Citrus Sinensis ID: 047859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
LNSNSNKAYGSIHTTNFKSFRVLYRYSAKEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDPQRSYGSDDKSIKVKLPTLNATEEHLMACK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEccccccEEEEEccccccccccccccccccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEcccccEEEEEEEEEcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccHHHHHccccccccEEEEEEccccccEEEEEcccccccccccccccccccccccHHHHHccc
Coil and Loop (DISEMBL)
lnsnsnkaygsihttnFKSFRVLYRYsakeeddndgencsfDEAVALFNERayykchdcleslwytaeeptrTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLrkmnlrsgpfhefENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYaagqqlyhlesdhnqimyivfdpqrsygsddksikvklptlnaTEEHLMACK
Flexible Loop (DISEMBL)
lnsnsnkaygsihttnfksfRVLYRYSAKeeddndgenCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDPQRSYGSDDKSIKVklptlnateehlmack
Low Complexity Region (SEG)
LNSNSNKAYGSIHTTNFKSFRVLYRYSAKEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDPQRSYGSDDKSIKVKLPTLNATEEHLMACK
Disordered region (IsUnstruct)
**********SIHTTNFKSFRVLYRYSA*********NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDP*****************************
Disordered Region (DISOPRED)
**************T************************SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVF******************TLNATEEHLMAC*
Disordered Region (DISEMBL)
********YGSIHTTNFKSFRVLYRYSA*********NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDPQRSYGSDDKSIKVKLPTLNATEEHLMACK
Disordered Region (DISPRO)
*****NKAYGSIHTTNFKSFRVLYRYSAKEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDPQR*********KVKLPTLNATEEHLMACK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LNSNSNKAYGSIHTTNFKSFRVLYRYSAKEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDPQRSYGSDDKSIKVKLPTLNATEEHLMACK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
225440274	250	PREDICTED: uncharacterized protein LOC10	0.925	0.792	0.67	2e-76
224089857	255	predicted protein [Populus trichocarpa]	0.976	0.819	0.647	5e-74
147807424	255	hypothetical protein VITISV_012853 [Viti	0.934	0.784	0.671	5e-71
255565374	253	conserved hypothetical protein [Ricinus	0.925	0.782	0.671	1e-70
357509113	252	hypothetical protein MTR_7g088210 [Medic	0.953	0.809	0.655	6e-67
15226837	261	uncharacterized protein [Arabidopsis tha	0.915	0.750	0.585	4e-63
363814547	248	uncharacterized protein LOC100785613 [Gl	0.789	0.681	0.682	8e-62
297827749	261	hypothetical protein ARALYDRAFT_483180 [	0.794	0.651	0.653	4e-61
449437650	247	PREDICTED: uncharacterized protein LOC10	0.915	0.793	0.577	5e-60
115483975	275	Os11g0130200 [Oryza sativa Japonica Grou	0.789	0.614	0.593	1e-55

>gi|225440274|ref|XP_002278905.1| PREDICTED: uncharacterized protein LOC100267181 [Vitis vinifera] gi|297741746|emb|CBI32878.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 162/200 (81%), Gaps = 2/200 (1%)

Query: 13  HTTNFKSFRVLYRYSAKEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTR 72
           HT+ F    + YR+SA E+++ D   C+FD+AVALFN R YY+CHD LE +W  AE+P R
Sbjct: 49  HTSTFHLLPISYRFSAVEDENED--ECNFDDAVALFNSRDYYRCHDFLEEIWNRAEDPVR 106

Query: 73  TLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFIY 132
           TL+HG+LQCAVG +HLFNQNH+GAMMELGEGL KLRKMN  +GPF +FE EISA LEFIY
Sbjct: 107 TLVHGILQCAVGLHHLFNQNHRGAMMELGEGLCKLRKMNFETGPFLQFEQEISAVLEFIY 166

Query: 133 RTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDPQRSYGSD 192
           +TQ+ELAAC DD C+AMDQSERSYQLLG Y AGQ+LYHLE D N+I+YIVF P+RS G+ 
Sbjct: 167 QTQLELAACTDDFCIAMDQSERSYQLLGGYGAGQRLYHLEGDPNEIVYIVFSPERSQGTG 226

Query: 193 DKSIKVKLPTLNATEEHLMA 212
           +   +VKLP LNATEE+LMA
Sbjct: 227 ETPRRVKLPILNATEEYLMA 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089857|ref|XP_002308839.1| predicted protein [Populus trichocarpa] gi|222854815|gb|EEE92362.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (722), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/221 (64%), Positives = 169/221 (76%), Gaps = 12/221 (5%)

Query: 1   LNSNSNKAYGSIHTTNFK---------SFRVLYRYSAKEEDDNDGENCSFDEAVALFNER 51
            +S S +A+  + ++ FK         SFR+ YRY + E+D    ENCSF+EA ALFN+R
Sbjct: 34  FSSLSKRAHHPLVSSIFKQDTTRKYSTSFRISYRYYSVEDDGE--ENCSFEEAAALFNKR 91

Query: 52  AYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMN 111
            YYKCHD LE+LW  AEEPTRTL HG+LQCAVGF+HLFNQNHKGAMMELGEGL KL++M+
Sbjct: 92  EYYKCHDVLEALWIKAEEPTRTLFHGILQCAVGFHHLFNQNHKGAMMELGEGLCKLKRMD 151

Query: 112 LRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHL 171
             SGPFH+FE EISAAL+FIY TQIELAAC DD+CLAM QSERSYQLLG YAAGQ LY L
Sbjct: 152 FESGPFHQFEQEISAALDFIYLTQIELAACGDDLCLAMYQSERSYQLLGAYAAGQHLYRL 211

Query: 172 ESDHNQIMYIVFDPQRSYGSDDKSIKVKLPTLNATEEHLMA 212
           +++ N   YIVF PQ S  S +   KVKLPTLNA +EHL+A
Sbjct: 212 QNNPNDGTYIVFRPQISSYSGEPQ-KVKLPTLNAADEHLIA 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807424|emb|CAN70760.1| hypothetical protein VITISV_012853 [Vitis vinifera]

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 135/201 (67%), Positives = 164/201 (81%), Gaps = 1/201 (0%)

Query: 13  HTTNFKSFRVLYRYSA-KEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPT 71
           HT+ F    + YR+SA ++EDD+B + C FD+AVALFN R YY+CHD LE +W  AE+P 
Sbjct: 51  HTSTFHLLPISYRFSAVEDEDDDBEDECXFDDAVALFNXRDYYRCHDFLEEIWNRAEDPV 110

Query: 72  RTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFI 131
           RTL+HG+LQCAVG +HLFNQNH+GAMMELGEGL KLRKMN  +GPF +FE EISA LEFI
Sbjct: 111 RTLVHGILQCAVGLHHLFNQNHRGAMMELGEGLCKLRKMNFETGPFLQFEQEISAVLEFI 170

Query: 132 YRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDPQRSYGS 191
           Y+TQ+ELAAC DD C+AMDQSERSYQLLG Y AGQ+LYHLE D N+I+YIVF P+RS G+
Sbjct: 171 YQTQLELAACTDDFCIAMDQSERSYQLLGGYGAGQRLYHLEGDPNEIVYIVFSPERSQGT 230

Query: 192 DDKSIKVKLPTLNATEEHLMA 212
            +   +VKLP LNATEE+LMA
Sbjct: 231 GETPRRVKLPILNATEEYLMA 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565374|ref|XP_002523678.1| conserved hypothetical protein [Ricinus communis] gi|223537078|gb|EEF38713.1| conserved hypothetical protein [Ricinus communis]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 137/204 (67%), Positives = 160/204 (78%), Gaps = 6/204 (2%)

Query: 10  GSIHTTNFKSFRVLYRYSAKEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEE 69
             IHT  F   R+ YRY  ++ED+ D +  SF+EAVALFN+  YYKCHD LE+LW  AE+
Sbjct: 52  APIHTLRF---RLSYRYHYQDEDE-DEDGFSFNEAVALFNKMEYYKCHDFLEALWIKAED 107

Query: 70  PTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALE 129
           PTRTLIHG+LQCAVGF+HLFNQNHKGAMMELGEGL KLRK++  SGPFH+FE EISA L+
Sbjct: 108 PTRTLIHGILQCAVGFHHLFNQNHKGAMMELGEGLCKLRKIDFESGPFHQFEQEISAVLQ 167

Query: 130 FIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDH-NQIMYIVFDPQRS 188
           FIY+TQIELAAC+DD+C+AMDQ+ERSYQLLG YAAGQ  Y LE+D  +  M IVF P R 
Sbjct: 168 FIYQTQIELAACSDDLCVAMDQTERSYQLLGGYAAGQLCYSLENDPVDDGMNIVFCPPRP 227

Query: 189 YGSDDKSIKVKLPTLNATEEHLMA 212
           Y S D   +VKLP L A EEHLMA
Sbjct: 228 YNSGDPP-RVKLPILKAAEEHLMA 250

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509113|ref|XP_003624845.1| hypothetical protein MTR_7g088210 [Medicago truncatula] gi|87162857|gb|ABD28652.1| Protein of unknown function DUF309 [Medicago truncatula] gi|355499860|gb|AES81063.1| hypothetical protein MTR_7g088210 [Medicago truncatula]

 Score =  259 bits (661), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 135/206 (65%), Positives = 164/206 (79%), Gaps = 2/206 (0%)

Query: 7   KAYGSIHTTNFKSFRVLYRYSAKEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYT 66
           K + +  + N K F V YRY  KEED+ + E+ +FDEAV LFN   YYKCHD LESLW+ 
Sbjct: 45  KQHLNFKSNNSKLFVVSYRYFTKEEDEEEEEH-NFDEAVTLFNGGEYYKCHDYLESLWHN 103

Query: 67  AEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISA 126
           AEEP+RTLIHG+LQCAVGF+HLFNQNHKGAMMELGEGL KLRKM   +GPF +FE +ISA
Sbjct: 104 AEEPSRTLIHGILQCAVGFHHLFNQNHKGAMMELGEGLCKLRKMEFPNGPFLKFEKDISA 163

Query: 127 ALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDPQ 186
            LEFIY+TQIELAAC+DDIC+AMDQSERSYQL+G+YAAG+++Y LE   +  +YIVF PQ
Sbjct: 164 VLEFIYQTQIELAACSDDICVAMDQSERSYQLMGEYAAGKRVYDLELGRDASVYIVFCPQ 223

Query: 187 RSYGSDDKSIKVKLPTLNATEEHLMA 212
            S G+ + + + KLP LNAT EHL+A
Sbjct: 224 GSNGATE-APRAKLPRLNATSEHLVA 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226837|ref|NP_181645.1| uncharacterized protein [Arabidopsis thaliana] gi|3402705|gb|AAD11999.1| hypothetical protein [Arabidopsis thaliana] gi|38564300|gb|AAR23729.1| At2g41120 [Arabidopsis thaliana] gi|38604032|gb|AAR24759.1| At2g41120 [Arabidopsis thaliana] gi|330254840|gb|AEC09934.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 127/217 (58%), Positives = 156/217 (71%), Gaps = 21/217 (9%)

Query: 14  TTNFKSFRVLY-RYSAKEEDDNDGEN-----------CSFDEAVALFNERAYYKCHDCLE 61
           +T F S RV + R S    +D+ GE+            SF+EAV LFN+R YYK HD LE
Sbjct: 41  STKFSSIRVRFSRRSIVRYNDHAGEDEEDSDEDKEEYWSFEEAVTLFNKRDYYKSHDALE 100

Query: 62  SLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFE 121
           +LW  AEEPTRTLIHG+LQCAVGF+HLFN NHKGAMMELGEG+ KLRKMN   GPFHEFE
Sbjct: 101 ALWIQAEEPTRTLIHGILQCAVGFHHLFNNNHKGAMMELGEGVCKLRKMNFEDGPFHEFE 160

Query: 122 NEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLES--DHNQIM 179
            ++SA LEF+Y+TQ+ELAAC++D+CL MDQS+RSYQLLG YAAG+ +Y LE+  D N  M
Sbjct: 161 RDVSAVLEFVYQTQLELAACSEDMCLTMDQSDRSYQLLGGYAAGESIYSLETVLDFNNGM 220

Query: 180 ----YIVFDPQRSYGSDDKSIKVKLPTLNATEEHLMA 212
                I+F P     S  +  +VKLPTL AT++HL+A
Sbjct: 221 SETTSILFSPLH---SSSEPTRVKLPTLTATDKHLLA 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814547|ref|NP_001242712.1| uncharacterized protein LOC100785613 [Glycine max] gi|255647305|gb|ACU24119.1| unknown [Glycine max]

 Score =  242 bits (617), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 116/170 (68%), Positives = 141/170 (82%), Gaps = 1/170 (0%)

Query: 44  AVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEG 103
           AVALFN   YYKCHD LE+LW  AEEPTRTLIHG+LQCAVGF+HLFNQNH+GAMM+LGEG
Sbjct: 77  AVALFNGGEYYKCHDYLEALWLNAEEPTRTLIHGILQCAVGFHHLFNQNHRGAMMQLGEG 136

Query: 104 LGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYA 163
           L KLRKM   +GPF +FE +ISA L+FIY+TQIELAAC++D+C+AMD+SERSYQLLG+YA
Sbjct: 137 LCKLRKMEFSNGPFQKFEKDISAVLDFIYQTQIELAACSEDMCVAMDRSERSYQLLGEYA 196

Query: 164 AGQQLYHLESDHNQIMYIVFDPQRS-YGSDDKSIKVKLPTLNATEEHLMA 212
           +GQ++Y LE   +  +YIVF PQ S  G   ++ +VKLPTL AT EHL+A
Sbjct: 197 SGQRVYDLELCSDASVYIVFCPQGSNNGGATEAPRVKLPTLKATTEHLVA 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827749|ref|XP_002881757.1| hypothetical protein ARALYDRAFT_483180 [Arabidopsis lyrata subsp. lyrata] gi|297327596|gb|EFH58016.1| hypothetical protein ARALYDRAFT_483180 [Arabidopsis lyrata subsp. lyrata]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 117/179 (65%), Positives = 141/179 (78%), Gaps = 9/179 (5%)

Query: 40  SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMME 99
           SF+EAV LFN+R YYK HD LE+LW  AEEPTRTLIHG+LQCAVGF+HLFN NHKGAMME
Sbjct: 79  SFEEAVTLFNKRDYYKSHDALEALWIQAEEPTRTLIHGILQCAVGFHHLFNNNHKGAMME 138

Query: 100 LGEGLGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLL 159
           LGEG+ KLRKMN   GPFHEFE ++SA LEF+Y+TQ+ELAAC++D+CL MDQS+RSYQLL
Sbjct: 139 LGEGVCKLRKMNFEDGPFHEFERDVSAVLEFVYQTQLELAACSEDMCLTMDQSDRSYQLL 198

Query: 160 GDYAAGQQLYHLES--DHNQIM----YIVFDPQRSYGSDDKSIKVKLPTLNATEEHLMA 212
           G YAAGQ +Y LE+  D N  M     I+F       S  +  +VKLPTL+AT++HL+A
Sbjct: 199 GGYAAGQSIYSLETVLDFNNGMSEKTSILFS---PSSSSSEPTRVKLPTLSATDKHLLA 254

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437650|ref|XP_004136604.1| PREDICTED: uncharacterized protein LOC101210744 [Cucumis sativus] gi|449511488|ref|XP_004163968.1| PREDICTED: uncharacterized protein LOC101226155 [Cucumis sativus]

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/201 (57%), Positives = 146/201 (72%), Gaps = 5/201 (2%)

Query: 14  TTNFKSFRVLYRYSAKEEDDND--GENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPT 71
           TT   SFR  YR++A  ED ++    +  FDEAV LFN+ AYY CHD LE+LW  AE+PT
Sbjct: 46  TTIPLSFRTSYRFTADHEDGDEKITGDFGFDEAVDLFNQGAYYDCHDVLEALWNEAEDPT 105

Query: 72  RTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFI 131
           RTLIHG+LQCAVG +HLFN+NH+GAMMELGEG+ KLRKM   SGPF  FE EI+A L+F+
Sbjct: 106 RTLIHGILQCAVGLHHLFNRNHRGAMMELGEGVCKLRKMEFPSGPFRTFEREITAVLDFV 165

Query: 132 YRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVFDPQRSYGS 191
           Y TQIELAAC + +C+ M+ SERSY+LLG Y  GQ+LY +E   +    IVF  Q    S
Sbjct: 166 YLTQIELAACDESVCVTMEGSERSYELLGRYGEGQKLYDMEKQVDGSTCIVFSSQT---S 222

Query: 192 DDKSIKVKLPTLNATEEHLMA 212
               ++VKLPTL+AT++HL+A
Sbjct: 223 QTHPLRVKLPTLDATKQHLLA 243

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115483975|ref|NP_001065649.1| Os11g0130200 [Oryza sativa Japonica Group] gi|77548513|gb|ABA91310.1| expressed protein [Oryza sativa Japonica Group] gi|113644353|dbj|BAF27494.1| Os11g0130200 [Oryza sativa Japonica Group] gi|215765304|dbj|BAG87001.1| unnamed protein product [Oryza sativa Japonica Group] gi|218185160|gb|EEC67587.1| hypothetical protein OsI_34952 [Oryza sativa Indica Group] gi|222615445|gb|EEE51577.1| hypothetical protein OsJ_32810 [Oryza sativa Japonica Group]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/182 (59%), Positives = 134/182 (73%), Gaps = 13/182 (7%)

Query: 40  SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMME 99
           SFD AVALFN   ++ CHD +E LWYTAEEPTRTL+H +LQCAV F+HLFNQNH+GAMME
Sbjct: 94  SFDAAVALFNGGEFHACHDVVEELWYTAEEPTRTLLHAILQCAVAFHHLFNQNHRGAMME 153

Query: 100 LGEGLGKLRKMNL---RSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSY 156
           LGEGL KLRK+ L    + PF  F+ E++AAL FIYRTQ ELAAC DD+CL MD S  SY
Sbjct: 154 LGEGLCKLRKLRLDDDTTSPFSRFQEEVAAALNFIYRTQKELAACTDDLCLTMDGSATSY 213

Query: 157 QLLGDYAAGQQLYHLES----DHNQIMYIVFDPQRSYGSDDKSIKVKLPTLNATEEHLMA 212
           QLLG++AAGQ+LY LE+    D + +  I+F       +  + ++VKLPTL+ATE HL A
Sbjct: 214 QLLGNFAAGQKLYRLETTTSADGDGVPTIIF------SASSRLVRVKLPTLSATEHHLAA 267

Query: 213 CK 214
            +
Sbjct: 268 LQ 269

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2063213	261	AT2G41120 "AT2G41120" [Arabido	0.915	0.750	0.589	4.3e-61
UNIPROTKB|Q74CK9	137	GSU1664 "Uncharacterized prote	0.317	0.496	0.397	4.2e-08
TIGR_CMR|GSU_1664	137	GSU_1664 "conserved hypothetic	0.317	0.496	0.397	4.2e-08

TAIR|locus:2063213 AT2G41120 "AT2G41120" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 128/217 (58%), Positives = 159/217 (73%)

Query:    14 TTNFKSFRVLY------RYS---AKEEDDNDG---ENCSFDEAVALFNERAYYKCHDCLE 61
             +T F S RV +      RY+    ++E+D+D    E  SF+EAV LFN+R YYK HD LE
Sbjct:    41 STKFSSIRVRFSRRSIVRYNDHAGEDEEDSDEDKEEYWSFEEAVTLFNKRDYYKSHDALE 100

Query:    62 SLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFE 121
             +LW  AEEPTRTLIHG+LQCAVGF+HLFN NHKGAMMELGEG+ KLRKMN   GPFHEFE
Sbjct:   101 ALWIQAEEPTRTLIHGILQCAVGFHHLFNNNHKGAMMELGEGVCKLRKMNFEDGPFHEFE 160

Query:   122 NEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDYAAGQQLYHLES--DHNQIM 179
              ++SA LEF+Y+TQ+ELAAC++D+CL MDQS+RSYQLLG YAAG+ +Y LE+  D N  M
Sbjct:   161 RDVSAVLEFVYQTQLELAACSEDMCLTMDQSDRSYQLLGGYAAGESIYSLETVLDFNNGM 220

Query:   180 Y----IVFDPQRSYGSDDKSIKVKLPTLNATEEHLMA 212
                  I+F P  S     +  +VKLPTL AT++HL+A
Sbjct:   221 SETTSILFSPLHS---SSEPTRVKLPTLTATDKHLLA 254

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|Q74CK9 GSU1664 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 126 (49.4 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query:    43 EAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGE 102
             +A+  FN   +++CH+ LE LW  +E   R    G LQ AV  +H  N N  GAM  L  
Sbjct:    14 QALGEFNRGDWFECHETLEDLWIGSEGEIRDFYQGALQLAVALHHWRNGNLGGAMSLLQG 73

Query:   103 GLGKLRKM 110
             G G LR++
Sbjct:    74 GAGYLRRV 81

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1664 GSU_1664 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 126 (49.4 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query:    43 EAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGE 102
             +A+  FN   +++CH+ LE LW  +E   R    G LQ AV  +H  N N  GAM  L  
Sbjct:    14 QALGEFNRGDWFECHETLEDLWIGSEGEIRDFYQGALQLAVALHHWRNGNLGGAMSLLQG 73

Query:   103 GLGKLRKM 110
             G G LR++
Sbjct:    74 GAGYLRRV 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       214   0.00085  112 3  11 22  0.37    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  191 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.29u 0.13s 18.42t   Elapsed:  00:00:01
  Total cpu time:  18.29u 0.13s 18.42t   Elapsed:  00:00:01
  Start:  Mon May 20 19:24:06 2013   End:  Mon May 20 19:24:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
pfam03745	55	pfam03745, DUF309, Domain of unknown function (DUF	4e-18
COG1547	156	COG1547, COG1547, Predicted metal-dependent hydrol	2e-05

>gnl|CDD|202755 pfam03745, DUF309, Domain of unknown function (DUF309)

 Score = 74.5 bits (184), Expect = 4e-18
 Identities = 23/54 (42%), Positives = 30/54 (55%)

Query: 40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNH 93
          +  E V LFN   Y++ H+ LE LW  A  P R L+ G++Q AV  YHL   N 
Sbjct: 2  ALREGVELFNAGDYFEAHEVLEELWKAAPGPERDLLQGLIQLAVALYHLRRGNL 55

This domain is found in eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding. Length = 55

>gnl|CDD|224464 COG1547, COG1547, Predicted metal-dependent hydrolase [General function prediction only]

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 45  VALFNERAYYKCHDCLESLWYTAEEPTRTL--IHGVLQCAVGFY-HLFNQNHKGAMMELG 101
           V +FN   Y +CHD LE  W    E  R    + G++Q AV  Y H+  +N  GA     
Sbjct: 19  VEVFNRGHYIECHDDLEDSWKEVSEGLRKERYVVGLIQIAVALYRHVRRRNLLGAEERFW 78

Query: 102 EGLGKLRKM-----NLRSGPFHEFENEISAALE 129
           E    L         +           I   LE
Sbjct: 79  EAHEYLEDAWREYRGVDLDSLLLLLQAIILLLE 111

Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PF03745	62	DUF309: Domain of unknown function (DUF309); Inter	99.93
COG1547	156	Predicted metal-dependent hydrolase [General funct	99.44
COG1547	156	Predicted metal-dependent hydrolase [General funct	96.93
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	92.52
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	91.57
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	88.71
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	87.19
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	85.61
TIGR02710	380	CRISPR-associated protein, TIGR02710 family. Membe	85.34
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	84.2
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	82.56
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	81.2
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	80.1

>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function

Probab=99.93  E-value=7.4e-26  Score=162.36  Aligned_cols=62  Identities=37%  Similarity=0.724  Sum_probs=57.3

Q ss_pred             hhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 047859           39 CSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMEL  100 (214)
Q Consensus        39 ~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll  100 (214)
                      +.|..|+.+||+|+|||||||||++|+..+++++.+||||||+|||+||+++||++||++|+
T Consensus         1 ~~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~   62 (62)
T PF03745_consen    1 EALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL   62 (62)
T ss_dssp             -HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence            47899999999999999999999999999888999999999999999999999999999986

The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.

>COG1547 Predicted metal-dependent hydrolase [General function prediction only]

Probab=99.44  E-value=3.2e-13  Score=112.48  Aligned_cols=90  Identities=24%  Similarity=0.344  Sum_probs=76.8

Q ss_pred             HHHHHhccCCchhhhhhhHHhhccCC-cchh-hHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHhhccCCCCCCcc
Q 047859           43 EAVALFNERAYYKCHDCLESLWYTAE-EPTR-TLIHGVLQCAVGFY-HLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHE  119 (214)
Q Consensus        43 ~gi~LFN~G~YfEAHEVLEe~Wk~~~-g~er-~~lqGLIQlAvAl~-H~~rGN~~GA~~Ll~rAl~~L~~~~~~~~p~~~  119 (214)
                      -++..||+++||+||+++|+.|+... +.++ .+|+|+||+|+++| |.++.|+.||.++|.+|.+.|...+     -.+
T Consensus        17 ~~~~~~~~~~~~~~h~~~E~~w~~~~~~~~~~~~~v~liq~a~~~y~h~r~~~~l~a~~~f~ea~e~L~d~~-----r~~   91 (156)
T COG1547          17 PLVEVFNRGHYIECHDDLEDSWKEVSEGLRKERYVVGLIQIAVALYRHVRRRNLLGAEERFWEAHEYLEDAW-----REY   91 (156)
T ss_pred             hhHHHHhccchhhhhhHHHHHHhhccccccccchhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh-----HHh
Confidence            59999999999999999999999998 4545 89999999999999 9999999999999999999999873     446


Q ss_pred             cccCHHHHHHHHHHhhHH
Q 047859          120 FENEISAALEFIYRTQIE  137 (214)
Q Consensus       120 ~GvDV~aLl~~i~~l~~E  137 (214)
                      .|+|+..+..++++...-
T Consensus        92 ~~~~~~~~~~L~q~~i~~  109 (156)
T COG1547          92 RGVDLDSLLLLLQAIILL  109 (156)
T ss_pred             cCcchhHHHHHHHHHHHH
Confidence            888888544444444433

>COG1547 Predicted metal-dependent hydrolase [General function prediction only]

Probab=96.93  E-value=0.0011  Score=55.46  Aligned_cols=71  Identities=14%  Similarity=0.147  Sum_probs=56.2

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhh----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRT----LIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~----~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      ..+..-.++...+||||||++|+.|....+..-.    +.|.+|....+.-|+..++..-+..+.++++...+..
T Consensus        64 h~r~~~~l~a~~~f~ea~e~L~d~~r~~~~~~~~~~~~L~q~~i~~~~~~~~~~~~~l~~~~~~~q~~~~~is~~  138 (156)
T COG1547          64 HVRRRNLLGAEERFWEAHEYLEDAWREYRGVDLDSLLLLLQAIILLLETLSHWSEGILPIADELEQKALRDISEV  138 (156)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhhHHhcCcchhHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHHHHHHH
Confidence            3445555677889999999999999999965444    7777777888888999999999999988866655543

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=92.52  E-value=0.57  Score=43.88  Aligned_cols=68  Identities=21%  Similarity=0.164  Sum_probs=58.6

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKL  107 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L  107 (214)
                      ...+..+..+||.++|=+|=+++++++...++..+  ++-+..++-|+.+|.+-.++.|...+++.....
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~  199 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD  199 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence            34578899999999999999999999987554444  888999999999999999999999999877653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=91.57  E-value=1.6  Score=29.30  Aligned_cols=60  Identities=13%  Similarity=0.075  Sum_probs=45.5

Q ss_pred             HHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           41 FDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        41 l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      |..|..++..|+|=+|=++++.+=+..|+    ...  +....|..+.+.|++..|...+++++..
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~--a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD----NPE--AWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHH--HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46789999999999999999998887653    122  2233355566899999999999998853

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=88.71  E-value=2.3  Score=27.06  Aligned_cols=60  Identities=7%  Similarity=-0.024  Sum_probs=45.7

Q ss_pred             HHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           41 FDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        41 l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      +..|..++..|+|-+|-+.++...+..+...      .+....|..+...|++..|...+.+++..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   63 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALEL   63 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5677888899999999999999887765332      33344555666779999999999988764

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=87.19  E-value=6.1  Score=29.45  Aligned_cols=68  Identities=15%  Similarity=0.123  Sum_probs=50.0

Q ss_pred             HHHHHHHhccCCchhhhhhhHHhhccCC--cchh---hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           41 FDEAVALFNERAYYKCHDCLESLWYTAE--EPTR---TLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        41 l~~gi~LFN~G~YfEAHEVLEe~Wk~~~--g~er---~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      |.....-...|+|.+|=|.|...+=-..  ....   .+-.+  .+..|..|...|++..|...+++|+..-+..
T Consensus         2 ~l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~a--ll~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen    2 YLRYLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYA--LLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            4455666779999999999988885544  1211   23334  4445668999999999999999999887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=85.61  E-value=5.5  Score=32.95  Aligned_cols=73  Identities=10%  Similarity=-0.008  Sum_probs=56.0

Q ss_pred             CCCCCcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 047859           32 DDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKL  107 (214)
Q Consensus        32 ~~~~e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L  107 (214)
                      +++...+.-+..|..+++.|+|=+|-+.++.+....|...   +..-+.+..|..+...|++..|...+.++++.-
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~  100 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP---YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH  100 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            4466678889999999999999999999999988766321   222223444667788899999999999988643

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02710 CRISPR-associated protein, TIGR02710 family

Probab=85.34  E-value=3  Score=39.85  Aligned_cols=64  Identities=20%  Similarity=0.186  Sum_probs=56.1

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCC-cchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAE-EPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELG  101 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~-g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~  101 (214)
                      ...+..+..+||.++|=.|+++++++=.... +..+..++-+..++-|+.+|.+-+++.|...++
T Consensus       131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~  195 (380)
T TIGR02710       131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN  195 (380)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence            3446678899999999999999999776644 567889999999999999999999999999998

Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=84.20  E-value=5.6  Score=32.04  Aligned_cols=66  Identities=14%  Similarity=0.168  Sum_probs=51.2

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ..-+..|..++..|+|-+|.+.++......+.+.   ..+.+....|..+...|++..|...+.+|+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  101 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALEL  101 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3457888889999999999999999876554322   12345556677778889999999999999875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=82.56  E-value=5.6  Score=33.36  Aligned_cols=67  Identities=9%  Similarity=0.069  Sum_probs=48.9

Q ss_pred             CcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047859           36 GENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLG  105 (214)
Q Consensus        36 e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~  105 (214)
                      +...-|..|..+|+.|+|-+|=+.|+.+...-|+..   +..-.++..|.-+...|++..|...+.+-+.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~---~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP---YAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456789999999999999999999999999877422   2223344455567788999999999886654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=81.20  E-value=7.9  Score=26.70  Aligned_cols=67  Identities=12%  Similarity=-0.063  Sum_probs=48.4

Q ss_pred             HHHHHHhccCCchhhhhhhHHhhccCC-cchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 047859           42 DEAVALFNERAYYKCHDCLESLWYTAE-EPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLR  108 (214)
Q Consensus        42 ~~gi~LFN~G~YfEAHEVLEe~Wk~~~-g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~  108 (214)
                      .-|..++..|+|=+|=+.++..=.-.. -+......+.+..-.|..+...|+...|...+.+|+...+
T Consensus        10 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen   10 NLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            456677889999999888887554422 1223444466667777788899999999999999997654

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=80.10  E-value=12  Score=26.68  Aligned_cols=67  Identities=12%  Similarity=0.092  Sum_probs=49.4

Q ss_pred             cchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           37 ENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        37 ~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      .+.-+..|..++..|+|=+|-+.++.+....++... .-..  .+-.|......|++..|..++++++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~   68 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNA--HYWLGEAYYAQGKYADAAKAFLAVVKK   68 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHH--HHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            345688999999999999999999998876553221 1222  233455567789999999999998854

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
2cwy_A	94	Hypothetical protein TTHA0068; structural genomics	1e-20
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	1e-17

>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A Length = 94

 Score = 81.8 bits (202), Expect = 1e-20
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 41  FDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMEL 100
           ++E + L+    YY+ H+ LE  W  A    R L+ GV+  A   +    +  +  +  L
Sbjct: 5   WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQ--RRLGRPGLRNL 62

Query: 101 GEGLGKLRKMNLRSGPF--HEFENEISAALE 129
            +   +L  +              E    L 
Sbjct: 63  RKAEARLEGLPCPLMGLDWRSLLQEARRRLG 93

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1 Length = 161

 Score = 75.5 bits (185), Expect = 1e-17
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 26  YSAKEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAE--EPTRTLIHGVLQCAV 83
           +    + +++    +    V L+N   +++ HDC E  WY           +HG++Q A 
Sbjct: 21  WRTDGQWEHETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAA 80

Query: 84  GFY-HLFNQNHKGAMMELGEGLGKLRKM 110
           G Y H   ++  G        L   R +
Sbjct: 81  GAYKHFDFEDDDGMRSLFRTSLQYFRGV 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	100.0
2cwy_A	94	Hypothetical protein TTHA0068; structural genomics	99.96
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	92.82
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	91.79
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	91.71
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	90.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	90.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	90.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	90.47
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	90.02
2l6j_A	111	TPR repeat-containing protein associated with HSP;	89.9
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	89.63
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	89.56
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	89.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	89.13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	89.04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	88.86
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	88.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	88.49
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	88.46
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	88.14
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	88.09
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	87.85
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	87.81
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	87.73
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	87.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	86.69
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	86.58
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	85.75
3k9i_A	117	BH0479 protein; putative protein binding protein,	84.82
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	84.28
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	84.15
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	83.47
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	83.22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	82.95
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	82.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	82.56
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	82.53
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	82.4
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	82.39
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	82.36
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	81.74
2kat_A	115	Uncharacterized protein; NESG, structure, structur	81.65
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	81.34
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	81.32
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	81.29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	80.81
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	80.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	80.04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	80.03

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=100.00  E-value=3.6e-34  Score=237.78  Aligned_cols=120  Identities=16%  Similarity=0.265  Sum_probs=110.3

Q ss_pred             CCcchhHHHHHHHhccCCchhhhhhhHHhhccCCcc--hhhHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc
Q 047859           35 DGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEP--TRTLIHGVLQ-CAVGFYHLFNQNHKGAMMELGEGLGKLRKMN  111 (214)
Q Consensus        35 ~e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~--er~~lqGLIQ-lAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~~  111 (214)
                      .+..++|.+|+.|||+|+||||||+||++|+..+++  +|.||||||| +|||+||+++||++||++|+++|+.+|+.++
T Consensus        30 ~~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~  109 (161)
T 2ijq_A           30 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP  109 (161)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred             CCccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            457789999999999999999999999999999876  9999999999 9999999999999999999999999999984


Q ss_pred             CCCCCCcccccCHHHHHHHHHHhhHHHHhcccCceeeecCcchhHHhhh
Q 047859          112 LRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLG  160 (214)
Q Consensus       112 ~~~~p~~~~GvDV~aLl~~i~~l~~Elaa~~~d~~l~~dgs~~~~~~Lg  160 (214)
                           ..++|||+..|+.++.++..+...+ ++|||++||+++++++|+
T Consensus       110 -----~~~~GIDv~~L~~~~~~~l~dp~~~-~~P~l~~dg~~~~~~~~~  152 (161)
T 2ijq_A          110 -----NDYYGVDLLDVRTTVTNALSDPSAL-HGWQIRLDGEYPTCRPED  152 (161)
T ss_dssp             -----TTGGGBCHHHHHHHHHHHHHCGGGG-TTCCCCBTTBCCCCCHHH
T ss_pred             -----CccCCcCHHHHHHHHHHHhhCCccC-CCCeEEecCCCCCCccCC
Confidence                 3579999999999999988654444 499999999999999997

>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A

Probab=99.96  E-value=4.9e-30  Score=195.59  Aligned_cols=91  Identities=20%  Similarity=0.320  Sum_probs=84.9

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccCCCCCC
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPF  117 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~~~~~~p~  117 (214)
                      ++.|..|+.+||+|+||||||+||++|+..++++|.+||||||+|||+||+++||+  |++++++|+.+|+.+|     .
T Consensus         2 ~~~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~-----~   74 (94)
T 2cwy_A            2 VPDWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLP-----C   74 (94)
T ss_dssp             CCCHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCC-----S
T ss_pred             CHHHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCC-----C
Confidence            46799999999999999999999999999999999999999999999999999999  9999999999999984     3


Q ss_pred             cccccCHHHHHHHHHHhh
Q 047859          118 HEFENEISAALEFIYRTQ  135 (214)
Q Consensus       118 ~~~GvDV~aLl~~i~~l~  135 (214)
                      .++|||+..|++++.++.
T Consensus        75 ~~~gidv~~L~~~~~~~l   92 (94)
T 2cwy_A           75 PLMGLDWRSLLQEARRRL   92 (94)
T ss_dssp             SBTTBCHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHh
Confidence            479999999999997653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=92.82  E-value=0.38  Score=33.20  Aligned_cols=71  Identities=11%  Similarity=-0.037  Sum_probs=54.6

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      -+.-|..++..|+|=+|-+.++..-...+........+.+....|..+...|++..|...+.+++......
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            34567778889999999999988777655333334556666777888888999999999999999887654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=91.79  E-value=0.33  Score=34.59  Aligned_cols=66  Identities=14%  Similarity=0.096  Sum_probs=47.9

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcc---hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEP---TRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLG  105 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~---er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~  105 (214)
                      ..-|.-|..+|+.++|-.|...++.+-+..+.+   .-....-+.++|.+  +.+.|+...|..++++|+.
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~--~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYA--VYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHH--HHHccCHHHHHHHHHHHHh
Confidence            446888999999999999999999986654211   11122333455554  4578899999999999985

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=91.71  E-value=0.63  Score=32.06  Aligned_cols=70  Identities=9%  Similarity=-0.048  Sum_probs=42.7

Q ss_pred             hhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 047859           39 CSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLR  108 (214)
Q Consensus        39 ~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~  108 (214)
                      .-..-|..++..|+|=+|-+.++......+........+.+....|..+...|++..|...+.+++....
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4566666777777777777777665554443223334455555556666667777777777777766543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=90.74  E-value=1.1  Score=29.78  Aligned_cols=62  Identities=11%  Similarity=0.027  Sum_probs=48.1

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      .+..|..++..|+|-+|-+.++.+-...+....   ..+..+  |..+...|++..|...+++++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~l--g~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKD---EAYYLM--GNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH---HHHHHH--HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---HHHHHH--HHHHHHcCCHHHHHHHHHHHHhc
Confidence            578899999999999999999999887664322   133333  44456789999999999999864

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=90.55  E-value=1.1  Score=33.02  Aligned_cols=74  Identities=12%  Similarity=0.035  Sum_probs=58.1

Q ss_pred             cchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           37 ENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        37 ~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      ...-...|..++..|+|-+|-+.++...............+.+....|..+...|++..|...+.+|+......
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   99 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL   99 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            34456677888889999999999998877555333344566667777888889999999999999999988765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=90.50  E-value=1.3  Score=31.74  Aligned_cols=63  Identities=11%  Similarity=0.128  Sum_probs=49.5

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ...+..|..++..|+|-+|-+.++.+-...|...    .++  ...|..+...|++..|...+++|+..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~--~~lg~~~~~~g~~~~A~~~~~~al~l   80 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAW--RSLGLTQAENEKDGLAIIALNHARML   80 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHH--HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4578999999999999999999999888766432    222  23344566889999999999999864

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=90.47  E-value=1.5  Score=28.80  Aligned_cols=62  Identities=3%  Similarity=-0.170  Sum_probs=47.0

Q ss_pred             hhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           39 CSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        39 ~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      .-+..|..++..|+|-+|-+.++......+...    ..  ....|..+...|++..|...+.+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VL--YSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HH--HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----HH--HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            346678889999999999999999988766432    12  223344566789999999999999864

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=90.02  E-value=0.95  Score=33.30  Aligned_cols=71  Identities=8%  Similarity=-0.009  Sum_probs=54.4

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      .+.-|..++..|+|=+|-+.++......+........+.+....|..+...|++..|...+++|+......
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence            34557777788999999999998876554333334455555667788889999999999999999988776

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=89.90  E-value=1.7  Score=28.80  Aligned_cols=61  Identities=15%  Similarity=0.156  Sum_probs=48.1

Q ss_pred             hhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047859           39 CSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLG  105 (214)
Q Consensus        39 ~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~  105 (214)
                      .-+..|..++..|+|-+|-+.++.+-...+...      .+....|..+...|++..|...+++++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP------VGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            346789999999999999999999888766432      2233445667788999999999999985

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.63  E-value=2.4  Score=29.31  Aligned_cols=68  Identities=15%  Similarity=0.014  Sum_probs=51.7

Q ss_pred             CcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           36 GENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        36 e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      +...-+..|..++..|+|=+|-+.++.+....+.+ ......+..  .|..+...|++..|...+.+++..
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~--~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRN--RAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHH--HHHHHHHHccHHHHHHHHHHHHhh
Confidence            45667888999999999999999999998876532 112333333  444567789999999999999864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=89.56  E-value=2.2  Score=27.23  Aligned_cols=62  Identities=8%  Similarity=0.034  Sum_probs=47.5

Q ss_pred             hhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           39 CSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        39 ~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      .-+..|..++..|+|-+|-+.++..-...+...    .  +....|..+...|++..|...+++++..
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----E--AWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----H--HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            345678888999999999999999887765432    2  2234455667899999999999999864

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=89.23  E-value=2.3  Score=28.64  Aligned_cols=65  Identities=8%  Similarity=-0.084  Sum_probs=50.0

Q ss_pred             CcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           36 GENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        36 e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ....-+..|..++..|+|=+|-+.++.+....+...      -+....|..+...|++..|...+.+++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA------KLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH------HHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            456667888999999999999999999888765431      22233455568889999999999999864

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=89.13  E-value=1.3  Score=32.44  Aligned_cols=64  Identities=13%  Similarity=-0.042  Sum_probs=45.7

Q ss_pred             cchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           37 ENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        37 ~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ...-+..|..+|..|+|-+|-+.++.+....+...    .  +....|..+...|++..|...+++|+..
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~--~~~~l~~~~~~~g~~~~A~~~~~~al~~   74 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP----I--YLSNRAAAYSASGQHEKAAEDAELATVV   74 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----H--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH----H--HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34567778888889999999999988887765431    1  2233345566778888888888888754

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=89.04  E-value=2.1  Score=29.73  Aligned_cols=61  Identities=11%  Similarity=0.062  Sum_probs=44.7

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      -+..|..+|..|+|=+|-+.++.+-...+...    ..  ....|..+...|++..|...+.+++..
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~--~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RG--YSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HH--HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HH--HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45678889999999999999998887765431    22  233344556788999999999988754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=88.86  E-value=0.93  Score=35.30  Aligned_cols=73  Identities=10%  Similarity=-0.039  Sum_probs=53.9

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCc--chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEE--PTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g--~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      ..-+..|..++..|+|=+|-+.++.+......  .......+.+....|..+...|++..|...+.+++......
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            34456688888999999999999998775331  11233445555566677788999999999999999876543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=88.63  E-value=3  Score=31.45  Aligned_cols=96  Identities=11%  Similarity=-0.057  Sum_probs=53.4

Q ss_pred             ccccccccceeeeeeecccCCCCCCCc-------chhHHHHHHHhccCCchhhhhhhHHhhccCCcch----------hh
Q 047859           11 SIHTTNFKSFRVLYRYSAKEEDDNDGE-------NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPT----------RT   73 (214)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~e~-------~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~e----------r~   73 (214)
                      ++|++....+.+--+|....+..+...       ..-+..|..+|..|+|-+|-+.++.+-...+...          ..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~   84 (198)
T 2fbn_A            5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKK   84 (198)
T ss_dssp             -----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred             ccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence            344444444444445544444333332       2345678889999999999999999887655221          11


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           74 LIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        74 ~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      -+...+..-.|..+...|++..|...+.+++..
T Consensus        85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            122234445566677899999999999999865

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=88.49  E-value=2.4  Score=29.31  Aligned_cols=65  Identities=15%  Similarity=0.102  Sum_probs=48.8

Q ss_pred             CcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           36 GENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        36 e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ....-+..|..+|..|+|-+|-+.++.+....+...      -+....|..+...|++..|...+.+++..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA------VYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            345567889999999999999999998887765431      12333455667789999999999988864

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=88.46  E-value=2.2  Score=33.52  Aligned_cols=70  Identities=11%  Similarity=0.100  Sum_probs=54.0

Q ss_pred             CCCcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           34 NDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        34 ~~e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ..+....+..|..+|..|+|-+|-+.++.+-...|...   +..-+..-.|..+...|++..|...+.+++..
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   81 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE---WAADAQFYLARAYYQNKEYLLAASEYERFIQI   81 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc---chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            33567789999999999999999999999998877432   11223334455667889999999999999864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=88.14  E-value=2.6  Score=28.09  Aligned_cols=64  Identities=2%  Similarity=-0.109  Sum_probs=49.8

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRK  109 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~  109 (214)
                      -+..|..++..|+|-+|-+.++.+....+...      .+....|..+...|++..|...+.+++..-..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   70 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNM------TYITNQAAVYFEKGDYNKCRELCEKAIEVGRE   70 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence            35678888999999999999999988765431      23344566677899999999999999876543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=88.09  E-value=2.7  Score=27.28  Aligned_cols=64  Identities=13%  Similarity=-0.006  Sum_probs=48.8

Q ss_pred             cchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           37 ENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        37 ~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ...-+..|..++..|+|=+|-+.++.+....+....    .  ....|..+...|++..|...+.+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~--~~~~a~~~~~~~~~~~A~~~~~~a~~~   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK----Y--WLMKGKALYNLERYEEAVDCYNYVINV   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH----H--HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH----H--HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344567888999999999999999998887664322    2  234455667889999999999999854

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=87.85  E-value=3.2  Score=28.33  Aligned_cols=64  Identities=9%  Similarity=0.057  Sum_probs=44.8

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      .+..|..++..|+|=+|-+.++.+....+.... .-..+  .-.|..+...|++..|...+.+++..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~--~~lg~~~~~~~~~~~A~~~~~~~~~~   68 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVY-TPNAL--YWLGESYYATRNFQLAEAQFRDLVSR   68 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT-HHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc-cHHHH--HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            577888888899999999999888877663321 01222  23344566788899999888888754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=87.81  E-value=2.5  Score=30.43  Aligned_cols=64  Identities=6%  Similarity=-0.000  Sum_probs=49.4

Q ss_pred             cchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           37 ENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        37 ~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ....+..|..++..|+|-+|-+.++.+-...|... ..|     ...|..+...|++..|...+++|+..
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~-----~~lg~~~~~~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA-RYF-----LGLGACRQSLGLYEQALQSYSYGALM   81 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHH-----HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH-HHH-----HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            45567889999999999999999999888766432 222     23355567889999999999999864

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=87.73  E-value=2.7  Score=32.47  Aligned_cols=69  Identities=12%  Similarity=-0.005  Sum_probs=49.2

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      -+..|..++..|+|=+|-+.++.+-...+++.  ...+.+....|..+...|++..|...+.+++......
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   76 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDL--KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI   76 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCcccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence            46678888888888888888888877655432  3334444455666777888888888888888765543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=87.72  E-value=3.2  Score=27.55  Aligned_cols=63  Identities=10%  Similarity=-0.047  Sum_probs=47.5

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ..-+..|..++..|+|=+|-+.++.+....+..      ..+....|..+...|++..|...+.+++..
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence            445667888899999999999999988766533      123334455667889999999999999864

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=86.69  E-value=2.6  Score=31.24  Aligned_cols=64  Identities=13%  Similarity=0.107  Sum_probs=49.6

Q ss_pred             cchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           37 ENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        37 ~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ...-+..|..++..|+|-+|-+.++.+....|.... .|     ...|..+...|++..|...+++|+..
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~-----~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR-FF-----LGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HH-----HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH-HH-----HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            445677899999999999999999998887664322 22     23355667889999999999999864

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=86.58  E-value=3.5  Score=28.22  Aligned_cols=69  Identities=12%  Similarity=0.039  Sum_probs=52.6

Q ss_pred             CcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           36 GENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        36 e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      +...-+..|..++..|+|=+|-+.++.+-...|....    ++..  .|......|++..|...+++|+..-...
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~--lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG----TYYH--LGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHH--HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHH--HHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            3455678899999999999999999999887764322    2333  3445677899999999999999765443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=85.75  E-value=3.2  Score=27.61  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=49.5

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCc-chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEE-PTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLG  105 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g-~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~  105 (214)
                      ..-+.-|..++..|+|=+|-+.++......+. +.......-+....|..+...|++..|...+.+++.
T Consensus        39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34456788888899999999999998877652 222222233444556667788999999999999986

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=84.82  E-value=4.5  Score=28.03  Aligned_cols=64  Identities=8%  Similarity=-0.081  Sum_probs=49.0

Q ss_pred             cchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           37 ENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        37 ~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ...-+.-|..++..|+|=+|-+.++.+-...|..    ...+  ...|..+...|++..|...+.+++..
T Consensus        27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALR--VFYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHH--HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHH--HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3445677888999999999999999988776644    2222  33455667789999999999999864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=84.28  E-value=4.1  Score=33.55  Aligned_cols=71  Identities=14%  Similarity=0.014  Sum_probs=54.7

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      ..-+..|..++..|+|=+|-+.++.+-...+++..  ..+.+....|..+...|++..|...+.+|+......
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR--TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            44567888999999999999999999887654333  344445555667778899999999999999876543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=84.15  E-value=5.7  Score=26.02  Aligned_cols=61  Identities=8%  Similarity=0.031  Sum_probs=45.1

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      -+..|..++..|+|=+|-+.++.+....+....      +....|..+...|++..|...+++++..
T Consensus        12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~~~~   72 (125)
T 1na0_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------AWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            455677788899999999999998876553321      2233455567789999999999998764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=83.47  E-value=2.6  Score=30.76  Aligned_cols=69  Identities=13%  Similarity=0.020  Sum_probs=49.2

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccC--------Ccchh----hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTA--------EEPTR----TLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLG  105 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~--------~g~er----~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~  105 (214)
                      ..-...|..+|..|+|-+|-+.++.+....        +.+..    .-....+..-.|..+...|++..|...+.+|+.
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            344678999999999999999998877652        11110    222233445556667888999999999999986


Q ss_pred             H
Q 047859          106 K  106 (214)
Q Consensus       106 ~  106 (214)
                      .
T Consensus        92 ~   92 (162)
T 3rkv_A           92 R   92 (162)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=83.22  E-value=5.2  Score=33.23  Aligned_cols=68  Identities=4%  Similarity=-0.054  Sum_probs=54.8

Q ss_pred             HHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           43 EAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        43 ~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      .|..++..|+|=+|-+.++.+-............+.+..-.|..+...|++..|...+.+|+......
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~  176 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH  176 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence            78889999999999999999876554323344566666777788888999999999999999887765

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=82.95  E-value=7.6  Score=25.47  Aligned_cols=61  Identities=8%  Similarity=0.032  Sum_probs=37.3

Q ss_pred             HHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 047859           41 FDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKL  107 (214)
Q Consensus        41 l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L  107 (214)
                      +..|..++..|+|-+|-+.++..-...+....      +....|..+...|++..|...+.+++..-
T Consensus        39 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------AWYNLGNAYYKQGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH------HHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            44566666777777777777776655443211      12233445567777777777777776544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=82.64  E-value=2.6  Score=32.16  Aligned_cols=62  Identities=10%  Similarity=-0.000  Sum_probs=44.5

Q ss_pred             hhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           39 CSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        39 ~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      .-+..|..++..|+|-+|-+.++.+-...+...    .  +....|......|++..|...+.+++..
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~--~~~~la~~~~~~~~~~~A~~~~~~a~~~  100 (252)
T 2ho1_A           39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA----D--AHAALAVVFQTEMEPKLADEEYRKALAS  100 (252)
T ss_dssp             HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----H--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----H--HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            346677888889999999999999877655331    1  2233344556788889998888888754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=82.56  E-value=3.8  Score=31.61  Aligned_cols=71  Identities=15%  Similarity=-0.003  Sum_probs=53.0

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      -+..|..++..|+|=+|-+.++..-............+.+....|..+...|++..|...+.+++......
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  116 (338)
T 3ro2_A           46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL  116 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence            34667888889999999999988665443222233445555666777889999999999999999887665

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=82.53  E-value=4.9  Score=30.61  Aligned_cols=64  Identities=9%  Similarity=0.011  Sum_probs=50.3

Q ss_pred             cchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           37 ENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        37 ~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      .+.-+..|..+|..|+|=+|-+.++.+-...|... ..|.+     .|......|++..|...+++|+..
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~-~~~~~-----lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV-DYIMG-----LAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHH-----HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHH-----HHHHHHHHccHHHHHHHHHHHHhh
Confidence            45567889999999999999999999988776432 23333     355567889999999999999864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=82.40  E-value=6.8  Score=27.45  Aligned_cols=59  Identities=8%  Similarity=-0.034  Sum_probs=29.0

Q ss_pred             HHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047859           41 FDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLG  105 (214)
Q Consensus        41 l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~  105 (214)
                      +..|..++..|+|=+|-+.++.+....+...    .  +....|..+...|++..|...+.+++.
T Consensus        17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~--~~~~~a~~~~~~~~~~~A~~~~~~a~~   75 (166)
T 1a17_A           17 KTQANDYFKAKDYENAIKFYSQAIELNPSNA----I--YYGNRSLAYLRTECYGYALGDATRAIE   75 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----H--HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----H--HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445555556666666666665555443221    1  112223334445556666666655554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=82.39  E-value=8.2  Score=26.16  Aligned_cols=66  Identities=12%  Similarity=0.132  Sum_probs=49.3

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ...+..|..++..|+|=+|-+.++.+-...+.... ....+..  .|..+...|++..|...+++++..
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK-AAGGLLK--LGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT-HHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc-cHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45678899999999999999999998887664321 1223333  344566889999999999998864

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=82.36  E-value=5.2  Score=28.67  Aligned_cols=62  Identities=8%  Similarity=-0.025  Sum_probs=47.5

Q ss_pred             HHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 047859           42 DEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRK  109 (214)
Q Consensus        42 ~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~  109 (214)
                      .-|..+|..|+|=+|-+.++.+..-.|...    ..+  .-.|..+...|++..|...+.+|+..-..
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~----~~~--~nlg~~~~~~~~~~~A~~~~~~al~~~~~   74 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNI----TFY--NNKAAVYFEEKKFAECVQFCEKAVEVGRE   74 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHH--HhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence            458899999999999999999887766431    222  23355667889999999999999976443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=81.74  E-value=4.8  Score=31.06  Aligned_cols=70  Identities=13%  Similarity=-0.003  Sum_probs=49.2

Q ss_pred             cchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhh-HHHH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           37 ENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRT-LIHG---------VLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        37 ~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~-~lqG---------LIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      .+..+..|..++..|+|=+|-+.++.+-...|..... ++.+         -+....|..+...|++..|...+++++..
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3457889999999999999999999988776532221 1200         00011455667889999999999988854

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=81.65  E-value=7.4  Score=26.51  Aligned_cols=68  Identities=10%  Similarity=-0.030  Sum_probs=51.4

Q ss_pred             CcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 047859           36 GENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRK  109 (214)
Q Consensus        36 e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~  109 (214)
                      +...-+.-|..++..|+|=+|-+.++.+-...+...    ..+  ...|..+...|++..|...+++++..-..
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS----VAW--KWLGKTLQGQGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH--HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH----HHH--HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            345567788899999999999999999888766432    222  33355667789999999999999876543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=81.34  E-value=9.2  Score=25.19  Aligned_cols=63  Identities=13%  Similarity=-0.053  Sum_probs=47.8

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ..-+..|..++..|+|=+|-+.++.+-...+...      .+....|..+...|++..|...+.+++..
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS------KAYGRMGLALSSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            4455677888889999999999999877655331      23344556677899999999999999864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=81.32  E-value=7.1  Score=31.51  Aligned_cols=70  Identities=13%  Similarity=0.019  Sum_probs=51.0

Q ss_pred             hhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           39 CSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        39 ~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      .-+..|..++..|+|=+|-+.++.+-...+.+...  .+.+....|..+...|++..|...+.+|+......
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   80 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT--LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI   80 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            34678889999999999999999888775544332  33334444556677889999999999888776543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=81.29  E-value=9  Score=25.00  Aligned_cols=63  Identities=8%  Similarity=0.038  Sum_probs=46.9

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      ..-+.-|..++..|+|=+|-+.++..-...+...    .  +....|..+...|++..|...+.+++..
T Consensus        44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~--~~~~la~~~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----E--AWYNLGNAYYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----H--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH----H--HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3445677888889999999999999887655332    1  2234455667889999999999998754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=80.81  E-value=8  Score=27.78  Aligned_cols=62  Identities=6%  Similarity=-0.101  Sum_probs=46.3

Q ss_pred             hhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           39 CSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        39 ~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      .....|..+|..|+|=+|-+.++.+=...|...    ..+.  -.|..+...|++..|...+.+|+..
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~--~~~~~~~~~~~~~~A~~~~~~al~~   76 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----ILYS--NRAACLTKLMEFQRALDDCDTCIRL   76 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH--HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHH--HHhhHHHhhccHHHHHHHHHHHHHh
Confidence            345679999999999999999998766655332    2222  2355567789999999999999853

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=80.37  E-value=7.4  Score=32.44  Aligned_cols=71  Identities=8%  Similarity=0.035  Sum_probs=55.6

Q ss_pred             hHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           40 SFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        40 ~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      .+..|..++..|+|=+|-+.++..-............+.+..-.|..+...|++..|...+.+|+......
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH  174 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence            45578888999999999999998766544222335566666677778888999999999999999887765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=80.04  E-value=5.2  Score=30.72  Aligned_cols=61  Identities=11%  Similarity=-0.007  Sum_probs=38.7

Q ss_pred             hhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047859           39 CSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLG  105 (214)
Q Consensus        39 ~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~  105 (214)
                      .-+..|..+|..|+|=+|-+.++.+....+....    .+..+  |..+...|++..|...+.+++.
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l--~~~~~~~~~~~~A~~~~~~a~~   65 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY----IYNRR--AVCYYELAKYDLAQKDIETYFS   65 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST----THHHH--HHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH----HHHHH--HHHHHHHhhHHHHHHHHHHHHh
Confidence            3566777777777777777777777766553221    12222  2245567777777777777765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=80.03  E-value=5.8  Score=30.92  Aligned_cols=65  Identities=12%  Similarity=0.121  Sum_probs=45.7

Q ss_pred             CcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           36 GENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        36 e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      +...-+..|..+++.|+|-+|-+.++.+-...+....    .+  ...|..+...|++..|...+.+++..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~--~~l~~~~~~~~~~~~A~~~~~~a~~~   84 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE----AW--RSLGLTQAENEKDGLAIIALNHARML   84 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HH--HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH----HH--HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3445688899999999999999999988776553221    12  22344566778888888888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d2cwya1	94	a.246.2.1 (A:1-94) Hypothetical protein TTHA0068 {	2e-19
d2ijqa1	145	a.246.2.1 (A:14-158) Hypothetical protein rrnAC103	1e-17

>d2cwya1 a.246.2.1 (A:1-94) Hypothetical protein TTHA0068 {Thermus thermophilus [TaxId: 274]} Length = 94

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein TTHA0068
species: Thermus thermophilus [TaxId: 274]

 Score = 77.1 bits (190), Expect = 2e-19
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 41  FDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMEL 100
           ++E + L+    YY+ H+ LE  W  A    R L+ GV+  A   +    +  +  +  L
Sbjct: 5   WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQR--RLGRPGLRNL 62

Query: 101 GEGLGKLRK 109
            +   +L  
Sbjct: 63  RKAEARLEG 71

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]} Length = 145

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

 Score = 74.2 bits (182), Expect = 1e-17
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 40  SFDEAVALFNERAYYKCHDCLESLWYTAEEPT--RTLIHGVLQCAVGFY-HLFNQNHKGA 96
           +    V L+N   +++ HDC E  WY           +HG++Q A G Y H   ++  G 
Sbjct: 20  AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGM 79

Query: 97  MMELGEGLGKLRK 109
                  L   R 
Sbjct: 80  RSLFRTSLQYFRG 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d2ijqa1	145	Hypothetical protein rrnAC1037 {Haloarcula marismo	99.97
d2cwya1	94	Hypothetical protein TTHA0068 {Thermus thermophilu	99.96
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.53
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	90.86
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	89.81
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	86.26
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	82.17

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=1.6e-31  Score=216.89  Aligned_cols=117  Identities=17%  Similarity=0.295  Sum_probs=103.4

Q ss_pred             CcchhHHHHHHHhccCCchhhhhhhHHhhccCC--cchhhHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhhccC
Q 047859           36 GENCSFDEAVALFNERAYYKCHDCLESLWYTAE--EPTRTLIHGVLQCAVGFYH-LFNQNHKGAMMELGEGLGKLRKMNL  112 (214)
Q Consensus        36 e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~--g~er~~lqGLIQlAvAl~H-~~rGN~~GA~~Ll~rAl~~L~~~~~  112 (214)
                      ..+.+|.+|+.|||+|+||||||+||++|+..+  +++|.|||||||+|||+|| +++||++||++|+++|+.+|+.++ 
T Consensus        16 t~~~a~~~Gi~lfN~g~y~eaHE~lEe~W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al~~L~~~~-   94 (145)
T d2ijqa1          16 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP-   94 (145)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC-
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC-
Confidence            567899999999999999999999999999976  4789999999999999885 899999999999999999999884 


Q ss_pred             CCCCCcccccCHHHHHHHHHHhhHHHHhcccCceeeecCcchhHHh
Q 047859          113 RSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQL  158 (214)
Q Consensus       113 ~~~p~~~~GvDV~aLl~~i~~l~~Elaa~~~d~~l~~dgs~~~~~~  158 (214)
                          ..++||||+.|+.++.++..+.... .|+.++.|+..++...
T Consensus        95 ----~~~~Gidv~~l~~~~~~~~~d~~~~-~p~ri~ld~~~p~~~p  135 (145)
T d2ijqa1          95 ----NDYYGVDLLDVRTTVTNALSDPSAL-HGWQIRLDGEYPTCRP  135 (145)
T ss_dssp             ----TTGGGBCHHHHHHHHHHHHHCGGGG-TTCCCCBTTBCCCCCH
T ss_pred             ----CccCCccHHHHHHHHHHHHhchhhc-CCcceecCCCCCCCCc
Confidence                3479999999999999998765544 5789999998776543

>d2cwya1 a.246.2.1 (A:1-94) Hypothetical protein TTHA0068 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein TTHA0068
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.5e-29  Score=191.79  Aligned_cols=90  Identities=20%  Similarity=0.328  Sum_probs=82.9

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccCCCCCC
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKMNLRSGPF  117 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~~~~~~p~  117 (214)
                      .|.|.+|+.+||+|+||||||+||++|++.++++|.|||||||+|||+||.++||  ||.+++.+|+.+|+.+|     .
T Consensus         2 ~P~~~~gi~lfn~g~y~eaHE~lE~~W~~~~~~er~~~qgLIQ~Ava~~h~~~~~--ga~~ll~ka~~~L~~~~-----~   74 (94)
T d2cwya1           2 VPDWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGR--PGLRNLRKAEARLEGLP-----C   74 (94)
T ss_dssp             CCCHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCC-----S
T ss_pred             ChhHHHHHHHHhCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHhcCC-----c
Confidence            4679999999999999999999999999999999999999999999999999988  88899999999999884     3


Q ss_pred             cccccCHHHHHHHHHHh
Q 047859          118 HEFENEISAALEFIYRT  134 (214)
Q Consensus       118 ~~~GvDV~aLl~~i~~l  134 (214)
                      .++|||+..|++.+.+.
T Consensus        75 ~~~Gldv~~l~~~~~~~   91 (94)
T d2cwya1          75 PLMGLDWRSLLQEARRR   91 (94)
T ss_dssp             SBTTBCHHHHHHHHHHH
T ss_pred             cccCcCHHHHHHHHHHH
Confidence            47999999999988764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.032  Score=38.01  Aligned_cols=69  Identities=14%  Similarity=0.117  Sum_probs=49.3

Q ss_pred             chhHHHHHHHhccCCchhhhhhhHHhhccCCc-chhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 047859           38 NCSFDEAVALFNERAYYKCHDCLESLWYTAEE-PTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGK  106 (214)
Q Consensus        38 ~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g-~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~  106 (214)
                      +.-|.-|..+|+.|+|-+|.+.+|++=+..+. +....-.+-+.--.|..+.+.|++..|...+++|+..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            45689999999999999999999986433221 1111112223334466788999999999999999864

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=90.86  E-value=0.48  Score=34.97  Aligned_cols=69  Identities=13%  Similarity=-0.107  Sum_probs=50.4

Q ss_pred             HHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           42 DEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        42 ~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      .-|..++..|+|-+|-+.++.+-.............-+....|..+.+.|++..|...+++|+....+.
T Consensus       256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence            347778889999999999998755433222233444455556667788999999999999999876654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.81  E-value=0.76  Score=31.37  Aligned_cols=76  Identities=12%  Similarity=0.087  Sum_probs=55.6

Q ss_pred             eeeecccCCCCCCCcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047859           23 LYRYSAKEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGE  102 (214)
Q Consensus        23 ~~~~~~~~~~~~~e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~r  102 (214)
                      .|+|....+-  .+....+..|+.+++.|+|=+|=+.++.+=+..|..    ..++..+  |..+.+.|++..|...+++
T Consensus         4 ~y~f~~~n~~--~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~l--g~~~~~~~~~~~A~~~~~~   75 (112)
T d1hxia_           4 DYPFEANNPY--MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSL--GLTQAENEKDGLAIIALNH   75 (112)
T ss_dssp             CCCCCSSCGG--GGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHH--HHHHHHTTCHHHHHHHHHH
T ss_pred             hccCCCCCCc--ccHHHHHHHHHHHHHHhhhHHHHHHHhhhccccccc----chhhhhh--hhhhhhhhhHHHhhccccc
Confidence            3666655543  233457999999999999999999999987665532    2333333  4456788999999999999


Q ss_pred             HHHH
Q 047859          103 GLGK  106 (214)
Q Consensus       103 Al~~  106 (214)
                      |+..
T Consensus        76 al~~   79 (112)
T d1hxia_          76 ARML   79 (112)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            9853

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.26  E-value=1.8  Score=32.79  Aligned_cols=77  Identities=13%  Similarity=0.059  Sum_probs=54.7

Q ss_pred             eeeeecccCCCCCCCcchhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047859           22 VLYRYSAKEEDDNDGENCSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELG  101 (214)
Q Consensus        22 ~~~~~~~~~~~~~~e~~~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~  101 (214)
                      =+|+|.-..+-  .+....|..|+.+|..|+|-+|-+.++.+=+..|..    ..++..+  |..+...|++..|...+.
T Consensus         6 ~~~~~~~~n~~--~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~l--g~~~~~~~~~~~A~~~~~   77 (323)
T d1fcha_           6 KGYQFEEENPL--RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYL--GTTQAENEQELLAISALR   77 (323)
T ss_dssp             CCCCCCSSCTT--TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHH--HHHHHHTTCHHHHHHHHH
T ss_pred             HhHhhcccCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH--HHHHHHcCChHHHHHHHH
Confidence            35666554332  244557999999999999999999999976665532    2222232  445667899999999999


Q ss_pred             HHHHH
Q 047859          102 EGLGK  106 (214)
Q Consensus       102 rAl~~  106 (214)
                      +|+..
T Consensus        78 ~al~~   82 (323)
T d1fcha_          78 RCLEL   82 (323)
T ss_dssp             HHHHH
T ss_pred             hhhcc
Confidence            98853

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=82.17  E-value=3.7  Score=29.86  Aligned_cols=71  Identities=7%  Similarity=-0.113  Sum_probs=51.5

Q ss_pred             hhHHHHHHHhccCCchhhhhhhHHhhccCCcchhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Q 047859           39 CSFDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIHGVLQCAVGFYHLFNQNHKGAMMELGEGLGKLRKM  110 (214)
Q Consensus        39 ~~l~~gi~LFN~G~YfEAHEVLEe~Wk~~~g~er~~lqGLIQlAvAl~H~~rGN~~GA~~Ll~rAl~~L~~~  110 (214)
                      .....|..+++.|+|=+|-+.++..=...+. .....+..+....|..+...|++..|...+++++......
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            3455678888999999999998887555443 2223344555556777888899999999999998766544