENVF 136 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTH----HHHHH
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHH----HHHHH
Confidence 556666666655432224444445666666666663 3444321123445666666666666 33333200 00123
Q ss_pred eEecccceEecC
Q 047829 386 IVFRKLEYLGLD 397 (407)
Q Consensus 386 ~~~~~L~~L~l~ 397 (407)
..+++|++|+++
T Consensus 137 ~~l~~L~~L~l~ 148 (149)
T 2je0_A 137 KLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEETTB
T ss_pred HHCCCcccccCC
Confidence 455666666654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.74 E-value=7.1e-09 Score=83.98 Aligned_cols=55 Identities=25% Similarity=0.220 Sum_probs=28.4
Q ss_pred ecccceeeeCcccccc--cccccccccccCCccEEeecCCCccccccccccCCCCcceeEEE
Q 047829 17 FSELKFLILDYLPRLT--SFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVI 76 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~--~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 76 (407)
+++|+.|+++++. +. .++.. ...+++|++|++++| .+..+ ..+..+++|++|++.
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGL--TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSC--CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECC
T ss_pred CccCeEEEccCCc-CChhHHHHH--HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECC
Confidence 3556666666642 33 33321 234566666666665 44444 344555556665553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-07 Score=85.17 Aligned_cols=81 Identities=16% Similarity=0.100 Sum_probs=59.7
Q ss_pred cCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccC-EEEeccCcCcccccCchhhhc
Q 047829 278 FPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLA-TLKVSKCHGLINLLTLSTSES 355 (407)
Q Consensus 278 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~ 355 (407)
+++|+.+++.+ ..++.++...|.. +++|+.+++.+. ++.+++ .+..+++|+ .+.+.+ .++.+.. ..+.+
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF~~---~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTFAQ---KKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-GAFMG 295 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTTTT---CTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-TTTTT
T ss_pred cCCCeEEECCC-CCcceecHhhhhC---CCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-hhhhC
Confidence 67899999987 4578888877765 888999988763 666664 356788888 898875 6666643 34567
Q ss_pred cccCCEEEEecc
Q 047829 356 LVNLERMKITDC 367 (407)
Q Consensus 356 l~~L~~L~i~~c 367 (407)
+++|+.+++.+.
T Consensus 296 c~~L~~l~l~~n 307 (329)
T 3sb4_A 296 CDNLRYVLATGD 307 (329)
T ss_dssp CTTEEEEEECSS
T ss_pred CccCCEEEeCCC
Confidence 888888887554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.62 E-value=7.1e-08 Score=80.46 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=90.6
Q ss_pred cccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 216 IIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 216 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
+..+++|+.|++.++ .++.++ .+....++|+.|+++++.. +.+ ..+..+++|+.|++++ +.++.+
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~--~~~~~~~~L~~L~Ls~N~l-~~~----------~~l~~l~~L~~L~Ls~-N~l~~~ 79 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIE--NLGATLDQFDAIDFSDNEI-RKL----------DGFPLLRRLKTLLVNN-NRICRI 79 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCC--CGGGGTTCCSEEECCSSCC-CEE----------CCCCCCSSCCEEECCS-SCCCEE
T ss_pred cCCcCCceEEEeeCC-CCchhH--HhhhcCCCCCEEECCCCCC-Ccc----------cccccCCCCCEEECCC-Cccccc
Confidence 446788999999886 566552 2344345899999988753 221 2256688899999988 456666
Q ss_pred cccccccccccCCcCceeeccCcccccccc--ccccccccCEEEeccCcCcccccCc--hhhhccccCCEEEEeccc
Q 047829 296 WKENAESNKVFANLKSPEISECSKLQKLVP--ASWHLENLATLKVSKCHGLINLLTL--STSESLVNLERMKITDCK 368 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~i~~c~ 368 (407)
+...+.. +++|+.|+++++. +..+|. .+..+++|++|+++++ .+...+.. .....+++|+.|++.++.
T Consensus 80 ~~~~~~~---l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 80 GEGLDQA---LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCHHHH---CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred Ccchhhc---CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6553333 7889999998864 566665 5677888999999884 44444221 135677888888888774
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-07 Score=86.51 Aligned_cols=175 Identities=13% Similarity=0.056 Sum_probs=119.7
Q ss_pred cEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccc
Q 047829 196 SWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEK 275 (407)
Q Consensus 196 ~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 275 (407)
+.++..+. +++.++.. -++.++.|++++. +++.+++..+...+++|+.|+++++.. ..+.+ ..+
T Consensus 21 ~~l~c~~~-~l~~iP~~-----~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~--------~~~ 84 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQS-----LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISS--------EAF 84 (361)
T ss_dssp TEEECCSS-CCSSCCSS-----CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCC-CEECT--------TTT
T ss_pred CEEEeCCC-CcCccCcc-----CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcC-CccCh--------hhc
Confidence 45555543 45555432 2456899999884 688877655443689999999988753 22211 125
Q ss_pred cccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhh--
Q 047829 276 VTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTS-- 353 (407)
Q Consensus 276 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-- 353 (407)
..+++|+.|++++ +.+..++...+.. +++|+.|+++++......+..+..+++|++|++++ +.+..++. ...
T Consensus 85 ~~l~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~-~~~~~ 158 (361)
T 2xot_A 85 VPVPNLRYLDLSS-NHLHTLDEFLFSD---LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPV-ELIKD 158 (361)
T ss_dssp TTCTTCCEEECCS-SCCCEECTTTTTT---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCG-GGTC-
T ss_pred cCCCCCCEEECCC-CcCCcCCHHHhCC---CcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCH-HHhcC
Confidence 6789999999999 4677777766554 89999999998764333355678899999999998 56777643 333
Q ss_pred -hccccCCEEEEecccchhhhhccccCCcccceeEecc--cceEecCCCC
Q 047829 354 -ESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRK--LEYLGLDCLP 400 (407)
Q Consensus 354 -~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~--L~~L~l~~cp 400 (407)
..+++|+.|+++++ .+..++ +..+..++. ++.|++.+.|
T Consensus 159 ~~~l~~L~~L~L~~N-~l~~l~-------~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 159 GNKLPKLMLLDLSSN-KLKKLP-------LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ---CTTCCEEECCSS-CCCCCC-------HHHHHHSCHHHHTTEECCSSC
T ss_pred cccCCcCCEEECCCC-CCCccC-------HHHhhhccHhhcceEEecCCC
Confidence 46899999999988 444443 122334554 4788888865
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-07 Score=79.66 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=28.0
Q ss_pred ceeeeCcccccccccccccccccCCccEEeecCCCcccccccc--ccCCCCcceeEEE
Q 047829 21 KFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQG--ILSTPKLHKVQVI 76 (407)
Q Consensus 21 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~--~~~l~~L~~L~l~ 76 (407)
+++++++ .+++.+|... ...|++|+++++ .+..++.. +..+++|++|++.
T Consensus 11 ~~l~~s~-~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls 62 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDI----PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELK 62 (192)
T ss_dssp TEEECTT-SCCSSCCSCC----CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECC
T ss_pred CEEEcCC-CCcCcCccCC----CCCCCEEECCCC-cCCccCCccccccCCCCCEEECC
Confidence 4555555 3455555431 246777777776 55555542 5566666666664
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-07 Score=78.87 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=19.4
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
+++|+.|++++|.... +++ ..+..+++|+.|++++|
T Consensus 77 l~~L~~L~Ls~N~l~~-i~~-~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRC-IPP-RTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CTTCCEEECCSSCCCB-CCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCccCE-eCH-HHhCCCCCCCEEECCCC
Confidence 5566666666654332 222 23556666666666654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-07 Score=75.90 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=65.2
Q ss_pred CcccEEeccccccccccccCCCcccc-CCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIE-LPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHL 271 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 271 (407)
++|+.|++.++ .+..++. +.. .++|+.|+++++ .++.+. ....+++|+.|+++++.. ..+.+.
T Consensus 19 ~~L~~L~l~~n-~l~~i~~----~~~~~~~L~~L~Ls~N-~l~~~~---~l~~l~~L~~L~Ls~N~l-~~~~~~------ 82 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPVIEN----LGATLDQFDAIDFSDN-EIRKLD---GFPLLRRLKTLLVNNNRI-CRIGEG------ 82 (176)
T ss_dssp TSCEEEECTTS-CCCSCCC----GGGGTTCCSEEECCSS-CCCEEC---CCCCCSSCCEEECCSSCC-CEECSC------
T ss_pred CCceEEEeeCC-CCchhHH----hhhcCCCCCEEECCCC-CCCccc---ccccCCCCCEEECCCCcc-cccCcc------
Confidence 56666666665 3333311 222 336777777664 344441 123466677777766542 111110
Q ss_pred cccccccCCcceEecccccccccccc-cccccccccCCcCceeeccCccccccccc----cccccccCEEEeccC
Q 047829 272 FDEKVTFPQLRFLELSRLHKVQHLWK-ENAESNKVFANLKSPEISECSKLQKLVPA----SWHLENLATLKVSKC 341 (407)
Q Consensus 272 ~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~~~~~~~~~L~~L~l~~c~~l~~l~~~----~~~~~~L~~L~l~~c 341 (407)
....+++|+.|+++++ .++.++. ..+ ..+++|+.|++++++ +..+|.. +..+++|+.|+++++
T Consensus 83 --~~~~l~~L~~L~L~~N-~i~~~~~~~~l---~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 83 --LDQALPDLTELILTNN-SLVELGDLDPL---ASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp --HHHHCTTCCEEECCSC-CCCCGGGGGGG---GGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred --hhhcCCCCCEEECCCC-cCCcchhhHhh---hcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 0244667777777663 4455443 122 236667777776654 3344443 556667777766654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-07 Score=93.12 Aligned_cols=127 Identities=13% Similarity=0.164 Sum_probs=90.6
Q ss_pred CCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcceecc
Q 047829 44 PSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEIWH 123 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 123 (407)
..|++|+++++ .+..+|. ++.+++|++|++.+ +.+..+|..+..+++|++|+++++. ++.++
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~--------------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp- 502 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH--------------NRLRALPPALAALRCLEVLQASDNA-LENVD- 502 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCS--------------SCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-
T ss_pred cCceEEEecCC-CCCCCcC-ccccccCcEeecCc--------------ccccccchhhhcCCCCCEEECCCCC-CCCCc-
Confidence 46999999999 8888986 89999999999964 2233466777888999999999986 55444
Q ss_pred CCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEec
Q 047829 124 GQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRL 200 (407)
Q Consensus 124 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 200 (407)
. + ..+++|+.|++++|.... ++....++.+++|+.|++++|. +..++... ..+...+|+|+.|++
T Consensus 503 ~--l--~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~------~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 G--V--ANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQ------ERLAEMLPSVSSILT 567 (567)
T ss_dssp G--G--TTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSG-GGGSSSCT------THHHHHCTTCSEEEC
T ss_pred c--c--CCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCc-CCCCccHH------HHHHHHCcccCccCC
Confidence 2 2 458999999999986644 3212348899999999999975 33332211 111113688888853
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=73.86 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=37.6
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
+..+++|+.|++++ +.++.++...+.. +++|+.|+++++..-...|..+..+++|++|+++++
T Consensus 74 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 74 FEGASHIQELQLGE-NKIKEISNKMFLG---LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TTTCTTCCEEECCS-CCCCEECSSSSTT---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCcccCCEEECCC-CcCCccCHHHhcC---CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 34456666666666 3455555444433 667777777765433334555666777777777763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-07 Score=94.55 Aligned_cols=152 Identities=16% Similarity=0.080 Sum_probs=93.8
Q ss_pred cccCCccEEe-ecCCCccccccc------cccC--CCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEE
Q 047829 41 LEFPSLERVS-VTFCPDMKTFSQ------GILS--TPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQ 111 (407)
Q Consensus 41 ~~~~~L~~L~-l~~c~~l~~lp~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~ 111 (407)
..+++|+.|+ ++.. .+..++. .+.. ...|++|++.+ +.+..+|. +..+++|++|+
T Consensus 406 ~~l~~L~~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~--------------n~l~~lp~-~~~l~~L~~L~ 469 (567)
T 1dce_A 406 QYFSTLKAVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAH--------------KDLTVLCH-LEQLLLVTHLD 469 (567)
T ss_dssp HHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTT--------------SCCSSCCC-GGGGTTCCEEE
T ss_pred HHHHhcccCcchhhc-ccchhhhhhhhcccccccCccCceEEEecC--------------CCCCCCcC-ccccccCcEee
Confidence 4577888887 3332 2222221 1111 13588898854 12223444 67779999999
Q ss_pred eccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCC
Q 047829 112 LSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPL 191 (407)
Q Consensus 112 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (407)
++++. ++.++... ..+++|+.|++++|.... ++ .++.+++|+.|++++|. ++.+.... .+. .
T Consensus 470 Ls~N~-l~~lp~~~----~~l~~L~~L~Ls~N~l~~-lp---~l~~l~~L~~L~Ls~N~-l~~~~~p~-------~l~-~ 531 (567)
T 1dce_A 470 LSHNR-LRALPPAL----AALRCLEVLQASDNALEN-VD---GVANLPRLQELLLCNNR-LQQSAAIQ-------PLV-S 531 (567)
T ss_dssp CCSSC-CCCCCGGG----GGCTTCCEEECCSSCCCC-CG---GGTTCSSCCEEECCSSC-CCSSSTTG-------GGG-G
T ss_pred cCccc-ccccchhh----hcCCCCCEEECCCCCCCC-Cc---ccCCCCCCcEEECCCCC-CCCCCCcH-------HHh-c
Confidence 99986 55443322 558999999999986654 43 48999999999999874 33331000 011 3
Q ss_pred CCcccEEeccccccccccccCCC-ccccCCCccEEeE
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFTG-NIIELPMFWSLTI 227 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~~-~~~~~~~L~~L~l 227 (407)
+++|+.|++++++ +..++.... ....+|+|+.|++
T Consensus 532 l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 5899999999874 444333222 2334788988853
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-07 Score=78.43 Aligned_cols=88 Identities=7% Similarity=0.191 Sum_probs=53.5
Q ss_pred CcceEecccccccccccccccccccccCCcCceeeccCccccccc-ccccc----ccccCEEEeccCcCcccccCchhhh
Q 047829 280 QLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLV-PASWH----LENLATLKVSKCHGLINLLTLSTSE 354 (407)
Q Consensus 280 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~----~~~L~~L~l~~c~~l~~~~~~~~~~ 354 (407)
+|+.|++++|. ++.. ++..+..+++|+.|++++|..+++.- ..+.. .++|++|++++|..+++.....+ .
T Consensus 62 ~L~~LDLs~~~-Itd~---GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~ 136 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI---GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H 136 (176)
T ss_dssp CEEEEEEESCC-CCGG---GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred eEeEEeCcCCC-ccHH---HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence 67888888764 4433 23323347777888887777665421 11122 34677777777777766533333 3
Q ss_pred ccccCCEEEEecccchhh
Q 047829 355 SLVNLERMKITDCKMMEE 372 (407)
Q Consensus 355 ~l~~L~~L~i~~c~~l~~ 372 (407)
.+++|++|++++|+.+.+
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 567777777777776544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=73.61 Aligned_cols=104 Identities=12% Similarity=0.037 Sum_probs=49.2
Q ss_pred CCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccc
Q 047829 220 PMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKEN 299 (407)
Q Consensus 220 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~ 299 (407)
++|+.|++.+. .++.++ . .+..+++|+.|+++++..- .+.+ ..+..+++|+.|++++ +.++.++...
T Consensus 31 ~~l~~L~L~~n-~i~~ip-~-~~~~l~~L~~L~Ls~N~i~-~i~~--------~~f~~l~~L~~L~Ls~-N~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVP-K-ELSNYKHLTLIDLSNNRIS-TLSN--------QSFSNMTQLLTLILSY-NRLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCSS-CCCSCC-G-GGGGCTTCCEEECCSSCCC-CCCT--------TTTTTCTTCCEEECCS-SCCCBCCTTT
T ss_pred CCCCEEECCCC-cCchhH-H-HhhcccCCCEEECCCCcCC-EeCH--------hHccCCCCCCEEECCC-CccCEeCHHH
Confidence 46666666653 344433 1 2334566666666554321 1110 1133455556666555 3344444443
Q ss_pred cccccccCCcCceeeccCcccccccc-ccccccccCEEEecc
Q 047829 300 AESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSK 340 (407)
Q Consensus 300 ~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~ 340 (407)
+.. +++|+.|+++++. ++.+|+ .+..+++|++|++++
T Consensus 98 f~~---l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 98 FDG---LKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTT---CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred hCC---CCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCC
Confidence 332 5555555555532 334433 234455555555554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-06 Score=71.75 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=54.6
Q ss_pred CCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccc
Q 047829 219 LPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKE 298 (407)
Q Consensus 219 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~ 298 (407)
+++|+.|++.++ +++.+++.. ...+++|++|+++++.. ..+.+. ....+++|+.|++++ +.++.++..
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~--------~~~~l~~L~~L~l~~-N~l~~~~~~ 94 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLPHGV-FDKLTQLTKLSLSQNQI-QSLPDG--------VFDKLTKLTILYLHE-NKLQSLPNG 94 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSCC-CCCCTT--------TTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred CCCCcEEEeCCC-cccEeCHHH-hcCcccccEEECCCCcc-eEeChh--------HccCCCccCEEECCC-CCccccCHH
Confidence 356777777664 355544332 23466666666665532 211110 123456666666665 344454444
Q ss_pred ccccccccCCcCceeeccCccccccccc-cccccccCEEEeccC
Q 047829 299 NAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKC 341 (407)
Q Consensus 299 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c 341 (407)
.+.. +++|+.|+++++ .++.+|.. +..+++|++|+++++
T Consensus 95 ~~~~---l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 95 VFDK---LTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTTT---CTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred HhhC---CcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 3332 556666666654 34444443 244566666666553
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-07 Score=93.97 Aligned_cols=110 Identities=14% Similarity=0.034 Sum_probs=83.4
Q ss_pred ccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcc
Q 047829 40 TLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLK 119 (407)
Q Consensus 40 ~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 119 (407)
...++.|+.|+++++ .+..+|..++.+++|++|+|.+ +.+..+|..+..+++|++|+++++. ++
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~--------------N~l~~lp~~~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNG--------------NSLTELPAEIKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTT--------------SCCSCCCGGGGGGTTCCEEECTTSC-CS
T ss_pred hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeC--------------CcCcccChhhhCCCCCCEEeCcCCc-CC
Confidence 446789999999999 6778998888999999999954 2233466677788999999999987 55
Q ss_pred eeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccc
Q 047829 120 EIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSL 172 (407)
Q Consensus 120 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (407)
.++... ..+++|+.|.+.+|.. +.++.. ++.+++|+.|++++|.-.
T Consensus 284 ~lp~~~----~~l~~L~~L~L~~N~l-~~lp~~--~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 284 SLPAEL----GSCFQLKYFYFFDNMV-TTLPWE--FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCSSG----GGGTTCSEEECCSSCC-CCCCSS--TTSCTTCCCEECTTSCCC
T ss_pred ccChhh----cCCCCCCEEECCCCCC-CccChh--hhcCCCccEEeCCCCccC
Confidence 443332 4588999999998855 455543 889999999999987543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=72.17 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=85.7
Q ss_pred cEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccccc
Q 047829 223 WSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAES 302 (407)
Q Consensus 223 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~ 302 (407)
+.+++.+ .+++.++... .++|++|+++++.. ..+.+. ....+++|+.|++++ +.++.++...+..
T Consensus 10 ~~l~~~~-~~l~~~p~~~----~~~l~~L~l~~n~l-~~~~~~--------~~~~l~~L~~L~l~~-n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 10 TEIRCNS-KGLTSVPTGI----PSSATRLELESNKL-QSLPHG--------VFDKLTQLTKLSLSQ-NQIQSLPDGVFDK 74 (177)
T ss_dssp TEEECCS-SCCSSCCTTC----CTTCSEEECCSSCC-CCCCTT--------TTTTCTTCSEEECCS-SCCCCCCTTTTTT
T ss_pred CEEEecC-CCCccCCCCC----CCCCcEEEeCCCcc-cEeCHH--------HhcCcccccEEECCC-CcceEeChhHccC
Confidence 4455444 3456665332 57899999988753 222111 145688999999998 4677777665544
Q ss_pred ccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 303 NKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 303 ~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+++|+.|+++++. ++.+++. +..+++|++|+++++ .+..+++ .....+++|++|++.+++
T Consensus 75 ---l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 75 ---LTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ---CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred ---CCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCCC
Confidence 8899999999864 5555543 577899999999884 6766643 445678899999998774
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-05 Score=75.24 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=7.1
Q ss_pred hhccccCCeeEEcc
Q 047829 155 LRCLNNLGWLEVRN 168 (407)
Q Consensus 155 ~~~l~~L~~L~l~~ 168 (407)
+..+++|+.+++..
T Consensus 176 F~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 176 FYYCYNLKKADLSK 189 (401)
T ss_dssp TTTCTTCCEEECTT
T ss_pred hhCcccCCeeecCC
Confidence 44455555555543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-05 Score=74.20 Aligned_cols=55 Identities=9% Similarity=-0.065 Sum_probs=27.6
Q ss_pred CcccEEeccccccccccccCCCccccCCCcc-EEeEecCCCCccccCcccccccCCCceeecc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFW-SLTIENCPDMETFISNSTSILHMTADNKEPQ 254 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 254 (407)
++|+++.+.+. ++.+.. ..+.++++|+ .+.+.+ +++.+.... +..|++|+.+++.
T Consensus 250 ~~L~~l~l~~n--i~~I~~--~aF~~~~~L~~~l~l~~--~l~~I~~~a-F~~c~~L~~l~l~ 305 (329)
T 3sb4_A 250 KYLLKIKLPHN--LKTIGQ--RVFSNCGRLAGTLELPA--SVTAIEFGA-FMGCDNLRYVLAT 305 (329)
T ss_dssp TTCCEEECCTT--CCEECT--TTTTTCTTCCEEEEECT--TCCEECTTT-TTTCTTEEEEEEC
T ss_pred CCCCEEECCcc--cceehH--HHhhCChhccEEEEEcc--cceEEchhh-hhCCccCCEEEeC
Confidence 45666665542 444322 2244555666 666654 455554433 3346666666653
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.21 E-value=7.1e-05 Score=70.75 Aligned_cols=222 Identities=8% Similarity=0.016 Sum_probs=130.0
Q ss_pred CCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCcccc
Q 047829 105 RDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAK 184 (407)
Q Consensus 105 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 184 (407)
.+|+.+.+.. +++.+.... | ..+.+|+.+.+.++. +..++. +.+. ..+|+.+.+.. ++..++... +
T Consensus 157 ~~L~~i~lp~--~l~~I~~~a-F--~~c~~L~~l~l~~n~-l~~I~~-~aF~-~~~L~~l~lp~--~l~~I~~~a----F 222 (401)
T 4fdw_A 157 STVQEIVFPS--TLEQLKEDI-F--YYCYNLKKADLSKTK-ITKLPA-STFV-YAGIEEVLLPV--TLKEIGSQA----F 222 (401)
T ss_dssp CCCCEEECCT--TCCEECSST-T--TTCTTCCEEECTTSC-CSEECT-TTTT-TCCCSEEECCT--TCCEECTTT----T
T ss_pred CCceEEEeCC--CccEehHHH-h--hCcccCCeeecCCCc-ceEech-hhEe-ecccCEEEeCC--chheehhhH----h
Confidence 4578887765 355444333 4 236788888887643 333333 3334 47888888863 355544211 1
Q ss_pred ccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhh
Q 047829 185 EEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLV 264 (407)
Q Consensus 185 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 264 (407)
. ..++|+.+.+.+ +++.+.... +.. .+|+.+.+.+ .++.+.... +..|++|+.+.+.+.........
T Consensus 223 ~-----~~~~L~~l~l~~--~l~~I~~~a--F~~-~~L~~i~lp~--~i~~I~~~a-F~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 223 L-----KTSQLKTIEIPE--NVSTIGQEA--FRE-SGITTVKLPN--GVTNIASRA-FYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp T-----TCTTCCCEECCT--TCCEECTTT--TTT-CCCSEEEEET--TCCEECTTT-TTTCTTCCEEEEESSCCCCCTTC
T ss_pred h-----CCCCCCEEecCC--CccCccccc--ccc-CCccEEEeCC--CccEEChhH-hhCCCCCCEEEeCCccccCCccc
Confidence 1 136788888764 355443222 333 5788888853 566665544 44588888888865432100000
Q ss_pred ccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcC
Q 047829 265 ADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHG 343 (407)
Q Consensus 265 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~ 343 (407)
.-.......+++|+.+.+.. .+..++...|.. +++|+.+.+.+ +++.+.. .+..+ +|+++.+.+. .
T Consensus 290 ----~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~---c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~ 356 (401)
T 4fdw_A 290 ----MIHPYCLEGCPKLARFEIPE--SIRILGQGLLGG---NRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-T 356 (401)
T ss_dssp ----EECTTTTTTCTTCCEECCCT--TCCEECTTTTTT---CCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-S
T ss_pred ----EECHHHhhCCccCCeEEeCC--ceEEEhhhhhcC---CCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-C
Confidence 00112255678899888884 577888777765 78899998854 3555543 34566 8999999873 4
Q ss_pred cccccCchhhhcc-ccCCEEEEecc
Q 047829 344 LINLLTLSTSESL-VNLERMKITDC 367 (407)
Q Consensus 344 l~~~~~~~~~~~l-~~L~~L~i~~c 367 (407)
+..+... ....+ ..+..+.+-.-
T Consensus 357 ~~~l~~~-~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 357 PPQVFEK-VWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCBCCCS-SCCCSCTTCCEEEECGG
T ss_pred Ccccccc-cccCCCCCccEEEeCHH
Confidence 4444332 23334 46778877653
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.6e-08 Score=84.87 Aligned_cols=35 Identities=6% Similarity=0.126 Sum_probs=21.3
Q ss_pred cccCCccEEeecCCCccccccccccCCCCcceeEEEe
Q 047829 41 LEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIV 77 (407)
Q Consensus 41 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 77 (407)
..+++|++|+++++ .+..+| .+..+++|++|++.+
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~ 79 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGR 79 (198)
T ss_dssp HHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEE
T ss_pred hcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCC
Confidence 35666666666666 455555 555566666666644
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.7e-06 Score=71.26 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=51.9
Q ss_pred CCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccccccc-ccCCcCceeeccCccccccc
Q 047829 246 MTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNK-VFANLKSPEISECSKLQKLV 324 (407)
Q Consensus 246 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~ 324 (407)
..|++|++++|. +++ .....+..+++|+.|+|++|..++.-....+.... ..++|++|++++|+++++--
T Consensus 61 ~~L~~LDLs~~~-Itd--------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMS--------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCC-CCG--------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCC-ccH--------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 356777777765 332 12223455677777777777666554333222100 02357777777777665311
Q ss_pred -cccccccccCEEEeccCcCcccc
Q 047829 325 -PASWHLENLATLKVSKCHGLINL 347 (407)
Q Consensus 325 -~~~~~~~~L~~L~l~~c~~l~~~ 347 (407)
..+..+++|++|++++|+.+++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHhcCCCCCEEECCCCCCCCch
Confidence 12345677777777777766653
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.4e-06 Score=86.18 Aligned_cols=108 Identities=17% Similarity=0.057 Sum_probs=69.2
Q ss_pred ccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccc
Q 047829 242 SILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQ 321 (407)
Q Consensus 242 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~ 321 (407)
+..+++|+.|+++++... .+... .+.+++|+.|+|+++ .++.+|.. +..+++|+.|+++++. ++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~---------~~~l~~L~~L~Ls~N-~l~~lp~~----~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISAN---------IFKYDFLTRLYLNGN-SLTELPAE----IKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGG---------GGGCCSCSCCBCTTS-CCSCCCGG----GGGGTTCCEEECTTSC-CS
T ss_pred hccCCCCcEEECCCCCCC-CCChh---------hcCCCCCCEEEeeCC-cCcccChh----hhCCCCCCEEeCcCCc-CC
Confidence 344777888888776532 22111 445777888888773 45566643 2337778888887765 55
Q ss_pred ccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 322 KLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 322 ~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
.+|..+..+++|++|+++++ .+..++ .. +..+++|+.|+++++.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N-~l~~lp-~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDN-MVTTLP-WE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSS-CCCCCC-SS-TTSCTTCCCEECTTSC
T ss_pred ccChhhcCCCCCCEEECCCC-CCCccC-hh-hhcCCCccEEeCCCCc
Confidence 77777777788888888774 555553 22 5567788888887773
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.05 E-value=6.1e-07 Score=76.24 Aligned_cols=154 Identities=17% Similarity=0.110 Sum_probs=99.1
Q ss_pred CccEEeEecC-CCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccc
Q 047829 221 MFWSLTIENC-PDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKEN 299 (407)
Q Consensus 221 ~L~~L~l~~c-~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~ 299 (407)
.|+...+.+. +.++.++. ....+++|++|+++++.. +.+ +....+++|+.|+++++ .++.++..
T Consensus 24 ~l~~~~l~~~~~~l~~l~~--~~~~l~~L~~L~ls~n~l-~~l----------~~~~~l~~L~~L~l~~n-~l~~l~~~- 88 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA--TLSTLKACKHLALSTNNI-EKI----------SSLSGMENLRILSLGRN-LIKKIENL- 88 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH--HHHHTTTCSEEECSEEEE-SCC----------CCHHHHTTCCEEEEEEE-EECSCSSH-
T ss_pred chheeEeccccCcHhhhhH--HHhcCCCCCEEECCCCCC-ccc----------cccccCCCCCEEECCCC-Ccccccch-
Confidence 4555555442 22333322 245689999999988753 322 12667899999999984 56666643
Q ss_pred cccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccc--
Q 047829 300 AESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQ-- 377 (407)
Q Consensus 300 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~-- 377 (407)
...+++|+.|+++++ .+..+| .+..+++|++|+++++ .+..++.......+++|++|++.+|+ +...+...
T Consensus 89 ---~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~ 161 (198)
T 1ds9_A 89 ---DAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNA 161 (198)
T ss_dssp ---HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTT
T ss_pred ---hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccc
Confidence 223689999999987 466666 5788999999999984 56554322345678999999999984 43332000
Q ss_pred -cCCcccceeEecccceEec
Q 047829 378 -VGEEAEDCIVFRKLEYLGL 396 (407)
Q Consensus 378 -~g~~~~~~~~~~~L~~L~l 396 (407)
..-....+..+++|++|+-
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHHHHHHHHCSSCSEECC
T ss_pred hHHHHHHHHHhCCCcEEECC
Confidence 0000112567888998873
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-06 Score=79.06 Aligned_cols=57 Identities=19% Similarity=-0.030 Sum_probs=29.6
Q ss_pred cCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhh--ccccCCeeEEc
Q 047829 102 IGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLR--CLNNLGWLEVR 167 (407)
Q Consensus 102 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~l~~L~~L~l~ 167 (407)
..+++|+.|.++++.+++ ++....++|+.|.+..|....+ ....+. .+|+|+.|+++
T Consensus 169 ~~~P~L~~L~L~g~~~l~-------l~~~~~~~L~~L~L~~~~l~~~--~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-------IGKKPRPNLKSLEIISGGLPDS--VVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-------CCSCBCTTCSEEEEECSBCCHH--HHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCce-------eccccCCCCcEEEEecCCCChH--HHHHHHHccCCCCcEEEEe
Confidence 445677777777653222 1111256777777766543211 111122 56777777765
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.99 E-value=1e-05 Score=66.80 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=62.6
Q ss_pred cCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhcc
Q 047829 278 FPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESL 356 (407)
Q Consensus 278 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 356 (407)
.++++.|++++ +.++.++...+.. +++|+.|+++++. ++.+|+. +..+++|++|++++ +.+..+++ .....+
T Consensus 29 ~~~l~~L~L~~-N~i~~~~~~~~~~---l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~-~~~~~l 101 (170)
T 3g39_A 29 PTTTQVLYLYD-NQITKLEPGVFDR---LTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLND-NQLKSIPR-GAFDNL 101 (170)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTT---CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTC
T ss_pred CCCCcEEEcCC-CcCCccChhhhcC---cccCCEEECCCCC-cCccChhhccCCCCCCEEECCC-CccCEeCH-HHhcCC
Confidence 47899999998 5677776655544 8899999999864 6666654 46889999999988 56777643 445678
Q ss_pred ccCCEEEEecc
Q 047829 357 VNLERMKITDC 367 (407)
Q Consensus 357 ~~L~~L~i~~c 367 (407)
++|+.|++.++
T Consensus 102 ~~L~~L~L~~N 112 (170)
T 3g39_A 102 KSLTHIWLLNN 112 (170)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEeCCC
Confidence 89999998875
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-05 Score=66.56 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=64.0
Q ss_pred cCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccccCchhhhcc
Q 047829 278 FPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINLLTLSTSESL 356 (407)
Q Consensus 278 l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 356 (407)
.++|+.|++++ +.+..++...+.. +++|+.|+++++ +++.+|.. +..+++|++|++++ +.+..+++ .....+
T Consensus 32 ~~~L~~L~Ls~-N~l~~~~~~~~~~---l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~-~~~~~l 104 (174)
T 2r9u_A 32 PTDKQRLWLNN-NQITKLEPGVFDH---LVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSIPR-GAFDNL 104 (174)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTC
T ss_pred CCCCcEEEeCC-CCccccCHHHhcC---CcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-CccceeCH-HHhccc
Confidence 37899999998 4677776655544 889999999986 56777765 46789999999988 56777643 445678
Q ss_pred ccCCEEEEeccc
Q 047829 357 VNLERMKITDCK 368 (407)
Q Consensus 357 ~~L~~L~i~~c~ 368 (407)
++|+.|++.+++
T Consensus 105 ~~L~~L~L~~N~ 116 (174)
T 2r9u_A 105 KSLTHIYLYNNP 116 (174)
T ss_dssp TTCSEEECCSSC
T ss_pred cCCCEEEeCCCC
Confidence 899999998763
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.86 E-value=2.7e-05 Score=72.50 Aligned_cols=14 Identities=7% Similarity=-0.133 Sum_probs=10.2
Q ss_pred hhccccCCeeEEcc
Q 047829 155 LRCLNNLGWLEVRN 168 (407)
Q Consensus 155 ~~~l~~L~~L~l~~ 168 (407)
+.++++|+.|.|..
T Consensus 135 ~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 135 KEKFAHFEGLFWGD 148 (362)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhhcchhhheeecC
Confidence 45678888888754
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=97.79 E-value=7.4e-05 Score=61.52 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=39.4
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccC
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKC 341 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 341 (407)
+..+++|+.|++++ +.++.++...+.. +++|+.|+++++ .++.+++ .+..+++|++|+++++
T Consensus 50 ~~~l~~L~~L~Ls~-N~l~~l~~~~f~~---l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 50 FDRLTQLTRLDLDN-NQLTVLPAGVFDK---LTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTCTTCSEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hcCcccCCEEECCC-CCcCccChhhccC---CCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 34456666777766 3566666554443 677777777765 3555554 3567778888888763
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=97.77 E-value=9.1e-05 Score=61.25 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=42.9
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccC
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKC 341 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c 341 (407)
+..+++|+.|++++ +.++.++...+.. +++|+.|+++++ .++.+|+. +..+++|++|+++++
T Consensus 53 ~~~l~~L~~L~Ls~-N~l~~i~~~~~~~---l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 53 FDHLVNLQQLYFNS-NKLTAIPTGVFDK---LTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred hcCCcCCCEEECCC-CCCCccChhHhCC---cchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCC
Confidence 44567777777777 4666666654443 778888888875 45666654 667888888888874
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0024 Score=60.08 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=54.1
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
...+.+|+.+.+.+ .+..++...|.. +.+|+.+++.+ .++.+.. .+..+.+|+.+.+.. .++.+.. ...
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~~~aF~~---c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF 362 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIGEEAFES---CTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGA-NAF 362 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEECTTTTTT---CTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECT-TTB
T ss_pred cccccccccccccc--ccceechhhhcC---CCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehH-HHh
Confidence 33466788887764 466777666654 77888888853 3555543 345678888888864 3666533 345
Q ss_pred hccccCCEEEEec
Q 047829 354 ESLVNLERMKITD 366 (407)
Q Consensus 354 ~~l~~L~~L~i~~ 366 (407)
.++++|+.+.+..
T Consensus 363 ~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 363 QGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEEEEEG
T ss_pred hCCCCCCEEEECC
Confidence 5788888888754
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=68.06 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=63.8
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
+..+++|+.|+|++.+.++.++...+.. +++|+.|+++++ .++.+++ .+..+++|++|++++ +.+..+++ ...
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~---l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~-~~~ 100 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRG---LGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLSW-KTV 100 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCS---CCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCCS-TTT
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhcc---ccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC-CccceeCH-HHc
Confidence 5556789999998657788888766654 889999999987 4666554 567889999999988 67777643 333
Q ss_pred hccccCCEEEEecc
Q 047829 354 ESLVNLERMKITDC 367 (407)
Q Consensus 354 ~~l~~L~~L~i~~c 367 (407)
..++ |+.|++.++
T Consensus 101 ~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 101 QGLS-LQELVLSGN 113 (347)
T ss_dssp CSCC-CCEEECCSS
T ss_pred ccCC-ceEEEeeCC
Confidence 3344 888988765
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=1.7e-05 Score=74.20 Aligned_cols=168 Identities=13% Similarity=-0.016 Sum_probs=98.3
Q ss_pred CCcccEEeccccccccccccCC--Cccc-cCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccc
Q 047829 192 FPSLSWLRLIDLPKLKRFCNFT--GNII-ELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQI 268 (407)
Q Consensus 192 ~~~L~~L~l~~~~~l~~i~~~~--~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 268 (407)
+++|+.|+++++. +....... ..+. ..++|+.|++++|. ++......+...+++|++|++++|..-..-...
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~--- 145 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD--- 145 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH---
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH---
Confidence 4789999998875 32211000 0111 23689999998874 554433344555778999999888532211110
Q ss_pred ccccccc-cccCCcceEecccccccccccccccc-cccccCCcCceeeccCcccc----ccccccccccccCEEEeccCc
Q 047829 269 QHLFDEK-VTFPQLRFLELSRLHKVQHLWKENAE-SNKVFANLKSPEISECSKLQ----KLVPASWHLENLATLKVSKCH 342 (407)
Q Consensus 269 ~~~~~~~-~~l~~L~~L~L~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~c~~l~----~l~~~~~~~~~L~~L~l~~c~ 342 (407)
-.... ...++|+.|++++| .++......+. .+...++|+.|++++|.--. .+...+...++|++|++++|
T Consensus 146 --L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N- 221 (372)
T 3un9_A 146 --LRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN- 221 (372)
T ss_dssp --HHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-
T ss_pred --HHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-
Confidence 00001 13578999999986 34432222111 12347789999999876321 23344566778999999885
Q ss_pred CcccccCchhh---hccccCCEEEEeccc
Q 047829 343 GLINLLTLSTS---ESLVNLERMKITDCK 368 (407)
Q Consensus 343 ~l~~~~~~~~~---~~l~~L~~L~i~~c~ 368 (407)
.+.+.....+. ...++|++|++++|+
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 45543222222 345889999999884
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=4.8e-05 Score=71.21 Aligned_cols=168 Identities=16% Similarity=0.035 Sum_probs=97.6
Q ss_pred ecccceeeeCcccccccccccccc----cccCCccEEeecCCCcccc--ccccccCCCCcceeEEEeecccccccccCcc
Q 047829 17 FSELKFLILDYLPRLTSFCLENYT----LEFPSLERVSVTFCPDMKT--FSQGILSTPKLHKVQVIVKEEGELYHREGNL 90 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 90 (407)
.++|+.|+++++. +......... ...+.|++|++++| .+.. +..-...+++|++|++.++. -.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~---------l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS---------LG 139 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC---------CC
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC---------CC
Confidence 5789999999974 5433222111 12369999999999 4432 21112335689999996521 11
Q ss_pred hhhHHHHHHhh-cCCCCccEEEeccCCCcceeccCCCCCc--cccCCceEEEEecCCCCCcCC---ccchhhccccCCee
Q 047829 91 NSTIQKCYKEM-IGFRDIWYLQLSYFPRLKEIWHGQALPV--SFFNNLCKLVVDDCTNMSSAI---PVNLLRCLNNLGWL 164 (407)
Q Consensus 91 ~~~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~---~~~~~~~l~~L~~L 164 (407)
+.....+.+.+ ...++|++|++++|. +....... +.. ...++|+.|++++|... +.. ....+...++|+.|
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~-l~~~L~~~~~L~~L~Ls~N~l~-~~g~~~L~~~L~~~~~L~~L 216 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAV-LMEGLAGNTSVTHLSLLHTGLG-DEGLELLAAQLDRNRQLQEL 216 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHH-HHHHHHTCSSCCEEECTTSSCH-HHHHHHHHHHGGGCSCCCEE
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHH-HHHHHhcCCCcCEEeCCCCCCC-cHHHHHHHHHHhcCCCcCeE
Confidence 22344454444 356889999999986 43211110 100 23578999999998643 211 12335677899999
Q ss_pred EEccccccceeeccCCccccccccCCCCCcccEEeccccc
Q 047829 165 EVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLP 204 (407)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 204 (407)
++++|. +...+... +...+. ..++|++|+++++.
T Consensus 217 ~Ls~N~-i~~~g~~~----l~~~L~-~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 217 NVAYNG-AGDTAALA----LARAAR-EHPSLELLHLYFNE 250 (372)
T ss_dssp ECCSSC-CCHHHHHH----HHHHHH-HCSSCCEEECTTSS
T ss_pred ECCCCC-CCHHHHHH----HHHHHH-hCCCCCEEeccCCC
Confidence 999874 33221100 111111 23789999999874
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0041 Score=58.39 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=16.4
Q ss_pred cccCCCccEEeEecCCCCccccCcccccccCCCceeec
Q 047829 216 IIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEP 253 (407)
Q Consensus 216 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 253 (407)
+..+.+|+.+.+.. .++.+.... +..+..|+.+.+
T Consensus 181 F~~c~~L~~i~l~~--~~~~I~~~~-F~~~~~L~~i~~ 215 (394)
T 4fs7_A 181 FSGCGKLKSIKLPR--NLKIIRDYC-FAECILLENMEF 215 (394)
T ss_dssp TTTCTTCCBCCCCT--TCCEECTTT-TTTCTTCCBCCC
T ss_pred ccCCCCceEEEcCC--CceEeCchh-hccccccceeec
Confidence 44556666666642 233333222 223555555544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00047 Score=63.60 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=74.7
Q ss_pred EeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccccccc
Q 047829 225 LTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNK 304 (407)
Q Consensus 225 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~ 304 (407)
+++.+.++++.+|. ...+++|+.|++++...+..+.+. .+..+++|+.|+|++ +.+..++...+..
T Consensus 13 v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~--------~~~~l~~L~~L~l~~-N~l~~~~~~~~~~-- 78 (347)
T 2ifg_A 13 LRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELR--------DLRGLGELRNLTIVK-SGLRFVAPDAFHF-- 78 (347)
T ss_dssp EECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGG--------GSCSCCCCSEEECCS-SCCCEECTTGGGS--
T ss_pred EEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChh--------HhccccCCCEEECCC-CccceeCHHHhcC--
Confidence 44444336777765 445889999999875555544322 266799999999999 4788888776654
Q ss_pred ccCCcCceeeccCccccccccccccccccCEEEeccCcCcc
Q 047829 305 VFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLI 345 (407)
Q Consensus 305 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 345 (407)
+++|+.|+++++ ++..+|+.......|+.|++.++ .+.
T Consensus 79 -l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 79 -TPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGN-PLH 116 (347)
T ss_dssp -CSCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSS-CCC
T ss_pred -CcCCCEEeCCCC-ccceeCHHHcccCCceEEEeeCC-Ccc
Confidence 899999999985 56777765444344999999874 444
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.29 Score=45.60 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=56.2
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
...+++|+.+.+. ..+..++...|.. +.+|+.+.+.+ .++.+.. .+..+.+|+++.+.. .++.+.. ..+
T Consensus 284 F~~c~~L~~i~l~--~~i~~I~~~aF~~---c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~-~aF 353 (394)
T 4gt6_A 284 FMNCPALQDIEFS--SRITELPESVFAG---CISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPE-SAF 353 (394)
T ss_dssp TTTCTTCCEEECC--TTCCEECTTTTTT---CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCG-GGG
T ss_pred cccccccccccCC--CcccccCceeecC---CCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhH-hHh
Confidence 3456788888876 3566777776665 78888888853 3454443 356678899998853 4555533 345
Q ss_pred hccccCCEEEEecc
Q 047829 354 ESLVNLERMKITDC 367 (407)
Q Consensus 354 ~~l~~L~~L~i~~c 367 (407)
.++.+|+.+.+.+.
T Consensus 354 ~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 354 SNCTALNNIEYSGS 367 (394)
T ss_dssp TTCTTCCEEEESSC
T ss_pred hCCCCCCEEEECCc
Confidence 67888998888765
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.19 Score=46.54 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=38.6
Q ss_pred ccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhhhc
Q 047829 277 TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSES 355 (407)
Q Consensus 277 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 355 (407)
.+.+|+.+.+.. .+..++...+.. +++|+.+.+.+. .++.+++ .+..+.+|+.+.+.. .++.+.. ....+
T Consensus 261 ~~~~l~~i~l~~--~i~~i~~~aF~~---c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF~~ 331 (379)
T 4h09_A 261 NCTALKTLNFYA--KVKTVPYLLCSG---CSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQV-YAFKN 331 (379)
T ss_dssp TCTTCCEEEECC--CCSEECTTTTTT---CTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTTTT
T ss_pred eeehhccccccc--cceecccccccc---cccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHH-HHhhC
Confidence 345566665543 344555544443 566666666532 2333332 234556666666642 3444422 22334
Q ss_pred cccCCEEEE
Q 047829 356 LVNLERMKI 364 (407)
Q Consensus 356 l~~L~~L~i 364 (407)
+.+|+.+.+
T Consensus 332 C~~L~~i~i 340 (379)
T 4h09_A 332 CKALSTISY 340 (379)
T ss_dssp CTTCCCCCC
T ss_pred CCCCCEEEE
Confidence 555555544
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.18 Score=47.09 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=63.7
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
...+.+|+.+.+.+ .+..+....+.. +++|+.+.+.+ .++.++. .+..+.+|+++.+.. .++.+.. ..+
T Consensus 261 F~~c~~L~~i~lp~--~~~~I~~~aF~~---c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-~aF 330 (394)
T 4gt6_A 261 FDSCAYLASVKMPD--SVVSIGTGAFMN---CPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD-DAF 330 (394)
T ss_dssp TTTCSSCCEEECCT--TCCEECTTTTTT---CTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT-TTT
T ss_pred eeecccccEEeccc--ccceecCccccc---ccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH-hHh
Confidence 34466777777764 344566555544 77888888753 3555554 345678999999963 4666643 345
Q ss_pred hccccCCEEEEecccchhhhhccccCCcccceeEecccceEecC
Q 047829 354 ESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 397 (407)
Q Consensus 354 ~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~ 397 (407)
.++.+|+.+.+.+ .++.+. ......|.+|+.+++.
T Consensus 331 ~~C~~L~~i~ip~--sv~~I~-------~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 331 AGCEQLERIAIPS--SVTKIP-------ESAFSNCTALNNIEYS 365 (394)
T ss_dssp TTCTTCCEEEECT--TCCBCC-------GGGGTTCTTCCEEEES
T ss_pred hCCCCCCEEEECc--ccCEEh-------HhHhhCCCCCCEEEEC
Confidence 5788999988843 233332 1223456677777654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0025 Score=53.00 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=34.6
Q ss_pred ccCCccEEeecCCCccc-----cccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCC
Q 047829 42 EFPSLERVSVTFCPDMK-----TFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFP 116 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 116 (407)
..+.|++|++++|..+. .+...+...++|++|++.++ .--+.....+.+.+...++|++|+++++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n---------~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT---------RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS---------CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC---------CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 45677777777763332 23334455566777766431 11112233444444455667777776665
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.01 Score=49.22 Aligned_cols=90 Identities=11% Similarity=0.038 Sum_probs=58.1
Q ss_pred ecccceeeeCcccccccccccc---cccccCCccEEeecCCCccc-----cccccccCCCCcceeEEEeecccccccccC
Q 047829 17 FSELKFLILDYLPRLTSFCLEN---YTLEFPSLERVSVTFCPDMK-----TFSQGILSTPKLHKVQVIVKEEGELYHREG 88 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~---~~~~~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~ 88 (407)
.++|+.|+++++..+....... .....+.|++|++++|. +. .+...+...++|++|++.++ .
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N---------~ 104 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN---------F 104 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS---------C
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC---------c
Confidence 5789999999974565433221 12345899999999994 44 24444556688999999641 1
Q ss_pred cchhhHHHHHHhhcCCCCccEEEe--ccCC
Q 047829 89 NLNSTIQKCYKEMIGFRDIWYLQL--SYFP 116 (407)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~L~~L~l--~~~~ 116 (407)
.-+.....+.+.+...++|++|++ +++.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 122345556666666677777777 4444
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.11 E-value=1 Score=41.39 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=61.5
Q ss_pred cccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 216 IIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 216 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
+..+..|+.+.+.. .++.+.... +..+.+|+.+.+... +..+ .......+.+|+.+.+.. ..++.+
T Consensus 236 f~~~~~L~~i~lp~--~v~~I~~~a-F~~~~~l~~i~l~~~--i~~i--------~~~aF~~c~~L~~i~l~~-~~i~~I 301 (379)
T 4h09_A 236 FYGMKALDEIAIPK--NVTSIGSFL-LQNCTALKTLNFYAK--VKTV--------PYLLCSGCSNLTKVVMDN-SAIETL 301 (379)
T ss_dssp TTTCSSCCEEEECT--TCCEECTTT-TTTCTTCCEEEECCC--CSEE--------CTTTTTTCTTCCEEEECC-TTCCEE
T ss_pred ccCCccceEEEcCC--CccEeCccc-cceeehhcccccccc--ceec--------cccccccccccccccccc-ccccee
Confidence 34556677777643 344443332 334666777666332 1111 111244577899888875 456777
Q ss_pred cccccccccccCCcCceeeccCcccccccc-ccccccccCEEEec
Q 047829 296 WKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVS 339 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~ 339 (407)
+...|.. +.+|+.+.+.+ .++.+.. .+..+.+|+++.+.
T Consensus 302 ~~~aF~~---c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 302 EPRVFMD---CVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTTTTT---CTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred hhhhhcC---CCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 7777665 78899888853 3455543 34566777777774
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.015 Score=51.20 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=26.5
Q ss_pred cCCcCceeeccCcccc---ccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEeccc
Q 047829 306 FANLKSPEISECSKLQ---KLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCK 368 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~---~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 368 (407)
+++|+.|+++++. +. .++..+..+++|+.|++++ +.+.++........+ +|+.|.+.+++
T Consensus 169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCc
Confidence 4455555555432 22 2223334556666666655 344443111111112 56666666554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=93.65 E-value=0.054 Score=47.63 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=20.3
Q ss_pred cCCceEEEEecCCCCCcCCc-cchhhccccCCeeEEccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIP-VNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~ 169 (407)
+++|+.|++++|.... +.. ...+..+++|+.|++++|
T Consensus 169 l~~L~~L~Ls~N~l~~-l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTSCCCC-CGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCC-CccchhHHhhCCCCCEEECCCC
Confidence 5666666666655432 111 123456667777777664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 407 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.59 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.51 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.47 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.46 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.46 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.44 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.42 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.25 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.25 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.22 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.2 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.19 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.18 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.14 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.13 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.1 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.09 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.08 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.02 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.0 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.99 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.67 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.59 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.53 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.48 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.44 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.44 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.37 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.31 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.24 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.18 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.02 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.85 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.77 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 97.66 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 94.32 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 94.3 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 93.87 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 93.57 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 93.57 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 90.26 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=1.3e-15 Score=142.07 Aligned_cols=302 Identities=15% Similarity=0.139 Sum_probs=176.9
Q ss_pred eecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHH
Q 047829 16 AFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQ 95 (407)
Q Consensus 16 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 95 (407)
.+.+|++|++.++ +++.+.. ...+++|++|+++++ .++.+| .+.++++|++|++.++. +.
T Consensus 42 ~l~~l~~L~l~~~-~I~~l~g---l~~L~nL~~L~Ls~N-~l~~l~-~l~~L~~L~~L~L~~n~--------------i~ 101 (384)
T d2omza2 42 DLDQVTTLQADRL-GIKSIDG---VEYLNNLTQINFSNN-QLTDIT-PLKNLTKLVDILMNNNQ--------------IA 101 (384)
T ss_dssp HHTTCCEEECCSS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC--------------CC
T ss_pred HhCCCCEEECCCC-CCCCccc---cccCCCCCEEeCcCC-cCCCCc-cccCCcccccccccccc--------------cc
Confidence 4678999999985 5665521 347899999999999 788887 48899999999996521 11
Q ss_pred HHHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCC-----------------------C-----
Q 047829 96 KCYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNM-----------------------S----- 147 (407)
Q Consensus 96 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----------------------~----- 147 (407)
.++ .+..+++|++|+++++......+... ...+.......+... .
T Consensus 102 ~i~-~l~~l~~L~~L~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (384)
T d2omza2 102 DIT-PLANLTNLTGLTLFNNQITDIDPLKN------LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 174 (384)
T ss_dssp CCG-GGTTCTTCCEEECCSSCCCCCGGGTT------CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTC
T ss_pred ccc-cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccchhhhhccc
Confidence 111 35677889999988665221111111 111111111110000 0
Q ss_pred -----------cCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCcc
Q 047829 148 -----------SAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNI 216 (407)
Q Consensus 148 -----------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~ 216 (407)
..........+++++.+.++++. +..+.... ..++|++|++.++ .++.+. .+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~-i~~~~~~~-----------~~~~L~~L~l~~n-~l~~~~----~l 237 (384)
T d2omza2 175 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISDITPLG-----------ILTNLDELSLNGN-QLKDIG----TL 237 (384)
T ss_dssp TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGGGG-----------GCTTCCEEECCSS-CCCCCG----GG
T ss_pred cccccccccccccccccccccccccceeeccCCc-cCCCCccc-----------ccCCCCEEECCCC-CCCCcc----hh
Confidence 00011224455666666666542 22221110 2356777777665 233321 24
Q ss_pred ccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccc
Q 047829 217 IELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLW 296 (407)
Q Consensus 217 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~ 296 (407)
..+++|+.+++.++. +++.++ ...+++|++|+++++... . ..+...++.++.+.+..+ .+..+.
T Consensus 238 ~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~~~l~-~----------~~~~~~~~~l~~l~~~~n-~l~~~~ 301 (384)
T d2omza2 238 ASLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGANQIS-N----------ISPLAGLTALTNLELNEN-QLEDIS 301 (384)
T ss_dssp GGCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSCCC-C----------CGGGTTCTTCSEEECCSS-CCSCCG
T ss_pred hcccccchhccccCc-cCCCCc---ccccccCCEeeccCcccC-C----------CCcccccccccccccccc-cccccc
Confidence 456777777777653 444433 234677777777655421 1 112445666777777663 333332
Q ss_pred ccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhcc
Q 047829 297 KENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQS 376 (407)
Q Consensus 297 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~ 376 (407)
. ...+++++.++++++ +++.+++ +..+++|++|++++| .++++. ....+++|++|++++| .+.+++
T Consensus 302 ~-----~~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~---~l~~l~~L~~L~l~~N-~l~~l~-- 367 (384)
T d2omza2 302 P-----ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN-KVSDVS---SLANLTNINWLSAGHN-QISDLT-- 367 (384)
T ss_dssp G-----GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG---GGGGCTTCCEEECCSS-CCCBCG--
T ss_pred c-----cchhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC-CCCCCh---hHcCCCCCCEEECCCC-cCCCCh--
Confidence 2 223778889998876 4565543 678899999999886 666652 2557889999999888 555543
Q ss_pred ccCCcccceeEecccceEecCC
Q 047829 377 QVGEEAEDCIVFRKLEYLGLDC 398 (407)
Q Consensus 377 ~~g~~~~~~~~~~~L~~L~l~~ 398 (407)
++..+++|+.|++++
T Consensus 368 -------~l~~l~~L~~L~L~~ 382 (384)
T d2omza2 368 -------PLANLTRITQLGLND 382 (384)
T ss_dssp -------GGTTCTTCSEEECCC
T ss_pred -------hhccCCCCCEeeCCC
Confidence 355678888888765
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.59 E-value=9.2e-14 Score=129.19 Aligned_cols=301 Identities=13% Similarity=0.122 Sum_probs=184.8
Q ss_pred cceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcch-
Q 047829 13 NRIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLN- 91 (407)
Q Consensus 13 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~- 91 (407)
....|++|++|+++++ +++.++. ...+++|++|++++| .+..++ .+..+++|++|++.+..............
T Consensus 61 gl~~L~nL~~L~Ls~N-~l~~l~~---l~~L~~L~~L~L~~n-~i~~i~-~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~ 134 (384)
T d2omza2 61 GVEYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNN-QIADIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNL 134 (384)
T ss_dssp TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred ccccCCCCCEEeCcCC-cCCCCcc---ccCCccccccccccc-cccccc-cccccccccccccccccccccccccccccc
Confidence 3446899999999996 6887753 457899999999999 566666 47899999999986521110000000000
Q ss_pred -------hhHHHHHH-hhcCCCCccEEEeccCC--------Cccee-----ccCCCCCccccCCceEEEEecCCCCCcCC
Q 047829 92 -------STIQKCYK-EMIGFRDIWYLQLSYFP--------RLKEI-----WHGQALPVSFFNNLCKLVVDDCTNMSSAI 150 (407)
Q Consensus 92 -------~~~~~l~~-~~~~~~~L~~L~l~~~~--------~l~~~-----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 150 (407)
..+..+.. ................. ..... ..........+++++.+.+.++... .++
T Consensus 135 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~-~~~ 213 (384)
T d2omza2 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS-DIT 213 (384)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CCG
T ss_pred cccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccC-CCC
Confidence 00000000 00000000011000000 00000 0000001144688999999887543 333
Q ss_pred ccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecC
Q 047829 151 PVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENC 230 (407)
Q Consensus 151 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c 230 (407)
+ ....++|+.|++++|. ++.++.+. .+++|+.|++.++. +..+. .+..+++|+.++++++
T Consensus 214 ~---~~~~~~L~~L~l~~n~-l~~~~~l~-----------~l~~L~~L~l~~n~-l~~~~----~~~~~~~L~~L~l~~~ 273 (384)
T d2omza2 214 P---LGILTNLDELSLNGNQ-LKDIGTLA-----------SLTNLTDLDLANNQ-ISNLA----PLSGLTKLTELKLGAN 273 (384)
T ss_dssp G---GGGCTTCCEEECCSSC-CCCCGGGG-----------GCTTCSEEECCSSC-CCCCG----GGTTCTTCSEEECCSS
T ss_pred c---ccccCCCCEEECCCCC-CCCcchhh-----------cccccchhccccCc-cCCCC----cccccccCCEeeccCc
Confidence 3 4677899999999874 44433211 35889999998874 44332 2456889999999775
Q ss_pred CCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcC
Q 047829 231 PDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLK 310 (407)
Q Consensus 231 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~ 310 (407)
.+...++ ...++.++.+.+.++... . ......+++++.|+++++ ++..++. +..+++|+
T Consensus 274 -~l~~~~~---~~~~~~l~~l~~~~n~l~-~----------~~~~~~~~~l~~L~ls~n-~l~~l~~-----l~~l~~L~ 332 (384)
T d2omza2 274 -QISNISP---LAGLTALTNLELNENQLE-D----------ISPISNLKNLTYLTLYFN-NISDISP-----VSSLTKLQ 332 (384)
T ss_dssp -CCCCCGG---GTTCTTCSEEECCSSCCS-C----------CGGGGGCTTCSEEECCSS-CCSCCGG-----GGGCTTCC
T ss_pred -ccCCCCc---cccccccccccccccccc-c----------ccccchhcccCeEECCCC-CCCCCcc-----cccCCCCC
Confidence 4554433 234778888888766421 1 122556789999999985 5665542 23489999
Q ss_pred ceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 311 SPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 311 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
+|++++| .++.++ .+..+++|++|+++++ .+.++++ ..++++|+.|++++.
T Consensus 333 ~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~N 383 (384)
T d2omza2 333 RLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQ 383 (384)
T ss_dssp EEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCCE
T ss_pred EEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCCC
Confidence 9999998 567665 5788999999999874 6777643 567899999998865
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.51 E-value=2.9e-13 Score=121.97 Aligned_cols=256 Identities=13% Similarity=0.057 Sum_probs=134.9
Q ss_pred ccccccccccccccCCccEEeecCCCccccccc-cccCCCCcceeEEEeecccccccccCcchhhHHHH-HHhhcCCCCc
Q 047829 30 RLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQ-GILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKC-YKEMIGFRDI 107 (407)
Q Consensus 30 ~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L 107 (407)
+++.+|... .+.+++|+++++ .++++|. .+..+++|++|++.++. +..+ +..+..+++|
T Consensus 21 ~L~~lP~~l----~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~--------------~~~i~~~~f~~l~~L 81 (305)
T d1xkua_ 21 GLEKVPKDL----PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK--------------ISKISPGAFAPLVKL 81 (305)
T ss_dssp CCCSCCCSC----CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC--------------CCCBCTTTTTTCTTC
T ss_pred CCCccCCCC----CCCCCEEECcCC-cCCCcChhHhhcccccccccccccc--------------ccccchhhhhCCCcc
Confidence 466666542 367888888888 7888875 46678888888885411 1111 2234556667
Q ss_pred cEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccc
Q 047829 108 WYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEH 187 (407)
Q Consensus 108 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 187 (407)
++|+++++. ++..+ ...++.++.|.+.++... .+. ...+.....+..+....+.....
T Consensus 82 ~~L~l~~n~-l~~l~------~~~~~~l~~L~~~~n~l~-~l~-~~~~~~~~~~~~l~~~~n~~~~~------------- 139 (305)
T d1xkua_ 82 ERLYLSKNQ-LKELP------EKMPKTLQELRVHENEIT-KVR-KSVFNGLNQMIVVELGTNPLKSS------------- 139 (305)
T ss_dssp CEEECCSSC-CSBCC------SSCCTTCCEEECCSSCCC-BBC-HHHHTTCTTCCEEECCSSCCCGG-------------
T ss_pred CEecccCCc-cCcCc------cchhhhhhhhhccccchh-hhh-hhhhhcccccccccccccccccc-------------
Confidence 777776664 33322 123455666666554332 221 12233333444444433211100
Q ss_pred cCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccc
Q 047829 188 IGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQ 267 (407)
Q Consensus 188 ~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 267 (407)
......+..+++|+.+.+.++ .+..++.. .+++|++|+++++.......
T Consensus 140 ----------------------~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~----~~~~L~~L~l~~n~~~~~~~---- 188 (305)
T d1xkua_ 140 ----------------------GIENGAFQGMKKLSYIRIADT-NITTIPQG----LPPSLTELHLDGNKITKVDA---- 188 (305)
T ss_dssp ----------------------GBCTTGGGGCTTCCEEECCSS-CCCSCCSS----CCTTCSEEECTTSCCCEECT----
T ss_pred ----------------------CCCccccccccccCccccccC-CccccCcc----cCCccCEEECCCCcCCCCCh----
Confidence 000111223344444444443 22222221 14555666655544322111
Q ss_pred cccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccc
Q 047829 268 IQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINL 347 (407)
Q Consensus 268 ~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~ 347 (407)
.....+++++.|+++++ .+..++...+.. +++|++|+++++ +++.+|.++..+++|++|++++ +.++.+
T Consensus 189 -----~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~---l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~-N~i~~i 257 (305)
T d1xkua_ 189 -----ASLKGLNNLAKLGLSFN-SISAVDNGSLAN---TPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAI 257 (305)
T ss_dssp -----GGGTTCTTCCEEECCSS-CCCEECTTTGGG---STTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCC
T ss_pred -----hHhhccccccccccccc-cccccccccccc---cccceeeecccc-cccccccccccccCCCEEECCC-CccCcc
Confidence 11344566777777663 555555554443 677888888776 4667777777778888888877 356655
Q ss_pred cC-----chhhhccccCCEEEEeccc
Q 047829 348 LT-----LSTSESLVNLERMKITDCK 368 (407)
Q Consensus 348 ~~-----~~~~~~l~~L~~L~i~~c~ 368 (407)
.. .+.....++|+.+++.+++
T Consensus 258 ~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 258 GSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ChhhccCcchhcccCCCCEEECCCCc
Confidence 22 1223345677788887774
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.47 E-value=1.1e-13 Score=125.20 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=73.1
Q ss_pred CCccEEeecCCCccc---cccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCcce
Q 047829 44 PSLERVSVTFCPDMK---TFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKE 120 (407)
Q Consensus 44 ~~L~~L~l~~c~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 120 (407)
.+++.|+++++ .+. .+|..++++++|++|++.+++ ...+.+|..+..+++|++|+++++. +..
T Consensus 50 ~~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N------------~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~ 115 (313)
T d1ogqa_ 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGIN------------NLVGPIPPAIAKLTQLHYLYITHTN-VSG 115 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEET------------TEESCCCGGGGGCTTCSEEEEEEEC-CEE
T ss_pred EEEEEEECCCC-CCCCCCCCChHHhcCcccccccccccc------------ccccccccccccccccchhhhcccc-ccc
Confidence 46889999988 443 588899999999999996521 1112356667777888888888876 332
Q ss_pred eccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 121 IWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 121 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
..... + ..+.+|+.+.+..|.....++.. +..+++++.++++++.
T Consensus 116 ~~~~~-~--~~~~~L~~l~l~~N~~~~~~p~~--l~~l~~L~~l~l~~n~ 160 (313)
T d1ogqa_ 116 AIPDF-L--SQIKTLVTLDFSYNALSGTLPPS--ISSLPNLVGITFDGNR 160 (313)
T ss_dssp ECCGG-G--GGCTTCCEEECCSSEEESCCCGG--GGGCTTCCEEECCSSC
T ss_pred ccccc-c--cchhhhcccccccccccccCchh--hccCcccceeeccccc
Confidence 22111 1 34677888888877665544433 6778888888887764
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.46 E-value=7.5e-13 Score=119.17 Aligned_cols=200 Identities=12% Similarity=0.055 Sum_probs=121.8
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
.+++++|+++++ +++.++... ...+++|++|+++++......|..+..+++|++|++.+. .+..
T Consensus 30 ~~~l~~L~Ls~N-~i~~l~~~~-f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n--------------~l~~ 93 (305)
T d1xkua_ 30 PPDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN--------------QLKE 93 (305)
T ss_dssp CTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS--------------CCSB
T ss_pred CCCCCEEECcCC-cCCCcChhH-hhccccccccccccccccccchhhhhCCCccCEecccCC--------------ccCc
Confidence 378999999996 688887653 457899999999999544434666888999999999652 1222
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceee
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVF 176 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 176 (407)
+|.. ....++.|.+..+. +....... + .....++.+....+...........+..+++|+.+++++|. +..++
T Consensus 94 l~~~--~~~~l~~L~~~~n~-l~~l~~~~-~--~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~ 166 (305)
T d1xkua_ 94 LPEK--MPKTLQELRVHENE-ITKVRKSV-F--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP 166 (305)
T ss_dssp CCSS--CCTTCCEEECCSSC-CCBBCHHH-H--TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC
T ss_pred Cccc--hhhhhhhhhccccc-hhhhhhhh-h--hccccccccccccccccccCCCccccccccccCccccccCC-ccccC
Confidence 2222 23568888887765 22211111 1 12455666776665443322233457788889999998764 22221
Q ss_pred ccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccc
Q 047829 177 HLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKL 256 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 256 (407)
...+++|+.|++.++...... ...+..++.++.|+++++ .+..+++.. ...+++|++|+++++
T Consensus 167 ------------~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~l~~L~~s~n-~l~~~~~~~-~~~l~~L~~L~L~~N 229 (305)
T d1xkua_ 167 ------------QGLPPSLTELHLDGNKITKVD---AASLKGLNNLAKLGLSFN-SISAVDNGS-LANTPHLRELHLNNN 229 (305)
T ss_dssp ------------SSCCTTCSEEECTTSCCCEEC---TGGGTTCTTCCEEECCSS-CCCEECTTT-GGGSTTCCEEECCSS
T ss_pred ------------cccCCccCEEECCCCcCCCCC---hhHhhccccccccccccc-ccccccccc-ccccccceeeecccc
Confidence 113578888888876433322 112445667777777664 455554433 233556666666555
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2e-14 Score=128.25 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=20.6
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSL 172 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 172 (407)
+++|+.|++++|..+++......+..+++|++|++++|..+
T Consensus 94 ~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~ 134 (284)
T d2astb2 94 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134 (284)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred CCCCcCccccccccccccccchhhHHHHhcccccccccccc
Confidence 45566666655555443211122345566666666665443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=8.5e-15 Score=130.77 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=117.4
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCN 211 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 211 (407)
..+|++|++++|..... .....+..+++|++|++++|. +.... ...+. .+++|++|++++|..+++...
T Consensus 45 ~~~L~~LdLs~~~i~~~-~l~~l~~~c~~L~~L~L~~~~-l~~~~--------~~~l~-~~~~L~~L~Ls~c~~itd~~l 113 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVS-TLHGILSQCSKLQNLSLEGLR-LSDPI--------VNTLA-KNSNLVRLNLSGCSGFSEFAL 113 (284)
T ss_dssp CBCCCEEECTTCEECHH-HHHHHHTTBCCCSEEECTTCB-CCHHH--------HHHHT-TCTTCSEEECTTCBSCCHHHH
T ss_pred CCCCCEEECCCCccCHH-HHHHHHHhCCCcccccccccC-CCcHH--------HHHHh-cCCCCcCcccccccccccccc
Confidence 34666666666543221 112235566677777776663 21110 00111 136677777777665543110
Q ss_pred CCCccccCCCccEEeEecCCCCccccCc-ccccccCCCceeeccccc-ccchhhhcccccccccc-ccccCCcceEeccc
Q 047829 212 FTGNIIELPMFWSLTIENCPDMETFISN-STSILHMTADNKEPQKLK-SEENLLVADQIQHLFDE-KVTFPQLRFLELSR 288 (407)
Q Consensus 212 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~~~~~~~-~~~l~~L~~L~L~~ 288 (407)
.....++++|++|++++|..++..... .+...+++|++|.+++|. .+.+. .... ...+|+|++|++++
T Consensus 114 -~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~--------~l~~l~~~~~~L~~L~L~~ 184 (284)
T d2astb2 114 -QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS--------DLSTLVRRCPNLVHLDLSD 184 (284)
T ss_dssp -HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH--------HHHHHHHHCTTCSEEECTT
T ss_pred -chhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccc--------ccccccccccccccccccc
Confidence 001234677888888777766543221 223335678888887764 23321 0111 23477888888888
Q ss_pred ccccccccccccccccccCCcCceeeccCccccc-cccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 289 LHKVQHLWKENAESNKVFANLKSPEISECSKLQK-LVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 289 ~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
|..++.-....+. .+++|++|++++|+.+.. ....+..+|+|++|++++| +.+.....+...+|+|+ + +|
T Consensus 185 ~~~itd~~~~~l~---~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~---i-~~ 255 (284)
T d2astb2 185 SVMLKNDCFQEFF---QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---I-NC 255 (284)
T ss_dssp CTTCCGGGGGGGG---GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---E-SC
T ss_pred ccCCCchhhhhhc---ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC--CCHHHHHHHHHhCcccc---c-cC
Confidence 7766643333333 378888888888887653 2234567889999999887 33322233445566665 2 55
Q ss_pred cchhhh
Q 047829 368 KMMEEI 373 (407)
Q Consensus 368 ~~l~~~ 373 (407)
..+..+
T Consensus 256 ~~ls~~ 261 (284)
T d2astb2 256 SHFTTI 261 (284)
T ss_dssp CCSCCT
T ss_pred ccCCCC
Confidence 555544
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.42 E-value=7.9e-13 Score=119.51 Aligned_cols=132 Identities=13% Similarity=0.077 Sum_probs=89.5
Q ss_pred ccceeeeCcccccccc-cccccccccCCccEEeecCCCccc-cccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 19 ELKFLILDYLPRLTSF-CLENYTLEFPSLERVSVTFCPDMK-TFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 19 ~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
+++.|+|+++ ++... +.....+.+++|++|++++|..+. .+|..++++++|++|+++++.-.. .
T Consensus 51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~-------~------ 116 (313)
T d1ogqa_ 51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-------A------ 116 (313)
T ss_dssp CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-------E------
T ss_pred EEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc-------c------
Confidence 6888999985 33321 222236689999999999865665 799999999999999997622110 0
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccC-CeeEEcccc
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNL-GWLEVRNCD 170 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L-~~L~l~~~~ 170 (407)
.+..+....+|++++++.+......+... ..+++++.+.+.++.....++.. +..+..+ +.+.++++.
T Consensus 117 ~~~~~~~~~~L~~l~l~~N~~~~~~p~~l----~~l~~L~~l~l~~n~l~~~ip~~--~~~l~~l~~~l~~~~n~ 185 (313)
T d1ogqa_ 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSI----SSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNR 185 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGG----GGCTTCCEEECCSSCCEEECCGG--GGCCCTTCCEEECCSSE
T ss_pred ccccccchhhhcccccccccccccCchhh----ccCcccceeeccccccccccccc--ccccccccccccccccc
Confidence 12234566889999999876433333222 45889999999998766554433 5566665 667776653
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1e-10 Score=102.82 Aligned_cols=175 Identities=14% Similarity=0.040 Sum_probs=115.6
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF 212 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 212 (407)
++++.|++++|... .+ +.+.+.++++|++|++++| .++.++... .+++|+.|+++++ .+..++.
T Consensus 31 ~~l~~L~Ls~N~i~-~l-~~~~f~~l~~L~~L~L~~N-~l~~l~~~~-----------~l~~L~~L~Ls~N-~l~~~~~- 94 (266)
T d1p9ag_ 31 KDTTILHLSENLLY-TF-SLATLMPYTRLTQLNLDRA-ELTKLQVDG-----------TLPVLGTLDLSHN-QLQSLPL- 94 (266)
T ss_dssp TTCCEEECTTSCCS-EE-EGGGGTTCTTCCEEECTTS-CCCEEECCS-----------CCTTCCEEECCSS-CCSSCCC-
T ss_pred cCCCEEECcCCcCC-Cc-CHHHhhccccccccccccc-ccccccccc-----------ccccccccccccc-ccccccc-
Confidence 57888888887543 33 3345778888999998886 455544211 3578888888876 3443322
Q ss_pred CCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccc
Q 047829 213 TGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKV 292 (407)
Q Consensus 213 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 292 (407)
.+..+++|+.|++.++. +..+.... ...+.+++.|.+.++.. ..+.+. ....+++++.+++++ ..+
T Consensus 95 --~~~~l~~L~~L~l~~~~-~~~~~~~~-~~~l~~l~~L~l~~n~l-~~l~~~--------~~~~l~~l~~l~l~~-N~l 160 (266)
T d1p9ag_ 95 --LGQTLPALTVLDVSFNR-LTSLPLGA-LRGLGELQELYLKGNEL-KTLPPG--------LLTPTPKLEKLSLAN-NNL 160 (266)
T ss_dssp --CTTTCTTCCEEECCSSC-CCCCCSST-TTTCTTCCEEECTTSCC-CCCCTT--------TTTTCTTCCEEECTT-SCC
T ss_pred --ccccccccccccccccc-cceeeccc-ccccccccccccccccc-ceeccc--------cccccccchhccccc-ccc
Confidence 24467888888887754 34443332 34577888888876642 222111 134567888888888 466
Q ss_pred ccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 293 QHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 293 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
+.++.+.+.. +++|++|+++++. ++.+|+++..+++|+.|++++.
T Consensus 161 ~~~~~~~~~~---l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 161 TELPAGLLNG---LENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205 (266)
T ss_dssp SCCCTTTTTT---CTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred cccCcccccc---ccccceeecccCC-CcccChhHCCCCCCCEEEecCC
Confidence 6777665554 7888888888764 7788887778888888888863
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=8.2e-11 Score=104.43 Aligned_cols=203 Identities=16% Similarity=0.080 Sum_probs=112.4
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF 212 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 212 (407)
.++++|++++|.. +.++ ...+.++++|++|+++++ .+..+.... ....+.++.+.+.....+..+..
T Consensus 32 ~~~~~L~Ls~N~i-~~i~-~~~f~~l~~L~~L~ls~n-~l~~i~~~~---------~~~~~~~~~l~~~~~~~~~~l~~- 98 (284)
T d1ozna_ 32 AASQRIFLHGNRI-SHVP-AASFRACRNLTILWLHSN-VLARIDAAA---------FTGLALLEQLDLSDNAQLRSVDP- 98 (284)
T ss_dssp TTCSEEECTTSCC-CEEC-TTTTTTCTTCCEEECCSS-CCCEECTTT---------TTTCTTCCEEECCSCTTCCCCCT-
T ss_pred CCCCEEECcCCcC-CCCC-HHHhhccccccccccccc-ccccccccc---------ccccccccccccccccccccccc-
Confidence 4566666666543 3333 234566667777777654 333332111 01124555555554444444321
Q ss_pred CCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccc
Q 047829 213 TGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKV 292 (407)
Q Consensus 213 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 292 (407)
..+..+++|+.|++.++. +..+.... ...+++|+.+++.++.. +.+.+ ..+..+++|+.|+++++ .+
T Consensus 99 -~~~~~l~~L~~L~l~~n~-~~~~~~~~-~~~~~~L~~l~l~~N~l-~~i~~--------~~f~~~~~L~~L~l~~N-~l 165 (284)
T d1ozna_ 99 -ATFHGLGRLHTLHLDRCG-LQELGPGL-FRGLAALQYLYLQDNAL-QALPD--------DTFRDLGNLTHLFLHGN-RI 165 (284)
T ss_dssp -TTTTTCTTCCEEECTTSC-CCCCCTTT-TTTCTTCCEEECCSSCC-CCCCT--------TTTTTCTTCCEEECCSS-CC
T ss_pred -hhhcccccCCEEecCCcc-cccccccc-cchhcccchhhhccccc-cccCh--------hHhccccchhhcccccC-cc
Confidence 124456667777776643 33332222 23356677777755432 22111 11344667777777773 56
Q ss_pred ccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEec
Q 047829 293 QHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITD 366 (407)
Q Consensus 293 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~ 366 (407)
..++...+.. +++|+.+++.++......|..+..+++|++|++++ +.+..+++ .....+++|+.|++++
T Consensus 166 ~~l~~~~f~~---l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~-N~i~~~~~-~~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 166 SSVPERAFRG---LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA-NNLSALPT-EALAPLRALQYLRLND 234 (284)
T ss_dssp CEECTTTTTT---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCH-HHHTTCTTCCEEECCS
T ss_pred cccchhhhcc---ccccchhhhhhccccccChhHhhhhhhcccccccc-cccccccc-cccccccccCEEEecC
Confidence 6666665554 77788888877654444456677778888888877 45555533 3455677888887765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.22 E-value=1.1e-09 Score=99.48 Aligned_cols=95 Identities=19% Similarity=0.102 Sum_probs=58.2
Q ss_pred ccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHH
Q 047829 19 ELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCY 98 (407)
Q Consensus 19 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 98 (407)
+++.|+++++ +++.+|.. .++|++|+++++ .++++|.. +.+|+.|++.+.. +.....+
T Consensus 39 ~l~~LdLs~~-~L~~lp~~-----~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~l~~n~----l~~l~~l-------- 96 (353)
T d1jl5a_ 39 QAHELELNNL-GLSSLPEL-----PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNN----LKALSDL-------- 96 (353)
T ss_dssp TCSEEECTTS-CCSCCCSC-----CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSC----CSCCCSC--------
T ss_pred CCCEEEeCCC-CCCCCCCC-----CCCCCEEECCCC-CCcccccc---hhhhhhhhhhhcc----cchhhhh--------
Confidence 5788888885 57777632 478888988877 78888844 4577777775410 0111111
Q ss_pred HhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCC
Q 047829 99 KEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNM 146 (407)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 146 (407)
.+.|++|+++++. +...+. . ..+++|+.|.+.++...
T Consensus 97 -----p~~L~~L~L~~n~-l~~lp~-~----~~l~~L~~L~l~~~~~~ 133 (353)
T d1jl5a_ 97 -----PPLLEYLGVSNNQ-LEKLPE-L----QNSSFLKIIDVDNNSLK 133 (353)
T ss_dssp -----CTTCCEEECCSSC-CSSCCC-C----TTCTTCCEEECCSSCCS
T ss_pred -----ccccccccccccc-cccccc-h----hhhccceeecccccccc
Confidence 1457888887765 443321 1 33677888877766543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.20 E-value=2.7e-10 Score=97.48 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=44.4
Q ss_pred ccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhcc
Q 047829 277 TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESL 356 (407)
Q Consensus 277 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 356 (407)
..++|+.|.++++ .+...+. +..+++|+.|+++++ +++.+++ +..+++|++|++++| .++++++ ...+
T Consensus 149 ~~~~L~~L~l~~n-~~~~~~~-----l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~---l~~l 216 (227)
T d1h6ua2 149 GLTNLQYLSIGNA-QVSDLTP-----LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP---LANT 216 (227)
T ss_dssp GCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG---GTTC
T ss_pred ccccccccccccc-ccccchh-----hcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcc---cccC
Confidence 3456666666553 2222211 122667777777765 4555543 566777777777775 4666532 4466
Q ss_pred ccCCEEEEe
Q 047829 357 VNLERMKIT 365 (407)
Q Consensus 357 ~~L~~L~i~ 365 (407)
++|+.|+++
T Consensus 217 ~~L~~L~ls 225 (227)
T d1h6ua2 217 SNLFIVTLT 225 (227)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEEee
Confidence 777777765
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.1e-10 Score=103.66 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=144.6
Q ss_pred ccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccC
Q 047829 159 NNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFIS 238 (407)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 238 (407)
+.+++|++++| .++.++... +. .+++|+.|++++. .+..+... .+...+.++.+.+.....++.+++
T Consensus 32 ~~~~~L~Ls~N-~i~~i~~~~--------f~-~l~~L~~L~ls~n-~l~~i~~~--~~~~~~~~~~l~~~~~~~~~~l~~ 98 (284)
T d1ozna_ 32 AASQRIFLHGN-RISHVPAAS--------FR-ACRNLTILWLHSN-VLARIDAA--AFTGLALLEQLDLSDNAQLRSVDP 98 (284)
T ss_dssp TTCSEEECTTS-CCCEECTTT--------TT-TCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCCCEEECcCC-cCCCCCHHH--------hh-ccccccccccccc-cccccccc--cccccccccccccccccccccccc
Confidence 56899999986 566654311 11 3588999999865 34443222 244567888888888788888766
Q ss_pred cccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCc
Q 047829 239 NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECS 318 (407)
Q Consensus 239 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 318 (407)
.. ...+++|+.|+++++....-. .......++|+.+++++ ..++.++...+.. +++|+.|+++++.
T Consensus 99 ~~-~~~l~~L~~L~l~~n~~~~~~---------~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~---~~~L~~L~l~~N~ 164 (284)
T d1ozna_ 99 AT-FHGLGRLHTLHLDRCGLQELG---------PGLFRGLAALQYLYLQD-NALQALPDDTFRD---LGNLTHLFLHGNR 164 (284)
T ss_dssp TT-TTTCTTCCEEECTTSCCCCCC---------TTTTTTCTTCCEEECCS-SCCCCCCTTTTTT---CTTCCEEECCSSC
T ss_pred hh-hcccccCCEEecCCccccccc---------ccccchhcccchhhhcc-ccccccChhHhcc---ccchhhcccccCc
Confidence 55 445899999999887642211 11245578999999998 5778888766654 7899999999874
Q ss_pred ccccccc-ccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecC
Q 047829 319 KLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 397 (407)
Q Consensus 319 ~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~ 397 (407)
++.+++ .+..+++|++++++++ .+..+.+ ..+..+++|++|+++++ .+..++ +..+..+++|++|+++
T Consensus 165 -l~~l~~~~f~~l~~L~~l~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N-~i~~~~-------~~~~~~~~~L~~L~l~ 233 (284)
T d1ozna_ 165 -ISSVPERAFRGLHSLDRLLLHQN-RVAHVHP-HAFRDLGRLMTLYLFAN-NLSALP-------TEALAPLRALQYLRLN 233 (284)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCC-------HHHHTTCTTCCEEECC
T ss_pred -ccccchhhhccccccchhhhhhc-cccccCh-hHhhhhhhccccccccc-cccccc-------ccccccccccCEEEec
Confidence 666654 5577899999999984 5666644 44677899999999988 344443 2345567899999998
Q ss_pred CCC
Q 047829 398 CLP 400 (407)
Q Consensus 398 ~cp 400 (407)
+.|
T Consensus 234 ~N~ 236 (284)
T d1ozna_ 234 DNP 236 (284)
T ss_dssp SSC
T ss_pred CCC
Confidence 743
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.18 E-value=3e-10 Score=97.15 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=47.0
Q ss_pred cCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccce
Q 047829 306 FANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDC 385 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~ 385 (407)
+++|+.|++.++.. ...+ .+..+++|++|+++++ .+++++ ....+++|++|++++| .++++. .+
T Consensus 150 ~~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~Ls~n-~l~~l~---~l~~l~~L~~L~Ls~N-~lt~i~---------~l 213 (227)
T d1h6ua2 150 LTNLQYLSIGNAQV-SDLT-PLANLSKLTTLKADDN-KISDIS---PLASLPNLIEVHLKNN-QISDVS---------PL 213 (227)
T ss_dssp CTTCCEEECCSSCC-CCCG-GGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCCEEECTTS-CCCBCG---------GG
T ss_pred cccccccccccccc-ccch-hhcccccceecccCCC-ccCCCh---hhcCCCCCCEEECcCC-cCCCCc---------cc
Confidence 56677777776542 2222 2566777777777764 565552 2446677777777777 455553 35
Q ss_pred eEecccceEecC
Q 047829 386 IVFRKLEYLGLD 397 (407)
Q Consensus 386 ~~~~~L~~L~l~ 397 (407)
..+++|+.|+++
T Consensus 214 ~~l~~L~~L~ls 225 (227)
T d1h6ua2 214 ANTSNLFIVTLT 225 (227)
T ss_dssp TTCTTCCEEEEE
T ss_pred ccCCCCCEEEee
Confidence 566777777765
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.14 E-value=1.3e-09 Score=99.10 Aligned_cols=117 Identities=18% Similarity=0.092 Sum_probs=77.2
Q ss_pred ecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHH
Q 047829 17 FSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQK 96 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 96 (407)
.++|++|++++ .+++.+|.. +.+|+.|+++++ .++.++. -.+.|++|++.+ +.+..
T Consensus 57 ~~~L~~L~Ls~-N~l~~lp~~-----~~~L~~L~l~~n-~l~~l~~---lp~~L~~L~L~~--------------n~l~~ 112 (353)
T d1jl5a_ 57 PPHLESLVASC-NSLTELPEL-----PQSLKSLLVDNN-NLKALSD---LPPLLEYLGVSN--------------NQLEK 112 (353)
T ss_dssp CTTCSEEECCS-SCCSSCCCC-----CTTCCEEECCSS-CCSCCCS---CCTTCCEEECCS--------------SCCSS
T ss_pred CCCCCEEECCC-CCCcccccc-----hhhhhhhhhhhc-ccchhhh---hccccccccccc--------------ccccc
Confidence 47899999987 578877643 479999999998 6666652 124699999964 12222
Q ss_pred HHHhhcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 97 CYKEMIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 97 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
+| ....+++|++|+++++.... . + .....+..+.+..+..... ..+..++.++.+.+.++.
T Consensus 113 lp-~~~~l~~L~~L~l~~~~~~~-~------~-~~~~~l~~l~~~~~~~~~~----~~l~~l~~l~~L~l~~n~ 173 (353)
T d1jl5a_ 113 LP-ELQNSSFLKIIDVDNNSLKK-L------P-DLPPSLEFIAAGNNQLEEL----PELQNLPFLTAIYADNNS 173 (353)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-C------C-CCCTTCCEEECCSSCCSSC----CCCTTCTTCCEEECCSSC
T ss_pred cc-chhhhccceeeccccccccc-c------c-cccccccchhhcccccccc----ccccccccceeccccccc
Confidence 33 24567899999998876222 1 1 2245677777766544321 225677788888887754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.9e-10 Score=99.79 Aligned_cols=195 Identities=14% Similarity=0.068 Sum_probs=133.4
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccC
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNF 212 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 212 (407)
.++.+++-.+ ..++.+|.. ++ +++++|++++| .++.++... +. .+++|++|+++++ +++.++.
T Consensus 10 ~~~~~v~C~~-~~L~~iP~~--lp--~~l~~L~Ls~N-~i~~l~~~~--------f~-~l~~L~~L~L~~N-~l~~l~~- 72 (266)
T d1p9ag_ 10 ASHLEVNCDK-RNLTALPPD--LP--KDTTILHLSEN-LLYTFSLAT--------LM-PYTRLTQLNLDRA-ELTKLQV- 72 (266)
T ss_dssp TTCCEEECTT-SCCSSCCSC--CC--TTCCEEECTTS-CCSEEEGGG--------GT-TCTTCCEEECTTS-CCCEEEC-
T ss_pred CCCeEEEccC-CCCCeeCcC--cC--cCCCEEECcCC-cCCCcCHHH--------hh-ccccccccccccc-ccccccc-
Confidence 4444544333 335555432 22 57999999986 455554211 11 3589999999987 5666543
Q ss_pred CCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccc
Q 047829 213 TGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKV 292 (407)
Q Consensus 213 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 292 (407)
+..+++|+.|+++++ +++..+. .+..+++|+.|+++++....-. ......+.+++.|.+++ ..+
T Consensus 73 ---~~~l~~L~~L~Ls~N-~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~---------~~~~~~l~~l~~L~l~~-n~l 136 (266)
T d1p9ag_ 73 ---DGTLPVLGTLDLSHN-QLQSLPL--LGQTLPALTVLDVSFNRLTSLP---------LGALRGLGELQELYLKG-NEL 136 (266)
T ss_dssp ---CSCCTTCCEEECCSS-CCSSCCC--CTTTCTTCCEEECCSSCCCCCC---------SSTTTTCTTCCEEECTT-SCC
T ss_pred ---ccccccccccccccc-ccccccc--ccccccccccccccccccceee---------ccccccccccccccccc-ccc
Confidence 336899999999885 5665533 3456899999999887643211 11245678999999998 467
Q ss_pred ccccccccccccccCCcCceeeccCcccccccc-ccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecc
Q 047829 293 QHLWKENAESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDC 367 (407)
Q Consensus 293 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c 367 (407)
+.++...+.. +++|+.++++++. ++.++. .+..+++|++|++++ +.++.++ .+ +..+++|+.|++.++
T Consensus 137 ~~l~~~~~~~---l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~L~~lp-~~-~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 137 KTLPPGLLTP---TPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQE-NSLYTIP-KG-FFGSHLLPFAFLHGN 205 (266)
T ss_dssp CCCCTTTTTT---CTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCS-SCCCCCC-TT-TTTTCCCSEEECCSC
T ss_pred ceeccccccc---cccchhccccccc-ccccCccccccccccceeeccc-CCCcccC-hh-HCCCCCCCEEEecCC
Confidence 7777766554 8899999999874 565654 467799999999998 5688774 33 346889999999864
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=5.2e-10 Score=96.52 Aligned_cols=185 Identities=15% Similarity=0.082 Sum_probs=87.5
Q ss_pred cCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecccccccccccc
Q 047829 132 FNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCN 211 (407)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 211 (407)
.+++++|+++++.. +.++. +.+.++++|++|++++|.....++... .. .+++++++.+..+..+..+.
T Consensus 28 ~~~l~~L~Ls~n~i-~~l~~-~~f~~l~~L~~L~ls~n~~~~~i~~~~-f~--------~l~~l~~l~~~~~n~l~~~~- 95 (242)
T d1xwdc1 28 PRNAIELRFVLTKL-RVIQK-GAFSGFGDLEKIEISQNDVLEVIEADV-FS--------NLPKLHEIRIEKANNLLYIN- 95 (242)
T ss_dssp CSCCSEEEEESCCC-CEECT-TTTTTCTTCCEEEEESCTTCCEECSSS-EE--------SCTTCCEEEEECCTTCCEEC-
T ss_pred CCCCCEEECcCCcC-CccCh-hHhhccchhhhhhhccccccceeeccc-cc--------cccccccccccccccccccc-
Confidence 35677777777643 33332 345677777777777765433322100 00 13566666665555544332
Q ss_pred CCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc--ccccchhhhccccccccccccc-cCCcceEeccc
Q 047829 212 FTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK--LKSEENLLVADQIQHLFDEKVT-FPQLRFLELSR 288 (407)
Q Consensus 212 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~--~~~l~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~ 288 (407)
...+..+++|+.+.+.++ .++..++... +.+++.+.... +..+..+.. ..... ...++.+++.+
T Consensus 96 -~~~~~~l~~L~~l~l~~~-~l~~~~~~~~---~~~l~~l~~~~~~n~~l~~i~~--------~~~~~~~~~l~~L~l~~ 162 (242)
T d1xwdc1 96 -PEAFQNLPNLQYLLISNT-GIKHLPDVHK---IHSLQKVLLDIQDNINIHTIER--------NSFVGLSFESVILWLNK 162 (242)
T ss_dssp -TTSEECCTTCCEEEEESC-CCCSCCCCTT---TCBSSCEEEEEESCTTCCEECT--------TSSTTSBSSCEEEECCS
T ss_pred -cccccccccccccccchh-hhcccccccc---cccccccccccccccccccccc--------cccccccccceeeeccc
Confidence 122456677777777664 3444333221 33333332211 111111100 00111 12455555554
Q ss_pred ccccccccccccccccccCCcCceeeccCccccccccc-cccccccCEEEeccCcCcccc
Q 047829 289 LHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPA-SWHLENLATLKVSKCHGLINL 347 (407)
Q Consensus 289 ~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~~ 347 (407)
+.++.++...+. .+++..+....+..++.+|.. +..+++|++|++++ +.++.+
T Consensus 163 -n~l~~i~~~~~~----~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l 216 (242)
T d1xwdc1 163 -NGIQEIHNCAFN----GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSL 216 (242)
T ss_dssp -SCCCEECTTTTT----TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCC
T ss_pred -cccccccccccc----chhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCcc
Confidence 344455444332 344445544444555555543 35566666666665 335544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.09 E-value=3.2e-10 Score=94.87 Aligned_cols=162 Identities=13% Similarity=0.147 Sum_probs=93.2
Q ss_pred ccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 42 EFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
.++++++|+++++ .+.++. ++..+++|++|++.++ .+..++ .+..+++|++|+++++.... .
T Consensus 38 ~l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N--------------~l~~~~-~l~~l~~L~~L~l~~n~~~~-~ 99 (199)
T d2omxa2 38 DLDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN--------------QLTDIT-PLKNLTKLVDILMNNNQIAD-I 99 (199)
T ss_dssp HHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS--------------CCCCCG-GGTTCTTCCEEECCSSCCCC-C
T ss_pred HhcCCCEEECCCC-CCCCcc-ccccCCCcCcCccccc--------------cccCcc-cccCCccccccccccccccc-c
Confidence 4567777777776 455553 4566777777777441 111111 24556677777777665222 1
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLI 201 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (407)
.. + ..+++|+.|.+.++.... + ..+..+++|+.|++++|. +..+..+. .+++++.|.+.
T Consensus 100 ~~---l--~~l~~L~~L~l~~~~~~~-~---~~~~~l~~L~~L~l~~n~-l~~~~~l~-----------~~~~L~~L~l~ 158 (199)
T d2omxa2 100 TP---L--ANLTNLTGLTLFNNQITD-I---DPLKNLTNLNRLELSSNT-ISDISALS-----------GLTSLQQLNFS 158 (199)
T ss_dssp GG---G--TTCTTCSEEECCSSCCCC-C---GGGTTCTTCSEEECCSSC-CCCCGGGT-----------TCTTCSEEECC
T ss_pred cc---c--cccccccccccccccccc-c---cccchhhhhHHhhhhhhh-hccccccc-----------ccccccccccc
Confidence 10 1 336778888887765543 1 225677788888887763 33322111 24778888887
Q ss_pred ccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCcee
Q 047829 202 DLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNK 251 (407)
Q Consensus 202 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 251 (407)
++ .+..+. .+..+++|+.|+++++ +++.+++ ...+++|++|
T Consensus 159 ~n-~l~~l~----~l~~l~~L~~L~ls~N-~i~~i~~---l~~L~~L~~L 199 (199)
T d2omxa2 159 SN-QVTDLK----PLANLTTLERLDISSN-KVSDISV---LAKLTNLESL 199 (199)
T ss_dssp SS-CCCCCG----GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEE
T ss_pred cc-cccCCc----cccCCCCCCEEECCCC-CCCCCcc---ccCCCCCCcC
Confidence 65 344432 2456788888888886 4666532 2347777664
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.08 E-value=4.1e-10 Score=95.07 Aligned_cols=166 Identities=18% Similarity=0.190 Sum_probs=93.5
Q ss_pred ccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCCCccee
Q 047829 42 EFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFPRLKEI 121 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 121 (407)
.+.+|++|++++| .++.++ ++..+++|++|++.++ .+..++ .+..+++|++|+++++. ++..
T Consensus 44 ~L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n--------------~i~~l~-~~~~l~~L~~L~l~~n~-i~~l 105 (210)
T d1h6ta2 44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN--------------KLTDIK-PLANLKNLGWLFLDENK-VKDL 105 (210)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS--------------CCCCCG-GGTTCTTCCEEECCSSC-CCCG
T ss_pred HhcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCc--------------cccCcc-ccccCcccccccccccc-cccc
Confidence 3566777777766 555554 4566777777777441 111111 23455677777777664 4433
Q ss_pred ccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEccccccceeeccCCccccccccCCCCCcccEEecc
Q 047829 122 WHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLI 201 (407)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 201 (407)
+. + ..+++|+.|.+.+|.... + ..+..+++++.+.++++. +...... . .+++|+.+.+.
T Consensus 106 ~~---l--~~l~~L~~L~l~~~~~~~-~---~~l~~l~~l~~l~~~~n~-l~~~~~~---~--------~l~~L~~l~l~ 164 (210)
T d1h6ta2 106 SS---L--KDLKKLKSLSLEHNGISD-I---NGLVHLPQLESLYLGNNK-ITDITVL---S--------RLTKLDTLSLE 164 (210)
T ss_dssp GG---G--TTCTTCCEEECTTSCCCC-C---GGGGGCTTCCEEECCSSC-CCCCGGG---G--------GCTTCSEEECC
T ss_pred cc---c--cccccccccccccccccc-c---cccccccccccccccccc-ccccccc---c--------ccccccccccc
Confidence 21 1 236777777777765432 2 225667777777777653 2221110 0 24677777777
Q ss_pred ccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeeccc
Q 047829 202 DLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQK 255 (407)
Q Consensus 202 ~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 255 (407)
++ .+..+. .+..+++|+.|+++++ .++.++. ...+++|+.|++++
T Consensus 165 ~n-~l~~i~----~l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 165 DN-QISDIV----PLAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFS 209 (210)
T ss_dssp SS-CCCCCG----GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEE
T ss_pred cc-cccccc----cccCCCCCCEEECCCC-CCCCChh---hcCCCCCCEEEccC
Confidence 65 333332 1445777888888765 4665532 33477888887753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.02 E-value=2.1e-09 Score=89.73 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=39.8
Q ss_pred ccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhcc
Q 047829 277 TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESL 356 (407)
Q Consensus 277 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 356 (407)
.+++|+.|+++++ .+..++. +..+++|+.|++.++ +++.++ .+..+++|++|+++++ .++++. ....+
T Consensus 126 ~l~~L~~L~l~~n-~l~~~~~-----l~~~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~---~l~~L 193 (199)
T d2omxa2 126 NLTNLNRLELSSN-TISDISA-----LSGLTSLQQLNFSSN-QVTDLK-PLANLTTLERLDISSN-KVSDIS---VLAKL 193 (199)
T ss_dssp TCTTCSEEECCSS-CCCCCGG-----GTTCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG---GGGGC
T ss_pred hhhhhHHhhhhhh-hhccccc-----ccccccccccccccc-cccCCc-cccCCCCCCEEECCCC-CCCCCc---cccCC
Confidence 3455566666553 2333321 112566777777665 344443 2566777777777774 465542 23456
Q ss_pred ccCCEE
Q 047829 357 VNLERM 362 (407)
Q Consensus 357 ~~L~~L 362 (407)
++|+.|
T Consensus 194 ~~L~~L 199 (199)
T d2omxa2 194 TNLESL 199 (199)
T ss_dssp TTCSEE
T ss_pred CCCCcC
Confidence 666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.8e-09 Score=93.02 Aligned_cols=208 Identities=12% Similarity=0.033 Sum_probs=135.4
Q ss_pred ccCCeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccC
Q 047829 159 NNLGWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFIS 238 (407)
Q Consensus 159 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 238 (407)
++++.|+++++ .++.++... +. .+++|++|++.++.....+. ...+..++.++++.+..++++....+
T Consensus 29 ~~l~~L~Ls~n-~i~~l~~~~--------f~-~l~~L~~L~ls~n~~~~~i~--~~~f~~l~~l~~l~~~~~n~l~~~~~ 96 (242)
T d1xwdc1 29 RNAIELRFVLT-KLRVIQKGA--------FS-GFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIRIEKANNLLYINP 96 (242)
T ss_dssp SCCSEEEEESC-CCCEECTTT--------TT-TCTTCCEEEEESCTTCCEEC--SSSEESCTTCCEEEEECCTTCCEECT
T ss_pred CCCCEEECcCC-cCCccChhH--------hh-ccchhhhhhhccccccceee--cccccccccccccccccccccccccc
Confidence 57999999986 466554211 11 35899999999876555432 22356788999999999888888876
Q ss_pred cccccccCCCceeecccccccchhhhccccccccccccccCCcceEecc--cccccccccccccccccccCCcCceeecc
Q 047829 239 NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELS--RLHKVQHLWKENAESNKVFANLKSPEISE 316 (407)
Q Consensus 239 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~--~~~~l~~l~~~~~~~~~~~~~L~~L~l~~ 316 (407)
.. +..+++|++++++++... .. .....+.+++.+... ....+..++...+.. ....++.+++.+
T Consensus 97 ~~-~~~l~~L~~l~l~~~~l~-~~----------~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~--~~~~l~~L~l~~ 162 (242)
T d1xwdc1 97 EA-FQNLPNLQYLLISNTGIK-HL----------PDVHKIHSLQKVLLDIQDNINIHTIERNSFVG--LSFESVILWLNK 162 (242)
T ss_dssp TS-EECCTTCCEEEEESCCCC-SC----------CCCTTTCBSSCEEEEEESCTTCCEECTTSSTT--SBSSCEEEECCS
T ss_pred cc-ccccccccccccchhhhc-cc----------cccccccccccccccccccccccccccccccc--ccccceeeeccc
Confidence 54 456899999999887532 21 112234444444432 234566666655543 134677788876
Q ss_pred CccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEec
Q 047829 317 CSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGL 396 (407)
Q Consensus 317 c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l 396 (407)
+ .++.++......++++++....++.++.++. .....+++|+.|+++++ +++.++ ...+..+++|+.+++
T Consensus 163 n-~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~-~~f~~l~~L~~L~Ls~N-~l~~l~-------~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 163 N-GIQEIHNCAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRT-RIHSLP-------SYGLENLKKLRARST 232 (242)
T ss_dssp S-CCCEECTTTTTTCCEEEEECTTCTTCCCCCT-TTTTTSCCCSEEECTTS-CCCCCC-------SSSCTTCCEEESSSE
T ss_pred c-cccccccccccchhhhccccccccccccccH-HHhcCCCCCCEEECCCC-cCCccC-------HHHHcCCcccccCcC
Confidence 4 4667776666677888887777788888743 44567899999999988 466664 123445555665555
Q ss_pred CCCCCc
Q 047829 397 DCLPSL 402 (407)
Q Consensus 397 ~~cp~l 402 (407)
.++..|
T Consensus 233 ~~l~~l 238 (242)
T d1xwdc1 233 YNLKKL 238 (242)
T ss_dssp ESSSCS
T ss_pred CCCCcC
Confidence 544433
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=98.99 E-value=3.8e-09 Score=88.93 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=28.0
Q ss_pred cCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhccccCCEEEEe
Q 047829 306 FANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKIT 365 (407)
Q Consensus 306 ~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 365 (407)
+++|+.++++++. +..+++ +..+++|++|+++++ .+++++ ....+++|+.|+++
T Consensus 155 l~~L~~l~l~~n~-l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 155 LTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKNLDVLELF 208 (210)
T ss_dssp CTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTTCSEEEEE
T ss_pred ccccccccccccc-cccccc-ccCCCCCCEEECCCC-CCCCCh---hhcCCCCCCEEEcc
Confidence 4556666665543 333332 445566666666653 454441 13345566666654
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.67 E-value=5.1e-09 Score=80.09 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=59.2
Q ss_pred ceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHh
Q 047829 21 KFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKE 100 (407)
Q Consensus 21 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (407)
|+|++++. +++.++. ...+++|++|+++++ .++.+|..+..+++|++|++.+
T Consensus 1 R~L~Ls~n-~l~~l~~---l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~----------------------- 52 (124)
T d1dcea3 1 RVLHLAHK-DLTVLCH---LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASD----------------------- 52 (124)
T ss_dssp SEEECTTS-CCSSCCC---GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-----------------------
T ss_pred CEEEcCCC-CCCCCcc---cccCCCCCEEECCCC-ccCcchhhhhhhhccccccccc-----------------------
Confidence 45666663 4554432 335677777777776 6667766666677777766643
Q ss_pred hcCCCCccEEEeccCCCcceeccCCCCCccccCCceEEEEecCCCCCcCCccchhhccccCCeeEEcccc
Q 047829 101 MIGFRDIWYLQLSYFPRLKEIWHGQALPVSFFNNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNCD 170 (407)
Q Consensus 101 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 170 (407)
+. ++..+ + + ..+++|+.|.+.+|... +++....+..+++|+.+++++++
T Consensus 53 --------------N~-i~~l~-~--~--~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 53 --------------NA-LENVD-G--V--ANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp --------------SC-CCCCG-G--G--TTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTSG
T ss_pred --------------cc-ccccC-c--c--ccccccCeEECCCCccC-CCCCchhhcCCCCCCEEECCCCc
Confidence 21 22111 0 1 23667777777776443 33333446777888888887754
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.59 E-value=2.9e-08 Score=75.75 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=52.5
Q ss_pred CCceeeccceeecccceeeeCcccccccccccccccccCCccEEeecCCCccccccccccCCCCcceeEEEe
Q 047829 6 VGEEVKENRIAFSELKFLILDYLPRLTSFCLENYTLEFPSLERVSVTFCPDMKTFSQGILSTPKLHKVQVIV 77 (407)
Q Consensus 6 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 77 (407)
++..+......+++|+.|++++. +++.+|.. ...+++|++|+++++ .++.+| ++..+++|++|++.+
T Consensus 8 n~l~~l~~l~~l~~L~~L~ls~N-~l~~lp~~--~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 8 KDLTVLCHLEQLLLVTHLDLSHN-RLRALPPA--LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 74 (124)
T ss_dssp SCCSSCCCGGGGTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CCCCCCcccccCCCCCEEECCCC-ccCcchhh--hhhhhcccccccccc-cccccC-ccccccccCeEECCC
Confidence 33344445567899999999984 68888754 457899999999999 788887 578889999998854
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.2e-09 Score=99.07 Aligned_cols=86 Identities=16% Similarity=0.041 Sum_probs=45.4
Q ss_pred CCcceEecccccccccccccccc-cccccCCcCceeeccCcccc-----ccccccc-cccccCEEEeccCcCcccccCch
Q 047829 279 PQLRFLELSRLHKVQHLWKENAE-SNKVFANLKSPEISECSKLQ-----KLVPASW-HLENLATLKVSKCHGLINLLTLS 351 (407)
Q Consensus 279 ~~L~~L~L~~~~~l~~l~~~~~~-~~~~~~~L~~L~l~~c~~l~-----~l~~~~~-~~~~L~~L~l~~c~~l~~~~~~~ 351 (407)
..|+.+.++++. ++......+. .....++|++|++++++ +. .++..+. ..+.|++|++++| .+.+.....
T Consensus 312 ~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~ 388 (460)
T d1z7xw1 312 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS 388 (460)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred cccccccccccc-hhhhhhhhcccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHH
Confidence 467777777642 2221111111 01225578888887764 32 1222222 3456888888886 454421111
Q ss_pred ---hhhccccCCEEEEecc
Q 047829 352 ---TSESLVNLERMKITDC 367 (407)
Q Consensus 352 ---~~~~l~~L~~L~i~~c 367 (407)
.....++|++|+++++
T Consensus 389 l~~~l~~~~~L~~L~Ls~N 407 (460)
T d1z7xw1 389 LAATLLANHSLRELDLSNN 407 (460)
T ss_dssp HHHHHHHCCCCCEEECCSS
T ss_pred HHHHHhcCCCCCEEECCCC
Confidence 2234578888888777
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.2e-07 Score=75.80 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=87.8
Q ss_pred ccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccccccccCCcCceeeccCcccccc
Q 047829 244 LHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKL 323 (407)
Q Consensus 244 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l 323 (407)
.+.++++|+++++.. ..+.. ....+++|+.|++++ +.+..++. +. .+++|+.|++++|. +..+
T Consensus 16 n~~~lr~L~L~~n~I-~~i~~---------~~~~l~~L~~L~Ls~-N~i~~l~~--~~---~l~~L~~L~ls~N~-i~~l 78 (162)
T d1a9na_ 16 NAVRDRELDLRGYKI-PVIEN---------LGATLDQFDAIDFSD-NEIRKLDG--FP---LLRRLKTLLVNNNR-ICRI 78 (162)
T ss_dssp CTTSCEEEECTTSCC-CSCCC---------GGGGTTCCSEEECCS-SCCCEECC--CC---CCSSCCEEECCSSC-CCEE
T ss_pred CcCcCcEEECCCCCC-CccCc---------cccccccCCEEECCC-CCCCccCC--cc---cCcchhhhhccccc-ccCC
Confidence 466889999988752 22211 134578999999999 46766642 33 38899999999975 6667
Q ss_pred cccc-ccccccCEEEeccCcCcccccCchhhhccccCCEEEEecccchhhhhccccCCcccceeEecccceEecC
Q 047829 324 VPAS-WHLENLATLKVSKCHGLINLLTLSTSESLVNLERMKITDCKMMEEIIQSQVGEEAEDCIVFRKLEYLGLD 397 (407)
Q Consensus 324 ~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~g~~~~~~~~~~~L~~L~l~ 397 (407)
++.+ ..+++|++|+++++ .+.++........+++|+++++.+|+ +...+ +-....+..+|+|++||-+
T Consensus 79 ~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~----~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 79 GEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKK----HYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp CSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGST----THHHHHHHHCTTCSEETTE
T ss_pred Cccccccccccccceeccc-cccccccccccccccccchhhcCCCc-ccccc----chHHHHHHHCCCcCeeCCC
Confidence 6544 56899999999984 56655332345678999999999984 33222 0000124567888887643
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=9.3e-08 Score=76.54 Aligned_cols=130 Identities=12% Similarity=0.055 Sum_probs=92.8
Q ss_pred cccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccc
Q 047829 216 IIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHL 295 (407)
Q Consensus 216 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l 295 (407)
+.++.++++|++.++ +++.++ .....+++|+.|+++++. +..+ +....+++|+.|+++++ .+..+
T Consensus 14 ~~n~~~lr~L~L~~n-~I~~i~--~~~~~l~~L~~L~Ls~N~-i~~l----------~~~~~l~~L~~L~ls~N-~i~~l 78 (162)
T d1a9na_ 14 YTNAVRDRELDLRGY-KIPVIE--NLGATLDQFDAIDFSDNE-IRKL----------DGFPLLRRLKTLLVNNN-RICRI 78 (162)
T ss_dssp EECTTSCEEEECTTS-CCCSCC--CGGGGTTCCSEEECCSSC-CCEE----------CCCCCCSSCCEEECCSS-CCCEE
T ss_pred ccCcCcCcEEECCCC-CCCccC--ccccccccCCEEECCCCC-CCcc----------CCcccCcchhhhhcccc-cccCC
Confidence 446778999999885 576664 234568999999999875 3322 12566899999999994 57777
Q ss_pred cccccccccccCCcCceeeccCccccccc--cccccccccCEEEeccCcCcccccC--chhhhccccCCEEEEe
Q 047829 296 WKENAESNKVFANLKSPEISECSKLQKLV--PASWHLENLATLKVSKCHGLINLLT--LSTSESLVNLERMKIT 365 (407)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~i~ 365 (407)
+...+.. +++|+.|+++++. ++.++ ..+..+++|+++++++|+ +...+. ......+|+|+.|+-.
T Consensus 79 ~~~~~~~---l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~ 147 (162)
T d1a9na_ 79 GEGLDQA---LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 147 (162)
T ss_dssp CSCHHHH---CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred Ccccccc---ccccccceecccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence 7654443 8899999999875 44444 246788999999999964 444422 2245678999988743
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.44 E-value=4.1e-07 Score=74.91 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=69.4
Q ss_pred CCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccc
Q 047829 220 PMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKEN 299 (407)
Q Consensus 220 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~ 299 (407)
+.+++|++.+ +.++...+...+..+++|++|+++++....-.. .....+++|+.|++++ +.+..++.+.
T Consensus 29 ~~l~~L~Ls~-N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~---------~~~~~~~~L~~L~Ls~-N~l~~l~~~~ 97 (192)
T d1w8aa_ 29 LHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIEP---------NAFEGASHIQELQLGE-NKIKEISNKM 97 (192)
T ss_dssp TTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT---------TTTTTCTTCCEEECCS-CCCCEECSSS
T ss_pred CCCCEEEeCC-CCCcccccccccCCCceEeeeeccccccccccc---------cccccccccceeeecc-ccccccCHHH
Confidence 5788888876 456554444445567888888887665432111 1245567888888887 4677777766
Q ss_pred cccccccCCcCceeeccCcccccccc-ccccccccCEEEeccC
Q 047829 300 AESNKVFANLKSPEISECSKLQKLVP-ASWHLENLATLKVSKC 341 (407)
Q Consensus 300 ~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c 341 (407)
|.. +++|+.|+++++ .++.+++ .+..+++|+++++++.
T Consensus 98 F~~---l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N 136 (192)
T d1w8aa_ 98 FLG---LHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp STT---CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred HhC---CCcccccccCCc-cccccCHHHhcCCccccccccccc
Confidence 654 777888888775 3555554 3566778888888763
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.37 E-value=8.6e-07 Score=72.92 Aligned_cols=109 Identities=15% Similarity=0.074 Sum_probs=67.7
Q ss_pred CcccEEeccccccccccccCCCccccCCCccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhcccccccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNFTGNIIELPMFWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLF 272 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 272 (407)
+++++|++++..-...+. ...+..+++|+.|++.+. .+..+++.. +..+++|++|+++++.. ..+.+
T Consensus 29 ~~l~~L~Ls~N~i~~~~~--~~~f~~l~~L~~L~L~~N-~i~~~~~~~-~~~~~~L~~L~Ls~N~l-~~l~~-------- 95 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISS--DGLFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGENKI-KEISN-------- 95 (192)
T ss_dssp TTCSEEECCSCCCCSBCC--SCSGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSCCC-CEECS--------
T ss_pred CCCCEEEeCCCCCccccc--ccccCCCceEeeeecccc-ccccccccc-cccccccceeeeccccc-cccCH--------
Confidence 577888887653222221 223556778888888663 455554433 34477888888877642 22211
Q ss_pred ccccccCCcceEecccccccccccccccccccccCCcCceeeccCc
Q 047829 273 DEKVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECS 318 (407)
Q Consensus 273 ~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~ 318 (407)
..+..+++|+.|+|++ +.++.++.+.+.. +++|+.+++.+.+
T Consensus 96 ~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~---l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 96 KMFLGLHQLKTLNLYD-NQISCVMPGSFEH---LNSLTSLNLASNP 137 (192)
T ss_dssp SSSTTCTTCCEEECCS-SCCCEECTTSSTT---CTTCCEEECTTCC
T ss_pred HHHhCCCcccccccCC-ccccccCHHHhcC---Ccccccccccccc
Confidence 1245677888888887 5677777776654 7778888887754
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.6e-07 Score=86.35 Aligned_cols=167 Identities=11% Similarity=-0.013 Sum_probs=87.1
Q ss_pred CcccEEeccccccccccccC-CCccccCCCccEEeEecCCCCccccCcc----cccccCCCceeecccccccchhhhccc
Q 047829 193 PSLSWLRLIDLPKLKRFCNF-TGNIIELPMFWSLTIENCPDMETFISNS----TSILHMTADNKEPQKLKSEENLLVADQ 267 (407)
Q Consensus 193 ~~L~~L~l~~~~~l~~i~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~----~~~~l~~L~~L~l~~~~~l~~~~~~~~ 267 (407)
.+++.+++.++..-...+.. .......+.++.+++.++ .+....... +....+.|+.+.++++..-...+..
T Consensus 255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n-~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~-- 331 (460)
T d1z7xw1 255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH-- 331 (460)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH--
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccccchhhccccccccccccccccccchhhhhhhh--
Confidence 46666666655321110000 001223566777776553 233211111 1123457788888776532211110
Q ss_pred cccccccccccCCcceEecccccccccccccccc-cc-cccCCcCceeeccCccccc-----cccccccccccCEEEecc
Q 047829 268 IQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAE-SN-KVFANLKSPEISECSKLQK-----LVPASWHLENLATLKVSK 340 (407)
Q Consensus 268 ~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~-~~-~~~~~L~~L~l~~c~~l~~-----l~~~~~~~~~L~~L~l~~ 340 (407)
-.......++|++|+++++ .++.-....+. .+ ...+.|+.|++++|. ++. +...+...++|++|++++
T Consensus 332 ---l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~ 406 (460)
T d1z7xw1 332 ---FSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN 406 (460)
T ss_dssp ---HHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred ---cccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCC
Confidence 0011234568999999985 44431111110 01 125679999999985 442 334456679999999998
Q ss_pred CcCcccccCchhhh----ccccCCEEEEeccc
Q 047829 341 CHGLINLLTLSTSE----SLVNLERMKITDCK 368 (407)
Q Consensus 341 c~~l~~~~~~~~~~----~l~~L~~L~i~~c~ 368 (407)
+ .+.+.....+.. +...|+.+.+.++.
T Consensus 407 N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~ 437 (460)
T d1z7xw1 407 N-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 437 (460)
T ss_dssp S-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred C-cCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence 4 665542222222 23468999998874
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.24 E-value=2.8e-08 Score=82.52 Aligned_cols=84 Identities=23% Similarity=0.225 Sum_probs=42.3
Q ss_pred ccCCcceEecccccccccccccccccccccCCcCceeeccCccccccccccccccccCEEEeccCcCcccccCchhhhcc
Q 047829 277 TFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKCHGLINLLTLSTSESL 356 (407)
Q Consensus 277 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 356 (407)
.+++|+.|+++++ .++.++... ..+++|+.|+++++ .++.++ .+..+++|++|++++ +.+.++........+
T Consensus 68 ~l~~L~~L~Ls~N-~i~~i~~~~----~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l 139 (198)
T d1m9la_ 68 GMENLRILSLGRN-LIKKIENLD----AVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAAL 139 (198)
T ss_dssp HHTTCCEEECCEE-EECSCSSHH----HHHHHCCEEECSEE-ECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTT
T ss_pred CCccccChhhccc-ccccccccc----cccccccccccccc-cccccc-ccccccccccccccc-chhccccccccccCC
Confidence 3455555555542 334433210 11345666666654 344443 245566677777765 344443221234456
Q ss_pred ccCCEEEEeccc
Q 047829 357 VNLERMKITDCK 368 (407)
Q Consensus 357 ~~L~~L~i~~c~ 368 (407)
++|+.|++.+++
T Consensus 140 ~~L~~L~L~~N~ 151 (198)
T d1m9la_ 140 DKLEDLLLAGNP 151 (198)
T ss_dssp TTCSEEEECSSH
T ss_pred CccceeecCCCc
Confidence 677777776663
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.18 E-value=2.9e-09 Score=88.72 Aligned_cols=33 Identities=24% Similarity=0.125 Sum_probs=17.4
Q ss_pred CCceEEEEecCCCCCcCCccchhhccccCCeeEEccc
Q 047829 133 NNLCKLVVDDCTNMSSAIPVNLLRCLNNLGWLEVRNC 169 (407)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 169 (407)
++|+.|++.+|.. +.+ ..+..+++|+.|++++|
T Consensus 93 ~~L~~L~l~~N~i-~~l---~~~~~l~~L~~L~L~~N 125 (198)
T d1m9la_ 93 DTLEELWISYNQI-ASL---SGIEKLVNLRVLYMSNN 125 (198)
T ss_dssp HHCCEEECSEEEC-CCH---HHHHHHHHSSEEEESEE
T ss_pred ccccccccccccc-ccc---ccccccccccccccccc
Confidence 4566666655532 222 12455666666666654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.02 E-value=6.6e-07 Score=80.82 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=41.7
Q ss_pred ccCCccEEeecCCCccc-----cccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCC
Q 047829 42 EFPSLERVSVTFCPDMK-----TFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFP 116 (407)
Q Consensus 42 ~~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 116 (407)
....|+.|+++++ .+. .+...+...++|+.+++.+.... ......+..+..+...+...++|++|+++++.
T Consensus 29 ~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 29 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTG---RVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTT---SCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred hCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCccc---ccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 4678888888887 332 24444566778888887542111 00111223455566666677778888877764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=1.9e-05 Score=62.19 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=66.6
Q ss_pred ccccCCcceEecccccccccccccccccccccCCcCceeeccCccccccc-cccccccccCEEEeccCcCcccccCchhh
Q 047829 275 KVTFPQLRFLELSRLHKVQHLWKENAESNKVFANLKSPEISECSKLQKLV-PASWHLENLATLKVSKCHGLINLLTLSTS 353 (407)
Q Consensus 275 ~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 353 (407)
+..+++|++|.+.+.+.++.++...|.. +++|+.|+++++ +++.++ ..+..+++|++|++++ +.++.++. ++.
T Consensus 27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~---l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~-~~~ 100 (156)
T d2ifga3 27 LPGAENLTELYIENQQHLQHLELRDLRG---LGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF-NALESLSW-KTV 100 (156)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCS---CCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS-SCCSCCCS-TTT
T ss_pred ccCccccCeeecCCCccccccCchhhcc---ccccCcceeecc-ccCCcccccccccccccceeccC-CCCcccCh-hhh
Confidence 4567899999998877788888877765 899999999986 467665 4467899999999998 67877744 334
Q ss_pred hccccCCEEEEecc
Q 047829 354 ESLVNLERMKITDC 367 (407)
Q Consensus 354 ~~l~~L~~L~i~~c 367 (407)
. ...|++|++++.
T Consensus 101 ~-~~~l~~L~L~~N 113 (156)
T d2ifga3 101 Q-GLSLQELVLSGN 113 (156)
T ss_dssp C-SCCCCEEECCSS
T ss_pred c-cccccccccCCC
Confidence 3 347999999865
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.77 E-value=1.8e-06 Score=77.91 Aligned_cols=258 Identities=14% Similarity=0.088 Sum_probs=119.5
Q ss_pred hHHHHHHhhcCCCCccEEEeccCCCccee---ccCCCCCccccCCceEEEEecCCCCC--cCCc------cchhhccccC
Q 047829 93 TIQKCYKEMIGFRDIWYLQLSYFPRLKEI---WHGQALPVSFFNNLCKLVVDDCTNMS--SAIP------VNLLRCLNNL 161 (407)
Q Consensus 93 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~------~~~~~~l~~L 161 (407)
.+..+...+.....|++|+++++. +... .....+ ...++|+.+.+.++.... +..+ ...+...++|
T Consensus 19 ~~~~l~~~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L 95 (344)
T d2ca6a1 19 DEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENI--ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95 (344)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTT--TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhhCCCCCEEECcCCc-CCHHHHHHHHHHH--HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCc
Confidence 344455556677889999999875 3211 111101 236889999998764321 1111 1234567889
Q ss_pred CeeEEccccccceeeccCCccccccccCCCCCcccEEeccccccccc-----cccC------CCccccCCCccEEeEecC
Q 047829 162 GWLEVRNCDSLEEVFHLEELSAKEEHIGPLFPSLSWLRLIDLPKLKR-----FCNF------TGNIIELPMFWSLTIENC 230 (407)
Q Consensus 162 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~------~~~~~~~~~L~~L~l~~c 230 (407)
+.|++++|. +.... ...+...+. ..++|+.|.+.++. +.. +... .......+.|+.+.+.+.
T Consensus 96 ~~L~L~~n~-i~~~~----~~~l~~~l~-~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n 168 (344)
T d2ca6a1 96 HTVRLSDNA-FGPTA----QEPLIDFLS-KHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 168 (344)
T ss_dssp CEEECCSCC-CCTTT----HHHHHHHHH-HCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred ccccccccc-ccccc----ccchhhhhc-ccccchheeccccc-ccccccccccccccccccccccccCcccceeecccc
Confidence 999998763 22110 110111111 13678888887663 111 0000 000123556777777653
Q ss_pred CCCccccC---cccccccCCCceeecccccccchhhhccccccccccccccCCcceEeccccccccccccccc-cccccc
Q 047829 231 PDMETFIS---NSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENA-ESNKVF 306 (407)
Q Consensus 231 ~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~-~~~~~~ 306 (407)
.+..... ......+++|+.|++++|..-..-+. ..........++|+.|+++++ .++......+ ..+..+
T Consensus 169 -~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~----~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~ 242 (344)
T d2ca6a1 169 -RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE----HLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSW 242 (344)
T ss_dssp -CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH----HHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGC
T ss_pred -cccccccccccchhhhhhhhcccccccccccccccc----cchhhhhcchhhhcccccccc-ccccccccccccccccc
Confidence 2322111 11123456777777766642111000 000111344667777777663 2322111111 012235
Q ss_pred CCcCceeeccCccccc----cccccc--cccccCEEEeccCcCcccccC----chhhhccccCCEEEEecc
Q 047829 307 ANLKSPEISECSKLQK----LVPASW--HLENLATLKVSKCHGLINLLT----LSTSESLVNLERMKITDC 367 (407)
Q Consensus 307 ~~L~~L~l~~c~~l~~----l~~~~~--~~~~L~~L~l~~c~~l~~~~~----~~~~~~l~~L~~L~i~~c 367 (407)
++|+.|++++|.--.. +-..+. ..+.|++|+++++ .+..... ..+....+.|++|++.++
T Consensus 243 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N 312 (344)
T d2ca6a1 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN 312 (344)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence 6677777776642111 111111 1345677777663 3433211 111123456666666654
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=6.1e-05 Score=59.12 Aligned_cols=104 Identities=12% Similarity=-0.014 Sum_probs=74.7
Q ss_pred ccEEeEecCCCCccccCcccccccCCCceeecccccccchhhhccccccccccccccCCcceEecccccccccccccccc
Q 047829 222 FWSLTIENCPDMETFISNSTSILHMTADNKEPQKLKSEENLLVADQIQHLFDEKVTFPQLRFLELSRLHKVQHLWKENAE 301 (407)
Q Consensus 222 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~ 301 (407)
.+.+++.+ .++...+. . ...+++|++|++.+...++.+... .+..+++|+.|++++ +++..++...|.
T Consensus 10 ~~~l~c~~-~~~~~~p~-~-l~~l~~l~~L~l~~n~~l~~i~~~--------~f~~l~~L~~L~Ls~-N~l~~i~~~~f~ 77 (156)
T d2ifga3 10 SSGLRCTR-DGALDSLH-H-LPGAENLTELYIENQQHLQHLELR--------DLRGLGELRNLTIVK-SGLRFVAPDAFH 77 (156)
T ss_dssp SSCEECCS-SCCCTTTT-T-SCSCSCCSEEECCSCSSCCEECGG--------GSCSCCCCSEEECCS-SCCCEECTTGGG
T ss_pred CCeEEecC-CCCccCcc-c-ccCccccCeeecCCCccccccCch--------hhccccccCcceeec-cccCCccccccc
Confidence 34455444 23434322 2 234789999999877766654322 256789999999998 578888887776
Q ss_pred cccccCCcCceeeccCccccccccccccccccCEEEeccC
Q 047829 302 SNKVFANLKSPEISECSKLQKLVPASWHLENLATLKVSKC 341 (407)
Q Consensus 302 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 341 (407)
. +++|+.|+++++. ++.+|.......+|++|++++.
T Consensus 78 ~---l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~N 113 (156)
T d2ifga3 78 F---TPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGN 113 (156)
T ss_dssp S---CSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred c---cccccceeccCCC-CcccChhhhccccccccccCCC
Confidence 5 8999999999864 7788876666668999999984
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.0041 Score=48.51 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=8.2
Q ss_pred hhccccCCeeEEccc
Q 047829 155 LRCLNNLGWLEVRNC 169 (407)
Q Consensus 155 ~~~l~~L~~L~l~~~ 169 (407)
+..+++|+.|++++|
T Consensus 87 ~~~l~~L~~L~Ls~N 101 (162)
T d1koha1 87 VQKAPNLKILNLSGN 101 (162)
T ss_dssp HHHSTTCCCCCCTTS
T ss_pred HhhCCcccccccccC
Confidence 445555555555553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.0094 Score=46.30 Aligned_cols=11 Identities=45% Similarity=0.721 Sum_probs=4.8
Q ss_pred cCCcceEeccc
Q 047829 278 FPQLRFLELSR 288 (407)
Q Consensus 278 l~~L~~L~L~~ 288 (407)
+++|+.|++++
T Consensus 90 l~~L~~L~Ls~ 100 (162)
T d1koha1 90 APNLKILNLSG 100 (162)
T ss_dssp STTCCCCCCTT
T ss_pred CCccccccccc
Confidence 34444444444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.87 E-value=0.013 Score=45.72 Aligned_cols=13 Identities=8% Similarity=-0.125 Sum_probs=6.4
Q ss_pred hccccCCeeEEcc
Q 047829 156 RCLNNLGWLEVRN 168 (407)
Q Consensus 156 ~~l~~L~~L~l~~ 168 (407)
...++|+.|+++.
T Consensus 128 ~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 128 EENESLLRVGISF 140 (167)
T ss_dssp HHCSSCCEEECCC
T ss_pred HhCCCccEeeCcC
Confidence 3445555555543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.57 E-value=0.024 Score=44.05 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=17.1
Q ss_pred cccceeeeCcccccccccccc---cccccCCccEEeecCC
Q 047829 18 SELKFLILDYLPRLTSFCLEN---YTLEFPSLERVSVTFC 54 (407)
Q Consensus 18 ~~L~~L~l~~~~~l~~~~~~~---~~~~~~~L~~L~l~~c 54 (407)
+.|+.|+++++..+..-.... .....+.|++|++++|
T Consensus 15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n 54 (167)
T d1pgva_ 15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 54 (167)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence 456666666543332221111 1123455666666665
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=93.57 E-value=0.026 Score=43.80 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=31.4
Q ss_pred cCCccEEeecCCCccc-----cccccccCCCCcceeEEEeecccccccccCcchhhHHHHHHhhcCCCCccEEEeccCC
Q 047829 43 FPSLERVSVTFCPDMK-----TFSQGILSTPKLHKVQVIVKEEGELYHREGNLNSTIQKCYKEMIGFRDIWYLQLSYFP 116 (407)
Q Consensus 43 ~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 116 (407)
.++|++|+++++..+. .+...+...++|++|++++ .+--+.....+.+.+...++++.++++++.
T Consensus 16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~---------n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~ 85 (166)
T d1io0a_ 16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG---------TRSNDPVAFALAEMLKVNNTLKSLNVESNF 85 (166)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT---------SCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccC---------CcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence 3666666666543332 1333344555666666632 111122333344444445566666666554
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| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=90.26 E-value=0.12 Score=39.69 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=55.8
Q ss_pred ecccceeeeCccccccccccccc---ccccCCccEEeecCCCccc-----cccccccCCCCcceeEEEeecccccccccC
Q 047829 17 FSELKFLILDYLPRLTSFCLENY---TLEFPSLERVSVTFCPDMK-----TFSQGILSTPKLHKVQVIVKEEGELYHREG 88 (407)
Q Consensus 17 l~~L~~L~l~~~~~l~~~~~~~~---~~~~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~ 88 (407)
-++|+.|+++++..+..-..... ....+.|++|++++| .+. .+-..+...+.++.+++.++ .
T Consensus 16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~---------~ 85 (166)
T d1io0a_ 16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN---------F 85 (166)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS---------C
T ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc---------c
Confidence 37899999998666643332211 235789999999999 443 23344456788999988541 1
Q ss_pred cchhhHHHHHHhhcCCCCccEEEecc
Q 047829 89 NLNSTIQKCYKEMIGFRDIWYLQLSY 114 (407)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~L~~L~l~~ 114 (407)
.-+..+..+.+.+...++|+.++++.
T Consensus 86 ~~~~g~~~l~~~l~~~~~L~~l~L~l 111 (166)
T d1io0a_ 86 ISGSGILALVEALQSNTSLIELRIDN 111 (166)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCC
T ss_pred ccchhHHHHHHHHHhCccccEEeecc
Confidence 12344566666666666666666653
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