Citrus Sinensis ID: 047834

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
CSQSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEEMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVRVSLSPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEccEEEEccccEEEcccccccccccEEEEcccccccccHHHHcccccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHcccccccHHHHHHcccccccHHHHHHHHHHHEccccccEEcHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEEEEEEcccEEEEcccccccccEEEEEEcccccccccHHHHHHccEEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
CSQSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELknypaefpgmgdlifpclkfsydhlssetHRKCFLFCALFLKNQlirkdehidlwigegllrdsHNIAVARLQGESIIDSLIRVCLLEEMHDMLRDLALWIASQDKGNkilaskpengkliidQQSVTWNKAvrvslsppscprLLTLLVRYASMkglpewffqsmpalrvlewsrngdltklpmqk
Flexible Loop (DISEMBL)
CSQSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEEMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVrvslsppscprLLTLLVRYASMKGLPEWFFQSMPALRVLEWsrngdltklpmqk
Low Complexity Region (SEG)
CSQSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEEMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVRVSLSPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK
Disordered region (IsUnstruct)
******ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEEMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVRVSLSPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSR***********
Disordered Region (DISOPRED)
***SYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKN******GM*DLIFPCLKFSYDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEEMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVRVSLSPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM**
Disordered Region (DISEMBL)
********VLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEEMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVRVSLSPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK
Disordered Region (DISPRO)
CSQSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEEMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVRVSLSPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
CSQSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEEMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVRVSLSPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q8RXS5	888	Probable disease resistan	yes	no	0.935	0.244	0.388	1e-33
Q42484	909	Disease resistance protei	no	no	0.943	0.240	0.358	2e-31
P60838	894	Probable disease resistan	no	no	0.926	0.240	0.382	7e-30
Q9C8T9	898	Putative disease resistan	no	no	0.948	0.244	0.355	3e-29
Q9FG91	848	Probable disease resistan	no	no	0.948	0.259	0.359	2e-28
P60839	884	Probable disease resistan	no	no	0.939	0.246	0.35	2e-28
Q9SI85	893	Probable disease resistan	no	no	0.961	0.249	0.352	4e-28
O82484	892	Putative disease resistan	no	no	0.935	0.243	0.358	5e-28
O64790	762	Probable disease resistan	no	no	0.922	0.280	0.350	5e-28
Q9LVT3	948	Probable disease resistan	no	no	0.948	0.232	0.381	9e-28

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/242 (38%), Positives = 129/242 (53%), Gaps = 25/242 (10%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A  +   C  + L L  IG  MA  R    EW +A++ L +  AEF GM D I P LK+S
Sbjct: 339 ARTVAKKCRGLPLALNVIGETMAYKRT-VQEWRSAIDVLTSSAAEFSGMEDEILPILKYS 397

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YD+L SE  + CF +CALF ++  I K++ +D WIGEG +    N   A  QG  II  L
Sbjct: 398 YDNLKSEQLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFI--DRNKGKAENQGYEIIGIL 455

Query: 127 IRVCLLEE-------MHDMLRDLALWIAS---QDKGNKILASKPENGKLIIDQQSVTWNK 176
           +R CLL E       MHD++R++ALWIAS   + K N I+ +  ++  +    +   W  
Sbjct: 456 VRSCLLMEENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNI---PEIEKWKV 512

Query: 177 AVRVSL---------SPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK 227
           A RVSL           P  P+L+TLL+R   +  +   FF+ MP L VL+ S N DL  
Sbjct: 513 ARRVSLMFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRH 572

Query: 228 LP 229
           LP
Sbjct: 573 LP 574

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/243 (35%), Positives = 134/243 (55%), Gaps = 24/243 (9%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A ++   C  + L LIT+G AMA  R    EW +A   L  +PAE  GM + +F  LKFS
Sbjct: 338 AEIIVSKCGGLPLALITLGGAMAH-RETEEEWIHASEVLTRFPAEMKGM-NYVFALLKFS 395

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YD+L S+  R CFL+CALF +   I  ++ ++ W+GEG L  SH +     +G  +I  L
Sbjct: 396 YDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTI-YKGYFLIGDL 454

Query: 127 IRVCLLE--------EMHDMLRDLALWIAS-QDKGNKILASKPENGKLIIDQQSVTWNKA 177
              CLLE        +MH+++R  ALW+AS Q    +++  +P  G      ++  W +A
Sbjct: 455 KAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGH-TEAPKAENWRQA 513

Query: 178 VRVSL------SPPS---CPRLLTLLVRY-ASMKGLPEWFFQSMPALRVLEWSRNGDLTK 227
           + +SL      + P    CP+L TL+++  +S+K +P  FF  MP LRVL+ S    +T+
Sbjct: 514 LVISLLDNRIQTLPEKLICPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLSFTS-ITE 572

Query: 228 LPM 230
           +P+
Sbjct: 573 IPL 575

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  130 bits (327), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 127/238 (53%), Gaps = 23/238 (9%)

Query: 14  CNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSE 73
           C  + L L  IG  MA  R    EW NA++ L +Y AEFPGM + I P LK+SYD+L+ E
Sbjct: 348 CCGLPLALNVIGETMACKRM-VQEWRNAIDVLSSYAAEFPGM-EQILPILKYSYDNLNKE 405

Query: 74  THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLE 133
             + CFL+C+LF ++  + K+  ID WI EG + ++ +   A  QG  II  L+R CLL 
Sbjct: 406 QVKPCFLYCSLFPEDYRMEKERLIDYWICEGFIDENESRERALSQGYEIIGILVRACLLL 465

Query: 134 E---------MHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSV-TWNKAVRVSL- 182
           E         MHD++R++ALWIAS D G        + G  + +   V  W+   R+SL 
Sbjct: 466 EEAINKEQVKMHDVVREMALWIAS-DLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLM 524

Query: 183 --------SPPSCPRLLTL-LVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231
                     P C  L TL L +  S+  + + FF+ +P L VL+ S N  L KLP Q
Sbjct: 525 ENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNSSLRKLPNQ 582

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/245 (35%), Positives = 127/245 (51%), Gaps = 25/245 (10%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           + V+   C  + L L  +   M S +    EW +A+  L +Y A+F GM D I P LK+S
Sbjct: 337 SRVVAKKCCGLPLALNVVSETM-SCKRTVQEWRHAIYVLNSYAAKFSGMDDKILPLLKYS 395

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YD L  E  + C L+CALF ++  IRK+  I+ WI E ++  S  I  A  QG  II SL
Sbjct: 396 YDSLKGEDVKMCLLYCALFPEDAKIRKENLIEYWICEEIIDGSEGIDKAENQGYEIIGSL 455

Query: 127 IRVCLLEE-----------MHDMLRDLALWIASQ-DKGNKILASKPENG-KLIIDQQSVT 173
           +R  LL E           +HD++R++ALWIAS   K N+    +   G + I+  ++  
Sbjct: 456 VRASLLMEEVELDGANIVCLHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVEN-- 513

Query: 174 WNKAVRVSLSPPS---------CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGD 224
           WN   R+SL   +         C  L TLL++   ++ +   FF SMP L VL+ S N  
Sbjct: 514 WNVVRRMSLMKNNIAHLDGRLDCMELTTLLLQSTHLEKISSEFFNSMPKLAVLDLSGNYY 573

Query: 225 LTKLP 229
           L++LP
Sbjct: 574 LSELP 578

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 127/242 (52%), Gaps = 22/242 (9%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A ++   C+ + L L  IG AM   +    EW +A+N L +   +FPGM + I P LKFS
Sbjct: 336 ARIVAAKCHGLPLALNVIGKAMVC-KETVQEWRHAINVLNSPGHKFPGMEERILPILKFS 394

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YD L +   + CFL+C+LF ++  I KD+ I+ WI EG +  +        QG  II  L
Sbjct: 395 YDSLKNGEIKLCFLYCSLFPEDFEIEKDKLIEYWICEGYINPNRYEDGGTNQGYDIIGLL 454

Query: 127 IRVCLLEE--------MHDMLRDLALWIASQDKGNK---ILASKPENGKL--------II 167
           +R  LL E        MHD++R++ALWI S D GN+   I      + +L        I+
Sbjct: 455 VRAHLLIECELTDKVKMHDVIREMALWINS-DFGNQQETICVKSGAHVRLIPNDISWEIV 513

Query: 168 DQQSVTWNKAVRVSLSPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK 227
            Q S+   +  +++ S P+CP L TLL+ Y  +  +   FF  MP L VL+ S N  L +
Sbjct: 514 RQMSLISTQVEKIACS-PNCPNLSTLLLPYNKLVDISVGFFLFMPKLVVLDLSTNWSLIE 572

Query: 228 LP 229
           LP
Sbjct: 573 LP 574

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/240 (35%), Positives = 122/240 (50%), Gaps = 22/240 (9%)

Query: 13  ACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSS 72
           AC  + L L  IG  MA  +    EW+ AV+    Y A F  + + I P LK+SYD+L S
Sbjct: 346 ACCGLPLALNVIGETMAC-KKTTQEWDRAVDVSTTYAANFGAVKERILPILKYSYDNLES 404

Query: 73  ETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLL 132
           E+ + CFL+C+LF ++ LI K+  ID WI EG +    N   A  +G  I+ +L+   LL
Sbjct: 405 ESVKTCFLYCSLFPEDDLIEKERLIDYWICEGFIDGDENKKGAVGEGYEILGTLVCASLL 464

Query: 133 EE-----------MHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVRVS 181
            E           MHD++R++ALWIAS  + +K         +L    +   W    R+S
Sbjct: 465 VEGGKFNNKSYVKMHDVVREMALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMS 524

Query: 182 L---------SPPSCPRLLTLLVR-YASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231
           L           P CP+L TL ++    +  +   FF+SMP L VL+ S N +L+ LP Q
Sbjct: 525 LVNNRIKEIHGSPECPKLTTLFLQDNRHLVNISGEFFRSMPRLVVLDLSWNVNLSGLPDQ 584

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  124 bits (312), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/255 (35%), Positives = 128/255 (50%), Gaps = 32/255 (12%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A ++   C  + L L  IG  M S +    EW NA++ L +Y AEF GM D I P LK+S
Sbjct: 337 ARIVAKKCCGLPLALNVIGETM-SCKRTIQEWRNAIHVLNSYAAEFIGMEDKILPLLKYS 395

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YD+L  E  +   L+CAL+ ++  IRK++ I+ WI E ++  S  I  A  +G  II SL
Sbjct: 396 YDNLKGEHVKSSLLYCALYPEDAKIRKEDLIEHWICEEIIDGSEGIEKAEDKGYDIIGSL 455

Query: 127 IRVCLLEE-----------MHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSV-TW 174
           +R  LL E           MHD++R++ALWIAS+  G +  A     G  + +   V  W
Sbjct: 456 VRASLLMECVDLKGKSSVIMHDVVREMALWIASE-LGIQKEAFIVRAGVGVREIPKVKNW 514

Query: 175 NKAVRVSL---------SPPSCPRLLTLLV---------RYASMKGLPEWFFQSMPALRV 216
           N   R+SL             C  L TLL+         R++ +K +   FF  MP L V
Sbjct: 515 NVVRRMSLMGNKIHHLVGSYECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAV 574

Query: 217 LEWSRNGDLTKLPMQ 231
           L+ S N  L +LP +
Sbjct: 575 LDLSHNQSLFELPEE 589

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  124 bits (312), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 115/237 (48%), Gaps = 20/237 (8%)

Query: 14  CNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSE 73
           C  + L L  IG  MA  R    EW +AV+ L +Y AEF GM D I   LK+SYD+L+ +
Sbjct: 345 CRGLPLALNVIGETMAGKRA-VQEWHHAVDVLTSYAAEFSGMDDHILLILKYSYDNLNDK 403

Query: 74  THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLE 133
             R CF +CAL+ ++  I+K   ID WI EG +  +     A  QG  I+ +L+R CLL 
Sbjct: 404 HVRSCFQYCALYPEDYSIKKYRLIDYWICEGFIDGNIGKERAVNQGYEILGTLVRACLLS 463

Query: 134 E---------MHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVRVSL-- 182
           E         MHD++R++ALW  S    NK          L    +   W    R+SL  
Sbjct: 464 EEGKNKLEVKMHDVVREMALWTLSDLGKNKERCIVQAGSGLRKVPKVEDWGAVRRLSLMN 523

Query: 183 -------SPPSCPRLLTLLVRY-ASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231
                    P CP L TL ++   S+  +   FF+ M  L VL+ S N  L  LP Q
Sbjct: 524 NGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHMRKLVVLDLSENHQLDGLPEQ 580

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score =  124 bits (311), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 120/237 (50%), Gaps = 23/237 (9%)

Query: 14  CNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSE 73
           C  + L L  IG  MAS +    EWE+A++ L    AEF  MG+ I P LK+SYD L  E
Sbjct: 233 CRGLPLALSVIGETMAS-KTMVQEWEHAIDVLTRSAAEFSNMGNKILPILKYSYDSLGDE 291

Query: 74  THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLE 133
             + CFL+CALF ++  I  ++ ID WI EG + +   I  AR +G  ++ +L    LL 
Sbjct: 292 HIKSCFLYCALFPEDDEIYNEKLIDYWICEGFIGEDQVIKRARNKGYEMLGTLTLANLLT 351

Query: 134 E-------MHDMLRDLALWIAS---QDKGNKILASKPENGKLIIDQQSVTWNKAVRVSL- 182
           +       MHD++R++ALWIAS   + K N ++ ++     L    ++  W    R+SL 
Sbjct: 352 KVGTEHVVMHDVVREMALWIASDFGKQKENFVVRARV---GLHERPEAKDWGAVRRMSLM 408

Query: 183 --------SPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231
                       C  L TL ++   +K L   F + M  L VL+ S N D  KLP Q
Sbjct: 409 DNHIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQ 465

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score =  123 bits (309), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/236 (38%), Positives = 124/236 (52%), Gaps = 16/236 (6%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A V+   C  + L L  IG AM+  R    EW   ++ L +  AEFP M D   P LK  
Sbjct: 329 ARVVASTCRGLPLALNLIGEAMSGKRT-VREWRYTIHVLASSTAEFPDMEDGTLPILKSI 387

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YD++S E  R CFL+CALF +N  I K++ ++ WI EG+L    +   A +QG  II  L
Sbjct: 388 YDNMSDEIIRLCFLYCALFPENLDIGKEDLVNYWICEGILA-KEDREEAEIQGYEIICDL 446

Query: 127 IRVCLLEE--------MHDMLRDLALWIASQD----KGNKILASKPENGKLIIDQQSVTW 174
           +R+ LL E        MH M+R++ALWIAS+      G +I      N   +I + SVT 
Sbjct: 447 VRMRLLMESGNGNCVKMHGMVREMALWIASEHFVVVGGERIHQMLNVNDWRMIRRMSVTS 506

Query: 175 NKAVRVSLSPPSCPRLLTLLVRY-ASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229
            +   +S S P C  L TL+ R    +K +   FFQ M  L VL+ S N +L +LP
Sbjct: 507 TQIQNISDS-PQCSELTTLVFRRNRHLKWISGAFFQWMTGLVVLDLSFNRELAELP 561

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
147838868	882	hypothetical protein VITISV_011431 [Viti	0.965	0.253	0.440	2e-47
225442539	882	PREDICTED: probable disease resistance p	0.965	0.253	0.440	2e-47
359482561	1639	PREDICTED: probable disease resistance p	0.965	0.136	0.432	3e-47
297743174	1123	unnamed protein product [Vitis vinifera]	0.965	0.199	0.432	8e-47
147782477	1377	hypothetical protein VITISV_002420 [Viti	0.965	0.162	0.444	2e-46
359482559	883	PREDICTED: disease resistance protein RP	0.956	0.251	0.444	3e-46
147859094	881	hypothetical protein VITISV_018933 [Viti	0.956	0.251	0.432	1e-44
297743218	927	unnamed protein product [Vitis vinifera]	0.948	0.237	0.426	2e-43
225442515	904	PREDICTED: probable disease resistance p	0.948	0.243	0.426	2e-43
255574524	881	Disease resistance protein RFL1, putativ	0.926	0.244	0.418	2e-42

>gi|147838868|emb|CAN70333.1| hypothetical protein VITISV_011431 [Vitis vinifera]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 149/243 (61%), Gaps = 19/243 (7%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A ++   C  + L LI IG AMAS R  P EWE A+  LK+YPA+F GMGD +FP LKFS
Sbjct: 334 AKIVVEECKGLPLALIVIGRAMAS-RKTPQEWEQAIQVLKSYPAKFSGMGDQVFPILKFS 392

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YDHL ++T + CFL+C+LF ++  I  ++ IDLWIGEG +    +I  AR QGE II SL
Sbjct: 393 YDHLDNDTTKSCFLYCSLFPEDHKIWIEDLIDLWIGEGFMDKFVDIYEARNQGEEIIRSL 452

Query: 127 IRVCLLE--------EMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAV 178
              CLLE        +MHD++RD+ALW++      K  +   ++G+LI   ++V W +A 
Sbjct: 453 KLACLLEGGVSEHTCKMHDVIRDMALWLSCDYGEEKHKSFVLDHGQLIEAYETVKWKEAQ 512

Query: 179 RVSL----------SPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228
           R+SL            P    L TL++R ++MK LP  FFQ MP +RVL+ S N +L +L
Sbjct: 513 RISLWYSNINEGLSLSPCFLNLRTLILRNSNMKSLPIGFFQFMPVIRVLDLSYNANLVEL 572

Query: 229 PMQ 231
           P++
Sbjct: 573 PLE 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442539|ref|XP_002278938.1| PREDICTED: probable disease resistance protein At5g63020 [Vitis vinifera]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 107/243 (44%), Positives = 149/243 (61%), Gaps = 19/243 (7%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A ++   C  + L LI IG AMAS R  P EWE A+  LK+YPA+F GMGD +FP LKFS
Sbjct: 334 AKIVVEECKGLPLALIVIGRAMAS-RKTPQEWEQAIQVLKSYPAKFSGMGDQVFPILKFS 392

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YDHL ++T + CFL+C+LF ++  I  ++ IDLWIGEG +    +I  AR QGE II SL
Sbjct: 393 YDHLDNDTTKSCFLYCSLFPEDHKIWIEDLIDLWIGEGFMDKFVDIYEARNQGEEIIRSL 452

Query: 127 IRVCLLE--------EMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAV 178
              CLLE        +MHD++RD+ALW++      K  +   ++G+LI   ++V W +A 
Sbjct: 453 KLACLLEGGVSEHTCKMHDVIRDMALWLSCDYGEEKHKSFVLDHGQLIEAYETVKWKEAQ 512

Query: 179 RVSL----------SPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228
           R+SL            P    L TL++R ++MK LP  FFQ MP +RVL+ S N +L +L
Sbjct: 513 RISLWYSNINEGLSLSPCFLNLRTLILRNSNMKSLPIGFFQFMPVIRVLDLSYNANLVEL 572

Query: 229 PMQ 231
           P++
Sbjct: 573 PLE 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482561|ref|XP_002277853.2| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  194 bits (493), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/243 (43%), Positives = 151/243 (62%), Gaps = 19/243 (7%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A ++   C  + L L+ IG +MAS R  P EWE A+  LK+YPAEF GMGD +FP LKFS
Sbjct: 338 AKIVVEECEGLPLALVVIGRSMAS-RKTPREWEQALQVLKSYPAEFSGMGDHVFPILKFS 396

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YDHL + T + CFL+C++F ++ +I  +E IDLWIGEG +    ++  AR QG+ II SL
Sbjct: 397 YDHLDNHTIKSCFLYCSIFPEDSIIENEELIDLWIGEGFVNKFADVHKARNQGDGIIRSL 456

Query: 127 IRVCLLE--------EMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAV 178
              CLLE        +MHD++RD+ALW++ +    K  +   ++ +LI   + V W +A 
Sbjct: 457 KLACLLEGDVSESTCKMHDVIRDMALWLSCESGEEKHKSFVLKHVELIEAYEIVKWKEAQ 516

Query: 179 RVSLSPPS-------CPRLL---TLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228
           R+SL   +        PR L   TL++R ++MK LP  FFQSMP +RVL+ S N +L +L
Sbjct: 517 RISLWHSNINEGLSLSPRFLNLQTLILRNSNMKSLPIGFFQSMPVIRVLDLSDNRNLVEL 576

Query: 229 PMQ 231
           P++
Sbjct: 577 PLE 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743174|emb|CBI36041.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (489), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/243 (43%), Positives = 151/243 (62%), Gaps = 19/243 (7%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A ++   C  + L L+ IG +MAS R  P EWE A+  LK+YPAEF GMGD +FP LKFS
Sbjct: 601 AKIVVEECEGLPLALVVIGRSMAS-RKTPREWEQALQVLKSYPAEFSGMGDHVFPILKFS 659

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YDHL + T + CFL+C++F ++ +I  +E IDLWIGEG +    ++  AR QG+ II SL
Sbjct: 660 YDHLDNHTIKSCFLYCSIFPEDSIIENEELIDLWIGEGFVNKFADVHKARNQGDGIIRSL 719

Query: 127 IRVCLLE--------EMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAV 178
              CLLE        +MHD++RD+ALW++ +    K  +   ++ +LI   + V W +A 
Sbjct: 720 KLACLLEGDVSESTCKMHDVIRDMALWLSCESGEEKHKSFVLKHVELIEAYEIVKWKEAQ 779

Query: 179 RVSLSPPS-------CPRLL---TLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228
           R+SL   +        PR L   TL++R ++MK LP  FFQSMP +RVL+ S N +L +L
Sbjct: 780 RISLWHSNINEGLSLSPRFLNLQTLILRNSNMKSLPIGFFQSMPVIRVLDLSDNRNLVEL 839

Query: 229 PMQ 231
           P++
Sbjct: 840 PLE 842

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782477|emb|CAN75117.1| hypothetical protein VITISV_002420 [Vitis vinifera]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 149/243 (61%), Gaps = 19/243 (7%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A ++   C  + L LI IG +MAS++  P EWE A+  LK+YPAEF GMGD +FP LKFS
Sbjct: 337 AKIVVEECKGLPLALIVIGRSMASMKT-PREWEQALQMLKSYPAEFSGMGDHVFPILKFS 395

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YDHL +   + CFL+C+LF ++  I  +E IDLWIGEG L    +I  AR QG+ II SL
Sbjct: 396 YDHLYNPIIKSCFLYCSLFPEDHEIWNEELIDLWIGEGFLNKFADIHKARNQGDEIIRSL 455

Query: 127 IRVCLLE--------EMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAV 178
              CLLE        +MHD++RD+ALW++ +       +   E+ +LI   + V W +A 
Sbjct: 456 KLACLLEGDVSEYTCKMHDVIRDMALWLSCESGEENHKSFVLEHVELIEAYEIVKWKEAQ 515

Query: 179 RVSLSPPSC-------PRLL---TLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL 228
           R+SL   +        PR L   TL++R + MK LP  FFQSMP +RVL+ S NG+L +L
Sbjct: 516 RISLWHSNINEGLSLSPRFLNLQTLILRDSKMKSLPIGFFQSMPVIRVLDLSYNGNLVEL 575

Query: 229 PMQ 231
           P++
Sbjct: 576 PLE 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482559|ref|XP_002277748.2| PREDICTED: disease resistance protein RPS5-like [Vitis vinifera]

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 109/245 (44%), Positives = 149/245 (60%), Gaps = 23/245 (9%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A ++   C  + L LI IG +MAS R  P EWE A+  LK+YPAEF GMGD +FP LKFS
Sbjct: 335 AKIVIEECKGLPLALIVIGRSMAS-RKTPREWEQAIQVLKSYPAEFSGMGDQVFPILKFS 393

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YDHL ++T + CFL+C+ F ++  I  +  IDLWIGEG L    +I  A  QG+ II SL
Sbjct: 394 YDHLDNDTIKSCFLYCSTFPEDHEILNEGLIDLWIGEGFLNKFDDIHKAHNQGDEIIRSL 453

Query: 127 IRVCLLE--------EMHDMLRDLALWIASQ--DKGNKILASKPENGKLIIDQQSVTWNK 176
              CLLE        +MHD++RD+ALW++     K +KI     ++ +LI   + V W +
Sbjct: 454 KLACLLEGDVSEDTCKMHDVIRDMALWLSCDYGKKRHKIFVL--DHVQLIEAYEIVKWKE 511

Query: 177 AVRVSL----------SPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT 226
           A R+SL            P  P L TL++  ++MK LP  FFQSMPA+RVL+ SRN +L 
Sbjct: 512 AQRISLWDSNINKGFSLSPCFPNLQTLILINSNMKSLPIGFFQSMPAIRVLDLSRNEELV 571

Query: 227 KLPMQ 231
           +LP++
Sbjct: 572 ELPLE 576

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859094|emb|CAN80410.1| hypothetical protein VITISV_018933 [Vitis vinifera]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 106/245 (43%), Positives = 147/245 (60%), Gaps = 23/245 (9%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A ++   C  + L LI IG +MAS R  P EWE A+  LK+YPAEF GMGD +FP LKF+
Sbjct: 370 AKIVVEECKGLPLALIVIGRSMAS-RKTPREWEQAIQVLKSYPAEFSGMGDQVFPILKFN 428

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YDHL ++T + CFL+C+ F ++  I  +  IDLWIGEG L    +I  A  QG+ II SL
Sbjct: 429 YDHLDNDTIKSCFLYCSTFPEDHEILNESLIDLWIGEGFLNKFDDIHKAHNQGDEIIRSL 488

Query: 127 IRVCLLE--------EMHDMLRDLALWIASQ--DKGNKILASKPENGKLIIDQQSVTWNK 176
              CLLE        +MHD++RD+ALW++     K +KI     ++ +LI   + V W +
Sbjct: 489 KLACLLEGDVSEDTCKMHDVIRDMALWLSCDYGKKRHKIFVL--DHVQLIEAYEIVKWKE 546

Query: 177 AVRVSL----------SPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT 226
             R+SL            P  P L TL++  ++MK LP  FFQSM A+RVL+ SRN +L 
Sbjct: 547 TQRISLWDSNINKGLSLSPCFPNLQTLILINSNMKSLPIGFFQSMSAIRVLDLSRNEELV 606

Query: 227 KLPMQ 231
           +LP++
Sbjct: 607 ELPLE 611

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743218|emb|CBI36085.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 143/239 (59%), Gaps = 19/239 (7%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A +    C  + L ++TIG AMA  +  P EWE A+  LK YP++F GMGD +FP LKFS
Sbjct: 335 AEIAAKECQGLPLAIVTIGRAMAD-KKTPQEWERAIQMLKTYPSKFSGMGDHVFPVLKFS 393

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YD+L ++T R CFL+ A+F ++  I  ++ I LWIGEG L    +I  A  QG  II+ L
Sbjct: 394 YDNLPNDTIRTCFLYLAIFPEDHEIWDEDLIFLWIGEGFLDGFASIDEALNQGHHIIEHL 453

Query: 127 IRVCLLE-------EMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVR 179
             VCL E       +MHD++RD+ALW+AS+ +GNK +    E   + + Q S  W +A R
Sbjct: 454 KTVCLFENGLFDRVKMHDVIRDMALWLASEYRGNKNIILVEEVDTVEVYQVS-KWKEAHR 512

Query: 180 VSLS---------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229
           + L+         PPS P LLTL+VR   ++  P  FF  MP ++VL+ S +G +TKLP
Sbjct: 513 LHLATSSLEELTIPPSFPNLLTLIVRSRGLETFPSGFFHFMPVIKVLDLSNSG-ITKLP 570

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442515|ref|XP_002278439.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 143/239 (59%), Gaps = 19/239 (7%)

Query: 7   ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
           A +    C  + L ++TIG AMA  +  P EWE A+  LK YP++F GMGD +FP LKFS
Sbjct: 335 AEIAAKECQGLPLAIVTIGRAMAD-KKTPQEWERAIQMLKTYPSKFSGMGDHVFPVLKFS 393

Query: 67  YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
           YD+L ++T R CFL+ A+F ++  I  ++ I LWIGEG L    +I  A  QG  II+ L
Sbjct: 394 YDNLPNDTIRTCFLYLAIFPEDHEIWDEDLIFLWIGEGFLDGFASIDEALNQGHHIIEHL 453

Query: 127 IRVCLLE-------EMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVR 179
             VCL E       +MHD++RD+ALW+AS+ +GNK +    E   + + Q S  W +A R
Sbjct: 454 KTVCLFENGLFDRVKMHDVIRDMALWLASEYRGNKNIILVEEVDTVEVYQVS-KWKEAHR 512

Query: 180 VSLS---------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229
           + L+         PPS P LLTL+VR   ++  P  FF  MP ++VL+ S +G +TKLP
Sbjct: 513 LHLATSSLEELTIPPSFPNLLTLIVRSRGLETFPSGFFHFMPVIKVLDLSNSG-ITKLP 570

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574524|ref|XP_002528173.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532385|gb|EEF34180.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 142/234 (60%), Gaps = 19/234 (8%)

Query: 14  CNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSE 73
           C  + L LIT+G  MAS + N  EW +A+ +L++YP++FPGM   +FP LKFSYD LS +
Sbjct: 353 CKGLPLALITVGKVMAS-KKNADEWRHAITQLQSYPSQFPGMAGDVFPKLKFSYDSLSGD 411

Query: 74  THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLE 133
            +RKCFL+C+LF + Q IRK E ++LWIGE  ++   +I  AR +G  II +L R  LLE
Sbjct: 412 VYRKCFLYCSLFPEEQKIRKRELVNLWIGESFIQKFADIFQARYKGADIIGNLERAYLLE 471

Query: 134 --------EMHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVTWNKAVRVSLSPP 185
                   EMHD++RD+ALW++ ++  N+      +N  +I       W  A R+SL  P
Sbjct: 472 SGVSDDCVEMHDVIRDMALWLSCEEGKNEENVLVSQNADVIPALDLEKWANAERISLWGP 531

Query: 186 S--------CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231
           +          R  TL++R  ++K LP  FFQ   +L+VL+ S N DLTKLP++
Sbjct: 532 TFENLSEIRSSRCKTLIIRETNLKELPGEFFQK--SLQVLDLSHNEDLTKLPVE 583

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.913	0.238	0.403	4.5e-31
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.607	0.159	0.385	1.5e-30
TAIR|locus:2170902	862	AT5G43740 [Arabidopsis thalian	0.629	0.169	0.384	2.3e-28
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.594	0.154	0.421	4e-28
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.599	0.143	0.397	8.8e-28
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.612	0.160	0.376	2.8e-27
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.948	0.232	0.381	3.8e-27
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.931	0.283	0.353	1.3e-25
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.814	0.207	0.350	4.8e-25
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.931	0.240	0.348	7.7e-25

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 4.5e-31, P = 4.5e-31
 Identities = 94/233 (40%), Positives = 131/233 (56%)

Query:    14 CNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSE 73
             C  + L L  IG  MA  +    EW +A++ L +  AEF GM D I P LK+SYD+L SE
Sbjct:   346 CRGLPLALNVIGETMA-YKRTVQEWRSAIDVLTSSAAEFSGMEDEILPILKYSYDNLKSE 404

Query:    74 THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLE 133
               + CF +CALF ++  I K++ +D WIGEG +    N   A  QG  II  L+R CLL 
Sbjct:   405 QLKLCFQYCALFPEDHNIEKNDLVDYWIGEGFI--DRNKGKAENQGYEIIGILVRSCLLM 462

Query:   134 E-------MHDMLRDLALWIAS---QDKGNKI----LASK--PENGKLIIDQQ-SVTWNK 176
             E       MHD++R++ALWIAS   + K N I    L S+  PE  K  + ++ S+ +N 
Sbjct:   463 EENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNN 522

Query:   177 AVRVSLSPPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229
                +  +P S P+L+TLL+R   +  +   FF+ MP L VL+ S N DL  LP
Sbjct:   523 IESIRDAPES-PQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLP 574

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
 Identities = 59/153 (38%), Positives = 85/153 (55%)

Query:    13 ACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSS 72
             AC  + L L  IG  MA  +    EW+ AV+    Y A F  + + I P LK+SYD+L S
Sbjct:   346 ACCGLPLALNVIGETMAC-KKTTQEWDRAVDVSTTYAANFGAVKERILPILKYSYDNLES 404

Query:    73 ETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLL 132
             E+ + CFL+C+LF ++ LI K+  ID WI EG +    N   A  +G  I+ +L+   LL
Sbjct:   405 ESVKTCFLYCSLFPEDDLIEKERLIDYWICEGFIDGDENKKGAVGEGYEILGTLVCASLL 464

Query:   133 EE-----------MHDMLRDLALWIASQDKGNK 154
              E           MHD++R++ALWIAS  + +K
Sbjct:   465 VEGGKFNNKSYVKMHDVVREMALWIASDLRKHK 497

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2170902 AT5G43740 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
 Identities = 60/156 (38%), Positives = 86/156 (55%)

Query:     7 ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
             A ++   C+ + L L  IG AM S +    EW +A+N L +   EFPGM + I P LKFS
Sbjct:   335 ARIVAAKCHGLPLALNVIGKAM-SCKETIQEWSHAINVLNSAGHEFPGMEERILPILKFS 393

Query:    67 YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
             YD L +   + CFL+C+LF ++  I K++ I+ WI EG +  +         G  II  L
Sbjct:   394 YDSLKNGEIKLCFLYCSLFPEDSEIPKEKWIEYWICEGFINPNRYEDGGTNHGYDIIGLL 453

Query:   127 IRVCLLEE--------MHDMLRDLALWIASQDKGNK 154
             +R  LL E        MHD++R++ALWI S D G +
Sbjct:   454 VRAHLLIECELTDNVKMHDVIREMALWINS-DFGKQ 488

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
 Identities = 64/152 (42%), Positives = 85/152 (55%)

Query:    14 CNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSE 73
             C  + L L  IG  MA  R    EW +AV+ L +Y AEF GM D I   LK+SYD+L+ +
Sbjct:   345 CRGLPLALNVIGETMAGKRA-VQEWHHAVDVLTSYAAEFSGMDDHILLILKYSYDNLNDK 403

Query:    74 THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARL--QGESIIDSLIRVCL 131
               R CF +CAL+ ++  I+K   ID WI EG + D  NI   R   QG  I+ +L+R CL
Sbjct:   404 HVRSCFQYCALYPEDYSIKKYRLIDYWICEGFI-DG-NIGKERAVNQGYEILGTLVRACL 461

Query:   132 LEE---------MHDMLRDLALWIASQDKGNK 154
             L E         MHD++R++ALW  S    NK
Sbjct:   462 LSEEGKNKLEVKMHDVVREMALWTLSDLGKNK 493

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 8.8e-28, Sum P(2) = 8.8e-28
 Identities = 60/151 (39%), Positives = 83/151 (54%)

Query:    14 CNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSE 73
             C  + L L  IG  MAS +    EWE+A++ L    AEF  M + I P LK+SYD L  E
Sbjct:   345 CRGLPLALSCIGETMAS-KTMVQEWEHAIDVLTRSAAEFSDMQNKILPILKYSYDSLEDE 403

Query:    74 THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLE 133
               + CFL+CALF ++  I     I+ WI EG + +   I  AR +G  ++ +LIR  LL 
Sbjct:   404 HIKSCFLYCALFPEDDKIDTKTLINKWICEGFIGEDQVIKRARNKGYEMLGTLIRANLLT 463

Query:   134 E----------MHDMLRDLALWIASQDKGNK 154
                        MHD++R++ALWIAS D G +
Sbjct:   464 NDRGFVKWHVVMHDVVREMALWIAS-DFGKQ 493

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
 Identities = 58/154 (37%), Positives = 86/154 (55%)

Query:     7 ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
             A ++   C  + L L  IG  M S +    EW +A++ L +Y AEF GM D + P LK+S
Sbjct:   337 ARIVAKKCCGLPLALNVIGETM-SCKRTIQEWRHAIHVLNSYAAEFIGMEDKVLPLLKYS 395

Query:    67 YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
             YD+L  E  +   L+CAL+ ++  I K++ I+ WI E ++  S  I  A  +G  II  L
Sbjct:   396 YDNLKGEQVKSSLLYCALYPEDAKILKEDLIEHWICEEIIDGSEGIEKAEDKGYEIIGCL 455

Query:   127 IRVCLLEE-----------MHDMLRDLALWIASQ 149
             +R  LL E           MHD++R++ALWIAS+
Sbjct:   456 VRASLLMEWDDGDGRRAVCMHDVVREMALWIASE 489

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 3.8e-27, P = 3.8e-27
 Identities = 90/236 (38%), Positives = 123/236 (52%)

Query:     7 ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
             A V+   C  + L L  IG AM+  R    EW   ++ L +  AEFP M D   P LK  
Sbjct:   329 ARVVASTCRGLPLALNLIGEAMSGKRT-VREWRYTIHVLASSTAEFPDMEDGTLPILKSI 387

Query:    67 YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
             YD++S E  R CFL+CALF +N  I K++ ++ WI EG+L        A +QG  II  L
Sbjct:   388 YDNMSDEIIRLCFLYCALFPENLDIGKEDLVNYWICEGILAKEDR-EEAEIQGYEIICDL 446

Query:   127 IRVCLLEE--------MHDMLRDLALWIASQD----KGNKILASKPENGKLIIDQQSVTW 174
             +R+ LL E        MH M+R++ALWIAS+      G +I      N   +I + SVT 
Sbjct:   447 VRMRLLMESGNGNCVKMHGMVREMALWIASEHFVVVGGERIHQMLNVNDWRMIRRMSVTS 506

Query:   175 NKAVRVSLSPPSCPRLLTLLVRY-ASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP 229
              +   +S SP  C  L TL+ R    +K +   FFQ M  L VL+ S N +L +LP
Sbjct:   507 TQIQNISDSP-QCSELTTLVFRRNRHLKWISGAFFQWMTGLVVLDLSFNRELAELP 561

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 83/235 (35%), Positives = 117/235 (49%)

Query:    14 CNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSE 73
             C  + L L  IG  MAS +    EWE+A++ L    AEF  MG+ I P LK+SYD L  E
Sbjct:   233 CRGLPLALSVIGETMAS-KTMVQEWEHAIDVLTRSAAEFSNMGNKILPILKYSYDSLGDE 291

Query:    74 THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLE 133
               + CFL+CALF ++  I  ++ ID WI EG + +   I  AR +G  ++ +L    LL 
Sbjct:   292 HIKSCFLYCALFPEDDEIYNEKLIDYWICEGFIGEDQVIKRARNKGYEMLGTLTLANLLT 351

Query:   134 E-------MHDMLRDLALWIASQ-DKGNKILASKPENGKLIIDQQSVTWNKAVRVSLSP- 184
             +       MHD++R++ALWIAS   K  +    +   G L    ++  W    R+SL   
Sbjct:   352 KVGTEHVVMHDVVREMALWIASDFGKQKENFVVRARVG-LHERPEAKDWGAVRRMSLMDN 410

Query:   185 --------PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231
                       C  L TL ++   +K L   F + M  L VL+ S N D  KLP Q
Sbjct:   411 HIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSYNRDFNKLPEQ 465

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 4.8e-25, P = 4.8e-25
 Identities = 74/211 (35%), Positives = 112/211 (53%)

Query:     7 ASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS 66
             A ++   C  + L LIT+G AMA  R    EW +A   L  +PAE  GM + +F  LKFS
Sbjct:   338 AEIIVSKCGGLPLALITLGGAMAH-RETEEEWIHASEVLTRFPAEMKGM-NYVFALLKFS 395

Query:    67 YDHLSSETHRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSL 126
             YD+L S+  R CFL+CALF +   I  ++ ++ W+GEG L  SH +     +G  +I  L
Sbjct:   396 YDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTI-YKGYFLIGDL 454

Query:   127 IRVCLLE--------EMHDMLRDLALWIASQDKGNK-ILASKPENGKLIIDQQSVTWNKA 177
                CLLE        +MH+++R  ALW+AS+    K ++  +P  G     +    W +A
Sbjct:   455 KAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKAE-NWRQA 513

Query:   178 VRVSL------SPPS---CPRLLTLLVRYAS 199
             + +SL      + P    CP+L TL+++  S
Sbjct:   514 LVISLLDNRIQTLPEKLICPKLTTLMLQQNS 544

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 7.7e-25, P = 7.7e-25
 Identities = 82/235 (34%), Positives = 119/235 (50%)

Query:    14 CNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSE 73
             C  + L L  IG  M+S +    EWE+A++      AEF  M + I P LK+SYD L  E
Sbjct:   344 CRGLPLALNVIGETMSS-KTMVQEWEHAIHVFNTSAAEFSDMQNKILPILKYSYDSLGDE 402

Query:    74 THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLE 133
               + CFL+CALF ++  I  ++ ID WI EG + +   I  AR +G +++ +L R  LL 
Sbjct:   403 HIKSCFLYCALFPEDGEIYNEKLIDYWICEGFIGEDQVIKRARNKGYAMLGTLTRANLLT 462

Query:   134 E-------MHDMLRDLALWIASQDKGNKILASKPENGKLIIDQQSVT-WNKAVRVSLSP- 184
             +       MHD++R++ALWIAS D G +      + G  + +   V  W    ++SL   
Sbjct:   463 KVGTYYCVMHDVVREMALWIAS-DFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDN 521

Query:   185 --------PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ 231
                       C  L TL ++   +K LP  F + M  L VL+ S N D  KLP Q
Sbjct:   522 DIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQ 576

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034346001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (882 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-16

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 76.2 bits (188), Expect = 1e-16
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 14  CNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSE 73
           C  + L L  +G  +A  ++   EWE+ + +L N  A   G+ + +   L  SYD+L   
Sbjct: 191 CKGLPLALKVLGGLLAF-KSTVQEWEHVLEQLNNELAGRDGL-NEVLSILSLSYDNLPMH 248

Query: 74  THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSH 110
             R CFL+ ALF ++  IRK++ I LWI EG +  S 
Sbjct: 249 LKR-CFLYLALFPEDYNIRKEQLIKLWIAEGFVIPSD 284

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.95
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.79
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.16
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.11
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	97.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.02
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.84
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.57
PLN03150	623	hypothetical protein; Provisional	96.56
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.4
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.28
PLN03150	623	hypothetical protein; Provisional	96.27
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.25
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.77
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	95.69
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	95.64
smart00370	26	LRR Leucine-rich repeats, outliers.	95.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.44
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.39
PRK04841	903	transcriptional regulator MalT; Provisional	94.63
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.52
smart00370	26	LRR Leucine-rich repeats, outliers.	94.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	94.01
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.62
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.57
PRK15386	426	type III secretion protein GogB; Provisional	93.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	92.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	92.87
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	91.78
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	90.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.69
PRK15386	426	type III secretion protein GogB; Provisional	90.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	90.53
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	89.55
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	89.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	89.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	89.22
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.11
KOG4237	498	consensus Extracellular matrix protein slit, conta	88.93
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	88.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	88.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	87.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	87.26
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.85
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	84.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	84.3
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	84.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	83.99
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	83.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	83.1
KOG3864	221	consensus Uncharacterized conserved protein [Funct	82.47
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.03

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-46  Score=346.99  Aligned_cols=226  Identities=34%  Similarity=0.536  Sum_probs=200.3

Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcC-CCCCCCCCcchhhHHHHhHhcCCchhHHHHHHH
Q 047834            3 QSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNY-PAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLF   81 (232)
Q Consensus         3 ~~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~-~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~   81 (232)
                      +.++|++|+++|+|+|||+.++|+.|+. +++..+|+++.+.+.+. ..+.+++.+.++++|++||+.||++ +|.||+|
T Consensus       341 i~~lak~v~~kC~GLPLAl~viG~~ma~-K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLy  418 (889)
T KOG4658|consen  341 IEELAKEVAEKCGGLPLALNVLGGLLAC-KKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLY  418 (889)
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHhcC-CCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHh
Confidence            4789999999999999999999999999 78889999999999887 5556667778999999999999977 8999999


Q ss_pred             hhhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh-----------hHHHHHHHHHHHhccc
Q 047834           82 CALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE-----------MHDMLRDLALWIASQD  150 (232)
Q Consensus        82 ~a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~-----------mhdli~~~~~~i~~~e  150 (232)
                      ||+||+||.|+++.|+..|+|+||+.+..+...++++|+.|+++||+++|+..           |||+||+||.+++.+.
T Consensus       419 calFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~  498 (889)
T KOG4658|consen  419 CALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDF  498 (889)
T ss_pred             hccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccc
Confidence            99999999999999999999999999977778899999999999999999975           9999999999999976


Q ss_pred             cCCccceecCCCCceeeccccccccccceeEec-----------------------------------CCCCCCccEEEe
Q 047834          151 KGNKILASKPENGKLIIDQQSVTWNKAVRVSLS-----------------------------------PPSCPRLLTLLV  195 (232)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsl~-----------------------------------~~~l~~Lr~L~l  195 (232)
                      +...+...+..+......++...|..+|+++++                                   +..++.||+|||
T Consensus       499 ~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDL  578 (889)
T KOG4658|consen  499 GKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDL  578 (889)
T ss_pred             cccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEEC
Confidence            654444555555555557788888888888887                                   234789999999


Q ss_pred             ccC-CCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          196 RYA-SMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       196 ~~~-~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      ++| .+.+||++ |++|.+||||||++| .++.||.+|
T Consensus       579 s~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~LP~~l  614 (889)
T KOG4658|consen  579 SGNSSLSKLPSS-IGELVHLRYLDLSDT-GISHLPSGL  614 (889)
T ss_pred             CCCCccCcCChH-HhhhhhhhcccccCC-CccccchHH
Confidence            988 88999999 999999999999999 999999875

>PLN03210 Resistant to P

Probab=99.95  E-value=3e-27  Score=229.58  Aligned_cols=126  Identities=21%  Similarity=0.324  Sum_probs=105.8

Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHHHh
Q 047834            3 QSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFC   82 (232)
Q Consensus         3 ~~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~   82 (232)
                      +.+++++|+++|+|+||||+++|+.|++  ++.++|+.++++|+.....      +|.++|++||++|+++..|.||+++
T Consensus       374 ~~~l~~~iv~~c~GLPLAl~vlgs~L~~--k~~~~W~~~l~~L~~~~~~------~I~~~L~~SYd~L~~~~~k~~Fl~i  445 (1153)
T PLN03210        374 FMELASEVALRAGNLPLGLNVLGSYLRG--RDKEDWMDMLPRLRNGLDG------KIEKTLRVSYDGLNNKKDKAIFRHI  445 (1153)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHcC--CCHHHHHHHHHHHHhCccH------HHHHHHHHhhhccCccchhhhhhee
Confidence            5678999999999999999999999999  7899999999999875443      7999999999999864249999999


Q ss_pred             hhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhccc
Q 047834           83 ALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE------MHDMLRDLALWIASQD  150 (232)
Q Consensus        83 a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~------mhdli~~~~~~i~~~e  150 (232)
                      |+||.+..++   .+..|.+.+....           +..++.|++++|++.      |||++|+||+++++++
T Consensus       446 a~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~  505 (1153)
T PLN03210        446 ACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQ  505 (1153)
T ss_pred             hhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhh
Confidence            9999985443   4566777654433           134899999999975      9999999999998765

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.79  E-value=3.2e-20  Score=155.27  Aligned_cols=103  Identities=32%  Similarity=0.601  Sum_probs=88.6

Q ss_pred             hHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHHHhh
Q 047834            4 SYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFCA   83 (232)
Q Consensus         4 ~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~a   83 (232)
                      .+++++|+++|+|+||||+++|++|+. +.+..+|+++++.+........+....+..++.+||+.||++ +|+||+|||
T Consensus       182 ~~~~~~i~~~c~glPLal~~~a~~l~~-~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~  259 (287)
T PF00931_consen  182 EDLAKEIVEKCGGLPLALKLIASYLRS-KSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDE-LRRCFLYLS  259 (287)
T ss_dssp             CTHHHHHHHHTTT-HHHHHHHHHHHHH-HHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGG
T ss_pred             ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccceechhcCCcc-HHHHHhhCc
Confidence            467899999999999999999999977 348899999999988776544444457999999999999998 799999999


Q ss_pred             hcCCCccccHHHHHHHHHHcCCCCC
Q 047834           84 LFLKNQLIRKDEHIDLWIGEGLLRD  108 (232)
Q Consensus        84 ~fp~~~~~~~~~li~~w~a~g~~~~  108 (232)
                      +||+++.|+++.++++|+++|++..
T Consensus       260 ~f~~~~~i~~~~li~lW~~e~~i~~  284 (287)
T PF00931_consen  260 IFPEGVPIPRERLIRLWVAEGFISS  284 (287)
T ss_dssp             GSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred             CCCCCceECHHHHHHHHHHCCCCcc
Confidence            9999999999999999999999987

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.67  E-value=1.8e-08  Score=59.93  Aligned_cols=41  Identities=22%  Similarity=0.354  Sum_probs=36.6

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ++|++|++++|+++.+|.. +++|++|++|+++++ .|+++|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSS-CCSBEGG
T ss_pred             CcceEEEccCCCCcccCch-HhCCCCCCEEEecCC-CCCCCcC
Confidence            5899999999999999999 999999999999999 9998874

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.15  E-value=7.6e-07  Score=56.75  Aligned_cols=39  Identities=31%  Similarity=0.447  Sum_probs=26.8

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRN  222 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~  222 (232)
                      +..+++|++|++++|.++.+|+..|.+|++|++|+++++
T Consensus        21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            345677777777777777766654677777777777776

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.93  E-value=8.1e-06  Score=51.91  Aligned_cols=43  Identities=30%  Similarity=0.522  Sum_probs=39.8

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ++|++|++++|++..+|...|.++++|++||++++ +++.+|+.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~   43 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPD   43 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETT
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHH
Confidence            58999999999999999877999999999999999 99998864

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.16  E-value=0.0001  Score=36.79  Aligned_cols=19  Identities=37%  Similarity=0.504  Sum_probs=14.3

Q ss_pred             CccEEEccCCCCCCCCCCCC
Q 047834          213 ALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       213 ~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +||+|||++| +++++|++|
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSS-EESEEGTTT
T ss_pred             CccEEECCCC-cCEeCChhh
Confidence            4778888888 887777764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.11  E-value=0.00026  Score=61.08  Aligned_cols=47  Identities=28%  Similarity=0.367  Sum_probs=44.0

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      ...+++|.+|||+++++++.|++ ++.|++|.+||+|+. .|..||.+.
T Consensus       248 ~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN-~is~Lp~sL  294 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNN-DISSLPYSL  294 (565)
T ss_pred             hcccccceeeeccccccccCchH-HHHhhhhhhhcccCC-ccccCCccc
Confidence            56889999999999999999999 999999999999999 999999763

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=97.08  E-value=0.00028  Score=32.82  Aligned_cols=17  Identities=59%  Similarity=0.905  Sum_probs=9.6

Q ss_pred             CCccEEEccCCCCCCCCC
Q 047834          212 PALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       212 ~~Lr~LdL~~~~~l~~LP  229 (232)
                      ++||+|+|++| ++++||
T Consensus         1 ~~L~~L~l~~n-~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNN-RLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCC-CCCCCc
Confidence            36777788887 677776

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.02  E-value=0.00018  Score=35.92  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=19.3

Q ss_pred             CccEEEeccCCCCCCChHhhcCC
Q 047834          189 RLLTLLVRYASMKGLPEWFFQSM  211 (232)
Q Consensus       189 ~Lr~L~l~~~~l~~lp~~~i~~L  211 (232)
                      +|++|++++|+++.+|++ |++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT-
T ss_pred             CccEEECCCCcCEeCChh-hcCC
Confidence            689999999999999999 7764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.97  E-value=0.00011  Score=56.64  Aligned_cols=43  Identities=30%  Similarity=0.418  Sum_probs=21.6

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+.+|.+|.+.++.++++|.+ |.+|+.||.|++.-. ++..+|.
T Consensus        54 ~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lpr   96 (264)
T KOG0617|consen   54 ELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPR   96 (264)
T ss_pred             HhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCcc
Confidence            344555555555555555555 555555555555444 4444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.95  E-value=0.00056  Score=65.65  Aligned_cols=45  Identities=44%  Similarity=0.681  Sum_probs=41.7

Q ss_pred             CCccEEEeccCC--CCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          188 PRLLTLLVRYAS--MKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       188 ~~Lr~L~l~~~~--l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +.|++|-+.++.  +..++..||..|+.||+|||++|.++.+||++|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I  591 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI  591 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence            369999999995  899999999999999999999999999999987

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.84  E-value=0.0012  Score=51.37  Aligned_cols=44  Identities=30%  Similarity=0.427  Sum_probs=17.8

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      +..+++|++|++++|.++.+++.+...+++|+.|++++. +|..+
T Consensus        60 l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l  103 (175)
T PF14580_consen   60 LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDL  103 (175)
T ss_dssp             ----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SC
T ss_pred             ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCCh
Confidence            455677888888888888887663346788888888877 76654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.57  E-value=0.00046  Score=65.04  Aligned_cols=48  Identities=25%  Similarity=0.331  Sum_probs=44.8

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +..+++||+|+|++|.+..+|++++.++..|+.|+|||. +++.||+.|
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tv  426 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTV  426 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHH
Confidence            567899999999999999999999999999999999999 999999754

>PLN03150 hypothetical protein; Provisional

Probab=96.56  E-value=0.0025  Score=59.34  Aligned_cols=44  Identities=30%  Similarity=0.514  Sum_probs=27.6

Q ss_pred             CCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCC
Q 047834          185 PSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~  230 (232)
                      ..+++|++|+|++|++. .+|++ +++|.+|++|||+++ ++. .+|+
T Consensus       463 ~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N-~l~g~iP~  508 (623)
T PLN03150        463 GSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGN-SLSGRVPA  508 (623)
T ss_pred             hCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCC-cccccCCh
Confidence            34566666666666665 56666 666777777777666 554 5554

>PLN03210 Resistant to P

Probab=96.40  E-value=0.0077  Score=59.98  Aligned_cols=43  Identities=14%  Similarity=0.407  Sum_probs=37.7

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      .+|++|+|++|.++.+|.+ ++++++|++|+|++|.+++.+|..
T Consensus       846 ~nL~~L~Ls~n~i~~iP~s-i~~l~~L~~L~L~~C~~L~~l~~~  888 (1153)
T PLN03210        846 TNISDLNLSRTGIEEVPWW-IEKFSNLSFLDMNGCNNLQRVSLN  888 (1153)
T ss_pred             cccCEeECCCCCCccChHH-HhcCCCCCEEECCCCCCcCccCcc
Confidence            4788888888888899999 899999999999999889888864

syringae 6; Provisional

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.28  E-value=0.0026  Score=29.49  Aligned_cols=17  Identities=35%  Similarity=0.526  Sum_probs=11.9

Q ss_pred             CCccEEEeccCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLP  204 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp  204 (232)
                      ++|++|++++|+++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            58999999999999887

...

>PLN03150 hypothetical protein; Provisional

Probab=96.27  E-value=0.0036  Score=58.27  Aligned_cols=46  Identities=22%  Similarity=0.350  Sum_probs=40.5

Q ss_pred             CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCCC
Q 047834          184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~s  231 (232)
                      +..+++|++|+|++|.+. .+|.+ +++|.+|++|||+++ ++. .+|++
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N-~lsg~iP~~  485 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYN-SFNGSIPES  485 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCC-CCCCCCchH
Confidence            456789999999999887 89999 999999999999999 887 67764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.25  E-value=0.0025  Score=55.25  Aligned_cols=44  Identities=25%  Similarity=0.331  Sum_probs=40.0

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ...+.+|.+|+|.++++..+|+. +|+|.+|+.|++.|. .+. .|.
T Consensus       501 l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gN-pfr-~Pr  544 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGN-PFR-QPR  544 (565)
T ss_pred             hhhhhhcceeccCCCchhhCChh-hccccceeEEEecCC-ccC-CCH
Confidence            45678999999999999999999 999999999999999 887 554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.17  E-value=0.00086  Score=51.70  Aligned_cols=47  Identities=28%  Similarity=0.294  Sum_probs=39.2

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +.++.+|+.|.++++++-.+|.+ +|.|..||.|.+.|. +++-||+++
T Consensus       146 vg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgn-rl~vlppel  192 (264)
T KOG0617|consen  146 VGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGN-RLTVLPPEL  192 (264)
T ss_pred             hhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccc-eeeecChhh
Confidence            56778888888888888888888 888888888888888 888888753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.77  E-value=0.009  Score=46.41  Aligned_cols=42  Identities=19%  Similarity=0.349  Sum_probs=19.4

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+.+|+.|+|++|+++.++.  +..|++|++|++++. +|+++++
T Consensus        40 ~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~   81 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISE   81 (175)
T ss_dssp             T-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CH
T ss_pred             hhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCcccc
Confidence            56899999999999999987  889999999999999 9988753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.77  E-value=0.003  Score=57.80  Aligned_cols=46  Identities=26%  Similarity=0.417  Sum_probs=36.9

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      ..+|+-+|+|++|+|+.||.+++-+|..|-+||||+. +++.||+.|
T Consensus       124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~  169 (1255)
T KOG0444|consen  124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQI  169 (1255)
T ss_pred             hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHH
Confidence            3467778888888888888888888888888888888 888888753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=95.69  E-value=0.013  Score=57.09  Aligned_cols=45  Identities=20%  Similarity=0.277  Sum_probs=29.6

Q ss_pred             CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCC
Q 047834          184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~  230 (232)
                      +..+++|++|++++|.+. .+|.+ ++++++|++|||++| ++. .+|+
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~  206 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN-QLVGQIPR  206 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC-CCcCcCCh
Confidence            345667777777777553 56776 777777777777777 544 4554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=95.64  E-value=0.015  Score=56.72  Aligned_cols=45  Identities=18%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             CCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCCC
Q 047834          185 PSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~s  231 (232)
                      ..+++|++|+|++|.+. .+|.+ ++++.+|++|+|+++ ++. .+|.+
T Consensus       185 ~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~  231 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYN-NLSGEIPYE  231 (968)
T ss_pred             hhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCC-ccCCcCChh
Confidence            45677777777777654 56777 777777888887777 554 55543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.53  E-value=0.0088  Score=30.81  Aligned_cols=18  Identities=50%  Similarity=0.779  Sum_probs=10.7

Q ss_pred             CCccEEEccCCCCCCCCCC
Q 047834          212 PALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       212 ~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+|++|+|+++ .|+.+|+
T Consensus         2 ~~L~~L~L~~N-~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNN-QLSSLPP   19 (26)
T ss_pred             CCCCEEECCCC-cCCcCCH
Confidence            45566666666 6666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.53  E-value=0.0088  Score=30.81  Aligned_cols=18  Identities=50%  Similarity=0.779  Sum_probs=10.7

Q ss_pred             CCccEEEccCCCCCCCCCC
Q 047834          212 PALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       212 ~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+|++|+|+++ .|+.+|+
T Consensus         2 ~~L~~L~L~~N-~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNN-QLSSLPP   19 (26)
T ss_pred             CCCCEEECCCC-cCCcCCH
Confidence            45566666666 6666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.44  E-value=0.036  Score=52.64  Aligned_cols=39  Identities=23%  Similarity=0.392  Sum_probs=19.3

Q ss_pred             CccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +|+.|+|++|++..+|.+ +.  .+|++|+++++ +++.+|++
T Consensus       242 ~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N-~L~~LP~~  280 (754)
T PRK15370        242 TIQEMELSINRITELPER-LP--SALQSLDLFHN-KISCLPEN  280 (754)
T ss_pred             cccEEECcCCccCcCChh-Hh--CCCCEEECcCC-ccCccccc
Confidence            344444444444444444 22  34556666655 55555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.39  E-value=0.0062  Score=55.79  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=42.8

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+..|.+|+|+.|.+++.|.. +..-+++-+|+||+. +|+++|.+
T Consensus        99 iF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~  144 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNS  144 (1255)
T ss_pred             hcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCch
Confidence            56778999999999999999999 999999999999999 99999986

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.63  E-value=0.23  Score=48.07  Aligned_cols=116  Identities=16%  Similarity=0.209  Sum_probs=74.0

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHh-HhcCCchhHHHHHHHhh
Q 047834            5 YSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFS-YDHLSSETHRKCFLFCA   83 (232)
Q Consensus         5 ~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~s-y~~L~~~~~k~cfl~~a   83 (232)
                      +...++.+.|+|.|+++..++..+..  .... .......+...      ....+...|.-. ++.||++ .+..++..|
T Consensus       206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~--~~~~-~~~~~~~~~~~------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a  275 (903)
T PRK04841        206 AESSRLCDDVEGWATALQLIALSARQ--NNSS-LHDSARRLAGI------NASHLSDYLVEEVLDNVDLE-TRHFLLRCS  275 (903)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhh--CCCc-hhhhhHhhcCC------CchhHHHHHHHHHHhcCCHH-HHHHHHHhc
Confidence            34578999999999999999988866  2211 11111111110      011355555444 8899999 699999999


Q ss_pred             hcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh----------hHHHHHHHHHHHh
Q 047834           84 LFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE----------MHDMLRDLALWIA  147 (232)
Q Consensus        84 ~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~----------mhdli~~~~~~i~  147 (232)
                      +++.   ++.+-+ .     .+.+.        +.+...+++|.+++++..          .|++++++.+...
T Consensus       276 ~~~~---~~~~l~-~-----~l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        276 VLRS---MNDALI-V-----RVTGE--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             cccc---CCHHHH-H-----HHcCC--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence            9872   443322 1     11111        123578999999998641          8999999988764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.52  E-value=0.037  Score=28.40  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             CCCccEEEeccCCCCCCChHhh
Q 047834          187 CPRLLTLLVRYASMKGLPEWFF  208 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i  208 (232)
                      +.+|++|+|.+|+++.+|...|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4789999999999999999844

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.52  E-value=0.037  Score=28.40  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             CCCccEEEeccCCCCCCChHhh
Q 047834          187 CPRLLTLLVRYASMKGLPEWFF  208 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i  208 (232)
                      +.+|++|+|.+|+++.+|...|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4789999999999999999844

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.46  E-value=0.024  Score=53.39  Aligned_cols=50  Identities=18%  Similarity=0.231  Sum_probs=37.5

Q ss_pred             ccccceeEec------------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834          174 WNKAVRVSLS------------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       174 ~~~~~~lsl~------------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      .+.++++.+.            ..+++||++||+++++++.+..  |++|++|++|.+++. .++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G--IS~LknLq~L~mrnL-e~e  208 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG--ISRLKNLQVLSMRNL-EFE  208 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH--HhccccHHHHhccCC-CCC
Confidence            4566666666            5688999999999999988843  777777777777666 444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=94.01  E-value=0.11  Score=49.43  Aligned_cols=18  Identities=39%  Similarity=0.475  Sum_probs=11.4

Q ss_pred             CCccEEEeccCCCCCCCh
Q 047834          188 PRLLTLLVRYASMKGLPE  205 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~  205 (232)
                      ++|++|++++|.++.+|.
T Consensus       242 ~~Lk~LdLs~N~LtsLP~  259 (788)
T PRK15387        242 PELRTLEVSGNQLTSLPV  259 (788)
T ss_pred             CCCcEEEecCCccCcccC
Confidence            566666666666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.62  E-value=0.1  Score=30.64  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             CCCCCCccEEEeccCCCCCCCh
Q 047834          184 PPSCPRLLTLLVRYASMKGLPE  205 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~  205 (232)
                      +..+++|++|++++|.++.+|.
T Consensus        20 l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             GTTCTTSSEEEETSSCCSBEGG
T ss_pred             HhCCCCCCEEEecCCCCCCCcC
Confidence            4688999999999999998876

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.57  E-value=0.077  Score=50.47  Aligned_cols=40  Identities=23%  Similarity=0.378  Sum_probs=31.2

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ++|++|++++|+++.+|.+ +.  .+|+.|+|++| ++..+|.+
T Consensus       220 ~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~N-~L~~LP~~  259 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPAT-LP--DTIQEMELSIN-RITELPER  259 (754)
T ss_pred             cCCCEEECCCCccccCChh-hh--ccccEEECcCC-ccCcCChh
Confidence            4788888888888888887 43  46888888888 88888864

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.49  E-value=0.061  Score=47.35  Aligned_cols=18  Identities=39%  Similarity=0.442  Sum_probs=9.1

Q ss_pred             CccEEEeccC-CCCCCChH
Q 047834          189 RLLTLLVRYA-SMKGLPEW  206 (232)
Q Consensus       189 ~Lr~L~l~~~-~l~~lp~~  206 (232)
                      +|++|.+.+| .+..+|++
T Consensus        95 nLe~L~Ls~Cs~L~sLP~s  113 (426)
T PRK15386         95 GLEKLTVCHCPEISGLPES  113 (426)
T ss_pred             hhhheEccCcccccccccc
Confidence            4555555555 44455543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=92.95  E-value=0.026  Score=42.11  Aligned_cols=43  Identities=33%  Similarity=0.426  Sum_probs=27.4

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +++-+.+|++.+|.+..+|.+ +..|+.||.|+++.. .+...|.
T Consensus        75 kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~  117 (177)
T KOG4579|consen   75 KFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPR  117 (177)
T ss_pred             ccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchH
Confidence            345566666666666666666 666666666666666 6655553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=92.87  E-value=0.036  Score=52.80  Aligned_cols=46  Identities=20%  Similarity=0.311  Sum_probs=41.5

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      .+++.+|.+|.|.++.+..+|.+ +..+++|++||+|+. .+...|.-
T Consensus        87 ~~~~~~l~~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N-~f~~~Pl~  132 (1081)
T KOG0618|consen   87 CSNMRNLQYLNLKNNRLQSLPAS-ISELKNLQYLDLSFN-HFGPIPLV  132 (1081)
T ss_pred             hhhhhcchhheeccchhhcCchh-HHhhhcccccccchh-ccCCCchh
Confidence            56788999999999999999999 999999999999999 88888863

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=91.78  E-value=0.053  Score=47.34  Aligned_cols=40  Identities=33%  Similarity=0.503  Sum_probs=22.5

Q ss_pred             CccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +|+.|+++++.+..+|.. ++.+++|+.|+++++ ++..+|.
T Consensus       141 nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~  180 (394)
T COG4886         141 NLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPK  180 (394)
T ss_pred             hcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhh
Confidence            555555555555555544 555555555555555 5555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=90.84  E-value=0.062  Score=40.16  Aligned_cols=47  Identities=17%  Similarity=0.316  Sum_probs=42.0

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +....+|...+|++|.++++|..|..+++-+..|+|++. .|..+|++
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE   95 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE   95 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH
Confidence            345678889999999999999998888889999999999 99999975

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.69  E-value=0.091  Score=45.85  Aligned_cols=46  Identities=24%  Similarity=0.463  Sum_probs=41.8

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ...+++|+.|++.+|++..+|.. .+.+.+|+.|++++. .+..+|..
T Consensus       159 ~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N-~i~~l~~~  204 (394)
T COG4886         159 LRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGN-KISDLPPE  204 (394)
T ss_pred             hhccccccccccCCchhhhhhhh-hhhhhhhhheeccCC-ccccCchh
Confidence            45789999999999999999998 779999999999999 99999975

>PRK15386 type III secretion protein GogB; Provisional

Probab=90.64  E-value=0.3  Score=43.12  Aligned_cols=41  Identities=17%  Similarity=0.273  Sum_probs=35.5

Q ss_pred             CccEEEeccC-CCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          189 RLLTLLVRYA-SMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       189 ~Lr~L~l~~~-~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +|++|.+++| .++.+|+. +.  .+|++|++++|.++.+||+++
T Consensus        73 sLtsL~Lsnc~nLtsLP~~-LP--~nLe~L~Ls~Cs~L~sLP~sL  114 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGS-IP--EGLEKLTVCHCPEISGLPESV  114 (426)
T ss_pred             CCcEEEccCCCCcccCCch-hh--hhhhheEccCccccccccccc
Confidence            6999999998 78899987 43  689999999998999999874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=90.53  E-value=0.14  Score=46.67  Aligned_cols=43  Identities=30%  Similarity=0.340  Sum_probs=37.3

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      -.|+.||++.|++..||-+ |.+|++||||-|... .+.+=|.+|
T Consensus       211 LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenN-PLqSPPAqI  253 (722)
T KOG0532|consen  211 LPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENN-PLQSPPAQI  253 (722)
T ss_pred             CceeeeecccCceeecchh-hhhhhhheeeeeccC-CCCCChHHH
Confidence            4688999999999999999 999999999999988 887766543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=89.55  E-value=0.2  Score=47.88  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=26.7

Q ss_pred             CccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834          189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      +|++|++++|+++.||++ ++++.+|++|+|+++ .+.
T Consensus       423 ~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N-~Ls  458 (788)
T PRK15387        423 GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGN-PLS  458 (788)
T ss_pred             hhhhhhhccCcccccChH-HhhccCCCeEECCCC-CCC
Confidence            566777777777777777 777788888888777 664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=89.49  E-value=0.12  Score=43.57  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=17.6

Q ss_pred             CccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834          189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      |.++|.|.+|.++.+..  +++|.+|.+||+++. +|++
T Consensus       353 NIKtL~La~N~iE~LSG--L~KLYSLvnLDl~~N-~Ie~  388 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETLSG--LRKLYSLVNLDLSSN-QIEE  388 (490)
T ss_pred             CEeeeehhhhhHhhhhh--hHhhhhheecccccc-chhh
Confidence            33444444444444444  455555556666555 5544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=89.40  E-value=0.096  Score=47.58  Aligned_cols=40  Identities=33%  Similarity=0.522  Sum_probs=24.4

Q ss_pred             CccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          189 RLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       189 ~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      -|++|.+.+|+++.+|+. ||.+..|..||.+.| .+.+||+
T Consensus       144 pLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slps  183 (722)
T KOG0532|consen  144 PLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPS  183 (722)
T ss_pred             cceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchH
Confidence            356666666666666666 666666666666666 6666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=89.22  E-value=0.16  Score=44.83  Aligned_cols=41  Identities=17%  Similarity=0.280  Sum_probs=22.0

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      .+..|+.|.+.+|.+..++.  +..+.+|++|+++++ .+..++
T Consensus       138 ~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n-~i~~ie  178 (414)
T KOG0531|consen  138 TLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYN-RIVDIE  178 (414)
T ss_pred             hccchhhheeccCcchhccC--CccchhhhcccCCcc-hhhhhh
Confidence            34445555555555555555  445555555555555 554443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.11  E-value=0.27  Score=25.35  Aligned_cols=17  Identities=47%  Similarity=0.620  Sum_probs=12.7

Q ss_pred             CccEEEccCCCCCCCCCC
Q 047834          213 ALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       213 ~Lr~LdL~~~~~l~~LP~  230 (232)
                      +|++|++++. ++++||+
T Consensus         3 ~L~~L~vs~N-~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNN-QLTSLPE   19 (26)
T ss_pred             ccceeecCCC-ccccCcc
Confidence            5777777777 7777775

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=88.93  E-value=0.29  Score=42.73  Aligned_cols=47  Identities=21%  Similarity=0.190  Sum_probs=25.6

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ++.+++||.|+|+.|+|+.|-+.=|..|..|-.|-+-|.-+|+.||+
T Consensus        87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k  133 (498)
T KOG4237|consen   87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK  133 (498)
T ss_pred             ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence            44556666666666666654333355566654444444226666664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=88.69  E-value=0.25  Score=43.65  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=36.9

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ..+++|++|+++++.|..+..  +..|..|+.|+++++ .|..++.
T Consensus       115 ~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~~  157 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDISG  157 (414)
T ss_pred             hhhhcchheeccccccccccc--hhhccchhhheeccC-cchhccC
Confidence            468899999999999999988  788999999999999 8877653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=88.65  E-value=0.3  Score=46.19  Aligned_cols=42  Identities=24%  Similarity=0.426  Sum_probs=33.8

Q ss_pred             CCCCCccEEEeccCCCC--CCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMK--GLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~--~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      ..+|+|+.|.+.|-.+.  ++-.- ..++++|+.||+|+| +++.|
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~l-c~sFpNL~sLDIS~T-nI~nl  188 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQL-CASFPNLRSLDISGT-NISNL  188 (699)
T ss_pred             hhCcccceEEecCceecchhHHHH-hhccCccceeecCCC-CccCc
Confidence            46799999999987542  33444 778999999999999 99876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=87.27  E-value=0.45  Score=39.81  Aligned_cols=16  Identities=19%  Similarity=0.077  Sum_probs=8.4

Q ss_pred             CCCCccEEEeccCCCC
Q 047834          186 SCPRLLTLLVRYASMK  201 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~  201 (232)
                      .+++|++|++++|.+.
T Consensus       219 ~~~~L~~L~ls~n~l~  234 (319)
T cd00116         219 SLKSLEVLNLGDNNLT  234 (319)
T ss_pred             ccCCCCEEecCCCcCc
Confidence            3455555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.26  E-value=0.46  Score=38.98  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CCCCCCccEEEeccCCC---CCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASM---KGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l---~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      .-.+++|++|.+++|.+   +.++.  ..++.+|..||+..| ..+++
T Consensus        87 ~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~-~~~~l  131 (260)
T KOG2739|consen   87 AEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNC-SVTNL  131 (260)
T ss_pred             hhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccC-Ccccc
Confidence            34568899999988844   46666  677888888898888 55543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.85  E-value=0.52  Score=24.06  Aligned_cols=15  Identities=40%  Similarity=0.576  Sum_probs=11.5

Q ss_pred             CCccEEEccCCCCCC
Q 047834          212 PALRVLEWSRNGDLT  226 (232)
Q Consensus       212 ~~Lr~LdL~~~~~l~  226 (232)
                      ++|+.|+|++|.+++
T Consensus         2 ~~L~~L~l~~C~~it   16 (26)
T smart00367        2 PNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCEeCCCCCCCcC
Confidence            578888888886664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.81  E-value=0.67  Score=38.05  Aligned_cols=42  Identities=29%  Similarity=0.419  Sum_probs=30.5

Q ss_pred             CCCCCCccEEEeccC--CCC-CCChHhhcCCCCccEEEccCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYA--SMK-GLPEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~--~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      ++.+++|++|.++.|  ++. .++-. ..++++|++|++++. +|+-
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~  105 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKD  105 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-cccc
Confidence            567788888888887  443 45555 566688888888888 6653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=84.30  E-value=0.5  Score=39.97  Aligned_cols=34  Identities=24%  Similarity=0.547  Sum_probs=19.2

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRN  222 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~  222 (232)
                      .|.+|+|+++.|++..+..  +..|++|+.||||+.
T Consensus       306 ~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN  339 (490)
T ss_pred             ccceeEEeccccceeeehh--hhhcccceEeecccc
Confidence            3555666666555554444  455566666666655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=84.21  E-value=0.66  Score=42.69  Aligned_cols=43  Identities=23%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      +..++.||.|.|.||+++.+|.--|..|.+|+.|||-+. .|.+
T Consensus       388 f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaS  430 (873)
T KOG4194|consen  388 FNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIAS  430 (873)
T ss_pred             hccchhhhheeecCceeeecchhhhccCcccceecCCCC-ccee
Confidence            455777888888888888888766777888888888776 5543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=83.99  E-value=0.45  Score=40.74  Aligned_cols=41  Identities=29%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             CCCCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      +..++||++|+|++|-++     .+-.. +..+++||.|++++| .++
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~Laka-L~s~~~L~El~l~dc-ll~  254 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSWPHLRELNLGDC-LLE  254 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHH-hcccchheeeccccc-ccc
Confidence            567788888888888442     45555 666788888888888 665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=83.77  E-value=0.91  Score=41.80  Aligned_cols=42  Identities=31%  Similarity=0.450  Sum_probs=34.6

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      +..+.+|.+|.|+.|++..||.-.|++|++|+.|||... .|+
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~ir  234 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIR  234 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-cee
Confidence            556778899999999999999876788999999998876 554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=83.10  E-value=0.89  Score=38.03  Aligned_cols=40  Identities=25%  Similarity=0.253  Sum_probs=29.2

Q ss_pred             CCCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      ..+.+|++|++++|++.     .++.. +..+.+|++|++++| .+.
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~  206 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNN-GLT  206 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCC-ccC
Confidence            34567888888888765     34555 566678999999888 664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.47  E-value=0.36  Score=38.25  Aligned_cols=37  Identities=16%  Similarity=0.031  Sum_probs=21.2

Q ss_pred             CCCCccEEEeccC-CCCCCChHhhcCCCCccEEEccCC
Q 047834          186 SCPRLLTLLVRYA-SMKGLPEWFFQSMPALRVLEWSRN  222 (232)
Q Consensus       186 ~l~~Lr~L~l~~~-~l~~lp~~~i~~L~~Lr~LdL~~~  222 (232)
                      -.++|+.|++++| +|++---.-+.++++||.|.+++.
T Consensus       149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence            3466666666666 555433333566666666666654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.03  E-value=0.7  Score=22.94  Aligned_cols=13  Identities=38%  Similarity=0.710  Sum_probs=7.8

Q ss_pred             CCccEEEccCCCCC
Q 047834          212 PALRVLEWSRNGDL  225 (232)
Q Consensus       212 ~~Lr~LdL~~~~~l  225 (232)
                      ++|++|||++| .|
T Consensus         2 ~~L~~L~l~~n-~i   14 (24)
T PF13516_consen    2 PNLETLDLSNN-QI   14 (24)
T ss_dssp             TT-SEEE-TSS-BE
T ss_pred             CCCCEEEccCC-cC
Confidence            57778888877 54

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-17
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 80.4 bits (198), Expect = 1e-17
 Identities = 14/147 (9%), Positives = 35/147 (23%), Gaps = 21/147 (14%)

Query: 19  LTLITIGSAMASIRNNPAEWENAVNELKNYPA-----EFPGMGDLIFPCLKFSYDHLSSE 73
            TL+    +         +     N+L++          P     +   L+   + LS E
Sbjct: 331 ATLMMFFKSCEPKTFE--KMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDE 388

Query: 74  THRKCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLE 133
             R    F  +      I       +   +    +   +     +    +  L +   L 
Sbjct: 389 -DRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDD---EVADRLKRLSKRGALL 444

Query: 134 E----------MHDMLRDLALWIASQD 150
                      +  ++      +    
Sbjct: 445 SGKRMPVLTFKIDHIIHMFLKHVVDAQ 471

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 18/138 (13%), Positives = 40/138 (28%), Gaps = 25/138 (18%)

Query: 19  LTLITIGSAMASIRNNPAEWENAVN--ELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHR 76
           L +  IG+ +    N    +   +   + K          + +   +  S + L  +  +
Sbjct: 322 LVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDI-K 380

Query: 77  KCFLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE-- 134
             +   ++  K+  +       LW  E              + E I+   +   LL    
Sbjct: 381 DYYTDLSILQKDVKVPTKVLCILWDMET------------EEVEDILQEFVNKSLLFCDR 428

Query: 135 --------MHDMLRDLAL 144
                   +HD+  D   
Sbjct: 429 NGKSFRYYLHDLQVDFLT 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 3e-12
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 44/144 (30%)

Query: 13  ACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSS 72
              +    L  I     SIR+  A W+N     K+       +  +I    + S + L  
Sbjct: 322 VLTTNPRRLSIIA---ESIRDGLATWDN----WKHV--NCDKLTTII----ESSLNVLEP 368

Query: 73  ETHRKCFLFCALFLKNQLIRKDEHID------LWIGEGLLRDSHNIAVARLQGESIIDSL 126
             +RK F   ++F          HI       +W  + +  D             +++ L
Sbjct: 369 AEYRKMFDRLSVF------PPSAHIPTILLSLIW-FDVIKSDV----------MVVVNKL 411

Query: 127 IRVCLLEE--------MHDMLRDL 142
            +  L+E+        +  +  +L
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLEL 435

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.87
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.77
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.65
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.94
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.82
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.77
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.7
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.59
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.59
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.58
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.54
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.53
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.53
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.53
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.52
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.5
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.5
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.48
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.46
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.44
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.4
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.24
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.2
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.1
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.1
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.02
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.02
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.02
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.99
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	96.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	96.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	96.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.95
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	96.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.93
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	96.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	96.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	96.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	96.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	96.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	96.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	96.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	96.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	96.74
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	96.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	96.74
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.73
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	96.64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	96.64
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	96.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	96.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	96.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	96.59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	96.58
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	96.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.52
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	96.52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	96.49
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	96.49
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	96.43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	96.4
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.38
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	96.36
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	96.24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.22
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	96.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.1
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	96.08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	95.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	95.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	95.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	95.51
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	94.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	94.53
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	94.31
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	94.17
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	94.06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	93.73
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	93.55
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	93.35
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	91.97
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	91.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	91.47
2fna_A	357	Conserved hypothetical protein; structural genomic	90.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	90.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	90.39
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	90.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.3
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	89.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	87.07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	86.75
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	86.28
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	85.97
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	85.65
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	84.3
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	83.33
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	82.4
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	81.17

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.87  E-value=2.2e-23  Score=187.99  Aligned_cols=136  Identities=11%  Similarity=0.057  Sum_probs=104.2

Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHH--
Q 047834            3 QSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFL--   80 (232)
Q Consensus         3 ~~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl--   80 (232)
                      +.+++++|+++|+|+||||+++|+.|+.  ++ +.|.   +.+.+..+...  ...+.++|.+||++||++ +|.||+  
T Consensus       315 ~~~~~~~I~~~c~GlPLAl~~~g~~l~~--~~-w~~~---~~l~~~l~~~~--~~~i~~~l~~Sy~~L~~~-lk~~f~~L  385 (549)
T 2a5y_B          315 EEDVLNKTIELSSGNPATLMMFFKSCEP--KT-FEKM---AQLNNKLESRG--LVGVECITPYSYKSLAMA-LQRCVEVL  385 (549)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTCCS--SS-HHHH---HHHHHHHHHHC--SSTTCCCSSSSSSSHHHH-HHHHHHTS
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHhcc--ch-HHHH---HHhHHHhhccc--HHHHHHHHhcccccccHH-HHHHHhcc
Confidence            4568999999999999999999999987  43 3333   33333222111  225888999999999999 799999  


Q ss_pred             ---------HhhhcCCCccccHHHHHHHHHHc--CCCCCCcchHHHHHHHHHHHHHHHHcccchh----------hHHHH
Q 047834           81 ---------FCALFLKNQLIRKDEHIDLWIGE--GLLRDSHNIAVARLQGESIIDSLIRVCLLEE----------MHDML  139 (232)
Q Consensus        81 ---------~~a~fp~~~~~~~~~li~~w~a~--g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~----------mhdli  139 (232)
                               |||+||+++.|+    +++|+|+  ||+.........++.++ +|++|+++||++.          |||+|
T Consensus       386 s~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv  460 (549)
T 2a5y_B          386 SDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHII  460 (549)
T ss_dssp             CHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHH
T ss_pred             chhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHH
Confidence                     999999999999    8999999  99987442344567777 9999999999974          99999


Q ss_pred             HHHHHHHhccccC
Q 047834          140 RDLALWIASQDKG  152 (232)
Q Consensus       140 ~~~~~~i~~~e~~  152 (232)
                      |++|+.++.+++.
T Consensus       461 ~~~a~~~~~~~~~  473 (549)
T 2a5y_B          461 HMFLKHVVDAQTI  473 (549)
T ss_dssp             HHHHHTTSCTHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.77  E-value=1.1e-18  Score=169.30  Aligned_cols=131  Identities=16%  Similarity=0.190  Sum_probs=112.6

Q ss_pred             hHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCC-----CCCcchhhHHHHhHhcCCchhHHHH
Q 047834            4 SYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFP-----GMGDLIFPCLKFSYDHLSSETHRKC   78 (232)
Q Consensus         4 ~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~-----~~~~~i~~~l~~sy~~L~~~~~k~c   78 (232)
                      .+++++|+++|+|+||||+++|++|+.  ++ ..|+..++++....+..-     .....+..+|.+||+.||++ .|.|
T Consensus       307 ~~~~~~i~~~~~glPLal~~~~~~l~~--~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~  382 (1249)
T 3sfz_A          307 PAEAHSIIKECKGSPLVVSLIGALLRD--FP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDY  382 (1249)
T ss_dssp             CTHHHHHHHHTTTCHHHHHHHHHHHHH--SS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHH
T ss_pred             cHHHHHHHHHhCCCHHHHHHHHHHhhc--Ch-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHH
Confidence            467899999999999999999999998  33 579999999977654321     11135899999999999999 6999


Q ss_pred             HHHhhhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh----------hHHHHHHHHHHHhc
Q 047834           79 FLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE----------MHDMLRDLALWIAS  148 (232)
Q Consensus        79 fl~~a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~----------mhdli~~~~~~i~~  148 (232)
                      |+|||+||+++.|+++.++.+|.++            ++.++.++++|+++||++.          ||+++|++++....
T Consensus       383 ~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~  450 (1249)
T 3sfz_A          383 YTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNR  450 (1249)
T ss_dssp             HHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTG
T ss_pred             HHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhh
Confidence            9999999999999999999999654            4667899999999999985          99999999999877


Q ss_pred             cc
Q 047834          149 QD  150 (232)
Q Consensus       149 ~e  150 (232)
                      ++
T Consensus       451 ~~  452 (1249)
T 3sfz_A          451 SQ  452 (1249)
T ss_dssp             GG
T ss_pred             HH
Confidence            65

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.65  E-value=6.6e-16  Score=140.02  Aligned_cols=128  Identities=18%  Similarity=0.243  Sum_probs=107.0

Q ss_pred             hHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCC-C----CCCCcchhhHHHHhHhcCCchhHHHH
Q 047834            4 SYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAE-F----PGMGDLIFPCLKFSYDHLSSETHRKC   78 (232)
Q Consensus         4 ~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~-~----~~~~~~i~~~l~~sy~~L~~~~~k~c   78 (232)
                      .+.+.+|+++|+|+||||+.+|+.|+.  . ...|+.+++.+...... .    ......+..++..||+.||++ .|.|
T Consensus       307 ~~~~~~i~~~~~G~PLal~~~a~~l~~--~-~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~  382 (591)
T 1z6t_A          307 PEQAHSIIKECKGSPLVVSLIGALLRD--F-PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDY  382 (591)
T ss_dssp             CTHHHHHHHHHTTCHHHHHHHHHHHHH--S-TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHH
T ss_pred             cHHHHHHHHHhCCCcHHHHHHHHHHhc--C-chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHH
Confidence            457889999999999999999999988  3 34799999998865432 1    112236899999999999999 5999


Q ss_pred             HHHhhhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh----------hHHHHHHHHHHHh
Q 047834           79 FLFCALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE----------MHDMLRDLALWIA  147 (232)
Q Consensus        79 fl~~a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~----------mhdli~~~~~~i~  147 (232)
                      |+++|+||+++.|+.+.+..+|.++            .+.+..++++|+++||++.          ||++++++++...
T Consensus       383 l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          383 YTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             HHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             HHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            9999999999999999999999542            2456789999999999963          9999999998873

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.65  E-value=2e-16  Score=148.96  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=91.8

Q ss_pred             hcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhH-HHHHHHhhhcCCCccc
Q 047834           13 ACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETH-RKCFLFCALFLKNQLI   91 (232)
Q Consensus        13 ~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~a~fp~~~~~   91 (232)
                      .|+|+||||+++|+.|+.+..+...|+..             ....+..+|.+||+.||++ . |.||+|||+||+++.|
T Consensus       322 ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I  387 (1221)
T 1vt4_I          322 VLTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHI  387 (1221)
T ss_dssp             HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCE
T ss_pred             HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCC
Confidence            39999999999999999832377888753             1236999999999999999 7 9999999999999999


Q ss_pred             cHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh--------hHHHHHHHH
Q 047834           92 RKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE--------MHDMLRDLA  143 (232)
Q Consensus        92 ~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~--------mhdli~~~~  143 (232)
                      +.+.++.+|+++|           ++.++.++++|+++||++.        |||++++++
T Consensus       388 ~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          388 PTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK  436 (1221)
T ss_dssp             EHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred             CHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence            9999999999887           1347889999999999974        999998855

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.04  E-value=1.3e-05  Score=60.86  Aligned_cols=47  Identities=19%  Similarity=0.303  Sum_probs=39.2

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|+|++|.+..+|...|+++.+|++|||+++ +|+.+|++
T Consensus        53 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~   99 (174)
T 2r9u_A           53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRG   99 (174)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHH
Confidence            456788899999988888888875688889999999988 88888875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.94  E-value=2.6e-05  Score=58.92  Aligned_cols=47  Identities=21%  Similarity=0.277  Sum_probs=39.4

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|+|++|.+..+|...|+++.+|++|+|+++ +|+.+|++
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~   96 (170)
T 3g39_A           50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRG   96 (170)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHH
Confidence            456788899999999888888876788999999999998 88888874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.82  E-value=3e-05  Score=61.42  Aligned_cols=43  Identities=21%  Similarity=0.338  Sum_probs=24.9

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+++|++|+|++|.+..+|.. ++++.+|++|+|+++ +++.+|+
T Consensus       110 ~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N-~l~~~~~  152 (229)
T 3e6j_A          110 RLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQN-QLKSIPH  152 (229)
T ss_dssp             TCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSS-CCCCCCT
T ss_pred             cchhhCeEeccCCcccccCcc-cccCCCCCEEECCCC-cCCccCH
Confidence            445555555555555555555 555666666666665 5555553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.80  E-value=6.5e-05  Score=56.76  Aligned_cols=46  Identities=22%  Similarity=0.385  Sum_probs=34.5

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ..+++|++|++++|.+..+|...++++++|++|+++++ .++.+|++
T Consensus        73 ~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~  118 (177)
T 2o6r_A           73 DKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG  118 (177)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             cCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHH
Confidence            45677788888887777777765677788888888887 77777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.77  E-value=3.6e-05  Score=64.54  Aligned_cols=48  Identities=21%  Similarity=0.167  Sum_probs=43.1

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +..+++|++|+|++|.+..+|...|++|.+|++|||++. +|..+|+++
T Consensus        52 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~   99 (347)
T 2ifg_A           52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKT   99 (347)
T ss_dssp             SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTT
T ss_pred             hccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHH
Confidence            567899999999999999888765899999999999999 999999753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.72  E-value=3e-05  Score=58.75  Aligned_cols=46  Identities=33%  Similarity=0.308  Sum_probs=29.6

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|++++|.+..+|..+++.+++|++|+++++ .+..+|+
T Consensus        60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~  105 (176)
T 1a9n_A           60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGD  105 (176)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGG
T ss_pred             cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchh
Confidence            445566677777776666666553466666777777766 6666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.72  E-value=6.8e-05  Score=57.83  Aligned_cols=47  Identities=28%  Similarity=0.539  Sum_probs=38.2

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|+|++|.+..+|...|+++++|++|+|+++ .|+.+|++
T Consensus        74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~  120 (193)
T 2wfh_A           74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEG  120 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTT
T ss_pred             ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChh
Confidence            456788888888888888887755888888888888888 88888864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.71  E-value=5.9e-05  Score=59.36  Aligned_cols=46  Identities=20%  Similarity=0.277  Sum_probs=32.3

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|+|++|.+..+|...|+++.+|++|+|+++ +++.+|+
T Consensus        76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~  121 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRV  121 (220)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCH
Confidence            445667777777777777777765677777777777777 7776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.71  E-value=9.6e-05  Score=58.13  Aligned_cols=46  Identities=22%  Similarity=0.192  Sum_probs=34.0

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ..+++|++|+|++|.+..++...|+++++|++|+|+++ +++.+|+.
T Consensus       101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  146 (220)
T 2v9t_B          101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKG  146 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHH
Confidence            45677888888888777775444777888888888888 77777753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.70  E-value=9.7e-05  Score=58.43  Aligned_cols=48  Identities=27%  Similarity=0.250  Sum_probs=42.0

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +..+++|++|+|++|.+..+|...++.+.+|++|+|+++ +++.+|+++
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~  131 (229)
T 3e6j_A           84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGI  131 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTG
T ss_pred             cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCccc
Confidence            356789999999999999998876789999999999999 999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.70  E-value=0.00011  Score=56.94  Aligned_cols=44  Identities=23%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+++|++|++++|.+..+|...++++++|++|+++++ .++.+|+
T Consensus        98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~  141 (208)
T 2o6s_A           98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD  141 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCH
Confidence            3445555555555555544443445555555555555 5554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.68  E-value=0.00011  Score=59.54  Aligned_cols=43  Identities=28%  Similarity=0.393  Sum_probs=21.8

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +++|++|++++|.+..+|...++++++|++|+++++ +++.+|+
T Consensus       132 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~  174 (272)
T 3rfs_A          132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPE  174 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCH
Confidence            445555555555555554443445555555555555 5554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.68  E-value=9.8e-05  Score=59.86  Aligned_cols=46  Identities=24%  Similarity=0.401  Sum_probs=32.5

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ..+++|++|++++|.+..+|...++++++|++|+++++ +++.+|++
T Consensus       106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~  151 (272)
T 3rfs_A          106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKG  151 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHH
Confidence            45667777777777777776665677777777777777 77777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.60  E-value=8.4e-05  Score=56.15  Aligned_cols=47  Identities=23%  Similarity=0.356  Sum_probs=42.3

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|++++|.+..+|...++++.+|++|+++++ +++.+|+.
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~   94 (177)
T 2o6r_A           48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNG   94 (177)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHH
Confidence            356789999999999999999886799999999999999 99999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.59  E-value=0.00017  Score=53.93  Aligned_cols=44  Identities=27%  Similarity=0.388  Sum_probs=28.3

Q ss_pred             CCCCCCccEEEeccCCCCC-CChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKG-LPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~-lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +..+++|++|++++|.+.. +|.. ++++++|++|+++++ .++.+|
T Consensus        67 ~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~  111 (168)
T 2ell_A           67 LPKLPKLKKLELSENRIFGGLDML-AEKLPNLTHLNLSGN-KLKDIS  111 (168)
T ss_dssp             CCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCEEECBSS-SCCSSG
T ss_pred             hccCCCCCEEECcCCcCchHHHHH-HhhCCCCCEEeccCC-ccCcch
Confidence            4455667777777776665 5554 566677777777776 666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.59  E-value=3.8e-05  Score=71.25  Aligned_cols=47  Identities=21%  Similarity=0.187  Sum_probs=36.8

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +..+++|++|+|++|.+..+|.+ |++|.+|++|+|+++ .|..+|++|
T Consensus       266 ~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N-~l~~lp~~~  312 (727)
T 4b8c_D          266 IKNLSNLRVLDLSHNRLTSLPAE-LGSCFQLKYFYFFDN-MVTTLPWEF  312 (727)
T ss_dssp             GGGGTTCCEEECTTSCCSSCCSS-GGGGTTCSEEECCSS-CCCCCCSST
T ss_pred             hhCCCCCCEEeCcCCcCCccChh-hcCCCCCCEEECCCC-CCCccChhh
Confidence            34567788888888888888888 788888888888888 888888754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.58  E-value=0.00012  Score=58.51  Aligned_cols=45  Identities=24%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ..+++|++|+|++|.+..+|...++++.+|++|+|+++ +++.+|+
T Consensus       104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~  148 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA  148 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCH
Confidence            34566677777776666666654566777777777777 6666665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.57  E-value=2.5e-05  Score=65.34  Aligned_cols=58  Identities=22%  Similarity=0.280  Sum_probs=45.8

Q ss_pred             ccccceeEec----------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          174 WNKAVRVSLS----------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       174 ~~~~~~lsl~----------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      ...++.+.+.          +..+++|++|+|++|.+..+|.. +++|.+|++|++++|..+..+|.++
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCccccChhH
Confidence            4455555555          34578899999999988899998 8999999999999986777888753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.56  E-value=0.00024  Score=55.82  Aligned_cols=42  Identities=14%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      .+++|++|+|++|.+..+|...|+++++|++|+|+++ +++.+
T Consensus        79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~  120 (220)
T 2v70_A           79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCV  120 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCB
T ss_pred             CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeE
Confidence            3445555555555555444443445555555555555 44444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.54  E-value=0.00019  Score=58.92  Aligned_cols=46  Identities=28%  Similarity=0.419  Sum_probs=31.7

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ..+++|++|+|++|.+..+|...+.++.+|++|+|+++ +++.+|++
T Consensus       121 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~  166 (290)
T 1p9a_G          121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG  166 (290)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT
T ss_pred             cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHH
Confidence            44567777777777777776665667777777777777 77777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.54  E-value=9.8e-05  Score=66.52  Aligned_cols=62  Identities=16%  Similarity=0.113  Sum_probs=35.6

Q ss_pred             ceeeccccccccccceeEec----------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          164 KLIIDQQSVTWNKAVRVSLS----------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       164 ~~~~~~~~~~~~~~~~lsl~----------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      .....|.......++.+.+.          +..+++|++|+|++|.++.+| + +++|++|++|||+++ +|+.+
T Consensus       452 ~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~-l~~l~~L~~L~Ls~N-~l~~~  523 (567)
T 1dce_A          452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G-VANLPRLQELLLCNN-RLQQS  523 (567)
T ss_dssp             CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSS-CCCSS
T ss_pred             CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c-cCCCCCCcEEECCCC-CCCCC
Confidence            33334444444455555554          334556666666666666666 4 666666666666666 66665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.53  E-value=0.00014  Score=59.63  Aligned_cols=59  Identities=19%  Similarity=0.261  Sum_probs=49.6

Q ss_pred             cccccceeEec-----------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          173 TWNKAVRVSLS-----------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       173 ~~~~~~~lsl~-----------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      ....++.+.+.           +..+++|++|+|++|.++.+|..++.++.+|++|+|+++ .++.+|+++
T Consensus       122 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~  191 (290)
T 1p9a_G          122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGF  191 (290)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChhh
Confidence            34456666655           356789999999999999999986789999999999999 999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.53  E-value=0.00011  Score=56.94  Aligned_cols=46  Identities=24%  Similarity=0.351  Sum_probs=36.0

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ..+++|++|++++|.+..+|...++++++|++|+++++ +++.+|++
T Consensus        73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  118 (208)
T 2o6s_A           73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDG  118 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHh
Confidence            45678888888888888887765678888888888888 88877764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.53  E-value=8e-05  Score=62.24  Aligned_cols=44  Identities=30%  Similarity=0.400  Sum_probs=25.0

Q ss_pred             CCCCccEEEeccC-CCCCCChHhhcC---------CCCccEEEccCCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYA-SMKGLPEWFFQS---------MPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       186 ~l~~Lr~L~l~~~-~l~~lp~~~i~~---------L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      .+++|++|++++| .+..+|.. ++.         +++|++|+|+++ +++.+|++
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~  201 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS  201 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG
T ss_pred             cCcCCCEEECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCC-CcCcchHh
Confidence            4456666666665 34455555 433         666666666666 66666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.53  E-value=4.5e-05  Score=70.75  Aligned_cols=47  Identities=32%  Similarity=0.377  Sum_probs=43.3

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +..+++|++|+|++|.+..+|.+ |++|.+|++|||+++ +|+.+|++|
T Consensus       243 ~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~  289 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAEL  289 (727)
T ss_dssp             GGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSG
T ss_pred             hcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhh
Confidence            44678999999999999999999 899999999999999 999999865

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.52  E-value=0.00013  Score=62.14  Aligned_cols=44  Identities=34%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+++|++|++++|.+..+|...++++++|++|+++++ .++.+|.
T Consensus        91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~  134 (390)
T 3o6n_A           91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR  134 (390)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCH
Confidence            3444444444444444443333444444444444444 4444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.52  E-value=0.00023  Score=57.57  Aligned_cols=43  Identities=33%  Similarity=0.408  Sum_probs=22.0

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +++|++|++++|.+..+|...++++++|++|+++++ .++.+|.
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~  126 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPP  126 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCH
Confidence            445555555555555555443455555555555555 5554443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.52  E-value=0.0001  Score=55.90  Aligned_cols=43  Identities=21%  Similarity=0.293  Sum_probs=39.2

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ++|++|+|++|.+..+|...|+++++|++|+|+++ +|+.+|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~   75 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTG   75 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChh
Confidence            78999999999999986544999999999999999 99999975

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.50  E-value=0.00026  Score=56.55  Aligned_cols=57  Identities=19%  Similarity=0.299  Sum_probs=44.7

Q ss_pred             ccccceeEec-----------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          174 WNKAVRVSLS-----------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       174 ~~~~~~lsl~-----------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ...++.+.+.           +..+++|++|+|++|.+..+|...++++++|++|||+++ +++.+|+.
T Consensus       106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  173 (251)
T 3m19_A          106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHG  173 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHH
Confidence            4455666555           355788999999999988888854888999999999999 88888863

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.50  E-value=5.6e-05  Score=67.88  Aligned_cols=46  Identities=22%  Similarity=0.213  Sum_probs=29.9

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|+|++|+++.+|...|++|.+|++|+|+++ +++.+|+
T Consensus        96 f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~  141 (635)
T 4g8a_A           96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLEN  141 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTT
T ss_pred             hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCCh
Confidence            345566666666666666666554666677777777766 6666664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.48  E-value=0.00031  Score=58.96  Aligned_cols=46  Identities=22%  Similarity=0.246  Sum_probs=38.6

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|++++|.+..+|...++++++|++|+++++ .++.+|.
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~  141 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGE  141 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCS
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCc
Confidence            456788888999888888888876788888999999888 8888876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.46  E-value=0.00018  Score=64.90  Aligned_cols=45  Identities=27%  Similarity=0.479  Sum_probs=25.2

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ..+++|++|+|++|.+..+|..+|+++++|++|+|+++ .+..+|+
T Consensus       120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~  164 (597)
T 3oja_B          120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIED  164 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT
T ss_pred             cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCCh
Confidence            34555556666555555555553455566666666655 5555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.44  E-value=0.00024  Score=55.78  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=37.2

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|+|++|.+..++...|+++.+|++|+|+++ +++.+|+
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  146 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAP  146 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCT
T ss_pred             hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECH
Confidence            456788999999999888874433888999999999999 8888843

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.44  E-value=0.00023  Score=52.03  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=26.5

Q ss_pred             CCCCCCccEEEeccCCCCC-CChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKG-LPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~-lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +..+++|++|++++|.+.. +|.. ++++++|++|+++++ .++.+|
T Consensus        60 ~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~ls~N-~i~~~~  104 (149)
T 2je0_A           60 LPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHLNLSGN-KIKDLS  104 (149)
T ss_dssp             CCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCEEECTTS-CCCSHH
T ss_pred             hhcCCCCCEEECCCCcccchHHHH-hhhCCCCCEEECCCC-cCCChH
Confidence            3445666666666666665 4444 555666666666666 565543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.44  E-value=0.00017  Score=55.44  Aligned_cols=43  Identities=14%  Similarity=0.265  Sum_probs=25.8

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      ..+++|++|+|++|.+..+|...|+++++|++|||+++ +++.+
T Consensus        75 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~  117 (192)
T 1w8a_A           75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCV  117 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEE
T ss_pred             CCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCee
Confidence            34556666666666666555544566666666666666 66544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.44  E-value=0.00016  Score=64.90  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=26.8

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|+|++|.++.+|+..|++|++|++|||+++ +|+.+|+
T Consensus        72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~  117 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL  117 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred             HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence            344556666666666666555443566666666666666 5665554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.40  E-value=0.00017  Score=54.30  Aligned_cols=44  Identities=23%  Similarity=0.259  Sum_probs=39.5

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      .++|++|+|++|.+..++...|++|.+|++|||+++ +|+.+|++
T Consensus        29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~   72 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAG   72 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT
T ss_pred             CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChh
Confidence            378999999999999995554999999999999999 99999975

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.39  E-value=0.00044  Score=55.81  Aligned_cols=45  Identities=27%  Similarity=0.485  Sum_probs=29.5

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ..+++|++|++++|.+..+|...++++++|++|+|+++ .++.+|+
T Consensus       130 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~  174 (270)
T 2o6q_A          130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPE  174 (270)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeCh
Confidence            34566666666666666666654566677777777776 6666664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.37  E-value=0.00015  Score=55.84  Aligned_cols=47  Identities=21%  Similarity=0.206  Sum_probs=40.7

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|+|++|.+..+|...|.+|.+|++|+|+++ +|+.+|+.
T Consensus        50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~   96 (193)
T 2wfh_A           50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPR   96 (193)
T ss_dssp             GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTT
T ss_pred             hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHH
Confidence            446789999999999999988765899999999999999 99988863

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.37  E-value=0.00019  Score=59.70  Aligned_cols=47  Identities=26%  Similarity=0.333  Sum_probs=40.7

Q ss_pred             CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +..+++|++|++++|.+..+ |.. ++++++|++|+++++ .++.+|.++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~~~  119 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKN-QLKELPEKM  119 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSS-CCSBCCSSC
T ss_pred             hccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCC-cCCccChhh
Confidence            45788999999999999887 666 899999999999999 999998753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.36  E-value=0.00014  Score=54.99  Aligned_cols=58  Identities=19%  Similarity=0.172  Sum_probs=46.9

Q ss_pred             cccccccceeEec-----------CCCCCCccEEEeccCCCCCCCh--HhhcCCCCccEEEccCCCCCCCCCC
Q 047834          171 SVTWNKAVRVSLS-----------PPSCPRLLTLLVRYASMKGLPE--WFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       171 ~~~~~~~~~lsl~-----------~~~l~~Lr~L~l~~~~l~~lp~--~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ......++.+.+.           +..+++|++|++++|.+..+|.  . ++++++|++|+++++ .+..+|.
T Consensus        60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~l~~N-~i~~~~~  130 (176)
T 1a9n_A           60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN-PVTNKKH  130 (176)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCSS-GGGGSTT
T ss_pred             cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHh-hhcCCCCCEEEecCC-CCCCcHh
Confidence            3344455555555           2457899999999999999998  6 899999999999999 9988886

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.34  E-value=0.00016  Score=63.75  Aligned_cols=45  Identities=24%  Similarity=0.263  Sum_probs=32.8

Q ss_pred             CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|++++|.+..+ |+. |+++++|++|||+++ +++.+|.
T Consensus        41 ~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~   86 (520)
T 2z7x_B           41 ILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHN-KLVKISC   86 (520)
T ss_dssp             HTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEECCSS-CCCEEEC
T ss_pred             ccccccccEEecCCCccCCcChHH-hhcccCCCEEecCCC-ceeecCc
Confidence            34567778888887777776 445 777788888888877 7777765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.24  E-value=0.00045  Score=62.06  Aligned_cols=44  Identities=18%  Similarity=0.229  Sum_probs=31.5

Q ss_pred             CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +..+++|++|+|++|.+..+ |.. |+++.+|++|++++| .+..+|
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~  120 (606)
T 3vq2_A           76 WHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVET-KLASLE  120 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCEEECTTS-CCCCSS
T ss_pred             hhchhhcCEeECCCCcccccChhh-cCCcccCCEEEccCC-cccccc
Confidence            34567777777777777766 555 777777777777777 777666

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.24  E-value=0.00016  Score=54.02  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=30.9

Q ss_pred             CCCCCccEEEeccCCCCCCCh---HhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPE---WFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~---~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ..+++|++|++++|.+..+|.   ..++.+++|++||++++ .+.++|++
T Consensus       117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~  165 (168)
T 2ell_A          117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS  165 (168)
T ss_dssp             SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred             hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence            455667777777777666665   22677777777777777 77777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.24  E-value=0.00015  Score=65.37  Aligned_cols=44  Identities=20%  Similarity=0.232  Sum_probs=40.5

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +..+++|++|+|++|.+..+|.+ +++|++|++|||+++ +|+.+|
T Consensus       459 ~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp  502 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD  502 (567)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG
T ss_pred             ccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc
Confidence            45677999999999999999999 999999999999999 999988

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.23  E-value=0.00019  Score=55.15  Aligned_cols=45  Identities=18%  Similarity=0.437  Sum_probs=39.7

Q ss_pred             CCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ..+++|++|+|++|.+..+ |.. |+++.+|++|+|+++ +|+.+|..
T Consensus        51 ~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~   96 (192)
T 1w8a_A           51 GRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGEN-KIKEISNK   96 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSC-CCCEECSS
T ss_pred             ccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECCCC-cCCccCHH
Confidence            4678999999999999988 556 999999999999999 99988764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.21  E-value=0.00038  Score=62.21  Aligned_cols=46  Identities=20%  Similarity=0.160  Sum_probs=33.3

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|+|++|.+..++...|+++++|++|||+++ +++.+|.
T Consensus        72 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~  117 (562)
T 3a79_B           72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISC  117 (562)
T ss_dssp             TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECS
T ss_pred             hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCc
Confidence            456677888888888777764333777888888888887 7777775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.20  E-value=0.00033  Score=58.23  Aligned_cols=47  Identities=19%  Similarity=0.272  Sum_probs=36.2

Q ss_pred             CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +..+++|++|++++|.+..+ |.. ++++++|++|+++++ .++.+|.++
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~~~~  121 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKN-HLVEIPPNL  121 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSS-CCCSCCSSC
T ss_pred             hhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCC-cCCccCccc
Confidence            45677888888888888776 445 788888888888888 888887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.19  E-value=0.00032  Score=58.10  Aligned_cols=46  Identities=17%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      ..+++|++|++++|.+..+|.. ++.+++|++|||+++ .++.+|+.+
T Consensus       188 ~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N-~l~~l~~~~  233 (317)
T 3o53_A          188 VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVLIEKAL  233 (317)
T ss_dssp             CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCEECTTC
T ss_pred             cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCC-cccchhhHh
Confidence            3478999999999999999998 889999999999999 998888753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.19  E-value=0.00064  Score=61.04  Aligned_cols=41  Identities=15%  Similarity=0.172  Sum_probs=22.6

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      ..+++|++|++++|.+..+|...++++.+|++|+++++ .+.
T Consensus       101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~  141 (606)
T 3vq2_A          101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIH  141 (606)
T ss_dssp             TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCC
T ss_pred             CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-ccc
Confidence            34555666666666555555222555666666666665 554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.18  E-value=0.00056  Score=59.23  Aligned_cols=47  Identities=19%  Similarity=0.244  Sum_probs=34.4

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|++++|.+..++...|+++++|++|||+++ +++.+|.+
T Consensus       227 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  273 (440)
T 3zyj_A          227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHD  273 (440)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTT
T ss_pred             hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChh
Confidence            455677777777777777665554777888888888888 88877764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.17  E-value=0.0007  Score=56.40  Aligned_cols=56  Identities=13%  Similarity=0.231  Sum_probs=36.8

Q ss_pred             cccccccceeEec---------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          171 SVTWNKAVRVSLS---------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       171 ~~~~~~~~~lsl~---------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ......++.+.+.         +..+++|++|++++|.+..+|.  ++++++|++|+++++ .+..+|
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~  126 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDIS  126 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCG
T ss_pred             hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCch
Confidence            3344455555554         3456777777777777777653  677777777777777 666665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.17  E-value=0.00097  Score=56.27  Aligned_cols=46  Identities=26%  Similarity=0.438  Sum_probs=34.6

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhh---cCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFF---QSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i---~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|+|++|.+..+|..++   +++.+|++|||+++ +|+.+|.
T Consensus       132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~  180 (361)
T 2xot_A          132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPL  180 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCH
T ss_pred             hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCH
Confidence            4567788888888888888888744   56888888888888 8887773

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.16  E-value=0.00049  Score=52.89  Aligned_cols=42  Identities=12%  Similarity=0.324  Sum_probs=21.7

Q ss_pred             CCCCCccEEEeccCC-CCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYAS-MKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~-l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ..+++|++|++++|. +..+| . ++++++|++|++++| .+..+|
T Consensus       133 ~~l~~L~~L~L~~n~~i~~~~-~-l~~l~~L~~L~l~~n-~i~~~~  175 (197)
T 4ezg_A          133 NTLPKVNSIDLSYNGAITDIM-P-LKTLPELKSLNIQFD-GVHDYR  175 (197)
T ss_dssp             TTCSSCCEEECCSCTBCCCCG-G-GGGCSSCCEEECTTB-CCCCCT
T ss_pred             hhCCCCCEEEccCCCCccccH-h-hcCCCCCCEEECCCC-CCcChH
Confidence            344555555555554 55554 2 555555555555555 554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.16  E-value=0.00083  Score=60.59  Aligned_cols=45  Identities=33%  Similarity=0.572  Sum_probs=23.5

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ..+++|++|+|++|.+..+|...|+++++|++|+|+++ .+..+|+
T Consensus        96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~  140 (597)
T 3oja_B           96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR  140 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCH
Confidence            34455555555555555554443455555555555555 5555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.15  E-value=0.00054  Score=57.83  Aligned_cols=47  Identities=21%  Similarity=0.296  Sum_probs=36.1

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|+|++|.+..++...|++|.+|++|+|+++ +|..+|.+
T Consensus       108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~  154 (361)
T 2xot_A          108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE  154 (361)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGG
T ss_pred             hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHH
Confidence            456778888888888887774433888888888888888 88888754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.15  E-value=0.0004  Score=56.07  Aligned_cols=42  Identities=21%  Similarity=0.246  Sum_probs=26.9

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+++|++|++++|.+..+|.  ++++++|++|+|+++ +++.+|.
T Consensus        61 ~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~  102 (263)
T 1xeu_A           61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNG  102 (263)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTT
T ss_pred             hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCc
Confidence            45566666666666666665  566666666666666 6666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.13  E-value=0.0006  Score=56.57  Aligned_cols=44  Identities=14%  Similarity=0.243  Sum_probs=33.7

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ..+++|++|++++|.+..+|.. ++.+++|++|+++++ .++.+|.
T Consensus       237 ~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N-~i~~~~~  280 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNN-NISAIGS  280 (330)
T ss_dssp             GGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSS-CCCCCCT
T ss_pred             cCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCC-cCCccCh
Confidence            3456778888888877788877 777888888888888 7777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.13  E-value=0.00059  Score=55.39  Aligned_cols=42  Identities=21%  Similarity=0.342  Sum_probs=19.4

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +++|++|++++|.+..+|...++++++|++|+++++ +++.+|
T Consensus       128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~  169 (285)
T 1ozn_A          128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVP  169 (285)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEEC
T ss_pred             CcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccC
Confidence            344444444444444444433444444444444444 444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.12  E-value=0.00056  Score=59.41  Aligned_cols=45  Identities=22%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ..+++|++|+|++|.+..+|...++++++|++|+|+++ .++.+|.
T Consensus       120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  164 (452)
T 3zyi_A          120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPS  164 (452)
T ss_dssp             TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECT
T ss_pred             cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCH
Confidence            34556666666666666665554556666666666666 5555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.11  E-value=0.00042  Score=50.58  Aligned_cols=43  Identities=19%  Similarity=0.197  Sum_probs=38.3

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC-CC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK-LP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~-LP  229 (232)
                      +..+++|++|++++|.+..+ .. ++++++|++|+++++ .+.. +|
T Consensus        38 ~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~~~   81 (149)
T 2je0_A           38 TDEFEELEFLSTINVGLTSI-AN-LPKLNKLKKLELSDN-RVSGGLE   81 (149)
T ss_dssp             CTTCTTCCEEECTTSCCCCC-TT-CCCCTTCCEEECCSS-CCCSCTH
T ss_pred             HhhcCCCcEEECcCCCCCCc-hh-hhcCCCCCEEECCCC-cccchHH
Confidence            46789999999999999988 55 999999999999999 8887 54

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.11  E-value=0.00081  Score=58.65  Aligned_cols=42  Identities=29%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      .+++|++|+|++|.+..+|...|+++.+|++|||+++ .+..+
T Consensus        78 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~  119 (477)
T 2id5_A           78 NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVIL  119 (477)
T ss_dssp             TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS-CCCEE
T ss_pred             CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC-ccccC
Confidence            4455555555555555555443455555555555555 44443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.10  E-value=0.00093  Score=55.12  Aligned_cols=41  Identities=17%  Similarity=0.272  Sum_probs=20.5

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      .+++|++|++++|.+..+|.  ++++++|++|+++++ .+..+|
T Consensus       105 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~  145 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN-QITNIS  145 (308)
T ss_dssp             TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG
T ss_pred             CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCC-ccCcCc
Confidence            34455555555555554443  455555555555555 444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.10  E-value=0.00082  Score=57.06  Aligned_cols=45  Identities=27%  Similarity=0.479  Sum_probs=31.5

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ..+++|++|++++|.+..+|...++++++|++|+++++ .+..+|+
T Consensus       114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~  158 (390)
T 3o6n_A          114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIED  158 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT
T ss_pred             cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccCh
Confidence            45667777777777777777764577777777777777 6666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.04  E-value=0.00093  Score=58.04  Aligned_cols=47  Identities=21%  Similarity=0.261  Sum_probs=33.1

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|++++|.+..++...|+++++|++|||+++ +++.+|..
T Consensus       238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~  284 (452)
T 3zyi_A          238 FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHD  284 (452)
T ss_dssp             GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChH
Confidence            445667777777777776654444777788888888888 77777754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.02  E-value=0.0012  Score=54.05  Aligned_cols=41  Identities=17%  Similarity=0.309  Sum_probs=23.3

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      ..+++|++|++++|.+..+|.  ++++++|++|+++++ .++.+
T Consensus       109 ~~l~~L~~L~L~~n~i~~~~~--l~~l~~L~~L~l~~n-~l~~~  149 (291)
T 1h6t_A          109 KDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNN-KITDI  149 (291)
T ss_dssp             TTCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCC
T ss_pred             ccCCCCCEEECCCCcCCCChh--hcCCCCCCEEEccCC-cCCcc
Confidence            344556666666665555533  555666666666666 55544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.02  E-value=0.00086  Score=51.46  Aligned_cols=44  Identities=14%  Similarity=0.206  Sum_probs=35.5

Q ss_pred             CCCCCCccEEEeccCCCCC-CChHhhcCCCCccEEEccCCCC-CCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKG-LPEWFFQSMPALRVLEWSRNGD-LTKLP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~-lp~~~i~~L~~Lr~LdL~~~~~-l~~LP  229 (232)
                      +..+++|++|++++|.+.. .|.. ++++++|++|++++| . +..+|
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n-~~i~~~~  153 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYN-GAITDIM  153 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSC-TBCCCCG
T ss_pred             hcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCC-CCccccH
Confidence            5567889999999988875 5666 888999999999998 6 77765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.02  E-value=0.0015  Score=56.50  Aligned_cols=43  Identities=21%  Similarity=0.257  Sum_probs=20.8

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      .+++|++|+|++|.+..+|...|+++++|++|+|+++ .++.+|
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~  152 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIP  152 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEEC
T ss_pred             CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccC
Confidence            3444555555555444444433445555555555555 444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.00  E-value=0.00033  Score=58.00  Aligned_cols=44  Identities=25%  Similarity=0.440  Sum_probs=26.5

Q ss_pred             CCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCC
Q 047834          185 PSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~  230 (232)
                      ..+++|++|++++|.+. .+|.. ++++++|++|+++++ .+. .+|.
T Consensus       122 ~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~~~p~  167 (313)
T 1ogq_A          122 SQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGN-RISGAIPD  167 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCEEECCG
T ss_pred             hCCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCC-cccCcCCH
Confidence            34566666666666555 55665 666666666666666 555 4554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.99  E-value=0.0014  Score=58.08  Aligned_cols=44  Identities=20%  Similarity=0.189  Sum_probs=34.5

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      +..+++|++|++++|.+..+|...|+++++|++||++++ .++.+
T Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~  113 (549)
T 2z81_A           70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTL  113 (549)
T ss_dssp             TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSS
T ss_pred             ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-ccccc
Confidence            456778888888888888777766788888888888888 77754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=96.96  E-value=0.00081  Score=58.13  Aligned_cols=40  Identities=23%  Similarity=0.360  Sum_probs=21.8

Q ss_pred             CCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      ..+++|++|+|++|.+..+ |.. |+++.+|++|+|++| +++
T Consensus        76 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~  116 (455)
T 3v47_A           76 RGLSSLIILKLDYNQFLQLETGA-FNGLANLEVLTLTQC-NLD  116 (455)
T ss_dssp             TTCTTCCEEECTTCTTCEECTTT-TTTCTTCCEEECTTS-CCB
T ss_pred             cccccCCEEeCCCCccCccChhh-ccCcccCCEEeCCCC-CCC
Confidence            3445555555555555544 334 555566666666655 444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=96.96  E-value=0.00083  Score=59.68  Aligned_cols=46  Identities=22%  Similarity=0.213  Sum_probs=31.1

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|+|++|.+..+|...|+++.+|++|+++++ +++.+|+
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~  117 (570)
T 2z63_A           72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLEN  117 (570)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTT
T ss_pred             ccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCC
Confidence            345667777777777776666433777777777777777 7776664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.96  E-value=0.00066  Score=59.84  Aligned_cols=56  Identities=16%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             cccceeEec---------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          175 NKAVRVSLS---------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       175 ~~~~~lsl~---------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      ..++.+.+.         ...+++|++|+|++|.+..+|.+ ++.+++|++|||+++ .+..+|+++
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~l  233 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNN-KLVLIEKAL  233 (487)
T ss_dssp             TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTS-CCCEECTTC
T ss_pred             CcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCC-cCcccchhh
Confidence            455555554         34578999999999999999998 889999999999999 999888753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=96.96  E-value=0.00087  Score=58.46  Aligned_cols=45  Identities=27%  Similarity=0.369  Sum_probs=26.2

Q ss_pred             CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|+|++|.+..+ |.. |+++++|++|+|+++ +++.+|.
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~   97 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSN-RLKLIPL   97 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSS-CCCSCCT
T ss_pred             ccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCC-cCCccCc
Confidence            34455666666666665554 334 566666666666666 5666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.95  E-value=0.00051  Score=57.43  Aligned_cols=46  Identities=17%  Similarity=0.231  Sum_probs=40.7

Q ss_pred             CCCCCccEEEecc-CCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRY-ASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~-~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ..+.+|++|+|++ |.+..+|...|++|.+|++|||+++ +|+.+|+.
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~   74 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD   74 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT
T ss_pred             CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH
Confidence            4667899999997 8999999655999999999999999 99988864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=96.94  E-value=0.0015  Score=52.70  Aligned_cols=40  Identities=15%  Similarity=0.210  Sum_probs=17.2

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      +++|++|++++|.+..++...++++++|++|+++++ .++.
T Consensus        99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~  138 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQS  138 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCC
T ss_pred             CccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccce
Confidence            344444444444444443311444444444444444 4443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.93  E-value=0.00066  Score=56.40  Aligned_cols=43  Identities=21%  Similarity=0.316  Sum_probs=31.2

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+++|++|++++|.+..+|.. ++++++|++|+++++ .++.+|.
T Consensus       239 ~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N-~l~~~~~  281 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTN-NITKVGV  281 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSS-CCCBCCT
T ss_pred             CCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCC-CCCccCh
Confidence            456777777777777777777 677777777777777 7777664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=96.91  E-value=0.0014  Score=53.67  Aligned_cols=41  Identities=20%  Similarity=0.275  Sum_probs=22.2

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      .+++|++|++++|.+..+|.  ++++++|++|+++++ .++.+|
T Consensus       154 ~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N-~i~~l~  194 (291)
T 1h6t_A          154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDLR  194 (291)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBCG
T ss_pred             cCCCCCEEEccCCccccchh--hcCCCccCEEECCCC-cCCCCh
Confidence            34555555555555555554  455555555555555 555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=96.91  E-value=0.0018  Score=53.41  Aligned_cols=42  Identities=12%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ..+++|++|++++|.+..+|.  ++++++|++|+++++ .++.+|
T Consensus       126 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~  167 (308)
T 1h6u_A          126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA-QVSDLT  167 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCG
T ss_pred             cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCC-cCCCCh
Confidence            344556666666665555554  555666666666665 555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.89  E-value=0.0012  Score=61.96  Aligned_cols=42  Identities=24%  Similarity=0.160  Sum_probs=25.2

Q ss_pred             CCCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      +..+++|++|+|++|.+..+ |+. |+++.+|++|||++| .+..
T Consensus        69 f~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~n-~l~~  111 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFELRLYFC-GLSD  111 (844)
T ss_dssp             TSSCTTCCEEECTTCCCCEECTTS-SCSCSSCCCEECTTC-CCSS
T ss_pred             hcCCCCCCEEECCCCcCcccCHhH-ccCCcccCEeeCcCC-CCCc
Confidence            34456666666666666554 444 666666666666666 5553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=96.89  E-value=0.001  Score=59.15  Aligned_cols=47  Identities=17%  Similarity=0.214  Sum_probs=33.7

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC--CCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK--LPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~--LP~s  231 (232)
                      +..+++|++|++++|++..+|...++++++|++|+++++ .++.  +|++
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~  144 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY  144 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG
T ss_pred             hcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh
Confidence            456677888888888777777633777888888888887 7764  5553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=96.88  E-value=0.0013  Score=53.39  Aligned_cols=47  Identities=28%  Similarity=0.311  Sum_probs=33.8

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|++++|.+..++...++++++|++|+++++ .++.+|.+
T Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~  147 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDD  147 (285)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHh
Confidence            345677888888888777765444777888888888888 77777653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.87  E-value=0.0011  Score=60.38  Aligned_cols=44  Identities=20%  Similarity=0.221  Sum_probs=33.5

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+++|++|+|++|.+..+|...|+++.+|++|+++++ ++..+|+
T Consensus        71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~  114 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKN  114 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCS
T ss_pred             cccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccCh
Confidence            4577888888888887777744778888888888888 7777764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=96.87  E-value=0.0011  Score=57.18  Aligned_cols=45  Identities=24%  Similarity=0.423  Sum_probs=27.8

Q ss_pred             CCCCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ..+++|++|++++|.+..+ |.. ++++++|++|+|+++ +++.+|.+
T Consensus       344 ~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~  389 (455)
T 3v47_A          344 ENLDKLEVLDLSYNHIRALGDQS-FLGLPNLKELALDTN-QLKSVPDG  389 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             cCcccCCEEECCCCcccccChhh-ccccccccEEECCCC-ccccCCHh
Confidence            4456666666666666655 344 666666666666666 66666653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=96.82  E-value=0.00074  Score=54.51  Aligned_cols=46  Identities=22%  Similarity=0.213  Sum_probs=29.5

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|++++|.+..+|...++++.+|++|+++++ ++..+|.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~  117 (276)
T 2z62_A           72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLEN  117 (276)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTT
T ss_pred             ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-CccccCc
Confidence            344566777777777666665433666777777777776 6666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=96.76  E-value=0.0011  Score=55.63  Aligned_cols=46  Identities=26%  Similarity=0.341  Sum_probs=40.6

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|++++|.+..++...|+++++|++||++++ +++.+|.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~  117 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSS  117 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCH
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCH
Confidence            567899999999999999886544999999999999999 9998885

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=96.76  E-value=0.00032  Score=58.09  Aligned_cols=46  Identities=22%  Similarity=0.431  Sum_probs=34.9

Q ss_pred             CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCCC
Q 047834          184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~s  231 (232)
                      +..+++|++|++++|.+. .+|.. ++++++|++|||+++ .+. .+|++
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~  144 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPS  144 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGG
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChH
Confidence            345678888888888776 77777 788888888888888 776 55643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=96.74  E-value=0.00098  Score=54.89  Aligned_cols=41  Identities=20%  Similarity=0.142  Sum_probs=18.9

Q ss_pred             CCccEEEeccCCCCCC-ChHhhcCC---CCccEEEccCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGL-PEWFFQSM---PALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~l-p~~~i~~L---~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ++|++|+|++|.+..+ |+. ++.+   ++|++|+|+++ +++.+|.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N-~l~~lp~  268 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFA-GLEQVPK  268 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSS-CCCSCCS
T ss_pred             CCCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCC-CCCchhh
Confidence            4444444444444443 443 3333   34555555555 4444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=96.74  E-value=0.0017  Score=54.03  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=27.6

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ..+++|++|++++|.+...+...++++++|++|++++| .++.+|
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~  327 (347)
T 4fmz_A          284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIR  327 (347)
T ss_dssp             GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCG
T ss_pred             cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-cccccc
Confidence            34566666666666666544433666777777777777 666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=96.74  E-value=0.00098  Score=59.04  Aligned_cols=43  Identities=16%  Similarity=0.217  Sum_probs=24.7

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+++|++|++++|.+..+|.. ++.+++|++|+++++ .++.+|.
T Consensus       385 ~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N-~l~~l~~  427 (549)
T 2z81_A          385 TLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSST-GIRVVKT  427 (549)
T ss_dssp             GCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTS-CCSCCCT
T ss_pred             cCCCCCEEECCCCCCccCChh-hcccccccEEECCCC-Ccccccc
Confidence            345556666666655556655 555556666666665 5555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.73  E-value=0.0026  Score=55.36  Aligned_cols=41  Identities=15%  Similarity=0.318  Sum_probs=22.2

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      .+++|++|++++|.+..+|.  ++++++|++|++++| .++.+|
T Consensus        88 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~  128 (466)
T 1o6v_A           88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDID  128 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG
T ss_pred             ccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCCh
Confidence            44555555555555555554  455555555555555 555444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.73  E-value=0.00018  Score=55.37  Aligned_cols=41  Identities=20%  Similarity=0.105  Sum_probs=22.1

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +++|++|++++|.+..+|.. ++.+++|++|+++++ ++..+|
T Consensus        69 l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~  109 (198)
T 1ds9_A           69 MENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIASLS  109 (198)
T ss_dssp             HTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH
T ss_pred             CCCCCEEECCCCCcccccch-hhcCCcCCEEECcCC-cCCcCC
Confidence            34555555555555555554 455555555555555 554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.70  E-value=0.0013  Score=52.00  Aligned_cols=43  Identities=14%  Similarity=0.264  Sum_probs=21.8

Q ss_pred             CCCCccEEEecc-CCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          186 SCPRLLTLLVRY-ASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       186 ~l~~Lr~L~l~~-~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      .+++|++|++++ +.++.+|...|+++++|++|+++++ .++.+|
T Consensus        78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp  121 (239)
T 2xwt_C           78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFP  121 (239)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCC
T ss_pred             CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCcccc
Confidence            344555555554 4555554332455555555555555 555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=96.64  E-value=0.0018  Score=53.35  Aligned_cols=42  Identities=19%  Similarity=0.117  Sum_probs=17.6

Q ss_pred             CCccEEEeccCCCCCCC-hHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLP-EWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp-~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ++|++|++++|.+...+ ...+..+.+|++|||+++ .++.+|+
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~  270 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK  270 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCS
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhh
Confidence            34444444444444322 111333444444444444 4444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=96.64  E-value=0.0011  Score=60.22  Aligned_cols=35  Identities=17%  Similarity=0.356  Sum_probs=15.3

Q ss_pred             CCCccEEEeccCCC-CCCChHhhcCCCCccEEEccCC
Q 047834          187 CPRLLTLLVRYASM-KGLPEWFFQSMPALRVLEWSRN  222 (232)
Q Consensus       187 l~~Lr~L~l~~~~l-~~lp~~~i~~L~~Lr~LdL~~~  222 (232)
                      +++|++|++++|.+ ..+|++ +++|++|++||++++
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACN  283 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTC
T ss_pred             cCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCC
Confidence            34444444444432 234444 444444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.63  E-value=0.00079  Score=53.17  Aligned_cols=43  Identities=16%  Similarity=0.292  Sum_probs=21.9

Q ss_pred             CCCCccEEEeccCC-CCCCChHhhcCCCCccEEEccC-CCCCCCCC
Q 047834          186 SCPRLLTLLVRYAS-MKGLPEWFFQSMPALRVLEWSR-NGDLTKLP  229 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~-l~~lp~~~i~~L~~Lr~LdL~~-~~~l~~LP  229 (232)
                      .+++|++|++++|+ +..+|...|+++++|++|++++ . +++.+|
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~   97 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYID   97 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEEC
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcC
Confidence            44555555555553 5555542245555555555555 3 555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=96.61  E-value=0.0045  Score=49.80  Aligned_cols=40  Identities=23%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      .+++|++|++++|.+..+| . ++.+++|++|+++++ .+..+
T Consensus       126 ~l~~L~~L~Ls~N~i~~~~-~-l~~l~~L~~L~L~~N-~i~~~  165 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLKSIV-M-LGFLSKLEVLDLHGN-EITNT  165 (263)
T ss_dssp             TCTTCCEEECTTSCCCBCG-G-GGGCTTCCEEECTTS-CCCBC
T ss_pred             CcccccEEECCCCcCCCCh-H-HccCCCCCEEECCCC-cCcch
Confidence            4455555555555555554 2 555555555555555 55443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=96.61  E-value=0.0025  Score=57.82  Aligned_cols=42  Identities=17%  Similarity=0.283  Sum_probs=26.9

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      +..+++|++|+|++|.+..+|.  ++.|++|+.|+|++| .+..+
T Consensus       105 l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N-~l~~l  146 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNN-KITDI  146 (605)
T ss_dssp             STTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEECCSS-CCCCC
T ss_pred             hccCCCCCEEEecCCCCCCCcc--ccCCCccCEEECCCC-ccCCc
Confidence            3445666667776666666643  666677777777766 66554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=96.61  E-value=0.0027  Score=59.98  Aligned_cols=46  Identities=24%  Similarity=0.356  Sum_probs=35.4

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCC-ccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPA-LRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~-Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|+|++|.+..+|.+ ++++.+ |++|+|+++ .+..+|+.
T Consensus       591 ~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N-~L~~lp~~  637 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHN-KLKYIPNI  637 (876)
T ss_dssp             CCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSS-CCCSCCSC
T ss_pred             hcCCCcceEEECcCCccccchHH-HhhccccCCEEECcCC-CCCcCchh
Confidence            44567788888888877788877 777877 888888888 77777764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=96.59  E-value=0.0029  Score=57.40  Aligned_cols=42  Identities=19%  Similarity=0.271  Sum_probs=24.7

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ..+++|++|+|++|.+..++.  ++.|.+|+.|+|++| .|..+|
T Consensus       150 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~i~~l~  191 (605)
T 1m9s_A          150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDLR  191 (605)
T ss_dssp             GSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBCG
T ss_pred             cccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC-CCCCCh
Confidence            345566666666666655555  556666666666666 555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=96.58  E-value=0.0017  Score=59.01  Aligned_cols=41  Identities=27%  Similarity=0.494  Sum_probs=28.0

Q ss_pred             CccEEEeccCCCCCCChHhhc--CCCCccEEEccCCCCCCCCCCC
Q 047834          189 RLLTLLVRYASMKGLPEWFFQ--SMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       189 ~Lr~L~l~~~~l~~lp~~~i~--~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +|++|+|++|.+..+|.. +.  .+++|++|||+++ +++.+|.+
T Consensus       489 ~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N-~l~~ip~~  531 (636)
T 4eco_A          489 LLTSIDLRFNKLTKLSDD-FRATTLPYLVGIDLSYN-SFSKFPTQ  531 (636)
T ss_dssp             GCCEEECCSSCCCBCCGG-GSTTTCTTCCEEECCSS-CCSSCCCG
T ss_pred             CccEEECcCCcCCccChh-hhhccCCCcCEEECCCC-CCCCcChh
Confidence            667777777766677766 54  6777777777777 66666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=96.57  E-value=0.004  Score=50.87  Aligned_cols=44  Identities=20%  Similarity=0.266  Sum_probs=27.4

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      +..+++|++|++++|.+..+|...++.+++|++||++++ .+...
T Consensus       195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~  238 (306)
T 2z66_A          195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTS  238 (306)
T ss_dssp             TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCCBC
T ss_pred             hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCccc
Confidence            344566666777666666665533666667777777766 55543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.52  E-value=0.0027  Score=57.84  Aligned_cols=45  Identities=20%  Similarity=0.378  Sum_probs=30.0

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      .+++|++|+|++|.+..+|...|+++.+|++|||+++ +++.+|++
T Consensus       534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~  578 (680)
T 1ziw_A          534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPAS  578 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHh
Confidence            3456666677666666676644667777777777777 77776654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.52  E-value=0.0056  Score=53.40  Aligned_cols=41  Identities=24%  Similarity=0.280  Sum_probs=22.2

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ..+++|++|++++|.+..+|   ++++++|++||++++ +++.+|
T Consensus        82 ~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~  122 (457)
T 3bz5_A           82 SQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD  122 (457)
T ss_dssp             TTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC
T ss_pred             ccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec
Confidence            34455555555555555553   455555555555555 555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=96.52  E-value=0.002  Score=52.64  Aligned_cols=46  Identities=24%  Similarity=0.255  Sum_probs=36.2

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|++++|.+..++...++++++|++|+|+++ .+..+|.
T Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  216 (306)
T 2z66_A          171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT  216 (306)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCS
T ss_pred             HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccCh
Confidence            456788888888888888774333888888999999888 8887765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=96.49  E-value=0.0022  Score=59.64  Aligned_cols=46  Identities=24%  Similarity=0.418  Sum_probs=31.4

Q ss_pred             CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCCC
Q 047834          184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~s  231 (232)
                      +..+++|++|+|++|.+. .+|++ +++|++|++|||+++ ++. .+|++
T Consensus       652 l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N-~l~g~ip~~  699 (768)
T 3rgz_A          652 IGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSN-KLDGRIPQA  699 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSS-CCEECCCGG
T ss_pred             HhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCC-cccCcCChH
Confidence            345667777777777666 67777 777777777777777 666 55543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=96.49  E-value=0.0026  Score=56.00  Aligned_cols=42  Identities=26%  Similarity=0.420  Sum_probs=39.2

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ++|++|++++|.+..+|.. +.++++|++||++++ +++.+|.+
T Consensus       421 ~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~L~~N-~l~~l~~~  462 (520)
T 2z7x_B          421 PRIKVLDLHSNKIKSIPKQ-VVKLEALQELNVASN-QLKSVPDG  462 (520)
T ss_dssp             TTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCCTT
T ss_pred             ccCCEEECCCCcccccchh-hhcCCCCCEEECCCC-cCCccCHH
Confidence            6999999999999999999 779999999999999 99999975

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=96.43  E-value=0.0019  Score=53.27  Aligned_cols=37  Identities=27%  Similarity=0.245  Sum_probs=26.6

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDL  225 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l  225 (232)
                      ++|++|++++|.+..+|...++++++|++||++++ ++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l  185 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN-PE  185 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC-TT
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC-Cc
Confidence            67777777777777776333777777777777777 53

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=96.40  E-value=0.0024  Score=60.41  Aligned_cols=41  Identities=27%  Similarity=0.468  Sum_probs=28.2

Q ss_pred             CccEEEeccCCCCCCChHhhc--CCCCccEEEccCCCCCCCCCCC
Q 047834          189 RLLTLLVRYASMKGLPEWFFQ--SMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       189 ~Lr~L~l~~~~l~~lp~~~i~--~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +|++|+|++|++..+|.. +.  .+++|+.|||+++ ++..+|.+
T Consensus       729 ~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N-~L~~lp~~  771 (876)
T 4ecn_A          729 LLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYN-CFSSFPTQ  771 (876)
T ss_dssp             GCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSS-CCSSCCCG
T ss_pred             CccEEECCCCCCccchHH-hhhccCCCcCEEEeCCC-CCCccchh
Confidence            677777777766677776 54  6777777777777 67666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.38  E-value=0.0032  Score=54.80  Aligned_cols=56  Identities=16%  Similarity=0.239  Sum_probs=45.1

Q ss_pred             cccccccceeEec---------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          171 SVTWNKAVRVSLS---------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       171 ~~~~~~~~~lsl~---------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ......++.+.+.         +..+++|++|++++|.+..+|.  ++++++|++|+++++ .+..+|
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~  150 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDIS  150 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEE-EECCCG
T ss_pred             hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCC-ccCCCh
Confidence            4444566666655         4578899999999999999987  899999999999999 777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=96.36  E-value=0.0011  Score=54.53  Aligned_cols=46  Identities=17%  Similarity=0.140  Sum_probs=32.3

Q ss_pred             CCCCCccEEEeccCCCCCCChH---hhcCCCCccEEEccCCCCCCCC-CCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEW---FFQSMPALRVLEWSRNGDLTKL-PMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~---~i~~L~~Lr~LdL~~~~~l~~L-P~s  231 (232)
                      ..+++|++|++++|+++.+|..   +++++++|++|||+++ .+..+ |++
T Consensus       194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~  243 (310)
T 4glp_A          194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPS  243 (310)
T ss_dssp             TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSC
T ss_pred             hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhh
Confidence            3566777777777777666653   3567788888888888 77766 654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.34  E-value=0.0033  Score=56.03  Aligned_cols=42  Identities=21%  Similarity=0.354  Sum_probs=39.0

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ++|++|++++|.++.+|.. +.++++|++|||+++ +++.+|++
T Consensus       450 ~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L~~N-~l~~l~~~  491 (562)
T 3a79_B          450 PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASN-QLKSVPDG  491 (562)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TTSSCCCSEEECCSS-CCCCCCTT
T ss_pred             CcCCEEECCCCcCcccChh-hcCCCCCCEEECCCC-CCCCCCHH
Confidence            6899999999999999999 679999999999999 99999975

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.33  E-value=0.0035  Score=56.21  Aligned_cols=40  Identities=13%  Similarity=0.100  Sum_probs=16.6

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      +++|++|++++|.+..++...++++++|++|+++++ .+..
T Consensus       104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~  143 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISS  143 (606)
T ss_dssp             CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCC
T ss_pred             cccccEeeccccCcccCCcchhccCCcccEEECCCC-cccc
Confidence            344444444444444432111444444444444444 4443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.29  E-value=0.0099  Score=51.80  Aligned_cols=41  Identities=29%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ..+|++|++++|.+..+| + ++++++|++|+++++ .++.+|+
T Consensus       172 ~~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N-~l~~l~~  212 (454)
T 1jl5_A          172 PPSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNN-SLKKLPD  212 (454)
T ss_dssp             CTTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSSCCC
T ss_pred             cccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCC-cCCcCCC
Confidence            357888888888888887 4 788888888888888 8887775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.28  E-value=0.0038  Score=54.47  Aligned_cols=41  Identities=32%  Similarity=0.413  Sum_probs=36.6

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ++|++|++++|.+..+| + ++++.+|++|+++++ +++.+|+.
T Consensus       131 ~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N-~l~~lp~~  171 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNN-SLKKLPDL  171 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSS-CCSCCCCC
T ss_pred             CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCC-cCcccCCC
Confidence            68999999999999999 5 899999999999999 89988864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.28  E-value=0.0025  Score=53.39  Aligned_cols=46  Identities=22%  Similarity=0.279  Sum_probs=35.4

Q ss_pred             CCCCCccEEEeccC-CCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYA-SMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~-~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      ....+|+.|++.++ .++.+|...|+++.+|++|||+++ +|+.+|++
T Consensus       174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~  220 (350)
T 4ay9_X          174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY  220 (350)
T ss_dssp             STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS
T ss_pred             ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh
Confidence            34457788888754 788888765788888888888888 88888864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=96.24  E-value=0.0039  Score=51.45  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=43.3

Q ss_pred             ccccceeEec----------CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834          174 WNKAVRVSLS----------PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       174 ~~~~~~lsl~----------~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      ...++.+.+.          +..+++|++|++++|.+..+|.. ++.+++|++|+++++ .+.
T Consensus       190 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N-~~~  250 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGN-GFH  250 (317)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTC-CCB
T ss_pred             cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCC-Ccc
Confidence            4556666655          45678999999999999999999 899999999999999 776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.22  E-value=0.0048  Score=57.94  Aligned_cols=42  Identities=24%  Similarity=0.350  Sum_probs=18.7

Q ss_pred             CCCCCccEEEeccC-CCCCC-ChHhhcCCCCccEEEccCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYA-SMKGL-PEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~-~l~~l-p~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      ..+++|++|+|++| .+..+ |.. |++|++||+|||+++ ++..+
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N-~l~~~   88 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSS-KIYFL   88 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTC-CCCEE
T ss_pred             cccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCC-cCccc
Confidence            34444444444444 23333 233 444444444444444 44433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.21  E-value=0.0022  Score=53.77  Aligned_cols=37  Identities=19%  Similarity=0.270  Sum_probs=23.2

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDL  225 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l  225 (232)
                      .++++|+|++|+++.+|...|++|++|++|||+++ ++
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i   66 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DV   66 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TT
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CC
Confidence            45666666666666666543566666666666666 44

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=96.18  E-value=0.0031  Score=56.57  Aligned_cols=44  Identities=20%  Similarity=0.202  Sum_probs=31.5

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +..+++|++|++++|.+..+|.. ++++++|++|+++++ .+..+|
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n-~l~~~~  317 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSAN-KFENLC  317 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTC-CCSBGG
T ss_pred             hccccCCCEEeccCCccCCCChh-hcccccCCEEECccC-CcCcCc
Confidence            34567777777777777777777 677777777777777 666553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.11  E-value=0.005  Score=44.30  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=32.9

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRN  222 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~  222 (232)
                      .+|++|+|++|.|+.||..+|..|.+|++|+|++.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            47999999999999999998999999999999987

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.10  E-value=0.013  Score=53.26  Aligned_cols=38  Identities=39%  Similarity=0.415  Sum_probs=18.2

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +++|++|+|++|.++.+|.    .+++|++|+|+++ +++.+|
T Consensus        80 l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~  117 (622)
T 3g06_A           80 PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLP  117 (622)
T ss_dssp             CTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCC
T ss_pred             CCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCC
Confidence            3455555555555555554    2344444444444 444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=96.08  E-value=0.0041  Score=57.78  Aligned_cols=47  Identities=23%  Similarity=0.364  Sum_probs=41.4

Q ss_pred             CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~si  232 (232)
                      +..+++|++|+|++|.+. .+|.+ |++|++|++|||+++ ++. .+|++|
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N-~l~g~ip~~l  676 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHN-DISGSIPDEV  676 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGG
T ss_pred             hhccccccEEECcCCcccccCCHH-HhccccCCEEeCcCC-ccCCCCChHH
Confidence            456789999999999887 79999 999999999999999 887 788654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.07  E-value=0.0003  Score=54.16  Aligned_cols=38  Identities=29%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      ++|++|++++|.+..+| . ++++++|++|+++++ .+..+
T Consensus        93 ~~L~~L~L~~N~l~~l~-~-~~~l~~L~~L~l~~N-~i~~~  130 (198)
T 1ds9_A           93 DTLEELWISYNQIASLS-G-IEKLVNLRVLYMSNN-KITNW  130 (198)
T ss_dssp             HHCSEEEEEEEECCCHH-H-HHHHHHSSEEEESEE-ECCCH
T ss_pred             CcCCEEECcCCcCCcCC-c-cccCCCCCEEECCCC-cCCch
Confidence            44555555555555554 2 455555555555555 44443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=95.91  E-value=0.016  Score=52.19  Aligned_cols=38  Identities=37%  Similarity=0.441  Sum_probs=18.8

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ++|++|+|++|.+..+|.  |+  .+|++|||+++ +|+.+|.
T Consensus       160 ~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N-~L~~lp~  197 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTN-LLESLPA  197 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC--CC--TTCCEEECCSS-CCSSCCC
T ss_pred             CCcCEEECCCCCCCCcch--hh--CCCCEEECcCC-CCCchhh
Confidence            345555555555555554  22  45555555555 5555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.90  E-value=0.0033  Score=55.31  Aligned_cols=42  Identities=19%  Similarity=0.258  Sum_probs=25.8

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ..+++|++|+|++|.+..+++  ++.+++|++|||+++ .++.+|
T Consensus        55 ~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~   96 (487)
T 3oja_A           55 APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL   96 (487)
T ss_dssp             TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEE
T ss_pred             hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCC
Confidence            455666666666666655554  566666666666666 555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=95.84  E-value=0.0061  Score=53.18  Aligned_cols=42  Identities=21%  Similarity=0.227  Sum_probs=35.2

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +..+++|++|++++|.+..+|   ++++++|++||++++ .++.+|
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~  101 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD  101 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC
T ss_pred             hcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee
Confidence            346788999999999888885   788999999999999 888765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.74  E-value=0.0053  Score=49.86  Aligned_cols=38  Identities=32%  Similarity=0.473  Sum_probs=16.7

Q ss_pred             CCCccEEEeccCCCCCCC---hHhhcCCCCccEEEccCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLP---EWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp---~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      +++|++|+|++|.+..++   +. ++++++|++|||++. +|+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~-~~~l~~L~~L~Ls~N-~i~  209 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSI-VQKAPNLKILNLSGN-ELK  209 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTH-HHHSTTCCEEECTTS-CCC
T ss_pred             CCCCCEEECCCCCCCCCccchhH-HhhCCCCCEEECCCC-ccC
Confidence            344444444444443332   22 344444444444444 443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=95.51  E-value=0.026  Score=51.24  Aligned_cols=39  Identities=23%  Similarity=0.259  Sum_probs=27.2

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      .+++|++|+|++|.+..+|.+ ++++++|++|+|+++ .+.
T Consensus       259 ~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N-~l~  297 (622)
T 3g06_A          259 LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGN-PLS  297 (622)
T ss_dssp             CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSC-CCC
T ss_pred             ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCC-CCC
Confidence            345677777777777777777 677777777777777 554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=94.81  E-value=0.027  Score=50.62  Aligned_cols=39  Identities=31%  Similarity=0.264  Sum_probs=22.7

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +++|++|++++|.+..+|.    .+++|++|+|+++ .++.+|.
T Consensus       139 l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~L~~lp~  177 (571)
T 3cvr_A          139 PALLEYINADNNQLTMLPE----LPTSLEVLSVRNN-QLTFLPE  177 (571)
T ss_dssp             CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSCCCC
T ss_pred             CccccEEeCCCCccCcCCC----cCCCcCEEECCCC-CCCCcch
Confidence            3455666666665555555    2456666666666 6666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=94.53  E-value=0.069  Score=40.41  Aligned_cols=43  Identities=7%  Similarity=-0.043  Sum_probs=28.4

Q ss_pred             CCCCCCccEEEeccC-CCCCCChHhhcCC----CCccEEEccCCCCCC
Q 047834          184 PPSCPRLLTLLVRYA-SMKGLPEWFFQSM----PALRVLEWSRNGDLT  226 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~-~l~~lp~~~i~~L----~~Lr~LdL~~~~~l~  226 (232)
                      +..+++|+.|+|++| .++.--=..+..+    ++|++|||++|.+|+
T Consensus        81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            567888888888888 4543111114444    368888888886664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=94.31  E-value=0.016  Score=48.90  Aligned_cols=36  Identities=22%  Similarity=0.377  Sum_probs=18.6

Q ss_pred             CCCCccEEEeccCCCCC-----CChHhhcCCCCccEEEccCC
Q 047834          186 SCPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEWSRN  222 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL~~~  222 (232)
                      .+++|++|+|++|.+..     +|.. ++++++|++|+|++|
T Consensus        92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           92 KCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNN  132 (386)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSS
T ss_pred             hCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCC
Confidence            44555555555554443     4444 455555555555555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=94.17  E-value=0.014  Score=49.22  Aligned_cols=41  Identities=20%  Similarity=0.213  Sum_probs=24.6

Q ss_pred             CCCCCccEEEeccCCCCC-----CChHhh--cCCCCccEEEccCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKG-----LPEWFF--QSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~-----lp~~~i--~~L~~Lr~LdL~~~~~l~~  227 (232)
                      ..+++|++|+|++|.+..     +|.. +  +++++|++|+|++| .+..
T Consensus       241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~~~L~~L~L~~n-~i~~  288 (386)
T 2ca6_A          241 KSWPNLRELGLNDCLLSARGAAAVVDA-FSKLENIGLQTLRLQYN-EIEL  288 (386)
T ss_dssp             GGCTTCCEEECTTCCCCHHHHHHHHHH-HHTCSSCCCCEEECCSS-CCBH
T ss_pred             ccCCCcCEEECCCCCCchhhHHHHHHH-HhhccCCCeEEEECcCC-cCCH
Confidence            445666666666666543     3554 4  33666777777666 6654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=94.06  E-value=0.023  Score=46.72  Aligned_cols=36  Identities=19%  Similarity=0.163  Sum_probs=17.2

Q ss_pred             CCCCccEEEeccC-CCC--CCChHhhcCCCCccEEEccCC
Q 047834          186 SCPRLLTLLVRYA-SMK--GLPEWFFQSMPALRVLEWSRN  222 (232)
Q Consensus       186 ~l~~Lr~L~l~~~-~l~--~lp~~~i~~L~~Lr~LdL~~~  222 (232)
                      .+++|++|++++| .+.  .+|.. ++++++|++|++++|
T Consensus       140 ~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          140 KNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWC  178 (336)
T ss_dssp             TCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred             cCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence            3445555555554 343  24443 444555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=93.73  E-value=0.023  Score=43.10  Aligned_cols=56  Identities=9%  Similarity=0.037  Sum_probs=39.5

Q ss_pred             ccccccceeEec------------CCCC----CCccEEEeccC-CCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834          172 VTWNKAVRVSLS------------PPSC----PRLLTLLVRYA-SMKGLPEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       172 ~~~~~~~~lsl~------------~~~l----~~Lr~L~l~~~-~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      .....++.+.+.            +..+    ++|++|+|++| +++.---..+.++++|++|+|++|..++.
T Consensus        82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            345567777776            2332    47999999999 57642112277899999999999977763

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=93.55  E-value=0.68  Score=37.84  Aligned_cols=113  Identities=11%  Similarity=0.011  Sum_probs=64.0

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcC---CchhHHHHHHH
Q 047834            5 YSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHL---SSETHRKCFLF   81 (232)
Q Consensus         5 ~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~~k~cfl~   81 (232)
                      +...+|+..|+|.|+++..++..+.. ..+.+.+-   .++..          .+...+.-.+..+   ++. .+..+..
T Consensus       226 ~~~~~i~~~tgG~P~~l~~~~~~~~~-~~~~~~~~---~~~~~----------~~~~~~~~~l~~l~~~~~~-~~~~l~~  290 (350)
T 2qen_A          226 NEIEEAVELLDGIPGWLVVFGVEYLR-NGDFGRAM---KRTLE----------VAKGLIMGELEELRRRSPR-YVDILRA  290 (350)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH-HCCHHHHH---HHHHH----------HHHHHHHHHHHHHHHHCHH-HHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhc-cccHhHHH---HHHHH----------HHHHHHHHHHHHHHhCChh-HHHHHHH
Confidence            46678999999999999999877543 12332221   11111          1222222222333   667 5888888


Q ss_pred             hhhcCCCccccHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHcccchh-------hHHHHHHHH
Q 047834           82 CALFLKNQLIRKDEHIDLWIGEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE-------MHDMLRDLA  143 (232)
Q Consensus        82 ~a~fp~~~~~~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~-------mhdli~~~~  143 (232)
                      +|.   + ..+...+.....+.. ...      .......+++.|++++++..       .|.+++.+.
T Consensus       291 la~---g-~~~~~~l~~~~~~~~-~~~------~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~  348 (350)
T 2qen_A          291 IAL---G-YNRWSLIRDYLAVKG-TKI------PEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL  348 (350)
T ss_dssp             HHT---T-CCSHHHHHHHHHHTT-CCC------CHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred             HHh---C-CCCHHHHHHHHHHHh-CCC------CHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence            887   2 144455544432211 011      12445688999999999963       455665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=93.35  E-value=0.026  Score=46.40  Aligned_cols=42  Identities=14%  Similarity=0.173  Sum_probs=34.5

Q ss_pred             CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      +..+++|++|++++|.+. ..|.. ++++++|++|++++|..+.
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~  156 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS  156 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCC
Confidence            567889999999999877 56777 8889999999999985454

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=91.97  E-value=0.06  Score=46.24  Aligned_cols=38  Identities=24%  Similarity=0.194  Sum_probs=33.2

Q ss_pred             CCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834          187 CPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      .++|++|++++|.+.     .+|.. +.++++|++||++++ .+.
T Consensus       369 ~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~N-~i~  411 (461)
T 1z7x_W          369 GSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNN-CLG  411 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCCCEEECCSS-SCC
T ss_pred             CCceEEEECCCCCCChhhHHHHHHH-HHhCCCccEEECCCC-CCC
Confidence            679999999999887     78888 888999999999999 775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=91.50  E-value=0.13  Score=42.95  Aligned_cols=44  Identities=16%  Similarity=0.043  Sum_probs=31.4

Q ss_pred             CCCC-CccEEEeccCCCCCCChHhhcCC-----CCccEEEccCCCCCCCCC
Q 047834          185 PSCP-RLLTLLVRYASMKGLPEWFFQSM-----PALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       185 ~~l~-~Lr~L~l~~~~l~~lp~~~i~~L-----~~Lr~LdL~~~~~l~~LP  229 (232)
                      ..++ +|++|+|++|.+.......+..+     .+|++|||++| .+...+
T Consensus        47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~   96 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKS   96 (362)
T ss_dssp             HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred             HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHH
Confidence            3456 88888888888876533326654     88889999888 776543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=91.47  E-value=0.13  Score=41.64  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=31.4

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCC--CccEEEccCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMP--ALRVLEWSRNGDLT  226 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~--~Lr~LdL~~~~~l~  226 (232)
                      .+++|++|+|++|.+..+.+  ++.+.  +|++|+|++. .+.
T Consensus       194 ~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L~L~~N-pl~  233 (267)
T 3rw6_A          194 KAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGN-SLC  233 (267)
T ss_dssp             HSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEEECTTS-TTG
T ss_pred             hCCCCCEEECCCCccCCchh--hhhcccCCcceEEccCC-cCc
Confidence            57899999999999888743  66666  8999999998 665

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=90.79  E-value=2.3  Score=34.69  Aligned_cols=111  Identities=12%  Similarity=-0.003  Sum_probs=62.0

Q ss_pred             HHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHH-HHHhhcCCCCCCCCCcchhhHHH-HhHh--cCCchhHHHHHHHhh
Q 047834            8 SVLCFACNSISLTLITIGSAMASIRNNPAEWENA-VNELKNYPAEFPGMGDLIFPCLK-FSYD--HLSSETHRKCFLFCA   83 (232)
Q Consensus         8 ~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~-l~~L~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~~k~cfl~~a   83 (232)
                      .+|+..|+|.|+++..++..+.. ..+.+.|-.. .+....          .+...+. +.++  .|++. .+..+..+|
T Consensus       233 ~~i~~~t~G~P~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~~-~~~~l~~la  300 (357)
T 2fna_A          233 EVVYEKIGGIPGWLTYFGFIYLD-NKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARKR-YLNIMRTLS  300 (357)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHHH-HHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHcc-ccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccHH-HHHHHHHHH
Confidence            67899999999999999988754 2344434221 110000          1112221 1111  67787 588888888


Q ss_pred             hcCCCccccHHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHHHcccchh-------hHHHHHHH
Q 047834           84 LFLKNQLIRKDEHIDLWI-GEGLLRDSHNIAVARLQGESIIDSLIRVCLLEE-------MHDMLRDL  142 (232)
Q Consensus        84 ~fp~~~~~~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~~l~~Lv~~~ll~~-------mhdli~~~  142 (232)
                      .   +.  +...+..... ..|. ..      .......+++.|++++++..       .|+++++.
T Consensus       301 ~---g~--~~~~l~~~~~~~~g~-~~------~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~  355 (357)
T 2fna_A          301 K---CG--KWSDVKRALELEEGI-EI------SDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA  355 (357)
T ss_dssp             T---CB--CHHHHHHHHHHHHCS-CC------CHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred             c---CC--CHHHHHHHHHHhcCC-CC------CHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence            7   22  4444432211 1121 00      12345688999999999963       45665553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=90.58  E-value=0.11  Score=43.43  Aligned_cols=41  Identities=12%  Similarity=0.072  Sum_probs=32.7

Q ss_pred             CCccEEEeccCCCCCCChHhhc----CC-CCccEEEccCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQ----SM-PALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~----~L-~~Lr~LdL~~~~~l~~LP  229 (232)
                      ++|++|+|++|.+...+...+.    .+ .+|++|||+++ .+...+
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~  125 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKS  125 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHH
Confidence            8999999999998865543233    34 89999999999 887765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=90.39  E-value=0.16  Score=41.78  Aligned_cols=35  Identities=17%  Similarity=0.350  Sum_probs=23.3

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSR  221 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~  221 (232)
                      +++|++|+|.+|+++.+|+..|.++.+|+.|+|.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~  259 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH  259 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence            56667777766666666666566666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=90.37  E-value=0.1  Score=44.69  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=29.2

Q ss_pred             CCCCccEEEeccCCCCC-----CChHhhcCCCCccEEEccCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      .+++|++|++++|.+..     +|.. +.++++|++||++++ .+.
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~  297 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGN-ELG  297 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTC-CCH
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCC-CCc
Confidence            46788888888887766     6777 777788888888877 653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.30  E-value=0.4  Score=34.05  Aligned_cols=38  Identities=24%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             cEEEeccCCCC--CCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          191 LTLLVRYASMK--GLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       191 r~L~l~~~~l~--~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      .+++-++.+++  .+|.. +-  .+|++|||++. +|+.||.++
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-lp--~~l~~L~Ls~N-~l~~l~~~~   50 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-FP--VDTTELVLTGN-NLTALPPGL   50 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-CC--TTCSEEECTTS-CCSSCCTTT
T ss_pred             CEEEeCCCCCccccCCCC-CC--cCCCEEECCCC-cCCccChhh
Confidence            36777777888  99987 33  57999999999 999999853

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=89.30  E-value=0.13  Score=45.60  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             CCCCCccEEEeccCCCCC--CChHhhcCCCCccEEEccCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKG--LPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~--lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      ..+++|++|++++|.+..  ++.. ++++++|++|+|++| +++
T Consensus       485 ~~~~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~ls~n-~it  526 (592)
T 3ogk_B          485 RGCPNLQKLEMRGCCFSERAIAAA-VTKLPSLRYLWVQGY-RAS  526 (592)
T ss_dssp             TCCTTCCEEEEESCCCBHHHHHHH-HHHCSSCCEEEEESC-BCC
T ss_pred             hcCcccCeeeccCCCCcHHHHHHH-HHhcCccCeeECcCC-cCC
Confidence            345566666666665431  2332 455666666666666 443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=87.07  E-value=0.26  Score=41.65  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=21.7

Q ss_pred             CCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834          186 SCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      ..++|++|+|++|.+.     .++.. +...++|++|||+++ .|.
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N-~i~  252 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARA-AREHPSLELLHLYFN-ELS  252 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHH-HHHCSSCCEEECTTS-SCC
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHH-HHhCCCCCEEeccCC-CCC
Confidence            3456666666666554     23333 445566666666666 543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=86.75  E-value=0.42  Score=39.18  Aligned_cols=46  Identities=24%  Similarity=0.226  Sum_probs=37.9

Q ss_pred             CCCCCCcc-EEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLL-TLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr-~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+.+|+ .+.+.+ +++.+++.-|.++.+|+.|++++. +++.+|+.
T Consensus       269 F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~  315 (329)
T 3sb4_A          269 FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDE  315 (329)
T ss_dssp             TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECTT
T ss_pred             hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccchh
Confidence            56778898 999987 788887665889999999999888 88888763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=86.28  E-value=0.27  Score=41.53  Aligned_cols=40  Identities=13%  Similarity=0.039  Sum_probs=30.4

Q ss_pred             CCCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      ..+++|++|+|++|.+.     .|+.. +.+..+|++|||++| .|.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N-~i~  224 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYN-GAG  224 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSS-CCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCC-CCC
Confidence            45678888888888764     34555 677788999999888 775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=85.97  E-value=0.12  Score=43.54  Aligned_cols=35  Identities=17%  Similarity=0.294  Sum_probs=16.5

Q ss_pred             CCCccEEEeccCCCCC-----CChHhhcCCCCccEEEccCC
Q 047834          187 CPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEWSRN  222 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL~~~  222 (232)
                      +++|++|+|+.|.+..     ++.. +.++++|+.|||++|
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~-L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDH-VDKIKHLKFINMKYN  317 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTT-HHHHTTCSEEECCSB
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhh-cccCCcceEEECCCC
Confidence            4455555555444332     2333 344455555555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=85.65  E-value=0.39  Score=36.09  Aligned_cols=39  Identities=28%  Similarity=0.188  Sum_probs=29.0

Q ss_pred             CCCCccEEEeccCCCCC-----CChHhhcCCCCccEEEc--cCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEW--SRNGDLT  226 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL--~~~~~l~  226 (232)
                      ..++|++|+|++|.+..     |... +.....|++|||  +++ .|.
T Consensus        91 ~n~~L~~L~L~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N-~i~  136 (185)
T 1io0_A           91 VNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQ-PLG  136 (185)
T ss_dssp             HCSSCCEEECCSSCCCHHHHHHHHHG-GGGCSSCCEEECCCCSS-CCC
T ss_pred             hCCCcCEEECcCCcCCHHHHHHHHHH-HHhCCCceEEEecCCCC-CCC
Confidence            44678888888887753     5666 777788999998  667 554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=84.30  E-value=0.68  Score=34.74  Aligned_cols=41  Identities=12%  Similarity=0.089  Sum_probs=31.1

Q ss_pred             CCCCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLT  226 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~  226 (232)
                      +...++|++|+|++|.+.     .+... +....+|++|||+++ .|.
T Consensus        61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~-L~~n~~L~~L~L~~N-~i~  106 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVESN-FIS  106 (185)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCSS-CCC
T ss_pred             HHhCCCcCEEECcCCCCChHHHHHHHHH-HHhCCCcCEEECcCC-cCC
Confidence            345678999999999765     35555 666788999999998 765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=83.33  E-value=0.42  Score=42.24  Aligned_cols=38  Identities=18%  Similarity=0.133  Sum_probs=21.1

Q ss_pred             CCCccEEEeccCCCCCC-ChHhhcCCCCccEEEccCCCCC
Q 047834          187 CPRLLTLLVRYASMKGL-PEWFFQSMPALRVLEWSRNGDL  225 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~l-p~~~i~~L~~Lr~LdL~~~~~l  225 (232)
                      +++|++|++++|.+... +..++..+++|++|++++| .+
T Consensus       480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~-~~  518 (594)
T 2p1m_B          480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC-SV  518 (594)
T ss_dssp             CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS-CC
T ss_pred             CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC-CC
Confidence            56666666666655321 1122445666777777766 44

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=82.40  E-value=1  Score=39.73  Aligned_cols=39  Identities=21%  Similarity=0.179  Sum_probs=26.1

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDL  225 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l  225 (232)
                      ..+++|+.|.+.++....+|.. +..+++|++|+|++| .+
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~-~l  305 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYA-LL  305 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTC-CC
T ss_pred             hccccccccCccccchhHHHHH-HhhcCCCcEEecCCC-cC
Confidence            3455666666666655666766 677777777777777 44

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=81.17  E-value=0.31  Score=43.09  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=25.4

Q ss_pred             CCCCccEEEeccCCCCC-----CChHhhcCCCCccEEEccCC
Q 047834          186 SCPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEWSRN  222 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL~~~  222 (232)
                      .+++|++|++++|.+..     ++.- ...+++|++|++++|
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~-~~~~~~L~~L~l~~~  194 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHF-PDTYTSLVSLNISCL  194 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGS-CTTCCCCCEEECTTC
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHH-hhcCCcCcEEEeccc
Confidence            57888888888886433     3332 446778888888888

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.92
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.89
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.59
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.49
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.25
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.22
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.19
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.18
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.17
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.17
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.16
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.1
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.98
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	96.89
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.78
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.68
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.52
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.45
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.39
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.14
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.0
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.62
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	94.92
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	94.07
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	93.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.04
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	87.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	84.18
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	84.02

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.37  E-value=2.6e-14  Score=116.14  Aligned_cols=71  Identities=11%  Similarity=0.042  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHhcCCchHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCCCCCcchhhHHHHhHhcCCchhHHHHHHHh
Q 047834            3 QSYSASVLCFACNSISLTLITIGSAMASIRNNPAEWENAVNELKNYPAEFPGMGDLIFPCLKFSYDHLSSETHRKCFLFC   82 (232)
Q Consensus         3 ~~~i~~~iv~~c~GlPLAl~~~g~~L~~~~~~~~~w~~~l~~L~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~   82 (232)
                      ..+++++|+++|+|+||||+++|+.|+.  ++.+.|.+..++|.+....      ++..++.+||++||++ +|.||.++
T Consensus       207 ~~~~~~~iv~~c~GlPLAl~~ig~~l~~--k~~~~~~~~~~~L~~~~~~------~v~~il~~sY~~L~~~-lk~c~~~l  277 (277)
T d2a5yb3         207 EEDVLNKTIELSSGNPATLMMFFKSCEP--KTFEKMAQLNNKLESRGLV------GVECITPYSYKSLAMA-LQRCVEVL  277 (277)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTCCS--SSHHHHHHHHHHHHHHCSS------TTCCCSSSSSSSHHHH-HHHHHHTS
T ss_pred             hHHHHHHHHHHhCCCHHHHHHHHHHhcc--CCHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcccHH-HHHHHHhC
Confidence            3568899999999999999999999988  8999999999999764333      6888999999999999 89999763

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.3e-05  Score=58.11  Aligned_cols=48  Identities=21%  Similarity=0.167  Sum_probs=43.4

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      +..+++|++|++++|+++.++...|..+++|++|||++. +|+.+|.++
T Consensus        52 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~   99 (156)
T d2ifga3          52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKT   99 (156)
T ss_dssp             SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTT
T ss_pred             hccccccCcceeeccccCCcccccccccccccceeccCC-CCcccChhh
Confidence            567899999999999999997666899999999999999 999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=1.4e-05  Score=55.77  Aligned_cols=40  Identities=18%  Similarity=0.201  Sum_probs=18.0

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +++|++|++++|.++.+|+  ++++++|++|+++++ ++..+|
T Consensus        42 l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N-~i~~~~   81 (124)
T d1dcea3          42 LRCLEVLQASDNALENVDG--VANLPRLQELLLCNN-RLQQSA   81 (124)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCCSSS
T ss_pred             hhcccccccccccccccCc--cccccccCeEECCCC-ccCCCC
Confidence            3444444444444444432  444444444444444 444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=5.1e-06  Score=58.05  Aligned_cols=44  Identities=20%  Similarity=0.223  Sum_probs=40.6

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ..+++|++|++++|.++.+|++ ++.+++|++|+++++ .|+.+|.
T Consensus        17 ~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~~   60 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVDG   60 (124)
T ss_dssp             GGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG
T ss_pred             ccCCCCCEEECCCCccCcchhh-hhhhhcccccccccc-cccccCc
Confidence            4678999999999999999998 899999999999999 9998874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.61  E-value=2.3e-05  Score=58.55  Aligned_cols=47  Identities=13%  Similarity=0.174  Sum_probs=38.9

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|+|++|.+..+|...|.+|++|++|+|+++ +|+.+|++
T Consensus        74 ~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~  120 (192)
T d1w8aa_          74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPG  120 (192)
T ss_dssp             TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTT
T ss_pred             cccccccceeeeccccccccCHHHHhCCCcccccccCCc-cccccCHH
Confidence            456778889999988888887766888999999999998 88888764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.59  E-value=5.5e-05  Score=57.75  Aligned_cols=44  Identities=16%  Similarity=0.265  Sum_probs=39.9

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|++++|.++.+|.  ++++++|++|+|++| +++.+|+
T Consensus       169 l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N-~lt~i~~  212 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN-QISDVSP  212 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTS-CCCBCGG
T ss_pred             hcccccceecccCCCccCCChh--hcCCCCCCEEECcCC-cCCCCcc
Confidence            5678999999999999999986  899999999999999 9998874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=4e-05  Score=60.12  Aligned_cols=48  Identities=21%  Similarity=0.310  Sum_probs=40.7

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQK  232 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~si  232 (232)
                      ...+++|++|++++|++..+|.+.|+.+.+|++|||+++ +|+.||+++
T Consensus       144 ~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~  191 (266)
T d1p9ag_         144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGF  191 (266)
T ss_dssp             TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             ccccccchhcccccccccccCccccccccccceeecccC-CCcccChhH
Confidence            345678999999999998888776888999999999999 899999865

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.7e-05  Score=57.90  Aligned_cols=46  Identities=33%  Similarity=0.308  Sum_probs=35.6

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|++++|.+..+|+.++..+++|++|+++++ +++.+|+
T Consensus        59 ~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N-~i~~~~~  104 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGD  104 (162)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGG
T ss_pred             cccCcchhhhhcccccccCCCccccccccccccceeccc-ccccccc
Confidence            556778888888888888887765677888888888888 7776653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.55  E-value=2.8e-05  Score=62.00  Aligned_cols=45  Identities=13%  Similarity=0.221  Sum_probs=40.7

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|+|++|+++.+|++ +.++++|++|+|+++ +|+.+|+
T Consensus       215 ~~~l~~L~~L~L~~N~L~~lp~~-l~~l~~L~~L~Ls~N-~i~~i~~  259 (305)
T d1xkua_         215 LANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNN-NISAIGS  259 (305)
T ss_dssp             GGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSS-CCCCCCT
T ss_pred             ccccccceeeecccccccccccc-cccccCCCEEECCCC-ccCccCh
Confidence            45578999999999999999998 899999999999999 9999875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4.8e-05  Score=55.39  Aligned_cols=44  Identities=25%  Similarity=0.235  Sum_probs=30.7

Q ss_pred             CCCCccEEEeccCCCCCCCh-HhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPE-WFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~-~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+++|++|++++|.+..+++ ..+.++++|++|+++++ .+..+|.
T Consensus        85 ~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~  129 (162)
T d1a9na_          85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKH  129 (162)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTT
T ss_pred             cccccccceeccccccccccccccccccccchhhcCCC-ccccccc
Confidence            46677777777777777765 22667777777777777 7766653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.25  E-value=0.00027  Score=56.04  Aligned_cols=47  Identities=23%  Similarity=0.275  Sum_probs=40.5

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|++|++++|.+..+++..|.++++|++|+++++ +++.+|.+
T Consensus        51 f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n-~l~~l~~~   97 (305)
T d1xkua_          51 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEK   97 (305)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS
T ss_pred             hhccccccccccccccccccchhhhhCCCccCEecccCC-ccCcCccc
Confidence            456789999999999988885544899999999999999 99999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.22  E-value=0.0001  Score=59.96  Aligned_cols=42  Identities=7%  Similarity=0.157  Sum_probs=33.4

Q ss_pred             CCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          185 PSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ..+++|++|++++|+++.+|+  +++|++|++|+++++ .+..+|
T Consensus        63 ~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n-~i~~i~  104 (384)
T d2omza2          63 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADIT  104 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG
T ss_pred             ccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccc-cccccc
Confidence            356788888888888888875  788888888888888 777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.19  E-value=0.00022  Score=57.98  Aligned_cols=44  Identities=14%  Similarity=0.237  Sum_probs=38.3

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|++++|+++.+|.  ++++++|++||++++ +++.+|+
T Consensus       325 l~~l~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~l~~N-~l~~l~~  368 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHN-QISDLTP  368 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCBCGG
T ss_pred             cccCCCCCEEECCCCCCCCChh--HcCCCCCCEEECCCC-cCCCChh
Confidence            4567899999999999998884  899999999999999 8888763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.18  E-value=0.00031  Score=52.91  Aligned_cols=43  Identities=19%  Similarity=0.247  Sum_probs=36.8

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ...+++|+++++++|.+..+++  +++|++|+.|+|+++ .|+.+|
T Consensus       152 ~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N-~i~~l~  194 (210)
T d1h6ta2         152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN-HISDLR  194 (210)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCBCG
T ss_pred             cccccccccccccccccccccc--ccCCCCCCEEECCCC-CCCCCh
Confidence            3456889999999999888876  889999999999999 888887

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.17  E-value=0.00021  Score=53.07  Aligned_cols=47  Identities=15%  Similarity=0.309  Sum_probs=41.3

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|+.|+|+++.+..+|...+..+.+|++|+|++. +|+.+|+.
T Consensus        50 f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~   96 (192)
T d1w8aa_          50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNK   96 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSS
T ss_pred             cCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHH
Confidence            345789999999999998877766999999999999999 99999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.17  E-value=9.8e-05  Score=58.97  Aligned_cols=45  Identities=24%  Similarity=0.257  Sum_probs=40.8

Q ss_pred             CCCCCCccEEEeccCCCC-CCChHhhcCCCCccEEEccCCCCCC-CCCC
Q 047834          184 PPSCPRLLTLLVRYASMK-GLPEWFFQSMPALRVLEWSRNGDLT-KLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~-~LP~  230 (232)
                      +..+++|++|+|++|++. .+|++ |++|++|++|||+++ +++ .+|+
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~-l~~L~~L~~L~Ls~N-~l~g~iP~  286 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFN-NLCGEIPQ  286 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSS-EEEEECCC
T ss_pred             cccccccccccCccCeecccCChH-HhCCCCCCEEECcCC-cccccCCC
Confidence            456789999999999998 89999 999999999999999 888 7886

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.16  E-value=0.00045  Score=51.45  Aligned_cols=43  Identities=16%  Similarity=0.232  Sum_probs=38.0

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +..+++|++|++.+|.+..+|+  +++|++|++|+++++ +++.+|
T Consensus       146 l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N-~i~~i~  188 (199)
T d2omxa2         146 LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN-KVSDIS  188 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG
T ss_pred             ccccccccccccccccccCCcc--ccCCCCCCEEECCCC-CCCCCc
Confidence            4567899999999999999886  899999999999999 898876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.10  E-value=5.5e-05  Score=60.50  Aligned_cols=45  Identities=13%  Similarity=0.131  Sum_probs=38.3

Q ss_pred             CCCCCCccEEEeccC-CCC-CCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYA-SMK-GLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~-~l~-~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|+|+++ ++. .+|.+ |++|.+|++|||+++ ++..+|.
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~~~  118 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIP  118 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECC
T ss_pred             HhcCccccccccccccccccccccc-cccccccchhhhccc-ccccccc
Confidence            557899999999974 665 79999 999999999999999 8877654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.98  E-value=0.00031  Score=52.41  Aligned_cols=41  Identities=7%  Similarity=0.165  Sum_probs=21.6

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      .+++|++|++++|.+..+|+  ++++++|++|+++++ .+..+|
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n-~~~~~~  100 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADIT  100 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG
T ss_pred             cCCCcCcCccccccccCccc--ccCCccccccccccc-cccccc
Confidence            34555555555555555544  455555555555555 444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.89  E-value=0.00095  Score=50.06  Aligned_cols=43  Identities=16%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      ...+++|++|++++|.++.+|.  ++++++|++|+++++ .+..+|
T Consensus        86 ~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~-~~~~~~  128 (210)
T d1h6ta2          86 LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-GISDIN  128 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-CCCCCG
T ss_pred             cccCcccccccccccccccccc--ccccccccccccccc-cccccc
Confidence            3456677777777777777764  667777777777777 555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.78  E-value=8.2e-05  Score=55.90  Aligned_cols=42  Identities=19%  Similarity=0.291  Sum_probs=26.0

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+++|++|+|++|+++.++.  +++|++|++|+|+++ .|+.+|.
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N-~i~~i~~   87 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISS--LSGMENLRILSLGRN-LIKKIEN   87 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEE-EECSCSS
T ss_pred             cccccceeECcccCCCCccc--ccCCccccChhhccc-ccccccc
Confidence            45566666666666666653  566666666666666 6666553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00067  Score=48.68  Aligned_cols=47  Identities=17%  Similarity=0.210  Sum_probs=40.8

Q ss_pred             CCCCCCccEEEeccC-CCCCCChHhhcCCCCccEEEccCCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYA-SMKGLPEWFFQSMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~-~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      +..+++|+.|.+.++ .++.+|..-|.+|.+|+.|+|+++ +|+.+|+.
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~   74 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD   74 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccc
Confidence            456789999999877 699998765899999999999999 99999764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00022  Score=51.69  Aligned_cols=42  Identities=29%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             CCCccEEEeccCCCCCCCh--HhhcCCCCccEEEccCCCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPE--WFFQSMPALRVLEWSRNGDLTKLP  229 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~--~~i~~L~~Lr~LdL~~~~~l~~LP  229 (232)
                      +++|++|+|++|+++.++.  +.++++++|++|||++. .|+.+|
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~  107 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER  107 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGG
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccch
Confidence            4445555555554444321  11344455555555555 444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.52  E-value=0.00095  Score=53.12  Aligned_cols=41  Identities=27%  Similarity=0.285  Sum_probs=22.5

Q ss_pred             CCccEEEeccCCCCCCChHhhcC-----------------CCCccEEEccCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQS-----------------MPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~-----------------L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      ++|++|++++|.++.+|.. +++                 +.+|++|+++++ .++++|+
T Consensus       284 ~~L~~L~Ls~N~l~~lp~~-~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N-~L~~lp~  341 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPAL-PPRLERLIASFNHLAEVPELPQNLKQLHVEYN-PLREFPD  341 (353)
T ss_dssp             TTCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred             CCCCEEECCCCccCccccc-cCCCCEEECCCCcCCccccccCCCCEEECcCC-cCCCCCc
Confidence            4555555555555555543 221                 245666666666 5666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0036  Score=48.37  Aligned_cols=44  Identities=30%  Similarity=0.452  Sum_probs=27.5

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      .+.+|++|.+.++.+..+|.+++..+.+|++|+++++ +++.+|.
T Consensus       122 ~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~  165 (266)
T d1p9ag_         122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPA  165 (266)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT
T ss_pred             cccccccccccccccceeccccccccccchhcccccc-cccccCc
Confidence            4455666666666666666655566666666666666 6666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.44  E-value=0.0013  Score=52.33  Aligned_cols=21  Identities=38%  Similarity=0.472  Sum_probs=17.1

Q ss_pred             CCCCccEEEccCCCCCCCCCCC
Q 047834          210 SMPALRVLEWSRNGDLTKLPMQ  231 (232)
Q Consensus       210 ~L~~Lr~LdL~~~~~l~~LP~s  231 (232)
                      .+++|++|+|++| +|+++|.+
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~~  302 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPAL  302 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCCC
T ss_pred             cCCCCCEEECCCC-ccCccccc
Confidence            3578899999998 88888865

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.39  E-value=0.0028  Score=47.79  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=38.1

Q ss_pred             CCCCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +..+++|++|.+.+|.+...+.  ++++++|++|||+++ +++.+|+
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n-~l~~l~~  190 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN-KISDISP  190 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG
T ss_pred             hccccccccccccccccccchh--hcccccceecccCCC-ccCCChh
Confidence            4556789999999998887776  899999999999999 9988763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0012  Score=51.67  Aligned_cols=42  Identities=14%  Similarity=0.203  Sum_probs=35.1

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +++++|+|++|+++.+|...|.++.+|++||++++ +++.+|.
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~   73 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDA   73 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECT
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccc-ccccccc
Confidence            46789999999999888765888999999999988 8877665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0012  Score=50.14  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=26.4

Q ss_pred             CCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834          188 PRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       188 ~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      .++++|++++|+++.+|...|.++++|++|+++++ .+..
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n-~~~~   67 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLE   67 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESC-TTCC
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccc-cccc
Confidence            36777777777777777644667777777777777 5443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0048  Score=48.03  Aligned_cols=42  Identities=19%  Similarity=0.316  Sum_probs=22.5

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKL  228 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~L  228 (232)
                      .+++|+.|++++|+++.+|...+.++++|++|+++++ ++..+
T Consensus       151 ~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N-~l~~i  192 (284)
T d1ozna_         151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHV  192 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEE
T ss_pred             cccchhhcccccCcccccchhhhccccccchhhhhhc-ccccc
Confidence            3445555555555555554443555555555555555 55444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0049  Score=46.57  Aligned_cols=35  Identities=23%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             eccCCCCCCChHhhcCCCCccEEEccCCCCCCCCCC
Q 047834          195 VRYASMKGLPEWFFQSMPALRVLEWSRNGDLTKLPM  230 (232)
Q Consensus       195 l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~LP~  230 (232)
                      +.+++++.+|...|.++.+|++|||+++ +|+.+|.
T Consensus       184 l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~  218 (242)
T d1xwdc1         184 SDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS  218 (242)
T ss_dssp             TTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCS
T ss_pred             ccccccccccHHHhcCCCCCCEEECCCC-cCCccCH
Confidence            3444666666654566666666776666 6666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=94.92  E-value=0.00066  Score=50.71  Aligned_cols=39  Identities=18%  Similarity=0.072  Sum_probs=19.0

Q ss_pred             CCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834          187 CPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      +++|++|+|++|.++.+|.. +..+++|++|+++++ +++.
T Consensus        69 l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N-~i~~  107 (198)
T d1m9la_          69 MENLRILSLGRNLIKKIENL-DAVADTLEELWISYN-QIAS  107 (198)
T ss_dssp             HTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEE-ECCC
T ss_pred             CccccChhhccccccccccc-ccccccccccccccc-cccc
Confidence            34555555555555555543 333444555555554 4443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.019  Score=44.70  Aligned_cols=36  Identities=14%  Similarity=0.047  Sum_probs=17.6

Q ss_pred             CCCCccEEEeccC-CCC-CCChHhhcCCCCccEEEccCC
Q 047834          186 SCPRLLTLLVRYA-SMK-GLPEWFFQSMPALRVLEWSRN  222 (232)
Q Consensus       186 ~l~~Lr~L~l~~~-~l~-~lp~~~i~~L~~Lr~LdL~~~  222 (232)
                      .+++|++|++++| .+. .-... ++++++|+.|++++|
T Consensus       198 ~~~~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         198 QLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             ccCcCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence            3455555555554 332 12223 455555555555555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.017  Score=44.90  Aligned_cols=39  Identities=21%  Similarity=0.138  Sum_probs=18.7

Q ss_pred             CCCCCccEEEeccC-CCCC--CChHhhcCCCCccEEEccCCCC
Q 047834          185 PSCPRLLTLLVRYA-SMKG--LPEWFFQSMPALRVLEWSRNGD  224 (232)
Q Consensus       185 ~~l~~Lr~L~l~~~-~l~~--lp~~~i~~L~~Lr~LdL~~~~~  224 (232)
                      ..+++|++|++++| ++..  +..- ..++++|++|++++|.+
T Consensus        92 ~~~~~L~~L~Ls~c~~itd~~l~~l-~~~~~~L~~L~ls~c~~  133 (284)
T d2astb2          92 AKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFD  133 (284)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTT
T ss_pred             hcCCCCcCccccccccccccccchh-hHHHHhccccccccccc
Confidence            34455555555554 3331  2221 33455566666665533

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.04  E-value=0.039  Score=39.09  Aligned_cols=41  Identities=22%  Similarity=0.079  Sum_probs=32.0

Q ss_pred             CCCCccEEEeccCCCCCCChHhhcCCCCccEEEccCCCCCCC
Q 047834          186 SCPRLLTLLVRYASMKGLPEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l~~lp~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      .+++|++|+|++|.++.+++--..+..+|+.|++++. .+..
T Consensus        89 ~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N-pl~~  129 (162)
T d1koha1          89 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN-SLSD  129 (162)
T ss_dssp             HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS-TTSS
T ss_pred             hCCcccccccccCccccchhhhhhhccccceeecCCC-CcCc
Confidence            5789999999999999888722334567999999998 6654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.88  E-value=0.089  Score=42.46  Aligned_cols=43  Identities=16%  Similarity=0.064  Sum_probs=28.7

Q ss_pred             CCCCCCccEEEeccCCCC-----CCChHhhcCCCCccEEEccCCCCCCC
Q 047834          184 PPSCPRLLTLLVRYASMK-----GLPEWFFQSMPALRVLEWSRNGDLTK  227 (232)
Q Consensus       184 ~~~l~~Lr~L~l~~~~l~-----~lp~~~i~~L~~Lr~LdL~~~~~l~~  227 (232)
                      +..+++|++|+|++|.+.     .+...+...-.+|++|+|++| .++.
T Consensus        51 L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~   98 (460)
T d1z7xw1          51 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTG   98 (460)
T ss_dssp             HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBG
T ss_pred             HhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC-Cccc
Confidence            356788999999988764     233331122347999999999 7753

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.18  E-value=0.19  Score=40.31  Aligned_cols=37  Identities=24%  Similarity=0.206  Sum_probs=22.3

Q ss_pred             CCCccEEEeccCCCCC-----CChHhhcCCCCccEEEccCCCCC
Q 047834          187 CPRLLTLLVRYASMKG-----LPEWFFQSMPALRVLEWSRNGDL  225 (232)
Q Consensus       187 l~~Lr~L~l~~~~l~~-----lp~~~i~~L~~Lr~LdL~~~~~l  225 (232)
                      .+.|++|+|++|++..     |++. +...++|++|||+++ +|
T Consensus       368 ~~~L~~L~Ls~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~N-~i  409 (460)
T d1z7xw1         368 GSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNN-CL  409 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCCCEEECCSS-SC
T ss_pred             cCCCCEEECCCCCCChHHHHHHHHH-HhcCCCCCEEECCCC-cC
Confidence            4456677777666532     4444 555666777777766 54

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=84.02  E-value=0.17  Score=39.87  Aligned_cols=15  Identities=27%  Similarity=0.244  Sum_probs=7.8

Q ss_pred             CCCCccEEEeccCCC
Q 047834          186 SCPRLLTLLVRYASM  200 (232)
Q Consensus       186 ~l~~Lr~L~l~~~~l  200 (232)
                      .+++|++|+|++|.+
T Consensus       241 ~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         241 SWPNLRELGLNDCLL  255 (344)
T ss_dssp             GCTTCCEEECTTCCC
T ss_pred             ccccchhhhhhcCcc
Confidence            445555555555544