Citrus Sinensis ID: 047877

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590
MALQALVPSSFLQSVSLSFTKVHPNFFYNNQLSCKTNSPSKVLCLAYKNNQENDRPLGNFRPTIWKDGSISSPVLEVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEYLKDHVTKLFIDPILV
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEcccccHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHcccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccc
ccccccccHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHccccHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccHHHHHHHHHHHHcccccc
malqalvpssflqsvslsftkvhpnffynnqlscktnspsKVLCLAYKnnqendrplgnfrptiwkdgsisspvlevETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEmqpdlaaekdcDLYATAILFRVFRQhgfnvssgvfnkfkdhdgnfkeslTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHlksmaapnldQNLAKHINDAleqplhmgvprieahkfisfyehddskndTLLKFAKLDFNRVQLLHQQELAYITRWMKglnfgstysysrdrTVEIYLWSVAQYfephfsrgriIFTKIYLLLLIIDDTydaygtfgelqRFTDAVerwdincvselpeymKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAqwfregyvppfdermsnaivtgtcfldpaaayiglgdiagIDAYEwlrsqpkimtaSFTLSRLIADLVSNKAEQERGHVASVVESYMKeygtsgeeTAEEFKKMIADGWKDineecmrptivpMRLLNVIVNIARLVEVFYKKmdgvtnpeylkdhvtklfidpilv
malqalvpssfLQSVSLSFTKVHPNFFYNNQLSCKTNSPSKVLCLAYKnnqendrplgnfrptiwkdgsisspvLEVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVsnkaeqerghVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDgvtnpeylkdhvtklfidpilv
MALQALVPSSFLQSVSLSFTKVHPNFFYNNQLSCKTNSPSKVLCLAYKNNQENDRPLGNFRPTIWKDGSISSPVLEVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKiylllliiddtydayGTFGELQRFTDAVERWDINCVSELPEYMKPLYGAllnlfdelnnelaeeGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEYLKDHVTKLFIDPILV
*********SFLQSVSLSFTKVHPNFFYNNQLSCKTNSPSKVLCLAYKNNQ****PLGNFRPTIWKDGSISSPVLEVETYDKL******HVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSN********VASVVESYM************EFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEYLKDHVTKLFIDPI**
*A*********************************************************FRPTIWKDGSISSPVL**********EMKDHVKEMLVAS*NDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKS************HINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQ**GHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEYLKDHVTKLFIDPILV
MALQALVPSSFLQSVSLSFTKVHPNFFYNNQLSCKTNSPSKVLCLAYKNNQENDRPLGNFRPTIWKDGSISSPVLEVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEYLKDHVTKLFIDPILV
*****L******************************************NNQENDRPLGNFRPTIWKDGSISSPVLEVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEYLKDHVTKLFIDPILV
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALQALVPSSFLQSVSLSFTKVHPNFFYNNQLSCKTNSPSKVLCLAYKNNQENDRPLGNFRPTIWKDGSISSPVLEVETxxxxxxxxxxxxxxxxxxxxxDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEYLKDHVTKLFIDPILV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query590 2.2.26 [Sep-21-2011]
P59287601 Casbene synthase, chlorop N/A no 0.950 0.933 0.504 1e-164
Q6Q3H3557 (-)-germacrene D synthase no no 0.923 0.978 0.476 1e-148
G5CV46555 Viridiflorene synthase OS N/A no 0.928 0.987 0.445 1e-141
F6M8H7562 Probable sesquiterpene sy N/A no 0.9 0.944 0.452 1e-141
B5A435559 Sesquiterpene synthase OS N/A no 0.925 0.976 0.445 1e-139
F6M8H4559 Probable sesquiterpene sy N/A no 0.905 0.955 0.454 1e-139
Q9XJ32556 Vetispiradiene synthase 1 N/A no 0.928 0.985 0.447 1e-139
F6M8H5562 Probable sesquiterpene sy N/A no 0.905 0.950 0.451 1e-137
Q9FQ27544 (E,E)-germacrene B syntha N/A no 0.898 0.974 0.438 1e-137
E3W207559 Sesquiterpene synthase OS N/A no 0.925 0.976 0.443 1e-136
>sp|P59287|CASS_RICCO Casbene synthase, chloroplastic OS=Ricinus communis GN=RCOM_1574350 PE=1 SV=1 Back     alignment and function desciption
 Score =  578 bits (1491), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 286/567 (50%), Positives = 387/567 (68%), Gaps = 6/567 (1%)

Query: 27  FYNNQLSCKTNSPSKVLCLAYKNNQENDRPLGNFRPTIWKD--GSISSPVLEVETYDKLN 84
           F+++        P++  CL+   +QE  RPL  F PT+W +   S++    E E+YD+  
Sbjct: 38  FFSSSAKSHFKKPTQA-CLSSTTHQEV-RPLAYFPPTVWGNRFASLTFNPSEFESYDERV 95

Query: 85  EEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKD 144
             +K  VK++L++S +D VE V+LI+LLCRLGVSYHFEN+IEE L+ IF  QPDL  EK+
Sbjct: 96  IVLKKKVKDILISSTSDSVETVILIDLLCRLGVSYHFENDIEELLSKIFNSQPDLVDEKE 155

Query: 145 CDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGE 204
           CDLY  AI+FRVFRQHGF +SS VF+KFKD DG FKESL  DA+GMLSL+EA+HL VHGE
Sbjct: 156 CDLYTAAIVFRVFRQHGFKMSSDVFSKFKDSDGKFKESLRGDAKGMLSLFEASHLSVHGE 215

Query: 205 DILEEALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHD-DS 263
           DILEEA  FT  +L+S +A  L  NL +HI +ALEQP H GVPR+EA KFI  YE D + 
Sbjct: 216 DILEEAFAFTKDYLQS-SAVELFPNLKRHITNALEQPFHSGVPRLEARKFIDLYEADIEC 274

Query: 264 KNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFE 323
           +N+TLL+FAKLD+NRVQLLHQQEL   ++W K LN  S   Y+RDR  EI+ W+VA YFE
Sbjct: 275 RNETLLEFAKLDYNRVQLLHQQELCQFSKWWKDLNLASDIPYARDRMAEIFFWAVAMYFE 334

Query: 324 PHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYG 383
           P ++  R+I  K+ LL+ +IDDT DAY T  E     +AV RWD++C+ +LP+YMK +Y 
Sbjct: 335 PDYAHTRMIIAKVVLLISLIDDTIDAYATMEETHILAEAVARWDMSCLEKLPDYMKVIYK 394

Query: 384 ALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIV 443
            LLN F E   EL  EG+SYSV + ++  + +VR Y++EA W  EG +P FD+ + N  +
Sbjct: 395 LLLNTFSEFEKELTAEGKSYSVKYGREAFQELVRGYYLEAVWRDEGKIPSFDDYLYNGSM 454

Query: 444 TGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVA 503
           T    L   A+++G+ +I G++ ++WL + PK+  AS    RL+ DL S+  EQ+RGHVA
Sbjct: 455 TTGLPLVSTASFMGVQEITGLNEFQWLETNPKLSYASGAFIRLVNDLTSHVTEQQRGHVA 514

Query: 504 SVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVF 563
           S ++ YM ++G S +E  +  +KM  D WK+INEECMR + V +  L  IVN+ARL +V 
Sbjct: 515 SCIDCYMNQHGVSKDEAVKILQKMATDCWKEINEECMRQSQVSVGHLMRIVNLARLTDVS 574

Query: 564 YKKMDGVTNPEYLKDHVTKLFIDPILV 590
           YK  DG T+ + LK  V  LF+DPI +
Sbjct: 575 YKYGDGYTDSQQLKQFVKGLFVDPISI 601
Catalyzes the cyclization of geranylgeranyl diphosphate to casbene, a diterpene phytoalexin with antibacterial and antifungal activity.
Ricinus communis (taxid: 3988)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 8
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|G5CV46|TPS31_SOLLC Viridiflorene synthase OS=Solanum lycopersicum GN=TPS31 PE=1 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|Q9XJ32|VTSS1_SOLTU Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|Q9FQ27|TPSGB_SOLHA (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
255544564599 Casbene synthase, chloroplast precursor, 0.932 0.918 0.517 1e-163
255544546614 Casbene synthase, chloroplast precursor, 0.920 0.884 0.504 1e-162
255544558601 Casbene synthase, chloroplast precursor 0.950 0.933 0.504 1e-162
284468415597 casbene synthase [Triadica sebifera] 0.923 0.912 0.504 1e-155
284468417598 casbene synthase [Euphorbia esula] 0.989 0.976 0.468 1e-155
317106718551 JHL22C18.7 [Jatropha curcas] 0.922 0.987 0.496 1e-154
397529239601 casbene synthase [Jatropha curcas] 0.955 0.938 0.474 1e-153
224126669563 predicted protein [Populus trichocarpa] 0.940 0.985 0.483 1e-152
225461172557 PREDICTED: (-)-germacrene D synthase [Vi 0.923 0.978 0.486 1e-150
255544616555 Casbene synthase, chloroplast precursor, 0.898 0.954 0.494 1e-149
>gi|255544564|ref|XP_002513343.1| Casbene synthase, chloroplast precursor, putative [Ricinus communis] gi|223547251|gb|EEF48746.1| Casbene synthase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 287/555 (51%), Positives = 381/555 (68%), Gaps = 5/555 (0%)

Query: 39  PSKVLCLAYKNNQENDRPLGNFRPTIWKD--GSISSPVLEVETYDKLNEEMKDHVKEMLV 96
           P    CL+   +QE  RPL +F PT+W +   S++    E E+YD     +K+ VK++LV
Sbjct: 47  PPAQACLSSTTHQEV-RPLAHFPPTVWGNRFASLTFNPSEFESYDGRVNVLKEKVKDLLV 105

Query: 97  ASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRV 156
           +S  D VE VVLI+LLCRLGVSYHFEN+IEE L+ IF  QPDL  EK+CDLY  AI+FRV
Sbjct: 106 SSATDSVETVVLIDLLCRLGVSYHFENDIEELLSKIFNSQPDLVDEKECDLYTAAIVFRV 165

Query: 157 FRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTA 216
           FRQHGF +SS VF+KFKD DG FKESL  DA+GMLSL+EA+HL VHGEDILEEA  FT  
Sbjct: 166 FRQHGFKMSSDVFSKFKDSDGKFKESLRGDAKGMLSLFEASHLSVHGEDILEEAFAFTKD 225

Query: 217 HLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHD-DSKNDTLLKFAKLD 275
           +L+S +A  L  NL +HI +ALEQP H GVPR+EA KFI  YE D + +N+TLL+FAKLD
Sbjct: 226 YLQS-SAVELFPNLKRHITNALEQPFHSGVPRLEARKFIDLYEADIECRNETLLEFAKLD 284

Query: 276 FNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTK 335
           +NRVQLLHQQEL   ++W K LN  S   Y+RDR  EI+ W+VA YFEP ++  R+I  K
Sbjct: 285 YNRVQLLHQQELCQFSKWWKDLNLASDIPYARDRMAEIFFWAVAMYFEPDYAHTRMIIAK 344

Query: 336 IYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNE 395
           + LL+ +IDDT DAY T  E     +AV RWD++C+ +LP+YMK +Y  LLN F E   E
Sbjct: 345 VVLLISLIDDTIDAYATMEETHILAEAVARWDMSCLEKLPDYMKVIYKLLLNTFSEFEKE 404

Query: 396 LAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAY 455
           L  EG+SYSV + ++  + +VR Y++EA W  EG +P FD+ + N  +T    L   A++
Sbjct: 405 LTAEGKSYSVKYGREAFQELVRGYYLEAVWRDEGKIPSFDDYLYNGSMTTGLPLVSTASF 464

Query: 456 IGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGT 515
           +G+ +I G++ ++WL + PK+  AS    RL+ DL S+  EQ+RGHVAS ++ YM ++G 
Sbjct: 465 MGVQEITGLNEFQWLETNPKLSYASGAFIRLVNDLTSHVTEQQRGHVASCIDCYMNQHGV 524

Query: 516 SGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEY 575
           S +E  +  +KM  D WK+INEECMR + V +  L  IVN+ARL +V YK  DG T+ + 
Sbjct: 525 SKDEAVKILQKMATDCWKEINEECMRRSQVSVGHLMRIVNLARLTDVSYKYGDGYTDSQQ 584

Query: 576 LKDHVTKLFIDPILV 590
           LK  V  LF+DPI +
Sbjct: 585 LKQFVKGLFVDPISI 599

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544546|ref|XP_002513334.1| Casbene synthase, chloroplast precursor, putative [Ricinus communis] gi|223547242|gb|EEF48737.1| Casbene synthase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255544558|ref|XP_002513340.1| Casbene synthase, chloroplast precursor [Ricinus communis] gi|28380030|sp|P59287.1|CASS_RICCO RecName: Full=Casbene synthase, chloroplastic; Flags: Precursor gi|223547248|gb|EEF48743.1| Casbene synthase, chloroplast precursor [Ricinus communis] Back     alignment and taxonomy information
>gi|284468415|gb|ADB90272.1| casbene synthase [Triadica sebifera] Back     alignment and taxonomy information
>gi|284468417|gb|ADB90273.1| casbene synthase [Euphorbia esula] Back     alignment and taxonomy information
>gi|317106718|dbj|BAJ53216.1| JHL22C18.7 [Jatropha curcas] Back     alignment and taxonomy information
>gi|397529239|dbj|BAM34474.1| casbene synthase [Jatropha curcas] Back     alignment and taxonomy information
>gi|224126669|ref|XP_002319897.1| predicted protein [Populus trichocarpa] gi|222858273|gb|EEE95820.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|255544616|ref|XP_002513369.1| Casbene synthase, chloroplast precursor, putative [Ricinus communis] gi|223547277|gb|EEF48772.1| Casbene synthase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.923 0.974 0.432 2e-118
TAIR|locus:2178657547 TPS21 "terpene synthase 21" [A 0.906 0.978 0.400 1.8e-112
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.908 0.974 0.407 3.6e-112
UNIPROTKB|Q8LSC3583 Q8LSC3 "Germacrene A synthase 0.916 0.927 0.407 1.6e-111
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.906 0.965 0.421 2.6e-111
UNIPROTKB|Q8LSC2558 Q8LSC2 "Germacrene A synthase 0.896 0.948 0.401 3.6e-105
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.928 0.959 0.391 6e-103
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.901 0.941 0.379 8.4e-102
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.896 0.937 0.372 7.4e-98
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.9 0.974 0.373 7.6e-96
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 242/560 (43%), Positives = 346/560 (61%)

Query:    41 KVLCLAYKNNQENDRPLGNFRPTIWKDGSISSPVL-EVETYDKLN--EEMKDHVKEMLVA 97
             KV   +  N +E  RP+ NF P+IW D  I+     E E   K    EE+K+ V+  L A
Sbjct:     5 KVPISSVPNLKELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVRRELAA 64

Query:    98 SRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDC-----DLYATAI 152
             + + P++++ +I+   RLG++YHFENEIEE L HI+        E +C     DLY+ A+
Sbjct:    65 TVDKPLQQLNIIDATQRLGIAYHFENEIEESLEHIYL---HTYVENNCFQGSHDLYSVAL 121

Query:   153 LFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALT 212
              FR+ RQ G+ VS  VF+KF+D++ NFK SL  DA+G+L LYEATHL VHGE++L++AL 
Sbjct:   122 WFRLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDDALE 181

Query:   213 FTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFA 272
             F    L+S+   +L+  LA+ +  AL +PL  G+PR+EA  F   YE  DS N  LLK A
Sbjct:   182 FAKTRLESIVN-HLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKALLKLA 240

Query:   273 KLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRII 332
             KLDFN +Q LH++EL+ + RW K L+F + + ++RDR VE Y W +  YFEP +S  R I
Sbjct:   241 KLDFNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKI 300

Query:   333 FTKXXXXXXXXXXXXXXXGTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXX 392
               K               GT  EL+ FT A++RWD+  + +LPEYMKP Y +        
Sbjct:   301 IIKVFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEI 360

Query:   393 XXXXXXXGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVT-GTCFLDP 451
                    G  + + + K++MK +V  Y  EA+W  E YVP F+E M  A+VT G  FL  
Sbjct:   361 EEEMDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLT- 419

Query:   452 AAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMK 511
               +Y+G+G+IA  +A++WL S P ++ AS ++ RL+ D+ S+K EQERGHVAS +E YMK
Sbjct:   420 TISYLGMGEIASKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMK 479

Query:   512 EYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVT 571
             +YG + EE  +EF+K +   WKDINEEC+RP  VP  LL  I+N+ R+++V YK  DG T
Sbjct:   480 QYGVTEEEAHDEFRKQLVKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYT 539

Query:   572 N-PEYLKDHVTKLFIDPILV 590
             +  + +KD++  L IDP++V
Sbjct:   540 HVKKAMKDNIASLLIDPMIV 559
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
TAIR|locus:2178657 TPS21 "terpene synthase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC3 Q8LSC3 "Germacrene A synthase long form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC2 Q8LSC2 "Germacrene A synthase short form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P59287CASS_RICCO4, ., 2, ., 3, ., 80.50440.95080.9334N/Ano
Q84UU4HUMS_ARATH4, ., 2, ., 3, ., -0.42040.91520.9872yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921
3rd Layer4.2.3.47LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-104
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-102
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 1e-68
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 2e-42
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 7e-34
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 5e-29
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 1e-17
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  691 bits (1785), Expect = 0.0
 Identities = 269/542 (49%), Positives = 367/542 (67%), Gaps = 9/542 (1%)

Query: 55  RPLGNFRPTIWKDG---SISSPVLEVETYDKLNEEMKDHVKEMLVASR--NDPVEEVVLI 109
           RP  NF P++W D    S+SS   E +  ++  EE+K+ V++ML  S    D  E + LI
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 110 NLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVF 169
           + L RLG+SYHFE+EI+E L++I+    +     + DLY TA+ FR+ RQHG+NVSS VF
Sbjct: 61  DRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVF 120

Query: 170 NKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPN--LD 227
            KFKD DG FKESLT D +GMLSLYEA+HL   GEDIL+EAL+FTT HL+     N  +D
Sbjct: 121 KKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIID 180

Query: 228 QNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQEL 287
            +L+  I  ALE PLH  +PR+EA  +I FYE +D  N+TLL+ AKLDFN +Q LHQ+EL
Sbjct: 181 PDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEEL 240

Query: 288 AYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTY 347
             ++RW K L+  S   ++RDR VE Y W+   YFEP +S  RI   K   L+ +IDDTY
Sbjct: 241 KILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTY 300

Query: 348 DAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSF 407
           D YGT  EL+ FT+AVERWDI+ + +LPEYMK ++ ALLN  +E+  EL +EG SY V +
Sbjct: 301 DVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPY 360

Query: 408 TKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAY 467
            K+  K +V+AY VEA+W  EGYVP F+E M NA+V+         +++G+GDI   +A+
Sbjct: 361 LKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAF 420

Query: 468 EWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKM 527
           EWL S+PK++ AS T+ RL+ D+ + + E +RG VAS +E YMKEYG S EE  EE KKM
Sbjct: 421 EWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKM 480

Query: 528 IADGWKDINEECMRP-TIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEY-LKDHVTKLFI 585
           I D WK++NEE ++P + VP  +    +N+AR+++VFYK+ DG T+PE  +KDH+T L  
Sbjct: 481 IEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLF 540

Query: 586 DP 587
           +P
Sbjct: 541 EP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 590
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.84
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.69
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.64
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 88.84
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 87.73
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 83.47
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 82.46
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=5e-153  Score=1275.34  Aligned_cols=533  Identities=50%  Similarity=0.858  Sum_probs=510.0

Q ss_pred             CCCCCCCCCCCCC-CCcCC-Ccc-hhhhHHHHHHHHHHHHHHHHhhc--CCCcccchhHhHHHhhhCcccccHHHHHHHH
Q 047877           55 RPLGNFRPTIWKD-GSISS-PVL-EVETYDKLNEEMKDHVKEMLVAS--RNDPVEEVVLINLLCRLGVSYHFENEIEERL  129 (590)
Q Consensus        55 r~~~~~~ps~W~~-~fl~~-~~~-~~~~~~~~~e~lk~~vr~~l~~~--~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L  129 (590)
                      ||++|||||+||| +|+++ ++. +...+.+++++||++||+||...  +.|++++|+|||+||||||+|||++||+++|
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L   80 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEIL   80 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence            7899999999999 55555 443 23378999999999999999865  6799999999999999999999999999999


Q ss_pred             HHHHhhCCccccCCCCChhhHHHHHHHhhhcCccccccccccccccccccccccccChHHHhhHhhhcccCCCCchHHHH
Q 047877          130 NHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEE  209 (590)
Q Consensus       130 ~~iy~~~~~~~~~~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLde  209 (590)
                      ++||++|.+.+...+.||++|||+|||||||||+||||||++|||++|+|++++.+||+||||||||||+++|||+||||
T Consensus        81 ~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLde  160 (542)
T cd00684          81 DYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDE  160 (542)
T ss_pred             HHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHH
Confidence            99999985422113579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCC--CChhHHHHHHHHhcCCccCCchhhhHhhhHhhccCCCcCCHHHHHHHhhhhHHHhhhhHHHH
Q 047877          210 ALTFTTAHLKSMAAPN--LDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQQEL  287 (590)
Q Consensus       210 a~~ft~~~L~~~~~~~--~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El  287 (590)
                      |+.||++||++.++++  ++++|+++|++||++|||+++||+|||+||++|++++++|++||||||||||+||++||+||
T Consensus       161 A~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El  240 (542)
T cd00684         161 ALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEEL  240 (542)
T ss_pred             HHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHH
Confidence            9999999999998732  67899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhhhcC
Q 047877          288 AYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWD  367 (590)
Q Consensus       288 ~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~averWD  367 (590)
                      ++++|||+++||..++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||++|++.||+||+|||
T Consensus       241 ~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd  320 (542)
T cd00684         241 KILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWD  320 (542)
T ss_pred             HHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhcc
Confidence            99999999999998889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhccccccc
Q 047877          368 INCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTC  447 (590)
Q Consensus       368 ~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~Ssg~  447 (590)
                      .++++.+|+|||+||.++++++++++.++.+++++++++|++++|+++++||++||+|+++||+||++|||++|++|+|+
T Consensus       321 ~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~  400 (542)
T cd00684         321 ISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGL  400 (542)
T ss_pred             ccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhH
Confidence            99999999999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHHHHHHHHHHH
Q 047877          448 FLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKM  527 (590)
Q Consensus       448 ~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~~m  527 (590)
                      ++++++++++||..+|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+|+|+|++++++|
T Consensus       401 ~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~  480 (542)
T cd00684         401 GPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKM  480 (542)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHH
Confidence            99999999999999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC-CCCCHhHHHHHHHHhhhhchhcccCCCCCCchh-HHHHHHHHhccc
Q 047877          528 IADGWKDINEECMRP-TIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEY-LKDHVTKLFIDP  587 (590)
Q Consensus       528 i~~~wk~ln~e~l~~-~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~p  587 (590)
                      |+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|+. ||++|++||++|
T Consensus       481 ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         481 IEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            999999999999997 789999999999999999999999999999966 999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-126
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-126
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-126
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-125
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-125
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-125
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-125
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-125
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-123
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-123
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 3e-73
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 2e-69
2j5c_A569 Rational Conversion Of Substrate And Product Specif 3e-69
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-63
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 9e-62
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 6e-57
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 3e-56
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 1e-19
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure 
Iteration: 1

 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/542 (43%), Positives = 333/542 (61%), Gaps = 14/542 (2%)
Query: 55  RPLGNFRPTIWKDGSISSPVLE--VETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLL 112
           RP+ +F P++W D  +S  +     E Y +  E +K+  + ML+A+     + + LI+++
Sbjct: 15  RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 113 CRLGVSYHFENEIEERLNHIFEMQPDLAAEKDC-DLYATAILFRVFRQHGFNVSSGVFNK 171
            RLG+SYHFE EI+E L+ I+          +C DL  +A+ FR+ RQHGFN+S  +F+K
Sbjct: 75  ERLGISYHFEKEIDEILDQIYNQN------SNCNDLCTSALQFRLLRQHGFNISPEIFSK 128
Query: 172 FKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFTTAHLKSMAAPNLDQNLA 231
           F+D +G FKESL SD  G+L+LYEA+H+R H +DILE+AL F+T HL+S AAP+L   L 
Sbjct: 129 FQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES-AAPHLKSPLR 187
Query: 232 KHINDALEQPLHMGVPRIEAHKFIS-FYEHDDSKNDTLLKFAKLDFNRVQLLHQQELAYI 290
           + +  ALEQ LH GVPR+E   FIS  Y+ + SKN+ LL+FAKLDFN +Q+LH+QELA +
Sbjct: 188 EQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQV 247
Query: 291 TRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKXXXXXXXXXXXXXXX 350
           +RW K L+F +T  Y+RDR VE Y W++  YFEP +S+ R++  K               
Sbjct: 248 SRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAY 307
Query: 351 GTFGELQRFTDAVERWDINCVSELPEYMKPLYGAXXXXXXXXXXXXXXXGRSYSVSFTKD 410
           GT  EL+ +TDA++RWDIN +  LP+YMK  Y A               GRS+ V    +
Sbjct: 308 GTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIE 367
Query: 411 MMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWL 470
            MK VVR Y VE+ WF EGY PP  E +SNA+ T T +     +Y+G+      D +EWL
Sbjct: 368 RMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATEQD-FEWL 426
Query: 471 RSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIAD 530
              PKI+ AS  + R+I D  + + E+ RG +A+ +E  M++YG S +E   +F+ M   
Sbjct: 427 SKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAET 486
Query: 531 GWKDINEECMRPTIVPMRLLNVIVNIARLVEVFY-KKMDGVTNPE-YLKDHVTKLFIDPI 588
            WKDINE  +RPT V    L  I+N+AR+VEV Y   +DG T+PE  LK H+  L +D I
Sbjct: 487 AWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSI 546
Query: 589 LV 590
            +
Sbjct: 547 KI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-180
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-178
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-153
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-152
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-148
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-102
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 1e-26
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-25
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 1e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  542 bits (1398), Expect = 0.0
 Identities = 230/555 (41%), Positives = 356/555 (64%), Gaps = 7/555 (1%)

Query: 36  TNSPSKVLCLAYKNNQENDRPLGNFRPTIWKDGSISSPVLEVET-YDKLNEEMKDHVKEM 94
           +            +N++  RP  +F+P+IW D  ++ P   ++   +K ++++K+ V++M
Sbjct: 3   SQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAETEKRHQQLKEEVRKM 62

Query: 95  LVASRNDPVEEVVLINLLCRLGVSYHFENEIEERLNHIFEMQPDLAAEKDCDLYATAILF 154
           +VA   +  +++  I+ + RLGVSYHF  EIE+ L +I+    D     + DLY T+I F
Sbjct: 63  IVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNND----AENDLYTTSIRF 118

Query: 155 RVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGEDILEEALTFT 214
           R+ R+HG+NVS  VFNKFKD  GNFK S+TSD RG+L LY+A++LRVHGEDIL+EA++FT
Sbjct: 119 RLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFT 178

Query: 215 TAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKL 274
           T HL      +LD  L++ ++ AL+Q +  G+PR+EA  ++S Y+  +S N  LL+FAK+
Sbjct: 179 THHLSLAV-ASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKI 237

Query: 275 DFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFT 334
           DFN +Q LH++EL+ I RW K L+F     Y+RDR VE Y W    YFEP +S GR + T
Sbjct: 238 DFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLT 297

Query: 335 KIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNN 394
           K+  +  I+DDTYD+Y T+ EL  +T+A+ERWDI C+ E+PEYMKP Y ALL++++E+  
Sbjct: 298 KVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQ 357

Query: 395 ELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVTGTCFLDPAAA 454
            +AE GR Y V + K+ M  + ++Y VEA+W  + Y P F+E  +NA+ T    +    +
Sbjct: 358 LVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITS 417

Query: 455 YIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYG 514
           ++G+GDI   + ++W  S PKI+ AS  + R + D+  +K +  R    S +E YM+EYG
Sbjct: 418 FVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYG 477

Query: 515 TSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPE 574
            + +E  + F K +   WKD+N+E ++PT +P  +LN  +N+AR+++V Y++ DG T   
Sbjct: 478 VTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVG 537

Query: 575 Y-LKDHVTKLFIDPI 588
              K  +T L I+PI
Sbjct: 538 KAAKGGITSLLIEPI 552
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.74
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 96.9
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=9e-168  Score=1381.98  Aligned_cols=540  Identities=42%  Similarity=0.797  Sum_probs=498.2

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCcCC-CcchhhhHHHHHHHHHHHHHHHHhhcCCCcccchhHhHHHhhhCcccccHHH
Q 047877           46 AYKNNQENDRPLGNFRPTIWKDGSISS-PVLEVETYDKLNEEMKDHVKEMLVASRNDPVEEVVLINLLCRLGVSYHFENE  124 (590)
Q Consensus        46 ~~~~~~~~~r~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~e~lk~~vr~~l~~~~~~~~~~l~lID~lqrLGi~~hFe~E  124 (590)
                      +.+.+.++.||+||||||+|||+||++ +++..+.+.+|+++||++||+||.+...|+.++|+|||+||||||+|||++|
T Consensus        13 ~~~~~~~~~R~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~E   92 (554)
T 3g4d_A           13 PLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKE   92 (554)
T ss_dssp             ------------CCCCCCTTTTTTTSCCC---CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHH
T ss_pred             hhhccCCCCCCCCCCCccccccccccCCCchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHH
Confidence            333445568999999999999999998 3334677899999999999999974357899999999999999999999999


Q ss_pred             HHHHHHHHHhhCCccccCCCCChhhHHHHHHHhhhcCccccccccccccccccccccccccChHHHhhHhhhcccCCCCc
Q 047877          125 IEERLNHIFEMQPDLAAEKDCDLYATAILFRVFRQHGFNVSSGVFNKFKDHDGNFKESLTSDARGMLSLYEATHLRVHGE  204 (590)
Q Consensus       125 I~~~L~~iy~~~~~~~~~~~~DL~~~Al~FRLLR~~Gy~vS~Dvf~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE  204 (590)
                      |+++|++||+.  +  ..++.||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|||
T Consensus        93 I~~~L~~i~~~--~--~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE  168 (554)
T 3g4d_A           93 IEDELENIYHN--N--NDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGE  168 (554)
T ss_dssp             HHHHHHHHHHS--C--CCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHhc--c--CCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCc
Confidence            99999999985  1  2133699999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHhcCCccCCchhhhHhhhHhhccCCCcCCHHHHHHHhhhhHHHhhhhH
Q 047877          205 DILEEALTFTTAHLKSMAAPNLDQNLAKHINDALEQPLHMGVPRIEAHKFISFYEHDDSKNDTLLKFAKLDFNRVQLLHQ  284 (590)
Q Consensus       205 ~iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq  284 (590)
                      +|||||+.||++||++.+. +++++|+++|+|||++|||+++||+|||+||++|++++++|++||||||||||+||++||
T Consensus       169 ~iLdeA~~fs~~~L~~~~~-~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq  247 (554)
T 3g4d_A          169 DILDEAISFTTHHLSLAVA-SLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHR  247 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHST-TCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999887 677889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHhhh
Q 047877          285 QELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVE  364 (590)
Q Consensus       285 ~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~viDD~fD~ygt~eEl~~ft~ave  364 (590)
                      +||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++||+||+
T Consensus       248 ~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~  327 (554)
T 3g4d_A          248 KELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIE  327 (554)
T ss_dssp             HHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            99999999999999988999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHhhhhcccc
Q 047877          365 RWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVT  444 (590)
Q Consensus       365 rWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~~~~S  444 (590)
                      |||++++++||+|||+||.+++++++|+++++.++||+++++|++++|+++++||++||+|+++||+||+||||+||++|
T Consensus       328 RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vS  407 (554)
T 3g4d_A          328 RWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPT  407 (554)
T ss_dssp             HCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGG
T ss_pred             hcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhcccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCccchhhhhhhccCCCHHHHHHHH
Q 047877          445 GTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVASVVESYMKEYGTSGEETAEEF  524 (590)
Q Consensus       445 sg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i  524 (590)
                      +|+++++++++++||+.+|+|+++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|||++++
T Consensus       408 sg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i  487 (554)
T 3g4d_A          408 CGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVF  487 (554)
T ss_dssp             SCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHH
T ss_pred             ehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhhhhchhcccCCCCCCchh-HHHHHHHHhccccCC
Q 047877          525 KKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKMDGVTNPEY-LKDHVTKLFIDPILV  590 (590)
Q Consensus       525 ~~mi~~~wk~ln~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~Dg~t~~~~-~k~~i~~ll~~pi~i  590 (590)
                      ++||+++||+||++|++++++|++|+++++|+||++++||+++||||.|+. ||++|++||++||++
T Consensus       488 ~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          488 NKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            999999999999999998899999999999999999999999999999965 999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 590
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-128
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-123
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 3e-69
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 4e-66
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 8e-45
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 4e-31
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  378 bits (971), Expect = e-128
 Identities = 97/326 (29%), Positives = 152/326 (46%), Gaps = 2/326 (0%)

Query: 265 NDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEP 324
           N  + + AKL+FN +Q  HQQEL  ++RW   L F     + RDR VE + W+V  +   
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 325 HFSRGRIIFTKIYLLLLIIDDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGA 384
                R +   I +L  +IDD YD YGT  EL+ FTD  +RWD   ++ LP YM+  Y  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 385 LLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEAQWFREGYVPPFDERMSNAIVT 444
           + N   +   ++ +E   + + + +  +  +V AYF EA+W+  GY P  DE ++ A ++
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 445 GTCFLDPAAAYIGLGD-IAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVA 503
                  +  Y    +        + L     I+  +  + RL  DL ++  E  RG V 
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 504 SVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVF 563
             ++ YMKE   S EE  E  K +I + WKD+N         P  ++    NI R+ +  
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFI 301

Query: 564 YKKMDGVTNPE-YLKDHVTKLFIDPI 588
           Y   DG         +H+  L  +P 
Sbjct: 302 YLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.36
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=1.8e-98  Score=784.51  Aligned_cols=326  Identities=46%  Similarity=0.841  Sum_probs=311.0

Q ss_pred             CCHHHHHHHhhhhHHHhhhhHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHhhhhccccCCCCcchhHHHHHHHHHHHHh
Q 047877          264 KNDTLLKFAKLDFNRVQLLHQQELAYITRWMKGLNFGSTYSYSRDRTVEIYLWSVAQYFEPHFSRGRIIFTKIYLLLLII  343 (590)
Q Consensus       264 ~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yfw~~a~~feP~~s~~Ri~laK~~~l~~vi  343 (590)
                      .|++||||||||||+||++||+||+.++|||+++|+.+++||||||++|||||++|++|||+||.+|+++||++++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~   80 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhh
Confidence            58999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hhhcccCCCHHHHHHHHHhhhhcCcccccCCCCchHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Q 047877          344 DDTYDAYGTFGELQRFTDAVERWDINCVSELPEYMKPLYGALLNLFDELNNELAEEGRSYSVSFTKDMMKGVVRAYFVEA  423 (590)
Q Consensus       344 DD~fD~ygt~eEl~~ft~averWD~~~~~~lPeymk~~~~al~~t~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA  423 (590)
                      ||+||+|||+||++.||+||+|||.++++.||+|||+||.+++++++|++.++.++||.+++++++++|++++++|++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~EA  160 (328)
T d5easa2          81 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES  160 (328)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             HHhhCCCCCChHHhhhhcccccccchHHHHHHHhcCCCcchhHHHhhhchhHHHHHHhhhhhhhcCcccchhhhhcCCcc
Q 047877          424 QWFREGYVPPFDERMSNAIVTGTCFLDPAAAYIGLGDIAGIDAYEWLRSQPKIMTASFTLSRLIADLVSNKAEQERGHVA  503 (590)
Q Consensus       424 kW~~~g~iPtleEYl~~~~~Ssg~~~~~~~~~~~~g~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~kkE~~rG~~~  503 (590)
                      +|+++||+||+||||++|.+|+|+++++++++++||. +++|.++|+.++|+|+++++.|+||+|||+|+++|+++||++
T Consensus       161 ~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~~  239 (328)
T d5easa2         161 TWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA  239 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCCC
Confidence            9999999999999999999999999999999999998 577889999999999999999999999999999999999999


Q ss_pred             chhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHHHhhhhchhcccC-CCCCCchh-HHHHHH
Q 047877          504 SVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPMRLLNVIVNIARLVEVFYKKM-DGVTNPEY-LKDHVT  581 (590)
Q Consensus       504 n~V~cyMke~g~S~EeA~~~i~~mi~~~wk~ln~e~l~~~~~p~~~~~~~~N~aR~~~~~Y~~~-Dg~t~~~~-~k~~i~  581 (590)
                      |+|+|||+|+|+|+|||+++++++|+++||+||+++++++++|++++++++|+||+++++|++| ||||+|++ +|++|+
T Consensus       240 s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~i~  319 (328)
T d5easa2         240 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHII  319 (328)
T ss_dssp             CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHHHH
T ss_pred             eeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987 99999986 999999


Q ss_pred             HHhccccCC
Q 047877          582 KLFIDPILV  590 (590)
Q Consensus       582 ~ll~~pi~i  590 (590)
                      +||++||||
T Consensus       320 ~ll~epi~~  328 (328)
T d5easa2         320 NLLVDSIKI  328 (328)
T ss_dssp             HHHTCCCCC
T ss_pred             HHhccCCcC
Confidence            999999997
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure