Citrus Sinensis ID: 047875

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHccccccccccEEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEcHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHccc
Coil and Loop (DISEMBL)
MAIRFPKIVNAKQALRRAFMAseaatvpkghFAVYIGEFEkkrfvvpishlkhpsfQNLLSQAgeefgfdhpmgvltipcseqVFFDLTCSL
Flexible Loop (DISEMBL)
mairfpkivnAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL
Low Complexity Region (SEG)
MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL
Disordered region (IsUnstruct)
******KIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTC**
Disordered Region (DISOPRED)
*AIR**************************HFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL
Disordered Region (DISEMBL)
MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL
Disordered Region (DISPRO)
*AIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
P33082	82	Auxin-induced protein X15	no	no	0.771	0.865	0.638	9e-22
P33081	82	Auxin-induced protein 15A	no	no	0.771	0.865	0.666	4e-21
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.967	0.967	0.543	1e-20
P33080	92	Auxin-induced protein X10	no	no	0.967	0.967	0.489	1e-19
P33079	93	Auxin-induced protein 10A	no	no	0.934	0.924	0.5	2e-19
P33083	90	Auxin-induced protein 6B	no	no	0.967	0.988	0.532	5e-19

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 58/72 (80%), Gaps = 1/72 (1%)

Query: 21 ASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPC 80
          AS A   PKG+ AVY+GE + KRFV+P+S++  PSFQ+LL+QA EEFG+DHPMG LTIPC
Sbjct: 11 ASNAVDAPKGYLAVYVGE-KMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPC 69

Query: 81 SEQVFFDLTCSL 92
          SE+VF  +TC L
Sbjct: 70 SEEVFQRITCCL 81

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 58/72 (80%), Gaps = 1/72 (1%)

Query: 21 ASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPC 80
          AS+AA  PKG+ AVY+GE + KRFV+P+S+L  PSFQ+LLSQA EEFG+DHPMG LTIPC
Sbjct: 11 ASKAADAPKGYLAVYVGE-KLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPC 69

Query: 81 SEQVFFDLTCSL 92
          SE VF  +T  L
Sbjct: 70 SEDVFQCITSCL 81

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 60/92 (65%), Gaps = 3/92 (3%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          M  R P I     A   A  +S+    PKG+ AVY+GE   KRFV+P+SHL  P FQ+LL
Sbjct: 1  MGFRLPGIRKTLSARNEA--SSKVLDAPKGYLAVYVGE-NMKRFVIPVSHLNQPLFQDLL 57

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFG+DHPMG LTIPCSE +F  +T  L
Sbjct: 58 SQAEEEFGYDHPMGGLTIPCSEDLFQHITSCL 89

Vigna radiata var. radiata (taxid: 3916)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 3/92 (3%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          M  R P I     A  +A  +S++  VPKG+  VY+G+ + +RF++P+S+L  PSFQ+LL
Sbjct: 1  MGFRLPGIRKTSIAANQA--SSKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPSFQDLL 57

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          +QA EEFG+DHPMG LTIPC E  F  +T  L
Sbjct: 58 NQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHL 89

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 64/96 (66%), Gaps = 10/96 (10%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAAT----VPKGHFAVYIGEFEKKRFVVPISHLKHPSF 56
          M  R   IV      R +F  ++AA+    VPKG+ AVY+G+ + +RF +P+S+L  PSF
Sbjct: 1  MGFRIAGIVR-----RTSFYTTQAASKRVDVPKGYAAVYVGD-KMRRFTIPVSYLNEPSF 54

Query: 57 QNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          Q LLSQA EEFG+DHPMG LTIPC E+ F ++T  L
Sbjct: 55 QELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHL 90

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 63/92 (68%), Gaps = 3/92 (3%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          M  R P I  A  +  +A  +S+A  V KG+ AVY+GE + +RFV+P+S+L  PSFQ+LL
Sbjct: 1  MGFRLPGIRKASFSANQA--SSKAVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPSFQDLL 57

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFG+ HP G LTIPCSE VF  +T  L
Sbjct: 58 SQAEEEFGYHHPNGGLTIPCSEDVFQHITSFL 89

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
359474902	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.968	0.717	2e-32
225427862	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.968	0.706	6e-32
225427834	95	PREDICTED: auxin-induced protein X15 [Vi	1.0	0.968	0.706	7e-32
359474898	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.968	0.706	8e-32
359475067	95	PREDICTED: auxin-induced protein 10A5 [V	1.0	0.968	0.684	2e-31
297744700	136	unnamed protein product [Vitis vinifera]	0.989	0.669	0.692	2e-31
297744698	107	unnamed protein product [Vitis vinifera]	1.0	0.859	0.695	2e-31
359475065	95	PREDICTED: auxin-induced protein X15 [Vi	1.0	0.968	0.684	5e-31
224080546	92	SAUR family protein [Populus trichocarpa	1.0	1.0	0.684	6e-31
297744702	94	unnamed protein product [Vitis vinifera]	1.0	0.978	0.684	7e-31

>gi|359474902|ref|XP_002276058.2| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|147776039|emb|CAN65270.1| hypothetical protein VITISV_040137 [Vitis vinifera]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 75/92 (81%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          MAIRF +I+ AKQ LRR   + E+  VPKGH  VY+GE EKKRFV+PIS+LKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETEKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFGFDHP+G LTIPC E+ F DLTCSL
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427862|ref|XP_002272231.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|359474896|ref|XP_003631552.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|147804680|emb|CAN62608.1| hypothetical protein VITISV_016869 [Vitis vinifera]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 75/92 (81%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          MAIRF +I+ AKQ LRR   + E+  VPKGH  VY+GE +KKRFV+PIS+LKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFGFDHP+G LTIPC E+ F DLTCSL
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427834|ref|XP_002271501.1| PREDICTED: auxin-induced protein X15 [Vitis vinifera]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 75/92 (81%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          MAIRF +I+ AKQ LRR   + E+  VPKGH  VY+GE +KKRFV+PIS+LKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGEAQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFGFDHP+G LTIPC E+ F DLTCSL
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474898|ref|XP_003631553.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera]

 Score =  140 bits (354), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 75/92 (81%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          MAIRF +I+ AKQ LRR   + E+  VPKGH  VY+GE +KKRFV+PIS+LKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSLESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFGFDHP+G LTIPC E+ F DLTCSL
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475067|ref|XP_003631580.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 75/92 (81%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          MAIRF +I+ AKQ LRR   + E+  VPKGH  +Y+GE++KKRFV+PIS+LKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILSSPESTNVPKGHVPIYVGEYQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFGFDHP+G LTIPC E+ F DLT SL
Sbjct: 61 SQAEEEFGFDHPLGALTIPCREEAFIDLTFSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744700|emb|CBI37962.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 74/91 (81%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          MAIRF +I+ AKQ LRR   + E+  VPKGH  VY+GE +KKRFV+PIS+LKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGEAQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCS 91
          SQA EEFGFDHP+G LTIPC E+ F DLTC+
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCT 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744698|emb|CBI37960.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 74/92 (80%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          MAIRF +I+ AKQ LRR   + E+  VPKGH  VY+GE EKKRFV+PIS+LKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETEKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFGFDHP+G LTIPC E+ F DLTC +
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCKI 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475065|ref|XP_003631579.1| PREDICTED: auxin-induced protein X15 [Vitis vinifera]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 74/92 (80%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          MAI F +I+ AKQ LRR   ++E+  VPKGH  VY+GE +KKRFV+PIS+LKHPSFQNLL
Sbjct: 1  MAIHFQRIIPAKQILRRILPSAESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFGFDHP+G LTIPC E+ F DLTC L
Sbjct: 61 SQAAEEFGFDHPLGGLTIPCREEAFIDLTCRL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080546|ref|XP_002306157.1| SAUR family protein [Populus trichocarpa] gi|222849121|gb|EEE86668.1| SAUR family protein [Populus trichocarpa]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 73/92 (79%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          M IR P IVNAKQ L+R  ++ + + VPKGH AVY+GE +KKRF VPIS+LKHPSFQNLL
Sbjct: 1  MGIRLPGIVNAKQILKRILLSEDTSNVPKGHLAVYVGEAQKKRFTVPISYLKHPSFQNLL 60

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFGFDH MG LTIPCSE+VF  L  S+
Sbjct: 61 SQAEEEFGFDHSMGGLTIPCSEEVFTGLILSM 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744702|emb|CBI37964.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 73/92 (79%)

Query: 1  MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLL 60
          M  R P IVNAKQ L+R  M  E   VPKG+FAVY+GE +KKRF+VP+S+LK PSFQNLL
Sbjct: 1  MGFRLPGIVNAKQILQRVRMGGEIKNVPKGYFAVYVGEDQKKRFLVPVSYLKDPSFQNLL 60

Query: 61 SQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          SQA EEFGFDHP G LTIPC+E+ F D+TCSL
Sbjct: 61 SQAEEEFGFDHPRGGLTIPCTEEAFIDVTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.956	0.888	0.585	4.2e-24
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	1.0	0.938	0.553	5.3e-24
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.891	0.872	0.588	5.5e-22
TAIR|locus:2116895	105	AT4G34810 "AT4G34810" [Arabido	0.847	0.742	0.629	3.9e-21
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.869	0.879	0.585	8e-21
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.902	0.922	0.564	1.3e-20
TAIR|locus:2116860	104	AT4G34770 [Arabidopsis thalian	1.0	0.884	0.544	1.7e-20
TAIR|locus:2161573	90	SAUR22 "AT5G18050" [Arabidopsi	0.902	0.922	0.552	3.5e-20
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.880	0.920	0.552	4.4e-20
TAIR|locus:2161538	90	SAUR19 "AT5G18010" [Arabidopsi	0.902	0.922	0.552	7.2e-20

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 55/94 (58%), Positives = 73/94 (77%)

Query:     1 MAIRFPKIV-NAKQALRRAFMASEAAT-----VPKGHFAVYIGEFEKKRFVVPISHLKHP 54
             MAIR P+++ ++KQ LR+A + S +++     VPKG+ AVY+GE   KRFVVP+S+L  P
Sbjct:     1 MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query:    55 SFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDL 88
             SFQ+LL +A EEFGFDHPMG LTIPCSE++F DL
Sbjct:    61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDL 94

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 52/94 (55%), Positives = 69/94 (73%)

Query:     1 MAIRFPKIV-NAKQALRRAFMASEAATVPKGHFAVYIGEF-EKKRFVVPISHLKHPSFQN 58
             MAIR  +++ ++KQ L+    +S    +PKGH AVY+GE  +K+RFVVP+++L HP FQ 
Sbjct:     1 MAIRISRVLQSSKQLLKSLSHSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQK 60

Query:    59 LLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
             LL +A EEFGFDHPMG LTIPC+EQ+F DL   L
Sbjct:    61 LLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRL 94

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 53/90 (58%), Positives = 67/90 (74%)

Query:     1 MAIRFPKIVNAKQALRRAFMASEAATVPKGHFAVYIGE-FE-KKRFVVPISHLKHPSFQN 58
             MAIR  +++N+KQ+ +      + + VPKGH AVY+GE  E KKRFVVPIS+L HPSFQ 
Sbjct:     1 MAIRLSRVINSKQSQK------QQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQG 54

Query:    59 LLSQAGEEFGFDHPMGVLTIPCSEQVFFDL 88
             LLS+A EEFGF+HP+G LTIPC E+ F  L
Sbjct:    55 LLSRAEEEFGFNHPIGGLTIPCREETFVGL 84

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 51/81 (62%), Positives = 58/81 (71%)

Query:    14 ALRRAFMASEAATVPKGHFAVYIGE---FEKKRFVVPISHLKHPSFQNLLSQAGEEFGFD 70
             A R    +S +  VPKGH AVY+GE    EKKRFVVPIS L HPSF+  LS+A EEFGF+
Sbjct:    22 ANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFN 81

Query:    71 HPMGVLTIPCSEQVFFDLTCS 91
             HPMG LTIPC E+VF DL  S
Sbjct:    82 HPMGGLTIPCREEVFLDLIAS 102

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/82 (58%), Positives = 62/82 (75%)

Query:     8 IVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEF 67
             ++ AK+ L R+  A+ AA  PKG  AVY+GE +KKR++VPIS+L  PSFQ LLS++ EEF
Sbjct:     7 LLGAKKILSRSTTAASAA--PKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEF 64

Query:    68 GFDHPMGVLTIPCSEQVFFDLT 89
             GFDHPMG LTIPC E  F ++T
Sbjct:    65 GFDHPMGGLTIPCPEDTFINVT 86

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 48/85 (56%), Positives = 62/85 (72%)

Query:     8 IVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEF 67
             ++ AK+ L R+  A  AA  PKG  AVY+GE +KKR++VP+S+L  PSFQ LLS++ EEF
Sbjct:     7 LLGAKKILSRSTGAGSAA--PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEF 64

Query:    68 GFDHPMGVLTIPCSEQVFFDLTCSL 92
             GFDHPMG LTIPC E  F ++T  L
Sbjct:    65 GFDHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116860 AT4G34770 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 55/101 (54%), Positives = 67/101 (66%)

Query:     1 MAIRFPKIVNAKQALRRAF---MASEAAT-----VPKGHFAVYIGE-FEKKRFVVPISHL 51
             M I+   +  AKQ L+R+    +AS  AT     VPKGH AVY+GE + +KRFV+PIS+L
Sbjct:     1 MGIQLIGLSQAKQKLQRSLSARIASLLATSGTNNVPKGHVAVYVGETYHRKRFVIPISYL 60

Query:    52 KHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
              HP FQ LL+ A EEFGFDHPMG LTIPC+E  F  L   L
Sbjct:    61 NHPLFQGLLNLAEEEFGFDHPMGGLTIPCTEDYFTALASIL 101

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 47/85 (55%), Positives = 62/85 (72%)

Query:     8 IVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEF 67
             ++ AK+ L R+  A  AA  PKG  AVY+GE +KKR++VP+S+L  PSFQ LLS++ +EF
Sbjct:     7 LLGAKKILSRSTAAVSAA--PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEF 64

Query:    68 GFDHPMGVLTIPCSEQVFFDLTCSL 92
             GFDHPMG LTIPC E  F ++T  L
Sbjct:    65 GFDHPMGGLTIPCHEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 47/85 (55%), Positives = 61/85 (71%)

Query:     8 IVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEF 67
             ++ AK+ L R    S A+  PKG  AVY+GE +KKR++VP+S+L  PSFQ LLS++ EEF
Sbjct:     7 LLGAKKILSR----STASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEF 62

Query:    68 GFDHPMGVLTIPCSEQVFFDLTCSL 92
             GFDHPMG LTIPC E  F ++T  L
Sbjct:    63 GFDHPMGGLTIPCPEDTFINVTSRL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161538 SAUR19 "AT5G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 47/85 (55%), Positives = 61/85 (71%)

Query:     8 IVNAKQALRRAFMASEAATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEF 67
             ++ AK+ L R+  A  AA  PKG  AVY+GE +KKR++VP+S+L  PSFQ LLS++ EEF
Sbjct:     7 LLGAKKILSRSTAAGSAA--PKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEF 64

Query:    68 GFDHPMGVLTIPCSEQVFFDLTCSL 92
             GF HPMG LTIPC E  F ++T  L
Sbjct:    65 GFAHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.5434	0.9673	0.9673	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	92
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-35
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-28
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	3e-28
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	3e-22

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  116 bits (292), Expect = 1e-35
 Identities = 52/100 (52%), Positives = 60/100 (60%), Gaps = 10/100 (10%)

Query: 1  MAIRFPKIVNAKQALRRA--------FMASEAATVPKGHFAVYIGEFEKKRFVVPISHLK 52
          MA R  K  +AK+ +  A           S +A VPKGHFAVY+GE E +RFVVPIS+L 
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGE-ETRRFVVPISYLN 59

Query: 53 HPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFFDLTCSL 92
          HP FQ LL +A EEFGFD   G LTIPC   VF  L   L
Sbjct: 60 HPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 98.3 bits (244), Expect = 2e-28
 Identities = 51/81 (62%), Positives = 58/81 (71%), Gaps = 3/81 (3%)

Query: 14  ALRRAFMASEAATVPKGHFAVYIGE---FEKKRFVVPISHLKHPSFQNLLSQAGEEFGFD 70
           A R    +S +  VPKGH AVY+GE    EKKRFVVPIS L HPSF+  LS+A EEFGF+
Sbjct: 22  ANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFN 81

Query: 71  HPMGVLTIPCSEQVFFDLTCS 91
           HPMG LTIPC E+VF DL  S
Sbjct: 82  HPMGGLTIPCREEVFLDLIAS 102

Length = 105

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 97.5 bits (243), Expect = 3e-28
 Identities = 43/66 (65%), Positives = 49/66 (74%), Gaps = 2/66 (3%)

Query: 27  VPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPCSEQVFF 86
           VPKGHF VY+GE  + R++VPIS L HP FQ+LL QA EEFGFDH MG LTIPC E VF 
Sbjct: 40  VPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMG-LTIPCEEVVFR 97

Query: 87  DLTCSL 92
            LT  +
Sbjct: 98  SLTSMI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 82.5 bits (203), Expect = 3e-22
 Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 22  SEAATVPKGHFAVYIGE-FEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDHPMGVLTIPC 80
           + +  VPKGH AVY+GE  EKKRFVVPIS+L HP F+  L++A EE GF H MG LTIPC
Sbjct: 34  TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPC 93

Query: 81  SEQVFFDLTCS 91
            E+ F  L  S
Sbjct: 94  REESFLHLITS 104

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PRK02899	197	adaptor protein; Provisional	84.73
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	81.12

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.7e-41  Score=231.54  Aligned_cols=90  Identities=53%  Similarity=0.857  Sum_probs=82.4

Q ss_pred             Cccccch----hHHHHHHHHhhhhhcc---------ccCCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhh
Q 047875            1 MAIRFPK----IVNAKQALRRAFMASE---------AATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEF   67 (92)
Q Consensus         1 m~~~~~~----~~~~k~~l~r~~s~~~---------~~~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEf   67 (92)
                      |||+..+    ++++||+||||.|.++         +.+||+||||||||+ +++||+||++|||||+|++||++|||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf   79 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF   79 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence            7777553    6789999999998764         458999999999998 7899999999999999999999999999


Q ss_pred             CCCCCCCceeeeCCHHHHHHhHhcC
Q 047875           68 GFDHPMGVLTIPCSEQVFFDLTCSL   92 (92)
Q Consensus        68 G~~~~~G~L~iPC~~~~F~~vl~~l   92 (92)
                      ||+|+ |+|+|||+++.|++++|+|
T Consensus        80 Gf~~~-G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         80 GFDHD-MGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCC-CcEEEeCCHHHHHHHHHHh
Confidence            99998 8999999999999999986

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=5e-40  Score=224.57  Aligned_cols=91  Identities=62%  Similarity=0.975  Sum_probs=81.6

Q ss_pred             CccccchhHHH-HHHHHhhhhhcc-------ccCCCCceEEEEeccC---ceeEEEEeccCCCchHHHHHHHHHhhhhCC
Q 047875            1 MAIRFPKIVNA-KQALRRAFMASE-------AATVPKGHFAVYIGEF---EKKRFVVPISHLKHPSFQNLLSQAGEEFGF   69 (92)
Q Consensus         1 m~~~~~~~~~~-k~~l~r~~s~~~-------~~~vpkG~~aVyVG~~---e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~   69 (92)
                      ||++++.|.+. ||+++|++...+       +.+|||||||||||++   +++||+||++|||||.|++||++|||||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf   80 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF   80 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            99999999966 999999883221       5689999999999972   589999999999999999999999999999


Q ss_pred             CCCCCceeeeCCHHHHHHhHhc
Q 047875           70 DHPMGVLTIPCSEQVFFDLTCS   91 (92)
Q Consensus        70 ~~~~G~L~iPC~~~~F~~vl~~   91 (92)
                      +|++|+|+|||+++.|++++++
T Consensus        81 ~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         81 NHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCEEeeCCHHHHHHHHHh
Confidence            9966999999999999999874

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=1.7e-37  Score=212.94  Aligned_cols=91  Identities=53%  Similarity=0.862  Sum_probs=80.0

Q ss_pred             CccccchhHHHHHHHHhhhhhcc------------ccCCCCceEEEEecc-CceeEEEEeccCCCchHHHHHHHHHhhhh
Q 047875            1 MAIRFPKIVNAKQALRRAFMASE------------AATVPKGHFAVYIGE-FEKKRFVVPISHLKHPSFQNLLSQAGEEF   67 (92)
Q Consensus         1 m~~~~~~~~~~k~~l~r~~s~~~------------~~~vpkG~~aVyVG~-~e~~RfvVpv~yL~hP~F~~LL~~aeeEf   67 (92)
                      ||.....+.++||++|..+...|            +.+|||||+|||||+ +|++||+||++|||||+|++||++|||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf   80 (108)
T PLN03219          1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC   80 (108)
T ss_pred             CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence            78888888899999875443322            467999999999998 46999999999999999999999999999


Q ss_pred             CCCCCCCceeeeCCHHHHHHhHhc
Q 047875           68 GFDHPMGVLTIPCSEQVFFDLTCS   91 (92)
Q Consensus        68 G~~~~~G~L~iPC~~~~F~~vl~~   91 (92)
                      ||+|++|+|+|||+++.|++++++
T Consensus        81 Gf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         81 GFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCEEEeCCHHHHHHHHHh
Confidence            999866999999999999999974

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=4.5e-37  Score=207.48  Aligned_cols=90  Identities=56%  Similarity=0.866  Sum_probs=76.3

Q ss_pred             CccccchhHHHHHHHHhhhhhcc---------ccCCCCceEEEEeccCceeEEEEeccCCCchHHHHHHHHHhhhhCCCC
Q 047875            1 MAIRFPKIVNAKQALRRAFMASE---------AATVPKGHFAVYIGEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFDH   71 (92)
Q Consensus         1 m~~~~~~~~~~k~~l~r~~s~~~---------~~~vpkG~~aVyVG~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~~   71 (92)
                      |.-++..+..+++...++.+..+         ..++|+||||||||+ +++||+||++|||||+|++||++|||||||++
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~   79 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQ   79 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence            55666666655655554443211         368999999999998 89999999999999999999999999999999


Q ss_pred             CCCceeeeCCHHHHHHhHhcC
Q 047875           72 PMGVLTIPCSEQVFFDLTCSL   92 (92)
Q Consensus        72 ~~G~L~iPC~~~~F~~vl~~l   92 (92)
                      + |+|+|||+++.|++++|+|
T Consensus        80 ~-G~l~iPC~~~~Fe~~l~~l   99 (100)
T PF02519_consen   80 D-GPLTIPCDVVLFEHLLWLL   99 (100)
T ss_pred             C-CcEEeeCCHHHHHHHHHHh
Confidence            7 9999999999999999986

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PRK02899 adaptor protein; Provisional

Probab=84.73  E-value=0.86  Score=33.83  Aligned_cols=24  Identities=25%  Similarity=0.717  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHhhhhCCCCCCCceee
Q 047875           54 PSFQNLLSQAGEEFGFDHPMGVLTI   78 (92)
Q Consensus        54 P~F~~LL~~aeeEfG~~~~~G~L~i   78 (92)
                      -+|.++|++|..|+||..+ |||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccC-CeEEE
Confidence            4677779999999999987 89876

>smart00666 PB1 PB1 domain

Probab=81.12  E-value=5.8  Score=24.26  Aligned_cols=47  Identities=28%  Similarity=0.497  Sum_probs=34.8

Q ss_pred             ccCceeEEEEeccCCCchHHHHHHHHHhhhhCCC----------CCCCceeeeCCHHHHHHhH
Q 047875           37 GEFEKKRFVVPISHLKHPSFQNLLSQAGEEFGFD----------HPMGVLTIPCSEQVFFDLT   89 (92)
Q Consensus        37 G~~e~~RfvVpv~yL~hP~F~~LL~~aeeEfG~~----------~~~G~L~iPC~~~~F~~vl   89 (92)
                      |+ +.+||.+|-    ...|.+|..+..+.|+..          .++..++|.++. ++...+
T Consensus         9 ~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~   65 (81)
T smart00666        9 GG-ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAI   65 (81)
T ss_pred             CC-EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHH
Confidence            65 789999986    778999999999999874          232367888875 444443

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00