Citrus Sinensis ID: 047843

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
LIVKVIAECMIGAKENLDENLLASFHNRSLDSFKLLTKVLSSCSKQLQTEYPEPMLLLHKALCNIVIPVQMQLKSMFEAFLKGSRLQTHVTSSPEDLPVLGISQCCRACLMKGNCKHRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESNEVMQLKEQIESLKKALANKEAQKAIAVTERTPPRTRRLSIESLSAVKTEKVINSQEKKGTKTPSVPTRARRLSLEGPRYGIKENIQVKVSDNVSQPLLGSASRQKFNQFRDAEAVSTPYQHWSSNDVSIIDANHHNNTPKSPNFSYRKRAVKSDNRPMISSLQLPNTPEPQISARNEVQIEKQ
cHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccEEEEcccccEEEEcccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHcccEEEccccccccccEEEEEEccccccEEcccccEEEEccHHHHHHHHHHHHHcccHHcccccccccccEEEEEEEEEEEcccccEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccEEEEEEEccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHcccccccccHHHHHHccccccccHHcHHHHHHHHHcccHHHccccccccccccccHHHHcccccccccccHHHHHHHHcccccccccccccccccccccccccccHHccc
cHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEEEEEcccEEEEEccccccccccEEEEEcEEEcccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHcEcccccccEcHcccEEEEEccHHHHHHHHHHccccccEcccccccccccccEEEEEEEEEcccccEEEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHcHHHHHHHHccccccEEEEEEEEccEHHHHHHHHHHHHHHHcccccEcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHccccccccHHHcccccHHHHcccccccHcHHHHHHHcccHHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccc
LIVKVIAECMIGAKENLDENLLASFHNRSLDSFKLLTKVLSSCSKQlqteypepMLLLHKALCNIVIPVQMQLKSMFEAFLKgsrlqthvtsspedlpvlgiSQCCRAclmkgnckhrQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFigedgslvildplkarkegRKVFQfnhvfgptatqddvfkdtqpLIRSVMDGYNVCIFaygqtgsgkthTMIRSCasenglnlpdatmhsVKSTADVLQLMKLGELNRAVSStainnrssrshSVLTIHvhgkdtsgsiLRSCLHLVDlagservdksevtgDRLKEAQYINKSLSCLGDVITALAqknshipyrnskLTLLLQDSLGGRAKTLMFahvspevdffgeTVSTLKFAQRVSTVELGAARVNKESNEVMQLKEQIESLKKALANKEAQKAIAvtertpprtrrlsieslsavktekvinsqekkgtktpsvptrarrlslegprygikeniqvkvsdnvsqpllgsasrqkfnqfrdaeavstpyqhwssndvsiidanhhnntpkspnfsyrkravksdnrpmisslqlpntpepqisarnEVQIEKQ
LIVKVIAECMIGAKENLDENLLASFHNRSLDSFKLLTKVLSSCSKQLQTEYPEPMLLLHKALCNIVIPVQMQLKSMFEAFLKGSRLQTHVtsspedlpvlGISQCCRACLMKGNCKHRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNViefigedgslviLDPLKARKEGRKVFQFNhvfgptatqddvfkDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSstainnrssrshSVLTIHVHgkdtsgsiLRSCLHLVDLagservdksevtgdRLKEAQYINKSLSCLGDVITALAQknshipyrnSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVElgaarvnkesneVMQLKEQIESLKKALANKEAqkaiavtertpprtrrlsieslsavktekvinsqekkgtktpsvptrarrlslegprygikeniqvkvsdNVSQPLLGSASRQKFNQFRDAEAVSTPYQHWSSNDVSIIDANhhnntpkspnfsyRKRAVKSDNRPMIsslqlpntpepqisarnevqiekq
LIVKVIAECMIGAKENLDENLLASFHNRSLDSFKLLTKVLSSCSKQLQTEYPEPMLLLHKALCNIVIPVQMQLKSMFEAFLKGSRLQTHVTSSPEDLPVLGISQCCRACLMKGNCKHRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESNEVMQLKEQIESLKKALANKEAQKAIAVTERTPPRTRRLSIESLSAVKTEKVINSQEKKGTKTPSVPTRARRLSLEGPRYGIKENIQVKVSDNVSQPLLGSASRQKFNQFRDAEAVSTPYQHWSSNDVSIIDANHHNNTPKSPNFSYRKRAVKSDNRPMISSLQLPNTPEPQISARNEVQIEKQ
*IVKVIAECMIGAKENLDENLLASFHNRSLDSFKLLTKVLSSCSKQLQTEYPEPMLLLHKALCNIVIPVQMQLKSMFEAFLKGSRLQTHVTSSPEDLPVLGISQCCRACLMKGNCKHRQLLQMQEKELVDLKDLLS*****F**LEL*****************SAALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA******************ADVLQLMKLGEL******************VLTIHVHGKDTSGSILRSCLHLVDLAGSERV****VTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGA***********************************************************************************************************************************************************************************************
***K***EC******************************************************************************************************************************************************VQEMSSAALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGS****************FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQT*****************LNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGK******LRSCLHLVDLAGS**************EAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAA**NK****VMQLKEQI******************************************************************************************************************************************************************************
LIVKVIAECMIGAKENLDENLLASFHNRSLDSFKLLTKVLSSCSKQLQTEYPEPMLLLHKALCNIVIPVQMQLKSMFEAFLKGSRLQTHVTSSPEDLPVLGISQCCRACLMKGNCKHRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESNEVMQLKEQIESLKKALANKEAQKAIAVTERTPPRTRRLSIESLSAVKTEKVIN**************RARRLSLEGPRYGIKENIQVKVSDNVSQPLLGSASRQKFNQFRDAEAVSTPYQHWSSNDVSIIDANHHNNTPKSPNFSYRKRAVKSDNRPMISSLQLPNTPEPQISARNEVQIEKQ
LIVKVIAECMIGAKENLDENLLASFHNRSLDSFKLLTKVLSSCSKQLQTEYPEPMLLLHKALCNIVIPVQMQLKSMFEAFLKGSRLQTHVTSSPEDLPVLGISQCCRACLMKGNCKHRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAG************R*K**QYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESNEVMQLKEQIESLKKALANKEA******************************************************************************************************************************************************************
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LIVKVIAECMIGAKENLDENLLASFHNRSLDSFKLLTKVLSSCSKQLQTEYPEPMLLLHKALCNIVIPVQMQLKSMFEAFLKGSRLQTHVTSSPEDLPVLGISQCCRACLMKGNCKHRQLxxxxxxxxxxxxxxxxxxxxxxxxxxxxLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRTPPRTRRLSIESLSAVKTEKVINSQEKKGTKTPSVPTRARRLSLEGPRYGIKENIQVKVSDNVSQPLLGSASRQKFNQFRDAEAVSTPYQHWSSNDVSIIDANHHNNTPKSPNFSYRKRAVKSDNRPMISSLQLPNTPEPQISARNEVQIEKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query648 2.2.26 [Sep-21-2011]
O81635987 Kinesin-4 OS=Arabidopsis no no 0.320 0.210 0.698 5e-78
P28739770 Kinesin-like protein klpA yes no 0.435 0.366 0.418 7e-62
Q92376832 Kinesin-like protein 1 OS yes no 0.470 0.366 0.364 1e-56
P28741 701 Kinesin-like protein KIF3 no no 0.388 0.359 0.394 6e-49
O35231824 Kinesin-like protein KIFC no no 0.472 0.371 0.363 5e-47
P45962598 Kinesin-like protein klp- yes no 0.518 0.561 0.333 5e-47
Q60443622 Kinesin-like protein KIFC no no 0.450 0.469 0.343 7e-47
P46873 699 Osmotic avoidance abnorma no no 0.441 0.409 0.358 2e-45
Q91WD7 886 Kinesin-like protein KIF1 no no 0.470 0.344 0.331 5e-45
Q4R628 702 Kinesin-like protein KIF3 N/A no 0.453 0.418 0.340 2e-43
>sp|O81635|ATK4_ARATH Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2 Back     alignment and function desciption
 Score =  292 bits (748), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 146/209 (69%), Positives = 175/209 (83%), Gaps = 1/209 (0%)

Query: 277 GKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSV 336
           G+T  +     S NG+N+P+A++  V ST DV+QLM LG +NRAVSSTA+N+RSSRSHS 
Sbjct: 544 GQTKRLEIRNNSHNGINVPEASLVPVSSTDDVIQLMDLGHMNRAVSSTAMNDRSSRSHSC 603

Query: 337 LTIHVHGKD-TSGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITA 395
           +T+HV G+D TSGSIL   +HLVDLAGSERVDKSEVTGDRLKEAQ+INKSLS LGDVI++
Sbjct: 604 VTVHVQGRDLTSGSILHGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVISS 663

Query: 396 LAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVEL 455
           L+QK SH+PYRNSKLT LLQDSLGG AKTLMF H+SPE D  GET+STLKFA+RV +VEL
Sbjct: 664 LSQKTSHVPYRNSKLTQLLQDSLGGSAKTLMFVHISPEPDTLGETISTLKFAERVGSVEL 723

Query: 456 GAARVNKESNEVMQLKEQIESLKKALANK 484
           GAARVNK+++EV +LKEQI +LK AL  K
Sbjct: 724 GAARVNKDNSEVKELKEQIANLKMALVRK 752
Microtubule-binding motor protein.
Arabidopsis thaliana (taxid: 3702)
>sp|P28739|KLPA_EMENI Kinesin-like protein klpA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=klpA PE=2 SV=3 Back     alignment and function description
>sp|Q92376|KLP1_SCHPO Kinesin-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=klp1 PE=2 SV=2 Back     alignment and function description
>sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A OS=Mus musculus GN=Kif3a PE=1 SV=2 Back     alignment and function description
>sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4 Back     alignment and function description
>sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 OS=Caenorhabditis elegans GN=klp-3 PE=1 SV=1 Back     alignment and function description
>sp|Q60443|KIFC1_CRIGR Kinesin-like protein KIFC1 OS=Cricetulus griseus PE=2 SV=1 Back     alignment and function description
>sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 OS=Caenorhabditis elegans GN=osm-3 PE=2 SV=4 Back     alignment and function description
>sp|Q91WD7|KI18A_MOUSE Kinesin-like protein KIF18A OS=Mus musculus GN=Kif18a PE=2 SV=1 Back     alignment and function description
>sp|Q4R628|KIF3A_MACFA Kinesin-like protein KIF3A OS=Macaca fascicularis GN=KIF3A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
255585490 987 kinesin heavy chain, putative [Ricinus c 0.834 0.548 0.593 0.0
317106707 979 JHL06B08.9 [Jatropha curcas] 0.893 0.591 0.555 0.0
224090079 924 predicted protein [Populus trichocarpa] 0.75 0.525 0.629 0.0
240255315 922 myosin and kinesin motor and CH domain-c 0.882 0.620 0.542 0.0
356503435 990 PREDICTED: kinesin-4-like [Glycine max] 0.899 0.588 0.526 1e-179
297829556 897 predicted protein [Arabidopsis lyrata su 0.847 0.612 0.525 1e-179
6056195 897 kinesin-like protein [Arabidopsis thalia 0.847 0.612 0.526 1e-179
222618085 927 hypothetical protein OsJ_01073 [Oryza sa 0.637 0.445 0.579 1e-137
218192644 1017 hypothetical protein OsI_11198 [Oryza sa 0.572 0.364 0.561 1e-126
357112610 1002 PREDICTED: kinesin-4-like [Brachypodium 0.601 0.389 0.533 1e-125
>gi|255585490|ref|XP_002533437.1| kinesin heavy chain, putative [Ricinus communis] gi|223526711|gb|EEF28944.1| kinesin heavy chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/654 (59%), Positives = 450/654 (68%), Gaps = 113/654 (17%)

Query: 70  QMQLKSMFEAFLKG-SRLQTHVTSSP-EDLPVLGISQCCRACLMKGNCKHRQLLQMQEKE 127
           Q QL+SMF+ FLK  S    H    P E L  LG S+CCRACL  GNCKHR L+QMQEKE
Sbjct: 230 QKQLESMFKDFLKKRSSSPDHSAPVPFEALSELGDSKCCRACLRNGNCKHRHLIQMQEKE 289

Query: 128 LVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDL 187
           L++LK LL+ TK EF+DL+     DL +LG QVQEMS+AALGYHRV+ ENR LYNMVQDL
Sbjct: 290 LMNLKALLTETKNEFEDLQSHFQRDLRNLGYQVQEMSAAALGYHRVLKENRNLYNMVQDL 349

Query: 188 RGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQD 247
           +GNIRVYCR+RP+   E  N I+F+G+DGSLVILDPLK ++EG+++FQFN VFGP+ATQD
Sbjct: 350 KGNIRVYCRIRPAISGEKSNAIDFVGKDGSLVILDPLKPKREGKRMFQFNQVFGPSATQD 409

Query: 248 DVFKDTQPLIRSVMDGYNVCIFAY-----GQT------GSGKTHTM-------------- 282
           DV+KDT+PLIRSVMDGYNVCIFAY     G+T        G T  M              
Sbjct: 410 DVYKDTRPLIRSVMDGYNVCIFAYGQTGSGKTYTMSGPSGGSTKDMGINYLALNDLFQIS 469

Query: 283 --------------------------------IRSCASENGLNLPDATMHSVKSTADVLQ 310
                                           IRSC+ +NG +LPDA MH V STADVL 
Sbjct: 470 KKRRDIINYDLQVQMVEIYNEQVRDLLAEDSAIRSCSGDNGFSLPDAKMHPVNSTADVLN 529

Query: 311 LMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVDKSE 370
           LMKLGELNR VS+TAINNRSSRSHS+LT+HVHGKDTSGS L SCLHLVDLAGSERVDKSE
Sbjct: 530 LMKLGELNRVVSATAINNRSSRSHSILTVHVHGKDTSGSTLHSCLHLVDLAGSERVDKSE 589

Query: 371 VTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHV 430
           VTGDRLKEAQYINKSLSCLGDVI ALAQ+NSHIPYRNSKLTLLLQDSLGG AKTLMFAHV
Sbjct: 590 VTGDRLKEAQYINKSLSCLGDVIAALAQRNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHV 649

Query: 431 SPEVDFFGETVSTLKFAQRVSTVELGAARVNKESNEVMQLKEQIESLKKALANKE----- 485
           SPE D FGETVSTLKFAQRVSTVELGAAR NKES+E+MQLKEQ+E+L+KALA+KE     
Sbjct: 650 SPEGDSFGETVSTLKFAQRVSTVELGAARANKESSEIMQLKEQVETLRKALASKEEKNTQ 709

Query: 486 ----------AQKAIAVTERTPPRTRRLSIESLSAVKTEKVINSQEKKGTKTPSVPTRAR 535
                      +K   + ERTPPR RRLSIE+ S +K++  +N  ++KG+KTPSVP R+R
Sbjct: 710 FNRMKEPRSPCEKPKEMMERTPPRLRRLSIENGSNMKSQ-TVNPIDRKGSKTPSVPARSR 768

Query: 536 RLSLEGPRYGIKENIQVKVSDNVSQPLLGSASRQKFNQFRDAEAVSTPYQHWSSNDVSII 595
           RLSLE P                                   EA S  + H S+N  S++
Sbjct: 769 RLSLEDP-----------------------------------EAQSKMFGH-SANGSSMM 792

Query: 596 DANHHNNTPKSP-NFSYRKRAVKSDNRPMISSLQLPNTPEPQISARNEVQIEKQ 648
           +     N PKSP + SY+KR VK+D+R  I  LQLP TPEPQ+ AR EVQI +Q
Sbjct: 793 EV-FRLNAPKSPTSSSYQKRMVKTDSRSQIPLLQLPMTPEPQVLARREVQIMRQ 845

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|317106707|dbj|BAJ53207.1| JHL06B08.9 [Jatropha curcas] Back     alignment and taxonomy information
>gi|224090079|ref|XP_002308934.1| predicted protein [Populus trichocarpa] gi|222854910|gb|EEE92457.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|240255315|ref|NP_187642.4| myosin and kinesin motor and CH domain-containing protein [Arabidopsis thaliana] gi|332641369|gb|AEE74890.1| myosin and kinesin motor and CH domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356503435|ref|XP_003520514.1| PREDICTED: kinesin-4-like [Glycine max] Back     alignment and taxonomy information
>gi|297829556|ref|XP_002882660.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297328500|gb|EFH58919.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|6056195|gb|AAF02812.1|AC009400_8 kinesin-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222618085|gb|EEE54217.1| hypothetical protein OsJ_01073 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218192644|gb|EEC75071.1| hypothetical protein OsI_11198 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|357112610|ref|XP_003558101.1| PREDICTED: kinesin-4-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
TAIR|locus:2076289922 AT3G10310 [Arabidopsis thalian 0.395 0.277 0.716 2.2e-170
TAIR|locus:2148543987 ATK4 "kinesin 4" [Arabidopsis 0.498 0.327 0.507 6.8e-117
TAIR|locus:21953161010 AT1G09170 [Arabidopsis thalian 0.378 0.242 0.617 1.4e-116
TAIR|locus:2061992983 AT2G47500 [Arabidopsis thalian 0.341 0.224 0.674 2.4e-116
TAIR|locus:2101645 1087 KP1 "kinesin-like protein 1" [ 0.316 0.188 0.689 5.3e-116
TAIR|locus:20278541025 AT1G73860 [Arabidopsis thalian 0.361 0.228 0.584 1.1e-107
TAIR|locus:2155095961 AT5G41310 [Arabidopsis thalian 0.300 0.202 0.647 1.5e-103
TAIR|locus:20141291140 AT1G18410 [Arabidopsis thalian 0.294 0.167 0.661 6.7e-103
TAIR|locus:20266391071 AT1G63640 [Arabidopsis thalian 0.450 0.272 0.508 1.9e-67
ASPGD|ASPL0000005109770 klpA [Emericella nidulans (tax 0.285 0.240 0.489 7.6e-61
TAIR|locus:2076289 AT3G10310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 943 (337.0 bits), Expect = 2.2e-170, Sum P(3) = 2.2e-170
 Identities = 197/275 (71%), Positives = 226/275 (82%)

Query:   283 IRSCASEN-GLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHV 341
             IR+C+S++ GL+LPDATMHSV ST DVLQLM+ GE+NRAVSST++NNRSSRSHS+  +HV
Sbjct:   481 IRTCSSDDDGLSLPDATMHSVNSTKDVLQLMEAGEVNRAVSSTSMNNRSSRSHSIFMVHV 540

Query:   342 HGKDTSGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS 401
              GKDTSG  LRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVI+ALAQKNS
Sbjct:   541 RGKDTSGGTLRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVISALAQKNS 600

Query:   402 HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVN 461
             HIPYRNSKLTLLLQDSLGG+AKTLMFAH+SPE D FGET+STLKFAQRVSTVELGAAR +
Sbjct:   601 HIPYRNSKLTLLLQDSLGGQAKTLMFAHLSPEEDSFGETISTLKFAQRVSTVELGAARAH 660

Query:   462 KESNEVMQLKEQIESLKKALANKE--------------AQKAIAVTERTPPRTRRLSIES 507
             KE+ EVM LKEQIE+LK+AL  +E                + IA TERTPPR RRLSIE+
Sbjct:   661 KETREVMHLKEQIENLKRALGTEEWNNVSNGSKEIKSPFSRPIATTERTPPRLRRLSIEN 720

Query:   508 LSAVKTEKVINSQEKKGTKTPSVPTRARRLSLEGP 542
              S+ K     N ++++G K+P    RA+ LSLEGP
Sbjct:   721 CSSTKA----NLEDRRGIKSPLASRRAQILSLEGP 751
GO:0003777 "microtubule motor activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0051567 "histone H3-K9 methylation" evidence=RCA
TAIR|locus:2148543 ATK4 "kinesin 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195316 AT1G09170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061992 AT2G47500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101645 KP1 "kinesin-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027854 AT1G73860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155095 AT5G41310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014129 AT1G18410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026639 AT1G63640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000005109 klpA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VI.1323.1
hypothetical protein (887 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
cd00106328 cd00106, KISc, Kinesin motor domain 2e-92
cd01366329 cd01366, KISc_C_terminal, Kinesin motor domain, KI 9e-82
smart00129335 smart00129, KISc, Kinesin motor, catalytic domain 6e-76
pfam00225326 pfam00225, Kinesin, Kinesin motor domain 7e-75
cd01371333 cd01371, KISc_KIF3, Kinesin motor domain, kinesins 1e-66
cd01374321 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E 2e-64
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 4e-63
cd01372341 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik 4e-55
cd01367322 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF 1e-54
COG5059568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 4e-54
cd01369325 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine 1e-52
cd01370338 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP 1e-50
cd01373337 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP 6e-50
cd01375334 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF 2e-49
cd01365356 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K 3e-48
cd01364352 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC 1e-47
cd01368345 cd01368, KISc_KIF23_like, Kinesin motor domain, KI 4e-46
cd01366329 cd01366, KISc_C_terminal, Kinesin motor domain, KI 4e-41
cd01376319 cd01376, KISc_KID_like, Kinesin motor domain, KIF2 1e-37
PLN03188 1320 PLN03188, PLN03188, kinesin-12 family protein; Pro 1e-35
smart00129335 smart00129, KISc, Kinesin motor, catalytic domain 6e-34
pfam00225326 pfam00225, Kinesin, Kinesin motor domain 9e-28
cd01369325 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine 1e-22
cd01370338 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP 1e-22
cd01364352 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC 8e-22
cd01372341 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik 1e-19
cd01365356 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K 3e-19
cd01376319 cd01376, KISc_KID_like, Kinesin motor domain, KIF2 5e-17
cd01373337 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP 1e-16
cd01375334 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF 3e-15
PLN03188 1320 PLN03188, PLN03188, kinesin-12 family protein; Pro 6e-09
COG5059568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 2e-08
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain Back     alignment and domain information 
 Score =  288 bits (740), Expect = 2e-92
 Identities = 137/327 (41%), Positives = 181/327 (55%), Gaps = 66/327 (20%)

Query: 190 NIRVYCRVRPSFRAETKNVIEFI--GEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQD 247
           NIRV  R+RP    E+K+    I   ++ ++ +  P   RK G K F F+HVF P +TQ+
Sbjct: 1   NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQE 60

Query: 248 DVFKDT-QPLIRSVMDGYNVCIFAY-----GQT----GSGKTHTMI-RSC---------- 286
           DV++ T +PL+ SV++GYN  IFAY     G+T    GS K   +I R+           
Sbjct: 61  DVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDER 120

Query: 287 ----------------------------ASENGLNL----------PDATMHSVKSTADV 308
                                            L+L             T   V S  D 
Sbjct: 121 KEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDA 180

Query: 309 LQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSG---SILRSCLHLVDLAGSER 365
           L L++ G  NR  +STA+N RSSRSH++ TIHV  ++T+    SI  S L+LVDLAGSER
Sbjct: 181 LSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSER 240

Query: 366 VDKSEVTGDRLKEAQYINKSLSCLGDVITALA--QKNSHIPYRNSKLTLLLQDSLGGRAK 423
             K+   GDRLKEA+ INKSLS LG+VI+AL+  QK  HIPYR+SKLT LLQDSLGG +K
Sbjct: 241 AKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSK 300

Query: 424 TLMFAHVSPEVDFFGETVSTLKFAQRV 450
           TLM A++SP  + + ET+STL+FA R 
Sbjct: 301 TLMIANISPSSENYDETLSTLRFASRA 327

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain Back     alignment and domain information
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional Back     alignment and domain information
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain Back     alignment and domain information
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 648
KOG0239670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 100.0
KOG4280574 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0243 1041 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 100.0
PLN03188 1320 kinesin-12 family protein; Provisional 100.0
cd01370338 KISc_KIP3_like Kinesin motor domain, KIP3-like sub 100.0
cd01373337 KISc_KLP2_like Kinesin motor domain, KLP2-like sub 100.0
KOG0240607 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] 100.0
KOG0242 675 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd01368345 KISc_KIF23_like Kinesin motor domain, KIF23-like s 100.0
cd01367322 KISc_KIF2_like Kinesin motor domain, KIF2-like gro 100.0
cd01364352 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind 100.0
cd01376319 KISc_KID_like Kinesin motor domain, KIF22/Kid-like 100.0
cd01365356 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p 100.0
cd01371333 KISc_KIF3 Kinesin motor domain, kinesins II or KIF 100.0
cd01366329 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ 100.0
cd01369325 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy 100.0
cd01374321 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like 100.0
cd01372341 KISc_KIF4 Kinesin motor domain, KIF4-like subfamil 100.0
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 100.0
cd01375334 KISc_KIF9_like Kinesin motor domain, KIF9-like sub 100.0
smart00129335 KISc Kinesin motor, catalytic domain. ATPase. Micr 100.0
cd00106328 KISc Kinesin motor domain. This catalytic (head) d 100.0
KOG0246676 consensus Kinesin-like protein [Cytoskeleton] 100.0
PF00225335 Kinesin: Kinesin motor domain; InterPro: IPR001752 100.0
KOG0244 913 consensus Kinesin-like protein [Cytoskeleton] 100.0
KOG0247 809 consensus Kinesin-like protein [Cytoskeleton] 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 100.0
cd01363186 Motor_domain Myosin and Kinesin motor domain. Thes 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 98.87
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 94.65
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 93.03
PRK06620214 hypothetical protein; Validated 92.71
PRK14086617 dnaA chromosomal replication initiation protein; P 92.02
PRK06893229 DNA replication initiation factor; Validated 91.92
PRK00149450 dnaA chromosomal replication initiation protein; R 91.64
TIGR00362405 DnaA chromosomal replication initiator protein Dna 91.59
PRK12377248 putative replication protein; Provisional 91.35
PRK14088440 dnaA chromosomal replication initiation protein; P 91.19
PRK08084235 DNA replication initiation factor; Provisional 90.98
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 90.93
PF13479213 AAA_24: AAA domain 90.67
PRK08116268 hypothetical protein; Validated 90.45
TIGR01242364 26Sp45 26S proteasome subunit P45 family. Many pro 90.32
PRK05642234 DNA replication initiation factor; Validated 90.3
PRK07952244 DNA replication protein DnaC; Validated 90.29
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 89.9
COG0593408 DnaA ATPase involved in DNA replication initiation 88.93
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 88.92
PRK08903227 DnaA regulatory inactivator Hda; Validated 88.91
PRK06835329 DNA replication protein DnaC; Validated 88.85
PRK14087450 dnaA chromosomal replication initiation protein; P 88.77
PRK03992389 proteasome-activating nucleotidase; Provisional 88.14
PRK09087226 hypothetical protein; Validated 87.62
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 87.43
PF04851184 ResIII: Type III restriction enzyme, res subunit; 87.07
TIGR02928365 orc1/cdc6 family replication initiation protein. M 87.07
smart00053240 DYNc Dynamin, GTPase. Large GTPases that mediate v 86.98
COG0556 663 UvrB Helicase subunit of the DNA excision repair c 86.86
PRK08939306 primosomal protein DnaI; Reviewed 85.27
PRK08727233 hypothetical protein; Validated 85.16
cd01850276 CDC_Septin CDC/Septin. Septins are a conserved fam 85.12
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 84.89
PRK12422445 chromosomal replication initiation protein; Provis 84.73
PRK06526254 transposase; Provisional 84.69
COG1484254 DnaC DNA replication protein [DNA replication, rec 84.64
cd01378 674 MYSc_type_I Myosin motor domain, type I myosins. M 84.53
PRK00411394 cdc6 cell division control protein 6; Reviewed 84.44
smart00242 677 MYSc Myosin. Large ATPases. ATPase; molecular moto 84.35
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 83.22
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 83.07
PRK10436462 hypothetical protein; Provisional 82.89
PRK08181269 transposase; Validated 82.81
cd01382 717 MYSc_type_VI Myosin motor domain, type VI myosins. 82.56
cd01384 674 MYSc_type_XI Myosin motor domain, plant-specific t 82.41
cd00124 679 MYSc Myosin motor domain. This catalytic (head) do 81.76
PF00063 689 Myosin_head: Myosin head (motor domain); InterPro: 81.63
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 81.35
cd01377 693 MYSc_type_II Myosin motor domain, type II myosins. 81.27
PRK06921266 hypothetical protein; Provisional 81.04
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 80.98
PF01935229 DUF87: Domain of unknown function DUF87; InterPro: 80.97
TIGR02533486 type_II_gspE general secretory pathway protein E. 80.56
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 80.32
smart00382148 AAA ATPases associated with a variety of cellular 80.16
PF12846304 AAA_10: AAA-like domain 80.12
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-79  Score=693.15  Aligned_cols=363  Identities=47%  Similarity=0.671  Sum_probs=324.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHhHHhhhhhhhcCCCeEEEE
Q 047843          119 QLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVV---NENRKLYNMVQDLRGNIRVYC  195 (648)
Q Consensus       119 ~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~err~l~N~l~elkGnIRV~v  195 (648)
                      +-++..+.++.+|+..+..++.+...+...+++.+..+..++.++......|....   .+||+|||+|+||||||||||
T Consensus       241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~C  320 (670)
T KOG0239|consen  241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFC  320 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEE
Confidence            33777778899999999999999999999999999999988888888877776655   899999999999999999999


Q ss_pred             EeCCCCcccCCc---eEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeec
Q 047843          196 RVRPSFRAETKN---VIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYG  272 (648)
Q Consensus       196 RVRP~~~~E~~~---~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYG  272 (648)
                      ||||+.+.+...   .+...++.+.+.+..|........+.|.||+||+|.++|++||.++.|+|+++|||||+||||||
T Consensus       321 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYG  400 (670)
T KOG0239|consen  321 RVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYG  400 (670)
T ss_pred             EecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEec
Confidence            999999888653   23333333557777776655555567999999999999999999999999999999999999999


Q ss_pred             ccCCCCceeeeec-c---------------------------------------------------------cCCCCccc
Q 047843          273 QTGSGKTHTMIRS-C---------------------------------------------------------ASENGLNL  294 (648)
Q Consensus       273 QTGSGKTyTMi~~-~---------------------------------------------------------~~~~g~~V  294 (648)
                      ||||||||||-|. .                                                         ..++++.|
T Consensus       401 QTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V  480 (670)
T KOG0239|consen  401 QTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMV  480 (670)
T ss_pred             ccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceec
Confidence            9999999999441 0                                                         01245789


Q ss_pred             CCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCeeeeeeEEEEcCCCcccCCccchh
Q 047843          295 PDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTG  373 (648)
Q Consensus       295 ~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~SkL~LVDLAGSER~~ks~a~G  373 (648)
                      ++++.+.|.+.+++..+++.|..+|++++|.+|++|||||+||+|+|.+.+. .+....++|+|||||||||+++++++|
T Consensus       481 ~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG  560 (670)
T KOG0239|consen  481 PLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTG  560 (670)
T ss_pred             ccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCch
Confidence            9999999999999999999999999999999999999999999999999854 677889999999999999999999999


Q ss_pred             hhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhccc
Q 047843          374 DRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV  453 (648)
Q Consensus       374 ~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I  453 (648)
                      +|++|+++||+||++||+||.||+++++||||||||||+||||||||++||+||++|||...++.||+++|+||.|++.+
T Consensus       561 ~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~  640 (670)
T KOG0239|consen  561 ERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSV  640 (670)
T ss_pred             hhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccccccchHHHHHHHHHHHHHHHHH
Q 047843          454 ELGAARVNKESNEVMQLKEQIESLKKAL  481 (648)
Q Consensus       454 ~~~~~~~~~~~~~i~~Lk~eI~~LK~~L  481 (648)
                      .+++++..........++..+..++...
T Consensus       641 ~lG~a~~~~~~~~~~~~~~~~~~~~~~~  668 (670)
T KOG0239|consen  641 ELGSARKQVSTSDDVSLKRFGQLEKLST  668 (670)
T ss_pred             ecccccccccccchhhhhhhhhhhhhhh
Confidence            9999998888887777777776666543

>KOG4280 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0242 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group Back     alignment and domain information
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>smart00129 KISc Kinesin motor, catalytic domain Back     alignment and domain information
>cd00106 KISc Kinesin motor domain Back     alignment and domain information
>KOG0246 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>KOG0244 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG0247 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01363 Motor_domain Myosin and Kinesin motor domain Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF13479 AAA_24: AAA domain Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>TIGR01242 26Sp45 26S proteasome subunit P45 family Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>smart00053 DYNc Dynamin, GTPase Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>cd01850 CDC_Septin CDC/Septin Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
2vvg_A350 Crystal Structure Of The G.Intestinalis Kinesin 2 G 3e-44
3lre_A355 Crystal Structure Analysis Of Human Kinesin-8 Motor 6e-44
2h58_A330 Crystal Structure Of The Kifc3 Motor Domain In Comp 2e-39
1f9t_A358 Crystal Structures Of Kinesin Mutants Reveal A Sign 7e-36
3kar_A346 The Motor Domain Of Kinesin-Like Protein Kar3, A Sa 7e-36
3t0q_A349 Motor Domain Structure Of The Kar3-Like Kinesin Fro 1e-35
3h4s_A386 Structure Of The Complex Of A Mitotic Kinesin With 2e-35
4etp_A403 C-Terminal Motor And Motor Homology Domain Of Kar3v 3e-35
1f9w_A347 Crystal Structures Of Mutants Reveal A Signalling P 4e-35
1f9u_A347 Crystal Structures Of Mutants Reveal A Signalling P 4e-35
1f9v_A347 Crystal Structures Of Mutants Reveal A Signalling P 5e-35
1sdm_A369 Crystal Structure Of Kinesin-Like Calmodulin Bindin 9e-35
4gkr_A371 Structure Of The C-Terminal Motor Domain Of Kar3 Fr 8e-34
3b6u_A372 Crystal Structure Of The Motor Domain Of Human Kine 9e-34
4h1g_A715 Structure Of Candida Albicans Kar3 Motor Domain Fus 1e-33
2rep_A376 Crystal Structure Of The Motor Domain Of Human Kine 5e-33
1goj_A355 Structure Of A Fast Kinesin: Implications For Atpas 6e-31
4a14_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 8e-31
3gbj_A354 Crystal Structure Of The Motor Domain Of Kinesin Ki 1e-30
2ncd_A420 Ncd (Non-Claret Disjunctional) Dimer From D. Melano 2e-30
1cz7_A406 The Crystal Structure Of A Minus-End Directed Micro 3e-30
3u06_A412 Crystal Structure Of The Kinesin-14 Ncdg347d Length 3e-30
2y5w_A365 Crystal Structure Of Drosophila Melanogaster Kinesi 6e-30
3b6v_A395 Crystal Structure Of The Motor Domain Of Human Kine 2e-29
1n6m_A409 Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY 2e-29
3l1c_A383 Kinesin-14 Protein Ncd, T436s Mutant Length = 383 4e-29
4aqv_C373 Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma 4e-29
4a1z_A368 Eg5-1 Length = 368 5e-29
3hqd_A369 Human Kinesin Eg5 Motor Domain In Complex With Ampp 5e-29
4ap0_A370 The Mitotic Kinesin Eg5 In Complex With Mg-Adp And 5e-29
1ii6_A368 Crystal Structure Of The Mitotic Kinesin Eg5 In Com 5e-29
4a28_A368 Eg5-2 Length = 368 6e-29
1x88_A359 Human Eg5 Motor Domain Bound To Mg-Adp And Monastro 6e-29
1q0b_A367 Crystal Structure Of The Motor Protein Ksp In Compl 6e-29
3zcw_A348 Eg5 - New Allosteric Binding Site Length = 348 9e-29
4atx_C340 Rigor Kinesin Motor Domain With An Ordered Neck-Lin 1e-28
1mkj_A349 Human Kinesin Motor Domain With Docked Neck Linker 1e-28
2owm_A443 Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 2e-28
1bg2_A325 Human Ubiquitous Kinesin Motor Domain Length = 325 2e-28
2xt3_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 4e-28
2wbe_C373 Kinesin-5-Tubulin Complex With Amppnp Length = 373 6e-27
3bfn_A388 Crystal Structure Of The Motor Domain Of Human Kine 8e-27
1ia0_K394 Kif1a Head-Microtubule Complex Structure In Atp-For 3e-26
3nwn_A359 Crystal Structure Of The Human Kif9 Motor Domain In 4e-26
1i5s_A367 Crystal Structure Of The Kif1a Motor Domain Complex 4e-26
1i6i_A366 Crystal Structure Of The Kif1a Motor Domain Complex 7e-26
1vfv_A366 Crystal Structure Of The Kif1a Motor Domain Complex 8e-26
1t5c_A349 Crystal Structure Of The Motor Domain Of Human Kine 1e-22
2heh_A387 Crystal Structure Of The Kif2c Motor Domain (Casp T 8e-19
3pxn_A344 Crystal Structure Of The Drosophila Kinesin Family 2e-18
3dc4_A344 Crystal Structure Of The Drosophila Kinesin Family 3e-18
1v8j_A410 The Crystal Structure Of The Minimal Functional Dom 5e-18
2gry_A420 Crystal Structure Of The Human Kif2 Motor Domain In 6e-18
3edl_D331 Kinesin13-Microtubule Ring Complex Length = 331 1e-17
1ry6_A360 Crystal Structure Of Internal Kinesin Motor Domain 3e-17
3kin_B117 Kinesin (Dimeric) From Rattus Norvegicus Length = 1 7e-14
2kin_B100 Kinesin (Monomeric) From Rattus Norvegicus Length = 7e-14
2kin_A238 Kinesin (Monomeric) From Rattus Norvegicus Length = 5e-10
2kin_A238 Kinesin (Monomeric) From Rattus Norvegicus Length = 2e-05
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 Back     alignment and structure 
Iteration: 1

 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/342 (35%), Positives = 180/342 (52%), Gaps = 70/342 (20%)
Query: 190 NIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARK---EGRKV---FQFNHV 239
           NI+V  R RP    ET+    N+I  + E  + VI+DP +  K   + +KV   F F+ V
Sbjct: 5   NIKVIVRCRPLNARETRENALNIIR-MDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV 63
Query: 240 FGPTATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM---------------- 282
           +  T+    +F+ + +PLI +V++G+N  IFAYGQTG+GKT TM                
Sbjct: 64  YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKH 123
Query: 283 ---------------------------IRSCASEN-----------GLNLPDATMHSVKS 304
                                      IR     N           G+ +   +MH V +
Sbjct: 124 LFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTT 183
Query: 305 TADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT--SGSILR-SCLHLVDLA 361
            A++  LM  G  NR V++T +N+ SSRSHS+  + +   +   +  ++R   L+LVDLA
Sbjct: 184 AAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLA 243
Query: 362 GSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGR 421
           GSER  K+  TG+ L E   IN SLS LG VI+ L +  +HIPYR+SKLT LLQDSLGG 
Sbjct: 244 GSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGN 303
Query: 422 AKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKE 463
           +KTLM A++SP    + ET+STL++A R   ++    R+N++
Sbjct: 304 SKTLMCANISPASTNYDETMSTLRYADRAKQIK-NKPRINED 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 Back     alignment and structure
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 Back     alignment and structure
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 Back     alignment and structure
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 Back     alignment and structure
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 Back     alignment and structure
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 Back     alignment and structure
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 Back     alignment and structure
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 Back     alignment and structure
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 Back     alignment and structure
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 Back     alignment and structure
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 Back     alignment and structure
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 Back     alignment and structure
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 Back     alignment and structure
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 Back     alignment and structure
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 Back     alignment and structure
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 Back     alignment and structure
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 Back     alignment and structure
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 Back     alignment and structure
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 Back     alignment and structure
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 Back     alignment and structure
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 Back     alignment and structure
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 Back     alignment and structure
>pdb|4A1Z|A Chain A, Eg5-1 Length = 368 Back     alignment and structure
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 Back     alignment and structure
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 Back     alignment and structure
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 Back     alignment and structure
>pdb|4A28|A Chain A, Eg5-2 Length = 368 Back     alignment and structure
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 Back     alignment and structure
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 Back     alignment and structure
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 Back     alignment and structure
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 Back     alignment and structure
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 Back     alignment and structure
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 Back     alignment and structure
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 Back     alignment and structure
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 Back     alignment and structure
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 Back     alignment and structure
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 Back     alignment and structure
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 Back     alignment and structure
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 Back     alignment and structure
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 Back     alignment and structure
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 Back     alignment and structure
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 Back     alignment and structure
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 Back     alignment and structure
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 Back     alignment and structure
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 Back     alignment and structure
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 Back     alignment and structure
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 Back     alignment and structure
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 Back     alignment and structure
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 Back     alignment and structure
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 Back     alignment and structure
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 Back     alignment and structure
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 Back     alignment and structure
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 1e-145
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 1e-130
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 1e-128
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 1e-109
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 1e-105
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 5e-44
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 1e-104
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 1e-101
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 1e-97
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 2e-43
3u06_A412 Protein claret segregational; motor domain, stalk 7e-97
3u06_A412 Protein claret segregational; motor domain, stalk 3e-59
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 1e-94
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 5e-93
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 2e-46
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 4e-89
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 3e-77
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 8e-77
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 1e-30
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 1e-76
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 3e-28
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 1e-76
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 3e-32
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 2e-74
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 7e-30
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 5e-72
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 2e-33
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 1e-71
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 5e-30
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 1e-70
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 7e-31
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 2e-70
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 4e-29
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 1e-68
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 2e-27
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 2e-68
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 1e-28
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 7e-66
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 9e-27
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 8e-62
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 1e-29
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 2e-61
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 1e-28
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 3e-32
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 2e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 Back     alignment and structure
 Score =  425 bits (1095), Expect = e-145
 Identities = 132/408 (32%), Positives = 192/408 (47%), Gaps = 81/408 (19%)

Query: 126 KELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQ 185
            ++  LK+ ++  K++       L   ++D    ++E++       +     R L+N +Q
Sbjct: 3   SKIAALKEKIAALKEKIA----ALKEKIKDTELGMKELNEI---LIKEETVRRTLHNELQ 55

Query: 186 DLRGNIRVYCRVRPSFRAETKN------VIEFIGEDGSLVILDPLKARKEGRKVFQFNHV 239
           +LRGNIRVY R+RP+ +    +      V EF    G   +             F+F+ +
Sbjct: 56  ELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKI 115

Query: 240 FGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM----------------- 282
           F    T  DVFK+   L++S +DGYNV IFAYGQTGSGKT TM                 
Sbjct: 116 FDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFN 175

Query: 283 -------------------------IR---SCASENGLNLPDATMHSVKSTADVLQLMKL 314
                                    I       + N  +      H ++   +       
Sbjct: 176 WINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT 235

Query: 315 GELNRAVSST---------AINNRS----------SRSHSVLTIHVHGKDT-SGSILRSC 354
              +  + S          A   RS          SRSHS+  IH+ G +  +G+     
Sbjct: 236 NVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGT 295

Query: 355 LHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS---HIPYRNSKLT 411
           L+LVDLAGSER++ S+V GDRL+E Q INKSLS LGDVI AL Q +S   HIP+RNSKLT
Sbjct: 296 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLT 355

Query: 412 LLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAAR 459
            LLQ SL G +KTLMF ++SP      ET+++L+FA +V++  L + +
Sbjct: 356 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSRK 403
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 100.0
3u06_A412 Protein claret segregational; motor domain, stalk 100.0
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 100.0
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 100.0
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 100.0
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 100.0
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 100.0
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 100.0
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 100.0
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 100.0
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 100.0
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 100.0
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 100.0
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 100.0
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 100.0
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 100.0
3nwn_A359 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 100.0
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 100.0
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 100.0
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 100.0
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 100.0
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 100.0
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 100.0
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 100.0
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 100.0
4h1g_A715 Maltose binding protein-cakar3 motor domain fusio; 100.0
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 99.95
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 99.94
2o0a_A298 S.cerevisiae chromosome XVI reading frame ORF YPL2 99.9
4etp_B333 Spindle POLE BODY-associated protein VIK1; kinesin 98.06
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 95.02
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 94.3
2qgz_A308 Helicase loader, putative primosome component; str 92.65
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 87.61
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 87.41
4gkp_A275 Spindle POLE BODY-associated protein VIK1; kinesin 87.16
3bos_A242 Putative DNA replication factor; P-loop containing 87.15
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 86.66
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 85.62
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 85.26
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 85.07
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 84.19
1g8p_A350 Magnesium-chelatase 38 kDa subunit; parallel beta 83.76
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 83.53
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 83.51
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 82.34
2r62_A268 Cell division protease FTSH homolog; ATPase domain 82.33
2v1u_A387 Cell division control protein 6 homolog; DNA repli 81.5
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 81.47
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 81.28
2kjq_A149 DNAA-related protein; solution structure, NESG, st 80.83
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.3e-80  Score=670.83  Aligned_cols=289  Identities=45%  Similarity=0.664  Sum_probs=241.0

Q ss_pred             hhhhHHHHHhHHhhhhhhhcCCCeEEEEEeCCCCcc-cCC--ceEEEEc---CCC--eEEEeCCCccccCCCeEEEccee
Q 047843          168 LGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRA-ETK--NVIEFIG---EDG--SLVILDPLKARKEGRKVFQFNHV  239 (648)
Q Consensus       168 ~~~~~~~~err~l~N~l~elkGnIRV~vRVRP~~~~-E~~--~~i~~~~---~d~--~vvi~~p~~~~~~~~k~F~FD~V  239 (648)
                      ..|.++..+||+|||+++|++|||||||||||+... |..  ..+.+..   ..+  .+.+..+..  ....+.|.||+|
T Consensus        38 ~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~F~FD~V  115 (403)
T 4etp_A           38 EILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN--TAQVHEFKFDKI  115 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSS--SCEEEEEEESEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCC--CcCceEEEcCEE
Confidence            346677789999999999999999999999999866 322  2333321   111  223322211  122578999999


Q ss_pred             eCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecc---------------------------------
Q 047843          240 FGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC---------------------------------  286 (648)
Q Consensus       240 F~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~---------------------------------  286 (648)
                      |+++++|++||+.+.|+|+++++|||+||||||||||||||||++..                                 
T Consensus       116 F~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E  195 (403)
T 4etp_A          116 FDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIE  195 (403)
T ss_dssp             ECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             ECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEE
Confidence            99999999999999999999999999999999999999999992210                                 


Q ss_pred             -------------------------------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceE
Q 047843          287 -------------------------------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHS  335 (648)
Q Consensus       287 -------------------------------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~  335 (648)
                                                     ...+|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+
T Consensus       196 IYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~  275 (403)
T 4etp_A          196 IYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHS  275 (403)
T ss_dssp             EETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEE
T ss_pred             EecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCccc
Confidence                                           0123578999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEeeC-CCCeeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCC---CCCcCCCccc
Q 047843          336 VLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS---HIPYRNSKLT  411 (648)
Q Consensus       336 IftI~V~~~~~-~~~~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~---hIPYRdSKLT  411 (648)
                      ||+|+|.+.+. .+....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.||+++..   ||||||||||
T Consensus       276 if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT  355 (403)
T 4etp_A          276 IFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLT  355 (403)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHH
T ss_pred             EEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHH
Confidence            99999998765 4556789999999999999999999999999999999999999999999987654   9999999999


Q ss_pred             cccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhcccccCcc
Q 047843          412 LLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAA  458 (648)
Q Consensus       412 rLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~  458 (648)
                      +||||||||||+|+||+||||+..+++||++||+||+||+.|++++.
T Consensus       356 ~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r  402 (403)
T 4etp_A          356 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR  402 (403)
T ss_dssp             HHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence            99999999999999999999999999999999999999999998763
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Back     alignment and structure
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 648
d1sdma_364 c.37.1.9 (A:) Kinesin heavy chain-like protein {Po 5e-62
d2ncda_368 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 3e-59
d1bg2a_323 c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId 8e-46
d1bg2a_323 c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId 7e-20
d1goja_354 c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 5e-45
d1goja_354 c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 6e-20
d1x88a1345 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), 2e-44
d1x88a1345 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), 6e-21
d1f9va_342 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 1e-43
d1f9va_342 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 3e-19
d2zfia1349 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), 3e-43
d2zfia1349 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), 3e-16
d1v8ka_362 c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c 5e-43
d1v8ka_362 c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c 1e-18
d1ry6a_330 c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu 7e-42
d1ry6a_330 c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu 1e-18
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  208 bits (529), Expect = 5e-62
 Identities = 116/363 (31%), Positives = 173/363 (47%), Gaps = 69/363 (19%)

Query: 191 IRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQ 246
           IRVYCR+RP    E     +N I  + E     +      + +  K   ++ VF   ATQ
Sbjct: 2   IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHL-----WKDDKAKQHMYDRVFDGNATQ 56

Query: 247 DDVFKDTQPLIRSVMDGYNVCI---------FAYGQTGSGKTHTMIRSCASE-------- 289
           DDVF+DT+ L++S +DGYNVCI           +   G+     +     SE        
Sbjct: 57  DDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKD 116

Query: 290 -----------------------------------------NGLNLPDATMHSVKSTADV 308
                                                      +++ + T+ S+ +  ++
Sbjct: 117 SNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEEL 176

Query: 309 LQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSC-LHLVDLAGSERVD 367
             +++ G   R  + T +N +SSRSH ++++ +   +     +    L  VDLAGSERV 
Sbjct: 177 KTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVK 236

Query: 368 KSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMF 427
           KS   G++LKEAQ INKSLS LGDVI+AL+  N HIPYRN KLT+L+ DSLGG AKTLMF
Sbjct: 237 KSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMF 296

Query: 428 AHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESNEVMQLKEQIESLKKALANKEAQ 487
            ++SP      ET ++L +A RV ++       N  S EV +LK+ +   K+    K   
Sbjct: 297 VNISPAESNLDETHNSLTYASRVRSIVND-PSKNVSSKEVARLKKLVSYWKEQAGRKGDD 355

Query: 488 KAI 490
           + +
Sbjct: 356 EEL 358
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 Back     information, alignment and structure
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
d2ncda_368 Kinesin motor Ncd (non-claret disjunctional) {Frui 100.0
d1sdma_364 Kinesin heavy chain-like protein {Potato (Solanum 100.0
d1x88a1345 Kinesin {Human (Homo sapiens), mitotic kinesin eg5 100.0
d1v8ka_362 Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 100.0
d1f9va_342 Kinesin motor Ncd (non-claret disjunctional) {Bake 100.0
d1goja_354 Kinesin {Neurospora crassa [TaxId: 5141]} 100.0
d1bg2a_323 Kinesin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2zfia1349 Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 100.0
d1ry6a_330 Kinesin {Malaria parasite (Plasmodium falciparum) 100.0
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 94.84
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 90.65
d1j8yf2211 GTPase domain of the signal sequence recognition p 90.6
d1kk8a2 789 Myosin S1, motor domain {Bay scallop (Aequipecten 90.32
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 89.61
d1br2a2 710 Myosin S1, motor domain {Chicken (Gallus gallus), 88.7
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 88.2
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 87.69
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 87.1
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 87.05
d2mysa2 794 Myosin S1, motor domain {Chicken (Gallus gallus), 86.77
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 86.18
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 84.68
d1lkxa_ 684 Myosin S1, motor domain {Dictyostelium discoideum, 83.06
d1d0xa2 712 Myosin S1, motor domain {Dictyostelium discoideum 82.83
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 81.79
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 80.95
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 80.81
d1w7ja2 730 Myosin S1, motor domain {Chicken (Gallus gallus), 80.49
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 80.06
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=1.5e-70  Score=582.04  Aligned_cols=275  Identities=45%  Similarity=0.693  Sum_probs=232.7

Q ss_pred             HHhHHhhhhhhhcCCCeEEEEEeCCCCcccCC--ceEEEEcCCCeEEEeCCCc--cccCCCeEEEcceeeCCCCChhhHH
Q 047843          175 NENRKLYNMVQDLRGNIRVYCRVRPSFRAETK--NVIEFIGEDGSLVILDPLK--ARKEGRKVFQFNHVFGPTATQDDVF  250 (648)
Q Consensus       175 ~err~l~N~l~elkGnIRV~vRVRP~~~~E~~--~~i~~~~~d~~vvi~~p~~--~~~~~~k~F~FD~VF~~~asQeeVf  250 (648)
                      .+||+|||+|.|+||||||||||||+.+.|..  .++....++..+.+..+..  ....+.+.|.||+||+++++|++||
T Consensus        31 ~~~~~l~~~~~~~~gnIkV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy  110 (368)
T d2ncda_          31 MERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIF  110 (368)
T ss_dssp             HHHHHHHHHHHHHHCSEEEEEEECCCCGGGTTSCBCEEEEETTTEEEEECSCHHHHTTTCCCEEECSEEECTTCCHHHHH
T ss_pred             HHHHHHHhHHHHhcCCEEEEEEeCCCCchhcCCCCcEEEeCCCCeEEEccCCccccCCcCceeeECCeEECCCCCccchH
Confidence            45889999999999999999999999987753  2233333444454443322  1223467999999999999999999


Q ss_pred             hchHHHHHHHHcCcceEEEeecccCCCCceeeeecc--------------------------------------------
Q 047843          251 KDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC--------------------------------------------  286 (648)
Q Consensus       251 ~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~--------------------------------------------  286 (648)
                      +.+.|+|+++++|||+||||||||||||||||+|..                                            
T Consensus       111 ~~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DL  190 (368)
T d2ncda_         111 EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDL  190 (368)
T ss_dssp             TTTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEESSSCEEET
T ss_pred             HHHHHHHHHHhcccceeEEeeccCCCccceEecccccccchhhHHHHHHhhhhhhhccccccceEEEEEEEEecceeecc
Confidence            878999999999999999999999999999993310                                            


Q ss_pred             --------------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC-CCee
Q 047843          287 --------------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS-GSIL  351 (648)
Q Consensus       287 --------------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~-~~~~  351 (648)
                                    ...++++++|++++.|.+++++..++..|..+|.++.|.+|.+|||||+||+|+|...+.. +...
T Consensus       191 L~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~~~~~~  270 (368)
T d2ncda_         191 LSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS  270 (368)
T ss_dssp             TCSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCCSSSCTTTTTTCEEEEEEEEEEECTTSCCEE
T ss_pred             cccccccccceeeccccccccccccceeccCCHHHHHHHHHHHHhhcccccccccccccccceEEEEEEEEEecCCCceE
Confidence                          1135678899999999999999999999999999999999999999999999999987754 4567


Q ss_pred             eeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecC
Q 047843          352 RSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVS  431 (648)
Q Consensus       352 ~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~IS  431 (648)
                      .|+|+||||||+|+...    +.+++|+.+||+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||+|||
T Consensus       271 ~s~l~~VDLAGse~~~~----~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPyR~SkLT~lL~dsLggns~t~mI~~is  346 (368)
T d2ncda_         271 VGSINLVDLAGSESPKT----STRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS  346 (368)
T ss_dssp             EEEEEEEECCCCCCC--------------CTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGSSSSCEEEEEEEEC
T ss_pred             eeeeeeeeeccccccch----hhhhcccccchhhHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHHhcCCCCeEEEEEEEC
Confidence            89999999999998654    57899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCHHHHHHHHHHHHHhccc
Q 047843          432 PEVDFFGETVSTLKFAQRVSTV  453 (648)
Q Consensus       432 Ps~~~~eETLsTLrFA~Rak~I  453 (648)
                      |+..+++||++||+||+||+++
T Consensus       347 p~~~~~~eTl~TL~fa~rak~~  368 (368)
T d2ncda_         347 PFQDCFQESVKSLRFAASVNSC  368 (368)
T ss_dssp             CBGGGHHHHHHHHHHHHHHTTC
T ss_pred             CChhhHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999864
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Back     information, alignment and structure
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure