Citrus Sinensis ID: 047927

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000-----
Protein Sequence
MVLVSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNSSKALPSAPASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSRK
Secondary Structure (PSIPRED)
cEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccEEEEEcccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccHHHHccccccccEEEcccccccccccHHHHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccEEEcccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEEccccccccccccEEEcccccccccccccccccccEEEcccccccccccHHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccccccccccEEEccccccccccccccccccccEEEEEccccccEEcccccccccccccEEEcccccccccccHHHHHcccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHccccccccccccccccccEEEEEEccccccEEEEEEEEEEcccHHHHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHcccccccccHccccccccccccEEEEEEccccEEEEEEcccccccccccccHHHHcHHHHcEEEccccccccccccHHHcccccccEEEcccccccccccHHHHcccccEEEEcccccccccccccccccHHHHHHHcccccEEEcccccccccccHHHHHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHccccccEEEEccccccccccHHHHcccccEEEEEccccccccccccHccccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccEEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccccEEEcccccccccccHHHHccccccEEEEccccccccccHHHHHHHccccEEEccccccccccccccccccHHHHHHHHHccccccccccccccccEEEEcccccccccccHHHHccccccEEEEEcccccccccccccccccccccEEEEcccccccccccccccccEEEEEccccccccccHHHccccccEEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEEEcccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEcccccHHHHHHccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvlvsgqcqsDQQSLLLQMKSRLTFDSSVSFRMVQwsqsndcctwsgvdcdeagrvigldlseesisagidnsssLFSLKYLQSLNLAFNMFnateipsglgnltnlttlnlsnagfagqipiqvsGMTRLVTLDLsgmyfvraplklenpnlSGLLQNLAELRELYLdgvnisapgIEWCQALSSLVpklqvlslsgcflsgpvdpslsnlrslSVIRLdmndlyspvpefLADFSNLTSLYLsscglhgafpekilqlptletLDLSYNELlqgslpdfhqnLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLcnfngpiptsmsdlSQLVYLDMsfnhfsgpipslhmfrNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLshnnlggsipqslfelPMVQHLLLadnqfdghvTEISNAssslldtldlsdnnlegpiplsffELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAvvagssvycfppllttLSLAScklsaipnlrkqtklyhldlsdnqisgeipnwlwkigkdsfnhlnlshnllvsleqpysisdltslsvldlhsnqiqgkipplppnaayvdysgnnftssipvdigsFMSLSIFFSFsknsltgvipesicnATNLLVLDLSYNylsgmiptclinmsdsqlgVLNLrrnnlngtvsatfpancslrtldlngnqlegmvpkslanCSVLEIldlgnnqfddtfpcwvknasRLHVLILRSnnffgniscprynvswpmLQIIDLAsnkfsgrlpqKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSidfsrnnfegpipeEMGLLQSLCALNlshnaltgsipsliGNLREIESLDlsmnnlsgtipAQLASLNFLSVLNLSYNhlvgriptstqLQSFLATsfegndrlwgpplnvcptnsskalpsapastdEIDWFFMAMAIGFAVGFGSvvaplmfsrk
Flexible Loop (DISEMBL)
mvlvsgqcqsdqQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNSSKALPSAPASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSRK
Low Complexity Region (SEG)
MVLVsgqcqsdqqslllqMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPsglgnltnlttlnlsnAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIsnassslldtldlsdnnlEGPIPLSFFElknlkilllssnkFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFnhlnlshnllvslEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGsfmslsiffsfsKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQlgvlnlrrnnlngTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNSSKALPSAPASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSRK
Disordered region (IsUnstruct)
*********************RLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVC***************DEIDWFFMAMAIGFAVGFGSVVAPLMF***
Disordered Region (DISOPRED)
MVLVSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG**QSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWG***************************FMAMAIGFAVGFGSVVAPLMFSRK
Disordered Region (DISEMBL)
************QSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNS*********STDEIDWFFMAMAIGFAVGFGSVVAPLMFSRK
Disordered Region (DISPRO)
*VL*SGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCP**************DEIDWFFMAMAIGFAVGFGSVVAPLMFSRK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLVSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNSSKALPSAPASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1005	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.690	0.819	0.361	1e-92
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.850	0.684	0.308	8e-79
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.720	0.578	0.330	2e-74
Q9FL28	1173	LRR receptor-like serine/	no	no	0.690	0.591	0.333	1e-67
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.641	0.585	0.307	4e-62
O49318	1124	Probable leucine-rich rep	no	no	0.634	0.567	0.303	7e-62
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.640	0.540	0.312	1e-58
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.613	0.543	0.319	3e-58
O82318	960	Probably inactive leucine	no	no	0.564	0.590	0.342	1e-55
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.650	0.594	0.307	6e-55

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  342 bits (876), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 262/724 (36%), Positives = 372/724 (51%), Gaps = 30/724 (4%)

Query: 287 LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS 346
           L  L L+  N  G +P S+ NL +L+ V  Y   F G IP S+ +L+QL +L ++ N  +
Sbjct: 112 LRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLT 171

Query: 347 GPIPS-LHMFRNLAYLDLSYNIFTGGI-SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFEL 404
           G IPS L     L  L+L  N   G I  SIG   L  L ++ L+ NNL G IP SL  L
Sbjct: 172 GEIPSSLGNLSRLVNLELFSNRLVGKIPDSIG--DLKQLRNLSLASNNLIGEIPSSLGNL 229

Query: 405 PMVQHLLLADNQFDGHV-TEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSS 463
             + HL+L  NQ  G V   I N     L  +   +N+L G IP+SF  L  L I +LSS
Sbjct: 230 SNLVHLVLTHNQLVGEVPASIGNLIE--LRVMSFENNSLSGNIPISFANLTKLSIFVLSS 287

Query: 464 NKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSA---IP 520
           N F  T   D +    NL   D+SYN  +     S+   P L  ++ L   + +      
Sbjct: 288 NNFTSTFPFD-MSIFHNLEYFDVSYNSFSGPFPKSLLLIPSL-ESIYLQENQFTGPIEFA 345

Query: 521 NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLS 580
           N    TKL  L L  N++ G IP  + ++   +   L++SHN       P +IS L +L 
Sbjct: 346 NTSSSTKLQDLILGRNRLHGPIPESISRLL--NLEELDISHNNFTGAIPP-TISKLVNLL 402

Query: 581 VLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIP 640
            LDL  N ++G++P        +  S N+F+S    +     +L      + NS  G IP
Sbjct: 403 HLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSF--ENTSQEEALIEELDLNSNSFQGPIP 460

Query: 641 ESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR 700
             IC  ++L  LDLS N  SG IP+C+ N S S +  LNL  NN +GT+   F     L 
Sbjct: 461 YMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGS-IKELNLGDNNFSGTLPDIFSKATELV 519

Query: 701 TLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGN 760
           +LD++ NQLEG  PKSL NC  LE++++ +N+  D FP W+++   LHVL LRSN F+G 
Sbjct: 520 SLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGP 579

Query: 761 ISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLS 820
           +     ++ +  L+IID++ N FSG LP  +  N + M         E+      F   +
Sbjct: 580 LYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTT----LTEEMDQYMTEFWRYA 635

Query: 821 QAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNAL 880
            +YY +   V  KG++M   +I   F +IDFS N   G IPE +G L+ L  LNLS NA 
Sbjct: 636 DSYYHEMEMVN-KGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAF 694

Query: 881 TGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQS 940
           T  IP  + NL ++E+LD+S N LSG IP  LA+L+FLS +N S+N L G +P  TQ Q 
Sbjct: 695 TSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQR 754

Query: 941 FLATSFEGNDRLWGPPLNVC----PTNSSKALPSAPASTDE--IDWFFMAMAIGFAVGFG 994
              +SF  N  L+G   ++C      N +  LP   +  +E   +W   A+A G  V  G
Sbjct: 755 QKCSSFLDNPGLYGLE-DICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCG 813

Query: 995 SVVA 998
            V+ 
Sbjct: 814 LVIG 817

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  296 bits (757), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 311/1007 (30%), Positives = 473/1007 (46%), Gaps = 152/1007 (15%)

Query: 16   LLQMKSRLTFDSSVSFRMVQWSQSN-DCCTWSGVDCDEAG--RVIGLDLSEESISAGIDN 72
            LL++K  L  +      + QW+  N + C+W+GV CD  G  RVI L+L+   ++  I  
Sbjct: 30   LLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSI-- 87

Query: 73   SSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLV 132
             S  F                        G   NL  L+LS+    G IP  +S +T L 
Sbjct: 88   -SPWF------------------------GRFDNLIHLDLSSNNLVGPIPTALSNLTSLE 122

Query: 133  TLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQ 192
            +L     +     L  E P+  G L N+  LR     G N     I   + L +LV  LQ
Sbjct: 123  SL-----FLFSNQLTGEIPSQLGSLVNIRSLR----IGDNELVGDIP--ETLGNLV-NLQ 170

Query: 193  VLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGA 252
            +L+L+ C L+GP+   L  L  +  + L  N L  P+P  L + S+LT    +   L+G 
Sbjct: 171  MLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGT 230

Query: 253  FPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIKNLKNL 311
             P ++ +L  LE L+L+ N  L G +P     +S L+ L L A    G++P S+ +L NL
Sbjct: 231  IPAELGRLENLEILNLANNS-LTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNL 289

Query: 312  SRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS--LHMFRNLAYLDLSYNIFT 369
              ++    N  G IP    ++SQL+ L ++ NH SG +P        NL  L LS    +
Sbjct: 290  QTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLS 349

Query: 370  GGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVT-EISNAS 428
            G I  +   +  +L  +DLS+N+L GSIP++LFEL  +  L L +N  +G ++  ISN +
Sbjct: 350  GEI-PVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLT 408

Query: 429  SSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSY 488
            +  L  L L  NNLEG +P     L+ L++L L  N+F G I  + I    +L  +D+  
Sbjct: 409  N--LQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQE-IGNCTSLKMIDMFG 465

Query: 489  NRLAVVAGSSVYCFPPLLTTLSLASCKL-SAIP-NLRKQTKLYHLDLSDNQISGEIPNWL 546
            N        S+      L  L L   +L   +P +L    +L  LDL+DNQ+SG IP+  
Sbjct: 466  NHFEGEIPPSIGRLKE-LNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPS-- 522

Query: 547  WKIGKDSFNHLNLSHNLLV---SLEQ--PYSISDLTSLSVLDLHSNQIQGKIPPLPPNAA 601
                  SF  L     L++   SL+   P S+  L +L+ ++L  N++ G I PL  +++
Sbjct: 523  ------SFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSS 576

Query: 602  YV--DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYL 659
            Y+  D + N F   IP+++G+  +L       KN LTG IP ++     L +LD+S N L
Sbjct: 577  YLSFDVTNNGFEDEIPLELGNSQNLD-RLRLGKNQLTGKIPWTLGKIRELSLLDMSSNAL 635

Query: 660  SGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLAN 719
            +G IP  L+                              L  +DLN N L G +P  L  
Sbjct: 636  TGTIPLQLVLCK--------------------------KLTHIDLNNNFLSGPIPPWLGK 669

Query: 720  CSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLA 779
             S L  L L +NQF ++ P  + N ++L VL L  N+  G+I  P+   +   L +++L 
Sbjct: 670  LSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSI--PQEIGNLGALNVLNLD 727

Query: 780  SNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKL 839
             N+FSG LPQ       AM    G+              LS+ Y            E++L
Sbjct: 728  KNQFSGSLPQ-------AM----GK--------------LSKLY------------ELRL 750

Query: 840  AKILNIFTSIDFSRNNFEGPIPEEMGLLQSL-CALNLSHNALTGSIPSLIGNLREIESLD 898
            ++            N+  G IP E+G LQ L  AL+LS+N  TG IPS IG L ++E+LD
Sbjct: 751  SR------------NSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLD 798

Query: 899  LSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLN 958
            LS N L+G +P  +  +  L  LN+S+N+L G++    Q   + A SF GN  L G PL+
Sbjct: 799  LSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLS 856

Query: 959  VCPTNSSKALPSAPASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSRK 1005
             C    S       ++   +     A++   A+G   +V  L F ++
Sbjct: 857  RCNRVRSNNKQQGLSARSVV--IISAISALTAIGLMILVIALFFKQR 901

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  281 bits (720), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 257/778 (33%), Positives = 382/778 (49%), Gaps = 54/778 (6%)

Query: 200 FLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQ 259
            LSG +   L +L +L  ++L  N+L   +PE   +  NL  L L+SC L G  P +  +
Sbjct: 131 LLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGR 190

Query: 260 LPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN-FSGILPDSIKNLKNLSRVEFYL 318
           L  L+TL L  NEL +G +P    N +   L  +A N  +G LP  +  LKNL  +    
Sbjct: 191 LVQLQTLILQDNEL-EGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGD 249

Query: 319 CNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS-LHMFRNLAYLDLSYNIFTGGISSIGW 377
            +F+G IP+ + DL  + YL++  N   G IP  L    NL  LDLS N  TG I    W
Sbjct: 250 NSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFW 309

Query: 378 EQLLNLFHVDLSHNNLGGSIPQSLFEL-PMVQHLLLADNQFDGHV-TEISNASSSLLDTL 435
            ++  L  + L+ N L GS+P+++      ++ L L++ Q  G +  EISN  S  L  L
Sbjct: 310 -RMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQS--LKLL 366

Query: 436 DLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVA 495
           DLS+N L G IP S F+L  L  L L++N   GT+   +I  L NL    L +N L    
Sbjct: 367 DLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLS-SSISNLTNLQEFTLYHNNLEGKV 425

Query: 496 GSSVYCFPPLLTTLSLASCKLSA-IP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDS 553
              +  F   L  + L   + S  +P  +   T+L  +D   N++SGEIP+ + ++ KD 
Sbjct: 426 PKEI-GFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRL-KD- 482

Query: 554 FNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP----LPPNAAYVDYSGNN 609
              L+L  N LV    P S+ +   ++V+DL  NQ+ G IP     L     ++ Y+ N+
Sbjct: 483 LTRLHLRENELVG-NIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYN-NS 540

Query: 610 FTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLIN 669
              ++P  + +  +L+   +FS N   G I   +C +++ L  D++ N   G IP  L  
Sbjct: 541 LQGNLPDSLINLKNLT-RINFSSNKFNGSI-SPLCGSSSYLSFDVTENGFEGDIPLEL-- 596

Query: 670 MSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG 729
              + L  L L +N   G +  TF     L  LD++ N L G++P  L  C  L  +DL 
Sbjct: 597 GKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLN 656

Query: 730 NNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQ 789
           NN      P W+     L  L L SN F G++    ++++  +   +D   N  +G +PQ
Sbjct: 657 NNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLD--GNSLNGSIPQ 714

Query: 790 KWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSI 849
           + + NL+A+                  LNL +      +  TI     KL+K+      +
Sbjct: 715 E-IGNLQALNA----------------LNLEENQLSGPLPSTIG----KLSKLF----EL 749

Query: 850 DFSRNNFEGPIPEEMGLLQSL-CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTI 908
             SRN   G IP E+G LQ L  AL+LS+N  TG IPS I  L ++ESLDLS N L G +
Sbjct: 750 RLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEV 809

Query: 909 PAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNSSK 966
           P Q+  +  L  LNLSYN+L G++    Q   + A +F GN  L G PL+ C    SK
Sbjct: 810 PGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPLSHCNRAGSK 865

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  258 bits (659), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 250/749 (33%), Positives = 365/749 (48%), Gaps = 55/749 (7%)

Query: 238 NLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLP-DFHQNLSLETLILSATN 296
           ++ S+ L    L G     I  L  L+ LDL+ N    G +P +  +   L  LIL    
Sbjct: 73  HVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSF-TGKIPAEIGKLTELNQLILYLNY 131

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
           FSG +P  I  LKN+  ++      +G +P  +   S LV +   +N+ +G IP      
Sbjct: 132 FSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIP--ECLG 189

Query: 357 NLAYLDL---SYNIFTGGIS-SIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLL 412
           +L +L +   + N  TG I  SIG   L NL  +DLS N L G IP+    L  +Q L+L
Sbjct: 190 DLVHLQMFVAAGNHLTGSIPVSIG--TLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVL 247

Query: 413 ADNQFDGHV-TEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIE 471
            +N  +G +  EI N SS  L  L+L DN L G IP     L  L+ L +  NK   +I 
Sbjct: 248 TENLLEGDIPAEIGNCSS--LVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIP 305

Query: 472 LDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLS-----AIPNLRKQT 526
             ++ RL  L  L LS N L V   S    F   L  L+L S   +     +I NLR  T
Sbjct: 306 -SSLFRLTQLTHLGLSENHL-VGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLT 363

Query: 527 KLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLS-HNLLVSLEQPYSISDLTSLSVLDLH 585
            L    +  N ISGE+P  L  +     N  NLS H+ L++   P SIS+ T L +LDL 
Sbjct: 364 VLT---VGFNNISGELPADLGLLT----NLRNLSAHDNLLTGPIPSSISNCTGLKLLDLS 416

Query: 586 SNQIQGKIPPL--PPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESI 643
            NQ+ G+IP      N  ++    N+FT  IP DI +  +L    S + N+LTG +   I
Sbjct: 417 HNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETL-SVADNNLTGTLKPLI 475

Query: 644 CNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLD 703
                L +L +SYN L+G IP  + N+ D  L +L L  N   G +         L+ L 
Sbjct: 476 GKLQKLRILQVSYNSLTGPIPREIGNLKD--LNILYLHSNGFTGRIPREMSNLTLLQGLR 533

Query: 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISC 763
           +  N LEG +P+ + +  +L +LDL NN+F    P        L  L L+ N F G+I  
Sbjct: 534 MYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSI-- 591

Query: 764 PRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVD--------EGRSQSELKHLQ-Y 814
           P    S  +L   D++ N  +G +P + L +L+ M +          G    EL  L+  
Sbjct: 592 PASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMV 651

Query: 815 RFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM-GLLQSLCAL 873
           + ++LS   +  +I  +++  +       N+FT +DFS+NN  G IP+E+   +  + +L
Sbjct: 652 QEIDLSNNLFSGSIPRSLQACK-------NVFT-LDFSQNNLSGHIPDEVFQGMDMIISL 703

Query: 874 NLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIP 933
           NLS N+ +G IP   GN+  + SLDLS NNL+G IP  LA+L+ L  L L+ N+L G +P
Sbjct: 704 NLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVP 763

Query: 934 TSTQLQSFLATSFEGNDRLWG--PPLNVC 960
            S   ++  A+   GN  L G   PL  C
Sbjct: 764 ESGVFKNINASDLMGNTDLCGSKKPLKPC 792

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  240 bits (613), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 245/796 (30%), Positives = 349/796 (43%), Gaps = 151/796 (18%)

Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
           P++  L+LS   LSG + PS+  L  L  + L  N L   +P+ + + S+L  L L++  
Sbjct: 73  PEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQ 132

Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNL 308
             G  P +I +L                        +SLE LI+     SG LP  I NL
Sbjct: 133 FDGEIPVEIGKL------------------------VSLENLIIYNNRISGSLPVEIGNL 168

Query: 309 KNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIF 368
            +LS++  Y  N +G +P S+ +L +L       N  SG +PS                 
Sbjct: 169 LSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPS----------------E 212

Query: 369 TGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHV-TEISNA 427
            GG  S        L  + L+ N L G +P+ +  L  +  ++L +N+F G +  EISN 
Sbjct: 213 IGGCES--------LVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNC 264

Query: 428 SSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLS 487
           +S  L+TL L  N L GPIP    +L++L+ L L  N   GTI                 
Sbjct: 265 TS--LETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTI----------------- 305

Query: 488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLW 547
                          P  +  LS A                  +D S+N ++GEIP  L 
Sbjct: 306 ---------------PREIGNLSYA----------------IEIDFSENALTGEIPLELG 334

Query: 548 KIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYV---- 603
            I  +    L L  N L     P  +S L +LS LDL  N + G   P+P    Y+    
Sbjct: 335 NI--EGLELLYLFENQLTG-TIPVELSTLKNLSKLDLSINALTG---PIPLGFQYLRGLF 388

Query: 604 --DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSG 661
                 N+ + +IP  +G +  L +    S N L+G IP  +C  +N+++L+L  N LSG
Sbjct: 389 MLQLFQNSLSGTIPPKLGWYSDLWVL-DMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSG 447

Query: 662 MIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCS 721
            IPT +       L  L L RNNL G   +      ++  ++L  N+  G +P+ + NCS
Sbjct: 448 NIPTGITTCKT--LVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCS 505

Query: 722 VLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN 781
            L+ L L +N F    P  +   S+L  L + SN   G +    +N    MLQ +D+  N
Sbjct: 506 ALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCK--MLQRLDMCCN 563

Query: 782 KFSGRLPQKWLLNLEAMMVDEGRSQSELKHL-QYRFLNLSQAYYQDAITVTIKGLEMKLA 840
            FSG LP                  SE+  L Q   L LS       I V +  L     
Sbjct: 564 NFSGTLP------------------SEVGSLYQLELLKLSNNNLSGTIPVALGNLSR--- 602

Query: 841 KILNIFTSIDFSRNNFEGPIPEEMGLLQSL-CALNLSHNALTGSIPSLIGNLREIESLDL 899
                 T +    N F G IP E+G L  L  ALNLS+N LTG IP  + NL  +E L L
Sbjct: 603 -----LTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLL 657

Query: 900 SMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNV 959
           + NNLSG IP+  A+L+ L   N SYN L G IP    L++   +SF GN+ L GPPLN 
Sbjct: 658 NNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL---LRNISMSSFIGNEGLCGPPLNQ 714

Query: 960 CPTNSSKALPSAPAST 975
           C     +  P AP+ +
Sbjct: 715 C----IQTQPFAPSQS 726

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  239 bits (611), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 237/781 (30%), Positives = 344/781 (44%), Gaps = 143/781 (18%)

Query: 194 LSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAF 253
           L LS   LSG V PS+  L +L  + L  N L   +P  + + S L  ++L++    G+ 
Sbjct: 90  LDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSI 149

Query: 254 PEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSR 313
           P +I +L  L + ++  N+L                        SG LP+ I +L NL  
Sbjct: 150 PVEINKLSQLRSFNICNNKL------------------------SGPLPEEIGDLYNLEE 185

Query: 314 VEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGIS 373
           +  Y  N  GP+P S+ +L++L       N FSG IP+                      
Sbjct: 186 LVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPT---------------------- 223

Query: 374 SIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHV-TEISNASSSLL 432
            IG  + LNL  + L+ N + G +P+ +  L  +Q ++L  N+F G +  +I N +S  L
Sbjct: 224 EIG--KCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTS--L 279

Query: 433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
           +TL L  N+L GPIP     +K+LK L L  N+  GTI  +                   
Sbjct: 280 ETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKE------------------- 320

Query: 493 VVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKD 552
                                        L K +K+  +D S+N +SGEIP  L KI + 
Sbjct: 321 -----------------------------LGKLSKVMEIDFSENLLSGEIPVELSKISE- 350

Query: 553 SFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAA---YVDYSGNN 609
               L L  N L  +  P  +S L +L+ LDL  N + G IPP   N      +    N+
Sbjct: 351 -LRLLYLFQNKLTGI-IPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNS 408

Query: 610 FTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLIN 669
            +  IP  +G +  L +   FS+N L+G IP  IC  +NL++L+L  N + G IP  ++ 
Sbjct: 409 LSGVIPQGLGLYSPLWVV-DFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLR 467

Query: 670 MSDSQLGVLNLR--RNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD 727
                  +L LR   N L G          +L  ++L+ N+  G +P  +  C  L+ L 
Sbjct: 468 CKS----LLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLH 523

Query: 728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRL 787
           L  NQF    P  +   S L    + SN+  G I  P    +  MLQ +DL+ N F G L
Sbjct: 524 LAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPI--PSEIANCKMLQRLDLSRNSFIGSL 581

Query: 788 PQKWLLNLEAMMVDEGRSQSELKHL-QYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF 846
           P                   EL  L Q   L LS+  +   I  TI  L           
Sbjct: 582 P------------------PELGSLHQLEILRLSENRFSGNIPFTIGNLTH--------L 615

Query: 847 TSIDFSRNNFEGPIPEEMGLLQSL-CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS 905
           T +    N F G IP ++GLL SL  A+NLS+N  +G IP  IGNL  +  L L+ N+LS
Sbjct: 616 TELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLS 675

Query: 906 GTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVC-PTNS 964
           G IP    +L+ L   N SYN+L G++P +   Q+   TSF GN  L G  L  C P++S
Sbjct: 676 GEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSCDPSHS 735

Query: 965 S 965
           S
Sbjct: 736 S 736

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  229 bits (583), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 231/739 (31%), Positives = 345/739 (46%), Gaps = 95/739 (12%)

Query: 96  EIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSG 155
           +IP  + +L NL  L L+   F+G+IP ++  +  L TLDLSG             +L+G
Sbjct: 80  QIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGN------------SLTG 127

Query: 156 LLQNL-AELREL-YLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLR 213
           LL  L +EL +L YLD  +    G        SL P L  L +S   LSG + P +  L 
Sbjct: 128 LLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISL-PALSSLDVSNNSLSGEIPPEIGKLS 186

Query: 214 SLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL 273
           +LS + + +N     +P  + + S L +    SC  +G  P++I +L  L  LDLSYN  
Sbjct: 187 NLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNP- 245

Query: 274 LQGSLPD-FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDL 332
           L+ S+P  F +  +L  L L +    G++P  + N K+L  +     + +GP+P  +S++
Sbjct: 246 LKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLMLSFNSLSGPLPLELSEI 305

Query: 333 SQLVYLDMSFNHFSGPIPS-LHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHN 391
             L +     N  SG +PS +  ++ L  L L+ N F+G I     E    L H+ L+ N
Sbjct: 306 PLLTF-SAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPH-EIEDCPMLKHLSLASN 363

Query: 392 NLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFF 451
            L GSIP+ L     ++ + L+ N   G + E+ +  SSL + L L++N + G IP   +
Sbjct: 364 LLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELL-LTNNQINGSIPEDLW 422

Query: 452 ELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSL 511
           +L  L  L L SN F G I   ++ +  NL     SYNRL     + +            
Sbjct: 423 KLP-LMALDLDSNNFTGEIP-KSLWKSTNLMEFTASYNRLEGYLPAEI------------ 468

Query: 512 ASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPY 571
                           L  L LSDNQ++GEIP  + K+   S + LNL+ N+    + P 
Sbjct: 469 -----------GNAASLKRLVLSDNQLTGEIPREIGKL--TSLSVLNLNANMFQG-KIPV 514

Query: 572 SISDLTSLSVLDLHSNQIQGKIP-----------------------PLPPNAAY------ 602
            + D TSL+ LDL SN +QG+IP                       P  P+A +      
Sbjct: 515 ELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMP 574

Query: 603 ----------VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVL 652
                      D S N  +  IP ++G  + L +  S S N L+G IP S+   TNL +L
Sbjct: 575 DLSFLQHHGIFDLSYNRLSGPIPEELGECLVL-VEISLSNNHLSGEIPASLSRLTNLTIL 633

Query: 653 DLSYNYLSGMIPTCLINMSDS-QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEG 711
           DLS N L+G IP     M +S +L  LNL  N LNG +  +F    SL  L+L  N+L+G
Sbjct: 634 DLSGNALTGSIPK---EMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDG 690

Query: 712 MVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP 771
            VP SL N   L  +DL  N         +    +L  L +  N F G I     N++  
Sbjct: 691 PVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLT-- 748

Query: 772 MLQIIDLASNKFSGRLPQK 790
            L+ +D++ N  SG +P K
Sbjct: 749 QLEYLDVSENLLSGEIPTK 767

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  227 bits (579), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 230/720 (31%), Positives = 342/720 (47%), Gaps = 103/720 (14%)

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP------ 350
            SG + D I  L+ L ++     +FNG IPTS++  ++L+ + + +N  SG +P      
Sbjct: 80  LSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNL 139

Query: 351 -SLHMFR----------------NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNL 393
            SL +F                 +L +LD+S N F+G I S G   L  L  ++LS+N L
Sbjct: 140 TSLEVFNVAGNRLSGEIPVGLPSSLQFLDISSNTFSGQIPS-GLANLTQLQLLNLSYNQL 198

Query: 394 GGSIPQSLFELPMVQHLLLADNQFDGHV-TEISNASSSLLDTLDLSDNNLEGPIPLSFFE 452
            G IP SL  L  +Q+L L  N   G + + ISN SS  L  L  S+N + G IP ++  
Sbjct: 199 TGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSS--LVHLSASENEIGGVIPAAYGA 256

Query: 453 LKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLA 512
           L  L++L LS+N F GT+         +L  + L +N            F  ++   + A
Sbjct: 257 LPKLEVLSLSNNNFSGTVPFSLFCN-TSLTIVQLGFN-----------AFSDIVRPETTA 304

Query: 513 SCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYS 572
           +C+          T L  LDL +N+ISG  P WL  I   S  +L++S NL  S E P  
Sbjct: 305 NCR----------TGLQVLDLQENRISGRFPLWLTNI--LSLKNLDVSGNLF-SGEIPPD 351

Query: 573 ISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSK 632
           I +L  L  L L +N + G+                     IPV+I    SL +   F  
Sbjct: 352 IGNLKRLEELKLANNSLTGE---------------------IPVEIKQCGSLDV-LDFEG 389

Query: 633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSAT 692
           NSL G IPE +     L VL L  N  SG +P+ ++N+   QL  LNL  NNLNG+    
Sbjct: 390 NSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNL--QQLERLNLGENNLNGSFPVE 447

Query: 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLIL 752
             A  SL  LDL+GN+  G VP S++N S L  L+L  N F    P  V N  +L  L L
Sbjct: 448 LMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDL 507

Query: 753 RSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKW--LLNLEAMMVDEGRSQSEL- 809
              N  G +  P      P +Q+I L  N FSG +P+ +  L++L  + +       E+ 
Sbjct: 508 SKQNMSGEV--PVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIP 565

Query: 810 KHLQYRFLNLSQAYYQDAITVTI----------KGLEMKLAKILNIFTS----------I 849
           +   +  L +S +   + I+ +I          + LE++  +++    +          +
Sbjct: 566 QTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVL 625

Query: 850 DFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIP 909
           D  +NN  G IP E+    SL +L+L HN L+G IP     L  +  +DLS+NNL+G IP
Sbjct: 626 DLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIP 685

Query: 910 AQLASLNF-LSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLN-VCPTNSSKA 967
           A LA ++  L   N+S N+L G IP S   +    + F GN  L G PLN  C +++++ 
Sbjct: 686 ASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCESSTAEG 745

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score =  219 bits (557), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 218/636 (34%), Positives = 308/636 (48%), Gaps = 69/636 (10%)

Query: 386  VDLSHNNLGGSI-PQSLFELPMVQHLLLADNQFDGHV-TEISNASSSLLDTLDLSDNNLE 443
            +DLS  N+ G I   + F LP +Q + L++N   G +  +I   SS  L  L+LS+NN  
Sbjct: 77   LDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFS 136

Query: 444  GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFP 503
            G IP  F  L NL  L LS+N F G I  D I    NL  LDL  N   V+ G       
Sbjct: 137  GSIPRGF--LPNLYTLDLSNNMFTGEIYND-IGVFSNLRVLDLGGN---VLTGHVPGYLG 190

Query: 504  PL--LTTLSLASCKLSA-IP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGK-DSFNHLN 558
             L  L  L+LAS +L+  +P  L K   L  + L  N +SGEIP   ++IG   S NHL+
Sbjct: 191  NLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNNLSGEIP---YQIGGLSSLNHLD 247

Query: 559  LSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP---PNAAYVDYSGNNFTSSIP 615
            L +N L S   P S+ DL  L  + L+ N++ G+IPP      N   +D+S N+ +  IP
Sbjct: 248  LVYNNL-SGPIPPSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIP 306

Query: 616  VDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQL 675
              +    SL I   FS N+LTG IPE + +   L VL L  N  SG IP  L     + L
Sbjct: 307  ELVAQMQSLEILHLFS-NNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANL--GKHNNL 363

Query: 676  GVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD 735
             VL+L  NNL G +  T   +  L  L L  N L+  +P SL  C  LE + L NN F  
Sbjct: 364  TVLDLSTNNLTGKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSG 423

Query: 736  TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW--PMLQIIDLASNKFSGRLPQKWLL 793
              P        ++ L L +NN  GNI+      +W  P L+++DL+ NKF G LP     
Sbjct: 424  KLPRGFTKLQLVNFLDLSNNNLQGNIN------TWDMPQLEMLDLSVNKFFGELP----- 472

Query: 794  NLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSR 853
                   D  RS+      + + L+LS+      +    +GL M   +I+++    D S 
Sbjct: 473  -------DFSRSK------RLKKLDLSRNKISGVVP---QGL-MTFPEIMDL----DLSE 511

Query: 854  NNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLA 913
            N   G IP E+   ++L  L+LSHN  TG IPS     + +  LDLS N LSG IP  L 
Sbjct: 512  NEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLG 571

Query: 914  SLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNSSKAL-PSAP 972
            ++  L  +N+S+N L G +P +    +  AT+ EGN       +++C  NS+  L P   
Sbjct: 572  NIESLVQVNISHNLLHGSLPFTGAFLAINATAVEGN-------IDLCSENSASGLRPCKV 624

Query: 973  ASTDEIDWFFMAMAIGFAVGFGSVVAP----LMFSR 1004
                    +++ +   FA     +V+     L+F R
Sbjct: 625  VRKRSTKSWWLIITSTFAAFLAVLVSGFFIVLVFQR 660

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  216 bits (551), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 226/736 (30%), Positives = 333/736 (45%), Gaps = 82/736 (11%)

Query: 10  SDQQSLLLQMKSRLTFDSSVSFRMVQWSQ-SNDCCTWSGVDCDEAGRVIGLDLSEESISA 68
           +++  +LL+ K+   F +  +  +  W+Q  ++ C W+G+ C     V  +DL+  ++S 
Sbjct: 25  NEEGRVLLEFKA---FLNDSNGYLASWNQLDSNPCNWTGIACTHLRTVTSVDLNGMNLSG 81

Query: 69  GIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGM 128
            +  S  +  L  L+ LN++ N F +  IP  L    +L  L+L    F G IPIQ++ +
Sbjct: 82  TL--SPLICKLHGLRKLNVSTN-FISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMI 138

Query: 129 TRLVTLDLSGMY-FVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSL 187
             L  L L   Y F   P ++          NL+ L+EL +   N               
Sbjct: 139 ITLKKLYLCENYLFGSIPRQI---------GNLSSLQELVIYSNN--------------- 174

Query: 188 VPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSC 247
                        L+G + PS++ LR L +IR   N     +P  ++   +L  L L+  
Sbjct: 175 -------------LTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAEN 221

Query: 248 GLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIK 306
            L G+ P+++ +L  L  L L  N  L G +P    N+S LE L L    F+G +P  I 
Sbjct: 222 LLEGSLPKQLEKLQNLTDLILWQNR-LSGEIPPSVGNISRLEVLALHENYFTGSIPREIG 280

Query: 307 NLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS-LHMFRNLAYLDLSY 365
            L  + R+  Y     G IP  + +L     +D S N  +G IP       NL  L L  
Sbjct: 281 KLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFE 340

Query: 366 NIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIS 425
           NI  G I     E  L L  +DLS N L G+IPQ L  LP +  L L DNQ +G +  + 
Sbjct: 341 NILLGPIPRELGELTL-LEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLI 399

Query: 426 NASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLD 485
              S+    LD+S N+L GPIP  F   + L +L L SNK  G I  D ++  ++L +L 
Sbjct: 400 GFYSN-FSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRD-LKTCKSLTKLM 457

Query: 486 LSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNW 545
           L  N+L    GS     P  L  L                  L  L+L  N +SG I   
Sbjct: 458 LGDNQL---TGS----LPIELFNLQ----------------NLTALELHQNWLSGNISAD 494

Query: 546 LWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYV-- 603
           L K+   +   L L++N     E P  I +LT +   ++ SNQ+ G IP    +   +  
Sbjct: 495 LGKL--KNLERLRLANNNFTG-EIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQR 551

Query: 604 -DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM 662
            D SGN F+  I  ++G  + L I    S N LTG IP S  + T L+ L L  N LS  
Sbjct: 552 LDLSGNKFSGYIAQELGQLVYLEI-LRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSEN 610

Query: 663 IPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722
           IP  L  ++  Q+  LN+  NNL+GT+  +      L  L LN N+L G +P S+ N   
Sbjct: 611 IPVELGKLTSLQIS-LNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMS 669

Query: 723 LEILDLGNNQFDDTFP 738
           L I ++ NN    T P
Sbjct: 670 LLICNISNNNLVGTVP 685

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1005
359481298	1070	PREDICTED: LRR receptor-like serine/thre	0.995	0.934	0.584	0.0
359481300	1054	PREDICTED: leucine-rich repeat receptor	0.991	0.944	0.581	0.0
359481293	1197	PREDICTED: leucine-rich repeat receptor	0.996	0.836	0.582	0.0
359481304	1057	PREDICTED: LRR receptor-like serine/thre	0.996	0.947	0.563	0.0
147806063	1032	hypothetical protein VITISV_032508 [Viti	0.979	0.953	0.581	0.0
359481296	1075	PREDICTED: receptor-like protein 12-like	0.997	0.932	0.574	0.0
224139184	1032	predicted protein [Populus trichocarpa]	0.990	0.964	0.560	0.0
214011438	1128	GbVe [Gossypium barbadense]	0.988	0.880	0.561	0.0
237899607	1139	verticillium wilt disease resistance pro	0.995	0.877	0.542	0.0
255579302	1060	serine/threonine-protein kinase bri1, pu	0.993	0.941	0.543	0.0

>gi|359481298|ref|XP_003632604.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score = 1099 bits (2843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1016 (58%), Positives = 729/1016 (71%), Gaps = 16/1016 (1%)

Query: 1    MVLVSGQCQSD-------QQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEA 53
            + LVSG+C SD       Q SLLLQ+K+ L F+ + S ++V W+ S DCC+W GV  D  
Sbjct: 23   VALVSGECLSDGSICLEDQMSLLLQLKNTLKFNVAASSKLVSWNPSMDCCSWGGVTWDAT 82

Query: 54   GRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLS 113
            G V+ LDLS +SI  G +N+SS+FSL+YLQSLNLA N FN+++IPSG G L NL  LNLS
Sbjct: 83   GHVVALDLSSQSIYGGFNNTSSIFSLQYLQSLNLADNSFNSSQIPSGFGKLGNLMYLNLS 142

Query: 114  NAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNI 173
            NAGF+GQIPI+VS +T+LVT+D S  Y     LKLENPNL  L+QNL ELRELYL+GVNI
Sbjct: 143  NAGFSGQIPIEVSCLTKLVTIDFSVFYLGVPTLKLENPNLRMLVQNLTELRELYLNGVNI 202

Query: 174  SAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFL 233
            SA G EWCQALSS VP LQVLSL  C+LSGP+D SL  LRSLS IRLD N+  +PVPEFL
Sbjct: 203  SAQGKEWCQALSSSVPNLQVLSLPSCYLSGPLDSSLQKLRSLSSIRLDGNNFSAPVPEFL 262

Query: 234  ADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
            A+FSNLT L LSSCGL+G FPEKI Q+PTL+ LDLS N+LL GSLP+F QN SLETL+L 
Sbjct: 263  ANFSNLTQLRLSSCGLNGTFPEKIFQVPTLQILDLSNNKLLLGSLPEFPQNGSLETLVLP 322

Query: 294  ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLH 353
             T FSG +P+SI NLK L+R+E   CNF+GPIP S ++L+QLVYLD+S N FSGPIP   
Sbjct: 323  DTKFSGKVPNSIGNLKRLTRIELARCNFSGPIPNSTANLAQLVYLDLSENKFSGPIPPFS 382

Query: 354  MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLA 413
            + +NL  ++LS+N  TG I S   + L+NL  +DL  N+L GS+P  LF LP +Q + L+
Sbjct: 383  LSKNLTRINLSHNYLTGPIPSSHLDGLVNLVILDLRDNSLNGSLPMPLFSLPSLQKIQLS 442

Query: 414  DNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELD 473
            +NQF G +++ S    S+LDTLDLS NNLEG IP+S F+L+ L IL LSSNKF GT+ L 
Sbjct: 443  NNQFSGPLSKFS-VVPSVLDTLDLSSNNLEGQIPVSIFDLQCLNILDLSSNKFNGTVLLS 501

Query: 474  AIQRLRNLFRLDLSYNRLAV--VAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHL 531
            + Q+L NL  L LSYN L++    G+        LTTL LASCKL  +P+L  Q++L +L
Sbjct: 502  SFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLKLASCKLRTLPDLSTQSRLTYL 561

Query: 532  DLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTS-LSVLDLHSNQIQ 590
            DLSDNQI G IPNW+WKIG  S  HLNLSHNLL  L++P  +S+ T  LS+LDLHSNQ+ 
Sbjct: 562  DLSDNQICGNIPNWIWKIGNCSLAHLNLSHNLLEDLQEP--LSNFTPYLSILDLHSNQLH 619

Query: 591  GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLL 650
            G+IP  P   +YVDYS N FTSSIP  IG ++S +IFFS SKN++TG IP SICNAT L 
Sbjct: 620  GQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIFFSLSKNNITGSIPRSICNATYLQ 679

Query: 651  VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE 710
            VLD S N+LSG IP+CLI      LGVLNLRRNN +G +   FP NC L+TLDL+ N +E
Sbjct: 680  VLDFSDNHLSGKIPSCLIEY--GTLGVLNLRRNNFSGAIPGKFPVNCLLQTLDLSRNHIE 737

Query: 711  GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW 770
            G +P SLANC+ LE+L+LGNNQ + TFPC +KN + L VL+LR NNF G+I C + N +W
Sbjct: 738  GKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNITTLRVLVLRGNNFQGSIGCCKSNSTW 797

Query: 771  PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITV 830
             MLQI+DLA N FSG+LP        AMM  E   QS+LKHLQ+R L  SQ YYQDA+TV
Sbjct: 798  AMLQIVDLAFNNFSGKLPATCFSTWTAMMAGENEVQSKLKHLQFRVLQFSQLYYQDAVTV 857

Query: 831  TIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGN 890
            T KGLEM+L K+L ++TSID S NNF+G IPE MG   SL  LNLSHN  TG IPS IGN
Sbjct: 858  TSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSLYVLNLSHNGFTGHIPSSIGN 917

Query: 891  LREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGND 950
            LR++ESLDLS N LSG IP QLA+LNFLSVLNLS+N LVGRIP   Q+Q+F  TS+EGN 
Sbjct: 918  LRQLESLDLSQNRLSGEIPTQLANLNFLSVLNLSFNQLVGRIPPGNQMQTFSETSYEGNK 977

Query: 951  RLWGPPLNVCPTNSSKALPSA-PASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSRK 1005
             L G PL++  T+           S  EI W ++A  IGF  G G V+ PL+  R+
Sbjct: 978  ELCGWPLDLSCTDPPPEFDDRHSGSRMEIKWEYIAPEIGFVTGLGIVIWPLVLCRR 1033

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481300|ref|XP_002269481.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 1087 bits (2811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1016 (58%), Positives = 731/1016 (71%), Gaps = 20/1016 (1%)

Query: 4    VSGQCQSDQQSLL-------LQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRV 56
            VSG+C SD +  L       LQ+KS L F+++ S ++V W QS DCC+W GV  D  GRV
Sbjct: 6    VSGECLSDGRVCLEDEVLLLLQLKSSLIFNTAASNKLVSWIQSADCCSWGGVTWDATGRV 65

Query: 57   IGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAG 116
            + LDLS E IS  +++SSS+FSL+YLQSLNLA N F +++IP+    L NLT LNLSNAG
Sbjct: 66   VSLDLSSEFISGELNSSSSIFSLQYLQSLNLANNTF-SSQIPAEFHKLGNLTYLNLSNAG 124

Query: 117  FAGQIPIQVSGMTRLVTLDLSGMYFVRA--PLKLENPNLSGLLQNLAELRELYLDGVNIS 174
            F+GQIPI++S +T+LVT+DLS +YF+     LKLENPNL  L+QNL +LREL+LDGV IS
Sbjct: 125  FSGQIPIEISYLTKLVTIDLSSLYFITGIPKLKLENPNLRMLVQNLKKLRELHLDGVIIS 184

Query: 175  APGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLA 234
            A G EWC ALSS VP LQVLSL  C LSGP+  SL  L+SLS IRLD N++ +PVPEFL+
Sbjct: 185  AQGKEWCWALSSSVPNLQVLSLYSCHLSGPIHYSLKKLQSLSRIRLDDNNIAAPVPEFLS 244

Query: 235  DFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSA 294
            +FSNLT L LSSCGL+G FPEKI Q+PTL+TLDLSYN+LLQGSLP+F Q   LETL+LS 
Sbjct: 245  NFSNLTHLQLSSCGLYGTFPEKIFQVPTLQTLDLSYNKLLQGSLPEFPQGGCLETLVLSV 304

Query: 295  TNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHM 354
            T FSG LP+SI NLK L+R+E   C+F+GPIPT M++L+QLVYLD S N FSG IPS  +
Sbjct: 305  TKFSGKLPNSIANLKRLARIELADCDFSGPIPTVMANLTQLVYLDFSHNKFSGAIPSFSL 364

Query: 355  FRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLAD 414
             +NL  +DLS+N  TG ISS  W   +NL  +D  +N+L GS+P  LF LP +Q + L +
Sbjct: 365  SKNLTLIDLSHNNLTGQISSSHWVGFVNLVTIDFCYNSLYGSLPMPLFSLPSLQKIKLNN 424

Query: 415  NQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDA 474
            NQF G   E    SS  +DTLDLS NNLEGPIP+S F+L++L IL LSSNKF GT+EL  
Sbjct: 425  NQFSGPFGEFPATSSHPMDTLDLSGNNLEGPIPVSLFDLQHLNILDLSSNKFNGTVELSQ 484

Query: 475  IQRLRNLFRLDLSYNRLAVVAGSSVYCFP--PLLTTLSLASCKLSAIPNLRKQTKLYHLD 532
             Q+L NL  L LSYN L++    S    P  P+L+TL LASCKL  +P+L  Q+ L  LD
Sbjct: 485  FQKLGNLTTLSLSYNNLSINPSRSNPTSPLLPILSTLKLASCKLRTLPDLSSQSMLVILD 544

Query: 533  LSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTS-LSVLDLHSNQIQG 591
            LS NQI G+IPNW+WKIG    +HLNLSHNLL  L++P  +S+L   LS LDLHSNQ++G
Sbjct: 545  LSQNQIPGKIPNWIWKIGNGFLSHLNLSHNLLEGLQEP--LSNLPPFLSTLDLHSNQLRG 602

Query: 592  KIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLV 651
             I P PP++ YVDYS N FTSSIP DIG++M++++FFS SKN++TG+IP SICNA  L V
Sbjct: 603  PI-PTPPSSTYVDYSNNRFTSSIPDDIGTYMNVTVFFSLSKNNITGIIPASICNAHYLQV 661

Query: 652  LDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEG 711
            LD S N LSG IP+CLI   D  L VLNLRRN   GT+   FP +C L+TLDLNGN LEG
Sbjct: 662  LDFSDNSLSGKIPSCLIENGD--LAVLNLRRNKFKGTIPGEFPGHCLLQTLDLNGNLLEG 719

Query: 712  MVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP 771
             +P+SLANC  LE+L+LGNN+ +D FPCW+KN S L VL+LR+N F G I CP  N +WP
Sbjct: 720  KIPESLANCKALEVLNLGNNRMNDIFPCWLKNISSLRVLVLRANKFHGPIGCPNSNSTWP 779

Query: 772  MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVT 831
            MLQI+DLA N FSG LP+K   N  AMM  E   QS+  HL+++ L  SQ YYQDA+TVT
Sbjct: 780  MLQIVDLAWNNFSGVLPEKCFSNWRAMMAGEDDVQSKSNHLRFKVLAFSQLYYQDAVTVT 839

Query: 832  IKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNL 891
             KG EM+L K+L +FTSIDFS NNF+G IPE++G L+ L  LNLS N  TG IPS +G L
Sbjct: 840  SKGQEMELVKVLTLFTSIDFSCNNFQGDIPEDIGDLKLLYVLNLSGNGFTGQIPSSLGQL 899

Query: 892  REIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDR 951
            R++ESLDLS+N LSG IPAQL+SLNFLSVLNLS+N LVGRIPT  QLQ+F   SF GN  
Sbjct: 900  RQLESLDLSLNKLSGEIPAQLSSLNFLSVLNLSFNGLVGRIPTGNQLQTFSENSFAGNRG 959

Query: 952  LWGPPLNVCPTNSSKALPSAPASTDE--IDWFFMAMAIGFAVGFGSVVAPLMFSRK 1005
            L G PLNV   +++        S     I W ++A  IGF  G G V+ PL+  R+
Sbjct: 960  LCGFPLNVSCEDATPPTFDGRHSGSRIAIKWDYIAPEIGFVTGLGIVIWPLVLCRR 1015

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481293|ref|XP_003632602.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score = 1061 bits (2745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1019 (58%), Positives = 731/1019 (71%), Gaps = 18/1019 (1%)

Query: 1    MVLVSGQCQ-------SDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEA 53
            + LVSG+C         D++S+LLQ+K+ L F S+VS ++V W++S  CC+W GV  D  
Sbjct: 75   IALVSGECLGGSRLCLEDEKSMLLQLKNSLKFKSNVSMKLVTWNESVGCCSWEGVTWDSN 134

Query: 54   GRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLS 113
            G V+GLDLS E IS G ++SSSLFSL++LQ LNLA N FN+++IPSG   L NLT LNLS
Sbjct: 135  GHVVGLDLSSELISGGFNSSSSLFSLRHLQRLNLANNSFNSSQIPSGFDKLGNLTYLNLS 194

Query: 114  NAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAP-LKLENPNLSGLLQNLAELRELYLDGVN 172
              GF GQIPI++S +TRLVT+D S +YF   P LKLENPNL  L+QNLAELRELYL+GVN
Sbjct: 195  ATGFYGQIPIEISRLTRLVTIDFSILYFPGVPTLKLENPNLRMLVQNLAELRELYLNGVN 254

Query: 173  ISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEF 232
            ISA G EWC+ALSS VP LQVLSL  C+LSGP+D SL  LRSLS IRLD N+  +PVPEF
Sbjct: 255  ISAQGKEWCRALSSSVPNLQVLSLPSCYLSGPLDSSLQKLRSLSSIRLDSNNFSAPVPEF 314

Query: 233  LADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLIL 292
            LA+FSNLT L LSSCGL+G FPEKI Q+PTL+ LDLS N+LL GSLP+F QN SLETL+L
Sbjct: 315  LANFSNLTQLRLSSCGLYGTFPEKIFQVPTLQILDLSNNKLLLGSLPEFPQNGSLETLVL 374

Query: 293  SATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSL 352
              T FSG +P+SI NLK L+R+E   CNF+GPIP S ++L++LVYLD+S N FSGPIP  
Sbjct: 375  PDTKFSGKVPNSIGNLKRLTRIELARCNFSGPIPNSTANLARLVYLDLSENKFSGPIPPF 434

Query: 353  HMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLL 412
             + +NL  ++LS+N  TG I S   + L+NL  +DLS N+L GS+P  LF LP +Q + L
Sbjct: 435  SLSKNLTRINLSHNHLTGPIPSSHLDGLVNLVTLDLSKNSLNGSLPMPLFSLPSLQKIQL 494

Query: 413  ADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIEL 472
            ++NQF G +++ S    S+LDTLDLS NNLEG IP+S F+L+ L IL LSSNKF GT+ L
Sbjct: 495  SNNQFSGPLSKFS-VVPSVLDTLDLSSNNLEGQIPVSIFDLQCLSILDLSSNKFNGTVLL 553

Query: 473  DAIQRLRNLFRLDLSYNRLAV--VAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYH 530
             + Q+L NL  L LSYN L++    G+        LTTL LASCKL  +P+L  Q++L +
Sbjct: 554  SSFQKLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLKLASCKLRTLPDLSTQSRLTY 613

Query: 531  LDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
            LDLSDNQI G IPNW+ KIG  S  HLNLSHNLL  L++ +S +   SLS+LDLHSNQ+ 
Sbjct: 614  LDLSDNQIPGSIPNWIRKIGNGSLLHLNLSHNLLEDLQETFS-NFTPSLSILDLHSNQLH 672

Query: 591  GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLL 650
            G+IP  P   +YVDYS N FTSSIP  IG ++S +IFFS SKN++TG IP SICNAT L 
Sbjct: 673  GQIPTPPQFCSYVDYSDNRFTSSIPDGIGVYISFTIFFSLSKNNITGSIPRSICNATYLQ 732

Query: 651  VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE 710
            VLD S N LSG IP+CLI      LGVLNLRRNN +G +   FP NC L+TLDL+ N +E
Sbjct: 733  VLDFSNNNLSGKIPSCLIEYG--TLGVLNLRRNNFSGAIPGKFPVNCLLQTLDLSRNHIE 790

Query: 711  GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW 770
            G +P SLANC+ LE+L+LGNNQ + TFPC +KN + L VL+LR NNF G+I C + N +W
Sbjct: 791  GKIPGSLANCTALEVLNLGNNQMNGTFPCLLKNITTLRVLVLRGNNFQGSIGCRKSNSTW 850

Query: 771  PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITV 830
             MLQI+DLA N FSG+LP        AMM  E   QS+LKHLQ+R L  SQ YYQDA+TV
Sbjct: 851  AMLQIVDLAFNNFSGKLPATCFSTWTAMMAGENEVQSKLKHLQFRVLQFSQLYYQDAVTV 910

Query: 831  TIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGN 890
            T KGLEM+L K+L ++TSID S NNF+G IPE MG   SL  LNLSHN  TG IPS IGN
Sbjct: 911  TSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSLYVLNLSHNGFTGHIPSSIGN 970

Query: 891  LREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGND 950
            LR++ESLDLS N LSG IP QLA+LNFLSVLNLS+N LVGRIP   Q+Q+F  TS+EGN 
Sbjct: 971  LRQLESLDLSRNRLSGEIPTQLANLNFLSVLNLSFNQLVGRIPPGNQMQTFSETSYEGNK 1030

Query: 951  RLWGPPLNVC----PTNSSKALPSAPASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSRK 1005
             L G PL  C    PT   +         +E DW F+   +GF VG G +VAPL+F +K
Sbjct: 1031 ELCGWPLINCTDPPPTQDKRFQDKRFQDKEEFDWEFIITGLGFGVGAGIIVAPLIFWKK 1089

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481304|ref|XP_002270356.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera]

 Score = 1058 bits (2736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1021 (56%), Positives = 718/1021 (70%), Gaps = 20/1021 (1%)

Query: 1    MVLVSGQCQSDQQSLL-------LQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEA 53
            + LVSG+C SD +  L       LQ+KS L F++  S ++V W+QS DCC+W GV  D  
Sbjct: 3    VALVSGECLSDGRVCLEDEMLLLLQLKSTLKFNADASNKLVSWNQSADCCSWGGVTWDAT 62

Query: 54   GRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLS 113
            G V+ LDLS E IS G  +SSS+FSL+YLQSLNLA N F ++EIPSG   L NLT LNLS
Sbjct: 63   GHVVALDLSSEFISDGFYSSSSIFSLQYLQSLNLANNTFFSSEIPSGFDKLGNLTYLNLS 122

Query: 114  NAGFAGQIPIQVSGMTRLVTLDLSG---MYFVRAPLKLENPNLSGLLQNLAELRELYLDG 170
             AGF+GQIPI++S +TRLVT+D+S    ++   AP KLE PNL  L+QNL ELREL+LDG
Sbjct: 123  KAGFSGQIPIEISRLTRLVTIDISSFNDLFGTPAP-KLEQPNLRMLVQNLKELRELHLDG 181

Query: 171  VNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVP 230
            V+ISA G EWCQALSS VP L+VLSLS CFLSGP+D SL  LRSLSV+ L+ N+  +PVP
Sbjct: 182  VDISAQGKEWCQALSSSVPNLRVLSLSRCFLSGPIDSSLVKLRSLSVVHLNYNNFTAPVP 241

Query: 231  EFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETL 290
            +FLA+FSNLTSL LS C L+G FPE I Q+P L+ LDLS N+LL G+LP+F Q  SL TL
Sbjct: 242  DFLANFSNLTSLSLSFCRLYGTFPENIFQVPALQILDLSNNQLLWGALPEFPQGGSLRTL 301

Query: 291  ILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP 350
            +LS T FSG +PDSI  L+ LS +E   CNF+GPIP+S+++L++L+YLD+S N F+G IP
Sbjct: 302  VLSDTKFSGHMPDSIGKLEMLSWIELARCNFSGPIPSSIANLTRLLYLDLSSNGFTGSIP 361

Query: 351  SLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHL 410
            S    +NL +++LS N FTG I S  WE  LNL ++DL  N L G +P SLF  P +Q +
Sbjct: 362  SFRSSKNLTHINLSRNYFTGQIISHHWEGFLNLLNLDLHQNLLHGDLPLSLFSHPSLQKI 421

Query: 411  LLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTI 470
             L  NQF G + E S  SS +L+ LDLS NNL+G IPLS F+L+ L++L LS N   GT+
Sbjct: 422  QLNQNQFSGQLNEFSVVSSFVLEVLDLSSNNLQGSIPLSVFDLRALRVLELSFNNVSGTL 481

Query: 471  ELDAIQRLRNLFRLDLSYNRLAVVAGS--SVYCFPPLLTTLSLASCKLSAIPNLRKQTK- 527
            EL   Q L NL  L LS+N+L++   S  S +   P  TTL LASC L   P+LR  +K 
Sbjct: 482  ELSKFQELGNLTTLSLSHNKLSINVDSFNSSFSKSPHFTTLKLASCNLKRFPDLRNNSKF 541

Query: 528  LYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSN 587
            L +LDLS NQI GEIP+W+W IG     HLNLSHNLLV L++P+  +    L  LDLHSN
Sbjct: 542  LGYLDLSQNQIQGEIPHWIWMIGNSFLVHLNLSHNLLVDLQEPFP-NLPPYLFTLDLHSN 600

Query: 588  QIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNAT 647
             ++G+IP  P  ++YVDYS N+F SSIP DIGS++S  IFFS SKN+++G+IPESICNAT
Sbjct: 601  LLRGRIPTPPQFSSYVDYSNNSFISSIPEDIGSYISYVIFFSLSKNNISGIIPESICNAT 660

Query: 648  NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGN 707
            N+ VLDLS N LSG IP+CLI   +  L VLNLRRN  +GT+S  FP NC L TLDLNGN
Sbjct: 661  NVQVLDLSDNALSGEIPSCLI--ENEALAVLNLRRNMFSGTISGNFPGNCILHTLDLNGN 718

Query: 708  QLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYN 767
             LEG +P+S+ANC  LE+L+LGNN+ DD FPCW+KN S L VL+LR+N F G I CP  N
Sbjct: 719  LLEGTIPESVANCKELEVLNLGNNRIDDKFPCWLKNMSSLRVLVLRANRFHGPIGCPNSN 778

Query: 768  VSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDA 827
             +WPMLQI+DLA N FSG+LP K  L  +AMM  E   QS+L H+Q++ L  S+ YYQDA
Sbjct: 779  STWPMLQIVDLAYNNFSGKLPAKGFLTWKAMMASEDEVQSKLNHIQFKILEFSELYYQDA 838

Query: 828  ITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887
            +TVT KG EM+L K+L +FTSIDFS N FEG IPEEMG   SL  LNLS N  TG IPS 
Sbjct: 839  VTVTSKGQEMELVKVLTLFTSIDFSSNKFEGQIPEEMGNFISLYVLNLSGNGFTGQIPSS 898

Query: 888  IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFE 947
            +G LR++ESLDLS N+LSG IP +L SL FLSVL+LS+N LVG IP+  Q Q+F   SF+
Sbjct: 899  MGQLRQLESLDLSRNHLSGKIPTELVSLTFLSVLDLSFNQLVGAIPSGNQFQTFSEASFQ 958

Query: 948  GNDRLWGPPLNV-CPTNSSKAL--PSAPASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSR 1004
             N  L G PLNV C  ++          AS  EI W ++A  IGF  G G V+ PL+F R
Sbjct: 959  VNKGLCGQPLNVNCEEDTPPPTFDDRHSASRMEIKWEYIAPEIGFVTGLGIVIWPLVFCR 1018

Query: 1005 K 1005
            +
Sbjct: 1019 R 1019

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806063|emb|CAN76702.1| hypothetical protein VITISV_032508 [Vitis vinifera]

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 583/1002 (58%), Positives = 706/1002 (70%), Gaps = 18/1002 (1%)

Query: 14   SLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNS 73
            SLLLQ+KS L  + + S ++V W+ S DCC+W GV  D +G V+ LDLS E IS G ++S
Sbjct: 2    SLLLQLKSTLKHNVAASSKLVSWNPSGDCCSWGGVTWDSSGHVVELDLSSELISGGFNSS 61

Query: 74   SSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVT 133
            SSLFSL++LQ LNLA N FNA++IPSG G L NL  LNLS+AGF+GQIPI++S +TRLVT
Sbjct: 62   SSLFSLQHLQRLNLANNSFNASQIPSGFGKLGNLIYLNLSSAGFSGQIPIEISRLTRLVT 121

Query: 134  LDLSGMYFVRAP-LKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQ 192
            +D S +YF+  P LKLENPNL  LLQNL ELREL+L+GVNISA G EWCQ LSS VP LQ
Sbjct: 122  IDFSILYFLGLPTLKLENPNLRKLLQNLRELRELHLNGVNISAEGKEWCQXLSSSVPNLQ 181

Query: 193  VLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGA 252
            VLS+  C+LSGP+D SL  LRSLS IRLD N   +PVPEFLA+F NLT L LSSCGLHG 
Sbjct: 182  VLSMPNCYLSGPLDSSLQKLRSLSSIRLDNNXFSAPVPEFLANFLNLTLLRLSSCGLHGT 241

Query: 253  FPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLS 312
            FPEKI Q+PTL+ LDLS B+LLQGSLP F QN SL TL+LS T FSG +P SI NLK L+
Sbjct: 242  FPEKIFQVPTLQXLDLSNBKLLQGSLPKFPQNGSLGTLVLSDTKFSGKVPYSIGNLKXLT 301

Query: 313  RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGI 372
            R+E   C+F+GPIP SM+DL+QLVYLD+S N FSG IP   + +NL  ++LS+N  TG I
Sbjct: 302  RIELAGCDFSGPIPNSMADLTQLVYLDLSNNKFSGSIPPFSLSKNLTRINLSHNYLTGPI 361

Query: 373  SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLL 432
            SS  W+ L+NL  +DL  N+L GS+P  LF LP +Q + L++N+F G +++ S    S+L
Sbjct: 362  SSSHWDGLVNLVTLDLRDNSLNGSLPMLLFSLPSLQKIQLSNNKFSGPLSKFSVVPFSVL 421

Query: 433  DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
            +TLD S NNLEGPIP+S F+L  L IL LSSNKF GT+EL + Q+L NL  L LSYN L+
Sbjct: 422  ETLDSSSNNLEGPIPVSVFDLHCLNILDLSSNKFNGTVELSSFQKLGNLSTLSLSYNFLS 481

Query: 493  VVAGSSVYCFPPL--LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIG 550
              A       P L  LTTL LASCKL  +P+L  Q++L HLDLSDNQI G IPNW+WKIG
Sbjct: 482  TNASVGNPTSPLLSNLTTLKLASCKLXTLPDLSTQSRLTHLDLSDNQIRGSIPNWIWKIG 541

Query: 551  KDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNF 610
              S  HLNLSHNLL  L++ +S +    LS+LDLHSNQ+ G+IP  P  + YVDYS N+F
Sbjct: 542  NGSLMHLNLSHNLLEDLQETFS-NFTPYLSILDLHSNQLHGQIPTPPQFSKYVDYSNNSF 600

Query: 611  TSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINM 670
             SSIP DIG++MS +IFFS  KN++TG IP SICNAT L VLD S N  SG IP+CLI  
Sbjct: 601  NSSIPDDIGTYMSFTIFFSLXKNNITGSIPRSICNATYLQVLDFSDNAFSGEIPSCLI-- 658

Query: 671  SDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGN 730
             +  L VLNL RN   GT+       C LRTLDL+ N L+G +P+SL NC  LEIL+LGN
Sbjct: 659  QNEALAVLNLGRNKFVGTIXGELXHKCLLRTLDLSENLLQGNIPESLVNCKELEILNLGN 718

Query: 731  NQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQK 790
            NQ DD FPCW+KN S L VL+LR+N F G I CP+ N +W  LQI DLA N FSG+LP K
Sbjct: 719  NQIDDIFPCWLKNISSLRVLVLRANKFHGTIGCPKSNSTWATLQIFDLAFNNFSGKLPAK 778

Query: 791  WLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSID 850
             L    A+M  E   QS+LK LQ+R     Q YYQD + V  KG EM+L KIL +FTSID
Sbjct: 779  CLSTWTAIMAGENEVQSKLKILQFRVPQFGQLYYQDTVRVISKGQEMELVKILTLFTSID 838

Query: 851  FSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPA 910
            +S NNFEG IPE +G L SL  LNLSHN  TG IPS IG LR++ESLDLS N LSG IP 
Sbjct: 839  WSYNNFEGEIPEVIGNLTSLYVLNLSHNGFTGQIPSSIGKLRQLESLDLSQNRLSGEIPT 898

Query: 911  QLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNSSKALPS 970
            QLA+LNFLSVLNLS+N LVGRIP   QLQ+F   SF GN  L G P+NV   ++     +
Sbjct: 899  QLANLNFLSVLNLSFNQLVGRIPPGNQLQTFSPNSFVGNRGLCGFPVNVSCEDA-----T 953

Query: 971  APASTD-------EIDWFFMAMAIGFAVGFGSVVAPLMFSRK 1005
             P S D       EI W  +A  IGF  G G V+ PL+  R+
Sbjct: 954  PPTSDDGHSGSGMEIKWECIAPEIGFVTGLGIVIWPLVLCRR 995

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481296|ref|XP_003632603.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score = 1056 bits (2730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 587/1021 (57%), Positives = 720/1021 (70%), Gaps = 19/1021 (1%)

Query: 1    MVLVSGQCQSD-------QQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEA 53
            + LVSG+C SD       Q SLLLQ+K+ L F+ + S ++V W+ S DCC+W GV  D  
Sbjct: 23   VALVSGECLSDGSICLEDQMSLLLQLKNTLKFNVAASSKLVSWNPSTDCCSWGGVTWDAT 82

Query: 54   GRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLS 113
            G V+ LDLS +SI  G +NSSS+FSL+YLQSLNLA N F +++IPSG   L +L  LNLS
Sbjct: 83   GHVVALDLSSQSIYGGFNNSSSIFSLQYLQSLNLANNTFYSSQIPSGFSKLDHLIYLNLS 142

Query: 114  NAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAP-LKLENPNLSGLLQNLAELRELYLDGVN 172
            NAGF+GQIPI++S +T+LVT+D S  Y    P L LENPNL  L+QNL ELRELYL+GVN
Sbjct: 143  NAGFSGQIPIEISCLTKLVTIDFSVFYLPGVPTLTLENPNLRMLVQNLTELRELYLNGVN 202

Query: 173  ISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEF 232
            ISA G EWCQALSS VP LQVLSL+ C+L GP+D SL  LRSLS IRLD N+  +PV EF
Sbjct: 203  ISAQGKEWCQALSSSVPNLQVLSLASCYLYGPLDSSLQKLRSLSSIRLDSNNFSAPVLEF 262

Query: 233  LADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLIL 292
            LA+FSNLT L LSSCGL+G FPEKI Q+PTL+ LDLS N+LL GSLP+F QN SL TL+L
Sbjct: 263  LANFSNLTQLRLSSCGLYGTFPEKIFQVPTLQILDLSNNKLLLGSLPEFPQNGSLGTLVL 322

Query: 293  SATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSL 352
            S T FSG +P SI NLK L+R+E   C+F+G IP SM+DL+QLVYLD S+N FSGPIP  
Sbjct: 323  SDTKFSGKVPYSIGNLKRLTRIELAGCDFSGAIPNSMADLTQLVYLDSSYNKFSGPIPPF 382

Query: 353  HMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLL 412
             + +NL  ++LS+N  TG I S   + L+NL  +DL  N+L GS+P  LF LP +Q + L
Sbjct: 383  SLSKNLTRINLSHNYLTGPIPSSHLDGLVNLVTLDLRDNSLNGSLPMLLFSLPSLQKIQL 442

Query: 413  ADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIEL 472
            ++NQF G +++ S    S+L+TLDLS NNLEGPIP+S F+L+ L IL LSSNKF GT+ L
Sbjct: 443  SNNQFSGPLSKFSVVPFSVLETLDLSSNNLEGPIPISVFDLQCLNILDLSSNKFNGTVLL 502

Query: 473  DAIQRLRNLFRLDLSYNRLAV--VAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYH 530
             + Q L NL  L LSYN L++    G+        LTTL LASCKL  +P+L  Q++L H
Sbjct: 503  SSFQNLGNLTTLSLSYNNLSINSSVGNPTLPLLLNLTTLKLASCKLRTLPDLSTQSRLTH 562

Query: 531  LDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
            LDLSDNQI G IPNW+WK G  S  HLNLSHNLL  L++ +S +    LS+LDLHSNQ+ 
Sbjct: 563  LDLSDNQIPGSIPNWIWKNGNGSLLHLNLSHNLLEDLQETFS-NFTPYLSILDLHSNQLH 621

Query: 591  GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLL 650
            G+IP  P  + YVDYS N+F SSIP DIG ++S ++FFS SKN++TGVIPESICNA+ L 
Sbjct: 622  GQIPTPPQFSIYVDYSDNSFNSSIPDDIGIYISFTLFFSLSKNNITGVIPESICNASYLQ 681

Query: 651  VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE 710
            VLD S N  SG IP+CLI   +  L VLNL RN  NGT+   F   C L+TLDLN N LE
Sbjct: 682  VLDFSDNAFSGKIPSCLI--QNEALAVLNLGRNKFNGTIPGEFRHKCLLQTLDLNENLLE 739

Query: 711  GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW 770
            G + +SLANC  LEIL+LGNNQ DD FPCW+KN + L VL+LR N F G I C R N +W
Sbjct: 740  GNITESLANCKELEILNLGNNQIDDIFPCWLKNITNLRVLVLRGNKFHGPIGCLRSNSTW 799

Query: 771  PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITV 830
             MLQI+DLA N FSG+LP+K      AMM  E   QS+LKHLQ+R L  SQ YYQDA+TV
Sbjct: 800  AMLQIVDLADNNFSGKLPEKCFSTWTAMMAGENEVQSKLKHLQFRVLQFSQLYYQDAVTV 859

Query: 831  TIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGN 890
            T KGLEM+L K+L ++TSID S NNF+G IPE MG   SL  LNLSHN  TG IPS IGN
Sbjct: 860  TSKGLEMELVKVLTLYTSIDLSCNNFQGDIPEVMGNFTSLYGLNLSHNGFTGHIPSSIGN 919

Query: 891  LREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGND 950
            LR++ESLDLS N LSG IP QLA+LNFLSVLNLS+N LVGRIP   Q+Q+F   S+EGN 
Sbjct: 920  LRQLESLDLSQNRLSGEIPTQLANLNFLSVLNLSFNQLVGRIPPGNQMQTFSEASYEGNK 979

Query: 951  RLWGPPLNVCPTNSSKALPSAP------ASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSR 1004
             L G PL++  T+   +            S  EI W ++A  IGF  G G V+ PL+  R
Sbjct: 980  ELCGWPLDLSCTDPPPSQGKEEFDDRHSGSRMEIKWEYIAPEIGFVTGLGIVIWPLVLCR 1039

Query: 1005 K 1005
            +
Sbjct: 1040 R 1040

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139184|ref|XP_002323001.1| predicted protein [Populus trichocarpa] gi|222867631|gb|EEF04762.1| predicted protein [Populus trichocarpa]

 Score = 1053 bits (2722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/1011 (56%), Positives = 717/1011 (70%), Gaps = 16/1011 (1%)

Query: 1    MVLVSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDE-AGRVIGL 59
            + LVSGQC+ DQQSLLLQ+K+ L FD SVS ++V+W+ + DCC W G+ CDE +GRVI L
Sbjct: 18   VCLVSGQCRKDQQSLLLQLKNTLVFDQSVSAKLVKWNSTPDCCDWPGITCDEGSGRVISL 77

Query: 60   DLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAG 119
            DLS E I+ G+ +SS L+ L++LQSLNL+FN F +T +P G  NLT+L +LNLSNAGF G
Sbjct: 78   DLSSERITGGLGDSSGLYRLQFLQSLNLSFNSF-STALPVGFANLTDLISLNLSNAGFTG 136

Query: 120  QIPIQVSGMTRLVTLDLSGMYFVRAP-LKLENPNLSGLLQNLAELRELYLDGVNISAPGI 178
            QIP   S +T+LV+LDLS + F  +P LKLE PN + L+QNL  L EL LDGVNISA G 
Sbjct: 137  QIPNDFSKLTKLVSLDLSALSFPGSPALKLEQPNFATLVQNLTHLTELLLDGVNISAHGN 196

Query: 179  EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSN 238
            +WC+ALSS +P L+VLS+S C+LSGP+D SL+ L+SLS+IRL  N+L +PVPEFLA++S 
Sbjct: 197  DWCKALSSSLPNLKVLSMSNCYLSGPLDASLAKLQSLSIIRLSGNNLSTPVPEFLANYSK 256

Query: 239  LTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFS 298
            LT+L LSSC L+G FP+ I Q+PTLE LDL YN+ LQGS P+FHQNLSL TL+LS TNFS
Sbjct: 257  LTALQLSSCQLNGIFPQAIFQVPTLEILDLQYNKFLQGSFPEFHQNLSLRTLLLSNTNFS 316

Query: 299  GILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNL 358
            G LP SI  L+ LSR+E    NF GPIP SM++L+QL YLD+  N F+G +PS    +NL
Sbjct: 317  GTLPQSIGELQKLSRIELAGNNFTGPIPNSMANLTQLFYLDLLSNKFTGTLPSFRKSKNL 376

Query: 359  AYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFD 418
             Y+D+S+N   G I S  WE L +L +VDL +N   GSIP SLF +P +Q + L++N+F 
Sbjct: 377  TYVDVSHNQLKGEIPSGHWEGLRSLTYVDLGYNAFNGSIPSSLFAIPSLQKIQLSNNRFG 436

Query: 419  GHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRL 478
            G + E  N SSSLLDTLDLS N LEGPIP S F L  L +L LSSN    T++L  IQ+L
Sbjct: 437  GQIPEFPNVSSSLLDTLDLSSNKLEGPIPSSVFGLAKLNVLELSSNMLNDTLQLHWIQKL 496

Query: 479  RNLFRLDLSYNRLAVVAGSSVYCFP--PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDN 536
             NL  L LSYN L V +          P +  L LASC L   P+LR Q+KL+HLDLSDN
Sbjct: 497  PNLTTLGLSYNNLTVKSSGGNSNMSSLPQIKKLRLASCDLGMFPDLRNQSKLFHLDLSDN 556

Query: 537  QISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPL 596
            QI+G +P W+ ++      +LNLS NLLV LE+P S   L  LS+LDLH NQ+QG IP  
Sbjct: 557  QITGPVPGWISEL--ILLQYLNLSRNLLVDLERPLS---LPGLSILDLHHNQLQGSIPVP 611

Query: 597  PPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSY 656
            P    YVDYS N F+S IP +IG++ + ++FFS S N LTG IP+SICN   L VLDLS 
Sbjct: 612  PSYITYVDYSSNKFSSFIPPNIGNYFNFTLFFSLSNNHLTGEIPQSICNTEWLQVLDLSN 671

Query: 657  NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKS 716
            N LSG IP+CLI+   + L VLNLRRNN +G +   FP +C L+TLDL+GN L+G VPKS
Sbjct: 672  NSLSGAIPSCLIDKIKT-LRVLNLRRNNFDGIIPDKFPRSCELKTLDLSGNNLQGQVPKS 730

Query: 717  LANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQII 776
            LANC++LE+LDLGNNQ +D+FPC +K+ S   VL+LR+N F G+I CP+   +WP LQI+
Sbjct: 731  LANCTMLEVLDLGNNQINDSFPCLLKSISSFRVLVLRNNMFSGHIGCPQIEGTWPRLQIV 790

Query: 777  DLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQA-YYQDAITVTIKGL 835
            DLA N F G L    L   E MM    RS   L H++Y  L L+   YYQD+ITVT+KGL
Sbjct: 791  DLAFNHFIGNLSDICLKTWEGMMEGGNRS---LDHIRYDPLQLTNGLYYQDSITVTVKGL 847

Query: 836  EMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIE 895
            E++L KIL +FTS DFS NNFEGPIP+ +G   +L  LNLSHN LTG IPS +GNL ++E
Sbjct: 848  ELELVKILTVFTSADFSSNNFEGPIPDAIGKFNALYVLNLSHNVLTGQIPSSLGNLSQLE 907

Query: 896  SLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGP 955
            SLDLS N LSG IPAQL SL FLSVLNLSYN LVGRIPT  Q  +F + SFEGN  L GP
Sbjct: 908  SLDLSSNQLSGQIPAQLTSLTFLSVLNLSYNRLVGRIPTGNQFLTFSSDSFEGNQGLCGP 967

Query: 956  PLNVCPTNSSKALPSAPAST-DEIDWFFMAMAIGFAVGFGSVVAPLMFSRK 1005
            PL +  +N++++  +  ++   E DW F+   +GF +G G VVAPL+FS+K
Sbjct: 968  PLKLACSNTNESNSTRGSNQRKEFDWQFIVPGLGFGLGSGIVVAPLLFSKK 1018

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|214011438|gb|ACJ61469.1| GbVe [Gossypium barbadense]

 Score = 1030 bits (2663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/1008 (56%), Positives = 703/1008 (69%), Gaps = 15/1008 (1%)

Query: 1    MVLVSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLD 60
            +VLVSGQCQ DQ  LLL++KS  +F+S+   ++ +W+Q+ DCC W GV CD +GRVIGLD
Sbjct: 24   LVLVSGQCQRDQGQLLLELKS--SFNSTSLGKLQKWNQTTDCCFWDGVTCDASGRVIGLD 81

Query: 61   LSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQ 120
            LS +SIS  ID+SS LF  ++LQ LNLA+N   AT  P+G   L NL+ LNLSNAGF GQ
Sbjct: 82   LSNQSISGAIDDSSGLFRFQHLQQLNLAYNRLMAT-FPTGFDKLENLSYLNLSNAGFTGQ 140

Query: 121  IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEW 180
            IP  +S MTRLVTLDLS    +   L LE P L  L+QNL +L+ L+LDGVNI A G EW
Sbjct: 141  IPAVISRMTRLVTLDLSVSSLLGRSLTLEKPKLEMLVQNLTKLKFLHLDGVNIRATGNEW 200

Query: 181  CQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLT 240
            C+ALSSL   LQVLS+S C LSGP+D S+S LRSLSVIRLD N+L + VPEF A+F NLT
Sbjct: 201  CRALSSLT-DLQVLSMSNCNLSGPIDSSISKLRSLSVIRLDNNNLSTSVPEFFAEFPNLT 259

Query: 241  SLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGI 300
            SL+LS+ GL G  P ++L++PTL+ LDLS NELL+GS  +F  N SL+TL LS T F G 
Sbjct: 260  SLHLSTSGLRGGLPAEVLKIPTLQILDLSNNELLEGSFQEFPSNGSLQTLTLSGTKFGGQ 319

Query: 301  LPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAY 360
            +PDSI NL  L+R+E   CNF+GPIP ++  L+QLVYLD S N FSGPIPS    RNL  
Sbjct: 320  VPDSIGNLGQLTRIELASCNFSGPIPKAVKKLTQLVYLDFSSNSFSGPIPSFSSSRNLTQ 379

Query: 361  LDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGH 420
            L+L+YN   G I S  W  L NL  +DL +N L G+IP +LF +P +Q + L+ N+F+G 
Sbjct: 380  LNLAYNRLNGTIHSTDWSVLSNLVSIDLRNNKLSGTIPPTLFGIPSLQKISLSQNRFNGS 439

Query: 421  VTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRN 480
            + ++   ++ LLDTLDLS N L+G  P+  FEL+ LKIL +SSNKF G I+   IQ+LRN
Sbjct: 440  LGDLRGKTTLLLDTLDLSSNMLQGQFPMFVFELQGLKILTISSNKFSGFIQWTDIQKLRN 499

Query: 481  LFRLDLSYNRLAVVAGS--SVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQ 537
            L  LDLSYN L++ A S  S     P +TTL LASC L   P  L+ Q KL HLDLS NQ
Sbjct: 500  LSNLDLSYNNLSIDATSTNSALSTFPNITTLKLASCNLKKFPGFLKTQVKLNHLDLSKNQ 559

Query: 538  ISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP 597
            +SGEIPNW+W+I   +  +LNLS N L+  E P+ +S  ++L+V+DLH NQ+QG+I  LP
Sbjct: 560  MSGEIPNWVWEI--KNLAYLNLSQNSLMKFEGPF-LSITSTLTVVDLHGNQLQGQIDRLP 616

Query: 598  PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN 657
              A Y+DYS NNF+S +P DIG F+  + FFS S N+  G IPESIC ++ L VLDLS N
Sbjct: 617  QYATYLDYSRNNFSSVLPRDIGDFLQFAYFFSISDNNFHGSIPESICKSSYLQVLDLSNN 676

Query: 658  YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSL 717
             LSG IP CLI MS S LGVLNLRRNNL G +S TFP NC L+TL LN N L G VPKSL
Sbjct: 677  SLSGSIPECLIQMSVS-LGVLNLRRNNLTGNISDTFPENCLLQTLVLNRNLLRGKVPKSL 735

Query: 718  ANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIID 777
             +C +LE+LDLGNNQ +DTFPC +KN S L VL+LR N F GN+ C   +  WPMLQI+D
Sbjct: 736  VSCKMLEVLDLGNNQINDTFPCHLKNISSLRVLVLRGNKFNGNVHCSERS-PWPMLQIVD 794

Query: 778  LASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEM 837
            L+SN FSGRL +  L   +AM   E  + SEL HLQ++ L L+Q YYQDAITVT+KGLE+
Sbjct: 795  LSSNSFSGRLHEACLSTWKAMRAAESETLSELNHLQFKVLKLNQFYYQDAITVTMKGLEL 854

Query: 838  KLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESL 897
            +L KIL +FTSID SRNNFEGPIPE +G  ++L  LN SHNA TGSIP  +GNL ++ESL
Sbjct: 855  ELLKILTVFTSIDISRNNFEGPIPEVIGTFKALYVLNFSHNAFTGSIPPSLGNLSQLESL 914

Query: 898  DLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPL 957
            DLS N+  G IP QLA+LNF+S LN+S N L G+IP STQ+QSF   SFE N  L G PL
Sbjct: 915  DLSSNSFDGEIPIQLANLNFISFLNVSNNKLEGQIPRSTQIQSFSEASFENNKGLCGLPL 974

Query: 958  NVCPTNSSKALPSAPAS---TDEIDWFFMAMAIGFAVGFGSVVAPLMF 1002
                 N +   P         DE DW F+ + +GF VG    VAPL+F
Sbjct: 975  TTDCVNGTSPKPRTTQEFQPADEFDWQFIFIGVGFGVGAALFVAPLIF 1022

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|237899607|gb|ACR33108.1| verticillium wilt disease resistance protein [Solanum lycopersicum] gi|237899611|gb|ACR33110.1| verticillium wilt disease resistance protein [Solanum lycopersicum] gi|237899613|gb|ACR33111.1| verticillium wilt disease resistance protein [Solanum lycopersicum]

 Score = 1017 bits (2629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1011 (54%), Positives = 716/1011 (70%), Gaps = 11/1011 (1%)

Query: 1    MVLVSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQ-SNDCCTWSGVDCDEAGRVIGL 59
            ++LVS QC  DQ+SLLLQ+K    +DS++S ++ +W+  +++CC W+GV CD +G VI L
Sbjct: 24   ILLVSSQCLDDQKSLLLQLKGSFQYDSTLSNKLARWNHNTSECCNWNGVTCDLSGHVIAL 83

Query: 60   DLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAG 119
            +L +E IS+GI+N+S+LFSL+YL+ LNLA+N FN   IP G+GNLTNLT LNLSNAGF G
Sbjct: 84   ELDDEKISSGIENASALFSLQYLERLNLAYNKFNVG-IPVGIGNLTNLTYLNLSNAGFVG 142

Query: 120  QIPIQVSGMTRLVTLDLSGMY--FVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
            QIP+ +S +TRLVTLDLS ++  F + PLKLENPNLS  ++N  ELRELYLDGV++SA  
Sbjct: 143  QIPMMLSRLTRLVTLDLSTLFPDFAQ-PLKLENPNLSHFIENSTELRELYLDGVDLSAQR 201

Query: 178  IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFS 237
             EWCQ+LSS +P L VLSL  C +SGP+D SLS L  LS IRLD N+L + VPE+ A+FS
Sbjct: 202  TEWCQSLSSYLPNLTVLSLRTCRISGPIDESLSKLHFLSFIRLDQNNLSTTVPEYFANFS 261

Query: 238  NLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNF 297
            NLT+L LSSC L G FP++I Q+P LE LDLS N+LL GS+P F Q  SL T+ LS T F
Sbjct: 262  NLTTLTLSSCNLQGTFPKRIFQVPVLEFLDLSTNKLLSGSIPIFPQIGSLRTISLSYTKF 321

Query: 298  SGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRN 357
            SG LPD+I NL+NLSR+E   CNF+ PIP++M++L+ LVYLD SFN+F+G +P     + 
Sbjct: 322  SGSLPDTISNLQNLSRLELSNCNFSEPIPSTMANLTNLVYLDFSFNNFTGSLPYFQGAKK 381

Query: 358  LAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQF 417
            L YLDLS N  TG +S   +E L  L +++L +N+L GS+P  +FELP ++ L L  NQF
Sbjct: 382  LIYLDLSRNGLTGLLSRAHFEGLSELVYINLGNNSLNGSLPAYIFELPSLKQLFLYSNQF 441

Query: 418  DGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQR 477
             G V E  NASSS LDT+DL +N+L G IP S FE+  LK+L LSSN F GT+ LD I R
Sbjct: 442  VGQVDEFRNASSSPLDTVDLRNNHLNGSIPKSMFEVGRLKVLSLSSNFFRGTVPLDLIGR 501

Query: 478  LRNLFRLDLSYNRLAVVA--GSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSD 535
            L NL RL+LSYN L V A   +S     P L  L LASC+L   P+L+ Q+++ HLDLSD
Sbjct: 502  LSNLSRLELSYNNLTVDASSSNSTSFTFPQLNILKLASCRLQKFPDLKNQSRMMHLDLSD 561

Query: 536  NQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP 595
            NQI G IPNW+W IG     HLNLS N L  +EQPY++S  ++L+VLDLHSN+++G +  
Sbjct: 562  NQILGAIPNWIWGIGGGGLAHLNLSFNQLEYVEQPYTVS--SNLAVLDLHSNRLKGDLLI 619

Query: 596  LPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLS 655
             P  A YVDYS NN  +SIP DIG  +  + FFS + NS+TG+IPESICN + L VLD S
Sbjct: 620  PPSTAIYVDYSSNNLNNSIPTDIGRSLGFASFFSVANNSITGIIPESICNVSYLQVLDFS 679

Query: 656  YNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPK 715
             N LSG IP CL+  S  +LGVLNL  N L+G +  +FP  C+L TLDL+ N  EG +PK
Sbjct: 680  NNALSGTIPPCLLEYS-PKLGVLNLGNNRLHGVIPDSFPIGCALITLDLSRNIFEGKLPK 738

Query: 716  SLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQI 775
            SL NC++LE+L++GNN   D FPC ++N++ L VL+LRSN F GN++C     SW  LQI
Sbjct: 739  SLVNCTLLEVLNVGNNSLVDRFPCMLRNSTSLKVLVLRSNKFNGNLTCNITKHSWKNLQI 798

Query: 776  IDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGL 835
            ID+ASN F+G L  +   N   MMV +   ++   H+QY FL LS  YYQD +T+ IKG+
Sbjct: 799  IDIASNNFTGMLNAECFTNWRGMMVAKDYVETGRNHIQYEFLQLSNLYYQDTVTLIIKGM 858

Query: 836  EMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIE 895
            E++L KIL +FTSIDFS N F+G IP+ +G L SL  LNLSHNAL G IP  IG L+ +E
Sbjct: 859  ELELVKILRVFTSIDFSSNRFQGKIPDTVGDLSSLYVLNLSHNALEGPIPKSIGKLQMLE 918

Query: 896  SLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGP 955
            SLDLS N+LSG IP++L+SL FL+VLNLS+N+L G+IP S Q ++F A SFEGN  L G 
Sbjct: 919  SLDLSTNHLSGEIPSELSSLTFLAVLNLSFNNLFGKIPQSNQFETFPAESFEGNRGLCGL 978

Query: 956  PLNV-CPTNSSKALPSAPASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSRK 1005
            PLNV C +++S+  P+  +  D  DW F+   +G+ VG    +APL+F ++
Sbjct: 979  PLNVICKSDTSELKPAPSSQDDSYDWQFIFTGVGYGVGAAISIAPLLFYKQ 1029

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579302|ref|XP_002530496.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223529953|gb|EEF31880.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1014 (54%), Positives = 714/1014 (70%), Gaps = 16/1014 (1%)

Query: 1    MVLVSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAG--RVIG 58
            +V+VSG C+ DQQSLL++  S L F+ + S ++V W+ S+DCC W+GV CD  G  RVIG
Sbjct: 20   VVMVSGSCRIDQQSLLVRFHSSLRFNQAKSIKLVSWNLSSDCCDWAGVTCDGGGLGRVIG 79

Query: 59   LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
            L+LS ESIS GI+N S+LF L+YL++L+L++N FN T IP+   +LT L +LNLSNAG+A
Sbjct: 80   LNLSSESISGGIENPSALFRLRYLRNLDLSYNNFN-TSIPASFASLTCLISLNLSNAGYA 138

Query: 119  GQIPIQVSGMTRLVTLDLS--GMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAP 176
            GQIPI++S +T+LVTLDLS    +  ++ L+LENPNL+ L+QNL  L EL+LDGVNISA 
Sbjct: 139  GQIPIEISYLTKLVTLDLSISPFFSAKSALRLENPNLAKLVQNLTHLTELHLDGVNISAS 198

Query: 177  GIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF 236
            G EWC  LSS +P L+VLSLS CFLSGP D SL+ L+SLSVIRLD N   SPVPEF A F
Sbjct: 199  GKEWCGPLSSSLPSLRVLSLSRCFLSGPFDSSLAALQSLSVIRLDGNSFSSPVPEFFASF 258

Query: 237  SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
             NL +L LSSC L G FP K+  + TLE +DLS+N+ LQG LPD  QN SL+TL L+   
Sbjct: 259  LNLRTLSLSSCKLQGTFPTKVFHVSTLEIIDLSFNKELQGYLPDSFQNASLKTLKLNNIK 318

Query: 297  FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
            FSG LPD I  L NL+R+    C F GPIPTSM +L++LVYLD S N F+G IPSL   +
Sbjct: 319  FSGSLPDPIGALGNLTRINLATCTFTGPIPTSMENLTELVYLDFSSNTFTGSIPSLDGSK 378

Query: 357  NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416
             L Y+D S N  +G IS+I W+ L NL H+DL +N+  GSIP SLF +  +Q ++L+ NQ
Sbjct: 379  KLMYVDFSNNYLSGVISNIDWKGLSNLVHIDLKNNSFNGSIPLSLFAIQSLQKIMLSYNQ 438

Query: 417  FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQ 476
            F G + E  NAS+  LDTLDLS+NNLEGP+P S FEL+ L +L L+SNKF GTI+LD IQ
Sbjct: 439  FGGQIPEFPNASTLSLDTLDLSNNNLEGPVPHSVFELRRLNVLSLASNKFSGTIKLDQIQ 498

Query: 477  RLRNLFRLDLSYNRLAVV--AGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLS 534
            +L NL  +DLSYN+L V   A +S   FP  LTTL LASC L   P+LR Q+++ +LDL+
Sbjct: 499  KLVNLTTVDLSYNKLTVDVNATNSTSSFPLRLTTLKLASCNLRMFPDLRNQSRITNLDLA 558

Query: 535  DNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIP 594
            DN+I+G +P W+ ++G  S  +LNLS NLLVSL +P S+S+  +L+VLDLHSNQ+QG IP
Sbjct: 559  DNKIAGSVPPWIGQVGNGSLLNLNLSRNLLVSLPEPLSLSN--TLAVLDLHSNQLQGNIP 616

Query: 595  PLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDL 654
              PP  + VD S NNF+SSIP +IG  +S++IFFS S N + GVIPES+C A+ L VLDL
Sbjct: 617  SPPPLVSVVDLSNNNFSSSIPYNIGDNLSVAIFFSLSNNRVEGVIPESLCTASYLEVLDL 676

Query: 655  SYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVP 714
            S N L G IP+CLI  S++ LGVLNLR+NN  G +   F   C L TLDL+GN LEG VP
Sbjct: 677  SNNSLIGSIPSCLIERSET-LGVLNLRKNNFTGRIPDNFSRKCKLETLDLSGNLLEGKVP 735

Query: 715  KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQ 774
            +SL NC++LE+LDLG+N+ +DTFPC ++N S L VL+LR+NNF+GN+SCP  N +W  LQ
Sbjct: 736  ESLINCTILEVLDLGSNKINDTFPCLLRNISSLRVLVLRNNNFYGNLSCPSSNATWARLQ 795

Query: 775  IIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKG 834
            I+D+A N F+GRLP + L   +AM+     +   +K   ++FL +   YYQD+ITVT KG
Sbjct: 796  IVDIALNSFTGRLPNRMLSKWKAMIGAGNETHGPIK---FKFLKVGGLYYQDSITVTSKG 852

Query: 835  LEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREI 894
            LEM+L KIL +FTSID S N F+G IPE +G   +L  LNLSHNAL G IP  +GN+  +
Sbjct: 853  LEMQLVKILTLFTSIDVSCNKFQGQIPERLGQFSALYILNLSHNALDGQIPPSLGNVSNL 912

Query: 895  ESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWG 954
            ESLDLS N+L+G IP QL  L FLS LNLS N LVG IPT  Q Q+F  TS+ GN+ L G
Sbjct: 913  ESLDLSNNHLTGEIPRQLTDLTFLSFLNLSGNELVGDIPTGRQFQTFENTSYRGNEGLCG 972

Query: 955  PPLNVCPTNSSKALPSAP---ASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSRK 1005
            PPL+   +N+  + P           I+W  ++   G+  G G  V PL+  ++
Sbjct: 973  PPLSKLCSNNIASAPETDHIHKRVRGINWKLLSAEFGYLFGLGIFVMPLILWQR 1026

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1005
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.515	0.579	0.337	5.3e-100
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.518	0.552	0.340	8.6e-100
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.511	0.587	0.343	4.8e-93
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.841	0.860	0.321	3.6e-89
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.820	0.829	0.326	6.7e-88
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.787	0.826	0.311	4.7e-87
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.689	0.798	0.322	1.2e-83
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.690	0.819	0.332	1e-82
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.840	0.829	0.302	9.7e-80
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.680	0.843	0.326	1.6e-79

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
 Identities = 189/560 (33%), Positives = 280/560 (50%)

Query:   466 FVGTIELDAIQRLRNLFRLDLSY-NRLAVVAGSSVYCFPPLLTTLSLASCKLSAIP--NL 522
             F+G I   +I +L NL  L +S+ N        S++     L  L L+    + I   ++
Sbjct:   335 FIGPIP-SSISKLINLQELGISHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDI 393

Query:   523 RKQTK-LYHLDLSDNQISGEIPNWLWKIGKD--SFXXXXXXXXXXXXXEQPYSISDLTSL 579
                 K L  LDLS N +S    +    +  D  S              + P  +     L
Sbjct:   394 LPYFKTLRSLDLSGNLVSATNKS---SVSSDPPSQSIQSLYLSGCGITDFPEILRTQHEL 450

Query:   580 SVLDLHSNQIQGKIPP---LPPNAAYVDYSGNNFTS-SIPVDIGXXXXXXXXXXXXKNSL 635
               LD+ +N+I+G++P      PN  Y++ S N F     P                 N+ 
Sbjct:   451 GFLDVSNNKIKGQVPGWLWTLPNLFYLNLSNNTFIGFQRPTK---PEPSMAYLLGSNNNF 507

Query:   636 TGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATFPA 695
             TG IP  IC   +L  LDLS N  SG IP C+ N+  +               +S  FP 
Sbjct:   508 TGKIPSFICELRSLYTLDLSDNNFSGSIPRCMENLKSN-----LSELNLRQNNLSGGFPE 562

Query:   696 NC--SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR 753
             +   SLR+LD+  NQL G +P+SL   S LE+L++ +N+ +D FP W+ +  +L VL+LR
Sbjct:   563 HIFESLRSLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPFWLSSLQKLQVLVLR 622

Query:   754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQ 813
             SN F G I+       +P L+IID++ N F+G LP ++ +    M    G +  +  ++ 
Sbjct:   623 SNAFHGPIN----QALFPKLRIIDISHNHFNGSLPTEYFVEWSRMS-SLG-TYEDGSNVN 676

Query:   814 YRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCAL 873
             Y    L   YYQD++ +  KG+E +L +IL I+T++DFS N FEG IP+ +GLL+ L  L
Sbjct:   677 Y----LGSGYYQDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVL 732

Query:   874 NLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIP 933
             NLS+NA TG IPS IGNL  +ESLD+S N L G IP ++ +L+ LS +N S+N L G +P
Sbjct:   733 NLSNNAFTGHIPSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVP 792

Query:   934 TSTQLQSFLATSFEGNDRLWGPPLN-VCP---TNSSKALPSAPASTDE----IDWFFMAM 985
                Q  +   +SFEGN  L+G  L  VC    T +S      P + +E    I W   A+
Sbjct:   793 GGQQFLTQRCSSFEGNLGLFGSSLEEVCRDIHTPASHQQFETPQTEEEDEDLISWIAAAI 852

Query:   986 AIGFAVGFGSVVAPLMFSRK 1005
               G  + FG +   ++ S K
Sbjct:   853 GFGPGIAFGLMFGYILVSYK 872

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
 Identities = 192/564 (34%), Positives = 286/564 (50%)

Query:   466 FVGTIELDAIQRLRNLFRLDLSY-NRLAVVAGSSVYCFPPLLTTLSLASCKLSAIP--NL 522
             F+GTI   ++ R  NL   DLS+ N        S++     L  L L+    + I   ++
Sbjct:   378 FIGTIPR-SLSRFVNLTLFDLSHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLNDI 436

Query:   523 RKQTK-LYHLDLSDNQISGEIPNWLWKIGKD--SFXXXXXXXXXXXXXEQPYSISDLTSL 579
                 K L  LD+S N +S    +    +  D  S              + P  +     L
Sbjct:   437 LPYFKTLRSLDISGNLVSATNKS---SVSSDPPSQSIQSLYLSGCGITDFPEILRTQHEL 493

Query:   580 SVLDLHSNQIQGKIPP---LPPNAAYVDYSGNNFTS--SIPVDIGXXXX---XXXXXXXX 631
               LD+ +N+I+G++P      PN  Y++ S N F S  S     G               
Sbjct:   494 GFLDVSNNKIKGQVPGWLWTLPNLFYLNLSNNTFISFESSSKKHGLSSVRKPSMIHLFAS 553

Query:   632 KNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSA 691
              N+ TG IP  IC   +L  LDLS N  +G IP C+  +  +                  
Sbjct:   554 NNNFTGKIPSFICGLRSLNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKH 613

Query:   692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLI 751
              F    SLR+LD+  N L G +P+SL   S LE+L++ +N+ +DTFP W+ + S+L VL+
Sbjct:   614 IFE---SLRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQVLV 670

Query:   752 LRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMM-VDEGRSQSELK 810
             LRSN F G    P +  ++P L+IID++ N F+G LP ++ +   AM  + +   QS  K
Sbjct:   671 LRSNAFHG----PIHEATFPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSNEK 726

Query:   811 HLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL 870
             ++       S  YYQD++ +  KGL M+L +IL I+T++DFS N FEG IP+ +GLL+ L
Sbjct:   727 YMG------SGLYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKEL 780

Query:   871 CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930
               LNLS+NA  G IPS +GNL  +ESLD+S N L+G IP +L  L+FL+ +N S+N L G
Sbjct:   781 LVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAG 840

Query:   931 RIPTSTQLQSFLATSFEGNDRLWGPPLN-VC-----PTNS-SKALPSAPASTDEIDWFFM 983
              +P  TQ +    ++FE N  L+GP L+ VC     P +  ++   +     +EI W  +
Sbjct:   841 LVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEEEDEEEISW--I 898

Query:   984 AMAIGFAVG--FGSVVAPLMFSRK 1005
             A AIGF  G  FG  +  ++ S K
Sbjct:   899 AAAIGFIPGIVFGLTIGYILVSYK 922

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
 Identities = 188/547 (34%), Positives = 281/547 (51%)

Query:   474 AIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTK----LY 529
             +I RL NL  LDLS+  +      +++    LL  L L+    +   +L         L 
Sbjct:   323 SISRLVNLRTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLI 382

Query:   530 HLDLSDNQISGEIPNWLWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQI 589
              LDLS N +   + N                       E P  +     +  LD+ +N+I
Sbjct:   383 SLDLSGNHVL--VTNKSSVSDPPLGLIGSLNLSGCGITEFPDILRTQRQMRTLDISNNKI 440

Query:   590 QGKIPP-LPPNAAYVDYSGNNFTS---SIPVDIGXXXX-XXXXXXXXKNSLTGVIPESIC 644
             +G++P  L     Y+  S NNF     S  ++                N+ +G IP  IC
Sbjct:   441 KGQVPSWLLLQLEYMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFIC 500

Query:   645 NATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATFPANC--SLRTL 702
             +  +L++LDLS N  SG IP C+      +              +S + P     SLR+L
Sbjct:   501 SLRSLIILDLSNNNFSGAIPPCV-----GKFKSTLSDLNLRRNRLSGSLPKTIIKSLRSL 555

Query:   703 DLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNIS 762
             D++ N+LEG +P+SL + S LE+L++ +N+ +DTFP W+ +  +L VL+LRSN F G I 
Sbjct:   556 DVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSSLKKLQVLVLRSNAFHGRIH 615

Query:   763 CPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQA 822
               R+    P L+IID++ N F+G LP    +    M   E +++      +Y    +   
Sbjct:   616 KTRF----PKLRIIDISRNHFNGTLPSDCFVEWTGMHSLE-KNEDRFNE-KY----MGSG 665

Query:   823 YYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG 882
             YY D++ +  KGLEM+L +IL I+T++DFS N FEG IP  +GLL+ L  LNLS N  TG
Sbjct:   666 YYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTG 725

Query:   883 SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFL 942
              IPS +GNLRE+ESLD+S N LSG IP +L +L++L+ +N S+N LVG++P  TQ ++  
Sbjct:   726 HIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQS 785

Query:   943 ATSFEGNDRLWGPPLNVCPTNSSKALPSAPASTDEIDWF--FMAMAIGFAVGF--GSVVA 998
             A+SFE N  L G PL  C     +  PS  + T E +    ++A AIGF  G   G  + 
Sbjct:   786 ASSFEENLGLCGRPLEECRV-VHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLGLTIG 844

Query:   999 PLMFSRK 1005
              ++ S K
Sbjct:   845 HIVLSSK 851

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 292/907 (32%), Positives = 429/907 (47%)

Query:   131 LVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELY-LDGVNISAPGIEWCQALSSLVP 189
             ++ LDLS    +R  L   N N S  L  L +LR L  LD  N    G +   +L +L  
Sbjct:    85 VIELDLS-FSCLRGQL---NSNSS--LFRLPQLRFLTTLDLSNNDFIG-QIPSSLETL-S 136

Query:   190 KLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGL 249
              L  L LS    SG +  S+ NL  L  +    N+    +P  L   S+LTS  LS    
Sbjct:   137 NLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFSHNNFSGQIPSSLGYLSHLTSFNLSYNNF 196

Query:   250 HGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKNL 308
              G  P  I  L  L TL LS N    G LP    +L  L  LIL   +F G +P S+ NL
Sbjct:   197 SGRVPSSIGNLSYLTTLRLSRNSFF-GELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNL 255

Query:   309 KNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIF 368
              +L+ ++ +  NF G IP S+ +LS L    +S N+  G IPS   F NL  LD+  N+ 
Sbjct:   256 SHLTSIDLHKNNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPS--SFGNLNQLDI-LNVK 312

Query:   369 TGGISSIGWEQLLNLFHVD---LSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIX 425
             +  +S      LLNL  +    L +N L G++P ++  L  ++     +N F G +    
Sbjct:   313 SNKLSGSFPIALLNLRKLSTLSLFNNRLTGTLPSNMSSLSNLKLFDATENHFTGPLPS-S 371

Query:   426 XXXXXXXXXXXXXXXXXEGPIPL-SFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRL 484
                               G +   +                F G I   +I +L NL  L
Sbjct:   372 LFNIPSLKTITLENNQLNGSLGFGNISSYSNLTVLRLGNNNFRGPIHR-SISKLVNLKEL 430

Query:   485 DLS-YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRK---QTKLYH-LDLSDNQIS 539
             DLS YN   +V   +++     +  L+L+    +   ++ +     KL   LDLS + +S
Sbjct:   431 DLSNYNTQGLV-DFTIFSHLKSIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVS 489

Query:   540 GEIPNWLWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPP---L 596
                 + L                     E P  +     +  LD+ +N+I+G++P    +
Sbjct:   490 TTNKSSL--SNSSLVLISQLYLSGCGITEFPKFLRSQELMLTLDISNNKIKGQVPGWLWM 547

Query:   597 PPNAAYVDYSGNNFTS-SIPVDIGXXXX----XXXXXXXXKNSLTGVIPESICNATNLLV 651
              P   YV+ S N F        +G                 N+ TG IP  IC    L  
Sbjct:   548 LPVLNYVNLSNNTFIGFERSTKLGLTSIQEPPAMRQLFCSNNNFTGNIPSFICELPYLST 607

Query:   652 LDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATFPANC--SLRTLDLNGNQL 709
             LD S N  +G IPTC+ N+                  +S   P N   SL +LD+  NQL
Sbjct:   608 LDFSNNKFNGSIPTCMGNIQSPYLQALNLRHNR----LSGLLPENIFESLISLDVGHNQL 663

Query:   710 EGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVS 769
              G +P+SL++ S L +L++ +N+  DTFP W+ +   L VL+LRSN F+G I   +++  
Sbjct:   664 VGKLPRSLSHISSLGLLNVESNKISDTFPLWLSSLQELQVLVLRSNAFYGPIEKTQFS-- 721

Query:   770 WPMLQIIDLASNKFSGRLPQKWLLNLEAMM-VDEGRSQSELKHLQYRFLNLSQAYYQDAI 828
                L+IID++ N+F+G LP  + +N  AM  +DE   QS  + +   +++    Y+ D++
Sbjct:   722 --KLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMSNMYMSTDYFYF-DSM 778

Query:   829 TVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLI 888
              +  KG+EM+L ++L +FT IDFS N FEG IP+ +GLL+ L  LNLS+NAL+G I S +
Sbjct:   779 VLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNLSNNALSGHIASSM 838

Query:   889 GNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEG 948
             GNL  +ESLD+S N LSG IP +L  L +L+ +N S+N LVG +P  TQ Q+   +SFE 
Sbjct:   839 GNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPGGTQFQTQKCSSFED 898

Query:   949 NDRLWGPPLN-VC------PTNSSKALPSAPASTDE-IDWFFMAMAIGFAVG--FGSVVA 998
             N  L+GP L  +C      P  S  A P      +E I W  +A  IGF +G   G    
Sbjct:   899 NHGLYGPSLEKICDIHGKTPQQSDMA-PEPEEDEEEVISW--IAAVIGFILGTALGLTFG 955

Query:   999 PLMFSRK 1005
              ++FS K
Sbjct:   956 CILFSYK 962

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 878 (314.1 bits), Expect = 6.7e-88, P = 6.7e-88
 Identities = 293/898 (32%), Positives = 426/898 (47%)

Query:   147 KLENPNLSGL-LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPV 205
             +LE PN S   LQ+L  +   Y +  N   P  E+ + +     +L+ L+LS    SG +
Sbjct:   112 RLE-PNSSLFRLQHLQSVNLAYNNFTNSPIPA-EFSKFM-----RLERLNLSRSSFSGHI 164

Query:   206 DPSLSNLRSLSVIRLDMNDLYSPV------PEFL----ADFSNLTSLYLSSCGLHGAFPE 255
                L  L +L  + L  +  YSP       P FL     +F NL  L +SS  +  A P 
Sbjct:   165 SIKLLQLTNLVSLDLSSSFPYSPSSLSIEKPLFLHLLALNFMNLRELDMSSVDISSAIPI 224

Query:   256 KILQLPTLETLDLSYNELLQGSLPDFHQNL-SLETLILSAT-NFSGILPDSIKNLKNLSR 313
             +   + +L +L L    LL G  P+    + +LE++ L    N  G LP+ ++N  +L +
Sbjct:   225 EFSYMWSLRSLTLKGCNLL-GRFPNSVLLIPNLESISLDHNLNLEGSLPNFLRN-NSLLK 282

Query:   314 VEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS-LHMFRNLAYLDLSYNIFTGGI 372
             +  Y  +F+G IP S+S+L  L  L +  + FSG IPS L    +L+ L LS N F G I
Sbjct:   283 LSIYNTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEI 342

Query:   373 -SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIXXXXXXX 431
              SS+   + L LF  D+S NNL G+ P SL  L  ++++ +  N F G +          
Sbjct:   343 PSSVSNLKQLTLF--DVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTISQLSNL 400

Query:   432 XXXXXXXXXXXEGPIPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRLDLSYNRL 491
                         G IP S F                 T  +  I  L NL RL L  N  
Sbjct:   401 EFFSACDNSFT-GSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDNNNF 459

Query:   492 -AVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTK----LYHLDLSDNQISGEIPNWL 546
              A      V+     L +L+L+   LS   N+   ++    L +L+LS   I  E P + 
Sbjct:   460 KASQVDLDVFLSLKRLVSLALSGIPLSTT-NITSDSEFSSHLEYLELSGCNII-EFPEF- 516

Query:   547 WKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQI---QGKIPPLPPNA-AY 602
               I                  + P  +  L  LS +DL +N +    G +  L  +    
Sbjct:   517 --IRNQRNLSSIDLSNNNIKGQVPNWLWRLPELSTVDLSNNSLIGFNGSLKALSGSKIVM 574

Query:   603 VDYSGNNFTSSIPVDIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGM 662
             +D S N F    P+ +              N+ TG IP SIC   N L+LDLS N L G+
Sbjct:   575 LDLSSNAFQG--PLFMPPRGIQYFLGSY--NNFTGYIPPSICGLANPLILDLSNNNLHGL 630

Query:   663 IPTCLINMSDSQXXXXXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722
             IP CL     S                +    A   L +LD++ N LEG +P SLA CS 
Sbjct:   631 IPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKV-LSSLDVSHNTLEGKLPASLAGCSA 689

Query:   723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVS--W---PMLQIID 777
             LEIL++ +N  +DTFP W+ +  +L VL+LRSNNF G +    +NV   W   P+L+I D
Sbjct:   690 LEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTL----HNVDGVWFGFPLLRITD 745

Query:   778 LASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEM 837
             ++ N F G LP  + +N  A+      S+SE + LQY        YY   + +  KG+ M
Sbjct:   746 VSHNDFVGTLPSDYFMNWTAI------SKSETE-LQYIGDPEDYGYYTSLVLMN-KGVSM 797

Query:   838 KLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESL 897
             ++ +IL  +T IDF+ N  +G IPE +G+L+ L  LNLS NA TG IPS + NL  +ESL
Sbjct:   798 EMQRILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESL 857

Query:   898 DLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPL 957
             D+S N + G IP +L +L+ L  +N+S+N LVG IP  TQ      +S+EGN  ++G  L
Sbjct:   858 DISQNKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSL 917

Query:   958 -NVC-----PTNSSKALPSAPASTDEIDWF--FMAMAIGFAVG--FGSVVAPLMFSRK 1005
              +VC     P      LP + +S+ E D    ++A  +GFA G  FG  +  +M S K
Sbjct:   918 KDVCGDIHAPRPPQAVLPHSSSSSSEEDELISWIAACLGFAPGMVFGLTMGYIMTSHK 975

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 261/837 (31%), Positives = 390/837 (46%)

Query:   191 LQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLH 250
             L  L LS     G +  S+ NL  L+ + L  N     +   + + S LT L L      
Sbjct:   123 LTTLDLSFNDFKGQITSSIENLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFS 182

Query:   251 GAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIKNLK 309
             G  P  I  L  L  LDLSYN    G  P     LS L TL L +  FSG +P SI NL 
Sbjct:   183 GQAPSSICNLSHLTFLDLSYNRFF-GQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLS 241

Query:   310 NLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSY---N 366
             NL+ ++    NF+G IP+ + +LSQL +L +  N+F G IPS   F NL  L   Y   N
Sbjct:   242 NLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFVGEIPS--SFGNLNQLTRLYVDDN 299

Query:   367 IFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIXX 426
               +G   ++    L  L  + LS+N   G++P ++  L  +     +DN F G       
Sbjct:   300 KLSGNFPNV-LLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLF 358

Query:   427 XXXXXXXXXXXXXXXXEGPIPLSFFEX-XXXXXXXXXXXXFVGTIELDAIQRLRNLFRLD 485
                             +G +                    F+G I   +I +L  LFRLD
Sbjct:   359 TIPSLTYIRLNGNQL-KGTLEFGNISSPSNLYELDIGNNNFIGPIP-SSISKLVKLFRLD 416

Query:   486 LSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQT----KLYHLDLSDNQISGE 541
             +S+         S++     L  L+++    +   +L        +L  LDLS N +S  
Sbjct:   417 ISHLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLLLDLSGNHVSAT 476

Query:   542 IPNWLWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPPLP---P 598
               N        S              E P  +     L  LD+ +N+I+G++P      P
Sbjct:   477 --NKSSVSDPPSQLIQSLYLSGCGITEFPEFVRTQHELGFLDISNNKIKGQVPDWLWRLP 534

Query:   599 NAAYVDYSGNNFTS-SIPVDIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYN 657
                YV+ S N       P                 N+  G IP  IC   +L  LDLS N
Sbjct:   535 ILYYVNLSNNTLIGFQRP---SKPEPSLLYLLGSNNNFIGKIPSFICGLRSLNTLDLSDN 591

Query:   658 YLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSL 717
               +G IP C+ ++  +                   F     LR+LD+  NQL G +P+SL
Sbjct:   592 NFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFEI---LRSLDVGHNQLVGKLPRSL 648

Query:   718 ANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIID 777
             +  S LE+L++ +N+ +DTFP W+ +  +L VL+LRSN F G    P +  ++P L+IID
Sbjct:   649 SFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHG----PIHEATFPELRIID 704

Query:   778 LASNKFSGRLPQKWLLNLEAMM-VDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLE 836
             ++ N+F+G LP ++ +   AM  + +   QS  K++       S  YYQD++ +  KG+ 
Sbjct:   705 ISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMG------SGLYYQDSMVLMNKGVA 758

Query:   837 MKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIES 896
             M+L +IL I+T++DFS N FEG IP+ +GLL+ L  L+LS+NA +G +PS +GNL  +ES
Sbjct:   759 MELVRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALES 818

Query:   897 LDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPP 956
             LD+S N L+G IP +L  L+FL+ +N S+N L G +P   Q  +   ++FE N  L+G  
Sbjct:   819 LDVSKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSS 878

Query:   957 LN-VCP---TNSSKALPSAPASTDE----IDWFFMAMAIGFAVGFGSVVAPLMFSRK 1005
             L  VC    T +S      P + +E    I W   A+  G  + FG +   ++ S K
Sbjct:   879 LEEVCRDIHTPASHQQFETPETEEEDEDLISWIAAAIGFGPGIAFGLMFGYILVSYK 935

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 237/734 (32%), Positives = 353/734 (48%)

Query:   287 LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS 346
             L TL LS   FSG +P  I+N  +L+ ++     F+G IP+S+ +LSQL +LD+S N F 
Sbjct:   121 LTTLDLSYNYFSGQIPSCIENFSHLTTLDLSKNYFSGGIPSSIGNLSQLTFLDLSGNEFV 180

Query:   347 GPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPM 406
             G +P       L  L +  N  TG I  +    L +L  + LS N   G++P ++  L  
Sbjct:   181 GEMPFFGNMNQLTNLYVDSNDLTG-IFPLSLLNLKHLSDLSLSRNQFTGTLPSNMSSLSN 239

Query:   407 VQHLLLADNQFDGHVTEIXXXXXXXXXXXXXXXXXXEGPIPLSFFEX-XXXXXXXXXXXX 465
             +++     N F G +                      G +                    
Sbjct:   240 LEYFEAWGNAFTGTLPS-SLFTIASLTSINLRNNQLNGTLEFGNISSPSTLTVLDISNNN 298

Query:   466 FVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQ 525
             F+G I   +I +  NL  LDLS+         S++     L  L+L+    +   +L   
Sbjct:   299 FIGPIP-KSISKFINLQDLDLSHLNTQGPVDFSIFTNLKSLQLLNLSHLNTTTTIDLNAL 357

Query:   526 -----TKLYHLDLSDNQISGEIPNWLWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLS 580
                    +Y +DLS N +S      +                     E P  +     ++
Sbjct:   358 FSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCGIT-EFPELLRSQHKMT 416

Query:   581 VLDLHSNQIQGKIPP---LPPNAAYVDYSGNNFTS-SIPVDIGXXXXXXXXXXX---XKN 633
              LD+ +N+I+G++P      P   +VD S N FT      + G                N
Sbjct:   417 NLDISNNKIKGQVPGWLWTLPKLIFVDLSNNIFTGFERSTEHGLSLITKPSMQYLVGSNN 476

Query:   634 SLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATF 693
             + TG IP  IC   +L+ LDLS N L+G IP C+ N+  +                 + F
Sbjct:   477 NFTGKIPSFICALRSLITLDLSDNNLNGSIPPCMGNLKSTLSFLNLRQNRLGGGLPRSIF 536

Query:   694 PANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR 753
                 SLR+LD+  NQL G +P+S    S LE+L++ NN+ +DTFP W+ +  +L VL+LR
Sbjct:   537 K---SLRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFPFWLSSLKKLQVLVLR 593

Query:   754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAM---MVDEGRSQSELK 810
             SN F G    P ++ S+  L+II+L+ N+FSG LP  + +N  AM   M  E RSQ    
Sbjct:   594 SNAFHG----PIHHASFHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATEDRSQE--- 646

Query:   811 HLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL 870
                 +++  S  YY D++ +  KGLEM+L +IL I+T++DFS N  EG IP  +GLL+ L
Sbjct:   647 ----KYMGDSFRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKEL 702

Query:   871 CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930
               LNLS NA TG IPS +GNLRE+ESLD+S N LSG IP +L +L++L+ +N S+N L G
Sbjct:   703 HVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQLGG 762

Query:   931 RIPTSTQLQSFLATSFEGNDRLWGPPLN-VC-PTNSSKALPSAPASTDEID---WFFMAM 985
              +P  TQ +    +SF+ N  L+G  L  VC   ++       P   +E D   + ++A 
Sbjct:   763 LVPGGTQFRRQNCSSFKDNPGLYGSSLEEVCLDIHAPAPQQHEPPELEEEDREVFSWIAA 822

Query:   986 AIGFAVG--FGSVV 997
             AIGF  G  FG  +
Sbjct:   823 AIGFGPGIAFGLTI 836

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 240/722 (33%), Positives = 337/722 (46%)

Query:   287 LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS 346
             L  L L+  N  G +P S+ NL +L+ V  Y   F G IP S+ +L+QL +L ++ N  +
Sbjct:   112 LRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLT 171

Query:   347 GPIPS-LHMFRNLAYLDLSYNIFTGGI-SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFEL 404
             G IPS L     L  L+L  N   G I  SIG   L  L ++ L+ NNL G IP SL  L
Sbjct:   172 GEIPSSLGNLSRLVNLELFSNRLVGKIPDSIG--DLKQLRNLSLASNNLIGEIPSSLGNL 229

Query:   405 PMVQHLLLADNQFDGHVTEIXXXXXXXXXXXXXXXXXXEGPIPLSFFEXXXXXXXXXXXX 464
               + HL+L  NQ  G V                      G IP+SF              
Sbjct:   230 SNLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSN 288

Query:   465 XFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSA---IPN 521
              F  T   D +    NL   D+SYN  +     S+   P L  ++ L   + +      N
Sbjct:   289 NFTSTFPFD-MSIFHNLEYFDVSYNSFSGPFPKSLLLIPSL-ESIYLQENQFTGPIEFAN 346

Query:   522 LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSV 581
                 TKL  L L  N++ G IP     I +                  P +IS L +L  
Sbjct:   347 TSSSTKLQDLILGRNRLHGPIPE---SISRLLNLEELDISHNNFTGAIPPTISKLVNLLH 403

Query:   582 LDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGXXXXXXXXXXXXKNSLTGVIPE 641
             LDL  N ++G++P        +  S N+F+S    +               NS  G IP 
Sbjct:   404 LDLSKNNLEGEVPACLWRLNTMVLSHNSFSSF--ENTSQEEALIEELDLNSNSFQGPIPY 461

Query:   642 SICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATFPANCSLRT 701
              IC  ++L  LDLS N  SG IP+C+ N S S              T+   F     L +
Sbjct:   462 MICKLSSLGFLDLSNNLFSGSIPSCIRNFSGS-IKELNLGDNNFSGTLPDIFSKATELVS 520

Query:   702 LDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNI 761
             LD++ NQLEG  PKSL NC  LE++++ +N+  D FP W+++   LHVL LRSN F+G +
Sbjct:   521 LDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPL 580

Query:   762 SCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQ 821
                  ++ +  L+IID++ N FSG LP  +  N + M         E+      F   + 
Sbjct:   581 YHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTT----LTEEMDQYMTEFWRYAD 636

Query:   822 AYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALT 881
             +YY +   V  KG++M   +I   F +IDFS N   G IPE +G L+ L  LNLS NA T
Sbjct:   637 SYYHEMEMVN-KGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFT 695

Query:   882 GSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSF 941
               IP  + NL ++E+LD+S N LSG IP  LA+L+FLS +N S+N L G +P  TQ Q  
Sbjct:   696 SVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQ 755

Query:   942 LATSFEGNDRLWGPPLNVC----PTNSSKALPSAPASTDE--IDWFFMAMAIGFAVGFGS 995
               +SF  N  L+G   ++C      N +  LP   +  +E   +W   A+A G  V  G 
Sbjct:   756 KCSSFLDNPGLYGLE-DICRDTGALNPTSQLPEDLSEAEENMFNWVAAAIAYGPGVLCGL 814

Query:   996 VV 997
             V+
Sbjct:   815 VI 816

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 276/913 (30%), Positives = 431/913 (47%)

Query:   131 LVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPK 190
             ++ LDLS + F+   LK  N +L      L  LR+L L   N +   I    A    +  
Sbjct:   118 VIGLDLSSI-FLYGQLK-SNSSLF----KLRHLRDLNLANNNFNNSPIP---AEFDKLTG 168

Query:   191 LQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLY------------SPVPEFLADFSN 238
             L+ L LS   LSG +  +L  L  L  + L  +D +            S +P    +  N
Sbjct:   169 LERLDLSQSSLSGQIPINLLQLTKLVSLDLSSSDFFGDESFHYLSIDKSFLPLLARNLRN 228

Query:   239 LTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL-SLETLILSAT-N 296
             L  L +S   +    PE+   + +L +L+L+   L  G  P     + +L+++ L    N
Sbjct:   229 LRELDMSYVKISSEIPEEFSNIRSLRSLNLNGCNLF-GEFPSSILLIPNLQSIDLGNNPN 287

Query:   297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMF 355
               G LP   +N  +L ++     +F+G IP S+S L  L  L +S ++FSG IP SL   
Sbjct:   288 LRGNLPVFHEN-NSLLKLTILYTSFSGAIPDSISSLKNLTSLTLSVSYFSGKIPFSLGNL 346

Query:   356 RNLAYLDLSYNIFTGGI-SSIG-WEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLA 413
              +L++L LS N   G I SSIG   QL N F+V    N L G++P +L  L  +  + L+
Sbjct:   347 SHLSHLSLSSNNLIGEIPSSIGNLNQLTN-FYV--GGNKLSGNLPATLSNLTKLNTISLS 403

Query:   414 DNQFDGHVTEIXXXXXXXXXXXXXXXXXXEGPIPLSFFEXXXXXXXXXXXXXFVGTIELD 473
              NQF G +                      G I     +                 + ++
Sbjct:   404 SNQFTGSLPPSISQLSKLKFFFADDNPFI-GAILSPLLKIPSLTRIHLSYNQLNDLVGIE 462

Query:   474 AIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPNLRKQ--TKLY 529
              I  L NL    + +     V    +  F  L  L TL ++   +S   N+     + L 
Sbjct:   463 NIFMLPNLETFYIYHYNYTKVRPLDLNVFSSLKQLGTLYISRIPISTT-NITSDFPSNLE 521

Query:   530 HLDLSDNQISGEIPNWLWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQI 589
             +L L    I+ + P ++ K G++               + P  +  + +L+ +DL +N +
Sbjct:   522 YLSLRSCNIT-DFPEFIRK-GRN--LQILDLSNNKIKGQVPDWLWRMPTLNSVDLSNNSL 577

Query:   590 QG---KIPPLPPNA-AYVDYSGNNFTSSIPVDIGXXXXXXXXXXXXKNSLTGVIPESICN 645
              G    +   P +    VD S N F    P+ +              N+ TG IP SIC 
Sbjct:   578 SGFHVSVKASPESQLTSVDLSSNAFQG--PLFLPSKSLRYFSGS--NNNFTGKIPRSICG 633

Query:   646 ATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATFPANCSLRTLDLN 705
              ++L +LDLS N L+G +P CL  +  S              ++   F     LR+LD++
Sbjct:   634 LSSLEILDLSNNNLNGSLPWCLETLMSS-LSDLDLRNNSLSGSLPEIFMNATKLRSLDVS 692

Query:   706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPR 765
              N++EG +P SL  CS LE+L++G+N+ +D FP  + +  +L VL+L SN F G +    
Sbjct:   693 HNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQVLVLHSNKFHGTL---- 748

Query:   766 YNVS--W---PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLS 820
             +NV   W   P LQIID++ N F G LP  + +N  AM   +  +  E +++Q   +  S
Sbjct:   749 HNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNN-IEPEYIQNPSVYGS 807

Query:   821 QAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNAL 880
                Y  ++ +  KG+ M++ ++L I+T+ID S N   G IP+ +GLL+ L  LN+S N  
Sbjct:   808 SLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGF 867

Query:   881 TGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQS 940
             TG IPS + NL+ +ESLD+S NN+SG IP +L +L+ L+ +N+S+N LVG IP  TQ Q 
Sbjct:   868 TGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQR 927

Query:   941 FLATSFEGNDRLWGPPL-NVCP-TNSSKALPSAPAST----DEIDWFFMAMAIGFAVG-- 992
                +S+EGN  L GP L NVC     S    + P  T    +E  + ++A  +GFA G  
Sbjct:   928 QKCSSYEGNPGLNGPSLENVCGHIKESTPTQTEPLETKEEEEEESFSWIAAGLGFAPGVV 987

Query:   993 FGSVVAPLMFSRK 1005
             FG  +  ++ S K
Sbjct:   988 FGLAMGYIVVSYK 1000

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 244/747 (32%), Positives = 359/747 (48%)

Query:   296 NFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS--LH 353
             NF+G +P +I N  NL  +      F G  PT + + ++L YLD+S N F+G +P     
Sbjct:    74 NFTGTVPTTICNFPNLKSLNLSFNYFAGEFPTVLYNCTKLQYLDLSQNLFNGSLPDDINR 133

Query:   354 MFRNLAYLDLSYNIFTGGI-SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLL 412
             +   L YLDL+ N F G I  +IG    L + ++ +S  +  G+ P  + +L  ++ L L
Sbjct:   134 LAPKLKYLDLAANSFAGDIPKNIGRISKLKVLNLYMSEYD--GTFPSEIGDLSELEELQL 191

Query:   413 ADN-QFDGHVTEIXXXXXXXXXXXXXXXXXXEGPIPLSFFEXXXXXXXXXXXXX-FVGTI 470
             A N +F                          G I    FE                G I
Sbjct:   192 ALNDKFTPVKLPTEFGKLKKLKYMWLEEMNLIGEISAVVFENMTDLKHVDLSVNNLTGRI 251

Query:   471 ELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLS-AIP-NLRKQTKL 528
               D +  L+NL  L L  N L      S+      L  L L++  L+ +IP ++   T L
Sbjct:   252 P-DVLFGLKNLTELYLFANDLTGEIPKSISA--KNLVHLDLSANNLNGSIPESIGNLTNL 308

Query:   529 YHLDLSDNQISGEIPNWLWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQ 588
               L L  N+++GEIP     IGK                E P  I  ++ L   ++  NQ
Sbjct:   309 ELLYLFVNELTGEIPR---AIGKLPELKELKLFTNKLTGEIPAEIGFISKLERFEVSENQ 365

Query:   589 IQGKIPPLPPNA----AYVDYSGNNFTSSIPVDIG---------------XXXXXXXXXX 629
             + GK+P    +     + + YS NN T  IP  +G                         
Sbjct:   366 LTGKLPENLCHGGKLQSVIVYS-NNLTGEIPESLGDCETLSSVLLQNNGFSGSVTISNNT 424

Query:   630 XXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTV 689
                N+ TG IP  IC   +L++LDLS N  +G IP C+ N+S  +              +
Sbjct:   425 RSNNNFTGKIPSFICELHSLILLDLSTNKFNGSIPRCIANLSTLEVLNLGKNH------L 478

Query:   690 SATFPANCS--LRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRL 747
             S + P N S  ++++D+  NQL G +P+SL   S LE+L++ +N+ +DTFP W+ +  +L
Sbjct:   479 SGSIPENISTSVKSIDIGHNQLAGKLPRSLVRISSLEVLNVESNKINDTFPFWLDSMQQL 538

Query:   748 HVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS 807
              VL+LRSN F G+I+    N  +  L+IID++ N F+G LP  + +N  AM    G+ + 
Sbjct:   539 QVLVLRSNAFHGSIN---QN-GFSKLRIIDISGNHFNGTLPLDFFVNWTAMF-SLGKIED 593

Query:   808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLL 867
             +     Y   N    YY D+I V IKG+ +++ +ILN FT+IDFS N FEG IP  +GLL
Sbjct:   594 QYMGTNYMRTN----YYSDSIVVMIKGIALEMVRILNTFTTIDFSGNKFEGEIPRSVGLL 649

Query:   868 QSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNH 927
             + L  LNLS+N  TG IPS +GNL E+ESLD+S N LSG IP +L  L++L+ +N S N 
Sbjct:   650 KELHVLNLSNNGFTGHIPSSMGNLIELESLDVSQNKLSGEIPPELGKLSYLAYMNFSQNQ 709

Query:   928 LVGRIPTSTQLQSFLATSFEGNDRLWGPPLN-VC-----PTNSSKALPSAPASTDEI-DW 980
              VG +P  TQ Q+   +SF  N RL+G  L  VC      T     +P      +E+ +W
Sbjct:   710 FVGLVPGGTQFQTQPCSSFADNPRLFGLSLERVCVDIHKKTPQQSEMPEPEEDEEEVMNW 769

Query:   981 FFMAMAIGFAVGF--GSVVAPLMFSRK 1005
                A AIG   G   G  +  ++ S K
Sbjct:   770 --TAAAIGSIPGISIGLTMGYILVSYK 794

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1005
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-69
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.003
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  248 bits (636), Expect = 6e-69
 Identities = 201/632 (31%), Positives = 302/632 (47%), Gaps = 65/632 (10%)

Query: 386  VDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGP 445
            +DLS  N+ G I  ++F LP +Q + L++NQ  G + +    +SS L  L+LS+NN  G 
Sbjct: 74   IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133

Query: 446  IPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL 505
            IP     + NL+ L LS+N   G I  D I    +L  LDL  N L       V   P  
Sbjct: 134  IPRGS--IPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVL-------VGKIPNS 183

Query: 506  LTTLS------LASCKLSA-IP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGK-DSFNH 556
            LT L+      LAS +L   IP  L +   L  + L  N +SGEIP    +IG   S NH
Sbjct: 184  LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY---EIGGLTSLNH 240

Query: 557  LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP---PNAAYVDYSGNNFTSS 613
            L+L +N L     P S+ +L +L  L L+ N++ G IPP          +D S N+ +  
Sbjct: 241  LDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 614  IPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDS 673
            IP  +    +L I   FS N+ TG IP ++ +   L VL L  N  SG IP  L   ++ 
Sbjct: 300  IPELVIQLQNLEILHLFS-NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN- 357

Query: 674  QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF 733
             L VL+L  NNL G +     ++ +L  L L  N LEG +PKSL  C  L  + L +N F
Sbjct: 358  -LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416

Query: 734  DDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLL 793
                P        ++ L + +NN  G I+  ++++  P LQ++ LA NKF G LP     
Sbjct: 417  SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM--PSLQMLSLARNKFFGGLP----- 469

Query: 794  NLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSR 853
                   D   S+      +   L+LS+  +  A+   +      L++++ +      S 
Sbjct: 470  -------DSFGSK------RLENLDLSRNQFSGAVPRKL----GSLSELMQL----KLSE 508

Query: 854  NNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLA 913
            N   G IP+E+   + L +L+LSHN L+G IP+    +  +  LDLS N LSG IP  L 
Sbjct: 509  NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Query: 914  SLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNSSKALPSAP- 972
            ++  L  +N+S+NHL G +P++    +  A++  GN  L       C  +++  LP    
Sbjct: 569  NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL-------CGGDTTSGLPPCKR 621

Query: 973  ASTDEIDWFFMAMAIGFAVGFGSVVAPLMFSR 1004
                   WF++   +G  +    V    +F R
Sbjct: 622  VRKTPSWWFYITCTLGAFLVLALVAFGFVFIR 653

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  222 bits (566), Expect = 6e-60
 Identities = 218/726 (30%), Positives = 309/726 (42%), Gaps = 160/726 (22%)

Query: 1   MVLVSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLD 60
           + L      +++  LLL  KS +   +     +  W+ S D C W G+ C+ + RV+ +D
Sbjct: 19  LFLNFSMLHAEELELLLSFKSSI---NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSID 75

Query: 61  LSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLT-NLTTLNLSNAGFAG 119
           LS ++IS  I  SS++F L Y+Q++NL+ N  +   IP  +   + +L  LNLSN  F G
Sbjct: 76  LSGKNISGKI--SSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 120 QIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIE 179
            IP     +  L TLDLS            N  LSG         E+  D  + S     
Sbjct: 133 SIP--RGSIPNLETLDLS------------NNMLSG---------EIPNDIGSFS----- 164

Query: 180 WCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNL 239
                      L+VL L G  L G +  SL+NL SL  + L  N L   +P  L    +L
Sbjct: 165 ----------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 240 TSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSG 299
             +YL    L G  P +I  L +L  LDL YN                        N +G
Sbjct: 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN------------------------NLTG 250

Query: 300 ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLA 359
            +P S+ NLKNL  +  Y    +GPIP S+  L +L+ LD+S N  SG IP L +     
Sbjct: 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI----- 305

Query: 360 YLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG 419
                              QL NL  + L  NN  G IP +L  LP +Q L L  N+F G
Sbjct: 306 -------------------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

Query: 420 HVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTI--ELDAIQR 477
            + +     ++ L  LDLS NNL G IP       NL  L+L SN   G I   L A + 
Sbjct: 347 EIPKNLGKHNN-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405

Query: 478 LRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKL---YHLDLS 534
           LR   R+ L  N                       S +L       + TKL   Y LD+S
Sbjct: 406 LR---RVRLQDNSF---------------------SGELP-----SEFTKLPLVYFLDIS 436

Query: 535 DNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIP 594
           +N + G I +  W                           D+ SL +L L  N+  G +P
Sbjct: 437 NNNLQGRINSRKW---------------------------DMPSLQMLSLARNKFFGGLP 469

Query: 595 PL--PPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVL 652
                     +D S N F+ ++P  +GS   L +    S+N L+G IP+ + +   L+ L
Sbjct: 470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSEL-MQLKLSENKLSGEIPDELSSCKKLVSL 528

Query: 653 DLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGM 712
           DLS+N LSG IP     M    L  L+L +N L+G +        SL  ++++ N L G 
Sbjct: 529 DLSHNQLSGQIPASFSEM--PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586

Query: 713 VPKSLA 718
           +P + A
Sbjct: 587 LPSTGA 592

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.1 bits (213), Expect = 6e-17
 Identities = 87/285 (30%), Positives = 127/285 (44%), Gaps = 22/285 (7%)

Query: 75  SLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTL 134
           +L SL  LQ L L  N F+  EIP  LG   NLT L+LS     G+IP  +     L  L
Sbjct: 327 ALTSLPRLQVLQLWSNKFSG-EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385

Query: 135 DLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQV- 193
            L         L+ E P   G  ++L  +R   L   + S         L S   KL + 
Sbjct: 386 IL-----FSNSLEGEIPKSLGACRSLRRVR---LQDNSFSG-------ELPSEFTKLPLV 430

Query: 194 --LSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHG 251
             L +S   L G ++    ++ SL ++ L  N  +  +P+       L +L LS     G
Sbjct: 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSG 489

Query: 252 AFPEKILQLPTLETLDLSYNELLQGSLPD-FHQNLSLETLILSATNFSGILPDSIKNLKN 310
           A P K+  L  L  L LS N+L  G +PD       L +L LS    SG +P S   +  
Sbjct: 490 AVPRKLGSLSELMQLKLSENKL-SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548

Query: 311 LSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMF 355
           LS+++      +G IP ++ ++  LV +++S NH  G +PS   F
Sbjct: 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.6 bits (186), Expect = 6e-14
 Identities = 33/78 (42%), Positives = 52/78 (66%)

Query: 858 GPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNF 917
           G IP ++  L+ L ++NLS N++ G+IP  +G++  +E LDLS N+ +G+IP  L  L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 918 LSVLNLSYNHLVGRIPTS 935
           L +LNL+ N L GR+P +
Sbjct: 492 LRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 4e-10
 Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 7/77 (9%)

Query: 848 SIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT 907
           SI+ S N+  G IP  +G + SL  L+LS+N+  GSIP  +G L  +  L+L+ N+LSG 
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 908 IPAQL-------ASLNF 917
           +PA L       AS NF
Sbjct: 506 VPAALGGRLLHRASFNF 522

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 8e-10
 Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 872 ALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR 931
            L L +  L G IP+ I  LR ++S++LS N++ G IP  L S+  L VL+LSYN   G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 932 IPTST-QLQSFLATSFEGN 949
           IP S  QL S    +  GN
Sbjct: 482 IPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 7e-09
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 635 LTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFP 694
           L G IP  I    +L  ++LS N + G IP  L ++  + L VL+L  N+ NG++  +  
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI--TSLEVLDLSYNSFNGSIPESLG 487

Query: 695 ANCSLRTLDLNGNQLEGMVPKSL 717
              SLR L+LNGN L G VP +L
Sbjct: 488 QLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 58.1 bits (140), Expect = 1e-08
 Identities = 81/290 (27%), Positives = 125/290 (43%), Gaps = 12/290 (4%)

Query: 300 ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLA 359
           +LP S+  L +L  +     +       ++ +L  L  LD++ N     I  L    NL 
Sbjct: 61  LLPSSLSRLLSLDLLSPSGISSLD-GSENLLNLLPLPSLDLNLNRLRSNISELLELTNLT 119

Query: 360 YLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG 419
            LDL  N  T  I  +      NL  +DLS N +  S+P  L  LP +++L L+ N    
Sbjct: 120 SLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD 177

Query: 420 HVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLR 479
               +SN S+  L+ LDLS N +   +P     L  L+ L LS+N       L ++  L+
Sbjct: 178 LPKLLSNLSN--LNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS--IIELLSSLSNLK 232

Query: 480 NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQIS 539
           NL  L+LS N+L              L TL L++ ++S+I +L   T L  LDLS N +S
Sbjct: 233 NLSGLELSNNKL--EDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLS 290

Query: 540 GEIP--NWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSN 587
             +P    L  + +   N L     L + L      +++ S         
Sbjct: 291 NALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEA 340

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 8/99 (8%)

Query: 45  WSGVDC---DEAGR--VIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPS 99
           WSG DC      G+  + GL L  + +   I N  S   L++LQS+NL+ N      IP 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRG-NIPP 460

Query: 100 GLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSG 138
            LG++T+L  L+LS   F G IP  +  +T L  L+L+G
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 9e-07
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 16/86 (18%)

Query: 807 SELKHLQYRFLNLSQAYYQDAITV---TIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEE 863
           S+L+HLQ   +NLS    +  I     +I  LE            +D S N+F G IPE 
Sbjct: 439 SKLRHLQS--INLSGNSIRGNIPPSLGSITSLE-----------VLDLSYNSFNGSIPES 485

Query: 864 MGLLQSLCALNLSHNALTGSIPSLIG 889
           +G L SL  LNL+ N+L+G +P+ +G
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 44/201 (21%)

Query: 146 LKLENP-NLSGLLQNLA---ELRELYLDGVNISAPGIEW-CQALSSLVPKLQVLSLSGCF 200
           LKLE   ++ G+++ L    EL E+ L G  I    +E  C  +++ V  L+V++ S  F
Sbjct: 11  LKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIAN-VRNLRVVNFSDAF 69

Query: 201 LSGPVDPSLSNLRSLS----------VIRLDMNDLYSPVPEFLADF----SNLTSLYLSS 246
                D   SNL  L            + L  N   S  PE L D     ++L  L L++
Sbjct: 70  TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNN 129

Query: 247 CGL-------------HGAFPEKILQLPTLETLDLSYNELLQGS------LPDFHQNLSL 287
            GL             H A+ +K    P LE +    N L  GS      L + H+NL  
Sbjct: 130 NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189

Query: 288 ETLILSATNFSGILPDSIKNL 308
             +       +GI P+ +  L
Sbjct: 190 VKIQ-----QNGIRPEGVTML 205

Length = 388

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
           L +LDLS+N L      +F  L NLK+L LS N  + +I  +A   L +L  LDLS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 7e-06
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 386 VDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGP 445
           + L +  L G IP  + +L  +Q + L+ N   G++   S  S + L+ LDLS N+  G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGS 481

Query: 446 IPLSFFELKNLKILLLSSNKFVGTI 470
           IP S  +L +L+IL L+ N   G +
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 1e-05
 Identities = 75/239 (31%), Positives = 108/239 (45%), Gaps = 12/239 (5%)

Query: 558 NLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAY-VDYSGNNFTSSIPV 616
            LS + + SL+   ++ +L  L  LDL+ N+++  I  L            NN  + IP 
Sbjct: 74  LLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP 133

Query: 617 DIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLG 676
            IG   S       S N +   +P  + N  NL  LDLS+N LS  +P  L N+  S L 
Sbjct: 134 LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNL--SNLN 189

Query: 677 VLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736
            L+L  N ++  +        +L  LDL+ N +   +  SL+N   L  L+L NN+ +D 
Sbjct: 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED- 246

Query: 737 FPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL 795
            P  + N S L  L L SNN   +IS      +   L   DL+ N  S  LP   LL L
Sbjct: 247 LPESIGNLSNLETLDL-SNNQISSISSLGSLTNLREL---DLSGNSLSNALPLIALLLL 301

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 2e-05
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 347 GPIPS-LHMFRNLAYLDLSYNIFTGGIS-SIGWEQLLNLFHVDLSHNNLGGSIPQSLFEL 404
           G IP+ +   R+L  ++LS N   G I  S+G   + +L  +DLS+N+  GSIP+SL +L
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLG--SITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 405 PMVQHLLLADNQFDGHV 421
             ++ L L  N   G V
Sbjct: 490 TSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 43/84 (51%)

Query: 678 LNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF 737
           L L    L G +         L++++L+GN + G +P SL + + LE+LDL  N F+ + 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 738 PCWVKNASRLHVLILRSNNFFGNI 761
           P  +   + L +L L  N+  G +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 3e-05
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           ++LS  SI   I    SL S+  L+ L+L++N FN + IP  LG LT+L  LNL+    +
Sbjct: 447 INLSGNSIRGNI--PPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLS 503

Query: 119 GQIPIQVSG 127
           G++P  + G
Sbjct: 504 GRVPAALGG 512

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 5e-05
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 652 LDLSYNYLSGMIPTCLINMSDSQ-LGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE 710
           L L    L G IP    ++S  + L  +NL  N++ G +  +  +  SL  LDL+ N   
Sbjct: 423 LGLDNQGLRGFIPN---DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 711 GMVPKSLANCSVLEILDLGNNQFDDTFP 738
           G +P+SL   + L IL+L  N      P
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF 733
            L  L+L  N L       F    +L+ LDL+GN L  + P++ +    L  LDL  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 9e-05
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 299 GILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRN 357
           G +P+ I  L++L  +     +  G IP S+  ++ L  LD+S+N F+G IP SL    +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 358 LAYLDLSYNIFTG 370
           L  L+L+ N  +G
Sbjct: 492 LRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 1e-04
 Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 32/132 (24%)

Query: 413 ADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIEL 472
           AD QFD      S      +D L L +  L G IP    +L++L+ + LS N   G I  
Sbjct: 407 ADCQFD------STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP 460

Query: 473 DAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIP-NLRKQTKLYHL 531
            ++  + +L  LDLSYN      GS                     IP +L + T L  L
Sbjct: 461 -SLGSITSLEVLDLSYNSF---NGS---------------------IPESLGQLTSLRIL 495

Query: 532 DLSDNQISGEIP 543
           +L+ N +SG +P
Sbjct: 496 NLNGNSLSGRVP 507

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 82/289 (28%), Positives = 125/289 (43%), Gaps = 44/289 (15%)

Query: 78  SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLS 137
           SL  L++++L  +  N  EIP  L   TNL TL LS+     ++P  +  + +L  LD+S
Sbjct: 632 SLTGLRNIDLRGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689

Query: 138 GMYFVRAPLKLEN-PNLSGLLQNLAELRELYLDGV-------NISAPGIEW-------CQ 182
                     LE  P  +G+  NL  L  L L G        +IS   I W        +
Sbjct: 690 RC------ENLEILP--TGI--NLKSLYRLNLSGCSRLKSFPDIST-NISWLDLDETAIE 738

Query: 183 ALSSLVPKLQVLSLSGCFLSG--------PVDPSLSNLRSLSVIRLDMNDLYSPV--PEF 232
              S +    +  L  C +          P+ P ++ L S S+ RL ++D+ S V  P  
Sbjct: 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML-SPSLTRLFLSDIPSLVELPSS 797

Query: 233 LADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLIL 292
           + +   L  L + +C      P  I  L +LE+LDLS    L+ + PD   N+S   L L
Sbjct: 798 IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR-TFPDISTNIS--DLNL 853

Query: 293 SATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMS 341
           S T    + P  I+   NLS ++   CN    +  ++S L  L  +D S
Sbjct: 854 SRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 60/266 (22%), Positives = 87/266 (32%), Gaps = 65/266 (24%)

Query: 98  PSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLL 157
             GL     L  L+LS+          +  + R  +L           LKL N  L    
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQE---------LKLNNNGLGD-- 122

Query: 158 QNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNL----R 213
                       G+ +        + L  L P L+ L L    L G    +L+      R
Sbjct: 123 -----------RGLRLL------AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165

Query: 214 SLSVIRLDMNDLYSP----VPEFLADFSNLTSLYLSSCGLH----GAFPEKILQLPTLET 265
            L  + L  N +       + E L    NL  L L++ GL      A  E +  L +LE 
Sbjct: 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225

Query: 266 LDLSYNELLQGSLPDFH-----QNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCN 320
           L+L  N L               N+SL TL LS  +   I  D  K+L            
Sbjct: 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND---ITDDGAKDLA----------- 271

Query: 321 FNGPIPTSMSDLSQLVYLDMSFNHFS 346
                   +++   L+ LD+  N F 
Sbjct: 272 ------EVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 5e-04
 Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 271 NELLQGSLP-DFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSM 329
           N+ L+G +P D  +   L+++ LS  +  G +P S+ ++ +L  ++    +FNG IP S+
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 330 SDLSQLVYLDMSFNHFSGPIPS 351
             L+ L  L+++ N  SG +P+
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 69/286 (24%), Positives = 96/286 (33%), Gaps = 47/286 (16%)

Query: 478 LRNLFRLDLSYNRLAVVAGS---SVYCFPPLLTTLSLASCKLSAIP--------NLRKQT 526
           L  L  L L  N L   A     S     P L  L L+  +   IP         L K  
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81

Query: 527 KLYHLDLSDNQISGEIPNWLWKIGKDSF-NHLNLSHNLLVSLEQPYSISDLTSLSVLDLH 585
            L  LDLSDN +  +    L  + + S    L L++N                  + D  
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-----------------GLGDRG 124

Query: 586 SNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGS-FMSLSIF--FSFSKNSLTGVIPES 642
              +   +  LPP    +    N    +    +     +       + + N +      +
Sbjct: 125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184

Query: 643 ICNA----TNLLVLDLSYNYLS--GMIPTCLINMSDSQLGVLNLRRNNLNGT-----VSA 691
           +        NL VLDL+ N L+  G         S   L VLNL  NNL         SA
Sbjct: 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244

Query: 692 TFPANCSLRTLDLNGNQLE----GMVPKSLANCSVLEILDLGNNQF 733
               N SL TL L+ N +       + + LA    L  LDL  N+F
Sbjct: 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 8e-04
 Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 57/161 (35%)

Query: 531 LDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
           L L +  + G IPN + K+       +NLS N +     P S+  +TSL VLDL      
Sbjct: 423 LGLDNQGLRGFIPNDISKLRH--LQSINLSGNSIRG-NIPPSLGSITSLEVLDL------ 473

Query: 591 GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLL 650
                                                   S NS  G IPES+   T+L 
Sbjct: 474 ----------------------------------------SYNSFNGSIPESLGQLTSLR 493

Query: 651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA 691
           +L+L+ N LSG +P        + LG   L R + N T +A
Sbjct: 494 ILNLNGNSLSGRVP--------AALGGRLLHRASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 190 KLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGL 249
            LQ ++LSG  + G + PSL ++ SL V+ L  N     +PE L   ++L  L L+   L
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 250 HGAFP 254
            G  P
Sbjct: 503 SGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 15/69 (21%)

Query: 527 KLYHLDLSDNQISGEIPNWLWKIGKDSFN------HLNLSHNLLVSLEQPYSISDLTSLS 580
            L  LDLS+N+        L  I   +F        L+LS N L S+  P + S L SL 
Sbjct: 1   NLKSLDLSNNR--------LTVIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLR 51

Query: 581 VLDLHSNQI 589
            LDL  N +
Sbjct: 52  SLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 42/163 (25%), Positives = 54/163 (33%), Gaps = 23/163 (14%)

Query: 648 NLLVLDLSYNYLS--GMIPTCLINMSDSQLGVLNLRRNNLNGTVSAT----FPANCSLRT 701
            L  L L  N L             ++  L  LNL  N +             ANC+L  
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 702 LDLNGNQLE-------GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNA-----SRLHV 749
           LDLN N L             SL +   LE+L+LG+N   D     + +A       L  
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKS---LEVLNLGDNNLTDAGAAALASALLSPNISLLT 254

Query: 750 LILRSNNF--FGNISCPRYNVSWPMLQIIDLASNKFSGRLPQK 790
           L L  N+    G             L  +DL  NKF     Q 
Sbjct: 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 0.002
 Identities = 27/88 (30%), Positives = 46/88 (52%)

Query: 242 LYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGIL 301
           L L + GL G  P  I +L  L++++LS N +     P      SLE L LS  +F+G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 302 PDSIKNLKNLSRVEFYLCNFNGPIPTSM 329
           P+S+  L +L  +     + +G +P ++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 22/56 (39%), Positives = 30/56 (53%)

Query: 873 LNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
           L+LS+N LT         L  ++ LDLS NNL+   P   + L  L  L+LS N+L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 56/228 (24%), Positives = 82/228 (35%), Gaps = 44/228 (19%)

Query: 263 LETLDLSYNEL---LQGSLPDFHQNLSLETLILSATNFS-GILPDSIKNLKNLS-RVEFY 317
           L+ LDLS N L     G L    ++ SL+ L L+        L    K LK+L   +E  
Sbjct: 83  LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 318 LCNFNGPIPTSMSDLSQ-------LVYLDMSFNHFSGP-----IPSLHMFRNLAYLDLSY 365
           +   N     S   L++       L  L+++ N             L    NL  LDL+ 
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202

Query: 366 NIFT---GGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVT 422
           N  T       +     L +L  ++L  NNL  +             L  A         
Sbjct: 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG---------AAALASA--------- 244

Query: 423 EISNASSSLLDTLDLSDNNLEGPIPLSF----FELKNLKILLLSSNKF 466
            + + + SLL TL LS N++             E ++L  L L  NKF
Sbjct: 245 -LLSPNISLL-TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 194 LSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAF 253
           L L    L G +   +S LR L  I L  N +   +P  L   ++L  L LS    +G+ 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 254 PEKILQLPTLETLDLSYNELLQGSLP 279
           PE + QL +L  L+L+ N  L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNS-LSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
           +L++LDL+ N+L  +   +      L++LDL  N      P        L  L L  NN 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 16 LLQMKSRLTFDSSVSFRMVQWSQSN-DCCTWSGVDCD 51
          LL  KS L  D S +     W+ S+ D C+W+GV CD
Sbjct: 8  LLAFKSSLNGDPSGALS--SWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.004
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 506 LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQIS 539
           L TL L++ +++ +P L     L  LDLS N+I+
Sbjct: 3   LETLDLSNNQITDLPPLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1005
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
PLN03150	623	hypothetical protein; Provisional	99.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
PLN03150	623	hypothetical protein; Provisional	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.01
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.85
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.68
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.25
KOG4341	483	consensus F-box protein containing LRR [General fu	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.17
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.16
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.02
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
PRK15386	426	type III secretion protein GogB; Provisional	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.62
KOG4341	483	consensus F-box protein containing LRR [General fu	97.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.41
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.36
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.04
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.32
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.15
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.86
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.31
KOG4308	478	consensus LRR-containing protein [Function unknown	93.7
KOG4308	478	consensus LRR-containing protein [Function unknown	93.15
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.9
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.06
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.67
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.75
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.21
smart00370	26	LRR Leucine-rich repeats, outliers.	88.21
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.45
smart00370	26	LRR Leucine-rich repeats, outliers.	85.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.4
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.64
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.14
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.56

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.4e-68  Score=672.92  Aligned_cols=584  Identities=37%  Similarity=0.605  Sum_probs=384.2

Q ss_pred             cHHHHHHHHHHhhhCCCCCCCcccccCCCCCCCCcccceeEECCCCCEEEEEcCCCCcccccCCCcccccccccceeecC
Q 047927            9 QSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLA   88 (1005)
Q Consensus         9 ~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls   88 (1005)
                      .++|++||++||+++. +|.  +.+++|+...+||.|.||+|+..++|+.|||+++.+.+.+  +..+..+++|++|+|+
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~--~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~--~~~~~~l~~L~~L~Ls  101 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPL--KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLS  101 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCc--ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccC--ChHHhCCCCCCEEECC
Confidence            5689999999999996 353  4788998788999999999987789999999999988766  6677778888888888


Q ss_pred             CccCCCCCCCCccc-CCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceee
Q 047927           89 FNMFNATEIPSGLG-NLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELY  167 (1005)
Q Consensus        89 ~~~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~  167 (1005)
                      +|.+.+. +|..+. .+++|++|++++|.+.+.+|.  +.++                                      
T Consensus       102 ~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~--------------------------------------  140 (968)
T PLN00113        102 NNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP--------------------------------------  140 (968)
T ss_pred             CCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccC--------------------------------------
Confidence            8777654 666544 677777777777777666653  2233                                      


Q ss_pred             cCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCC
Q 047927          168 LDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSC  247 (1005)
Q Consensus       168 l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n  247 (1005)
                                            +|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus       141 ----------------------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  198 (968)
T PLN00113        141 ----------------------NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN  198 (968)
T ss_pred             ----------------------CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence                                  3444444445555555666666666777777666666666666666666666666666


Q ss_pred             CCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCc
Q 047927          248 GLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPT  327 (1005)
Q Consensus       248 ~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~  327 (1005)
                      .+++.+|..++++++|++|++++|.+                        ++.+|..++++++|++|++++|.+.+.+|.
T Consensus       199 ~l~~~~p~~l~~l~~L~~L~L~~n~l------------------------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        199 QLVGQIPRELGQMKSLKWIYLGYNNL------------------------SGEIPYEIGGLTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             CCcCcCChHHcCcCCccEEECcCCcc------------------------CCcCChhHhcCCCCCEEECcCceeccccCh
Confidence            66666666666666666555555532                        334555555555666666655555555555


Q ss_pred             cCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCC
Q 047927          328 SMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMV  407 (1005)
Q Consensus       328 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  407 (1005)
                      .++++++|++|++++|.+.+.+                       |.. +..+++|++|++++|.+.+            
T Consensus       255 ~l~~l~~L~~L~L~~n~l~~~~-----------------------p~~-l~~l~~L~~L~Ls~n~l~~------------  298 (968)
T PLN00113        255 SLGNLKNLQYLFLYQNKLSGPI-----------------------PPS-IFSLQKLISLDLSDNSLSG------------  298 (968)
T ss_pred             hHhCCCCCCEEECcCCeeeccC-----------------------chh-HhhccCcCEEECcCCeecc------------
Confidence            5555555555555555443222                       211 3334444444444444333            


Q ss_pred             CEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEecc
Q 047927          408 QHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLS  487 (1005)
Q Consensus       408 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  487 (1005)
                                                           .+|..+..+++|+.|++++|.+.+.++. .             
T Consensus       299 -------------------------------------~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~-------------  327 (968)
T PLN00113        299 -------------------------------------EIPELVIQLQNLEILHLFSNNFTGKIPV-A-------------  327 (968)
T ss_pred             -------------------------------------CCChhHcCCCCCcEEECCCCccCCcCCh-h-------------
Confidence                                                 3333444445555555555544432221 1             


Q ss_pred             CCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCC
Q 047927          488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSL  567 (1005)
Q Consensus       488 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~  567 (1005)
                                                        +..+++|+.|++++|.+.+.+|..+..                   
T Consensus       328 ----------------------------------~~~l~~L~~L~L~~n~l~~~~p~~l~~-------------------  354 (968)
T PLN00113        328 ----------------------------------LTSLPRLQVLQLWSNKFSGEIPKNLGK-------------------  354 (968)
T ss_pred             ----------------------------------HhcCCCCCEEECcCCCCcCcCChHHhC-------------------
Confidence                                              122223334444444443333332211                   


Q ss_pred             CCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccC
Q 047927          568 EQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNAT  647 (1005)
Q Consensus       568 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  647 (1005)
                              +++|+.|++++|.+                                              ++.+|..++.++
T Consensus       355 --------~~~L~~L~Ls~n~l----------------------------------------------~~~~p~~~~~~~  380 (968)
T PLN00113        355 --------HNNLTVLDLSTNNL----------------------------------------------TGEIPEGLCSSG  380 (968)
T ss_pred             --------CCCCcEEECCCCee----------------------------------------------EeeCChhHhCcC
Confidence                    12333333333332                                              223344455555


Q ss_pred             CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927          648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD  727 (1005)
Q Consensus       648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  727 (1005)
                      +|+.|++++|++.+.+|..+..++                          +|+.|++++|++++.+|..+..+++|+.|+
T Consensus       381 ~L~~L~l~~n~l~~~~p~~~~~~~--------------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        381 NLFKLILFSNSLEGEIPKSLGACR--------------------------SLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             CCCEEECcCCEecccCCHHHhCCC--------------------------CCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence            566666666666655555555544                          444555555555555555555555555555


Q ss_pred             CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927          728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS  807 (1005)
Q Consensus       728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~  807 (1005)
                      +++|++++.+|.++..+++|+.|++++|++.+.+  |... ..++|+.||+++|++++.+|..+                
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~-~~~~L~~L~ls~n~l~~~~~~~~----------------  495 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSF-GSKRLENLDLSRNQFSGAVPRKL----------------  495 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeec--Cccc-ccccceEEECcCCccCCccChhh----------------
Confidence            5555555555555555555555555555555544  3322 34677888888888887777533                


Q ss_pred             hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh
Q 047927          808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL  887 (1005)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  887 (1005)
                                                       ..++.|+.|+|++|+++|.+|+.++++++|++|+|++|.++|.+|..
T Consensus       496 ---------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  542 (968)
T PLN00113        496 ---------------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS  542 (968)
T ss_pred             ---------------------------------hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence                                             13567889999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCCcccccccccccCCCCCCCCC
Q 047927          888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPP  956 (1005)
Q Consensus       888 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~  956 (1005)
                      ++++++|+.|||++|+++|.+|..+.++++|++||+++|+++|.+|..+++.++.+.+|.||+.+||++
T Consensus       543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.6e-54  Score=541.54  Aligned_cols=513  Identities=36%  Similarity=0.518  Sum_probs=398.4

Q ss_pred             CCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCC-CCCCCcEEECcCCcCccCCCcccccCcccEEECC
Q 047927          286 SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMS-DLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLS  364 (1005)
Q Consensus       286 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~  364 (1005)
                      +++.|++++|.+++..+..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|. ..+++|++|+++
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls  148 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLS  148 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECc
Confidence            455556666666666677777777777777777777776766543 677788888877777765553 335577777777


Q ss_pred             CCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCC
Q 047927          365 YNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEG  444 (1005)
Q Consensus       365 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  444 (1005)
                      +|.+++.+|.. ++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+                         .+
T Consensus       149 ~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-------------------------~~  202 (968)
T PLN00113        149 NNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL-------------------------VG  202 (968)
T ss_pred             CCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC-------------------------cC
Confidence            77777666655 67777777777777777777777777666666666655544                         34


Q ss_pred             CCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC-CC
Q 047927          445 PIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LR  523 (1005)
Q Consensus       445 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~  523 (1005)
                      .+|..+..+++|+.|++++|++.+.+| ..+..+++|++|++++|.+...                        +|. +.
T Consensus       203 ~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~------------------------~p~~l~  257 (968)
T PLN00113        203 QIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGP------------------------IPSSLG  257 (968)
T ss_pred             cCChHHcCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccc------------------------cChhHh
Confidence            555556666666666666666654444 3355555555555555544321                        121 55


Q ss_pred             CCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCccee
Q 047927          524 KQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYV  603 (1005)
Q Consensus       524 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  603 (1005)
                      .+++|++|++++|.+.+.+|..+..                           +++|++|++++|.+.+.+|.        
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~---------------------------l~~L~~L~Ls~n~l~~~~p~--------  302 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFS---------------------------LQKLISLDLSDNSLSGEIPE--------  302 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhh---------------------------ccCcCEEECcCCeeccCCCh--------
Confidence            5566677777777766666655432                           34566666666666554442        


Q ss_pred             eCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCC
Q 047927          604 DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRN  683 (1005)
Q Consensus       604 ~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n  683 (1005)
                                   .+. .++.|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+.  +|+.|++++|
T Consensus       303 -------------~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~--~L~~L~Ls~n  366 (968)
T PLN00113        303 -------------LVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN--NLTVLDLSTN  366 (968)
T ss_pred             -------------hHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC--CCcEEECCCC
Confidence                         222 356677777778888888888899999999999999999999999999887  8999999999


Q ss_pred             cCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCC
Q 047927          684 NLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISC  763 (1005)
Q Consensus       684 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~  763 (1005)
                      ++++..|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..|.++++|+.|++++|++++.+  
T Consensus       367 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--  444 (968)
T PLN00113        367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--  444 (968)
T ss_pred             eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999987  


Q ss_pred             CCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhc
Q 047927          764 PRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKIL  843 (1005)
Q Consensus       764 ~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  843 (1005)
                      |.....+++|+.|++++|++.|.+|..+                                                  ..
T Consensus       445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~--------------------------------------------------~~  474 (968)
T PLN00113        445 NSRKWDMPSLQMLSLARNKFFGGLPDSF--------------------------------------------------GS  474 (968)
T ss_pred             ChhhccCCCCcEEECcCceeeeecCccc--------------------------------------------------cc
Confidence            7788899999999999999999888532                                                  13


Q ss_pred             ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927          844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL  923 (1005)
Q Consensus       844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  923 (1005)
                      +.|+.||+++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|++|+|++|+++|.+|..++++++|+.||+
T Consensus       475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  554 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL  554 (968)
T ss_pred             ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccCCCCCc-ccccccccccCCCCCC
Q 047927          924 SYNHLVGRIPTSTQ-LQSFLATSFEGNDRLW  953 (1005)
Q Consensus       924 s~N~l~g~ip~~~~-~~~~~~~~~~gn~~lc  953 (1005)
                      ++|+++|.+|.... +..+......+|+..+
T Consensus       555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CCCcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999997532 2334444555665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.1e-38  Score=316.91  Aligned_cols=481  Identities=26%  Similarity=0.331  Sum_probs=335.2

Q ss_pred             CCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCC
Q 047927          329 MSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQ  408 (1005)
Q Consensus       329 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  408 (1005)
                      +..-.-|+.+.+++|.+....+....+..+.++++++|.++. .|.. ++.+..++.++.++|++. .+|+.+....++.
T Consensus        41 wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~-lp~a-ig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQ-LPAA-IGELEALKSLNVSHNKLS-ELPEQIGSLISLV  117 (565)
T ss_pred             hhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhh-CCHH-HHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence            334456777788888777766777777778888888887773 4444 677788888888888887 7788888888888


Q ss_pred             EEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccC
Q 047927          409 HLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSY  488 (1005)
Q Consensus       409 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~  488 (1005)
                      .++.+.|.+....+.+..  +..++.++..+|+++ ..|..+.++.++..+++.+|++. ..+++.+. ++.|++++...
T Consensus       118 ~l~~s~n~~~el~~~i~~--~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~  192 (565)
T KOG0472|consen  118 KLDCSSNELKELPDSIGR--LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNS  192 (565)
T ss_pred             hhhccccceeecCchHHH--Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccch
Confidence            888888877655554443  345777788888887 57778888889999999999887 66666555 88899999999


Q ss_pred             CeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCC
Q 047927          489 NRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLE  568 (1005)
Q Consensus       489 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~  568 (1005)
                      |.+..+|...  ....+|..|++++|+|..+|.|.+|..|++++++.|+|. .+|.....                    
T Consensus       193 N~L~tlP~~l--g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~--------------------  249 (565)
T KOG0472|consen  193 NLLETLPPEL--GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLK--------------------  249 (565)
T ss_pred             hhhhcCChhh--cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhc--------------------
Confidence            9888887652  445668888899999999999999999999999888887 66665432                    


Q ss_pred             CCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCC
Q 047927          569 QPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATN  648 (1005)
Q Consensus       569 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~  648 (1005)
                            +++++..||+++|++.                      +.|+.+. .+.+|++||+++|.++ ..|..++++ .
T Consensus       250 ------~L~~l~vLDLRdNklk----------------------e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-h  298 (565)
T KOG0472|consen  250 ------HLNSLLVLDLRDNKLK----------------------EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-H  298 (565)
T ss_pred             ------ccccceeeeccccccc----------------------cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-e
Confidence                  3455666666666665                      3344443 2455666666666666 456677888 8


Q ss_pred             CCeEEccCccccccCCchhhhcCc-ccccEEE-------CCCCcC----Ccc-ccCccC---CCCCccEEeCCCCeeccc
Q 047927          649 LLVLDLSYNYLSGMIPTCLINMSD-SQLGVLN-------LRRNNL----NGT-VSATFP---ANCSLRTLDLNGNQLEGM  712 (1005)
Q Consensus       649 L~~L~Ls~N~l~~~~p~~~~~l~~-~~L~~L~-------L~~n~l----~~~-~~~~~~---~l~~L~~L~L~~N~l~~~  712 (1005)
                      |+.|-+.+|.+.. +-..+.+... .-|++|.       ++.-.-    .+. .+..|.   .+.+.+.|++++-+++. 
T Consensus       299 L~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~-  376 (565)
T KOG0472|consen  299 LKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL-  376 (565)
T ss_pred             eeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc-
Confidence            8888888887752 2211111110 0011110       111000    000 111222   23467788888888884 


Q ss_pred             CcccccCCCC---CCEEECCCCcCCCCcchhhhcCCCCcE-EecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCC
Q 047927          713 VPKSLANCSV---LEILDLGNNQFDDTFPCWVKNASRLHV-LILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP  788 (1005)
Q Consensus       713 ~p~~l~~l~~---L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p  788 (1005)
                      +|+.......   .+..+++.|++. .+|..+..+..+.+ +.+++|.+ +.+  |..+..+++|..|++++|.+. .+|
T Consensus       377 VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv--~~~l~~l~kLt~L~L~NN~Ln-~LP  451 (565)
T KOG0472|consen  377 VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFV--PLELSQLQKLTFLDLSNNLLN-DLP  451 (565)
T ss_pred             CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccc--hHHHHhhhcceeeecccchhh-hcc
Confidence            4544333322   678888888887 46776666666655 44455544 334  777888888888888888765 556


Q ss_pred             hHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCC
Q 047927          789 QKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQ  868 (1005)
Q Consensus       789 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~  868 (1005)
                      .+.+                                                 .+..|+.||+|.|+|. .+|+.+..+.
T Consensus       452 ~e~~-------------------------------------------------~lv~Lq~LnlS~NrFr-~lP~~~y~lq  481 (565)
T KOG0472|consen  452 EEMG-------------------------------------------------SLVRLQTLNLSFNRFR-MLPECLYELQ  481 (565)
T ss_pred             hhhh-------------------------------------------------hhhhhheecccccccc-cchHHHhhHH
Confidence            5442                                                 2445788899999887 7888888888


Q ss_pred             CCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccc
Q 047927          869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV  929 (1005)
Q Consensus       869 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  929 (1005)
                      .++.+--++|++...-|+.+.+|++|..|||.+|.+. .||..++++++|+.|++++|++.
T Consensus       482 ~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  482 TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            8887777788888666666999999999999999998 78888999999999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-35  Score=308.54  Aligned_cols=367  Identities=30%  Similarity=0.369  Sum_probs=210.9

Q ss_pred             CcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCC
Q 047927          287 LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYN  366 (1005)
Q Consensus       287 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n  366 (1005)
                      -++|++++|++...-+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.++                    
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~--------------------  138 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS--------------------  138 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc--------------------
Confidence            344555555555555555556666666655555554 33433333334555555555443                    


Q ss_pred             cCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCC
Q 047927          367 IFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPI  446 (1005)
Q Consensus       367 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  446 (1005)
                          .+....++.++.|+.|||+.|.++..-...+..-.+++                         +|++++|.|+..-
T Consensus       139 ----sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~-------------------------~L~La~N~It~l~  189 (873)
T KOG4194|consen  139 ----SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK-------------------------KLNLASNRITTLE  189 (873)
T ss_pred             ----cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce-------------------------EEeeccccccccc
Confidence                22233355566666666666666522222233323333                         4444444444444


Q ss_pred             CccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC--CCC
Q 047927          447 PLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRK  524 (1005)
Q Consensus       447 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~--l~~  524 (1005)
                      ...|.++.+|..|.|+.|+++ .+|...|+.+++|+.|++..|++..+....|.+ .++|+.|.+..|++..+.+  |..
T Consensus       190 ~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqg-L~Sl~nlklqrN~I~kL~DG~Fy~  267 (873)
T KOG4194|consen  190 TGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQG-LPSLQNLKLQRNDISKLDDGAFYG  267 (873)
T ss_pred             cccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcC-chhhhhhhhhhcCcccccCcceee
Confidence            455666666666666666666 666666666666666666666666555444333 3345666666666665554  666


Q ss_pred             CCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceee
Q 047927          525 QTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVD  604 (1005)
Q Consensus       525 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  604 (1005)
                      +.++++|+|+.|+++..-..|++.                           +++|+.|++++|.+..             
T Consensus       268 l~kme~l~L~~N~l~~vn~g~lfg---------------------------Lt~L~~L~lS~NaI~r-------------  307 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQAVNEGWLFG---------------------------LTSLEQLDLSYNAIQR-------------  307 (873)
T ss_pred             ecccceeecccchhhhhhcccccc---------------------------cchhhhhccchhhhhe-------------
Confidence            677777777777777555555443                           3445555555555442             


Q ss_pred             CcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCc
Q 047927          605 YSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN  684 (1005)
Q Consensus       605 ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~  684 (1005)
                               |..+-+.+++.|++|++++|+++...+..|..+..|++|.|++|.++..--..|..++  +|++|||++|.
T Consensus       308 ---------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls--sL~~LdLr~N~  376 (873)
T KOG4194|consen  308 ---------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS--SLHKLDLRSNE  376 (873)
T ss_pred             ---------eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh--hhhhhcCcCCe
Confidence                     1112223445555555555555555566666666666666666666644444555555  66666666666


Q ss_pred             CCcccc---CccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcC
Q 047927          685 LNGTVS---ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF  757 (1005)
Q Consensus       685 l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  757 (1005)
                      ++..+.   ..|.++++|+.|++.+|++..+...+|.++..|+.|||.+|.|..+-|..|..+ .|++|.+..-.|
T Consensus       377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            665543   346667777777777777776666677777777777777777777777777776 666666655443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-34  Score=304.04  Aligned_cols=392  Identities=24%  Similarity=0.253  Sum_probs=285.3

Q ss_pred             CCEEEEEcCCCCcccccCCCcccccc--cccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCC
Q 047927           54 GRVIGLDLSEESISAGIDNSSSLFSL--KYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRL  131 (1005)
Q Consensus        54 ~~v~~L~L~~~~l~~~~~~~~~l~~l--~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L  131 (1005)
                      .+.+.||.++..+...-  ...+..+  ..-+.||+++|.+... -+..|.++++|+.+++.+|.+. .+|...+...+|
T Consensus        52 c~~~lldcs~~~lea~~--~~~l~g~lp~~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl  127 (873)
T KOG4194|consen   52 CNTRLLDCSDRELEAID--KSRLKGFLPSQTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHL  127 (873)
T ss_pred             CCceeeecCcccccccc--ccccCCcCccceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccce
Confidence            35666777776665311  1122221  2334577777776554 3455666777777777777665 666555555556


Q ss_pred             cEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccC
Q 047927          132 VTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSN  211 (1005)
Q Consensus       132 ~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~  211 (1005)
                      ++|+|.+|.|                                +....+.+..+    +.|+.|||+.|.++...-..|..
T Consensus       128 ~~L~L~~N~I--------------------------------~sv~se~L~~l----~alrslDLSrN~is~i~~~sfp~  171 (873)
T KOG4194|consen  128 EKLDLRHNLI--------------------------------SSVTSEELSAL----PALRSLDLSRNLISEIPKPSFPA  171 (873)
T ss_pred             eEEeeecccc--------------------------------ccccHHHHHhH----hhhhhhhhhhchhhcccCCCCCC
Confidence            6666666654                                33333333332    78889999999888877788888


Q ss_pred             CCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEE
Q 047927          212 LRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLI  291 (1005)
Q Consensus       212 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~  291 (1005)
                      -.++++|+|++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.......|.++++|+.|.
T Consensus       172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence            89999999999999888778899999999999999999977777888899999999999999888888999999999999


Q ss_pred             cccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCC-cccccCcccEEECCCCcCcC
Q 047927          292 LSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTG  370 (1005)
Q Consensus       292 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~  370 (1005)
                      |..|++...-...|..+.++++|++..|++...-..++.++++|+.|++++|.+...-. .|....+|++|+|++|.++.
T Consensus       252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence            99999998888889999999999999999998888889999999999999999876444 44444588888888888884


Q ss_pred             CCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccc
Q 047927          371 GISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSF  450 (1005)
Q Consensus       371 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  450 (1005)
                       +++..|..+..|++|.|++|+++..-...|..+.+|++|+++.|.+...+.+.                      ...|
T Consensus       332 -l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa----------------------a~~f  388 (873)
T KOG4194|consen  332 -LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA----------------------AVAF  388 (873)
T ss_pred             -CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc----------------------hhhh
Confidence             45555888888888888888887555555667777777777777766544331                      2234


Q ss_pred             cCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEc
Q 047927          451 FELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSL  511 (1005)
Q Consensus       451 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L  511 (1005)
                      ..+++|+.|.+.+|++. .|+..+|.++++|++|++.+|.+..+...+|...  .|++|.+
T Consensus       389 ~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m--~Lk~Lv~  446 (873)
T KOG4194|consen  389 NGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM--ELKELVM  446 (873)
T ss_pred             ccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc--hhhhhhh
Confidence            45566666666666665 5666666666666666666666666655554433  3555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.3e-37  Score=311.52  Aligned_cols=469  Identities=26%  Similarity=0.357  Sum_probs=324.3

Q ss_pred             ccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCC
Q 047927          233 LADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLS  312 (1005)
Q Consensus       233 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  312 (1005)
                      +.++..+.+|++++|++. ..|.+++.+..++.++.++|.+                        + .+|+.++.+.+|.
T Consensus        64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l------------------------s-~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL------------------------S-ELPEQIGSLISLV  117 (565)
T ss_pred             hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH------------------------h-hccHHHhhhhhhh
Confidence            445555666666666655 4555566555555555555543                        2 5566667777777


Q ss_pred             EEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCc
Q 047927          313 RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNN  392 (1005)
Q Consensus       313 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  392 (1005)
                      +++++.|.+. .+|+.++.+..|+.++..+|++...++++..+.++..+++.+|++.. .|...+ +++.|+++|..+|-
T Consensus       118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i-~m~~L~~ld~~~N~  194 (565)
T KOG0472|consen  118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA-LPENHI-AMKRLKHLDCNSNL  194 (565)
T ss_pred             hhhcccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhh-CCHHHH-HHHHHHhcccchhh
Confidence            7777777665 45556777777777777777777777777767777778888887774 333323 48888888888888


Q ss_pred             CCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccch
Q 047927          393 LGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIEL  472 (1005)
Q Consensus       393 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  472 (1005)
                      ++ .+|+.++.+.+|.-|++..|++.                          ..| .|..+..|+++.++.|++. .+|.
T Consensus       195 L~-tlP~~lg~l~~L~~LyL~~Nki~--------------------------~lP-ef~gcs~L~Elh~g~N~i~-~lpa  245 (565)
T KOG0472|consen  195 LE-TLPPELGGLESLELLYLRRNKIR--------------------------FLP-EFPGCSLLKELHVGENQIE-MLPA  245 (565)
T ss_pred             hh-cCChhhcchhhhHHHHhhhcccc--------------------------cCC-CCCccHHHHHHHhcccHHH-hhHH
Confidence            77 78888888877777777777654                          344 5777777778888777776 6777


Q ss_pred             hHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC-CCCCCceeEEECcCCcCCCCCChhhhhhcC
Q 047927          473 DAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGK  551 (1005)
Q Consensus       473 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~  551 (1005)
                      +...++.++.+||+..|+++.+|+.  .+...+|++|++++|.|+.+|. ++++ .|+.|-+.+|.+. .+-..+...+.
T Consensus       246 e~~~~L~~l~vLDLRdNklke~Pde--~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT  321 (565)
T KOG0472|consen  246 EHLKHLNSLLVLDLRDNKLKEVPDE--ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGT  321 (565)
T ss_pred             HHhcccccceeeeccccccccCchH--HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH-HHHHHHHcccH
Confidence            7777788888888888888777765  3555668888888888888887 8888 8899999999875 22222211111


Q ss_pred             -CcccEEeC--CCCcccCCCCCCccccCCcccEEEeccCcccccCCCC--CCCcceeeCcCCcCccCCCcchhcccC--c
Q 047927          552 -DSFNHLNL--SHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPL--PPNAAYVDYSGNNFTSSIPVDIGSFMS--L  624 (1005)
Q Consensus       552 -~~L~~L~L--~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~ls~n~~~~~~p~~~~~~~~--~  624 (1005)
                       .-+++|.=  ..-.++.-...       +-..-+    ...+.+|..  ..+.+.|+++.-+++ .+|+..|....  -
T Consensus       322 ~~vLKyLrs~~~~dglS~se~~-------~e~~~t----~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~  389 (565)
T KOG0472|consen  322 QEVLKYLRSKIKDDGLSQSEGG-------TETAMT----LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEI  389 (565)
T ss_pred             HHHHHHHHHhhccCCCCCCccc-------ccccCC----CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcc
Confidence             11222110  00000000000       000000    000111111  124566666666666 67776664322  3


Q ss_pred             eEEEEecCCcccccCChhhhccCCCCe-EEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEe
Q 047927          625 SIFFSFSKNSLTGVIPESICNATNLLV-LDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLD  703 (1005)
Q Consensus       625 L~~L~l~~n~l~~~~p~~l~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  703 (1005)
                      .+..++++|++. .+|..+..+..+.+ +++++|.+ +.+|..+..++  +|..|+|++|-+. .+|..++.+..||.|+
T Consensus       390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~--kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Ln  464 (565)
T KOG0472|consen  390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQ--KLTFLDLSNNLLN-DLPEEMGSLVRLQTLN  464 (565)
T ss_pred             eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhh--cceeeecccchhh-hcchhhhhhhhhheec
Confidence            677889999987 56777776666554 45555555 48898899888  8999999999887 4567777788899999


Q ss_pred             CCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcc
Q 047927          704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKF  783 (1005)
Q Consensus       704 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~  783 (1005)
                      ++.|++. .+|+.+..+..++.+-.++|++..+.|..+.++.+|.+|||.+|.+.. +  |..++++.+|+.|++++|+|
T Consensus       465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-I--Pp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  465 LSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-I--PPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             ccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-C--ChhhccccceeEEEecCCcc
Confidence            9999999 789999999999999999999999888889999999999999999874 3  89999999999999999999


Q ss_pred             c
Q 047927          784 S  784 (1005)
Q Consensus       784 ~  784 (1005)
                      .
T Consensus       541 r  541 (565)
T KOG0472|consen  541 R  541 (565)
T ss_pred             C
Confidence            8

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2e-34  Score=320.17  Aligned_cols=507  Identities=27%  Similarity=0.346  Sum_probs=280.0

Q ss_pred             EEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCcc
Q 047927          242 LYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNF  321 (1005)
Q Consensus       242 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~  321 (1005)
                      +|++.+.+. .+|..+..-..++.|+++.|.....+.+...+.-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            455555555 55665555555777777777655444444444445666666666654 5566666666777777766665


Q ss_pred             CCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccC
Q 047927          322 NGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSL  401 (1005)
Q Consensus       322 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  401 (1005)
                      . ..|....++.+|+++.|.+|.+...+..                         +..+++|++|+++.|.+. .+|..+
T Consensus        81 ~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~-------------------------~~~lknl~~LdlS~N~f~-~~Pl~i  133 (1081)
T KOG0618|consen   81 R-SVPSSCSNMRNLQYLNLKNNRLQSLPAS-------------------------ISELKNLQYLDLSFNHFG-PIPLVI  133 (1081)
T ss_pred             h-hCchhhhhhhcchhheeccchhhcCchh-------------------------HHhhhcccccccchhccC-CCchhH
Confidence            5 3445566666666666666665533333                         444555555555555554 455555


Q ss_pred             CCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCC
Q 047927          402 FELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNL  481 (1005)
Q Consensus       402 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  481 (1005)
                      ..+..+..+..++|...   .....   ..++.+++..|.+.+.++..+..++.  .|+|++|.+. .   ..+..+.+|
T Consensus       134 ~~lt~~~~~~~s~N~~~---~~lg~---~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l  201 (1081)
T KOG0618|consen  134 EVLTAEEELAASNNEKI---QRLGQ---TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANL  201 (1081)
T ss_pred             HhhhHHHHHhhhcchhh---hhhcc---ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccch
Confidence            55555555555555111   11111   11566677777777777666666665  6888888875 2   346778888


Q ss_pred             CeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCC
Q 047927          482 FRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSH  561 (1005)
Q Consensus       482 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~  561 (1005)
                      +.+....|++..+....     ++++.|+..+|.++.+..-....+|+.++++.|+++ .+|+|+.              
T Consensus       202 ~~l~c~rn~ls~l~~~g-----~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~--------------  261 (1081)
T KOG0618|consen  202 EVLHCERNQLSELEISG-----PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIG--------------  261 (1081)
T ss_pred             hhhhhhhcccceEEecC-----cchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHH--------------
Confidence            88888888877655321     335555555555553322222335555555555555 3444443              


Q ss_pred             CcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCCh
Q 047927          562 NLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPE  641 (1005)
Q Consensus       562 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~  641 (1005)
                                   .|.+|+.++..+|++.                      .+|..++ ..++|+++.+..|.+. .+|.
T Consensus       262 -------------~~~nle~l~~n~N~l~----------------------~lp~ri~-~~~~L~~l~~~~nel~-yip~  304 (1081)
T KOG0618|consen  262 -------------ACANLEALNANHNRLV----------------------ALPLRIS-RITSLVSLSAAYNELE-YIPP  304 (1081)
T ss_pred             -------------hcccceEecccchhHH----------------------hhHHHHh-hhhhHHHHHhhhhhhh-hCCC
Confidence                         3345555555555553                      1122222 1333444444444444 3444


Q ss_pred             hhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCC
Q 047927          642 SICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCS  721 (1005)
Q Consensus       642 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  721 (1005)
                      .....++|++|||..|++. ..|+.+......+|..|+.+.|++.....-.-...+.|+.|++.+|.++...-..+.+..
T Consensus       305 ~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~  383 (1081)
T KOG0618|consen  305 FLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK  383 (1081)
T ss_pred             cccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence            5555666666666666665 444433332222355555555655544322223344556666666666655444555555


Q ss_pred             CCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhc
Q 047927          722 VLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVD  801 (1005)
Q Consensus       722 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~  801 (1005)
                      +|+.|+|++|++.......+.++..|+.|+|+||+++.                           +|.+..         
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~---------------------------Lp~tva---------  427 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT---------------------------LPDTVA---------  427 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh---------------------------hhHHHH---------
Confidence            66666666666554333445555555555555555432                           221111         


Q ss_pred             cCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCc
Q 047927          802 EGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALT  881 (1005)
Q Consensus       802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~  881 (1005)
                                                              .+..|..|...+|++. ..| ++..++.|+++|+|+|+|+
T Consensus       428 ----------------------------------------~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  428 ----------------------------------------NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             ----------------------------------------hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence                                                    2233444555555555 455 6777888888888888877


Q ss_pred             c-cCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCC
Q 047927          882 G-SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN  926 (1005)
Q Consensus       882 g-~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  926 (1005)
                      - .+|... .-++|++|||++|.=...--..|..+..+..+++.-|
T Consensus       466 ~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  466 EVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            4 333332 2278888888888743344455666677777777766

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=3.9e-32  Score=302.01  Aligned_cols=417  Identities=27%  Similarity=0.279  Sum_probs=250.3

Q ss_pred             CCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcc
Q 047927          214 SLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS  293 (1005)
Q Consensus       214 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~  293 (1005)
                      .++.|+++.|.+....-+.+.+.-+|+.|++++|.+. .+|..+..+.+|+.|.++.|.+...+ .....+.+|+++.|.
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp-~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP-SSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc-hhhhhhhcchhheec
Confidence            3555566555443322223333344666777666665 56666666667777777766654433 334446667777776


Q ss_pred             cccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCC
Q 047927          294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGIS  373 (1005)
Q Consensus       294 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~  373 (1005)
                      +|.+. ..|..+..+++|+.|+++.|.+. .+|..+..+..+..+..++|......+.    ..++.+++..|.+.+.+.
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~ik~~~l~~n~l~~~~~  173 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ----TSIKKLDLRLNVLGGSFL  173 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc----ccchhhhhhhhhcccchh
Confidence            66655 66777777777777887777775 5666677777777777777722111111    126666666666666555


Q ss_pred             cccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCc
Q 047927          374 SIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFEL  453 (1005)
Q Consensus       374 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l  453 (1005)
                      .. +..++.  .+++++|.+.   ...+..++.|+.+....|++....     ..-++++.|+.++|.++...+.  ..-
T Consensus       174 ~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~~~--p~p  240 (1081)
T KOG0618|consen  174 ID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLDVH--PVP  240 (1081)
T ss_pred             cc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcceeeccc--ccc
Confidence            44 444444  5777777765   234556666677666666554211     1234577888888877732221  123


Q ss_pred             CCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC-CCCCCceeEEE
Q 047927          454 KNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLD  532 (1005)
Q Consensus       454 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~~l~~L~~L~  532 (1005)
                      .+|+.++++.|+++ .+| +++..+.+|+.++..+|.+..++...+  ...+|+.|.+..|.+..+|. +...+.|+.|+
T Consensus       241 ~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~sL~tLd  316 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKSLRTLD  316 (1081)
T ss_pred             ccceeeecchhhhh-cch-HHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence            57888888888887 566 778888888888888888866654432  23458888999999999988 66799999999


Q ss_pred             CcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCC---CCCCcceeeCcCCc
Q 047927          533 LSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP---LPPNAAYVDYSGNN  609 (1005)
Q Consensus       533 Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~ls~n~  609 (1005)
                      |..|++. ..|+.+......++..++.+.|++...+.. .-...+.|+.|.+.+|.++....+   ....++.|++++|+
T Consensus       317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~-~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSY-EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccc-cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            9999997 777777666666677888888887776421 112235567777777777654322   12234444444444


Q ss_pred             CccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccc
Q 047927          610 FTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYL  659 (1005)
Q Consensus       610 ~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  659 (1005)
                      +. ++|......+..|+.|++|+|+++ .+|..+..+..|++|...+|++
T Consensus       395 L~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  395 LN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL  442 (1081)
T ss_pred             cc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce
Confidence            33 333333333333333333333333 2233333333333333333333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=8.8e-32  Score=284.77  Aligned_cols=362  Identities=25%  Similarity=0.374  Sum_probs=205.0

Q ss_pred             cCCEEeCCCCccC-CCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceE
Q 047927          431 LLDTLDLSDNNLE-GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTL  509 (1005)
Q Consensus       431 ~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  509 (1005)
                      -.+-+|+++|.++ +..|..+..+++++.|.|...++. .+| +.++.+.+|++|.+++|++..+.+.            
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~~vhGE------------   73 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLISVHGE------------   73 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhHhhhhh------------
Confidence            3455677777777 457888888999999999998886 555 5688888888888888888766543            


Q ss_pred             EcCCccCcCCCCCCCCCceeEEECcCCcCCC-CCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCc
Q 047927          510 SLASCKLSAIPNLRKQTKLYHLDLSDNQISG-EIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQ  588 (1005)
Q Consensus       510 ~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  588 (1005)
                                  +..++.|+.+++..|++.. -+|..++.+  ..|..||||+|+++..+.  .+..-.++-+|++++|+
T Consensus        74 ------------Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l--~dLt~lDLShNqL~EvP~--~LE~AKn~iVLNLS~N~  137 (1255)
T KOG0444|consen   74 ------------LSDLPRLRSVIVRDNNLKNSGIPTDIFRL--KDLTILDLSHNQLREVPT--NLEYAKNSIVLNLSYNN  137 (1255)
T ss_pred             ------------hccchhhHHHhhhccccccCCCCchhccc--ccceeeecchhhhhhcch--hhhhhcCcEEEEcccCc
Confidence                        4444555555555555432 234444332  234444444444444322  12222455556666666


Q ss_pred             ccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhh
Q 047927          589 IQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLI  668 (1005)
Q Consensus       589 l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  668 (1005)
                      +.                      .||..++-.++.|-+|++++|++. .+|+.+..+..|++|+|++|.+.        
T Consensus       138 Ie----------------------tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~--------  186 (1255)
T KOG0444|consen  138 IE----------------------TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN--------  186 (1255)
T ss_pred             cc----------------------cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh--------
Confidence            54                      344444444445555555555554 44555566666666666666554        


Q ss_pred             hcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec-ccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCC
Q 047927          669 NMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE-GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRL  747 (1005)
Q Consensus       669 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  747 (1005)
                                        -.--..++.+++|+.|++++.+-+ .-+|.++..+.+|..+|+|.|.+. ..|+.+-++.+|
T Consensus       187 ------------------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L  247 (1255)
T KOG0444|consen  187 ------------------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL  247 (1255)
T ss_pred             ------------------HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh
Confidence                              222223334444444554444322 124444555555555555555544 345555555555


Q ss_pred             cEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheeccccccccccc
Q 047927          748 HVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDA  827 (1005)
Q Consensus       748 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (1005)
                      +.|+|++|+++..   ....+.+.+|+.|++|+|+++ .+|....                                   
T Consensus       248 rrLNLS~N~iteL---~~~~~~W~~lEtLNlSrNQLt-~LP~avc-----------------------------------  288 (1255)
T KOG0444|consen  248 RRLNLSGNKITEL---NMTEGEWENLETLNLSRNQLT-VLPDAVC-----------------------------------  288 (1255)
T ss_pred             heeccCcCceeee---eccHHHHhhhhhhccccchhc-cchHHHh-----------------------------------
Confidence            5555555554421   223334445555555555554 2332221                                   


Q ss_pred             EEEEEcchHHHHHHhcccceEEECCCCeee-ccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcc
Q 047927          828 ITVTIKGLEMKLAKILNIFTSIDFSRNNFE-GPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG  906 (1005)
Q Consensus       828 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~  906 (1005)
                                    .++.|+.|.+.+|+++ .-||..||.|..|+++..++|.+. ..|+.+..+..|+.|.|++|++- 
T Consensus       289 --------------KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-  352 (1255)
T KOG0444|consen  289 --------------KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-  352 (1255)
T ss_pred             --------------hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-
Confidence                          1233344444444443 236777777777777777777777 67777777777777777777776 


Q ss_pred             cCcccccCCCCCCeEEccCCc
Q 047927          907 TIPAQLASLNFLSVLNLSYNH  927 (1005)
Q Consensus       907 ~ip~~l~~l~~L~~L~ls~N~  927 (1005)
                      ..|+.+.-|+.|++||+..|+
T Consensus       353 TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  353 TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             echhhhhhcCCcceeeccCCc
Confidence            567777777777777777774

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=7e-31  Score=277.99  Aligned_cols=368  Identities=26%  Similarity=0.358  Sum_probs=237.7

Q ss_pred             cccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhh
Q 047927           78 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLL  157 (1005)
Q Consensus        78 ~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l  157 (1005)
                      -++..|-.|+++|.++|..+|+.+..++.++.|.|...++. .+|..++.|.+|+||.+++|++..+         .+.+
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v---------hGEL   74 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV---------HGEL   74 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh---------hhhh
Confidence            35566777777788877778888888888888888888775 7888888888888888888876443         3447


Q ss_pred             hcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCC
Q 047927          158 QNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFS  237 (1005)
Q Consensus       158 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~  237 (1005)
                      ..++.|+.+.++.|++...++.  ..+..+ ..|+.|||++|++. +.|..+..-+++-+|+|++|++.......|.+++
T Consensus        75 s~Lp~LRsv~~R~N~LKnsGiP--~diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt  150 (1255)
T KOG0444|consen   75 SDLPRLRSVIVRDNNLKNSGIP--TDIFRL-KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT  150 (1255)
T ss_pred             ccchhhHHHhhhccccccCCCC--chhccc-ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence            7777888888877766544332  123333 67888888888877 4677788888888888888888665555677788


Q ss_pred             CCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEccccccc-ccCchhhccCCCCCEEee
Q 047927          238 NLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFS-GILPDSIKNLKNLSRVEF  316 (1005)
Q Consensus       238 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l  316 (1005)
                      .|-.|||++|++. .+|+.+..+.+|++|+|++|++....+..+..+++|++|.+++.+-+ ..+|.++..+.+|..+++
T Consensus       151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl  229 (1255)
T KOG0444|consen  151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL  229 (1255)
T ss_pred             hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence            8888888888887 66777888888888888888776555556666667777777766543 345666666666666666


Q ss_pred             cCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCc
Q 047927          317 YLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGS  396 (1005)
Q Consensus       317 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  396 (1005)
                      +.|++. ..|+.+.++++|+.|++++|.++..--.                         .+...+|+.|+++.|+++ .
T Consensus       230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~-------------------------~~~W~~lEtLNlSrNQLt-~  282 (1255)
T KOG0444|consen  230 SENNLP-IVPECLYKLRNLRRLNLSGNKITELNMT-------------------------EGEWENLETLNLSRNQLT-V  282 (1255)
T ss_pred             cccCCC-cchHHHhhhhhhheeccCcCceeeeecc-------------------------HHHHhhhhhhccccchhc-c
Confidence            666655 4566666666666666666666532221                         223345555555666555 5


Q ss_pred             cCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHH
Q 047927          397 IPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQ  476 (1005)
Q Consensus       397 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~  476 (1005)
                      +|..+..+++|+.|...+|+++-.........+..|+.+..++|.+. ..|..++.|..|+.|.|+.|++. ++| +++.
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLP-eaIH  359 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLP-EAIH  359 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ech-hhhh
Confidence            56666666666666666655442211111112233344444444443 45555555555555555555554 333 3455


Q ss_pred             hcCCCCeEeccCCe
Q 047927          477 RLRNLFRLDLSYNR  490 (1005)
Q Consensus       477 ~l~~L~~L~l~~n~  490 (1005)
                      -++.|+.||+..|.
T Consensus       360 lL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  360 LLPDLKVLDLRENP  373 (1255)
T ss_pred             hcCCcceeeccCCc
Confidence            55555555555553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.3e-27  Score=241.40  Aligned_cols=132  Identities=27%  Similarity=0.299  Sum_probs=94.3

Q ss_pred             cccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccC-CeeeEecCCcccccCcccc
Q 047927          429 SSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSY-NRLAVVAGSSVYCFPPLLT  507 (1005)
Q Consensus       429 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~  507 (1005)
                      ++...+++|..|.|+...+.+|..+++|+.|+|++|.|+ .|.+++|+++++|.+|.+.+ |+|+.++...|.. ...++
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-L~slq  143 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-LSSLQ  143 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-HHHHH
Confidence            455677888888888777888888888888888888887 77888888888888777766 7888887766443 34477


Q ss_pred             eEEcCCccCcCCCC--CCCCCceeEEECcCCcCCCCCCh-hhhhhcCCcccEEeCCCCccc
Q 047927          508 TLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPN-WLWKIGKDSFNHLNLSHNLLV  565 (1005)
Q Consensus       508 ~L~L~~n~l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~~~L~~L~L~~n~l~  565 (1005)
                      .|.+.-|++..++.  +..++++..|.+.+|.+. .++. .+.  +..+++.+.+..|.+.
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~--~l~~i~tlhlA~np~i  201 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQ--GLAAIKTLHLAQNPFI  201 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhcccccc--chhccchHhhhcCccc
Confidence            77777777777765  777778888888887776 3333 222  2344556666655543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-25  Score=227.64  Aligned_cols=416  Identities=24%  Similarity=0.279  Sum_probs=258.3

Q ss_pred             eCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCcc
Q 047927          436 DLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCK  515 (1005)
Q Consensus       436 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~  515 (1005)
                      +-++-.++ .+|..+.  +.-..+.|..|+|+ .+|..+|+.+++|++|+|++|.|+.+...+|.+....++-+...+|+
T Consensus        52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   52 DCRGKGLT-EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             EccCCCcc-cCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            33333444 4555443  45678999999998 89999999999999999999999999999887776655555666699


Q ss_pred             CcCCCC--CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccC
Q 047927          516 LSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKI  593 (1005)
Q Consensus       516 l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  593 (1005)
                      |+++|.  |.++..|+.|.+.-|++...-.+.++++  +++..|.+..|.+..+... .+..+..++.+.+..|++... 
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL--~~l~lLslyDn~~q~i~~~-tf~~l~~i~tlhlA~np~icd-  203 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDL--PSLSLLSLYDNKIQSICKG-TFQGLAAIKTLHLAQNPFICD-  203 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHh--hhcchhcccchhhhhhccc-cccchhccchHhhhcCccccc-
Confidence            999998  9999999999999999998777777765  5578888888888877543 466677888888888775311 


Q ss_pred             CCCCCCccee--eCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhc-cCCCCeEEccCccccccCC-chhhh
Q 047927          594 PPLPPNAAYV--DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICN-ATNLLVLDLSYNYLSGMIP-TCLIN  669 (1005)
Q Consensus       594 ~~~~~~l~~L--~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p-~~~~~  669 (1005)
                          .+++.+  ++..+      |..++ .........+.+.++...-+..|.. +..+..-..+.+...+..| .+|..
T Consensus       204 ----CnL~wla~~~a~~------~iets-garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~  272 (498)
T KOG4237|consen  204 ----CNLPWLADDLAMN------PIETS-GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK  272 (498)
T ss_pred             ----cccchhhhHHhhc------hhhcc-cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence                111111  00111      11110 1111122223333333232222221 1122221222332333333 45666


Q ss_pred             cCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcE
Q 047927          670 MSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHV  749 (1005)
Q Consensus       670 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  749 (1005)
                      ++  +|+.|+|++|+++++.+.+|.+..++++|+|..|++..+....|.++..|+.|+|.+|+|+...|..|..+.+|.+
T Consensus       273 L~--~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  273 LP--NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             cc--cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            76  7888888888888887888888888888888888887776777778888888888888888777777777777777


Q ss_pred             EecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCC-------------------------
Q 047927          750 LILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGR-------------------------  804 (1005)
Q Consensus       750 L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~-------------------------  804 (1005)
                      |+|-+|.+....                          --.|+..|-.-......                         
T Consensus       351 l~l~~Np~~CnC--------------------------~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~  404 (498)
T KOG4237|consen  351 LNLLSNPFNCNC--------------------------RLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG  404 (498)
T ss_pred             eehccCcccCcc--------------------------chHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC
Confidence            777777765432                          22333333111000000                         


Q ss_pred             chhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccC
Q 047927          805 SQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSI  884 (1005)
Q Consensus       805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~i  884 (1005)
                      ..++..+.+....+.+.......+.                     -|++.+. .+|..+-  ...++|++.+|.++ .+
T Consensus       405 ~~ee~~~~~s~~cP~~c~c~~tVvR---------------------cSnk~lk-~lp~~iP--~d~telyl~gn~~~-~v  459 (498)
T KOG4237|consen  405 GPEELGCLTSSPCPPPCTCLDTVVR---------------------CSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SV  459 (498)
T ss_pred             CccccCCCCCCCCCCCcchhhhhHh---------------------hcccchh-hcCCCCC--chhHHHhcccchhc-cc
Confidence            0011111111111111111111112                     2333332 3443332  34566778888887 67


Q ss_pred             chhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCC
Q 047927          885 PSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN  926 (1005)
Q Consensus       885 p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  926 (1005)
                      |.+  .+++| .+|||+|+++..--..|.++++|.+|-+|||
T Consensus       460 p~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  460 PDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            776  66777 7888888887766777888888888888876

>PLN03210 Resistant to P

Probab=99.87  E-value=6.1e-21  Score=240.86  Aligned_cols=341  Identities=19%  Similarity=0.247  Sum_probs=221.3

Q ss_pred             cchhHHHhcCCCCeEeccCCeee------EecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCC
Q 047927          470 IELDAIQRLRNLFRLDLSYNRLA------VVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP  543 (1005)
Q Consensus       470 ~~~~~l~~l~~L~~L~l~~n~l~------~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p  543 (1005)
                      +...+|.++++|+.|.+..+...      ......+..+++.|+.|.+.++.++.+|.-....+|++|++++|++. .++
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence            45567888888888888655321      11112334455667777777777777776335567777777777765 333


Q ss_pred             hhhhhhcCCcccEEeCCCCc-ccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhccc
Q 047927          544 NWLWKIGKDSFNHLNLSHNL-LVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFM  622 (1005)
Q Consensus       544 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~  622 (1005)
                      ..+.  ....|+.++++++. +..++   .+..+++|+.|++++|.                     ....+|..+. .+
T Consensus       628 ~~~~--~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~---------------------~L~~lp~si~-~L  680 (1153)
T PLN03210        628 DGVH--SLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCS---------------------SLVELPSSIQ-YL  680 (1153)
T ss_pred             cccc--cCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCC---------------------Cccccchhhh-cc
Confidence            3221  22344555554432 22222   13334444444444443                     3334454444 36


Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL  702 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  702 (1005)
                      ..|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..   ..  +|+.|++++|.+.. +|..+ .+++|++|
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~--nL~~L~L~~n~i~~-lP~~~-~l~~L~~L  752 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---ST--NISWLDLDETAIEE-FPSNL-RLENLDEL  752 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cC--CcCeeecCCCcccc-ccccc-cccccccc
Confidence            778888888876666777665 6888888888888765555543   12  78888888888764 34433 46778888


Q ss_pred             eCCCCeec-------ccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccE
Q 047927          703 DLNGNQLE-------GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQI  775 (1005)
Q Consensus       703 ~L~~N~l~-------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  775 (1005)
                      ++.++...       ...+..+...++|+.|++++|+..+.+|.+++++++|+.|++++|...+.+  |... .+++|+.
T Consensus       753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~  829 (1153)
T PLN03210        753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLES  829 (1153)
T ss_pred             cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCE
Confidence            88764422       112222334568888888888877788888888888888888887655554  5544 6788888


Q ss_pred             EEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCe
Q 047927          776 IDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNN  855 (1005)
Q Consensus       776 L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~  855 (1005)
                      |++++|.....+|.                                                    ..++++.|+|++|.
T Consensus       830 L~Ls~c~~L~~~p~----------------------------------------------------~~~nL~~L~Ls~n~  857 (1153)
T PLN03210        830 LDLSGCSRLRTFPD----------------------------------------------------ISTNISDLNLSRTG  857 (1153)
T ss_pred             EECCCCCccccccc----------------------------------------------------cccccCEeECCCCC
Confidence            88888765444442                                                    13457788888888


Q ss_pred             eeccCcccccCCCCCCEEECCC-CcCcccCchhhhcCCCCCEEeCCCCc
Q 047927          856 FEGPIPEEMGLLQSLCALNLSH-NALTGSIPSLIGNLREIESLDLSMNN  903 (1005)
Q Consensus       856 l~g~ip~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~l~~L~~LdLs~N~  903 (1005)
                      ++ .+|..++.+++|++|+|++ |+++ .+|..+..+++|+.|++++|.
T Consensus       858 i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        858 IE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             Cc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence            87 5788888888888888887 4455 577778888888888888874

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=2.7e-21  Score=224.74  Aligned_cols=262  Identities=27%  Similarity=0.296  Sum_probs=158.2

Q ss_pred             ccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCC
Q 047927          554 FNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKN  633 (1005)
Q Consensus       554 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n  633 (1005)
                      -..|+++.+.++.++...  .  ++|+.|++.+|+++. +|..+                         +.|++|++++|
T Consensus       203 ~~~LdLs~~~LtsLP~~l--~--~~L~~L~L~~N~Lt~-LP~lp-------------------------~~Lk~LdLs~N  252 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCL--P--AHITTLVIPDNNLTS-LPALP-------------------------PELRTLEVSGN  252 (788)
T ss_pred             CcEEEcCCCCCCcCCcch--h--cCCCEEEccCCcCCC-CCCCC-------------------------CCCcEEEecCC
Confidence            445566666665554321  1  245566666665552 34333                         44555555555


Q ss_pred             cccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccC
Q 047927          634 SLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMV  713 (1005)
Q Consensus       634 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  713 (1005)
                      +++. +|..   .++|+.|++++|.++ .+|...   .  +|+.|++++|+++.. |.   ..++|+.|++++|++++ +
T Consensus       253 ~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~--~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-L  317 (788)
T PRK15387        253 QLTS-LPVL---PPGLLELSIFSNPLT-HLPALP---S--GLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-L  317 (788)
T ss_pred             ccCc-ccCc---ccccceeeccCCchh-hhhhch---h--hcCEEECcCCccccc-cc---cccccceeECCCCcccc-C
Confidence            5553 2322   345666666666665 333321   1  566666666666643 22   12456677777776664 3


Q ss_pred             cccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHh
Q 047927          714 PKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLL  793 (1005)
Q Consensus       714 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~  793 (1005)
                      |..   ..+|+.|++++|++++ +|..   ..+|+.|+|++|++++.   |..   .++|+.|++++|++++ +|.    
T Consensus       318 p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N~L~~-LP~----  379 (788)
T PRK15387        318 PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLTS-LPA----  379 (788)
T ss_pred             CCC---cccccccccccCcccc-cccc---ccccceEecCCCccCCC---CCC---Ccccceehhhcccccc-Ccc----
Confidence            332   1346666677777664 3431   13566777777776642   322   2456667777777663 442    


Q ss_pred             hhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEE
Q 047927          794 NLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCAL  873 (1005)
Q Consensus       794 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L  873 (1005)
                                                                      ....|+.|++++|+|++ +|...   ++|+.|
T Consensus       380 ------------------------------------------------l~~~L~~LdLs~N~Lt~-LP~l~---s~L~~L  407 (788)
T PRK15387        380 ------------------------------------------------LPSGLKELIVSGNRLTS-LPVLP---SELKEL  407 (788)
T ss_pred             ------------------------------------------------cccccceEEecCCcccC-CCCcc---cCCCEE
Confidence                                                            12346778888888884 56433   568888


Q ss_pred             ECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCC
Q 047927          874 NLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTS  935 (1005)
Q Consensus       874 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  935 (1005)
                      ++++|+|++ +|...   .+|+.|+|++|+|+ .+|..+.+++.|+.|+|++|+|+|.+|..
T Consensus       408 dLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        408 MVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             EccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            888888884 67543   46778888888887 67888888888888888888888887753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=3.1e-21  Score=224.24  Aligned_cols=66  Identities=23%  Similarity=0.286  Sum_probs=48.1

Q ss_pred             cceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCC
Q 047927          845 IFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL  915 (1005)
Q Consensus       845 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l  915 (1005)
                      .|+.|++++|++++ +|...   .+|+.|+|++|+|+ .+|..++++++|+.|+|++|.|+|.+|..+..+
T Consensus       403 ~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             CCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            45677777777774 56532   45677888888887 678888888888888888888888877776443

>PLN03210 Resistant to P

Probab=99.86  E-value=2.7e-20  Score=235.08  Aligned_cols=338  Identities=22%  Similarity=0.219  Sum_probs=254.4

Q ss_pred             CccccCcCCCcEEECCCCcc------eeccchhHHHhc-CCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCC
Q 047927          447 PLSFFELKNLKILLLSSNKF------VGTIELDAIQRL-RNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAI  519 (1005)
Q Consensus       447 ~~~l~~l~~L~~L~L~~n~l------~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l  519 (1005)
                      +.+|..+++|+.|.+..+..      ...+| ..+..+ .+|+.|++.++.+..++...   .+.+|+.|++.+|++..+
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcCcccccc
Confidence            45677888899888866532      22233 345555 46899999998888877543   356799999999999888


Q ss_pred             CC-CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCc-ccCCCCCCccccCCcccEEEeccCcccccCCCCC
Q 047927          520 PN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNL-LVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP  597 (1005)
Q Consensus       520 ~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  597 (1005)
                      +. +..+++|+.|+++++.....+|. +.  ....|+.|++++|. +..++  ..+..+++|+.|++++|...+.+|.  
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls--~l~~Le~L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~Lp~--  699 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LS--MATNLETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEILPT--  699 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCc-cc--cCCcccEEEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCccCC--
Confidence            76 88889999999998876567774 22  34679999999874 44443  3467788999999988776554442  


Q ss_pred             CCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccE
Q 047927          598 PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGV  677 (1005)
Q Consensus       598 ~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~  677 (1005)
                                         .+  .+++|+.|++++|...+.+|..   .++|+.|++++|.+. .+|..+ .+.  +|+.
T Consensus       700 -------------------~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~--~L~~  751 (1153)
T PLN03210        700 -------------------GI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLE--NLDE  751 (1153)
T ss_pred             -------------------cC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccc--cccc
Confidence                               22  3678899999999877677653   568999999999987 677655 345  8888


Q ss_pred             EECCCCcCC-------ccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEE
Q 047927          678 LNLRRNNLN-------GTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVL  750 (1005)
Q Consensus       678 L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  750 (1005)
                      |++.++...       ...+..+...++|+.|+|++|...+.+|.+++++++|+.|++++|...+.+|..+ ++++|+.|
T Consensus       752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L  830 (1153)
T PLN03210        752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL  830 (1153)
T ss_pred             ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE
Confidence            988875422       2222233345789999999999888899999999999999999997666788776 79999999


Q ss_pred             ecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEE
Q 047927          751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITV  830 (1005)
Q Consensus       751 ~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (1005)
                      ++++|.....+  |.   ..++|+.|++++|.+. .+|..+                                       
T Consensus       831 ~Ls~c~~L~~~--p~---~~~nL~~L~Ls~n~i~-~iP~si---------------------------------------  865 (1153)
T PLN03210        831 DLSGCSRLRTF--PD---ISTNISDLNLSRTGIE-EVPWWI---------------------------------------  865 (1153)
T ss_pred             ECCCCCccccc--cc---cccccCEeECCCCCCc-cChHHH---------------------------------------
Confidence            99998755443  33   2468999999999987 456422                                       


Q ss_pred             EEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCc
Q 047927          831 TIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNA  879 (1005)
Q Consensus       831 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~  879 (1005)
                                ..+++|+.|+|++|+--..+|..+..+++|+.++++++.
T Consensus       866 ----------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        866 ----------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ----------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence                      146788999999855444688899999999999999885

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=4.1e-19  Score=208.47  Aligned_cols=205  Identities=25%  Similarity=0.402  Sum_probs=111.4

Q ss_pred             CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927          648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD  727 (1005)
Q Consensus       648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  727 (1005)
                      +|+.|++++|+++ .+|..+..    +|+.|+|++|.+.. +|..+.  .+|++|++++|+++ .+|..+.  ++|+.|+
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~~----~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~  289 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLPD----TIQEMELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLS  289 (754)
T ss_pred             CCCEEECCCCccc-cCChhhhc----cccEEECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence            4555555555554 33433321    45555555555542 233332  24555555555555 2344332  3555555


Q ss_pred             CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927          728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS  807 (1005)
Q Consensus       728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~  807 (1005)
                      +++|++++ +|..+.  ++|+.|++++|+++..   |..+  .++|+.|++++|.+++ +|..+                
T Consensus       290 Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L---P~~l--~~sL~~L~Ls~N~Lt~-LP~~l----------------  344 (754)
T PRK15370        290 VYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL---PETL--PPGLKTLEAGENALTS-LPASL----------------  344 (754)
T ss_pred             CCCCcccc-Ccccch--hhHHHHHhcCCccccC---Cccc--cccceeccccCCcccc-CChhh----------------
Confidence            55555553 233221  3455566666665531   2222  2456666666666654 34211                


Q ss_pred             hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh
Q 047927          808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL  887 (1005)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  887 (1005)
                                                         .+.|+.|++++|+|+ .+|..+.  +.|+.|+|++|+|+ .+|..
T Consensus       345 -----------------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~  385 (754)
T PRK15370        345 -----------------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPEN  385 (754)
T ss_pred             -----------------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence                                               234667777777776 4565543  57777777777777 46665


Q ss_pred             hhcCCCCCEEeCCCCcCcccCcccc----cCCCCCCeEEccCCcccc
Q 047927          888 IGNLREIESLDLSMNNLSGTIPAQL----ASLNFLSVLNLSYNHLVG  930 (1005)
Q Consensus       888 ~~~l~~L~~LdLs~N~l~~~ip~~l----~~l~~L~~L~ls~N~l~g  930 (1005)
                      +.  ..|+.||+++|+|+ .+|..+    ..++.+..+++.+|+++.
T Consensus       386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            54  35777778888777 445443    334667778888887763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=7.7e-19  Score=206.18  Aligned_cols=202  Identities=26%  Similarity=0.378  Sum_probs=91.7

Q ss_pred             ceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCc
Q 047927          527 KLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS  606 (1005)
Q Consensus       527 ~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls  606 (1005)
                      +...|+++++.++ .+|..+.    ..++.|++++|+++.++...    .++|+.|++++|.++. +|            
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~l----~~nL~~L~Ls~N~Lts-LP------------  236 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPENL----QGNIKTLYANSNQLTS-IP------------  236 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChhh----ccCCCEEECCCCcccc-CC------------
Confidence            4567777777776 4555432    34666666666666554321    1355666666655542 22            


Q ss_pred             CCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCC
Q 047927          607 GNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLN  686 (1005)
Q Consensus       607 ~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~  686 (1005)
                               ..+   ...|+.|++++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  .  +|+.|++++|+++
T Consensus       237 ---------~~l---~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~--sL~~L~Ls~N~Lt  296 (754)
T PRK15370        237 ---------ATL---PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--E--ELRYLSVYDNSIR  296 (754)
T ss_pred             ---------hhh---hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--C--CCcEEECCCCccc
Confidence                     111   123344444444443 2333332  24555555555554 2343332  1  4555555555554


Q ss_pred             ccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC
Q 047927          687 GTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY  766 (1005)
Q Consensus       687 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  766 (1005)
                      +. |..+.  ++|+.|++++|+++. +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++++|++.. +  |..
T Consensus       297 ~L-P~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-L--P~~  364 (754)
T PRK15370        297 TL-PAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-L--PET  364 (754)
T ss_pred             cC-cccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-C--Chh
Confidence            32 22221  244555555555542 232221  345555555555543 333321  345555555554432 1  222


Q ss_pred             CCCCCCccEEEccCCccc
Q 047927          767 NVSWPMLQIIDLASNKFS  784 (1005)
Q Consensus       767 ~~~l~~L~~L~ls~N~~~  784 (1005)
                      +  .+.|+.|++++|+++
T Consensus       365 l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        365 L--PPTITTLDVSRNALT  380 (754)
T ss_pred             h--cCCcCEEECCCCcCC
Confidence            1  134555555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=6.1e-19  Score=194.11  Aligned_cols=136  Identities=23%  Similarity=0.237  Sum_probs=65.7

Q ss_pred             ccCceEEEEecCCcccc----cCChhhhccCCCCeEEccCccccc------cCCchhhhcCcccccEEECCCCcCCcccc
Q 047927          621 FMSLSIFFSFSKNSLTG----VIPESICNATNLLVLDLSYNYLSG------MIPTCLINMSDSQLGVLNLRRNNLNGTVS  690 (1005)
Q Consensus       621 ~~~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~~~L~~L~L~~n~l~~~~~  690 (1005)
                      .+..++.++++++.++.    .++..+...++++.++++++.+.+      .++..+..++  +|+.|++++|.+.+..+
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC--GLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC--ceeEEEccCCCCChhHH
Confidence            34446666666666532    234445555566666666665541      1222333333  55555555555554333


Q ss_pred             CccCCCCC---ccEEeCCCCeecc----cCcccccCC-CCCCEEECCCCcCCCC----cchhhhcCCCCcEEecCCCcCC
Q 047927          691 ATFPANCS---LRTLDLNGNQLEG----MVPKSLANC-SVLEILDLGNNQFDDT----FPCWVKNASRLHVLILRSNNFF  758 (1005)
Q Consensus       691 ~~~~~l~~---L~~L~L~~N~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  758 (1005)
                      ..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            33333333   5555555555542    122333444 5555555555555522    2223444445555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=3.4e-18  Score=188.20  Aligned_cols=257  Identities=24%  Similarity=0.224  Sum_probs=188.0

Q ss_pred             EEecCCccc-ccCChhhhccCCCCeEEccCcccccc----CCchhhhcCcccccEEECCCCcCCc------cccCccCCC
Q 047927          628 FSFSKNSLT-GVIPESICNATNLLVLDLSYNYLSGM----IPTCLINMSDSQLGVLNLRRNNLNG------TVSATFPAN  696 (1005)
Q Consensus       628 L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~~~L~~L~L~~n~l~~------~~~~~~~~l  696 (1005)
                      |+|..+.++ +..+..+..+.+|+.|+++++.+++.    ++..+...+  .++.++++++.+.+      .++..+..+
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~--~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP--SLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC--CceEEeccccccCCcchHHHHHHHHHHhc
Confidence            445555555 34456677788899999999998542    444555554  69999999998873      334567778


Q ss_pred             CCccEEeCCCCeecccCcccccCCCC---CCEEECCCCcCCC----CcchhhhcC-CCCcEEecCCCcCCccc--CCCCC
Q 047927          697 CSLRTLDLNGNQLEGMVPKSLANCSV---LEILDLGNNQFDD----TFPCWVKNA-SRLHVLILRSNNFFGNI--SCPRY  766 (1005)
Q Consensus       697 ~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~L~~N~l~~~~--~~~~~  766 (1005)
                      ++|++|++++|.+.+..+..+..+..   |++|++++|++++    .+...+..+ ++|+.|++++|.+++..  ..+..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            89999999999998766666666655   9999999999884    233455667 89999999999988432  11334


Q ss_pred             CCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccc
Q 047927          767 NVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF  846 (1005)
Q Consensus       767 ~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  846 (1005)
                      +..++.|+.|++++|.+++.....+..                                             .....+.|
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~---------------------------------------------~l~~~~~L  195 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAE---------------------------------------------GLKANCNL  195 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHH---------------------------------------------HHHhCCCC
Confidence            566788999999999987522111110                                             01124678


Q ss_pred             eEEECCCCeeecc----CcccccCCCCCCEEECCCCcCcccCchhhhc-----CCCCCEEeCCCCcCc----ccCccccc
Q 047927          847 TSIDFSRNNFEGP----IPEEMGLLQSLCALNLSHNALTGSIPSLIGN-----LREIESLDLSMNNLS----GTIPAQLA  913 (1005)
Q Consensus       847 ~~L~Ls~N~l~g~----ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~-----l~~L~~LdLs~N~l~----~~ip~~l~  913 (1005)
                      +.|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .+.|++|++++|.++    ..++..+.
T Consensus       196 ~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~  275 (319)
T cd00116         196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA  275 (319)
T ss_pred             CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh
Confidence            9999999999754    4456677899999999999999744444433     379999999999997    34556677


Q ss_pred             CCCCCCeEEccCCccccc
Q 047927          914 SLNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       914 ~l~~L~~L~ls~N~l~g~  931 (1005)
                      .++.|+++|+++|+++..
T Consensus       276 ~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         276 EKESLLELDLRGNKFGEE  293 (319)
T ss_pred             cCCCccEEECCCCCCcHH
Confidence            889999999999999854

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=7.2e-18  Score=151.24  Aligned_cols=181  Identities=30%  Similarity=0.540  Sum_probs=127.2

Q ss_pred             CCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccE
Q 047927          696 NCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQI  775 (1005)
Q Consensus       696 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  775 (1005)
                      +...+.|.|++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++.-   .|..++.+|.|+.
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~---lprgfgs~p~lev  106 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI---LPRGFGSFPALEV  106 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc---CccccCCCchhhh
Confidence            334455555555555 34445555666666666666665 355556666666666666666542   2666777777777


Q ss_pred             EEccCCcccc-cCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCC
Q 047927          776 IDLASNKFSG-RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRN  854 (1005)
Q Consensus       776 L~ls~N~~~~-~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N  854 (1005)
                      ||+++|+++. .+|..+|                                                 .++.|+.|+|+.|
T Consensus       107 ldltynnl~e~~lpgnff-------------------------------------------------~m~tlralyl~dn  137 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFF-------------------------------------------------YMTTLRALYLGDN  137 (264)
T ss_pred             hhccccccccccCCcchh-------------------------------------------------HHHHHHHHHhcCC
Confidence            7777777653 2343222                                                 3566778899999


Q ss_pred             eeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCC---CeEEccCCccccc
Q 047927          855 NFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFL---SVLNLSYNHLVGR  931 (1005)
Q Consensus       855 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L---~~L~ls~N~l~g~  931 (1005)
                      .|. .+|..++++++||.|.+..|.+- ..|.++|.+++|+.|++.+|+++ .+|..++++.-.   +++.+.+|+..-.
T Consensus       138 dfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p  214 (264)
T KOG0617|consen  138 DFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP  214 (264)
T ss_pred             Ccc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence            997 78999999999999999999998 78999999999999999999999 677778776543   4566778887654


Q ss_pred             CC
Q 047927          932 IP  933 (1005)
Q Consensus       932 ip  933 (1005)
                      |.
T Consensus       215 Ia  216 (264)
T KOG0617|consen  215 IA  216 (264)
T ss_pred             HH
Confidence            43

>PLN03150 hypothetical protein; Provisional

Probab=99.58  E-value=4.5e-15  Score=174.65  Aligned_cols=117  Identities=34%  Similarity=0.607  Sum_probs=104.8

Q ss_pred             cceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEcc
Q 047927          845 IFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLS  924 (1005)
Q Consensus       845 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  924 (1005)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|+.++++++|++|||+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCc--ccccccccccCCCCCCCCCC-CCCC
Q 047927          925 YNHLVGRIPTSTQ--LQSFLATSFEGNDRLWGPPL-NVCP  961 (1005)
Q Consensus       925 ~N~l~g~ip~~~~--~~~~~~~~~~gn~~lc~~~~-~~c~  961 (1005)
                      +|+++|.+|....  +.......+.||+.+||.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997532  22334567899999999764 3474

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=5.6e-17  Score=145.58  Aligned_cols=185  Identities=28%  Similarity=0.439  Sum_probs=111.8

Q ss_pred             ccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927          645 NATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE  724 (1005)
Q Consensus       645 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  724 (1005)
                      ++.+.+.|.||+|+++ .+|..+..+.  +|++|++++|++.. .|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~--nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELK--NLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhh--hhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            4445555666666665 4555555555  56666666666552 3445555556666666666655 5566666666666


Q ss_pred             EEECCCCcCC-CCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccC
Q 047927          725 ILDLGNNQFD-DTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG  803 (1005)
Q Consensus       725 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~  803 (1005)
                      .||+.+|.+. ..+|.-|..++.|+.|+|+.|.|.-   .|..++.+++|++                            
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~---lp~dvg~lt~lqi----------------------------  154 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI---LPPDVGKLTNLQI----------------------------  154 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCccc---CChhhhhhcceeE----------------------------
Confidence            6666666554 3455555555555556665555531   1444444444444                            


Q ss_pred             CchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCccc
Q 047927          804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGS  883 (1005)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~  883 (1005)
                                                                   |.+..|.+- .+|.++|.++.|++|.+.+|+++ .
T Consensus       155 ---------------------------------------------l~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v  187 (264)
T KOG0617|consen  155 ---------------------------------------------LSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V  187 (264)
T ss_pred             ---------------------------------------------EeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence                                                         444444443 57888888888888888888888 6


Q ss_pred             CchhhhcCCC---CCEEeCCCCcCcccCcccc
Q 047927          884 IPSLIGNLRE---IESLDLSMNNLSGTIPAQL  912 (1005)
Q Consensus       884 ip~~~~~l~~---L~~LdLs~N~l~~~ip~~l  912 (1005)
                      +|.+++++.-   =+.+.+.+|..-..|.++|
T Consensus       188 lppel~~l~l~~~k~v~r~E~NPwv~pIaeQf  219 (264)
T KOG0617|consen  188 LPPELANLDLVGNKQVMRMEENPWVNPIAEQF  219 (264)
T ss_pred             cChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence            7777877643   2456677787776776665

>PLN03150 hypothetical protein; Provisional

Probab=99.38  E-value=2.1e-12  Score=152.26  Aligned_cols=128  Identities=32%  Similarity=0.536  Sum_probs=101.6

Q ss_pred             cCCCcHHHHHHHHHHhhhCCCCCCCcccccCCCCCCCCc----ccceeEECCC-----CCEEEEEcCCCCcccccCCCcc
Q 047927            5 SGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCC----TWSGVDCDEA-----GRVIGLDLSEESISAGIDNSSS   75 (1005)
Q Consensus         5 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~~~c----~w~gv~c~~~-----~~v~~L~L~~~~l~~~~~~~~~   75 (1005)
                      ...+.++|.+||++||+.+.. +.    ..+|+. ..||    .|.||.|...     .+|+.|+|+++.+.+.+  +..
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~-~~----~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i--p~~  437 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGL-PL----RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI--PND  437 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCC-cc----cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC--CHH
Confidence            345677899999999999854 31    247963 3442    7999999521     25899999999998877  778


Q ss_pred             cccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCccc
Q 047927           76 LFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYF  141 (1005)
Q Consensus        76 l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~  141 (1005)
                      ++++++|++|+|++|.+.+. +|..++.+++|++|+|++|.+.+.+|..++++++|++|++++|.+
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             HhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence            88888889999988888776 888888888888888888888888888888888888888877654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=3.9e-13  Score=143.60  Aligned_cols=195  Identities=26%  Similarity=0.401  Sum_probs=120.8

Q ss_pred             EEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCC
Q 047927          626 IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLN  705 (1005)
Q Consensus       626 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  705 (1005)
                      ...+++.|++. .+|..++.+..|+.+.+..|.+. .+|..+.++.  .|+.|||+.|+++. .|..+..+ -|+.|-++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~--~lt~l~ls~NqlS~-lp~~lC~l-pLkvli~s  151 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE--ALTFLDLSSNQLSH-LPDGLCDL-PLKVLIVS  151 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh--HHHHhhhccchhhc-CChhhhcC-cceeEEEe
Confidence            44555555555 45566666666666666666665 5666666665  56666666666652 33333333 36666666


Q ss_pred             CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccc
Q 047927          706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG  785 (1005)
Q Consensus       706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~  785 (1005)
                      +|+++ .+|+.++.+..|..||.+.|.+. .+|..++++.+|+.|.++.|++..                          
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--------------------------  203 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--------------------------  203 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--------------------------
Confidence            66666 55666666666666666666665 345555566666666555555431                          


Q ss_pred             cCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCccccc
Q 047927          786 RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMG  865 (1005)
Q Consensus       786 ~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~  865 (1005)
                       +|.+.. +                                                 -.|..||+|+|+++ .||-.|.
T Consensus       204 -lp~El~-~-------------------------------------------------LpLi~lDfScNkis-~iPv~fr  231 (722)
T KOG0532|consen  204 -LPEELC-S-------------------------------------------------LPLIRLDFSCNKIS-YLPVDFR  231 (722)
T ss_pred             -CCHHHh-C-------------------------------------------------CceeeeecccCcee-ecchhhh
Confidence             222211 0                                                 12567888888888 7999999


Q ss_pred             CCCCCCEEECCCCcCcccCchhhh---cCCCCCEEeCCCCcCcccC
Q 047927          866 LLQSLCALNLSHNALTGSIPSLIG---NLREIESLDLSMNNLSGTI  908 (1005)
Q Consensus       866 ~l~~L~~L~Ls~N~l~g~ip~~~~---~l~~L~~LdLs~N~l~~~i  908 (1005)
                      +|+.|++|-|.+|.|. ..|..|-   ..-=.++|+..-++ +|.-
T Consensus       232 ~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q-~~~a  275 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ-SGGA  275 (722)
T ss_pred             hhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc-ccCC
Confidence            9999999999999999 5676663   33345677777775 4433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=6.5e-13  Score=141.97  Aligned_cols=158  Identities=27%  Similarity=0.358  Sum_probs=122.9

Q ss_pred             CCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCc
Q 047927          613 SIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSAT  692 (1005)
Q Consensus       613 ~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~  692 (1005)
                      .+|..+.. +..|+.+.++.|.+. .+|..++++..|..+||+.|+++ .+|..++.++   |+.|.+++|+++ .+|+.
T Consensus        89 elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp---Lkvli~sNNkl~-~lp~~  161 (722)
T KOG0532|consen   89 ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP---LKVLIVSNNKLT-SLPEE  161 (722)
T ss_pred             cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc---ceeEEEecCccc-cCCcc
Confidence            55655553 556777888888877 78899999999999999999998 8899999985   999999999998 56777


Q ss_pred             cCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCC
Q 047927          693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPM  772 (1005)
Q Consensus       693 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  772 (1005)
                      ++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|++.. +|+.+..+ .|..||+++|++...   |..+..+..
T Consensus       162 ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~i---Pv~fr~m~~  235 (722)
T KOG0532|consen  162 IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKISYL---PVDFRKMRH  235 (722)
T ss_pred             cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCceeec---chhhhhhhh
Confidence            788899999999999999 678899999999999999999985 56666644 466777777776521   444444444


Q ss_pred             ccEEEccCCcc
Q 047927          773 LQIIDLASNKF  783 (1005)
Q Consensus       773 L~~L~ls~N~~  783 (1005)
                      |++|-|.+|++
T Consensus       236 Lq~l~LenNPL  246 (722)
T KOG0532|consen  236 LQVLQLENNPL  246 (722)
T ss_pred             heeeeeccCCC
Confidence            44444444433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.20  E-value=2.7e-12  Score=129.84  Aligned_cols=146  Identities=23%  Similarity=0.260  Sum_probs=72.4

Q ss_pred             cCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHH---------HhccCCCccEEEc
Q 047927          126 SGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQA---------LSSLVPKLQVLSL  196 (1005)
Q Consensus       126 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---------l~~l~~~L~~L~L  196 (1005)
                      -++++|++||||+|.+...    ....+...+..+..|++|++.+|.+...+-..+..         .....+.|+++..
T Consensus        89 ~~~~~L~~ldLSDNA~G~~----g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~  164 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPK----GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC  164 (382)
T ss_pred             hcCCceeEeeccccccCcc----chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence            3445666666666654221    12334555666777777777777665544433221         1122356666666


Q ss_pred             cCCCCCCCCC----ccccCCCCCcEEECCCCCCCCC----cchhccCCCCCcEEEccCCCCCcc----CccccCCCCCCC
Q 047927          197 SGCFLSGPVD----PSLSNLRSLSVIRLDMNDLYSP----VPEFLADFSNLTSLYLSSCGLHGA----FPEKILQLPTLE  264 (1005)
Q Consensus       197 ~~n~~~~~~~----~~l~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~  264 (1005)
                      .+|++.....    ..|...+.|+.+.+..|.+...    +...+..+++|++|||.+|-++..    +...+..+++|+
T Consensus       165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR  244 (382)
T ss_pred             eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence            6665543322    2234445555555555544321    123344555555555555554422    222333445555


Q ss_pred             EEeCCCCCCCC
Q 047927          265 TLDLSYNELLQ  275 (1005)
Q Consensus       265 ~L~Ls~n~~~~  275 (1005)
                      .|++++|.+..
T Consensus       245 El~l~dcll~~  255 (382)
T KOG1909|consen  245 ELNLGDCLLEN  255 (382)
T ss_pred             eeccccccccc
Confidence            55555554433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1e-10  Score=132.33  Aligned_cols=198  Identities=33%  Similarity=0.453  Sum_probs=104.9

Q ss_pred             eEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCC-CCccEEeCCCCeecccCcccccCCCCCCEEECC
Q 047927          651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPAN-CSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG  729 (1005)
Q Consensus       651 ~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  729 (1005)
                      .++++.|.+... ...+...+  .++.|++.+|.++.+.+. ...+ .+|+.|++++|++. .+|..+..+++|+.|+++
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~--~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELT--NLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccccC-chhhhccc--ceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccC
Confidence            456666655322 12222323  566666666666644332 2222 25666666666666 344556666666666666


Q ss_pred             CCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhh
Q 047927          730 NNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSEL  809 (1005)
Q Consensus       730 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~  809 (1005)
                      +|+++. +|...+..+.|+.|++++|++...   |.......                                      
T Consensus       172 ~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l---~~~~~~~~--------------------------------------  209 (394)
T COG4886         172 FNDLSD-LPKLLSNLSNLNNLDLSGNKISDL---PPEIELLS--------------------------------------  209 (394)
T ss_pred             Cchhhh-hhhhhhhhhhhhheeccCCccccC---chhhhhhh--------------------------------------
Confidence            666663 333333555555555555555421   22222222                                      


Q ss_pred             chhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhh
Q 047927          810 KHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIG  889 (1005)
Q Consensus       810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~  889 (1005)
                                                         .+.++++++|+.. .++..++++..+..+.+++|++. .+|..++
T Consensus       210 -----------------------------------~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~  252 (394)
T COG4886         210 -----------------------------------ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG  252 (394)
T ss_pred             -----------------------------------hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence                                               2444555555322 34455556666666666666665 3355566


Q ss_pred             cCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCC
Q 047927          890 NLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPT  934 (1005)
Q Consensus       890 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  934 (1005)
                      .+++++.|++++|+++.. +. ++.+..++.||+++|.++...|.
T Consensus       253 ~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         253 NLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence            666666666666666633 22 66666666666666666655443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=1.3e-11  Score=125.06  Aligned_cols=244  Identities=22%  Similarity=0.197  Sum_probs=170.3

Q ss_pred             CCEEEEEcCCCCccccc--CCCcccccccccceeecCCccC--CCCCCCCc-------ccCCCCCcEEEcccCCCcCCCc
Q 047927           54 GRVIGLDLSEESISAGI--DNSSSLFSLKYLQSLNLAFNMF--NATEIPSG-------LGNLTNLTTLNLSNAGFAGQIP  122 (1005)
Q Consensus        54 ~~v~~L~L~~~~l~~~~--~~~~~l~~l~~L~~L~Ls~~~~--~~~~lp~~-------l~~l~~L~~L~Ls~n~~~~~lp  122 (1005)
                      ..++.++|+|+.+...-  .....+.+.+.||.-++|.-..  ...++|+.       +-.+++|++||||+|.+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            56999999999886321  0034567788999999985321  11235543       3456799999999999875555


Q ss_pred             cc----ccCCCCCcEEeCCCcccccCccccC-----CCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccE
Q 047927          123 IQ----VSGMTRLVTLDLSGMYFVRAPLKLE-----NPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQV  193 (1005)
Q Consensus       123 ~~----l~~l~~L~~L~ls~n~~~~~~~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~  193 (1005)
                      ..    +..++.|++|.+.+|.+.......-     .-.....+..-+.|+.+.+..|.+...+...+.......+.|+.
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee  189 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE  189 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence            43    4678999999999997643221110     00122345677899999999999988888777776665599999


Q ss_pred             EEccCCCCCCCC----CccccCCCCCcEEECCCCCCCCC----cchhccCCCCCcEEEccCCCCCccCcccc-----CCC
Q 047927          194 LSLSGCFLSGPV----DPSLSNLRSLSVIRLDMNDLYSP----VPEFLADFSNLTSLYLSSCGLHGAFPEKI-----LQL  260 (1005)
Q Consensus       194 L~L~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l  260 (1005)
                      +.++.|.+....    ..++..+++|++|++..|.++..    +...+..++.|++|++++|.+.......+     ...
T Consensus       190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~  269 (382)
T KOG1909|consen  190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA  269 (382)
T ss_pred             EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence            999999876432    35678999999999999988654    34567778999999999998876544433     236


Q ss_pred             CCCCEEeCCCCCCCCCCCCc----ccCCCCCcEEEcccccc
Q 047927          261 PTLETLDLSYNELLQGSLPD----FHQNLSLETLILSATNF  297 (1005)
Q Consensus       261 ~~L~~L~Ls~n~~~~~~~~~----~~~~~~L~~L~L~~n~l  297 (1005)
                      |.|++|.+.+|.|.......    ....+.|++|+|++|.+
T Consensus       270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            88888888888765433221    12245555555555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.01  E-value=3.9e-10  Score=127.70  Aligned_cols=199  Identities=33%  Similarity=0.444  Sum_probs=123.4

Q ss_pred             EEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhc-CcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927          628 FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINM-SDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG  706 (1005)
Q Consensus       628 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  706 (1005)
                      +..+.|.+...+ ..+...+.++.|++.+|.++ .+|...... .  +|+.|++++|++... |..+..+++|+.|++++
T Consensus        98 l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~--nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          98 LDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKS--NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchh--hcccccccccchhhh-hhhhhccccccccccCC
Confidence            444444443222 23344567777777777777 445444443 2  577888888887743 34567777888888888


Q ss_pred             CeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccccc
Q 047927          707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR  786 (1005)
Q Consensus       707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~  786 (1005)
                      |+++ .+|...+.++.|+.|++++|+++. +|...+....|++|.+++|+...   .+..+..+.++.            
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~---~~~~~~~~~~l~------------  235 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIE---LLSSLSNLKNLS------------  235 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCccee---cchhhhhccccc------------
Confidence            8888 455555577888888888888874 55555566668888888885221   133333333333            


Q ss_pred             CChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccC
Q 047927          787 LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGL  866 (1005)
Q Consensus       787 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~  866 (1005)
                                                                                   .+.+++|++. .+|..++.
T Consensus       236 -------------------------------------------------------------~l~l~~n~~~-~~~~~~~~  253 (394)
T COG4886         236 -------------------------------------------------------------GLELSNNKLE-DLPESIGN  253 (394)
T ss_pred             -------------------------------------------------------------ccccCCceee-eccchhcc
Confidence                                                                         3444444444 22555666


Q ss_pred             CCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccc
Q 047927          867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQL  912 (1005)
Q Consensus       867 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l  912 (1005)
                      +..++.|++++|.++ .++. ++.+.+++.||+++|.++...|...
T Consensus       254 l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         254 LSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             ccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence            666777777777777 3444 6677777777777777776555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.8e-10  Score=120.07  Aligned_cols=215  Identities=25%  Similarity=0.257  Sum_probs=108.9

Q ss_pred             ccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCc--ccccCCCCCcEEeCCCcccccCccccCCCChh
Q 047927           77 FSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIP--IQVSGMTRLVTLDLSGMYFVRAPLKLENPNLS  154 (1005)
Q Consensus        77 ~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp--~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~  154 (1005)
                      ++++.||...|.++.+.....-+....|++++.||||.|-+...-|  .-..+|++|+.|+++.|++.....       .
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-------s  190 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-------S  190 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-------c
Confidence            3566777777777666432111355667777777777776553322  223457777777777776533211       1


Q ss_pred             hhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhcc
Q 047927          155 GLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLA  234 (1005)
Q Consensus       155 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~  234 (1005)
                      ..-.-+++|+.|.++++.++...+.++.   ..+|+|+.|+|..|.....-.....-+..|+.|+|++|++....     
T Consensus       191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~---~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----  262 (505)
T KOG3207|consen  191 NTTLLLSHLKQLVLNSCGLSWKDVQWIL---LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----  262 (505)
T ss_pred             cchhhhhhhheEEeccCCCCHHHHHHHH---HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----
Confidence            1122455566666666655543333332   12355666666555422222222233344444444444443221     


Q ss_pred             CCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcc------cCCCCCcEEEccccccccc-Cchhhcc
Q 047927          235 DFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDF------HQNLSLETLILSATNFSGI-LPDSIKN  307 (1005)
Q Consensus       235 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~------~~~~~L~~L~L~~n~l~~~-~p~~l~~  307 (1005)
                                        .-...+.++.|+.|.++.+.+.+...++.      ..+++|+.|++..|++... .-..+..
T Consensus       263 ------------------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~  324 (505)
T KOG3207|consen  263 ------------------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT  324 (505)
T ss_pred             ------------------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence                              01223445555555555555444444433      2356666666666665321 1134455


Q ss_pred             CCCCCEEeecCCccCCC
Q 047927          308 LKNLSRVEFYLCNFNGP  324 (1005)
Q Consensus       308 l~~L~~L~l~~n~~~~~  324 (1005)
                      +++|+.|.+..|.+..+
T Consensus       325 l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  325 LENLKHLRITLNYLNKE  341 (505)
T ss_pred             cchhhhhhccccccccc
Confidence            66777777777766643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=1.8e-10  Score=113.53  Aligned_cols=88  Identities=27%  Similarity=0.369  Sum_probs=51.4

Q ss_pred             hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCc-ccccCCC
Q 047927          643 ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVP-KSLANCS  721 (1005)
Q Consensus       643 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~  721 (1005)
                      +..+++|+.||||+|.++ .+..+-..+.  +.+.|.|+.|.+...  .++..+.+|.+||+++|+|..... ..+++++
T Consensus       325 La~L~~L~~LDLS~N~Ls-~~~Gwh~KLG--NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP  399 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGNLLA-ECVGWHLKLG--NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP  399 (490)
T ss_pred             hhhcccceEeecccchhH-hhhhhHhhhc--CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhccccccc
Confidence            566777788888888776 4444444444  566666666665432  234555566666666666654321 3455555


Q ss_pred             CCCEEECCCCcCCC
Q 047927          722 VLEILDLGNNQFDD  735 (1005)
Q Consensus       722 ~L~~L~Ls~N~l~~  735 (1005)
                      -|+.+.|.+|++.+
T Consensus       400 CLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  400 CLETLRLTGNPLAG  413 (490)
T ss_pred             HHHHHhhcCCCccc
Confidence            55555555555553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.4e-10  Score=120.73  Aligned_cols=210  Identities=24%  Similarity=0.182  Sum_probs=109.1

Q ss_pred             ccCCCCCEEeecCCccCCCCC-ccCCCCCCCcEEECcCCcCccCCC---cccccCcccEEECCCCcCcCCCCcccccccc
Q 047927          306 KNLKNLSRVEFYLCNFNGPIP-TSMSDLSQLVYLDMSFNHFSGPIP---SLHMFRNLAYLDLSYNIFTGGISSIGWEQLL  381 (1005)
Q Consensus       306 ~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~  381 (1005)
                      .++.+|+++.+.++....... .....|++++.||++.|-+....+   -...+++|+.|+++.|.+........-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            467788888888876653221 245567888888888886653211   1233445666666666554322222122334


Q ss_pred             cccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEEC
Q 047927          382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLL  461 (1005)
Q Consensus       382 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  461 (1005)
                                              +|+.|.++.|.++..--......+|+++.|++..|.....-......+..|+.|+|
T Consensus       198 ------------------------~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL  253 (505)
T KOG3207|consen  198 ------------------------HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL  253 (505)
T ss_pred             ------------------------hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence                                    44444444444431111112223445555555555322122222334455666666


Q ss_pred             CCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcc-----cccCcccceEEcCCccCcCCCC---CCCCCceeEEEC
Q 047927          462 SSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSV-----YCFPPLLTTLSLASCKLSAIPN---LRKQTKLYHLDL  533 (1005)
Q Consensus       462 ~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~~L~~L~L~~n~l~~l~~---l~~l~~L~~L~L  533 (1005)
                      ++|++...-.......++.|..|+++.+.++.+.....     ....++|+.|++..|++..++.   +..+++|+.|.+
T Consensus       254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            66665432222344556666666666666655543332     2334456667776666655554   444556666666


Q ss_pred             cCCcCC
Q 047927          534 SDNQIS  539 (1005)
Q Consensus       534 s~n~l~  539 (1005)
                      ..|.+.
T Consensus       334 ~~n~ln  339 (505)
T KOG3207|consen  334 TLNYLN  339 (505)
T ss_pred             cccccc
Confidence            666665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=3.9e-10  Score=108.01  Aligned_cols=127  Identities=28%  Similarity=0.333  Sum_probs=38.9

Q ss_pred             hccCCCCeEEccCccccccCCchhh-hcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccc-cCCC
Q 047927          644 CNATNLLVLDLSYNYLSGMIPTCLI-NMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSL-ANCS  721 (1005)
Q Consensus       644 ~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~  721 (1005)
                      -++..++.|+|++|.|+. + +.+. .+.  +|+.|++++|.++...  .+..++.|++|++++|+|+.. ++.+ ..++
T Consensus        16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~--~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp   88 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-I-ENLGATLD--KLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLP   88 (175)
T ss_dssp             ----------------------S--TT-T--T--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred             cccccccccccccccccc-c-cchhhhhc--CCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence            345567777777777763 2 2233 344  6777777777776542  466677777777777777743 3333 3567


Q ss_pred             CCCEEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccC-CCCCCCCCCCccEEE
Q 047927          722 VLEILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNIS-CPRYNVSWPMLQIID  777 (1005)
Q Consensus       722 ~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~  777 (1005)
                      +|+.|++++|+|....- ..++.+++|+.|+|.+|+++..-. -...+..+|+|+.||
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            77777777777764322 345566777777777776653210 011234456666655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=2.7e-09  Score=102.28  Aligned_cols=127  Identities=28%  Similarity=0.320  Sum_probs=46.7

Q ss_pred             CEEEEEcCCCCcccccCCCcccc-cccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccc-cCCCCCc
Q 047927           55 RVIGLDLSEESISAGIDNSSSLF-SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLV  132 (1005)
Q Consensus        55 ~v~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l-~~l~~L~  132 (1005)
                      +++.|+|.|+.+..    ...+. .+.+|+.|||++|.+..  + +.+..+++|++|++++|+++ .++..+ ..+++|+
T Consensus        20 ~~~~L~L~~n~I~~----Ie~L~~~l~~L~~L~Ls~N~I~~--l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   20 KLRELNLRGNQIST----IENLGATLDKLEVLDLSNNQITK--L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccc----ccchhhhhcCCCEEECCCCCCcc--c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            57778888887764    34455 56788888888887754  3 35667788888888888876 444444 3578888


Q ss_pred             EEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEcc
Q 047927          133 TLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLS  197 (1005)
Q Consensus       133 ~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~  197 (1005)
                      +|++++|++.+...       ...+..+++|++|++.+|.+..........+..+ |+|+.||-.
T Consensus        92 ~L~L~~N~I~~l~~-------l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l-P~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISDLNE-------LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL-PSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---SCCC-------CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETTE
T ss_pred             EEECcCCcCCChHH-------hHHHHcCCCcceeeccCCcccchhhHHHHHHHHc-ChhheeCCE
Confidence            88888887755321       2346677777788887777765543333333333 777777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=1.5e-09  Score=130.52  Aligned_cols=107  Identities=27%  Similarity=0.366  Sum_probs=79.8

Q ss_pred             CCEEEEEcCCCC--cccccCCCcccccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCC
Q 047927           54 GRVIGLDLSEES--ISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRL  131 (1005)
Q Consensus        54 ~~v~~L~L~~~~--l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L  131 (1005)
                      ..++.|=+.++.  +....  ...|..+++||+|||++|.-. .++|+.|+.+.+||||+++++.+. .+|.++++|++|
T Consensus       545 ~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            356677776664  22211  234778999999999986543 449999999999999999999987 899999999999


Q ss_pred             cEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCcc
Q 047927          132 VTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVN  172 (1005)
Q Consensus       132 ~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  172 (1005)
                      .+|++..+......        ......+++||+|.+....
T Consensus       621 ~~Lnl~~~~~l~~~--------~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRLESI--------PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heeccccccccccc--------cchhhhcccccEEEeeccc
Confidence            99999976532211        3346668889988887654

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.85  E-value=2.5e-09  Score=76.37  Aligned_cols=40  Identities=40%  Similarity=0.787  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhhhCCCCCCCcccccCCCCC--CCCcccceeEEC
Q 047927           10 SDQQSLLLQMKSRLTFDSSVSFRMVQWSQS--NDCCTWSGVDCD   51 (1005)
Q Consensus        10 ~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~   51 (1005)
                      ++|++||++||+++..++.  +.+.+|+.+  .+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~--~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS--GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC---CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC--cccccCCCcCCCCCeeeccEEeC
Confidence            6899999999999986563  589999886  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.83  E-value=1.1e-09  Score=107.97  Aligned_cols=130  Identities=37%  Similarity=0.419  Sum_probs=98.5

Q ss_pred             cCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEE
Q 047927          431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLS  510 (1005)
Q Consensus       431 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  510 (1005)
                      .|+++|+++|.|+ .+..++.-.|.++.|++++|.+. .+.  .++.+++|+.||+++|.++.+.++.  .-..++++|.
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh--~KLGNIKtL~  358 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVGWH--LKLGNIKTLK  358 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhhhH--hhhcCEeeee
Confidence            3777888888777 56667777889999999999987 443  4888999999999999888776553  2234578888


Q ss_pred             cCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCccc
Q 047927          511 LASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ  590 (1005)
Q Consensus       511 L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  590 (1005)
                      +++|.|.++.+++.+-+|..||+++|+|..                          +..-..++++|.|+.+.+.+|++.
T Consensus       359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~--------------------------ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEE--------------------------LDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhhHhhhhhhHhhhhheeccccccchhh--------------------------HHHhcccccccHHHHHhhcCCCcc
Confidence            888888888888888888888888887752                          111224667788999999998887


Q ss_pred             cc
Q 047927          591 GK  592 (1005)
Q Consensus       591 ~~  592 (1005)
                      +.
T Consensus       413 ~~  414 (490)
T KOG1259|consen  413 GS  414 (490)
T ss_pred             cc
Confidence            53

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=4.2e-09  Score=82.72  Aligned_cols=60  Identities=43%  Similarity=0.563  Sum_probs=40.4

Q ss_pred             CCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcc
Q 047927          869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL  928 (1005)
Q Consensus       869 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  928 (1005)
                      +|++|++++|+++...+..|..+++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466666777766654445666677777777777777666666677777777777777664

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.75  E-value=1.1e-09  Score=123.95  Aligned_cols=244  Identities=22%  Similarity=0.215  Sum_probs=143.3

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL  702 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  702 (1005)
                      ..+..+.+..|.+.. +-..++.+++|+.|++.+|+|... ...+..+.  +|++|++++|.|+.+.+  +..++.|+.|
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~--~L~~L~ls~N~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLV--NLQVLDLSFNKITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhh--cchheeccccccccccc--hhhccchhhh
Confidence            334444455555543 223355666777777777777632 22244444  67777777777765533  4445557777


Q ss_pred             eCCCCeecccCcccccCCCCCCEEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCC
Q 047927          703 DLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN  781 (1005)
Q Consensus       703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N  781 (1005)
                      ++++|.|+..  ..+..++.|+.+++++|++...-+ . ...+.+++.+.+.+|.+..    ...+..+..+..+++..|
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l~~n  218 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSLLDN  218 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhcccc
Confidence            7777777743  345556777777777777765544 2 4566666666666666542    222333333333344444


Q ss_pred             cccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcc--cceEEECCCCeeecc
Q 047927          782 KFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILN--IFTSIDFSRNNFEGP  859 (1005)
Q Consensus       782 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~Ls~N~l~g~  859 (1005)
                      .++-.-+..                                                   ...  +++.+++++|.+. .
T Consensus       219 ~i~~~~~l~---------------------------------------------------~~~~~~L~~l~l~~n~i~-~  246 (414)
T KOG0531|consen  219 KISKLEGLN---------------------------------------------------ELVMLHLRELYLSGNRIS-R  246 (414)
T ss_pred             cceeccCcc---------------------------------------------------cchhHHHHHHhcccCccc-c
Confidence            443111100                                                   011  2567788888887 4


Q ss_pred             CcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCccc---Cccc-ccCCCCCCeEEccCCcccccCC
Q 047927          860 IPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT---IPAQ-LASLNFLSVLNLSYNHLVGRIP  933 (1005)
Q Consensus       860 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~ip  933 (1005)
                      +|+.+..+..+..|++++|++...  ..+.....+..+.++.|.+...   .... ......+....+.+|+.....+
T Consensus       247 ~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  247 SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            446677788888888888888753  2345566677777777776522   1221 5666778888888888877655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=1.2e-08  Score=80.04  Aligned_cols=59  Identities=36%  Similarity=0.514  Sum_probs=33.3

Q ss_pred             cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCc
Q 047927          674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ  732 (1005)
Q Consensus       674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  732 (1005)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555555555555555555555555555555555555555555555554

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.68  E-value=1.3e-08  Score=122.63  Aligned_cols=160  Identities=29%  Similarity=0.296  Sum_probs=101.5

Q ss_pred             CCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcE
Q 047927           54 GRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVT  133 (1005)
Q Consensus        54 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~  133 (1005)
                      ..+++|||+++.-.+.+  |.+++.+-|||||+|+++.+.  ++|..+++|+.|.|||+..+.....+|..+..|.+||+
T Consensus       571 ~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             cceEEEECCCCCccCcC--ChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            67999999987655555  899999999999999999986  49999999999999999999876666766677999999


Q ss_pred             EeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCC
Q 047927          134 LDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLR  213 (1005)
Q Consensus       134 L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~  213 (1005)
                      |.+......      ........+.++.+|+.+.......  ...+.+..+..+....+.+.+.++. ....+..+..+.
T Consensus       647 L~l~~s~~~------~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~  717 (889)
T KOG4658|consen  647 LRLPRSALS------NDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCS-KRTLISSLGSLG  717 (889)
T ss_pred             EEeeccccc------cchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccc-cceeeccccccc
Confidence            999865411      1122233455566666555533211  0011111111111112222222221 112334556666


Q ss_pred             CCcEEECCCCCCC
Q 047927          214 SLSVIRLDMNDLY  226 (1005)
Q Consensus       214 ~L~~L~l~~n~~~  226 (1005)
                      +|+.|.+.++.+.
T Consensus       718 ~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  718 NLEELSILDCGIS  730 (889)
T ss_pred             CcceEEEEcCCCc
Confidence            7777776666554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.62  E-value=4.7e-09  Score=118.71  Aligned_cols=219  Identities=25%  Similarity=0.275  Sum_probs=133.3

Q ss_pred             ccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927          645 NATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE  724 (1005)
Q Consensus       645 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  724 (1005)
                      .+..++.+.+..|.+.. +-..+..+.  +|+.|++.+|+|..+... +..+++|++|++++|.|+.+  ..+..++.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~--~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~  143 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLK--SLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLK  143 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhccccccc--ceeeeeccccchhhcccc-hhhhhcchheeccccccccc--cchhhccchh
Confidence            45566666677777653 222344444  667777777776644321 45566677777777777654  2355555666


Q ss_pred             EEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCC-CCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccC
Q 047927          725 ILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCP-RYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG  803 (1005)
Q Consensus       725 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~  803 (1005)
                      .|++++|+++..  ..+..++.|+.+++++|++...-  + . ...+.+++.+++++|.+.-.-...             
T Consensus       144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie--~~~-~~~~~~l~~l~l~~n~i~~i~~~~-------------  205 (414)
T KOG0531|consen  144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIE--NDE-LSELISLEELDLGGNSIREIEGLD-------------  205 (414)
T ss_pred             hheeccCcchhc--cCCccchhhhcccCCcchhhhhh--hhh-hhhccchHHHhccCCchhcccchH-------------
Confidence            677777766532  33444666666666666665321  1 1 345556666666666554211110             


Q ss_pred             CchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCC--CCCEEECCCCcCc
Q 047927          804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQ--SLCALNLSHNALT  881 (1005)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~--~L~~L~Ls~N~l~  881 (1005)
                                                            .+..+..+++..|.++-.-+  +..+.  .|+.+++++|++.
T Consensus       206 --------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~  245 (414)
T KOG0531|consen  206 --------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS  245 (414)
T ss_pred             --------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc
Confidence                                                  12223344778888774322  22233  3889999999998


Q ss_pred             ccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927          882 GSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG  930 (1005)
Q Consensus       882 g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  930 (1005)
                       .+|..+..+..+..||+++|+++..-  .+.....+..+..+.|.+..
T Consensus       246 -~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~  291 (414)
T KOG0531|consen  246 -RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLAL  291 (414)
T ss_pred             -cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcc
Confidence             56577788999999999999998553  34556677788888888763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.9e-09  Score=106.52  Aligned_cols=112  Identities=23%  Similarity=0.264  Sum_probs=80.0

Q ss_pred             ccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcC
Q 047927           81 YLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNL  160 (1005)
Q Consensus        81 ~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l  160 (1005)
                      .|++||||...++...+...+..|.+|+.|.|.++++++.+-..+++-.+|+.|+++.+.      ++......-.+.++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s------G~t~n~~~ll~~sc  259 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS------GFTENALQLLLSSC  259 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc------ccchhHHHHHHHhh
Confidence            588899988887765555667788889999999998888787888888889999988763      23334455567888


Q ss_pred             ccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCC
Q 047927          161 AELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF  200 (1005)
Q Consensus       161 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~  200 (1005)
                      +.|.+|+++.+......+...  .....++|+.|+++++.
T Consensus       260 s~L~~LNlsWc~l~~~~Vtv~--V~hise~l~~LNlsG~r  297 (419)
T KOG2120|consen  260 SRLDELNLSWCFLFTEKVTVA--VAHISETLTQLNLSGYR  297 (419)
T ss_pred             hhHhhcCchHhhccchhhhHH--HhhhchhhhhhhhhhhH
Confidence            888888888876655433221  22334677777777653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=8.8e-09  Score=101.97  Aligned_cols=158  Identities=25%  Similarity=0.379  Sum_probs=78.3

Q ss_pred             hhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCC-CCCCC-CccccCCCCCcEEECCCCCCCCCcchh-
Q 047927          156 LLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF-LSGPV-DPSLSNLRSLSVIRLDMNDLYSPVPEF-  232 (1005)
Q Consensus       156 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~-~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~~-  232 (1005)
                      .+..+++|+.|.+.|+.+.+.-...   +... .+|+.++++.|. ++... .--+.+++.|+.|+++++.+....-.. 
T Consensus       205 iLs~C~kLk~lSlEg~~LdD~I~~~---iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~  280 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLDDPIVNT---IAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA  280 (419)
T ss_pred             HHHHHHhhhhccccccccCcHHHHH---Hhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence            3444455555555554444332221   2222 455555555542 11110 012445666666666666554322111 


Q ss_pred             ccC-CCCCcEEEccCCC--CCc-cCccccCCCCCCCEEeCCCCCCCCC-CCCcccCCCCCcEEEcccccccccCchh---
Q 047927          233 LAD-FSNLTSLYLSSCG--LHG-AFPEKILQLPTLETLDLSYNELLQG-SLPDFHQNLSLETLILSATNFSGILPDS---  304 (1005)
Q Consensus       233 l~~-l~~L~~L~L~~n~--l~~-~~p~~l~~l~~L~~L~Ls~n~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~---  304 (1005)
                      +.. -++|+.|+++++.  +.. .+..--.++++|.+||||+|..... -+..|.+++.|++|.++.|.  ++.|..   
T Consensus       281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~  358 (419)
T KOG2120|consen  281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLE  358 (419)
T ss_pred             HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeee
Confidence            111 2566677777663  111 1112224577777777777643332 22345667777777777764  344443   


Q ss_pred             hccCCCCCEEeecCC
Q 047927          305 IKNLKNLSRVEFYLC  319 (1005)
Q Consensus       305 l~~l~~L~~L~l~~n  319 (1005)
                      +...+.|.+|++.++
T Consensus       359 l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  359 LNSKPSLVYLDVFGC  373 (419)
T ss_pred             eccCcceEEEEeccc
Confidence            455677788877665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.25  E-value=3.5e-08  Score=86.35  Aligned_cols=104  Identities=27%  Similarity=0.390  Sum_probs=55.1

Q ss_pred             cceEEECCCCeeeccCccccc-CCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927          845 IFTSIDFSRNNFEGPIPEEMG-LLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL  923 (1005)
Q Consensus       845 ~l~~L~Ls~N~l~g~ip~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  923 (1005)
                      .++.++||+|.|.. .|+.|. ..+..+.|||++|.|+ .+|+++..++.|+.|+++.|.+. ..|..+..|.+|-+||.
T Consensus        54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            34555666666653 233332 3345566666666666 56666666666666666666665 44555555666666666


Q ss_pred             cCCcccccCCCCCcccccccccccCCCCC
Q 047927          924 SYNHLVGRIPTSTQLQSFLATSFEGNDRL  952 (1005)
Q Consensus       924 s~N~l~g~ip~~~~~~~~~~~~~~gn~~l  952 (1005)
                      -+|.+. +||...-+.+..+..-.||.++
T Consensus       131 ~~na~~-eid~dl~~s~~~al~~lgnepl  158 (177)
T KOG4579|consen  131 PENARA-EIDVDLFYSSLPALIKLGNEPL  158 (177)
T ss_pred             CCCccc-cCcHHHhccccHHHHHhcCCcc
Confidence            655542 4554432333333333455443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.25  E-value=6e-08  Score=101.01  Aligned_cols=211  Identities=19%  Similarity=0.105  Sum_probs=92.9

Q ss_pred             CCEEEEEcCCCCcccccCCCcccccccccceeecCCcc-CCCCCCCCcccCCCCCcEEEcccCC-CcCCCcccc-cCCCC
Q 047927           54 GRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNM-FNATEIPSGLGNLTNLTTLNLSNAG-FAGQIPIQV-SGMTR  130 (1005)
Q Consensus        54 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~lp~~l~~l~~L~~L~Ls~n~-~~~~lp~~l-~~l~~  130 (1005)
                      ++++.|++.|+.-.+.-..-.....+++++.|++.++. +++..+-..-..|.+|++|++..|. ++...-..+ ..+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            45555666554433211101122345566666665553 2222111112345666666666642 222222222 24666


Q ss_pred             CcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCC-CCCCCCc-c
Q 047927          131 LVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF-LSGPVDP-S  208 (1005)
Q Consensus       131 L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~-~~~~~~~-~  208 (1005)
                      |++++++++.-      +....+....+++..++.+.+.|+  ...+.+.+..+...++.+.++++..|. ++++.-. .
T Consensus       218 L~~lNlSwc~q------i~~~gv~~~~rG~~~l~~~~~kGC--~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i  289 (483)
T KOG4341|consen  218 LKYLNLSWCPQ------ISGNGVQALQRGCKELEKLSLKGC--LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI  289 (483)
T ss_pred             HHHhhhccCch------hhcCcchHHhccchhhhhhhhccc--ccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence            66666666531      122223334455555555555543  222333343343333455556655543 2221110 1


Q ss_pred             ccCCCCCcEEECCCCCCCCCcc-hh-ccCCCCCcEEEccCCC-CCccCccccC-CCCCCCEEeCCCCC
Q 047927          209 LSNLRSLSVIRLDMNDLYSPVP-EF-LADFSNLTSLYLSSCG-LHGAFPEKIL-QLPTLETLDLSYNE  272 (1005)
Q Consensus       209 l~~l~~L~~L~l~~n~~~~~~p-~~-l~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~  272 (1005)
                      -..+..|++++.+++...+..+ .. -.+..+|++|.++.|+ +++.-...++ +++.|+.+++..+.
T Consensus       290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence            1235566666666554322211 11 2335666666666663 3332222222 34556666665553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.18  E-value=2.8e-07  Score=90.35  Aligned_cols=219  Identities=19%  Similarity=0.196  Sum_probs=127.0

Q ss_pred             CCEEEEEcCCCCcccccC--CCcccccccccceeecCCccCC--CCCCC-------CcccCCCCCcEEEcccCCCcCCCc
Q 047927           54 GRVIGLDLSEESISAGID--NSSSLFSLKYLQSLNLAFNMFN--ATEIP-------SGLGNLTNLTTLNLSNAGFAGQIP  122 (1005)
Q Consensus        54 ~~v~~L~L~~~~l~~~~~--~~~~l~~l~~L~~L~Ls~~~~~--~~~lp-------~~l~~l~~L~~L~Ls~n~~~~~lp  122 (1005)
                      ..++.+|||||.+.....  ....+.+-++|+..+++.-...  ..++|       +.+-+|++|+..+||+|.|....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            457888888888763220  0234556677888888753221  11233       335567888888888888876666


Q ss_pred             cc----ccCCCCCcEEeCCCcccccCccccCCC------ChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCcc
Q 047927          123 IQ----VSGMTRLVTLDLSGMYFVRAPLKLENP------NLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQ  192 (1005)
Q Consensus       123 ~~----l~~l~~L~~L~ls~n~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~  192 (1005)
                      ..    |++-+.|+||.+++|.+...... .+.      ........-+.|+...+..|.+...+..........-.+|+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~-rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGG-RIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchh-HHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            43    45667888888888865332111 000      11122445677777777777776555544444332225777


Q ss_pred             EEEccCCCCCCCCC-----ccccCCCCCcEEECCCCCCCCC----cchhccCCCCCcEEEccCCCCCccCcccc----C-
Q 047927          193 VLSLSGCFLSGPVD-----PSLSNLRSLSVIRLDMNDLYSP----VPEFLADFSNLTSLYLSSCGLHGAFPEKI----L-  258 (1005)
Q Consensus       193 ~L~L~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~-  258 (1005)
                      .+.+..|.|....-     ..+..+.+|++|++..|.++-.    +...+..++.|++|.+.+|-++.....++    . 
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            77777776553211     1234567777777777766432    23345556667777777776553322222    1 


Q ss_pred             -CCCCCCEEeCCCCCC
Q 047927          259 -QLPTLETLDLSYNEL  273 (1005)
Q Consensus       259 -~l~~L~~L~Ls~n~~  273 (1005)
                       ..++|+.|...+|.+
T Consensus       269 ~~~p~l~~L~~~Yne~  284 (388)
T COG5238         269 KFVPNLMPLPGDYNER  284 (388)
T ss_pred             hcCCCccccccchhhh
Confidence             246666666666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.17  E-value=4.7e-07  Score=88.80  Aligned_cols=168  Identities=21%  Similarity=0.212  Sum_probs=96.2

Q ss_pred             hhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCC---CCCCC-------ccccCCCCCcEEECCCCC
Q 047927          155 GLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFL---SGPVD-------PSLSNLRSLSVIRLDMND  224 (1005)
Q Consensus       155 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~---~~~~~-------~~l~~l~~L~~L~l~~n~  224 (1005)
                      ..+..+..+++++++||.|.....+|+........+|+..+++.-..   .+.++       .++-+|++|+..+++.|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            34555777778888888887777777655444447788777775321   12222       245678888888888888


Q ss_pred             CCCCcch----hccCCCCCcEEEccCCCCCccCcccc-------------CCCCCCCEEeCCCCCCCCCCCCcc----cC
Q 047927          225 LYSPVPE----FLADFSNLTSLYLSSCGLHGAFPEKI-------------LQLPTLETLDLSYNELLQGSLPDF----HQ  283 (1005)
Q Consensus       225 ~~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l-------------~~l~~L~~L~Ls~n~~~~~~~~~~----~~  283 (1005)
                      +....|.    .+++-+.|++|.+++|++.-.--..+             ..-|.|++.....|++..++...+    ..
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence            8766554    34566888888888887642211112             234566666666666544333211    11


Q ss_pred             CCCCcEEEcccccccccC-----chhhccCCCCCEEeecCCccC
Q 047927          284 NLSLETLILSATNFSGIL-----PDSIKNLKNLSRVEFYLCNFN  322 (1005)
Q Consensus       284 ~~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~l~~n~~~  322 (1005)
                      -..|+++.+..|.|.-..     -..+..+.+|+.|++.+|.++
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            235555555555443110     111233455555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.16  E-value=1.2e-07  Score=105.05  Aligned_cols=129  Identities=36%  Similarity=0.382  Sum_probs=103.0

Q ss_pred             cCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEE
Q 047927          431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLS  510 (1005)
Q Consensus       431 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  510 (1005)
                      .|...+.++|.+. ....++.-++.++.|+|++|+++ .+  +.+..++.|++||+++|.+..++.......  .|+.|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc--~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC--KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh--HHHHhcccccccccccchhccccccchhhh--hheeee
Confidence            4777888888887 56677888899999999999997 33  478999999999999999999887654332  399999


Q ss_pred             cCCccCcCCCCCCCCCceeEEECcCCcCCCCCC-hhhhhhcCCcccEEeCCCCcccCC
Q 047927          511 LASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP-NWLWKIGKDSFNHLNLSHNLLVSL  567 (1005)
Q Consensus       511 L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~~~L~~L~L~~n~l~~~  567 (1005)
                      +++|.++++-++.++.+|+.||+++|-+.+--- .-+|.  ...|+.|.|.+|.+-.-
T Consensus       239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLws--Ls~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWS--LSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHH--HHHHHHHhhcCCccccC
Confidence            999999999999999999999999998764211 11222  24588889999988553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.06  E-value=2.7e-07  Score=102.41  Aligned_cols=129  Identities=32%  Similarity=0.338  Sum_probs=81.0

Q ss_pred             cccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEe
Q 047927          357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLD  436 (1005)
Q Consensus       357 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  436 (1005)
                      .|...+.++|.+. ..... +.-++.++.|+|++|+++..  ..+..++.|++|+|+.|.+. .++.+....+. |..|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence            5666677777665 22222 66677788888888887632  26677777788887777765 33333333333 66777


Q ss_pred             CCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeE
Q 047927          437 LSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAV  493 (1005)
Q Consensus       437 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~  493 (1005)
                      +++|.++..  ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+..
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            777766532  2355667777777777766655555556666667777777766543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=4.5e-07  Score=79.60  Aligned_cols=61  Identities=30%  Similarity=0.463  Sum_probs=28.7

Q ss_pred             CCCEEECCCCcCcccCchhhhcC-CCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927          869 SLCALNLSHNALTGSIPSLIGNL-REIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       869 ~L~~L~Ls~N~l~g~ip~~~~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  931 (1005)
                      .|+..+||+|.+. ..|..|... +.++.|+|++|.|+ .+|+.++.++.|+.+|+++|+|...
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~  115 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE  115 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc
Confidence            3344455555554 233333322 24455555555554 3444455555555555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=1.6e-06  Score=86.32  Aligned_cols=164  Identities=19%  Similarity=0.108  Sum_probs=76.6

Q ss_pred             ccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCC--Ccccc-Cc
Q 047927          377 WEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPI--PLSFF-EL  453 (1005)
Q Consensus       377 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~-~l  453 (1005)
                      +.++|.|+.|+++.|++...+...-....+|+.+.+.+..+.-..........+.+++|.++.|.+....  ..... --
T Consensus        93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s  172 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS  172 (418)
T ss_pred             HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence            3455555555555555543222111233445555555444332222222223334444444444221100  00000 11


Q ss_pred             CCCcEEECCCCcceeccc-hhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC---CCCCCcee
Q 047927          454 KNLKILLLSSNKFVGTIE-LDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN---LRKQTKLY  529 (1005)
Q Consensus       454 ~~L~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~---l~~l~~L~  529 (1005)
                      +.++.|....|...-... ...-.-++++..+-+..|.+.+.....-..-.+.+.-|.++.++|.++..   +..+++|.
T Consensus       173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~  252 (418)
T KOG2982|consen  173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLV  252 (418)
T ss_pred             hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhh
Confidence            345555555554321111 11123456777777777766655544333334445566777776665443   66677777


Q ss_pred             EEECcCCcCCC
Q 047927          530 HLDLSDNQISG  540 (1005)
Q Consensus       530 ~L~Ls~n~l~~  540 (1005)
                      .|.++++++..
T Consensus       253 dlRv~~~Pl~d  263 (418)
T KOG2982|consen  253 DLRVSENPLSD  263 (418)
T ss_pred             eeeccCCcccc
Confidence            77777776653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=2e-06  Score=85.70  Aligned_cols=195  Identities=19%  Similarity=0.231  Sum_probs=105.1

Q ss_pred             cccEEeCCCCcccCCCCCCc-cccCCcccEEEeccCcccccCCCCC---CCcceeeCcCCcCccCCCcchhcccCceEEE
Q 047927          553 SFNHLNLSHNLLVSLEQPYS-ISDLTSLSVLDLHSNQIQGKIPPLP---PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFF  628 (1005)
Q Consensus       553 ~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L  628 (1005)
                      .++.+||.+|.|++.....+ +.++|.|+.|+++.|++...|-..|   .+++.+.+.+..+.-.               
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~---------------  136 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT---------------  136 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh---------------
Confidence            34444444444444322211 4567888888888888875554332   2444444444333211               


Q ss_pred             EecCCcccccCChhhhccCCCCeEEccCccccc--cCCchhhhcCc--------ccccEEECCCCcCCccccCccCCCCC
Q 047927          629 SFSKNSLTGVIPESICNATNLLVLDLSYNYLSG--MIPTCLINMSD--------SQLGVLNLRRNNLNGTVSATFPANCS  698 (1005)
Q Consensus       629 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~--------~~L~~L~L~~n~l~~~~~~~~~~l~~  698 (1005)
                               .....+..++.++.|++|.|.+..  .-..+......        +.+..+.++-|++...       +++
T Consensus       137 ---------~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpn  200 (418)
T KOG2982|consen  137 ---------QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPN  200 (418)
T ss_pred             ---------hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------ccc
Confidence                     122344555666666666663321  00111111110        0222233333444433       346


Q ss_pred             ccEEeCCCCeecccC-cccccCCCCCCEEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccCCC----CCCCCCCC
Q 047927          699 LRTLDLNGNQLEGMV-PKSLANCSVLEILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNISCP----RYNVSWPM  772 (1005)
Q Consensus       699 L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~~~l~~  772 (1005)
                      +..+.+..|.+.... ...+..++.+--|+|+.|+|..... +.+..+++|..|.+++|++...+.+.    -.+..+++
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~  280 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK  280 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence            777778888776432 2456666777788888888875533 55777888888888888876554321    13567777


Q ss_pred             ccEEEc
Q 047927          773 LQIIDL  778 (1005)
Q Consensus       773 L~~L~l  778 (1005)
                      ++.|+=
T Consensus       281 v~vLNG  286 (418)
T KOG2982|consen  281 VQVLNG  286 (418)
T ss_pred             eEEecC
Confidence            777753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=6.3e-06  Score=58.85  Aligned_cols=36  Identities=42%  Similarity=0.648  Sum_probs=19.6

Q ss_pred             CCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCc
Q 047927          869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS  905 (1005)
Q Consensus       869 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~  905 (1005)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555666666665 34555556666666666666555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1.3e-05  Score=57.18  Aligned_cols=38  Identities=39%  Similarity=0.628  Sum_probs=32.7

Q ss_pred             CCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927          892 REIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG  930 (1005)
Q Consensus       892 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  930 (1005)
                      ++|++|++++|+|+ .+|..+++|++|++||+++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 567789999999999999999973

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=6.9e-05  Score=81.07  Aligned_cols=76  Identities=14%  Similarity=0.222  Sum_probs=44.1

Q ss_pred             hhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCC
Q 047927          667 LINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASR  746 (1005)
Q Consensus       667 ~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  746 (1005)
                      +..+.  +++.|++++|.++.. | .++  .+|++|.++++.-...+|+.+.  ++|+.|++++|.-...+|.      +
T Consensus        48 ~~~~~--~l~~L~Is~c~L~sL-P-~LP--~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------s  113 (426)
T PRK15386         48 IEEAR--ASGRLYIKDCDIESL-P-VLP--NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------S  113 (426)
T ss_pred             HHHhc--CCCEEEeCCCCCccc-C-CCC--CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------c
Confidence            34454  788888888877654 3 222  2688888877544445665442  5677777777732223443      3


Q ss_pred             CcEEecCCCc
Q 047927          747 LHVLILRSNN  756 (1005)
Q Consensus       747 L~~L~L~~N~  756 (1005)
                      |+.|++.++.
T Consensus       114 Le~L~L~~n~  123 (426)
T PRK15386        114 VRSLEIKGSA  123 (426)
T ss_pred             cceEEeCCCC
Confidence            5555555444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00013  Score=79.02  Aligned_cols=135  Identities=19%  Similarity=0.246  Sum_probs=64.7

Q ss_pred             CCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEcc
Q 047927          576 LTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLS  655 (1005)
Q Consensus       576 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls  655 (1005)
                      +.+++.|++++|.++ .+|..|.+++.|.++++.-...+|..+   ...|++|++++|.....+|      .+|+.|+++
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~  120 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPVLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESVRSLEIK  120 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCCCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------cccceEEeC
Confidence            345666666666444 334555556666665544333444322   3456666666663222333      245666666


Q ss_pred             CccccccCCchhhhcCcccccEEECCCCc-CC-ccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCC
Q 047927          656 YNYLSGMIPTCLINMSDSQLGVLNLRRNN-LN-GTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNN  731 (1005)
Q Consensus       656 ~N~l~~~~p~~~~~l~~~~L~~L~L~~n~-l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  731 (1005)
                      .+....     +..++. +|+.|.+.+++ .. ...|..++  ++|++|++++|... ..|..+.  .+|+.|+++.|
T Consensus       121 ~n~~~~-----L~~LPs-sLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        121 GSATDS-----IKNVPN-GLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CCCCcc-----cccCcc-hHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            554321     112222 45555554322 11 01111111  36777777776655 3343333  46677776665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.62  E-value=2.3e-05  Score=92.49  Aligned_cols=110  Identities=16%  Similarity=0.278  Sum_probs=70.4

Q ss_pred             CccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCC-CCccccCCCCCcEEECCCCCCCCCcchhccCCCC
Q 047927          160 LAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGP-VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSN  238 (1005)
Q Consensus       160 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~  238 (1005)
                      -.+|++|+++|..  .....|...+...+|+|+.|.+.+-.+... ......++++|..||+++.++...  ..++++++
T Consensus       121 r~nL~~LdI~G~~--~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn  196 (699)
T KOG3665|consen  121 RQNLQHLDISGSE--LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN  196 (699)
T ss_pred             HHhhhhcCccccc--hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence            3567777777743  335567777777778888888877554322 122344667777777777766544  55667777


Q ss_pred             CcEEEccCCCCCc-cCccccCCCCCCCEEeCCCCCC
Q 047927          239 LTSLYLSSCGLHG-AFPEKILQLPTLETLDLSYNEL  273 (1005)
Q Consensus       239 L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~  273 (1005)
                      |++|.+.+=.+.. ..-..+.++++|++||+|....
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            7777776665542 2223566777777777776643

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.57  E-value=4.9e-06  Score=87.13  Aligned_cols=317  Identities=19%  Similarity=0.170  Sum_probs=138.4

Q ss_pred             CCCCcc-cceeEECCCCCEEEEEcCCCCc--ccccCCCcccccc-cccceeecCCccCC-CCCCCCcccCCCCCcEEEcc
Q 047927           39 SNDCCT-WSGVDCDEAGRVIGLDLSEESI--SAGIDNSSSLFSL-KYLQSLNLAFNMFN-ATEIPSGLGNLTNLTTLNLS  113 (1005)
Q Consensus        39 ~~~~c~-w~gv~c~~~~~v~~L~L~~~~l--~~~~~~~~~l~~l-~~L~~L~Ls~~~~~-~~~lp~~l~~l~~L~~L~Ls  113 (1005)
                      ...||. |++-+-|. +-=.++||.....  .+.+. ...+.++ ..||.|.+.++.-. ...+-..-.+++++++|++.
T Consensus        95 ~a~~c~~~n~~AlD~-~~~q~idL~t~~rDv~g~VV-~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~  172 (483)
T KOG4341|consen   95 AAQCCTMWNKLALDG-SCWQHIDLFTFQRDVDGGVV-ENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALY  172 (483)
T ss_pred             HHHHHHHhhhhhhcc-ccceeeehhcchhcCCCcce-ehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhh
Confidence            456674 88755543 2234455543322  12110 1111112 45777777776432 22222334567777777777


Q ss_pred             cCC-CcCCCccccc-CCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCc
Q 047927          114 NAG-FAGQIPIQVS-GMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKL  191 (1005)
Q Consensus       114 ~n~-~~~~lp~~l~-~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L  191 (1005)
                      +|. +++..-..++ .+++|++|++..|.                               .++..   .+..+..-+++|
T Consensus       173 gc~~iTd~s~~sla~~C~~l~~l~L~~c~-------------------------------~iT~~---~Lk~la~gC~kL  218 (483)
T KOG4341|consen  173 GCKKITDSSLLSLARYCRKLRHLNLHSCS-------------------------------SITDV---SLKYLAEGCRKL  218 (483)
T ss_pred             cceeccHHHHHHHHHhcchhhhhhhcccc-------------------------------hhHHH---HHHHHHHhhhhH
Confidence            774 3322223332 46677777766542                               11111   122222333555


Q ss_pred             cEEEccCCC-CCCC-CCccccCCCCCcEEECCCCCCCCC--cchhccCCCCCcEEEccCCC-CCccCccc-cCCCCCCCE
Q 047927          192 QVLSLSGCF-LSGP-VDPSLSNLRSLSVIRLDMNDLYSP--VPEFLADFSNLTSLYLSSCG-LHGAFPEK-ILQLPTLET  265 (1005)
Q Consensus       192 ~~L~L~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~~~~~--~p~~l~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~  265 (1005)
                      +++++++|. +++. +..-..+++.++.+.+.++.-.+.  +-..=+.+..+.++++..|. +++.--.. -..+..|++
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            555555553 2221 111223444455554444321110  00011223445555555552 33221111 123556666


Q ss_pred             EeCCCCCCCC-CCCCccc-CCCCCcEEEccccc-ccccCchhh-ccCCCCCEEeecCCccCCC--CCccCCCCCCCcEEE
Q 047927          266 LDLSYNELLQ-GSLPDFH-QNLSLETLILSATN-FSGILPDSI-KNLKNLSRVEFYLCNFNGP--IPTSMSDLSQLVYLD  339 (1005)
Q Consensus       266 L~Ls~n~~~~-~~~~~~~-~~~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~  339 (1005)
                      |+.+++.... ..+..+. +..+|+.|.++.++ ++..--..+ .+++.|+.+++..+.....  +...-.+++.|+++.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            6666553211 1111121 25566666666654 232222222 2566677777766654321  222223466777777


Q ss_pred             CcCCcCccCC------CcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCC
Q 047927          340 MSFNHFSGPI------PSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHN  391 (1005)
Q Consensus       340 L~~n~l~~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  391 (1005)
                      +++|......      ........|+.+.++++.......-..+..+++|+.+++..+
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            7766532211      011223355566666655432222222444555555555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.41  E-value=0.00028  Score=67.04  Aligned_cols=104  Identities=29%  Similarity=0.310  Sum_probs=68.0

Q ss_pred             cCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEE
Q 047927          431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLS  510 (1005)
Q Consensus       431 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~  510 (1005)
                      ....+|+++|.+...  ..|..++.|..|.+.+|+++ .|.+..-..+++|+.|.+.+|.+..+.+..-...++.|++|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            355667777766522  24666777888888888877 666665666677777777777776665544444455677777


Q ss_pred             cCCccCcCCCC-----CCCCCceeEEECcCCc
Q 047927          511 LASCKLSAIPN-----LRKQTKLYHLDLSDNQ  537 (1005)
Q Consensus       511 L~~n~l~~l~~-----l~~l~~L~~L~Ls~n~  537 (1005)
                      +-+|.++.-+.     +..+++|+.||...-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            77776665554     5566777777766543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.36  E-value=8.9e-05  Score=87.60  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=75.2

Q ss_pred             cccceeecCCccCCCCCCCCccc-CCCCCcEEEcccCCCcCC-CcccccCCCCCcEEeCCCcccccCccccCCCChhhhh
Q 047927           80 KYLQSLNLAFNMFNATEIPSGLG-NLTNLTTLNLSNAGFAGQ-IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLL  157 (1005)
Q Consensus        80 ~~L~~L~Ls~~~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~-lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l  157 (1005)
                      .+||+||+++...-....|..++ .||.|++|.+++-.+... .-....++++|+.||+|++.++..          ..+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----------~GI  191 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----------SGI  191 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----------HHH
Confidence            46666666665432222344443 456777776666544322 122224566677777776654432          236


Q ss_pred             hcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCC--C----ccccCCCCCcEEECCCCCCCCCc
Q 047927          158 QNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPV--D----PSLSNLRSLSVIRLDMNDLYSPV  229 (1005)
Q Consensus       158 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~--~----~~l~~l~~L~~L~l~~n~~~~~~  229 (1005)
                      +++++|+.|.+.+-.+..  ...+..+..+ .+|+.||+|........  .    +.-..+++|+.||.++..+...+
T Consensus       192 S~LknLq~L~mrnLe~e~--~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLEFES--YQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             hccccHHHHhccCCCCCc--hhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            666677776666655543  2334445555 77777777765433221  1    11234778888888877665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.29  E-value=0.00049  Score=65.44  Aligned_cols=84  Identities=23%  Similarity=0.265  Sum_probs=50.2

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCC-CccCCCCCCCcEEE
Q 047927          261 PTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPI-PTSMSDLSQLVYLD  339 (1005)
Q Consensus       261 ~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~  339 (1005)
                      .+...+||++|.+  ...+.|..++.|.+|.+.+|+|+.+-|.--..+++|+.|.+.+|++.... -.-+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl--~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDL--RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccch--hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            3455666666655  34455666666777777777776665555455666677777666654211 12255566777777


Q ss_pred             CcCCcCc
Q 047927          340 MSFNHFS  346 (1005)
Q Consensus       340 L~~n~l~  346 (1005)
                      +-+|..+
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            6666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.04  E-value=0.0018  Score=60.06  Aligned_cols=123  Identities=18%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             chhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCC
Q 047927          617 DIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPAN  696 (1005)
Q Consensus       617 ~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l  696 (1005)
                      ..+..++.++.+.+.. .+...-...|..+++|+.+++.++ +.......|..+.  +++.+.+.+ .+.......|..+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~--~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK--SLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T--T-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc--ccccccccc-ccccccccccccc
Confidence            3344455666666653 344444555666666666666654 4433334455554  566666654 4444444556666


Q ss_pred             CCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCC
Q 047927          697 CSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRL  747 (1005)
Q Consensus       697 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  747 (1005)
                      ++|+.+++..+ +..+....|.++ .|+.+.+.. .++.+....|.++++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            66666666554 443444555555 666666554 3333444455555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.67  E-value=0.0019  Score=64.51  Aligned_cols=86  Identities=21%  Similarity=0.236  Sum_probs=47.8

Q ss_pred             CCCccEEeCCCCeecccCcccccCCCCCCEEECCCC--cCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCc
Q 047927          696 NCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNN--QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPML  773 (1005)
Q Consensus       696 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L  773 (1005)
                      +..|+.|++.+..++..  ..|-.+++|+.|++|.|  ++.+-.+.....+++|+++++++|++.- +..-..+..+.+|
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcch
Confidence            34455555555555532  33455566666666666  5555455555555666666666666642 2222334455666


Q ss_pred             cEEEccCCccc
Q 047927          774 QIIDLASNKFS  784 (1005)
Q Consensus       774 ~~L~ls~N~~~  784 (1005)
                      ..||+.+|.-+
T Consensus       119 ~~Ldl~n~~~~  129 (260)
T KOG2739|consen  119 KSLDLFNCSVT  129 (260)
T ss_pred             hhhhcccCCcc
Confidence            67777666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.66  E-value=0.0015  Score=65.23  Aligned_cols=88  Identities=23%  Similarity=0.295  Sum_probs=41.1

Q ss_pred             ccCCCCCcEEEcccC--CCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchh
Q 047927          101 LGNLTNLTTLNLSNA--GFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGI  178 (1005)
Q Consensus       101 l~~l~~L~~L~Ls~n--~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  178 (1005)
                      +-.+++|++|.++.|  ++.+.++.-..++++|++|+++.|+++.+       .-...+..+.+|..|++.++..+....
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-------stl~pl~~l~nL~~Ldl~n~~~~~l~d  133 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-------STLRPLKELENLKSLDLFNCSVTNLDD  133 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-------cccchhhhhcchhhhhcccCCcccccc
Confidence            334556666666666  44444444444556666666666654321       111224445555555555554433211


Q ss_pred             hHHHHHhccCCCccEEEc
Q 047927          179 EWCQALSSLVPKLQVLSL  196 (1005)
Q Consensus       179 ~~~~~l~~l~~~L~~L~L  196 (1005)
                       .-..+..+.++|++|+-
T Consensus       134 -yre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  134 -YREKVFLLLPSLKYLDG  150 (260)
T ss_pred             -HHHHHHHHhhhhccccc
Confidence             11222223355555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.00017  Score=71.64  Aligned_cols=100  Identities=26%  Similarity=0.333  Sum_probs=70.6

Q ss_pred             CCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccC-chhhccCCCCCEE
Q 047927          236 FSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGIL-PDSIKNLKNLSRV  314 (1005)
Q Consensus       236 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L  314 (1005)
                      +.+.+.|+..+|+++++  ....+++.|++|.||-|.|  ..+..+..+++|++|+|..|.|...- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45677788888888754  3456788888888888876  44566777888888888888877432 2345678888888


Q ss_pred             eecCCccCCCCCcc-----CCCCCCCcEEE
Q 047927          315 EFYLCNFNGPIPTS-----MSDLSQLVYLD  339 (1005)
Q Consensus       315 ~l~~n~~~~~~~~~-----l~~l~~L~~L~  339 (1005)
                      .|..|...+.-+..     +.-+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888777655432     34467777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.32  E-value=0.0082  Score=55.53  Aligned_cols=37  Identities=14%  Similarity=0.227  Sum_probs=12.6

Q ss_pred             hccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCC
Q 047927          232 FLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLS  269 (1005)
Q Consensus       232 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  269 (1005)
                      .|..+++|+.+.+..+ +.......+.++++++.+.+.
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             hccccccccccccccc-ccccceeeeeccccccccccc
Confidence            3444444444444432 322222333344444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.00045  Score=68.74  Aligned_cols=85  Identities=24%  Similarity=0.190  Sum_probs=43.7

Q ss_pred             CCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC---CCCCCceeEE
Q 047927          455 NLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN---LRKQTKLYHL  531 (1005)
Q Consensus       455 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~---l~~l~~L~~L  531 (1005)
                      +.+.|++.+|.+. .|  .....++.|++|.|+-|+|+++..   ...+..|++|+|+.|.|.++..   +.++++|+.|
T Consensus        20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            3444444444443 11  233444444444444444444332   1223335555555555555444   6777888888


Q ss_pred             ECcCCcCCCCCChh
Q 047927          532 DLSDNQISGEIPNW  545 (1005)
Q Consensus       532 ~Ls~n~l~~~~p~~  545 (1005)
                      .|..|.-.+.-+..
T Consensus        94 WL~ENPCc~~ag~n  107 (388)
T KOG2123|consen   94 WLDENPCCGEAGQN  107 (388)
T ss_pred             hhccCCcccccchh
Confidence            88888766655543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.07  E-value=0.0024  Score=37.74  Aligned_cols=19  Identities=53%  Similarity=0.815  Sum_probs=8.3

Q ss_pred             CCEEeCCCCcCcccCccccc
Q 047927          894 IESLDLSMNNLSGTIPAQLA  913 (1005)
Q Consensus       894 L~~LdLs~N~l~~~ip~~l~  913 (1005)
                      |++|||++|+|+ .+|++|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            344444444444 3444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.86  E-value=0.0033  Score=37.19  Aligned_cols=20  Identities=60%  Similarity=0.649  Sum_probs=10.8

Q ss_pred             CCEEECCCCcCcccCchhhhc
Q 047927          870 LCALNLSHNALTGSIPSLIGN  890 (1005)
Q Consensus       870 L~~L~Ls~N~l~g~ip~~~~~  890 (1005)
                      |++|||++|+|+ .||++|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 55555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.69  E-value=0.0023  Score=74.95  Aligned_cols=63  Identities=29%  Similarity=0.222  Sum_probs=30.5

Q ss_pred             CCCCCcEEECCCCC-CCCCcchhccC-CCCCcEEEccCCC-CCccCccc-cCCCCCCCEEeCCCCCC
Q 047927          211 NLRSLSVIRLDMND-LYSPVPEFLAD-FSNLTSLYLSSCG-LHGAFPEK-ILQLPTLETLDLSYNEL  273 (1005)
Q Consensus       211 ~l~~L~~L~l~~n~-~~~~~p~~l~~-l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~Ls~n~~  273 (1005)
                      .+++|+.++++++. ++...-..++. +++|++|.+.+|. +++..-.. ...++.|++|+++++..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            34555666665554 33222223332 5566666655554 34322222 23455666666666543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.31  E-value=0.002  Score=75.37  Aligned_cols=36  Identities=33%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             CCEEeCCCCccCCC-CCccccC-cCCCcEEECCCCcce
Q 047927          432 LDTLDLSDNNLEGP-IPLSFFE-LKNLKILLLSSNKFV  467 (1005)
Q Consensus       432 L~~L~L~~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l~  467 (1005)
                      ++.|+++.+..... .-..... +..++.+++.++...
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            66666666653311 1111111 566777888777654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.70  E-value=0.00076  Score=76.31  Aligned_cols=173  Identities=25%  Similarity=0.284  Sum_probs=80.1

Q ss_pred             hhhhhcCccCceeecCCccCCCchhhHHHHHhccC-CCccEEEccCCCCCCCC----CccccCCCCCcEEECCCCCCCC-
Q 047927          154 SGLLQNLAELRELYLDGVNISAPGIEWCQALSSLV-PKLQVLSLSGCFLSGPV----DPSLSNLRSLSVIRLDMNDLYS-  227 (1005)
Q Consensus       154 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~-~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~-  227 (1005)
                      ...+.....|+.|++++|.+.+.+...+....... ..+++|++..|.++...    ...+.....++.++++.|.+.. 
T Consensus       108 ~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~  187 (478)
T KOG4308|consen  108 AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL  187 (478)
T ss_pred             HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh
Confidence            34455555666666666666544444443332221 44555566555555432    2233344555555555554421 


Q ss_pred             ---Ccchhc----cCCCCCcEEEccCCCCCccC----ccccCCCCC-CCEEeCCCCCCCCCCCCcccCCCCCcEEEcccc
Q 047927          228 ---PVPEFL----ADFSNLTSLYLSSCGLHGAF----PEKILQLPT-LETLDLSYNELLQGSLPDFHQNLSLETLILSAT  295 (1005)
Q Consensus       228 ---~~p~~l----~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~-L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n  295 (1005)
                         .++..+    ....++++|.+++|.++...    ...+...+. +..|++..|.+.+....                
T Consensus       188 g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~----------------  251 (478)
T KOG4308|consen  188 GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVE----------------  251 (478)
T ss_pred             hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHH----------------
Confidence               011112    23445555555555544211    112222333 34445544443222111                


Q ss_pred             cccccCchhhccC-CCCCEEeecCCccCCCCC----ccCCCCCCCcEEECcCCcCc
Q 047927          296 NFSGILPDSIKNL-KNLSRVEFYLCNFNGPIP----TSMSDLSQLVYLDMSFNHFS  346 (1005)
Q Consensus       296 ~l~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~L~~n~l~  346 (1005)
                          ...+.+..+ ..+++++++.|.++..-.    ..+..++.++++.++.|.+.
T Consensus       252 ----~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  252 ----KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             ----HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence                112233333 455666666666654332    23445667777777777664

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.15  E-value=0.0029  Score=71.73  Aligned_cols=192  Identities=26%  Similarity=0.239  Sum_probs=114.3

Q ss_pred             cccceeecCCccCCCCC---CCCcccCCCCCcEEEcccCCCcCCCcccc----cCC-CCCcEEeCCCcccccCccccCCC
Q 047927           80 KYLQSLNLAFNMFNATE---IPSGLGNLTNLTTLNLSNAGFAGQIPIQV----SGM-TRLVTLDLSGMYFVRAPLKLENP  151 (1005)
Q Consensus        80 ~~L~~L~Ls~~~~~~~~---lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l----~~l-~~L~~L~ls~n~~~~~~~~~~~~  151 (1005)
                      ..++.|.|.+|.+....   +...+....+|..|++++|.+.+.--..+    ... ..|++|++..|.++...    ..
T Consensus        87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g----~~  162 (478)
T KOG4308|consen   87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG----AA  162 (478)
T ss_pred             hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc----hH
Confidence            33677777777765441   22445666777777887777753322222    222 34666777766654432    22


Q ss_pred             ChhhhhhcCccCceeecCCccCCCchhhHHH-HHhc---cCCCccEEEccCCCCCCCCC----ccccCCCC-CcEEECCC
Q 047927          152 NLSGLLQNLAELRELYLDGVNISAPGIEWCQ-ALSS---LVPKLQVLSLSGCFLSGPVD----PSLSNLRS-LSVIRLDM  222 (1005)
Q Consensus       152 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~---l~~~L~~L~L~~n~~~~~~~----~~l~~l~~-L~~L~l~~  222 (1005)
                      .+.+.+.....+++++++.|.+...+..... .+..   ...++++|.+++|.++...-    ..+...+. +..+++..
T Consensus       163 ~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~  242 (478)
T KOG4308|consen  163 PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS  242 (478)
T ss_pred             HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence            3445566677777788777766543333222 2222   23677788888777663211    22344444 66678887


Q ss_pred             CCCCCC----cchhccCC-CCCcEEEccCCCCCccC----ccccCCCCCCCEEeCCCCCCCC
Q 047927          223 NDLYSP----VPEFLADF-SNLTSLYLSSCGLHGAF----PEKILQLPTLETLDLSYNELLQ  275 (1005)
Q Consensus       223 n~~~~~----~p~~l~~l-~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~~~~  275 (1005)
                      |.+...    ....+..+ ..+++++++.|.++..-    ...+..++.++++.++.|.+..
T Consensus       243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            776543    22334444 67789999999887543    3445567899999999987654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.90  E-value=0.0038  Score=60.62  Aligned_cols=84  Identities=20%  Similarity=0.220  Sum_probs=73.9

Q ss_pred             cccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEE
Q 047927          843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLN  922 (1005)
Q Consensus       843 ~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~  922 (1005)
                      ....+.||++.|++. .....|.-++.|..||+|.|.+. ..|..++++..+..+++.+|..+ ..|-++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            355688999999987 45566777889999999999998 78999999999999999999998 7899999999999999


Q ss_pred             ccCCccc
Q 047927          923 LSYNHLV  929 (1005)
Q Consensus       923 ls~N~l~  929 (1005)
                      +-.|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999875

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.06  E-value=0.14  Score=27.98  Aligned_cols=12  Identities=58%  Similarity=0.714  Sum_probs=4.0

Q ss_pred             CCEEECCCCcCc
Q 047927          870 LCALNLSHNALT  881 (1005)
Q Consensus       870 L~~L~Ls~N~l~  881 (1005)
                      |+.|+|++|+|+
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.67  E-value=0.015  Score=56.72  Aligned_cols=82  Identities=18%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             CCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcE
Q 047927           54 GRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVT  133 (1005)
Q Consensus        54 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~  133 (1005)
                      .||++||++.+.+...   -..++.++.|..||++.|.+.  -+|..++....++++++..|..+ ..|.+.++++++++
T Consensus        42 kr~tvld~~s~r~vn~---~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNL---GKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             ceeeeehhhhhHHHhh---ccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            6899999999877642   356788889999999988774  37889999999999999888775 88999999999999


Q ss_pred             EeCCCccc
Q 047927          134 LDLSGMYF  141 (1005)
Q Consensus       134 L~ls~n~~  141 (1005)
                      +++..+.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            99888764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.75  E-value=0.25  Score=26.95  Aligned_cols=14  Identities=36%  Similarity=0.646  Sum_probs=5.1

Q ss_pred             cceEEcCCccCcCC
Q 047927          506 LTTLSLASCKLSAI  519 (1005)
Q Consensus       506 L~~L~L~~n~l~~l  519 (1005)
                      |+.|++++|+++++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            44444444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.21  E-value=0.38  Score=29.70  Aligned_cols=14  Identities=50%  Similarity=0.639  Sum_probs=7.1

Q ss_pred             CCCCEEeCCCCcCc
Q 047927          892 REIESLDLSMNNLS  905 (1005)
Q Consensus       892 ~~L~~LdLs~N~l~  905 (1005)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.21  E-value=0.38  Score=29.70  Aligned_cols=14  Identities=50%  Similarity=0.639  Sum_probs=7.1

Q ss_pred             CCCCEEeCCCCcCc
Q 047927          892 REIESLDLSMNNLS  905 (1005)
Q Consensus       892 ~~L~~LdLs~N~l~  905 (1005)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555555

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.45  E-value=0.27  Score=29.66  Aligned_cols=14  Identities=43%  Similarity=0.598  Sum_probs=5.1

Q ss_pred             CCCEEECCCCcCcc
Q 047927          869 SLCALNLSHNALTG  882 (1005)
Q Consensus       869 ~L~~L~Ls~N~l~g  882 (1005)
                      +|++|+|++|+|+.
T Consensus         3 ~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    3 NLETLDLSNNQITD   16 (24)
T ss_dssp             T-SEEE-TSSBEHH
T ss_pred             CCCEEEccCCcCCH
Confidence            34444444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.40  E-value=0.78  Score=28.25  Aligned_cols=19  Identities=42%  Similarity=0.471  Sum_probs=10.4

Q ss_pred             CCCCEEECCCCcCCCCcch
Q 047927          721 SVLEILDLGNNQFDDTFPC  739 (1005)
Q Consensus       721 ~~L~~L~Ls~N~l~~~~p~  739 (1005)
                      ++|+.|+|++|+++...+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666544333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.40  E-value=0.78  Score=28.25  Aligned_cols=19  Identities=42%  Similarity=0.471  Sum_probs=10.4

Q ss_pred             CCCCEEECCCCcCCCCcch
Q 047927          721 SVLEILDLGNNQFDDTFPC  739 (1005)
Q Consensus       721 ~~L~~L~Ls~N~l~~~~p~  739 (1005)
                      ++|+.|+|++|+++...+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666544333

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.64  E-value=0.17  Score=30.52  Aligned_cols=20  Identities=30%  Similarity=0.436  Sum_probs=10.5

Q ss_pred             CCCCEEeCCCCcCcccCccc
Q 047927          892 REIESLDLSMNNLSGTIPAQ  911 (1005)
Q Consensus       892 ~~L~~LdLs~N~l~~~ip~~  911 (1005)
                      ++|+.|||++|+|++..+..
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            45666666666666554433

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.14  E-value=0.19  Score=48.41  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=14.5

Q ss_pred             CcEEEccCCCCCccCccccCCCCCCCEEeCCCC
Q 047927          239 LTSLYLSSCGLHGAFPEKILQLPTLETLDLSYN  271 (1005)
Q Consensus       239 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  271 (1005)
                      ++.++-+++.|..+.-+.+..++.++.|.+.+|
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            344444444444333334444444444444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.56  E-value=0.37  Score=46.56  Aligned_cols=41  Identities=34%  Similarity=0.469  Sum_probs=22.3

Q ss_pred             HHHHhccCCCccEEEccCCC-CCCCCCccccCCCCCcEEECC
Q 047927          181 CQALSSLVPKLQVLSLSGCF-LSGPVDPSLSNLRSLSVIRLD  221 (1005)
Q Consensus       181 ~~~l~~l~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~  221 (1005)
                      +..+....++|+.|++++|. |++..-..+.++++|+.|.+.
T Consensus       143 L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  143 LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            44444455777777777664 444333444455555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1005
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-38
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-38
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		6e-16
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-15
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-05
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		1e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  156 bits (395), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 199/738 (26%), Positives = 305/738 (41%), Gaps = 114/738 (15%)
Query: 271 NELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFY-----LCNFNGPI 325
           N  + GS+  F  + SL +L LS  + SG +  ++ +L + S ++F        +F G +
Sbjct: 86  NSHINGSVSGFKCSASLTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKV 144
Query: 326 PTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRN----LAYLDLSYNIFTGGISSIGWEQLL 381
              +  L+ L  LD+S N  SG      +  +    L +L +S N  +G +      + +
Sbjct: 145 SGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCV 200
Query: 382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIXXXXXXXXXXXXXXXXX 441
           NL  +D+S NN    IP  L +   +QHL ++ N+  G  +                   
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR------------------ 241
Query: 442 XEGPIPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYC 501
                                           AI     L  L++S N+        V  
Sbjct: 242 --------------------------------AISTCTELKLLNISSNQF-------VGP 262
Query: 502 FPPL----LTTLSLASCKLSA-IPNLRKQT--KLYHLDLSDNQISGEIPNWLWKIGKDSF 554
            PPL    L  LSLA  K +  IP+        L  LDLS N   G +P +    G  S 
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF---GSCSL 319
Query: 555 XXXXXXXXXXXXXEQPY-SISDLTSLSVLDLHSNQIQGKIPP----LPPNAAYVDYSGNN 609
                        E P  ++  +  L VLDL  N+  G++P     L  +   +D S NN
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 610 FTSSI-PVDIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLI 668
           F+  I P                 N  TG IP ++ N + L+ L LS+NYLSG IP+ L 
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 669 NMSDSQXXXXXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728
           ++S  +                  +    +L TL L+ N L G +P  L+NC+ L  + L
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVK--TLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788
            NN+     P W+     L +L L +N+F GNI  P        L  +DL +N F+G +P
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 789 -----------------QKWLLNLEAMMVDEGRSQSELKHLQ-YRFLNLSQAYYQDAITV 830
                            ++++      M  E      L   Q  R   L++   ++   +
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 831 TIKGLEMKLAKILNIFTS---IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887
           T +      +   +   S   +D S N   G IP+E+G +  L  LNL HN ++GSIP  
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFE 947
           +G+LR +  LDLS N L G IP  +++L  L+ ++LS N+L G IP   Q ++F    F 
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Query: 948 GNDRLWGPPLNVC-PTNS 964
            N  L G PL  C P+N+
Sbjct: 736 NNPGLCGYPLPRCDPSNA 753

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  155 bits (393), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 199/738 (26%), Positives = 305/738 (41%), Gaps = 114/738 (15%)
Query: 271 NELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFY-----LCNFNGPI 325
           N  + GS+  F  + SL +L LS  + SG +  ++ +L + S ++F        +F G +
Sbjct: 83  NSHINGSVSGFKCSASLTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKV 141
Query: 326 PTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRN----LAYLDLSYNIFTGGISSIGWEQLL 381
              +  L+ L  LD+S N  SG      +  +    L +L +S N  +G +      + +
Sbjct: 142 SGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCV 197
Query: 382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIXXXXXXXXXXXXXXXXX 441
           NL  +D+S NN    IP  L +   +QHL ++ N+  G  +                   
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR------------------ 238
Query: 442 XEGPIPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYC 501
                                           AI     L  L++S N+        V  
Sbjct: 239 --------------------------------AISTCTELKLLNISSNQF-------VGP 259
Query: 502 FPPL----LTTLSLASCKLSA-IPNLRKQT--KLYHLDLSDNQISGEIPNWLWKIGKDSF 554
            PPL    L  LSLA  K +  IP+        L  LDLS N   G +P +    G  S 
Sbjct: 260 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF---GSCSL 316
Query: 555 XXXXXXXXXXXXXEQPY-SISDLTSLSVLDLHSNQIQGKIPP----LPPNAAYVDYSGNN 609
                        E P  ++  +  L VLDL  N+  G++P     L  +   +D S NN
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 610 FTSSI-PVDIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLI 668
           F+  I P                 N  TG IP ++ N + L+ L LS+NYLSG IP+ L 
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 669 NMSDSQXXXXXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728
           ++S  +                  +    +L TL L+ N L G +P  L+NC+ L  + L
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVK--TLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788
            NN+     P W+     L +L L +N+F GNI  P        L  +DL +N F+G +P
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 789 -----------------QKWLLNLEAMMVDEGRSQSELKHLQ-YRFLNLSQAYYQDAITV 830
                            ++++      M  E      L   Q  R   L++   ++   +
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 831 TIKGLEMKLAKILNIFTS---IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887
           T +      +   +   S   +D S N   G IP+E+G +  L  LNL HN ++GSIP  
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFE 947
           +G+LR +  LDLS N L G IP  +++L  L+ ++LS N+L G IP   Q ++F    F 
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
Query: 948 GNDRLWGPPLNVC-PTNS 964
            N  L G PL  C P+N+
Sbjct: 733 NNPGLCGYPLPRCDPSNA 750

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 117/262 (44%), Gaps = 54/262 (20%)
Query: 190 KLQVLSLSGCFLSGP--VDPSLSNLRSLSVIRLD-MNDLYSPVPEFLADFSNLTSLYLSS 246
           ++  L LSG  L  P  +  SL+NL  L+ + +  +N+L  P+P  +A  + L  LY++ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 247 CGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIK 306
             + GA P+ + Q+ TL TLD SYN L                        SG LP SI 
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNAL------------------------SGTLPPSIS 146
Query: 307 NLKNLSRVEFYLCNFNGPIPTSMSDLSQL-VYLDMSFNHFSGPIPSLHMFRNLAYLDLSY 365
           +L NL  + F     +G IP S    S+L   + +S N  +G IP      NLA++DLS 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 366 NIFTGGIS------------------------SIGWEQLLNLFHVDLSHNNLGGSIPQSL 401
           N+  G  S                         +G  +  NL  +DL +N + G++PQ L
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGL 264
Query: 402 FELPMVQHLLLADNQFDGHVTE 423
            +L  +  L ++ N   G + +
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 114/273 (41%), Gaps = 23/273 (8%)
Query: 699 LRTLDLNGNQLEGM--VPKSLANCSVLEILDLGN-NQFDDTFPCWVKNASRLHVLILRSN 755
           +  LDL+G  L     +P SLAN   L  L +G  N      P  +   ++LH L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 756 NFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKW--LLNLEAMMVDEGRSQSELKHLQ 813
           N  G I  P +      L  +D + N  SG LP     L NL  +  D  R    +    
Sbjct: 112 NVSGAI--PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 814 YRF------LNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLL 867
             F      + +S+      I  T   L +           +D SRN  EG      G  
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAF---------VDLSRNMLEGDASVLFGSD 220
Query: 868 QSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNH 927
           ++   ++L+ N+L   +   +G  + +  LDL  N + GT+P  L  L FL  LN+S+N+
Sbjct: 221 KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 928 LVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVC 960
           L G IP    LQ F  +++  N  L G PL  C
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 119/280 (42%), Gaps = 18/280 (6%)
Query: 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLIL 752
           F   C LR +  +   LE  VPK L   + L  LDL NN+  +      KN   LH LIL
Sbjct: 27  FRCQCHLRVVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLIL 83
Query: 753 RSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHL 812
             NN    IS P        L+ + L+ N+    LP+K    L+ + V E       K +
Sbjct: 84  -INNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 813 QYRFLNLSQAYYQDAITVTIK--GLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL 870
              F  L+Q    +  T  +K  G+E    + +   + I  +  N    IP+  GL  SL
Sbjct: 141 ---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSL 194
Query: 871 CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930
             L+L  N +T    + +  L  +  L LS N++S      LA+   L  L+L+ N LV 
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253
Query: 931 RIPTSTQLQSFLATSFEGNDRLWGPPLN-VCPT--NSSKA 967
           ++P       ++   +  N+ +     N  CP   N+ KA
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 119/280 (42%), Gaps = 18/280 (6%)
Query: 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLIL 752
           F   C LR +  +   LE  VPK L   + L  LDL NN+  +      KN   LH LIL
Sbjct: 27  FRCQCHLRVVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLIL 83
Query: 753 RSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHL 812
             NN    IS P        L+ + L+ N+    LP+K    L+ + V E       K +
Sbjct: 84  -INNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 813 QYRFLNLSQAYYQDAITVTIK--GLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL 870
              F  L+Q    +  T  +K  G+E    + +   + I  +  N    IP+  GL  SL
Sbjct: 141 ---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSL 194
Query: 871 CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930
             L+L  N +T    + +  L  +  L LS N++S      LA+   L  L+L+ N LV 
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253
Query: 931 RIPTSTQLQSFLATSFEGNDRLWGPPLN-VCPT--NSSKA 967
           ++P       ++   +  N+ +     N  CP   N+ KA
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 30/252 (11%)
Query: 690 SATFPANCSLRTLDLNGNQLE-GMVPKSLANCSVLEILDLGNNQFDDTFPC--WVKNASR 746
           +A+FP   SLR L + GN  +  +  + L     L+ LDL ++  + +  C   +KN   
Sbjct: 320 AASFP---SLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRH 376
Query: 747 LHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQK--------WLLNLEAM 798
           L  L L  N   G +    +    P L+++D+A      + P           +LNL   
Sbjct: 377 LQYLNLSYNEPLG-LEDQAFK-ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHC 434
Query: 799 MVDEGRSQSELKHLQ-YRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS---IDFSRN 854
           ++D   +Q  L  LQ  R LNL    +QD        L+M  +  + I +S   +   + 
Sbjct: 435 LLDTS-NQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQ 493
Query: 855 NFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLAS 914
            F G        L+++  L+LSHN+LTG     + +L+ +  L+++ NN+    P  L +
Sbjct: 494 AFHG--------LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPA 544
Query: 915 LNFLSVLNLSYN 926
           L+  S++NLS+N
Sbjct: 545 LSQQSIINLSHN 556

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1005
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-140
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-73
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-78
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-69
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-44
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-54
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-50
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-12
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  547 bits (1413), Expect = 0.0
 Identities = 216/773 (27%), Positives = 326/773 (42%), Gaps = 103/773 (13%)

Query: 237 SNLTSLYLSSCGLH---GAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
             +TS+ LSS  L+    A    +L L  LE+L LS + +  GS+  F  + SL +L LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSGFKCSASLTSLDLS 108

Query: 294 ATNFSGILPD--SIKNLKNLSRVEFYLCNFNGPIPTS-MSDLSQLVYLDMSFNHFSGPIP 350
             + SG +    S+ +   L  +       + P   S    L+ L  LD+S N  SG   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 351 S----LHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPM 406
                      L +L +S N  +G +  +   + +NL  +D+S NN    IP  L +   
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD-VS--RCVNLEFLDVSSNNFSTGIP-FLGDCSA 224

Query: 407 VQHLLLADNQFDGHV-TEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNK 465
           +QHL ++ N+  G     IS  +   L  L++S N   GPIP     LK+L+ L L+ NK
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTE--LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280

Query: 466 FVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LRK 524
           F G I          L  LDLS N      G+                     +P     
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFY---GA---------------------VPPFFGS 316

Query: 525 QTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDL 584
            + L  L LS N  SGE+P                            ++  +  L VLDL
Sbjct: 317 CSLLESLALSSNNFSGELPMD--------------------------TLLKMRGLKVLDL 350

Query: 585 HSNQIQGKIPP----LPPNAAYVDYSGNNFTSSIPVDIGSFMSLSI-FFSFSKNSLTGVI 639
             N+  G++P     L  +   +D S NNF+  I  ++      ++       N  TG I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSL 699
           P ++ N + L+ L LS+NYLSG IP+ L ++S  +L  L L  N L G +        +L
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS--KLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 700 RTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFG 759
            TL L+ N L G +P  L+NC+ L  + L NN+     P W+     L +L L +N+F G
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 760 NISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQY----- 814
           NI  P        L  +DL +N F+G +P   +      +     +     +++      
Sbjct: 529 NI--PAELGDCRSLIWLDLNTNLFNGTIP-AAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585

Query: 815 -----------------RFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFE 857
                            +   LS     +  +    G              +D S N   
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

Query: 858 GPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNF 917
           G IP+E+G +  L  LNL HN ++GSIP  +G+LR +  LDLS N L G IP  +++L  
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 918 LSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNSSKALPS 970
           L+ ++LS N+L G IP   Q ++F    F  N  L G PL  C  +++     
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH 758

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  437 bits (1126), Expect = e-140
 Identities = 200/784 (25%), Positives = 312/784 (39%), Gaps = 96/784 (12%)

Query: 5   SGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEE 64
             Q    +   L+  K  L   + +      WS + + CT+ GV C    +V  +DLS +
Sbjct: 6   PSQSLYREIHQLISFKDVLPDKNLLP----DWSSNKNPCTFDGVTCR-DDKVTSIDLSSK 60

Query: 65  SISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQ 124
            ++ G                           + S L +LT L +L LSN+   G +   
Sbjct: 61  PLNVGFS------------------------AVSSSLLSLTGLESLFLSNSHINGSVS-G 95

Query: 125 VSGMTRLVTLDLSGMYFVRA-PLKLENPNLSGL------------------LQNLAELRE 165
                 L +LDLS               + SGL                     L  L  
Sbjct: 96  FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155

Query: 166 LYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDL 225
           L L   +IS   +           +L+ L++SG  +SG V   +S   +L  + +  N+ 
Sbjct: 156 LDLSANSISGANVVGWVLSDGC-GELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNF 212

Query: 226 YSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL 285
            + +P  L D S L  L +S   L G F   I     L+ L++S N    G +P      
Sbjct: 213 STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPLPLK- 269

Query: 286 SLETLILSATNFSGILPDSIK-NLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNH 344
           SL+ L L+   F+G +PD +      L+ ++    +F G +P      S L  L +S N+
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 345 FSGPIP--SLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLF 402
           FSG +P  +L   R L  LDLS+N F+G +         +L  +DLS NN  G I  +L 
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389

Query: 403 ELPM--VQHLLLADNQFDGHV-TEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKIL 459
           + P   +Q L L +N F G +   +SN S   L +L LS N L G IP S   L  L+ L
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSE--LVSLHLSFNYLSGTIPSSLGSLSKLRDL 447

Query: 460 LLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAI 519
            L  N   G I    +  ++ L  L L +N L    G      P       L++C     
Sbjct: 448 KLWLNMLEGEI-PQELMYVKTLETLILDFNDL---TGE----IPS-----GLSNC----- 489

Query: 520 PNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSL 579
                 T L  + LS+N+++GEIP W+ ++   +   L LS+N   S   P  + D  SL
Sbjct: 490 ------TNLNWISLSNNRLTGEIPKWIGRLE--NLAILKLSNNSF-SGNIPAELGDCRSL 540

Query: 580 SVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLS-IFFSFSKNSLTGV 638
             LDL++N   G IP      +    + N       V I +         + +     G+
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599

Query: 639 IPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANC- 697
             E +   +     +++     G       N     +  L++  N L+G +      +  
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN--GSMMFLDMSYNMLSGYIPKEI-GSMP 656

Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
            L  L+L  N + G +P  + +   L ILDL +N+ D   P  +   + L  + L +NN 
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 758 FGNI 761
            G I
Sbjct: 717 SGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  256 bits (656), Expect = 5e-73
 Identities = 141/497 (28%), Positives = 207/497 (41%), Gaps = 59/497 (11%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           L L+E   +  I       +   L  L+L+ N F    +P   G+ + L +L LS+  F+
Sbjct: 274 LSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFS 331

Query: 119 GQIPIQV-SGMTRLVTLDLSGMYFVRAPLKLENPNLSG-----LLQNLAELRELYLDGVN 172
           G++P+     M  L  LDLS            N   SG     L    A L  L L   N
Sbjct: 332 GELPMDTLLKMRGLKVLDLSF-----------N-EFSGELPESLTNLSASLLTLDLSSNN 379

Query: 173 ISAPGI--EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVP 230
            S P I    CQ   +    LQ L L     +G + P+LSN   L  + L  N L   +P
Sbjct: 380 FSGP-ILPNLCQNPKN---TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 231 EFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL-SLET 289
             L   S L  L L    L G  P++++ + TLETL L +N  L G +P    N  +L  
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNW 494

Query: 290 LILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPI 349
           + LS    +G +P  I  L+NL+ ++    +F+G IP  + D   L++LD++ N F+G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 350 PSLHMFRNLAYLDLSYNIFTGGI-SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQ 408
           P+       +   ++ N   G     I  + +    H   +     G   + L  L    
Sbjct: 555 PA--AMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 409 HLLLADNQFDGHV-TEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFV 467
              +    + GH      N  S  +  LD+S N L G IP     +  L IL L  N   
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGS--MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 468 GTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTK 527
           G+I  D +  LR L  LDLS N+L    G      P  ++ L++                
Sbjct: 670 GSI-PDEVGDLRGLNILDLSSNKL---DGR----IPQAMSALTM---------------- 705

Query: 528 LYHLDLSDNQISGEIPN 544
           L  +DLS+N +SG IP 
Sbjct: 706 LTEIDLSNNNLSGPIPE 722

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  315 bits (810), Expect = 2e-95
 Identities = 132/691 (19%), Positives = 246/691 (35%), Gaps = 70/691 (10%)

Query: 262 TLETLDLSYNELLQGSLPDFHQNL--SLETLILSATNFSGILPDSIKNLKNLSRVEFYLC 319
           + E  D S+ +L    +PD   +L  ++  L L+      +   +      L+ ++    
Sbjct: 5   SHEVADCSHLKL--TQVPD---DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 320 NFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTGGISSIGWE 378
             +   P     L  L  L++  N  S     +     NL  L L  N     I +  + 
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFV 118

Query: 379 QLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG-HVTEISNASSSLLDTLDL 437
           +  NL  +DLSHN L  +   +  +L  +Q LLL++N+       E+   ++S L  L+L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 438 SDNNLEGPIPLSFFELKNLKILLLSSNKFVGTI--ELDAIQRLRNLFRLDLSYNRLAVVA 495
           S N ++   P  F  +  L  L L++ +   ++  +L       ++  L LS ++L+  +
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 496 GSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFN 555
            ++   F  L                  K T L  LDLS N ++    +    +      
Sbjct: 239 NTT---FLGL------------------KWTNLTMLDLSYNNLNVVGNDSFAWL--PQLE 275

Query: 556 HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIP 615
           +  L +N +  L   +S+  L ++  L+L  +  +               S  +      
Sbjct: 276 YFFLEYNNIQHLF-SHSLHGLFNVRYLNLKRSFTKQ------------SISLASLPKIDD 322

Query: 616 VDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPT--CLINMSDS 673
                   L    +   N + G+         NL  L LS ++ S    T    ++++ S
Sbjct: 323 FSFQWLKCLE-HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKS-LANCSVLEILDLGNNQ 732
            L +LNL +N ++   S  F     L  LDL  N++   +          +  + L  N+
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 733 FDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWL 792
           +             L  L+LR        S P        L I+DL++N  +  +    L
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDML 500

Query: 793 LNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFS 852
             LE +                  L+L              G  +   K L+    ++  
Sbjct: 501 EGLEKL----------------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 853 RNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQL 912
            N F+    E    L  L  ++L  N L     S+  N   ++SL+L  N ++       
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 913 A-SLNFLSVLNLSYNHLVGRIPTSTQLQSFL 942
             +   L+ L++ +N       +     +++
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  291 bits (747), Expect = 2e-86
 Identities = 150/688 (21%), Positives = 242/688 (35%), Gaps = 79/688 (11%)

Query: 105 TNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELR 164
            +    + S+     Q+P  +   T +  L+L+     R P        +      ++L 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLP--------AANFTRYSQLT 52

Query: 165 ELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND 224
            L +    IS    E CQ L    P L+VL+L    LS   D + +   +L+ + L  N 
Sbjct: 53  SLDVGFNTISKLEPELCQKL----PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

Query: 225 LYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL--LQGSLPDFH 282
           +            NL +L LS  GL        +QL  L+ L LS N++  L+    D  
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168

Query: 283 QNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSD---LSQLVYLD 339
            N SL+ L LS+       P     +  L  +          +   +      + +  L 
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 340 MSFNHFSGPIPSLHM---FRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGS 396
           +S +  S    +  +   + NL  LDLSYN     + +  +  L  L +  L +NN+   
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 397 IPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNL 456
              SL  L  V++L L  +                     +S  +L      SF  LK L
Sbjct: 288 FSHSLHGLFNVRYLNLKRS----------------FTKQSISLASLPKIDDFSFQWLKCL 331

Query: 457 KILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL---AVVAGSSVYCFPPLLTTLSLAS 513
           + L +  N   G I+ +    L NL  L LS +      +   + V      L  L+L  
Sbjct: 332 EHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 514 CKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPY 571
            K+S I +        L  LDL  N+I  E+    W+ G ++   + LS+N  + L    
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR-GLENIFEIYLSYNKYLQLT-RN 448

Query: 572 SISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLS--IFFS 629
           S + + SL  L L    ++                       +      F  L       
Sbjct: 449 SFALVPSLQRLMLRRVALKN----------------------VDSSPSPFQPLRNLTILD 486

Query: 630 FSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSD------SQLGVLNLRRN 683
            S N++  +  + +     L +LDL +N L+ +                S L +LNL  N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 684 NLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKN 743
             +      F     L+ +DL  N L  +      N   L+ L+L  N            
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 744 A-SRLHVLILRSNNFFGNISCPRYNVSW 770
           A   L  L +R N F        + V+W
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  278 bits (712), Expect = 1e-81
 Identities = 136/657 (20%), Positives = 226/657 (34%), Gaps = 81/657 (12%)

Query: 79  LKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSG 138
              +  LNL  N        +     + LT+L++     +   P     +  L  L+L  
Sbjct: 24  PTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 139 MYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSG 198
               +                   L EL+L   +I    I+           L  L LS 
Sbjct: 83  NELSQLS--------DKTFAFCTNLTELHLMSNSIQ--KIKN-NPFVKQ-KNLITLDLSH 130

Query: 199 CFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSN--LTSLYLSSCGLHGAFPEK 256
             LS     +   L +L  + L  N + +   E L  F+N  L  L LSS  +    P  
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 257 ILQLPTLETLDLSYNEL---LQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLK--NL 311
              +  L  L L+  +L   L   L     N S+  L LS +  S     +   LK  NL
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250

Query: 312 SRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTG 370
           + ++    N N     S + L QL Y  + +N+       SLH   N+ YL+L  +    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 371 GISSIG--------WEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVT 422
            IS           ++ L  L H+++  N++ G        L  +++L L+++       
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 423 EI---SNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLR 479
                 + + S L  L+L+ N +      +F  L +L++L L  N+    +     + L 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 480 NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN----LRKQTKLYHLDLSD 535
           N+F + LSYN+   +  +S     P L  L L    L  + +     +    L  LDLS+
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALV-PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 536 NQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP 595
           N I+    + L                             L  L +LDL  N +      
Sbjct: 490 NNIANINDDML---------------------------EGLEKLEILDLQHNNLA----- 517

Query: 596 LPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLS 655
                       +         +     L I  +   N    +  E   +   L ++DL 
Sbjct: 518 --------RLWKHANPGGPIYFLKGLSHLHI-LNLESNGFDEIPVEVFKDLFELKIIDLG 568

Query: 656 YNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANC-SLRTLDLNGNQLEG 711
            N L+ +  +   N     L  LNL++N +       F     +L  LD+  N  + 
Sbjct: 569 LNNLNTLPASVFNNQ--VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  244 bits (625), Expect = 2e-69
 Identities = 122/590 (20%), Positives = 209/590 (35%), Gaps = 63/590 (10%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           L+L    +S   D +        L  L+L  N        +      NL TL+LS+ G +
Sbjct: 78  LNLQHNELSQLSDKT--FAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLS 134

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAP--------------LKLENPNLSGL----LQNL 160
                    +  L  L LS                      L+L +  +          +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 161 AELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLR--SLSVI 218
             L  L+L+ V +     E      +    ++ LSLS   LS   + +   L+  +L+++
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 219 RLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSL 278
            L  N+L     +  A    L   +L    +   F   +  L  +  L+L  +       
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS------- 306

Query: 279 PDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYL 338
                        +S  +   I   S + LK L  +     +  G      + L  L YL
Sbjct: 307 --------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358

Query: 339 DMSFNHFSGPIPSLHMFRNLA-----YLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNL 393
            +S +  S    +   F +LA      L+L+ N  +  I S  +  L +L  +DL  N +
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-KIESDAFSWLGHLEVLDLGLNEI 417

Query: 394 GGSIPQSLFE-LPMVQHLLLADNQFDG-HVTEISNASSSLLDTLDLSDNNLEG--PIPLS 449
           G  +    +  L  +  + L+ N++        +   S  L  L L    L+     P  
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS--LQRLMLRRVALKNVDSSPSP 475

Query: 450 FFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL---- 505
           F  L+NL IL LS+N      + D ++ L  L  LDL +N LA +   +    P      
Sbjct: 476 FQPLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 506 ---LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLS 560
              L  L+L S     IP    +   +L  +DL  N ++    +      + S   LNL 
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF--NNQVSLKSLNLQ 592

Query: 561 HNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNF 610
            NL+ S+E+        +L+ LD+  N        +     +++ +  N 
Sbjct: 593 KNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI 642

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (400), Expect = 4e-40
 Identities = 78/429 (18%), Positives = 145/429 (33%), Gaps = 69/429 (16%)

Query: 531 LDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
            D S  +++ ++P+ L      +   LNL+HN L  L    + +  + L+ LD+  N I 
Sbjct: 9   ADCSHLKLT-QVPDDLPT----NITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTIS 62

Query: 591 GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLS--IFFSFSKNSLTGVIPESICNATN 648
              P                             L      +   N L+ +  ++    TN
Sbjct: 63  KLEP------------------------ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98

Query: 649 LLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQ 708
           L  L L  N +  +     +      L  L+L  N L+ T   T     +L+ L L+ N+
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQK--NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 709 LEGMVPKSLA--NCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNI-SCPR 765
           ++ +  + L     S L+ L+L +NQ  +  P       RL  L L +     ++     
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 766 YNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQ 825
             ++   ++ + L++++ S        L L+              +L    L+LS     
Sbjct: 217 LELANTSIRNLSLSNSQLST-TSNTTFLGLK------------WTNLTM--LDLSYNNLN 261

Query: 826 DAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHN------- 878
                +   L                  NN +      +  L ++  LNL  +       
Sbjct: 262 VVGNDSFAWLPQ--------LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

Query: 879 --ALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTST 936
             +L          L+ +E L++  N++ G        L  L  L+LS +    R  T+ 
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373

Query: 937 QLQSFLATS 945
              S   + 
Sbjct: 374 TFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (251), Expect = 9e-22
 Identities = 62/335 (18%), Positives = 102/335 (30%), Gaps = 79/335 (23%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           L+L++  IS  I  S +   L +L+ L+L  N             L N+  + LS   + 
Sbjct: 386 LNLTKNKIS-KI-ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGI 178
                  + +  L  L L                L  +  + +  + L            
Sbjct: 444 QLTRNSFALVPSLQRLMLRR-----------V-ALKNVDSSPSPFQPL------------ 479

Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSN 238
                       L +L LS   ++   D  L  L  L ++ L  N+L             
Sbjct: 480 ----------RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL------------- 516

Query: 239 LTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFS 298
                L      G     +  L  L  L+L  N                         F 
Sbjct: 517 ---ARLWKHANPGGPIYFLKGLSHLHILNLESN------------------------GFD 549

Query: 299 GILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSL--HMFR 356
            I  +  K+L  L  ++  L N N    +  ++   L  L++  N  +     +    FR
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 357 NLAYLDLSYNIFTGGISSIGW-EQLLNLFHVDLSH 390
           NL  LD+ +N F     SI W    +N  H ++  
Sbjct: 610 NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 2e-12
 Identities = 42/238 (17%), Positives = 63/238 (26%), Gaps = 78/238 (32%)

Query: 696 NCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN 755
             S    D +  +L   VP  L   + + +L+L +NQ              L  L     
Sbjct: 3   TVSHEVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQ--------------LRRLP---A 42

Query: 756 NFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYR 815
             F              L  +D+  N  S  L  +    L                L+  
Sbjct: 43  ANFTRY---------SQLTSLDVGFNTISK-LEPELCQKL--------------PMLKV- 77

Query: 816 FLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNL 875
            LNL                                  N       +      +L  L+L
Sbjct: 78  -LNLQ--------------------------------HNELSQLSDKTFAFCTNLTELHL 104

Query: 876 SHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIP 933
             N++     +     + + +LDLS N LS T       L  L  L LS N +     
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  275 bits (705), Expect = 6e-81
 Identities = 102/673 (15%), Positives = 204/673 (30%), Gaps = 108/673 (16%)

Query: 24  TFDSSVSFRMVQWSQSNDCCTWS---GVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLK 80
           +     +     W+ + +   W    GV  +  GRV GL L     S  +    ++  L 
Sbjct: 48  SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV--PDAIGQLT 105

Query: 81  YLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMY 140
            L+ L L  +     E   G   ++   +               V    R    DL    
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 141 FVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF 200
               P +      S +        ++     NI+       +A+  L  KL+   +    
Sbjct: 166 INSDPQQKSIKKSSRITLK---DTQIGQLSNNIT----FVSKAVMRL-TKLRQFYMGNSP 217

Query: 201 LSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQL 260
                        +           Y        +  +LT + + +C      P  +  L
Sbjct: 218 FVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 261 PTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCN 320
           P ++ ++++ N             +S E L       +          + +  +     N
Sbjct: 273 PEMQLINVACNRG-----------ISGEQLKDDWQALA-----DAPVGEKIQIIYIGYNN 316

Query: 321 F-NGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQ 379
               P+ TS+  + +L  L+  +N   G +P+      LA L+L+YN  T   ++     
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANF-CGF 375

Query: 380 LLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSD 439
              + ++  +HN L   IP                        +  + S   +  +D S 
Sbjct: 376 TEQVENLSFAHNKL-KYIPNIF---------------------DAKSVSV--MSAIDFSY 411

Query: 440 NNLEG-------PIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
           N +         P+  + F+  N+  + LS+N+     + +       L  ++L  N L 
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLT 470

Query: 493 VVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKD 552
            +  +S+                            L  +DL  N+++  + +        
Sbjct: 471 EIPKNSLKDENENFKNT----------------YLLTSIDLRFNKLTK-LSDDFRATTLP 513

Query: 553 SFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTS 612
               ++LS+N       P    + ++L    + + +               D  GN    
Sbjct: 514 YLVGIDLSYNSFSKF--PTQPLNSSTLKGFGIRNQR---------------DAQGNRTLR 556

Query: 613 SIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSD 672
             P  I    SL+       N +   + E I    N+ VLD+  N    +  + +     
Sbjct: 557 EWPEGITLCPSLTQ-LQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISIDLSYVCPY-- 610

Query: 673 SQLGVLNLRRNNL 685
            + G+  L  +  
Sbjct: 611 IEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  253 bits (647), Expect = 7e-73
 Identities = 93/647 (14%), Positives = 199/647 (30%), Gaps = 111/647 (17%)

Query: 101 LGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNL 160
           L +   +T L+L   G +G++P  +  +T L  L L                +S  +   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM--- 133

Query: 161 AELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRL 220
                                          +                        +I+ 
Sbjct: 134 -----------------------------SDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 221 DM--NDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSL 278
            +  +     + +        T +   S  +     + +++L  L    +  +  +  ++
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 279 PDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYL 338
            +  +N + E                  NLK+L+ VE Y C     +PT +  L ++  +
Sbjct: 224 CEAWENENSEYA-----QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 339 DMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNL-GGSI 397
           +++ N           ++ LA                       +  + + +NNL    +
Sbjct: 279 NVACNRGISGEQLKDDWQALADA----------------PVGEKIQIIYIGYNNLKTFPV 322

Query: 398 PQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLK 457
             SL ++  +  L    NQ +G +    +     L +L+L+ N +           + ++
Sbjct: 323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK--LASLNLAYNQITEIPANFCGFTEQVE 380

Query: 458 ILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL------LTTLSL 511
            L  + NK      +   + +  +  +D SYN +  V G +     P       +++++L
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 512 ASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSF------NHLNLSHNL 563
           ++ ++S  P       + L  ++L  N ++  IP    K   ++F        ++L  N 
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 564 LVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMS 623
           L  L   +  + L  L  +DL  N                        S  P    +  +
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSF----------------------SKFPTQPLNSST 537

Query: 624 LSIF-----FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVL 678
           L  F          N      PE I    +L  L +  N +  +            + VL
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT-----PNISVL 592

Query: 679 NLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEI 725
           +++ N       +            L  ++ +      +  C  L+I
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-----DIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  236 bits (603), Expect = 6e-67
 Identities = 96/644 (14%), Positives = 195/644 (30%), Gaps = 119/644 (18%)

Query: 318 LCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTGGISSIG 376
           L  +      S++   ++  L +     SG +P ++     L  L L  +         G
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 377 WE---QLLNLFHVDLSHNNLGGSIPQSLF--ELPMVQHLLLADNQFDGHVTEISNASSSL 431
            +     ++         +   +        +   +    +  +     + + S  +   
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTI-----ELDAIQRLRNLFRLDL 486
              +    NN+   +  +   L  L+   + ++ FV        E +  +  +     DL
Sbjct: 186 T-QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243

Query: 487 SYNRLAVVAGSSVYCFPPLLTTLSLASCKLS-AIPN-LRKQTKLYHLDLSDNQI-SGEIP 543
            ++ L              LT + + +C     +P  L+   ++  ++++ N+  SGE  
Sbjct: 244 KWDNL------------KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

Query: 544 NWLWKIGKDSFN-----HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPP 598
              W+   D+        + + +N L +     S+  +  L +L+   NQ++GK+P    
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP---- 347

Query: 599 NAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNY 658
                               GS + L+   + + N +T +          +  L  ++N 
Sbjct: 348 ------------------AFGSEIKLASL-NLAYNQITEIPANFCGFTEQVENLSFAHNK 388

Query: 659 LSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFP-------ANCSLRTLDLNGNQLEG 711
           L   IP      S S +  ++   N +       F           ++ +++L+ NQ+  
Sbjct: 389 LKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 712 MVPKSLANCSVLEILDLGNNQFDD-------TFPCWVKNASRLHVLILRSNNFFGNISCP 764
              +  +  S L  ++L  N   +             KN   L  + L   N    +S  
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL-RFNKLTKLSDD 506

Query: 765 RYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYY 824
               + P L  IDL+ N FS   P                       L+           
Sbjct: 507 FRATTLPYLVGIDLSYNSFSK-FP---------------TQPLNSSTLKG---------- 540

Query: 825 QDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSI 884
                               I    D   N      PE + L  SL  L +  N +   +
Sbjct: 541 ------------------FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KV 581

Query: 885 PSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
              I     I  LD+  N       + +       +  L Y+  
Sbjct: 582 NEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  188 bits (480), Expect = 1e-50
 Identities = 63/522 (12%), Positives = 144/522 (27%), Gaps = 96/522 (18%)

Query: 428 SSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLS 487
           S+  +  L L      G +P +  +L  L++L L S+       L   + +      +  
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLW 547
                                +      +   P     + L    ++ +     I     
Sbjct: 139 -----------------QKMRMHYQKTFVDYDPRE-DFSDLIKDCINSDPQQKSIKKSSR 180

Query: 548 KIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSG 607
              KD    +    N +  +    ++  LT L    + ++    +           +Y  
Sbjct: 181 ITLKD--TQIGQLSNNITFV--SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-- 234

Query: 608 NNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCL 667
                +  +   +   L+             +P  +     + +++++ N          
Sbjct: 235 AQQYKTEDLKWDNLKDLTDV-EVYNCPNLTKLPTFLKALPEMQLINVACNRGIS------ 287

Query: 668 INMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQL-EGMVPKSLANCSVLEIL 726
                         +   +    A  P    ++ + +  N L    V  SL     L +L
Sbjct: 288 ------------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 727 DLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR 786
           +   NQ +   P    +  +L  L L + N    I    +      ++ +  A NK    
Sbjct: 336 ECLYNQLEGKLPA-FGSEIKLASLNL-AYNQITEIP-ANFCGFTEQVENLSFAHNKLKY- 391

Query: 787 LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF 846
           +P                    +  +    ++ S                       N  
Sbjct: 392 IP-------------NIFDAKSVSVMSA--IDFSY----------------------NEI 414

Query: 847 TSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG 906
            S+D        P+        ++ ++NLS+N ++     L      + S++L  N L+ 
Sbjct: 415 GSVD---GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471

Query: 907 -------TIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSF 941
                         +   L+ ++L +N L   +    +  + 
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  149 bits (379), Expect = 1e-37
 Identities = 55/446 (12%), Positives = 118/446 (26%), Gaps = 88/446 (19%)

Query: 522 LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLL---VSLEQPYSISDLTS 578
           L    ++  L L     SG +P+ + ++       L L  +       L  P  IS   S
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQL--TELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 579 LSVLDLHSNQIQGKIPPLPPNAAYVD-----YSGNNFTSSIPVDIGSFMSLSIFFSFSKN 633
                      Q       P   + D      + +    SI       +  +       N
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT-QIGQLSN 193

Query: 634 SLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATF 693
           ++T  + +++   T L    +  +                     N        T    +
Sbjct: 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-------ENSEYAQQYKTEDLKW 245

Query: 694 PANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF--------DDTFPCWVKNAS 745
                L  +++        +P  L     ++++++  N+         D           
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 746 RLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRS 805
           ++ ++ +  NN                L +++   N+  G+LP                +
Sbjct: 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP----------------A 348

Query: 806 QSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMG 865
                 L                                    ++ + N          G
Sbjct: 349 FGSEIKLAS----------------------------------LNLAYNQITEIPANFCG 374

Query: 866 LLQSLCALNLSHNALTGSIPSL--IGNLREIESLDLSMNNLSG-------TIPAQLASLN 916
             + +  L+ +HN L   IP++    ++  + ++D S N +          +        
Sbjct: 375 FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 917 FLSVLNLSYNHLVGRIPTSTQLQSFL 942
            +S +NLS N +           S L
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPL 459

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 2e-21
 Identities = 45/263 (17%), Positives = 87/263 (33%), Gaps = 21/263 (7%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMF------NATEIPSGLGNLTNLTTLNL 112
           L  +   +   I N     S+  + +++ ++N        N   +        N++++NL
Sbjct: 382 LSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 113 SNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVN 172
           SN   +       S  + L +++L G      P K    + +   +N   L  + L    
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIP-KNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 173 ISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS----- 227
           ++   +      ++L P L  + LS    S        N  +L    +            
Sbjct: 500 LT--KLSDDFRATTL-PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 228 -PVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS 286
              PE +    +LT L + S  +     EKI   P +  LD+  N  +   L      + 
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISIDLSYVCPYIE 612

Query: 287 LETLILSATNFSGILPDSIKNLK 309
               +L       I      ++K
Sbjct: 613 AGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 8e-20
 Identities = 31/265 (11%), Positives = 80/265 (30%), Gaps = 36/265 (13%)

Query: 692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF----DDTFPCWVKNASRL 747
           +  +N  +  L L G    G VP ++   + LE+L LG++          P  +      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 748 HVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ- 806
                   ++            +  L    + S+     + +   + L+   + +  +  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 807 -------SELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGP 859
                    L  L+     +  + +                 I   + + +         
Sbjct: 196 TFVSKAVMRLTKLRQ--FYMGNSPFVAEN-------------ICEAWENENSEYAQQYKT 240

Query: 860 IPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNL--------SGTIPAQ 911
              +   L+ L  + + +      +P+ +  L E++ ++++ N               A 
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 912 LASLNFLSVLNLSYNHL-VGRIPTS 935
                 + ++ + YN+L    + TS
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETS 325

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  265 bits (680), Expect = 9e-78
 Identities = 116/607 (19%), Positives = 212/607 (34%), Gaps = 59/607 (9%)

Query: 206 DPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLET 265
           +P +  + +++   +++N  Y  +P+ L    +  +L LS   L           P L+ 
Sbjct: 1   EPCVEVVPNITYQCMELN-FYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQV 56

Query: 266 LDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPI 325
           LDLS  E+       +     L TLIL+      +   +   L +L              
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ------------- 103

Query: 326 PTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLF 384
                       L     + +      +   + L  L++++N+         +  L NL 
Sbjct: 104 -----------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 385 HVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSL--LDTLDLSDNNL 442
           H+DLS N +       L  L  +  L L+ +     +  I   +     L  L L +N  
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212

Query: 443 EGPIPLSFFE-LKNLKILLLSSNKFVG-----TIELDAIQRLRNLFRLDLSYNRLAVVAG 496
              +  +  + L  L++  L   +F         +  A++ L NL   +     L     
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 497 SSVYCFPPL--LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSF 554
             +  F  L  +++ SL S  +  + +        HL+L + +        L      S 
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-----SL 327

Query: 555 NHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ--GKIPPLPPNAA---YVDYSGNN 609
             L  + N   +    +S  DL SL  LDL  N +   G             Y+D S N 
Sbjct: 328 KRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 610 FTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESI-CNATNLLVLDLSYNYLSGMIPTCLI 668
              ++  +      L     F  ++L  +   S+  +  NL+ LD+S+ +          
Sbjct: 385 VI-TMSSNFLGLEQLEH-LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 669 NMSDSQLGVLNLRRNNLNGTVSATFPANC-SLRTLDLNGNQLEGMVPKSLANCSVLEILD 727
            +  S L VL +  N+              +L  LDL+  QLE + P +  + S L++L+
Sbjct: 443 GL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRL 787
           + +N F        K  + L VL    N+   +      +     L  ++L  N F+   
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLTQNDFACTC 559

Query: 788 PQKWLLN 794
             +  L 
Sbjct: 560 EHQSFLQ 566

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  241 bits (616), Expect = 6e-69
 Identities = 125/676 (18%), Positives = 215/676 (31%), Gaps = 122/676 (18%)

Query: 261 PTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCN 320
            + + LDLS+N L       F     L+ L LS      I   + ++L +LS +      
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 321 FNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTGGISSIGWEQ 379
                  + S LS L  L     + +      +   + L  L++++N+         +  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 380 LLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSL--LDTLDL 437
           L NL H+DLS N +       L  L  +  L L+ +     +  I   +     L  L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 438 SDNNLEGPIPLSFFE-LKNLKILLLSSNKFVG-----TIELDAIQRLRNLFRLDLSYNRL 491
            +N     +  +  + L  L++  L   +F         +  A++ L NL   +     L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 492 AVVAGSSVYCFPPL--LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKI 549
                  +  F  L  +++ SL S  +  + +        HL+L + +        L   
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-- 325

Query: 550 GKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNN 609
              S   L  + N   +    +S  DL SL  LDL  N +                    
Sbjct: 326 ---SLKRLTFTSNKGGN---AFSEVDLPSLEFLDLSRNGL-------------------- 359

Query: 610 FTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLIN 669
                                   S  G   +S    T+L  LDLS+N +  M    L  
Sbjct: 360 ------------------------SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-- 393

Query: 670 MSDSQLGVLNLRRNNLNGTVSATFPANC-SLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728
               QL  L+ + +NL      +   +  +L  LD++               S LE+L +
Sbjct: 394 -GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452

Query: 729 GNNQFDDTF-PCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRL 787
             N F + F P        L  L L           P    S   LQ+++++ N F   L
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFS-L 509

Query: 788 PQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFT 847
                  L           + L+ L                                   
Sbjct: 510 DTFPYKCL-----------NSLQVL----------------------------------- 523

Query: 848 SIDFSRNNFEGPIPEEMG-LLQSLCALNLSHNALTGSIPS--LIGNLREIESLDLSMNNL 904
             D+S N+      +E+     SL  LNL+ N    +      +  +++   L + +  +
Sbjct: 524 --DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

Query: 905 SGTIPAQLASLNFLSV 920
               P+    +  LS+
Sbjct: 582 ECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  234 bits (598), Expect = 2e-66
 Identities = 120/600 (20%), Positives = 204/600 (34%), Gaps = 55/600 (9%)

Query: 82  LQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYF 141
            ++L+L+FN            +   L  L+LS              ++ L TL L+G   
Sbjct: 30  TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 142 VRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFL 201
                        G    L+ L++L     N++   +E    +  L   L+ L+++   +
Sbjct: 89  QSLA--------LGAFSGLSSLQKLVAVETNLA--SLEN-FPIGHL-KTLKELNVAHNLI 136

Query: 202 -SGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLT----SLYLSSCGLHGAFPEK 256
            S  +    SNL +L  + L  N + S     L     +     SL LS   ++      
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPG 195

Query: 257 ILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSG------ILPDSIKNLK 309
             +   L  L L  N      +    Q L+ LE   L    F            +++ L 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 310 NLSRVEF---YLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYN 366
           NL+  EF   YL  +   I    + L+ +    +        +          +L+L   
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNC 314

Query: 367 IFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG-HVTEIS 425
            F     ++  + L       L+  +  G    S  +LP ++ L L+ N          S
Sbjct: 315 KFG-QFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 426 NASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLD 485
           +  ++ L  LDLS N +   +  +F  L+ L+ L    +      E      LRNL  LD
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 486 LSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPN---LRKQTKLYHLDLSDNQISG 540
           +S+        +    F  L  L  L +A              +   L  LDLS  Q+  
Sbjct: 428 ISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 541 EIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIP----PL 596
             P     +   S   LN+SHN   SL   +    L SL VLD   N I           
Sbjct: 485 LSPTAFNSL--SSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 597 PPNAAYVDYSGNNFTSSIP-VDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLS 655
           P + A+++ + N+F  +        ++            +    P        +L L+++
Sbjct: 542 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG-MPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  221 bits (565), Expect = 4e-62
 Identities = 118/616 (19%), Positives = 199/616 (32%), Gaps = 91/616 (14%)

Query: 331 DLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSH 390
            +  + Y  M  N +   IP  ++  +   LDLS+N      S   +     L  +DLS 
Sbjct: 6   VVPNITYQCMELNFYK--IPD-NLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSR 61

Query: 391 NNLGGSIPQSLFELPMVQHLLLADNQFDG-HVTEISNASSSLLDTLDLSDNNLEGPIPLS 449
             +      +   L  +  L+L  N      +   S  SS  L  L   + NL       
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS--LQKLVAVETNLASLENFP 119

Query: 450 FFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCF---PPLL 506
              LK LK L ++ N        +    L NL  LDLS N++  +  + +      P L 
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 507 TTLSLASCKLSAI-PNLRKQTKLYHLDLSDNQISGEIP-NWLWKIGKDSFNHLNLSHNLL 564
            +L L+   ++ I P   K+ +L+ L L +N  S  +    +  +     + L L     
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 565 VSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSL 624
               + +  S L  L  L +   ++                  + +   I        ++
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLA---------------YLDYYLDDIIDLFNCLTNV 284

Query: 625 SIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN 684
           S F S    ++  V   S         L+L            L ++         L   +
Sbjct: 285 SSF-SLVSVTIERVKDFSYN--FGWQHLELVNCKFGQFPTLKLKSL-------KRLTFTS 334

Query: 685 LNGTVSATFPANCSLRTLDLNGNQL--EGMVPKSLANCSVLEILDLGNNQFDDTFPCWVK 742
             G  + +     SL  LDL+ N L  +G   +S    + L+ LDL  N    T      
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFL 393

Query: 743 NASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE 802
              +L  L  + +N           +S   L  +D++               L       
Sbjct: 394 GLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRV-AFNGIFNGL------- 444

Query: 803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPI-P 861
               S L+ L                                       + N+F+    P
Sbjct: 445 ----SSLEVL-------------------------------------KMAGNSFQENFLP 463

Query: 862 EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVL 921
           +    L++L  L+LS   L    P+   +L  ++ L++S NN           LN L VL
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523

Query: 922 NLSYNHLVGRIPTSTQ 937
           + S NH++       Q
Sbjct: 524 DYSLNHIMTSKKQELQ 539

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  169 bits (431), Expect = 2e-44
 Identities = 91/442 (20%), Positives = 147/442 (33%), Gaps = 51/442 (11%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           LDLS   ++     +   F    L  L L  N  +   + + +  L  L    L    F 
Sbjct: 182 LDLSLNPMNFIQPGA---FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 119 GQIPIQV---SGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA 175
            +  ++    S +  L  L +         L     ++  L   L  +    L  V I  
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAY--LDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 176 PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLAD 235
                     S     Q L L  C         L +L+ L+       + +S       D
Sbjct: 297 VKD------FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVD 345

Query: 236 FSNLTSLYLSSCGLH--GAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
             +L  L LS  GL   G   +      +L+ LDLS+N  +     +F     LE L   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQ 404

Query: 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS-L 352
            +N   +   S+                          L  L+YLD+S  H         
Sbjct: 405 HSNLKQMSEFSV-----------------------FLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 353 HMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLL 412
           +   +L  L ++ N F        + +L NL  +DLS   L    P +   L  +Q L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 413 ADNQFDGHVTE-ISNASSSLLDTLDLSDNNLEGPIPLSFFEL-KNLKILLLSSNKFVGTI 470
           + N F    T      +S  L  LD S N++             +L  L L+ N F  T 
Sbjct: 502 SHNNFFSLDTFPYKCLNS--LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 471 ELDAIQR-LRNLFRLDLSYNRL 491
           E  +  + +++  +L +   R+
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERM 581

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 16/191 (8%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           LD+S        +       L  L+ L +A N F    +P     L NLT L+LS     
Sbjct: 426 LDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGI 178
              P   + ++ L  L++S   F            +   + L  L+ L     +I     
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLD--------TFPYKCLNSLQVLDYSLNHIMTSK- 534

Query: 179 EWCQALSSLVPKLQVLSLSGCFLSG--PVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF 236
              Q L      L  L+L+    +        L  ++    + +++  +    P      
Sbjct: 535 --KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592

Query: 237 SNLTSLYLSSC 247
             + SL ++  
Sbjct: 593 P-VLSLNITCQ 602

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  253 bits (648), Expect = 2e-73
 Identities = 100/579 (17%), Positives = 186/579 (32%), Gaps = 47/579 (8%)

Query: 146 LKLENPNLSGLLQNL-AELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGP 204
              EN  L+ +   L      L      +           S L   L  L L+ C +   
Sbjct: 17  YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNT---TFSRL-INLTFLDLTRCQIYWI 72

Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
            + +  +   L  + L  N L       L+    L  L+    G+       +    TLE
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 265 TLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYL-CNFNG 323
           +L L  N +    LP       L+ L         +  + + +L+  + +   L  N   
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 324 PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMF---RNLAYLDLSYNIFTG-GISSIGWEQ 379
            I     D +    L+         I         ++L               +      
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 380 LLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSL--LDTLDL 437
            +++  ++L  +        +      +Q L L         +E+ +    L  L  L L
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL----SELPSGLVGLSTLKKLVL 308

Query: 438 SDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGS 497
           S N  E    +S     +L  L +  N     +    ++ L NL  LDLS++        
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD------- 361

Query: 498 SVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHL 557
                   + T    + +L  + +L+       L+LS N+          +        L
Sbjct: 362 --------IETSDCCNLQLRNLSHLQ------SLNLSYNEPLSLKTEAFKEC--PQLELL 405

Query: 558 NLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP---PNAAYVDYSGNNFTSSI 614
           +L+   L   +      +L  L VL+L  + +      L    P   +++  GN+F    
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 615 PVDIGSFMSLS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSD 672
                S  +L        S   L+ +   +  +   +  +DLS+N L+      L ++  
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK- 524

Query: 673 SQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEG 711
                LNL  N+++  + +  P     RT++L  N L+ 
Sbjct: 525 --GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  227 bits (581), Expect = 3e-64
 Identities = 120/680 (17%), Positives = 215/680 (31%), Gaps = 90/680 (13%)

Query: 42  CCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG- 100
             +       E  +    +     ++       +       + L  +FN+     I +  
Sbjct: 2   TSSDQKCIEKEVNKT--YNCENLGLNEIPGTLPN-----STECLEFSFNVL--PTIQNTT 52

Query: 101 LGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNL 160
              L NLT L+L+                RL TL L+    +              L   
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA--------ETALSGP 104

Query: 161 AELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRL 220
             L+ L+     IS   I+    L +    L+ L L    +S    P       L V+  
Sbjct: 105 KALKHLFFIQTGIS--SID-FIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 221 DMNDLYSPVPEFLADFSNLTSLYLSSCGLH-GAFPEKILQLPTLETLDLSYNELLQGSLP 279
             N ++    E ++     T+L L+  G                ++L+    + L     
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 280 DFHQN--LSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVY 337
               +   SL        +   I P   + L  +S                      +  
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS----------------------VES 258

Query: 338 LDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTGGISSI--GWEQLLNLFHVDLSHNNLG 394
           +++  ++F      + H F  L  LDL+       +S +  G   L  L  + LS N   
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTAT----HLSELPSGLVGLSTLKKLVLSANKFE 314

Query: 395 GSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE--GPIPLSFFE 452
                S    P + HL +  N     +      +   L  LDLS +++E      L    
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 453 LKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLA 512
           L +L+ L LS N+   +++ +A +    L  LDL++ RL V    S +    LL  L+L+
Sbjct: 375 LSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 513 SCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGK-DSFNHLNLSHNLLVSLEQ 569
              L             L HL+L  N            +        L LS   L S+  
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-D 492

Query: 570 PYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFS 629
            ++ + L  ++ +DL  N++                      +S  ++  S +   I+ +
Sbjct: 493 QHAFTSLKMMNHVDLSHNRL----------------------TSSSIEALSHLK-GIYLN 529

Query: 630 FSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTV 689
            + N ++ ++P  +   +    ++L  N L      C  +     L         L  T 
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPL-----DCTCSNIYF-LEWYKENMQKLEDTE 583

Query: 690 SATFPANCSLRTLDLNGNQL 709
                    LR + L+   L
Sbjct: 584 DTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (540), Expect = 1e-58
 Identities = 117/677 (17%), Positives = 222/677 (32%), Gaps = 120/677 (17%)

Query: 264 ETLDLSYNELLQ--GSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNF 321
           +T +     L +  G+LP+     S E L  S      I   +   L NL+ ++   C  
Sbjct: 15  KTYNCENLGLNEIPGTLPN-----STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 322 NGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTGGISSIGWEQL 380
                 +     +L  L ++ N        +L   + L +L       +  I  I     
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQ 128

Query: 381 LNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG-HVTEISNASSSLLDTLDLSD 439
             L  + L  N++        F    ++ L   +N        ++S+   +   +L+L+ 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 440 NNLEGPIPLSFFELKNLKILLLSSNKFVGT-IELDAIQRLRNLFRLDLSYNRLAVVAGSS 498
           N++ G I    F+    + L     + +    +      +++L+           ++ + 
Sbjct: 189 NDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

Query: 499 VYCFPPL-LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFN 555
                 + + +++L       I +      + L  LDL+   +S E+P+ L  +   +  
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL--STLK 304

Query: 556 HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIP 615
            L LS N   +L    S S+  SL+ L +  N  + ++                      
Sbjct: 305 KLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGT-------------------- 343

Query: 616 VDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQL 675
              G   +L                       NL  LDLS++ +       L   + S L
Sbjct: 344 ---GCLENL----------------------ENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 676 GVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKS-LANCSVLEILDLGNNQFD 734
             LNL  N      +  F     L  LDL   +L+    +S   N  +L++L+L ++  D
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 735 DTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW-PMLQIIDLASNKFSGRLPQKWLL 793
            +          L  L L+ N+F         ++     L+I+ L+    S  + Q    
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFT 497

Query: 794 NLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSR 853
           +L             + H+                                     D S 
Sbjct: 498 SL-----------KMMNHV-------------------------------------DLSH 509

Query: 854 NNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLA 913
           N       E +  L+ +  LNL+ N ++  +PSL+  L +  +++L  N L  T      
Sbjct: 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN--- 565

Query: 914 SLNFLSVLNLSYNHLVG 930
            + FL     +   L  
Sbjct: 566 -IYFLEWYKENMQKLED 581

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (526), Expect = 7e-57
 Identities = 114/570 (20%), Positives = 200/570 (35%), Gaps = 62/570 (10%)

Query: 385 HVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNAS---SSLLDTLDLSDNN 441
             +  +  L   IP +L      + L  + N        I N +      L  LDL+   
Sbjct: 16  TYNCENLGLN-EIPGTLP--NSTECLEFSFNVL----PTIQNTTFSRLINLTFLDLTRCQ 68

Query: 442 LEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYC 501
           +      +F     L  L+L++N  +  +   A+   + L  L      ++ +       
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIP--- 124

Query: 502 FPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHL 557
                 L +L L S  +S+I         KL  LD  +N I       +  + + +   L
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 558 NLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAA-----YVDYSGNNFTS 612
           NL+ N +  +       D      L+    Q    I     N+         +   +   
Sbjct: 185 NLNGNDIAGI--EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 613 SIPVDIGSFMSLSI-FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMS 671
             P        +S+   +  K+    +   +    + L  LDL+  +LS  +P+ L+ +S
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLS 301

Query: 672 DSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMV-PKSLANCSVLEILDLGN 730
              L  L L  N        +     SL  L + GN     +    L N   L  LDL +
Sbjct: 302 --TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 731 NQFD--DTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788
           +  +  D     ++N S L  L L S N   ++         P L+++DLA  +   +  
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNL-SYNEPLSLK-TEAFKECPQLELLDLAFTRLKVKDA 417

Query: 789 QKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS 848
           Q    NL                L+   LNLS       + ++ + L   L  +      
Sbjct: 418 QSPFQNL--------------HLLKV--LNLSH----SLLDISSEQLFDGLPAL----QH 453

Query: 849 IDFSRNNFEGPIPEEMGLLQ---SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS 905
           ++   N+F     ++   LQ    L  L LS   L+        +L+ +  +DLS N L+
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 906 GTIPAQLASLNFLSVLNLSYNHLVGRIPTS 935
            +    L+ L  +  LNL+ NH+   +P+ 
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.6 bits (176), Expect = 7e-13
 Identities = 42/275 (15%), Positives = 74/275 (26%), Gaps = 80/275 (29%)

Query: 677 VLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736
             N     LN  +  T P +     L+ + N L  +   + +    L  LDL   Q    
Sbjct: 16  TYNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--- 69

Query: 737 FPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLE 796
                     +H    +S                  L  + L +N     + +  L    
Sbjct: 70  --------YWIHEDTFQSQ---------------HRLDTLVLTANPLIF-MAETALSGP- 104

Query: 797 AMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNF 856
                       LKHL                                      F +   
Sbjct: 105 ----------KALKHL-------------------------------------FFIQTGI 117

Query: 857 EGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN 916
                  +   ++L +L L  N ++           +++ LD   N +       ++SL 
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 917 FLSV--LNLSYNHLVGRIPTSTQLQSFLATSFEGN 949
             +   LNL+ N + G  P +     F + +F G 
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  238 bits (609), Expect = 6e-68
 Identities = 111/616 (18%), Positives = 199/616 (32%), Gaps = 78/616 (12%)

Query: 146 LKLENPNLSGLLQNL-AELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGP 204
            +  +  LS +  ++ +  + + L    +         + S+   +LQ L LS C +   
Sbjct: 16  YQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSY---SFSNF-SELQWLDLSRCEIETI 71

Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
            D +   L  LS + L  N + S  P   +  ++L +L      L       I QL TL+
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 265 TLDLSYNELLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNG 323
            L++++N +    LP +  NL +L  + LS      I  + ++ L+              
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP----------- 180

Query: 324 PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNL 383
                       + LDMS N              L  L L  N  +  I     + L  L
Sbjct: 181 ---------QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 384 FHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE 443
               L            +FE  +++ L                     +D   L+  N  
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGL-----------------CDVTIDEFRLTYTNDF 274

Query: 444 GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFP 503
               + F  L N+  + L+         L+ + +      L +   +L            
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQLKQFPTLD----L 327

Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNL 563
           P L +L+L   K S          L +LDLS N +S         +G +S  HL+LS N 
Sbjct: 328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 564 LVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMS 623
            + +    +   L  L  LD   + ++                             +F+S
Sbjct: 388 AIIM--SANFMGLEELQHLDFQHSTLKRVTEF-----------------------SAFLS 422

Query: 624 LS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLR 681
           L   ++   S  +            T+L  L ++ N       + +   + + L  L+L 
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLS 481

Query: 682 RNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWV 741
           +  L       F     L+ L+++ N L  +          L  LD   N+ + +     
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 742 KNASRLHVLILRSNNF 757
                L    L +N+ 
Sbjct: 542 HFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  217 bits (554), Expect = 2e-60
 Identities = 113/556 (20%), Positives = 184/556 (33%), Gaps = 53/556 (9%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMY 140
            ++++L+FN      + S    N + L  L+LS             G+  L  L L+G  
Sbjct: 34  TKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 141 FVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF 200
                         G    L  L  L      ++   +E    +  L   L+ L+++  F
Sbjct: 92  IQSFS--------PGSFSGLTSLENLVAVETKLA--SLE-SFPIGQL-ITLKKLNVAHNF 139

Query: 201 LSG-PVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLT----SLYLSSCGLHGAFPE 255
           +    +    SNL +L  + L  N + +     L           SL +S   +     +
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQD 198

Query: 256 KILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSG------ILPDSIKNL 308
           +  Q   L  L L  N      +    QNL+ L    L    F          P  ++ L
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 309 KNLSRVEFYL--CNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYN 366
            +++  EF L   N           L+ +  + ++       +  +        L +   
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRC 317

Query: 367 IFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG-HVTEIS 425
                +       L  L  + L+ N    SI      LP + +L L+ N          S
Sbjct: 318 ----QLKQFPTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYS 371

Query: 426 NASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLD 485
           +  ++ L  LDLS N     +  +F  L+ L+ L    +      E  A   L  L  LD
Sbjct: 372 DLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430

Query: 486 LSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPN---LRKQTKLYHLDLSDNQISG 540
           +SY             F  L  L TL +A                T L  LDLS  Q+  
Sbjct: 431 ISYTNT---KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 541 EIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIP---PLP 597
                   +       LN+SHN L+ L      + L SLS LD   N+I+         P
Sbjct: 488 ISWGVFDTL--HRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 598 PNAAYVDYSGNNFTSS 613
            + A+ + + N+    
Sbjct: 545 KSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  205 bits (523), Expect = 2e-56
 Identities = 103/542 (19%), Positives = 175/542 (32%), Gaps = 56/542 (10%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGF 117
           LDLS   I    D +     L +L +L L  N         G    LT+L  L       
Sbjct: 61  LDLSRCEIETIEDKA--WHGLHHLSNLILTGNPI--QSFSPGSFSGLTSLENLVAVETKL 116

Query: 118 AGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
           A      +  +  L  L+++          + +  L     NL  L  + L    I    
Sbjct: 117 ASLESFPIGQLITLKKLNVAH-------NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDL-YSPVPEFLADF 236
           +   Q L         L +S   +   +         L  + L  N    + +   L + 
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLE--------TLDLSYNELLQGSLPDFHQNLSLE 288
           + L    L           +I +   +E           L+Y       +  FH   ++ 
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 289 TLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGP 348
            + L+  +   +  + +        +    C      PT   DL  L  L ++ N  S  
Sbjct: 289 AMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQ-FPTL--DLPFLKSLTLTMNKGSIS 343

Query: 349 IPSLHMFRNLAYLDLSYNIFTG-GISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMV 407
              + +  +L+YLDLS N  +  G  S       +L H+DLS N     +  +   L  +
Sbjct: 344 FKKVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401

Query: 408 QHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFV 467
           QHL    +         +  S   L  LD+S  N +      F  L +L  L ++ N F 
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 468 GTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTK 527
                +      NL  LDLS  +L  ++      F  L                     +
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGV---FDTL--------------------HR 498

Query: 528 LYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSN 587
           L  L++S N +     +        S + L+ S N + +  +        SL+  +L +N
Sbjct: 499 LQLLNMSHNNLLFLDSSHY--NQLYSLSTLDCSFNRIETS-KGILQHFPKSLAFFNLTNN 555

Query: 588 QI 589
            +
Sbjct: 556 SV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  204 bits (520), Expect = 6e-56
 Identities = 106/625 (16%), Positives = 187/625 (29%), Gaps = 84/625 (13%)

Query: 323 GPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLN 382
           G +   +  +  +          S  +P   +  +   +DLS+N     + S  +     
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLSK-VPD-DIPSSTKNIDLSFNPLKI-LKSYSFSNFSE 57

Query: 383 LFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG-HVTEISNASSSLLDTLDLSDNN 441
           L  +DLS   +     ++   L  + +L+L  N          S  +S  L+ L   +  
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS--LENLVAVETK 115

Query: 442 LEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYC 501
           L         +L  LK L ++ N             L NL  +DLSYN +          
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ--------- 166

Query: 502 FPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSH 561
                   ++    L  +    +      LD+S N I          I     + L L  
Sbjct: 167 --------TITVNDLQFLRENPQV--NLSLDMSLNPIDFIQDQAFQGI---KLHELTLRG 213

Query: 562 NLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSF 621
           N   S      + +L  L V  L   + +                  N     P  +   
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKD---------------ERNLEIFEPSIMEGL 258

Query: 622 MSLSI-FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNL 680
             ++I  F  +  +             N+  + L+   +  +           +   L++
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED----VPKHFKWQSLSI 314

Query: 681 RRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPC- 739
            R  L    +   P    L++L L  N+    +         L  LDL  N    +  C 
Sbjct: 315 IRCQLKQFPTLDLP---FLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 740 -WVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAM 798
                 + L  L L  N     I      +    LQ +D   +           L+L   
Sbjct: 370 YSDLGTNSLRHLDLSFNGA---IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL--- 423

Query: 799 MVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG 858
                      + L Y  L++S    +        GL   L        ++  + N+F+ 
Sbjct: 424 -----------EKLLY--LDISYTNTKIDFDGIFLGLT-SL-------NTLKMAGNSFKD 462

Query: 859 PIPEEM-GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNF 917
                +     +L  L+LS   L      +   L  ++ L++S NNL     +    L  
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 918 LSVLNLSYNHLVGRIPTSTQLQSFL 942
           LS L+ S+N +             L
Sbjct: 523 LSTLDCSFNRIETSKGILQHFPKSL 547

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  197 bits (503), Expect = 8e-54
 Identities = 106/651 (16%), Positives = 193/651 (29%), Gaps = 117/651 (17%)

Query: 265 TLDLSYNELLQGSLPDFHQNL--SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFN 322
           T      +L    +PD   ++  S + + LS      +   S  N   L  ++   C   
Sbjct: 15  TYQCMDQKLS--KVPD---DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69

Query: 323 GPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTGGISSIGWEQLL 381
                +   L  L  L ++ N      P S     +L  L          + S    QL+
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQLI 128

Query: 382 NLFHVDLSHNNLGG-SIPQSLFELPMVQHLLLADNQFDGHVTEI---SNASSSLLDTLDL 437
            L  ++++HN +    +P     L  + H+ L+ N               +  +  +LD+
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 438 SDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGS 497
           S N ++  I    F+   L  L L  N     I    +Q L  L    L           
Sbjct: 189 SLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF------ 241

Query: 498 SVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHL 557
                                                +  +    P+ +  +   + +  
Sbjct: 242 -----------------------------------KDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 558 NLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSIP 615
            L++    S         L ++S + L    I+  +  +P       +            
Sbjct: 267 RLTYTNDFSD-DIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPT 324

Query: 616 VDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQL 675
           +D+    SL++    + N  +  I        +L  LDLS N LS        ++  + L
Sbjct: 325 LDLPFLKSLTL----TMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

Query: 676 GVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKS-LANCSVLEILDLGNNQFD 734
             L+L  N     +SA F     L+ LD   + L+ +   S   +   L  LD+      
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 735 DTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLN 794
             F       + L+ L +  N+F  N     +  +   L  +DL+  +    +       
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQ-ISWGVFDT 495

Query: 795 LEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRN 854
           L             L+ L                                     + S N
Sbjct: 496 L-----------HRLQLL-------------------------------------NMSHN 507

Query: 855 NFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS 905
           N           L SL  L+ S N +  S   L    + +   +L+ N+++
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 6e-11
 Identities = 35/189 (18%), Positives = 54/189 (28%), Gaps = 30/189 (15%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           LDLS          S++   L+ LQ L+   +        S   +L  L  L++S     
Sbjct: 381 LDLSFNGAI---IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGI 178
                   G+T L TL ++G          ++  LS +  N   L  L L    +     
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGN-------SFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 179 EWCQALSSLV--------------------PKLQVLSLSGCFLSGPVDPSLSNLRSLSVI 218
                L  L                       L  L  S   +           +SL+  
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 219 RLDMNDLYS 227
            L  N +  
Sbjct: 551 NLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 44/310 (14%), Positives = 82/310 (26%), Gaps = 86/310 (27%)

Query: 661 GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANC 720
           G +  C+  + +            L+  V    P++   + +DL+ N L+ +   S +N 
Sbjct: 2   GSLNPCIEVVPNI---TYQCMDQKLS-KVPDDIPSS--TKNIDLSFNPLKILKSYSFSNF 55

Query: 721 SVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS 780
           S L+ LDL   + +                       +  +           L  + L  
Sbjct: 56  SELQWLDLSRCEIETIED-----------------KAWHGL---------HHLSNLILTG 89

Query: 781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLA 840
           N             L           + L++L                            
Sbjct: 90  NPIQS-FSPGSFSGL-----------TSLENL---------------------------- 109

Query: 841 KILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG-SIPSLIGNLREIESLDL 899
                                  +G L +L  LN++HN +    +P+   NL  +  +DL
Sbjct: 110 ---------VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 900 SMNNLSGTIPAQLASLNFLS----VLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGP 955
           S N +       L  L         L++S N +      + Q       +  GN      
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 956 PLNVCPTNSS 965
                   + 
Sbjct: 221 MKTCLQNLAG 230

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  244 bits (623), Expect = 6e-68
 Identities = 97/588 (16%), Positives = 182/588 (30%), Gaps = 63/588 (10%)

Query: 36  WSQSNDCCTWS---GVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMF 92
           W+ + +   W    GVD D  GRV GL L+       +    ++  L  L+ L+   +  
Sbjct: 302 WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV--PDAIGQLTELKVLSFGTHSE 359

Query: 93  NATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPN 152
             +    G   LT   +    +        + +    RL   DL      R P       
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 153 LSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNL 212
            S +      L++  +  +      I   +A+  L  KLQ++  +    +       +  
Sbjct: 420 DSRIS-----LKDTQIGNLTNRITFIS--KAIQRL-TKLQIIYFANSPFTY-----DNIA 466

Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272
                   D    Y       ++  +LT + L +C      P+ +  LP L++L+++ N 
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 273 LLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNG-PIPTSMSD 331
                                       L D       +        N    P   S+  
Sbjct: 527 G---------------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 332 LSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHN 391
           + +L  LD   N     + +      L  L L YN                +  +  SHN
Sbjct: 572 MVKLGLLDCVHNKVRH-LEAFGTNVKLTDLKLDYNQIEEIPEDFC-AFTDQVEGLGFSHN 629

Query: 392 NLGGSIPQSLF--ELPMVQHLLLADNQFDGHVTEISNASSSL----LDTLDLSDNNLEGP 445
            L   IP       + ++  +  + N+       IS +          T+ LS N ++  
Sbjct: 630 KL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 446 IPLSFFELKNLKILLLSSNKF------VGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSV 499
               F     +  ++LS+N            +    +    L  +DL +N+L  ++    
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748

Query: 500 YCFPPLLTTLSLASCKLSAIP----NLRKQTKLY---HLDLSDNQISGEIPNWLWKIGKD 552
               P L+ + ++    S+ P    N  +          D   N+I  + P  +      
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP-- 806

Query: 553 SFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQI-QGKIPPLPPN 599
           S   L +  N +  +     +     L +LD+  N      +  + P 
Sbjct: 807 SLIQLQIGSNDIRKV--DEKL--TPQLYILDIADNPNISIDVTSVCPY 850

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  214 bits (547), Expect = 5e-58
 Identities = 100/662 (15%), Positives = 183/662 (27%), Gaps = 131/662 (19%)

Query: 281 FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDM 340
              N  +  L L+     G +PD+I  L  L  + F   +          +       + 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 341 SFNHFSGPIPS--LHMFRNLAYLDLSYNIFTG--GISSIGWEQLLNLFHVDLS-HNNLGG 395
             +          L   + L   DL  +       +  I  +  ++L    +    N   
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 396 SIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKN 455
            I +++  L  +Q +  A++ F        +  +   +  +           LS+  LK+
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNLKD 492

Query: 456 LKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCK 515
           L  + L +   +  +  D +  L  L  L+++ NR                 + +     
Sbjct: 493 LTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRG---------------ISAAQLKAD 536

Query: 516 LSAIPN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSIS 574
            + + +      K+    +  N +  E P             L+  HN +  LE   +  
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE---AFG 592

Query: 575 DLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNS 634
               L+ L L  NQI                        IP D  +F        FS N 
Sbjct: 593 TNVKLTDLKLDYNQI----------------------EEIPEDFCAFTDQVEGLGFSHNK 630

Query: 635 LTGVIPE-SICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATF 693
           L  +    +  +   +  +D SYN +         +M D +                   
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI----------------- 673

Query: 694 PANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD-------TFPCWVKNASR 746
               +  T+ L+ N+++    +  A  S +  + L NN                 KN   
Sbjct: 674 ----NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 747 LHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ 806
           L  + L   N   ++S      + P L  +D++ N FS   P                  
Sbjct: 730 LTTIDL-RFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPT---------------QP 772

Query: 807 SELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGL 866
                L+                               I    D   N      P  +  
Sbjct: 773 LNSSQLKA----------------------------FGIRHQRDAEGNRILRQWPTGITT 804

Query: 867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN 926
             SL  L +  N +      L   L     LD++ N         +       +  L Y+
Sbjct: 805 CPSLIQLQIGSNDIRKVDEKLTPQLYI---LDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

Query: 927 HL 928
             
Sbjct: 862 KT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  174 bits (442), Expect = 8e-45
 Identities = 66/527 (12%), Positives = 146/527 (27%), Gaps = 115/527 (21%)

Query: 419 GHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRL 478
           G    +   ++  +  L L+    +G +P +  +L  LK+L   ++    +  L   + L
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 479 RNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQI 538
                 +   +R+ +        +   L    L    ++  P ++   K   + L D Q 
Sbjct: 372 TPDM-SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ- 429

Query: 539 SGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPP 598
                             +    N +  +    +I  LT L ++   ++        +  
Sbjct: 430 ------------------IGNLTNRITFI--SKAIQRLTKLQIIYFANSPFTYDNIAVDW 469

Query: 599 NAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNY 658
             A  DY       +  +   +   L+             +P+ + +   L  L+++ N 
Sbjct: 470 EDANSDY--AKQYENEELSWSNLKDLTDV-ELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 659 LSGM---------IPTCLINMSDSQLGVLNLRRNNLNG-TVSATFPANCSLRTLDLNGNQ 708
                        +          ++ +  +  NNL     SA+      L  LD   N+
Sbjct: 527 GISAAQLKADWTRLADDEDTGP--KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

Query: 709 LEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNV 768
           +     ++      L  L L  NQ +   P                 +F           
Sbjct: 585 VR--HLEAFGTNVKLTDLKLDYNQIE-EIP----------------EDFCAF-------- 617

Query: 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAI 828
               ++ +  + NK    +P                +   +  +    ++ S        
Sbjct: 618 -TDQVEGLGFSHNKLKY-IP-------------NIFNAKSVYVMGS--VDFSY------- 653

Query: 829 TVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLI 888
                          N   S              +     +   + LS+N +      L 
Sbjct: 654 ---------------NKIGSE-----GRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

Query: 889 GNLREIESLDLSMNNLS-------GTIPAQLASLNFLSVLNLSYNHL 928
                I ++ LS N ++               +   L+ ++L +N L
Sbjct: 694 ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.6 bits (235), Expect = 8e-20
 Identities = 39/265 (14%), Positives = 75/265 (28%), Gaps = 27/265 (10%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLG------NLTNLTTLNL 112
           L  S   +   I N  +  S+  + S++ ++N          +          N +T+ L
Sbjct: 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI--GSEGRNISCSMDDYKGINASTVTL 680

Query: 113 SNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVN 172
           S            +  + + T+ LS       P     P   G  +N   L  + L    
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP-KDGNYKNTYLLTTIDLRFNK 739

Query: 173 ISA--PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS--- 227
           +++               P L  + +S    S        N   L    +          
Sbjct: 740 LTSLSDDFRATTL-----PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793

Query: 228 ---PVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQN 284
                P  +    +L  L + S  +     EK+   P L  LD++ N  +   +      
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIADNPNISIDVTSVCPY 850

Query: 285 LSLETLILSATNFSGILPDSIKNLK 309
           +     +L       I       ++
Sbjct: 851 IEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.2 bits (229), Expect = 4e-19
 Identities = 36/263 (13%), Positives = 74/263 (28%), Gaps = 27/263 (10%)

Query: 678 LNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF 737
            N   +            N  +  L L G   +G VP ++   + L++L  G +    + 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 738 PCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEA 797
             +        +   R +    +     +      L + DL  +  +     K +     
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYK-KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD-- 420

Query: 798 MMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFE 857
                  S+  LK  Q   L              I  +   + ++  +   I F+ + F 
Sbjct: 421 -------SRISLKDTQIGNLTNR-----------ITFISKAIQRLTKL-QIIYFANSPFT 461

Query: 858 GPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNF 917
                           N  +     +      NL+++  ++L        +P  L  L  
Sbjct: 462 YDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 918 LSVLNLSYNHLVGRIPTSTQLQS 940
           L  LN++ N  +           
Sbjct: 517 LQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 7/118 (5%)

Query: 848 SIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT 907
           + +   + +      ++     +  L+L+     G +P  IG L E++ L    ++ + +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 908 IPA-------QLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLN 958
                        S      + + Y  +         L   L  +   N  +     +
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  205 bits (523), Expect = 2e-59
 Identities = 79/337 (23%), Positives = 124/337 (36%), Gaps = 61/337 (18%)

Query: 629 SFSKNSLTGVIPESICNATNLLVLDLSYNYLSG--MIPTCLINMSDSQLGVLNLR-RNNL 685
                +  GV+ ++      +  LDLS   L     IP+ L N+    L  L +   NNL
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNL 89

Query: 686 NGTVSATFPANCS-LRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNA 744
            G +     A  + L  L +    + G +P  L+    L  LD   N    T P  + + 
Sbjct: 90  VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 745 SRLHVLILRSNNFFGNISCPRYNVSWPML-QIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803
             L  +    N   G I  P    S+  L   + ++ N+ +G++P               
Sbjct: 149 PNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIP--------------- 191

Query: 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEE 863
                  +L                                    +D SRN  EG     
Sbjct: 192 ---PTFANLN--------------------------------LAFVDLSRNMLEGDASVL 216

Query: 864 MGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL 923
            G  ++   ++L+ N+L   +  + G  + +  LDL  N + GT+P  L  L FL  LN+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 924 SYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVC 960
           S+N+L G IP    LQ F  +++  N  L G PL  C
Sbjct: 276 SFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  190 bits (486), Expect = 3e-54
 Identities = 75/260 (28%), Positives = 111/260 (42%), Gaps = 13/260 (5%)

Query: 237 SNLTSLYLSSCGLHGAF--PEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILS 293
             + +L LS   L   +  P  +  LP L  L +     L G +P     L+ L  L ++
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SL 352
            TN SG +PD +  +K L  ++F     +G +P S+S L  LV +    N  SG IP S 
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 353 HMFRNLA-YLDLSYNIFTGGI-SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHL 410
             F  L   + +S N  TG I  +      LNL  VDLS N L G            Q +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFA---NLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 411 LLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTI 470
            LA N     + ++  + +  L+ LDL +N + G +P    +LK L  L +S N   G I
Sbjct: 227 HLAKNSLAFDLGKVGLSKN--LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 471 ELDAIQRLRNLFRLDLSYNR 490
                  L+       + N+
Sbjct: 285 --PQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  179 bits (456), Expect = 3e-50
 Identities = 73/332 (21%), Positives = 126/332 (37%), Gaps = 64/332 (19%)

Query: 292 LSATNFSGILPDSIKNLKNLSRVEFYLCNFNG--PIPTSMSDLSQLVYLDMS-FNHFSGP 348
                + G+L D+      ++ ++    N     PIP+S+++L  L +L +   N+  GP
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 349 IP-SLHMFRNLAYLDLSYNIFTGGI-SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPM 406
           IP ++     L YL +++   +G I   +   Q+  L  +D S+N L G++P S+  LP 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLS--QIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 407 VQHLLLADNQFDGHV-TEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNK 465
           +  +    N+  G +     +  S L  ++ +S N L G IP +F  L NL  + LS N 
Sbjct: 151 LVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208

Query: 466 FVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQ 525
             G          +N  ++ L+ N LA                          +  +   
Sbjct: 209 LEGDA-SVLFGSDKNTQKIHLAKNSLA---FD---------------------LGKVGLS 243

Query: 526 TKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLH 585
             L  LDL +N+I G +P                             ++ L  L  L++ 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQ---------------------------GLTQLKFLHSLNVS 276

Query: 586 SNQIQGKIPPLP--PNAAYVDYSGNNFTSSIP 615
            N + G+IP            Y+ N      P
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  175 bits (447), Expect = 5e-49
 Identities = 91/372 (24%), Positives = 134/372 (36%), Gaps = 74/372 (19%)

Query: 8   CQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCC--TWSGVDCDEAG---RVIGLDLS 62
           C    +  LLQ+K  L   +++S     W  + DCC  TW GV CD      RV  LDLS
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLS----SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 63  EESISAGIDNSSSLFSLKYLQSLNLA-FNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQI 121
             ++       SSL +L YL  L +   N      IP  +  LT L  L +++   +G I
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAI 117

Query: 122 PIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWC 181
           P  +S +  LVTLD S            N  LSG                 +        
Sbjct: 118 PDFLSQIKTLVTLDFSY-----------N-ALSG----------------TLPP------ 143

Query: 182 QALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLS-VIRLDMNDLYSPVPEFLADFSNLT 240
            ++SSL P L  ++  G  +SG +  S  +   L   + +  N L   +P   A+  NL 
Sbjct: 144 -SISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200

Query: 241 SLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGI 300
            + LS   L G            + + L+ N  L   L     + +L  L L        
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIY-- 257

Query: 301 LPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAY 360
                                 G +P  ++ L  L  L++SFN+  G IP     +    
Sbjct: 258 ----------------------GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295

Query: 361 LDLSYNIFTGGI 372
              + N    G 
Sbjct: 296 SAYANNKCLCGS 307

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  172 bits (439), Expect = 6e-48
 Identities = 75/313 (23%), Positives = 123/313 (39%), Gaps = 46/313 (14%)

Query: 96  EIPSGLGNLTNL----TTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENP 151
           +I   LGN T L     T +  N  + G +    +   R+  LDLSG+            
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------------ 60

Query: 152 NLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSG-CFLSGPVDPSLS 210
           NL       + L  L                      P L  L + G   L GP+ P+++
Sbjct: 61  NLPKPYPIPSSLANL----------------------PYLNFLYIGGINNLVGPIPPAIA 98

Query: 211 NLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSY 270
            L  L  + +   ++   +P+FL+    L +L  S   L G  P  I  LP L  +    
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 271 NELLQGSLPDFHQNLS--LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTS 328
           N  + G++PD + + S    ++ +S    +G +P +  NL NL+ V+       G     
Sbjct: 159 NR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216

Query: 329 MSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGI-SSIGWEQLLNLFHVD 387
                    + ++ N  +  +  + + +NL  LDL  N   G +   +   QL  L  ++
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLN 274

Query: 388 LSHNNLGGSIPQS 400
           +S NNL G IPQ 
Sbjct: 275 VSFNNLCGEIPQG 287

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  199 bits (508), Expect = 4e-53
 Identities = 109/579 (18%), Positives = 193/579 (33%), Gaps = 47/579 (8%)

Query: 235 DFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPD-FHQNLSLETLILS 293
             +    L LS   +          L  L+ L+L           + F    +L  L L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPI--PTSMSDLSQLVYLDMSFNHFS--GPI 349
           ++    + PD+ + L +L  +  Y C  +  +       +L  L  LD+S N        
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 350 PSLHMFRNLAYLDLSYNIFTG-GISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQ 408
           PS     +L  +D S N         +   Q   L    L+ N+L   +     +     
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM--- 198

Query: 409 HLLLADNQFDGHVTEISNASSSLL--DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKF 466
                 N F   V EI + S +    D      N +      S     ++       +  
Sbjct: 199 ------NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 467 VGTIELDAIQRLR--NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--L 522
               + +    L   ++  LDLS+  +  +           L  L+LA  K++ I +   
Sbjct: 253 K-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAF 310

Query: 523 RKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVL 582
                L  L+LS N +     +     G     +++L  N +  + Q  +   L  L  L
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQKNHIAII-QDQTFKFLEKLQTL 367

Query: 583 DLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGV-IPE 641
           DL  N +        P+   +  SGN   +   +++ +          S+N L  + I  
Sbjct: 368 DLRDNALTT--IHFIPSIPDIFLSGNKLVTLPKINLTA-----NLIHLSENRLENLDILY 420

Query: 642 SICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANC---- 697
            +    +L +L L+ N  S        + + S L  L L  N L          +     
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPS-LEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 698 -SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNN 756
             L+ L LN N L  + P   ++ + L  L L +N+        +   + L +L + S N
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDI-SRN 536

Query: 757 FFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL 795
                +       +  L ++D+  NKF         +N 
Sbjct: 537 QLLAPN----PDVFVSLSVLDITHNKFICECELSTFINW 571

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  188 bits (479), Expect = 2e-49
 Identities = 119/560 (21%), Positives = 200/560 (35%), Gaps = 62/560 (11%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           L LS   I   +  SS    L+ LQ L L       T       NL NL  L+L ++   
Sbjct: 29  LLLSFNYIRT-VTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86

Query: 119 GQIPIQV-SGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
             +      G+  L  L L       A LK       G  +NL  L  L L    I +  
Sbjct: 87  -FLHPDAFQGLFHLFELRLYFCGLSDAVLK------DGYFRNLKALTRLDLSKNQIRS-- 137

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLR--SLSVIRLDMNDLYSPVPEFLAD 235
           +    +   L   L+ +  S   +    +  L  L+  +LS   L  N LYS V      
Sbjct: 138 LYLHPSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 236 FSN------LTSLYLSSC------------GLHGAFPEKILQLPTLETLDLSYNELLQGS 277
             N      L  L +S               +  +    ++    +      ++ +    
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 278 LPDFH--QNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQL 335
              F      S+  L LS      +     + LK+L  +       N     +   L  L
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL 316

Query: 336 VYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLG 394
             L++S+N        + +    +AY+DL  N     I    ++ L  L  +DL  N L 
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNAL- 374

Query: 395 GSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFE-L 453
                ++  +P +  + L+ N+       +   + +  + + LS+N LE    L F   +
Sbjct: 375 ----TTIHFIPSIPDIFLSGNKL----VTLPKINLT-ANLIHLSENRLENLDILYFLLRV 425

Query: 454 KNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSV--YCFPPL--LTTL 509
            +L+IL+L+ N+F             +L +L L  N L +   + +    F  L  L  L
Sbjct: 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

Query: 510 SLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSL 567
            L    L+++P       T L  L L+ N+++  + +        +   L++S N L++ 
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDL---PANLEILDISRNQLLAP 541

Query: 568 EQPYSISDLTSLSVLDLHSN 587
                     SLSVLD+  N
Sbjct: 542 NP----DVFVSLSVLDITHN 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (439), Expect = 2e-44
 Identities = 101/567 (17%), Positives = 191/567 (33%), Gaps = 69/567 (12%)

Query: 380 LLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSD 439
           L     + LS N +      S   L  +Q L L        + + +  +   L  LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 440 NNLEGPIPLSFFELKNLKILLLSSNKF-VGTIELDAIQRLRNLFRLDLSYNRLAVVAGSS 498
           + +    P +F  L +L  L L         ++    + L+ L RLDLS N++  +    
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 499 VYCFPPLLTTLSLASCKLSAIPNL----RKQTKLYHLDLSDNQISGEIP----NWLWKIG 550
            +     L ++  +S ++  +        +   L    L+ N +   +       +    
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 551 KDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNF 610
                 L++S N           + ++      L           L  +     +  +N 
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI----------LAHHIMGAGFGFHNI 252

Query: 611 TSSIPVDIGSFMSLS----IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTC 666
                 D  +F  L+         S   +  +         +L VL+L+YN ++ +    
Sbjct: 253 KD---PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309

Query: 667 LINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEIL 726
              +    L VLNL  N L    S+ F     +  +DL  N +  +  ++      L+ L
Sbjct: 310 FYGL--DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 727 DLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR 786
           DL +N         +     +  + L  N     ++ P+ N++     +I L+ N+    
Sbjct: 368 DLRDNALTT-----IHFIPSIPDIFLSGNKL---VTLPKINLT---ANLIHLSENRLENL 416

Query: 787 LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF 846
               +LL               + HLQ   L L+Q  +    + +      +   +    
Sbjct: 417 DILYFLLR--------------VPHLQI--LILNQNRFS---SCSGDQTPSENPSL---- 453

Query: 847 TSIDFSRNNFEGPIPEEMGL-----LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSM 901
             +    N  +     E+       L  L  L L+HN L    P +  +L  +  L L+ 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 902 NNLSGTIPAQLASLNFLSVLNLSYNHL 928
           N L+      L +   L +L++S N L
Sbjct: 514 NRLTVLSHNDLPAN--LEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  130 bits (328), Expect = 5e-31
 Identities = 101/506 (19%), Positives = 173/506 (34%), Gaps = 64/506 (12%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLT--NLTTLNLSNA 115
           LDLS+  I + +    S   L  L+S++ + N      +    L  L    L+  +L+  
Sbjct: 128 LDLSKNQIRS-LYLHPSFGKLNSLKSIDFSSNQI--FLVCEHELEPLQGKTLSFFSLAAN 184

Query: 116 GFAGQIP------IQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL----LQNLAELRE 165
               ++       +       L  LD+SG  +        +  +S      L     +  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 166 LYLDGVNISAPGIEWCQALSSL----------------------VPKLQVLSLSGCFLSG 203
                 NI  P       L+                        +  L+VL+L+   ++ 
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 204 PVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTL 263
             D +   L +L V+ L  N L             +  + L    +     +    L  L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 264 ETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSI-KNLKNLSRVEFYLCNFN 322
           +TLDL  N      L   H   S+  + LS      +   ++  NL +LS         N
Sbjct: 365 QTLDLRDNA-----LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE----N 415

Query: 323 GPIPTSMSDLSQLVYLDMSFNHFSGPIPS--LHMFRNLAYLDLSYNIFTG----GISSIG 376
             I   +  +  L  L ++ N FS            +L  L L  N+        +    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 377 WEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEISNAS-SSLLDT 434
           +E L +L  + L+HN L  S+P  +F  L  ++ L L  N+     T +S+    + L+ 
Sbjct: 476 FEGLSHLQVLYLNHNYL-NSLPPGVFSHLTALRGLSLNSNRL----TVLSHNDLPANLEI 530

Query: 435 LDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVV 494
           LD+S N L  P P  F    +L +L ++ NKF+   EL       N   + ++     + 
Sbjct: 531 LDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIY 587

Query: 495 AGSSVYCFPPLLTTLSLASCKLSAIP 520
                      L +LS   C    + 
Sbjct: 588 CVYPDSFSGVSLFSLSTEGCDEEEVL 613

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  186 bits (475), Expect = 2e-50
 Identities = 101/537 (18%), Positives = 185/537 (34%), Gaps = 48/537 (8%)

Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272
            S   + L  N L          F  L  L LS C +          L  L TL L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 273 LLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFN-GPIPTSMSD 331
           +   +L  F    SL+ L+   TN + +    I +LK L  +           +P   S+
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 332 LSQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYNIFTGGISSIGWE--QLLNLFHVDL 388
           L+ L +LD+S N         L +   +  L+LS ++    ++ I     + + L  + L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 389 SHNNLGGSIPQSLFE-LPMVQHLLLADNQFDGH--VTEISNASSSLLDTLDLSDNNLEG- 444
            +N    ++ ++  + L  ++   L   +F     + +   ++   L  L + +  L   
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 445 -----PIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSV 499
                 I   F  L N+    L S       +       ++L  ++  + +         
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP------- 320

Query: 500 YCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNL 559
                 L  L+  S K     +      L  LDLS N +S +        G  S  +L+L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 560 SHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIG 619
           S N ++++    +   L  L  LD   + ++                       +  +  
Sbjct: 381 SFNGVITM--SSNFLGLEQLEHLDFQHSNLK----------------------QMS-EFS 415

Query: 620 SFMSLS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGV 677
            F+SL   I+   S               ++L VL ++ N         +       L  
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTF 474

Query: 678 LNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
           L+L +  L       F +  SL+ L++  NQL+ +        + L+ + L  N +D
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  181 bits (462), Expect = 1e-48
 Identities = 116/538 (21%), Positives = 183/538 (34%), Gaps = 76/538 (14%)

Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
           P+LQVL LS C +    D +  +L  LS + L  N + S      +  S+L  L      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKN 307
           L       I  L TL+ L++++N +    LP++  NL +LE L LS+     I    ++ 
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 308 LKNLSRVEFYL---CNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS--LHMFRNLAYLD 362
           L  +  +   L    N    I        +L  L +  N  S  +    +     L    
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 363 LSYNIFTGG-------ISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLAD 414
           L    F           S++     L +    L++ +        LF  L  V    L  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 415 NQFDGHVTEISNAS-SSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELD 473
                    + + S +     L+L +            +LK+LK L  +SNK        
Sbjct: 292 VTI----ERVKDFSYNFGWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNK---GGNAF 341

Query: 474 AIQRLRNLFRLDLSYNRLAVVA-GSSVYCFPPLLTTLSLASCKLSAIP-NLRKQTKLYHL 531
           +   L +L  LDLS N L+     S        L  L L+   +  +  N     +L HL
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 532 DLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQG 591
           D   + +  ++  +   +   +  +L++SH            + L+SL VL +  N  Q 
Sbjct: 402 DFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQE 459

Query: 592 KIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLV 651
              P                         F  L                       NL  
Sbjct: 460 NFLP-----------------------DIFTEL----------------------RNLTF 474

Query: 652 LDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQL 709
           LDLS   L  + PT   ++  S L VLN+  N L       F    SL+ + L+ N  
Sbjct: 475 LDLSQCQLEQLSPTAFNSL--SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  180 bits (458), Expect = 3e-48
 Identities = 109/531 (20%), Positives = 184/531 (34%), Gaps = 51/531 (9%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMY 140
            ++L+L+FN      + S    +   L  L+LS              ++ L TL L+G  
Sbjct: 30  TKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 141 FVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF 200
                         G    L+ L++L     N++         +  L   L+ L+++   
Sbjct: 88  IQSLA--------LGAFSGLSSLQKLVAVETNLA---SLENFPIGHL-KTLKELNVAHNL 135

Query: 201 L-SGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLT----SLYLSSCGLHGAFPE 255
           + S  +    SNL +L  + L  N + S     L     +     SL LS   ++     
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQP 194

Query: 256 KILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLIL------SATNFSGILPDSIKNL 308
              +   L  L L  N      +    Q L+ LE   L      +  N       +++ L
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 309 KNLSRVEFYLCNFNG---PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSY 365
            NL+  EF L   +     I    + L+ +    +        +          +L+L  
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVN 313

Query: 366 NIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG-HVTEI 424
                        +L +L  +  + N  G +   S  +LP ++ L L+ N          
Sbjct: 314 C----KFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 425 SNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRL 484
           S+  ++ L  LDLS N +   +  +F  L+ L+ L    +      E      LRNL  L
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 485 DLSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIP---NLRKQTKLYHLDLSDNQIS 539
           D+S+    V        F  L  L  L +A              +   L  LDLS  Q+ 
Sbjct: 427 DISHTHTRVA---FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 540 GEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
            ++    +     S   LN++ N L S+        LTSL  + LH+N   
Sbjct: 484 -QLSPTAFN-SLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  154 bits (391), Expect = 2e-39
 Identities = 104/485 (21%), Positives = 172/485 (35%), Gaps = 46/485 (9%)

Query: 72  NSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLS-NAGFAGQIPIQVSGMT 129
              +   L  LQ L           + +  +G+L  L  LN++ N   + ++P   S +T
Sbjct: 92  ALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 130 RLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVP 189
            L  LDLS          +   +L  L Q       L L    ++       + +     
Sbjct: 150 NLEHLDLSSNKIQ----SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR---- 201

Query: 190 KLQVLSLSGCFLSGPVDP-SLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
            L  L+L   F S  V    +  L  L V RL +            +  NL     S+  
Sbjct: 202 -LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG--------EFRNEGNLEKFDKSAL- 251

Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKN 307
                  + L   T+E   L+Y +     + D    L ++ +  L +     +   S   
Sbjct: 252 -------EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--Y 302

Query: 308 LKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYN- 366
                 +E   C F          L  L  L  + N       S     +L +LDLS N 
Sbjct: 303 NFGWQHLELVNCKFGQFPTLK---LKSLKRLTFTSNKGGN-AFSEVDLPSLEFLDLSRNG 358

Query: 367 IFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISN 426
           +   G  S       +L ++DLS N +  ++  +   L  ++HL    +           
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 427 ASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDL 486
            S   L  LD+S  +        F  L +L++L ++ N F      D    LRNL  LDL
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 487 SYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEI 542
           S  +L  ++ ++   F  L  L  L++AS +L ++P+    + T L  + L  N      
Sbjct: 478 SQCQLEQLSPTA---FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534

Query: 543 PNWLW 547
           P   +
Sbjct: 535 PRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  150 bits (380), Expect = 4e-38
 Identities = 103/557 (18%), Positives = 182/557 (32%), Gaps = 65/557 (11%)

Query: 382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG-HVTEISNASSSLLDTLDLSDN 440
           +  ++DLS N L      S F  P +Q L L+  +          + S   L TL L+ N
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH--LSTLILTGN 86

Query: 441 NLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVY 500
            ++     +F  L +L+ L+        ++E   I  L+ L  L++++N +        +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 501 CFPPLLTTLSLASCKLSAIPN------LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSF 554
                L  L L+S K+ +I         +       LDLS N ++   P    +I     
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI---RL 202

Query: 555 NHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSI 614
           + L L +N          I  L  L V  L   + +        N    D S      ++
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-----EGNLEKFDKSALEGLCNL 257

Query: 615 PVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQ 674
            ++      L  +           I +     TN+    L    +  +         +  
Sbjct: 258 TIEEFRLAYLDYYLD--------DIIDLFNCLTNVSSFSLVSVTIERVKD----FSYNFG 305

Query: 675 LGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ-- 732
              L L         +       SL+ L    N+       S  +   LE LDL  N   
Sbjct: 306 WQHLELVNCKFGQFPTLKLK---SLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLS 360

Query: 733 FDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWL 792
           F           + L  L L  N     I+     +    L+ +D   +           
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGV---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 793 LNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFS 852
           L+L              ++L Y  L++S         V   G+   L+ +      +  +
Sbjct: 418 LSL--------------RNLIY--LDISH----THTRVAFNGIFNGLSSL----EVLKMA 453

Query: 853 RNNFEGPIPEEM-GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQ 911
            N+F+     ++   L++L  L+LS   L    P+   +L  ++ L+++ N L       
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 912 LASLNFLSVLNLSYNHL 928
              L  L  + L  N  
Sbjct: 514 FDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  149 bits (379), Expect = 5e-38
 Identities = 111/596 (18%), Positives = 188/596 (31%), Gaps = 107/596 (17%)

Query: 333 SQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHN 391
                LD+SFN        S   F  L  LDLS       I    ++ L +L  + L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGN 86

Query: 392 NLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNL-EGPIPLSF 450
            +      +   L  +Q L+  +      +          L  L+++ N +    +P  F
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 451 FELKNLKILLLSSNKFVGTIELDAIQRLRNL----FRLDLSYNRLAVVAGSSVYCFPPL- 505
             L NL+ L LSSNK   +I    ++ L  +      LDLS N +  +       F  + 
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIR 201

Query: 506 LTTLSLASCKLS---------AIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNH 556
           L  L+L +   S          +  L     +     ++  +     + L  +   +   
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 557 LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAA--YVDYSGNNFTSSI 614
             L++      +     + LT++S   L S  I+ ++     N    +++     F    
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 615 PVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQ 674
            + + S   L+    F+ N       E   +  +L  LDLS N LS        +   + 
Sbjct: 321 TLKLKSLKRLT----FTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 675 LGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKS-LANCSVLEILDLGNNQF 733
           L  L+L  N +  T+S+ F     L  LD   + L+ M   S   +   L  LD+ +   
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 734 DDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLL 793
                               +  F G  S          L+++ +A N F          
Sbjct: 434 RV----------------AFNGIFNGLSS----------LEVLKMAGNSFQENFLPDIFT 467

Query: 794 NLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSR 853
            L             L  L                                     D S+
Sbjct: 468 EL-----------RNLTFL-------------------------------------DLSQ 479

Query: 854 NNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIP 909
              E   P     L SL  LN++ N L      +   L  ++ + L  N    + P
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  133 bits (336), Expect = 1e-32
 Identities = 89/519 (17%), Positives = 160/519 (30%), Gaps = 86/519 (16%)

Query: 434 TLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAV 493
           T    + N    IP +     + K L LS N     +   +      L  LDLS   +  
Sbjct: 11  TYQCMELNFYK-IPDNLPF--STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 494 VAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGK 551
           +   +       L+TL L    + ++        + L  L   +  ++      +  +  
Sbjct: 67  IEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK- 124

Query: 552 DSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP--------LPPNAAYV 603
            +   LN++HNL+ S + P   S+LT+L  LDL SN+IQ  I          +P     +
Sbjct: 125 -TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSL 182

Query: 604 DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNA-TNLLVLDL------SY 656
           D S N     I       + L    +   N  +  + ++       L V  L      + 
Sbjct: 183 DLSLNPMNF-IQPGAFKEIRLHKL-TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 657 NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT-VSATFPANCSLRTLDLNGNQLEGMVPK 715
             L     + L  + +  +    L   +     +   F    ++ +  L    +E +   
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD- 299

Query: 716 SLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQI 775
             +     + L+L N +F       +K+  RL     +  N F  +  P        L+ 
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-------LEF 351

Query: 776 IDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGL 835
           +DL+ N  S                                   +               
Sbjct: 352 LDLSRNGLS-----------------------FKGCCSQSDFGTTS-------------- 374

Query: 836 EMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIP-SLIGNLREI 894
                        +D S N     +      L+ L  L+  H+ L      S+  +LR +
Sbjct: 375 ----------LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 895 ESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIP 933
             LD+S  +           L+ L VL ++ N       
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.8 bits (223), Expect = 1e-18
 Identities = 50/302 (16%), Positives = 89/302 (29%), Gaps = 22/302 (7%)

Query: 59  LDLSEESISAGIDNSSSLFS-LKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGF 117
            +     +   +D+   LF+ L  + S +L        +  S      +L  +N      
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ- 318

Query: 118 AGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
                     +  L  L  +                +    +L  L  L L    +S  G
Sbjct: 319 -----FPTLKLKSLKRLTFTSN----------KGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS-PVPEFLADF 236
                   +    L+ L LS   +   +  +   L  L  +    ++L            
Sbjct: 364 CCSQSDFGT--TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL-SLETLILSAT 295
            NL  L +S      AF      L +LE L ++ N   +  LPD    L +L  L LS  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 296 NFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMF 355
               + P +  +L +L  +                 L+ L  + +  N +    P +   
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540

Query: 356 RN 357
             
Sbjct: 541 SR 542

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  166 bits (423), Expect = 2e-45
 Identities = 68/381 (17%), Positives = 150/381 (39%), Gaps = 38/381 (9%)

Query: 212 LRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYN 271
             +L+ +   +N +        AD +      L    +         +L ++  L ++  
Sbjct: 2   AATLATLPAPINQI-----FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGE 54

Query: 272 ELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSD 331
           ++   S+       +LE L L+    + I P  + NL  L+ +            +++ +
Sbjct: 55  KV--ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQN 108

Query: 332 LSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHN 391
           L+ L  L ++ ++ S  I  L     +  L+L  N     +S +    +  L ++ ++ +
Sbjct: 109 LTNLRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSPLS--NMTGLNYLTVTES 165

Query: 392 NLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFF 451
            +    P  +  L  +  L L  NQ +  ++ +++ +S  L       N +    P++  
Sbjct: 166 KVKDVTP--IANLTDLYSLSLNYNQIED-ISPLASLTS--LHYFTAYVNQITDITPVA-- 218

Query: 452 ELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL--LTTL 509
            +  L  L + +NK      L  +  L  L  L++  N++     S +     L  L  L
Sbjct: 219 NMTRLNSLKIGNNKITD---LSPLANLSQLTWLEIGTNQI-----SDINAVKDLTKLKML 270

Query: 510 SLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQ 569
           ++ S ++S I  L   ++L  L L++NQ+  E    +  +   +   L LS N +  +  
Sbjct: 271 NVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL--TNLTTLFLSQNHITDIR- 327

Query: 570 PYSISDLTSLSVLDLHSNQIQ 590
              ++ L+ +   D  +  I+
Sbjct: 328 --PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (372), Expect = 1e-38
 Identities = 67/351 (19%), Positives = 138/351 (39%), Gaps = 26/351 (7%)

Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
            +     L    ++     +   L S++ + +    + S   + +   +NL  L L+   
Sbjct: 22  AEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQ 77

Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNL 308
           +    P  +  L  L  L +  N++    +       +L  L L+  N S I    + NL
Sbjct: 78  ITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDI--SPLANL 131

Query: 309 KNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIF 368
             +  +     N N    + +S+++ L YL ++ +     +  +    +L  L L+YN  
Sbjct: 132 TKMYSLNLG-ANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNYNQI 189

Query: 369 TGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNAS 428
              IS +    L +L +     N +    P  +  +  +  L + +N+    ++ ++N S
Sbjct: 190 ED-ISPLA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSPLANLS 243

Query: 429 SSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSY 488
              L  L++  N +     +   +L  LK+L + SN+     ++  +  L  L  L L+ 
Sbjct: 244 Q--LTWLEIGTNQISDINAVK--DLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNN 296

Query: 489 NRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQIS 539
           N+L       +     L TTL L+   ++ I  L   +K+   D ++  I 
Sbjct: 297 NQLGNEDMEVIGGLTNL-TTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  146 bits (370), Expect = 2e-38
 Identities = 78/427 (18%), Positives = 157/427 (36%), Gaps = 85/427 (19%)

Query: 287 LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS 346
             TL       + I PD+  +L    R      +    +     +L  +  L ++    +
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 347 GPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPM 406
             I  +    NL YL+L+ N  T  IS +    L+ L ++ +  N +  +   +L  L  
Sbjct: 58  S-IQGIEYLTNLEYLNLNGNQITD-ISPLS--NLVKLTNLYIGTNKI--TDISALQNLTN 111

Query: 407 VQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKF 466
           ++ L L ++     ++ ++N +   + +L+L  N+    +      +  L  L ++ +K 
Sbjct: 112 LRELYLNEDNIS-DISPLANLTK--MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV 167

Query: 467 VGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPNLRK 524
                +  I  L +L+ L L+YN++       +     L  L   +    +++ I  +  
Sbjct: 168 KD---VTPIANLTDLYSLSLNYNQI-----EDISPLASLTSLHYFTAYVNQITDITPVAN 219

Query: 525 QTKLYHLDLSDNQISGEIPNWLWKIGK-DSFNHLNLSHNLLVSLEQPYSISDLTSLSVLD 583
            T+L  L + +N+I+   P     +        L +  N +  +    ++ DLT L +L+
Sbjct: 220 MTRLNSLKIGNNKITDLSP-----LANLSQLTWLEIGTNQISDIN---AVKDLTKLKMLN 271

Query: 584 LHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESI 643
           + SNQI                      S I   + +   L+     + N L     E I
Sbjct: 272 VGSNQI----------------------SDIS-VLNNLSQLNSL-FLNNNQLGNEDMEVI 307

Query: 644 CNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLD 703
              TNL  L LS N+++ + P  L ++S                           + + D
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP--LASLS--------------------------KMDSAD 339

Query: 704 LNGNQLE 710
                ++
Sbjct: 340 FANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  143 bits (362), Expect = 2e-37
 Identities = 73/387 (18%), Positives = 141/387 (36%), Gaps = 45/387 (11%)

Query: 107 LTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL--LQNLAELR 164
             TL    A      P   + +   +   L               +++ +   + L  + 
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQ------------KASVTDVVTQEELESIT 47

Query: 165 ELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND 224
           +L + G  +++      Q +  L   L+ L+L+G  ++      LSNL  L+ + +  N 
Sbjct: 48  KLVVAGEKVASI-----QGIEYL-TNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNK 99

Query: 225 LYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQN 284
           +       L + +NL  LYL+   +       +  L  + +L+L  N  L   L      
Sbjct: 100 ITDI--SALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNM 154

Query: 285 LSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNH 344
             L  L ++ +    + P  I NL +L  +           P  ++ L+ L Y     N 
Sbjct: 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210

Query: 345 FSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFEL 404
            +  I  +     L  L +  N  T          L  L  +++  N +  S   ++ +L
Sbjct: 211 ITD-ITPVANMTRLNSLKIGNNKIT---DLSPLANLSQLTWLEIGTNQI--SDINAVKDL 264

Query: 405 PMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSN 464
             ++ L +  NQ    ++ ++N S   L++L L++N L          L NL  L LS N
Sbjct: 265 TKLKMLNVGSNQISD-ISVLNNLSQ--LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 465 KFVGTIELDAIQRLRNLFRLDLSYNRL 491
                 ++  +  L  +   D +   +
Sbjct: 322 HI---TDIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (336), Expect = 5e-34
 Identities = 78/381 (20%), Positives = 151/381 (39%), Gaps = 43/381 (11%)

Query: 65  SISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQ 124
           ++ A I+       L       L     + T++ +    L ++T L ++    A    I 
Sbjct: 7   TLPAPINQIFPDADLAEGIRAVLQKA--SVTDVVT-QEELESITKLVVAGEKVASIQGI- 62

Query: 125 VSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL--LQNLAELRELYLDGVNISAPGIEWCQ 182
              +T L  L+L+G              ++ +  L NL +L  LY+    I+        
Sbjct: 63  -EYLTNLEYLNLNGN------------QITDISPLSNLVKLTNLYIGTNKITDI-----S 104

Query: 183 ALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSL 242
           AL +L   L+ L L+   +S      L+NL  +  + L  N   S     L++ + L  L
Sbjct: 105 ALQNL-TNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYL 160

Query: 243 YLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILP 302
            ++   +    P  I  L  L +L L+YN++    +       SL          + I  
Sbjct: 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQI--EDISPLASLTSLHYFTAYVNQITDI-- 214

Query: 303 DSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLD 362
             + N+  L+ ++          P  +++LSQL +L++  N  S  I ++     L  L+
Sbjct: 215 TPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLN 271

Query: 363 LSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVT 422
           +  N  +  IS +    L  L  + L++N LG    + +  L  +  L L+ N     + 
Sbjct: 272 VGSNQIS-DISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IR 327

Query: 423 EISNASSSLLDTLDLSDNNLE 443
            +++ S   +D+ D ++  ++
Sbjct: 328 PLASLSK--MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  120 bits (303), Expect = 1e-29
 Identities = 82/424 (19%), Positives = 155/424 (36%), Gaps = 81/424 (19%)

Query: 506 LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP-NWLWKIGKDSFNHLNLSHNLL 564
             TL+     ++ I       +     L    ++  +    L  I       L ++   +
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESI-----TKLVVAGEKV 56

Query: 565 VSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSL 624
            S++    I  LT+L  L+L+ NQI    P                       + + + L
Sbjct: 57  ASIQ---GIEYLTNLEYLNLNGNQITDISP-----------------------LSNLVKL 90

Query: 625 SIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN 684
           +       N +T     ++ N TNL  L L+ + +S + P  L N++  ++  LNL  N+
Sbjct: 91  TNL-YIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLT--KMYSLNLGANH 143

Query: 685 LNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNA 744
               +S        L  L +  ++++ + P  +AN + L  L L  NQ +D  P  + + 
Sbjct: 144 NLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASL 198

Query: 745 SRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGR 804
           + LH      N     I+      +   L  + + +NK +   P   L  L         
Sbjct: 199 TSLHYFTAYVNQ----ITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLT-------- 246

Query: 805 SQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM 864
                      +L +        I+  I  ++  L K+      ++   N         +
Sbjct: 247 -----------WLEIGTN----QIS-DINAVK-DLTKL----KMLNVGSNQISDI--SVL 283

Query: 865 GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLS 924
             L  L +L L++N L      +IG L  + +L LS N+++   P  LASL+ +   + +
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341

Query: 925 YNHL 928
              +
Sbjct: 342 NQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (288), Expect = 1e-27
 Identities = 67/310 (21%), Positives = 120/310 (38%), Gaps = 39/310 (12%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           L+L+   I+    + S L +L  L +L +  N        S L NLTNL  L L+    +
Sbjct: 71  LNLNGNQIT----DISPLSNLVKLTNLYIGTNKI---TDISALQNLTNLRELYLNEDNIS 123

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL--LQNLAELRELYLDGVNISAP 176
              P+  + +T++ +L+L             N NLS L  L N+  L  L +    +   
Sbjct: 124 DISPL--ANLTKMYSLNLGA-----------NHNLSDLSPLSNMTGLNYLTVTESKVK-- 168

Query: 177 GIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF 236
            +     +++L   L  LSL+   +       L++L SL      +N +    P  +A+ 
Sbjct: 169 DVT---PIANL-TDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP--VANM 220

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
           + L SL + +  +    P  +  L  L  L++  N++    +        L+ L + +  
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQ 276

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
            S I    + NL  L+ +              +  L+ L  L +S NH +  I  L    
Sbjct: 277 ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLS 333

Query: 357 NLAYLDLSYN 366
            +   D +  
Sbjct: 334 KMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  112 bits (282), Expect = 6e-27
 Identities = 75/450 (16%), Positives = 152/450 (33%), Gaps = 105/450 (23%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
             TL      +    P +  +L      +L        +     + L ++ +L ++  ++
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV 56

Query: 492 AVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGK 551
           A + G     +   L  L+L   +++ I  L    KL +L +  N+I+ +I         
Sbjct: 57  ASIQGIE---YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKIT-DISALQ---NL 109

Query: 552 DSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT 611
            +   L L+ + +  +     +++LT +  L+L +N     + PL               
Sbjct: 110 TNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNLSDLSPL--------------- 151

Query: 612 SSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMS 671
                   +   L+     +++ +  V P  I N T+L  L L+YN +  + P  L +++
Sbjct: 152 -------SNMTGLNYLT-VTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLT 199

Query: 672 DSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNN 731
              L       N +  T          L +L +  N++  +    LAN S L  L++G N
Sbjct: 200 --SLHYFTAYVNQI--TDITPVANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTN 253

Query: 732 QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKW 791
           Q  D     VK+ ++L +L + SN     IS      +   L  + L +N+         
Sbjct: 254 QISDINA--VKDLTKLKMLNVGSNQ----ISDISVLNNLSQLNSLFLNNNQLGNEDM--- 304

Query: 792 LLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDF 851
                            L +L                                    +  
Sbjct: 305 ------------EVIGGLTNLTT----------------------------------LFL 318

Query: 852 SRNNFEGPIPEEMGLLQSLCALNLSHNALT 881
           S+N+     P  +  L  + + + ++  + 
Sbjct: 319 SQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 2e-06
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 6/94 (6%)

Query: 847 TSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG 906
             ++ + N      P  +  L  L  L +  N +T    S + NL  +  L L+ +N+S 
Sbjct: 69  EYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD 124

Query: 907 TIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQS 940
             P  LA+L  +  LNL  NH +  +   + +  
Sbjct: 125 ISP--LANLTKMYSLNLGANHNLSDLSPLSNMTG 156

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  162 bits (412), Expect = 5e-43
 Identities = 108/532 (20%), Positives = 188/532 (35%), Gaps = 75/532 (14%)

Query: 262 TLETLDLSYNELLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCN 320
            L +  ++ +  +     D    L      +L  TN +  +     +L  +         
Sbjct: 2   PLGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS--QTDLDQV--TTLQADR 55

Query: 321 FNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQL 380
                   +  L+ L  ++ S N  +  I  L     L  + ++ N     I+ +    L
Sbjct: 56  LGIKSIDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIAD-ITPLA--NL 111

Query: 381 LNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASS-SLLDTLDLSD 439
            NL  + L +N +    P  L  L  +  L L+ N     +++IS  S  + L  L    
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFG- 164

Query: 440 NNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSV 499
           N +    PL+   L  L+ L +SSNK     ++  + +L NL  L  + N+++ +     
Sbjct: 165 NQVTDLKPLA--NLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISDITPLG- 218

Query: 500 YCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNL 559
                 L  LSL   +L  I  L   T L  LDL++NQIS   P             L L
Sbjct: 219 --ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT----KLTELKL 272

Query: 560 SHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSIPVD 617
             N + ++     ++ LT+L+ L+L+ NQ++  I P+    N  Y+    NN +   P  
Sbjct: 273 GANQISNIS---PLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP-- 326

Query: 618 IGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGV 677
           + S   L     F  N ++     S+ N TN+  L   +N +S + P  L N++      
Sbjct: 327 VSSLTKLQR-LFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT------ 375

Query: 678 LNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF 737
                                +  L LN            AN S+   +           
Sbjct: 376 --------------------RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA--LIA 413

Query: 738 PCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQ 789
           P  + +        +  N           + ++     I   +  FSG + Q
Sbjct: 414 PATISDGGSYTEPDITWNLPSYT---NEVSYTFSQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  161 bits (409), Expect = 1e-42
 Identities = 109/523 (20%), Positives = 187/523 (35%), Gaps = 100/523 (19%)

Query: 70  IDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMT 129
           I+   +  +L       L     N T+  S   +L  +TTL     G             
Sbjct: 14  INQIFTDTALAEKMKTVLGKT--NVTDTVS-QTDLDQVTTLQADRLGIK----------- 59

Query: 130 RLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVP 189
                 + G                  ++ L  L ++      ++   I     L +L  
Sbjct: 60  -----SIDG------------------VEYLNNLTQINFSNNQLT--DIT---PLKNL-T 90

Query: 190 KLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGL 249
           KL  + ++   ++      L+NL +L+ + L  N +     + L + +NL  L LSS  +
Sbjct: 91  KLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI 146

Query: 250 HGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLK 309
                  +  L +L+ L           L       +LE L +S+   S I    +  L 
Sbjct: 147 SD--ISALSGLTSLQQLSFGNQVT---DLKPLANLTTLERLDISSNKVSDI--SVLAKLT 199

Query: 310 NLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFT 369
           NL                          L  + N  S  I  L +  NL  L L+ N   
Sbjct: 200 NLE------------------------SLIATNNQISD-ITPLGILTNLDELSLNGNQLK 234

Query: 370 GGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASS 429
             I ++    L NL  +DL++N +    P  L  L  +  L L  NQ    ++ ++  ++
Sbjct: 235 -DIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTA 288

Query: 430 SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYN 489
             L  L+L++N LE   P+S   LKNL  L L  N       +  +  L  L RL    N
Sbjct: 289 --LTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFYNN 341

Query: 490 RLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKI 549
           +++ V+  +       +  LS    ++S +  L   T++  L L+D   +    N+    
Sbjct: 342 KVSDVSSLA---NLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYK--- 395

Query: 550 GKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGK 592
              + +  N   N+  +L  P +ISD  S +  D+  N     
Sbjct: 396 --ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (355), Expect = 2e-35
 Identities = 104/535 (19%), Positives = 186/535 (34%), Gaps = 97/535 (18%)

Query: 378 EQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDL 437
             L       L   N+  ++ Q+  +L  V  L          +  +   ++  L  ++ 
Sbjct: 21  TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI-KSIDGVEYLNN--LTQINF 75

Query: 438 SDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGS 497
           S+N L    PL    L  L  +L+++N+      +  +  L NL  L L  N++     +
Sbjct: 76  SNNQLTDITPLK--NLTKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQI-----T 125

Query: 498 SVYCFPPL--LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGK-DSF 554
            +     L  L  L L+S  +S I  L   T L  L    NQ++   P     +    + 
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-----LANLTTL 179

Query: 555 NHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSI 614
             L++S N +  +     ++ LT+L  L   +NQI   I PL                  
Sbjct: 180 ERLDISSNKVSDIS---VLAKLTNLESLIATNNQISD-ITPL------------------ 217

Query: 615 PVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQ 674
               G   +L    S + N L  +   ++ + TNL  LDL+ N +S + P  L  ++  +
Sbjct: 218 ----GILTNLDEL-SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLT--K 266

Query: 675 LGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
           L  L L  N ++           +L  L+LN NQLE + P  ++N   L  L L  N   
Sbjct: 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322

Query: 735 DTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLN 794
           D  P  V + ++L  L   +N     +S      +   +  +    N+ S   P   L  
Sbjct: 323 DISP--VSSLTKLQRLFFYNNK----VSDVSSLANLTNINWLSAGHNQISDLTPLANLTR 376

Query: 795 LEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRN 854
           +                     L L+    Q           +     ++I  ++     
Sbjct: 377 IT-------------------QLGLN---DQ-----AWTNAPVNYKANVSIPNTV--KNV 407

Query: 855 NFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIP 909
                 P  +    S    +++ N  +     +     +  ++       SGT+ 
Sbjct: 408 TGALIAPATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (354), Expect = 2e-35
 Identities = 95/435 (21%), Positives = 157/435 (36%), Gaps = 54/435 (12%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           L      I     +   +  L  L  +N + N    T+I   L NLT L  + ++N   A
Sbjct: 51  LQADRLGIK----SIDGVEYLNNLTQINFSNNQL--TDITP-LKNLTKLVDILMNNNQIA 103

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL--LQNLAELRELYLDGVNISAP 176
              P+  + +T L  L L                ++ +  L+NL  L  L L    IS  
Sbjct: 104 DITPL--ANLTNLTGLTLFNN------------QITDIDPLKNLTNLNRLELSSNTISDI 149

Query: 177 GIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF 236
                 ALS L   LQ LS             L+NL +L  + +  N +       LA  
Sbjct: 150 -----SALSGL-TSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKL 198

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
           +NL SL  ++  +    P  +  L  L+ L L+ N+L    +       +L  L L+   
Sbjct: 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQ 254

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
            S + P  +  L  L+ ++      +   P  ++ L+ L  L+++ N     I  +   +
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED-ISPISNLK 309

Query: 357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416
           NL YL L +N  +          L  L  +   +N +  S   SL  L  +  L    NQ
Sbjct: 310 NLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQ 364

Query: 417 FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQ 476
               +T ++N +   +  L L+D               N+ I     N     I    I 
Sbjct: 365 ISD-LTPLANLTR--ITQLGLNDQAWTNAPVNYK---ANVSIPNTVKNVTGALIAPATIS 418

Query: 477 RLRNLFRLDLSYNRL 491
              +    D+++N  
Sbjct: 419 DGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (346), Expect = 2e-34
 Identities = 97/519 (18%), Positives = 174/519 (33%), Gaps = 92/519 (17%)

Query: 410 LLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGT 469
            +  D   +  +   +  +        L   N+   +  +  +L  +  L          
Sbjct: 7   TITQDTPIN-QIFTDTALAE--KMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-- 59

Query: 470 IELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLY 529
             +D ++ L NL +++ S N+L  +           L  + + + +++ I  L   T L 
Sbjct: 60  -SIDGVEYLNNLTQINFSNNQLTDITPLKNL---TKLVDILMNNNQIADITPLANLTNLT 115

Query: 530 HLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQI 589
            L L +NQI+   P         + N L LS N +  +    ++S LTSL  L       
Sbjct: 116 GLTLFNNQITDIDPLKNLT----NLNRLELSSNTISDIS---ALSGLTSLQQLSF----- 163

Query: 590 QGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNL 649
                            GN  T   P  + +  +L      S N ++      +   TNL
Sbjct: 164 -----------------GNQVTDLKP--LANLTTLERL-DISSNKVSD--ISVLAKLTNL 201

Query: 650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQL 709
             L  + N +S + P  L  ++   L  L+L  N L    +    +  +L  LDL  NQ+
Sbjct: 202 ESLIATNNQISDITP--LGILT--NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI 255

Query: 710 EGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVS 769
             + P  L+  + L  L LG NQ  +  P  +   + L  L L  N     +       +
Sbjct: 256 SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ----LEDISPISN 307

Query: 770 WPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAIT 829
              L  + L  N  S   P   L  L+                    L            
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQ-------------------RLFFYNNK------ 342

Query: 830 VTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIG 889
             +  +   LA + NI   +    N      P  +  L  +  L L+  A T +  +   
Sbjct: 343 --VSDVSS-LANLTNI-NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 890 NLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
           N+  I +   ++       PA ++     +  ++++N  
Sbjct: 397 NV-SIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 50/239 (20%), Positives = 88/239 (36%), Gaps = 30/239 (12%)

Query: 70  IDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMT 129
           I N + L  L  L  L L  N    + I   L  LT LT L L+        PI  S + 
Sbjct: 255 ISNLAPLSGLTKLTELKLGANQI--SNIS-PLAGLTALTNLELNENQLEDISPI--SNLK 309

Query: 130 RLVTLDLSGMYFVRAPLKLENPNLSGL--LQNLAELRELYLDGVNISAPGIEWCQALSSL 187
            L  L L               N+S +  + +L +L+ L+     +S        +L++L
Sbjct: 310 NLTYLTLY------------FNNISDISPVSSLTKLQRLFFYNNKVSDV-----SSLANL 352

Query: 188 VPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSC 247
              +  LS     +S      L+NL  ++ + L+     +    + A+ S   ++   + 
Sbjct: 353 -TNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 248 GLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIK 306
            L    P  I    +    D+++N     +   +  +    T+    T FSG +   +K
Sbjct: 410 ALI--APATISDGGSYTEPDITWNLPSYTNEVSYTFSQ-PVTIGKGTTTFSGTVTQPLK 465

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (410), Expect = 4e-42
 Identities = 111/540 (20%), Positives = 186/540 (34%), Gaps = 68/540 (12%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGF 117
           LDLS   I+  I     L +   LQ L L  +      I      +L +L  L+LS+   
Sbjct: 31  LDLSFNKITY-I-GHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 118 AGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVN-ISAP 176
           +         ++ L  L+L G  +    +       + L  NL  L+ L +  V   S  
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGV-------TSLFPNLTNLQTLRIGNVETFSEI 139

Query: 177 GIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF 236
                  L+SL      L +    L      SL ++R +  + L +++    +  F    
Sbjct: 140 RRIDFAGLTSL----NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
           S++  L L    L       +        +          +   F++ L L   IL    
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE--- 252

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
                         LS VEF  C  NG           L   + S +     +  +    
Sbjct: 253 --------------LSEVEFDDCTLNG-----------LGDFNPSESDVVSELGKVETV- 286

Query: 357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADN 415
            +  L +          S  +  L  +  + + ++ +   +P S  + L  ++ L L++N
Sbjct: 287 TIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSEN 344

Query: 416 QFDGHVTEISNASSSL--LDTLDLSDNNLE--GPIPLSFFELKNLKILLLSSNKFVGTIE 471
                  + S    +   L TL LS N+L            LKNL  L +S N F     
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF--HPM 402

Query: 472 LDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIP-NLRKQTKLYH 530
            D+ Q    +  L+LS   + VV      C P  L  L +++  L +    L    +L  
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIRVVKT----CIPQTLEVLDVSNNNLDSFSLFL---PRLQE 455

Query: 531 LDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
           L +S N++   +P+            + +S N L S+        LTSL  + LH+N   
Sbjct: 456 LYISRNKLK-TLPDAS---LFPVLLVMKISRNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  159 bits (405), Expect = 2e-41
 Identities = 101/583 (17%), Positives = 185/583 (31%), Gaps = 111/583 (19%)

Query: 163 LRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDM 222
           ++ L L    I+  G      L +    LQVL L    ++     +  +L SL  + L  
Sbjct: 28  MKSLDLSFNKITYIGHG---DLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 223 NDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQ-LPTLETLDLSYNELLQGSLPDF 281
           N L S    +    S+L  L L            +   L  L+TL +   E         
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 282 HQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDM 340
              L SL  L + A +       S+K+++++  +  +L      +      LS + YL++
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 341 SFNH----FSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGS 396
              +       P+P   +   +  L    ++    ++   + +LL L    L  + +   
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSV----LTDESFNELLKLLRYILELSEV--- 256

Query: 397 IPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNL 456
                 +  +        ++ D  V+E+    +  +  L +    L   +   +  L+ +
Sbjct: 257 ---EFDDCTLNGLGDFNPSESD-VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 457 KILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKL 516
           K + + ++K    +     Q L++L  LDLS N +                   L +   
Sbjct: 313 KRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLM---------------VEEYLKNSAC 356

Query: 517 SAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFN-----HLNLSHNLLVSLEQPY 571
                      L  L LS N +       + K G+          L++S N    +  P 
Sbjct: 357 KGAW-----PSLQTLVLSQNHLRS-----MQKTGEILLTLKNLTSLDISRNTFHPM--PD 404

Query: 572 SISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFS 631
           S      +  L+L S  I                        +                 
Sbjct: 405 SCQWPEKMRFLNLSSTGI----------------------RVVKT--------------- 427

Query: 632 KNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA 691
                       C    L VLD+S N L       L      +L  L + RN L     A
Sbjct: 428 ------------CIPQTLEVLDVSNNNLD-SFSLFL-----PRLQELYISRNKLKTLPDA 469

Query: 692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
           +      L  + ++ NQL+ +        + L+ + L  N +D
Sbjct: 470 SLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (373), Expect = 2e-37
 Identities = 97/557 (17%), Positives = 177/557 (31%), Gaps = 69/557 (12%)

Query: 386 VDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGP 445
            D    +   SIP  L     ++ L L+ N+   ++      + + L  L L  + +   
Sbjct: 10  CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTI 65

Query: 446 IPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL 505
              +F+ L +L+ L LS N    ++       L +L  L+L  N    +  +S++     
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 506 LTTLSLASC-KLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHN 562
           L TL + +    S I        T L  L++    +       L  I     +HL L  +
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR--DIHHLTLHLS 182

Query: 563 LLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFM 622
               L        L+S+  L+L    +  +    P     V                   
Sbjct: 183 ESAFL-LEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRG-------- 232

Query: 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM------IPTCLINMSDSQLG 676
             S+    S N L   +   I   + +   D + N L         + + L  +    + 
Sbjct: 233 --SVLTDESFNELL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289

Query: 677 VLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736
            L++ +  L   +S  +     ++ + +  +++  +      +   LE LDL  N   + 
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 737 FPCW---VKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQ-KWL 792
           +            L  L+L  N+           ++   L  +D++ N F       +W 
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 409

Query: 793 LNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFS 852
             +                   RFLNLS             G+ +    I      +D S
Sbjct: 410 EKM-------------------RFLNLSS-----------TGIRVVKTCIPQTLEVLDVS 439

Query: 853 RNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQL 912
            NN +         L  L  L +S N L  ++P        +  + +S N L        
Sbjct: 440 NNNLDS-FSLF---LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493

Query: 913 ASLNFLSVLNLSYNHLV 929
             L  L  + L  N   
Sbjct: 494 DRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  137 bits (348), Expect = 3e-34
 Identities = 93/581 (16%), Positives = 175/581 (30%), Gaps = 104/581 (17%)

Query: 332 LSQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSH 390
            + +  LD+SFN  +      L    NL  L L  +     I    +  L +L H+DLS 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSD 83

Query: 391 NNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLS 449
           N+L  S+  S F  L  +++L L  N +          + + L TL + +      I   
Sbjct: 84  NHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 450 FFE-LKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTT 508
            F  L +L  L + +       +  +++ +R++  L L  +  A +          +   
Sbjct: 143 DFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV-RY 200

Query: 509 LSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLE 568
           L L    L+               +      G +          SFN L      ++ L 
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE------SFNELLKLLRYILELS 254

Query: 569 QPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFF 628
           +     D T   + D + ++                   +  +    V+  +   L I  
Sbjct: 255 E-VEFDDCTLNGLGDFNPSES------------------DVVSELGKVETVTIRRLHI-- 293

Query: 629 SFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT 688
              +  L   +         +  + +  + +  +  +   ++    L  L+L  N +   
Sbjct: 294 --PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK--SLEFLDLSENLMVEE 349

Query: 689 VSATFPANC---SLRTLDLNGNQLEGM--VPKSLANCSVLEILDLGNNQFDDTFPCWVKN 743
                       SL+TL L+ N L  M    + L     L  LD+  N F    P   + 
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408

Query: 744 ASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803
             ++  L L S                  L+++D+++N                      
Sbjct: 409 PEKMRFLNLSSTGI---RVVKTCI--PQTLEVLDVSNNNLD------------------- 444

Query: 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEE 863
                L  LQ   L +S+                      N   ++             +
Sbjct: 445 SFSLFLPRLQE--LYISR----------------------NKLKTLP------------D 468

Query: 864 MGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNL 904
             L   L  + +S N L      +   L  ++ + L  N  
Sbjct: 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (335), Expect = 1e-32
 Identities = 76/429 (17%), Positives = 148/429 (34%), Gaps = 56/429 (13%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGF 117
           L +      + I        L  L  L +           S  L ++ ++  L L  +  
Sbjct: 128 LRIGNVETFSEIRRID-FAGLTSLNELEIKALSL--RNYQSQSLKSIRDIHHLTLHLSES 184

Query: 118 AGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
           A  + I    ++ +  L+L         L     +   + +  + +++L   G  ++   
Sbjct: 185 AFLLEIFADILSSVRYLELRDTN-----LARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVD---------PSLSNLRSLSVIRLDM--NDLY 226
                 L   + +L  +    C L+G  D           L  + ++++ RL +    L+
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 227 SPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPD---FHQ 283
             +    +    +  + + +  +          L +LE LDLS N +++  L +      
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 284 NLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFN 343
             SL+TL+LS  +   +                            +  L  L  LD+S N
Sbjct: 360 WPSLQTLVLSQNHLRSM----------------------QKTGEILLTLKNLTSLDISRN 397

Query: 344 HFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE 403
            F     S      + +L+LS      GI  +       L  +D+S+NNL  S    L  
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSST----GIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPR 452

Query: 404 LPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSS 463
           L   Q L ++ N+    + + S      L  + +S N L+      F  L +L+ + L +
Sbjct: 453 L---QELYISRNKLK-TLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 464 NKFVGTIEL 472
           N +  +   
Sbjct: 507 NPWDCSCPR 515

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (262), Expect = 2e-23
 Identities = 64/415 (15%), Positives = 127/415 (30%), Gaps = 67/415 (16%)

Query: 531 LDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
            D      +  IP+ L      +   L+LS N +  +     +    +L VL L S++I 
Sbjct: 10  CDGRSRSFT-SIPSGL----TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRIN 63

Query: 591 GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLS--IFFSFSKNSLTGVIPESICNATN 648
             I                          +F SL        S N L+ +        ++
Sbjct: 64  -TIEG-----------------------DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 649 LLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA-TFPANCSLRTLDLNGN 707
           L  L+L  N     +    +  + + L  L +        +    F    SL  L++   
Sbjct: 100 LKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 708 QLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYN 767
            L     +SL +   +  L L  ++       +    S +  L LR  N           
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN----------- 207

Query: 768 VSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDA 827
                L     +             L     ++ +  S +EL  L    L LS+  + D 
Sbjct: 208 -----LARFQFSPLPVDEVSSPMKKLAFRGSVLTDE-SFNELLKLLRYILELSEVEFDD- 260

Query: 828 ITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887
              T+ GL        ++ + +                   ++  L++    L   + ++
Sbjct: 261 --CTLNGLGDFNPSESDVVSELGKVETV-------------TIRRLHIPQFYLFYDLSTV 305

Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFL 942
              L +++ + +  + +     +    L  L  L+LS N +V     ++  +   
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 2e-15
 Identities = 53/311 (17%), Positives = 105/311 (33%), Gaps = 26/311 (8%)

Query: 75  SLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTL 134
              + +     + +FN     ++   +  L+ +   + +  G     P +   ++ L  +
Sbjct: 226 KKLAFRGSVLTDESFNEL--LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 135 DLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVL 194
           +   +  +  P      +LS +   L +++ + ++   +      + Q L SL    + L
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL----EFL 339

Query: 195 SLSGCFLSGPVDPS---LSNLRSLSVIRLDMNDLYS--PVPEFLADFSNLTSLYLSSCGL 249
            LS   +      +        SL  + L  N L S     E L    NLTSL +S    
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 250 HGAFPEKILQLPTLETLDLSYNEL--LQGSLPDFHQNLSLETLILSATNFSGILPDSIKN 307
           H   P+       +  L+LS   +  ++  +P      +LE L +S  N        +  
Sbjct: 400 H-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ-----TLEVLDVSNNNLDSF-SLFLPR 452

Query: 308 LKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS-LHMFRNLAYLDLSYN 366
           L+ L     Y+           S    L+ + +S N              +L  + L  N
Sbjct: 453 LQEL-----YISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 367 IFTGGISSIGW 377
            +      I +
Sbjct: 508 PWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 1e-11
 Identities = 47/264 (17%), Positives = 92/264 (34%), Gaps = 64/264 (24%)

Query: 671 SDSQLGVLNLRRNNLNGTVSATFPANC--SLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728
           S    GV + R  +       + P+    ++++LDL+ N++  +    L  C+ L++L L
Sbjct: 3   SCDASGVCDGRSRSF-----TSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 729 GNNQF----DDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS 784
            +++      D F     +   L  L L S+N   ++S   +      L+ ++L  N + 
Sbjct: 58  KSSRINTIEGDAF----YSLGSLEHLDL-SDNHLSSLS-SSWFGPLSSLKYLNLMGNPYQ 111

Query: 785 GRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILN 844
                          +        L +LQ   L +                         
Sbjct: 112 --------------TLGVTSLFPNLTNLQT--LRIGNV---------------------E 134

Query: 845 IFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNL 904
            F+ I   R +F G        L SL  L +   +L       + ++R+I  L L ++  
Sbjct: 135 TFSEIR--RIDFAG--------LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 905 SGTIPAQLASLNFLSVLNLSYNHL 928
           +  +      L+ +  L L   +L
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNL 208

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  144 bits (366), Expect = 7e-37
 Identities = 66/437 (15%), Positives = 133/437 (30%), Gaps = 23/437 (5%)

Query: 325 IPTSMSDLSQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNL 383
           I     + ++     ++ +              N+  LDLS N  +  IS+        L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKL 60

Query: 384 FHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE 443
             ++LS N L       L  L  ++ L L +N       E+    S  ++TL  ++NN+ 
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYV----QELLVGPS--IETLHAANNNIS 112

Query: 444 GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFP 503
             +  S    +  K + L++NK    +          +  LDL  N +  V  + +    
Sbjct: 113 R-VSCSRG--QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNL 563
             L  L+L    +  +       KL  LDLS N+++  +              ++L +N 
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSA--AGVTWISLRNNK 225

Query: 564 LVSLEQPYSISDLTSLSVLDLHSNQIQ-GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFM 622
           LV +    ++    +L   DL  N    G +         V          +        
Sbjct: 226 LVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCL--INMSDSQLGVLNL 680
           ++     +       +          L   + +     G     L     + ++   ++ 
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 681 RRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCW 740
            +      +        +  TL+     L+  V       + L+                
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHA 402

Query: 741 VKNASRLHVLILRSNNF 757
            +  S L +L      +
Sbjct: 403 TEEQSPLQLLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (338), Expect = 2e-33
 Identities = 81/545 (14%), Positives = 151/545 (27%), Gaps = 78/545 (14%)

Query: 211 NLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSY 270
           N     + ++  + L   +        N+  L LS   L       +     LE L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 271 NELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMS 330
           N L      D     +L TL L+                                   + 
Sbjct: 68  NVLY--ETLDLESLSTLRTLDLNNNYV-----------------------------QELL 96

Query: 331 DLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSH 390
               +  L  + N+ S  +      +    + L+ N  T  +  +       + ++DL  
Sbjct: 97  VGPSIETLHAANNNISR-VSC-SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKL 153

Query: 391 NNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEISNASS-SLLDTLDLSDNNLEGPIPL 448
           N +       L      ++HL L  N       ++      + L TLDLS N L   +  
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNFI----YDVKGQVVFAKLKTLDLSSNKLAF-MGP 208

Query: 449 SFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTT 508
            F     +  + L +NK V  IE  A++  +NL   DL  N          +     + T
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 509 LSLASCKLSAIPNLRKQTKLYHLDLSDNQIS---GEIPNWLWKIGKDSFNHLNLSHNLLV 565
           ++  + K     N  + T                    + L  + +     L+   +   
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE 326

Query: 566 SLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLS 625
            LE      +      +D    Q                        ++   +       
Sbjct: 327 RLEC--ERENQARQREIDALKEQY----------------------RTVIDQVTLRKQAK 362

Query: 626 IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRR--- 682
           I     K +L         +       +L       +    L + ++ Q  +  LR    
Sbjct: 363 ITLEQKKKALD-----EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417

Query: 683 NNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVK 742
                 V      N ++R  D+  ++   +  ++     +    DL     + T    V 
Sbjct: 418 RYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477

Query: 743 NASRL 747
               L
Sbjct: 478 REQNL 482

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (323), Expect = 2e-31
 Identities = 73/428 (17%), Positives = 130/428 (30%), Gaps = 37/428 (8%)

Query: 184 LSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLY 243
           +     + ++  ++   L   +     +  ++  + L  N L       LA F+ L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 244 LSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPD 303
           LSS  L+      +  L TL TLDL+ N      + +     S+ETL  +  N S +   
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSCS 117

Query: 304 SIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMF---RNLAY 360
             +  KN+                     S++ YLD+  N     +    +      L +
Sbjct: 118 RGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEH 173

Query: 361 LDLSYNIFTGGISSI-GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG 419
           L+L YN     I  + G      L  +DLS N L   +         V  + L +N+   
Sbjct: 174 LNLQYN----FIYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL-- 226

Query: 420 HVTEISNASSSL--LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQR 477
               I  A      L+  DL  N         FF  KN ++  ++       +     + 
Sbjct: 227 --VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTV-KKLTGQNEEE 282

Query: 478 LRNLFRLDLSYNRLAVVAGSSVYCFPPL----LTTLSLASCKLSAIPNLR-KQTKLYHLD 532
                           +          L       LS    +   +   R  Q +   +D
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 533 LSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQP--YSISDLTSLSVLDLHSNQIQ 590
               Q    + + +    K +   L      L         + ++L       +   ++Q
Sbjct: 343 ALKEQYR-TVIDQVTL-RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ 400

Query: 591 GKIPPLPP 598
                  P
Sbjct: 401 HATEEQSP 408

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (311), Expect = 8e-30
 Identities = 67/441 (15%), Positives = 132/441 (29%), Gaps = 45/441 (10%)

Query: 506 LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNL 563
                +    L        +    +  LDLS N +S      L          LNLS N+
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNV 69

Query: 564 LVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMS 623
           L        +  L++L  LDL++N +Q ++   P +   +  + NN +    V       
Sbjct: 70  LYETL---DLESLSTLRTLDLNNNYVQ-ELLVGP-SIETLHAANNNISR---VSCSRGQG 121

Query: 624 LSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRN 683
                  + N +T +        + +  LDL  N +  +    L   S   L  LNL+ N
Sbjct: 122 KK-NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS-DTLEHLNLQYN 179

Query: 684 NLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKN 743
            +         A   L+TLDL+ N+L   +     + + +  + L NN+        ++ 
Sbjct: 180 FIYDVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 744 ASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803
           +  L    L   N F   +   +      +Q +   + K      ++             
Sbjct: 236 SQNLEHFDL-RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT------- 287

Query: 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEE 863
                  +  Y   +L   +              +L  +     ++   + +    +  E
Sbjct: 288 ----LGHYGAYCCEDLPAPFAD------------RLIALKRKEHALLSGQGSETERLECE 331

Query: 864 MGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIP---AQLASLNFLSV 920
                    ++         I  +    +   +L+     L   +       A L+    
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391

Query: 921 LNLSYNHLVGRIPTSTQLQSF 941
             +    L       + LQ  
Sbjct: 392 QAVGQIELQHATEEQSPLQLL 412

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (285), Expect = 2e-26
 Identities = 57/443 (12%), Positives = 125/443 (28%), Gaps = 34/443 (7%)

Query: 102 GNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLA 161
            N        ++++     +         +  LDLSG    +          +  L    
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS--------AADLAPFT 58

Query: 162 ELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLD 221
           +L  L L    +          L SL   L+ L L+  ++       L    S+  +   
Sbjct: 59  KLELLNLSSNVLYET-----LDLESL-STLRTLDLNNNYVQ-----ELLVGPSIETLHAA 107

Query: 222 MNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDF 281
            N++ S V    +      ++YL++  +             ++ LDL  NE+   +  + 
Sbjct: 108 NNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 282 HQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDM 340
             +  +LE L L       +          L  ++         +       + + ++ +
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221

Query: 341 SFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQS 400
             N       +L   +NL + DL  N F  G     + +   +    ++   +     Q+
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV--QTVAKQTVKKLTGQN 279

Query: 401 LFELPMVQHLLLADNQFD----GHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNL 456
             E  +           +         +          L    +  E  +          
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER-LECERENQARQ 338

Query: 457 KILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKL 516
           + +     ++  T+      R +    L+     L     +       L  TL  A  ++
Sbjct: 339 REIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

Query: 517 SAIPNLRKQTKLYHLDLSDNQIS 539
                  +Q+ L  L     +  
Sbjct: 398 ELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (261), Expect = 1e-23
 Identities = 59/414 (14%), Positives = 123/414 (29%), Gaps = 40/414 (9%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGF 117
             +++ S+   +  +S   S   ++ L+L+ N    ++I +  L   T L  LNLS+   
Sbjct: 15  EKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 118 AGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
              + +    ++ L TLDL+              N    L     +  L+    NIS   
Sbjct: 71  YETLDL--ESLSTLRTLDLNN-------------NYVQELLVGPSIETLHAANNNISRVS 115

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS-PVPEFLADF 236
               Q         + + L+   ++   D        +  + L +N++ +    E  A  
Sbjct: 116 CSRGQ-------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
             L  L L    ++     ++     L+TLDLS N+L     P+F     +  + L    
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNK 225

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFN-GPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMF 355
              I   +++  +NL   +     F+ G +    S   ++  +                 
Sbjct: 226 LVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC- 283

Query: 356 RNLAYLDLSYNIFT----GGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLL 411
                                  +   +      +    +     +          + + 
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET-ERLECERENQARQREID 342

Query: 412 LADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNK 465
               Q+   V +          TL+     L+  +         L   L  +  
Sbjct: 343 ALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 35/244 (14%), Positives = 68/244 (27%), Gaps = 63/244 (25%)

Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
             +   +  + L+  +     +   ++ LDL  N         +   ++L +L L SN  
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV- 69

Query: 758 FGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFL 817
              +       S   L+ +DL +N                              ++   L
Sbjct: 70  ---LYETLDLESLSTLRTLDLNNNYVQ--------------------ELLVGPSIET--L 104

Query: 818 NLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSH 877
           + +                       N  + +  S               Q    + L++
Sbjct: 105 HAAN----------------------NNISRVSCS-------------RGQGKKNIYLAN 129

Query: 878 NALTGSIPSLIGNLREIESLDLSMNNLSG-TIPAQLASLNFLSVLNLSYNHLVGRIPTST 936
           N +T       G    ++ LDL +N +         AS + L  LNL YN +   +    
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV 188

Query: 937 QLQS 940
               
Sbjct: 189 VFAK 192

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 8e-10
 Identities = 43/355 (12%), Positives = 87/355 (24%), Gaps = 31/355 (8%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           + L+   I+   D          +Q L+L  N  +         +   L  LNL      
Sbjct: 125 IYLANNKITMLRDLD--EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAP-----------LKLENPNLSGL---LQNLAELR 164
             +  QV    +L TLDLS                   + L N  L  +   L+    L 
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

Query: 165 ELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND 224
              L G       +             +V +++   +      +       ++       
Sbjct: 241 HFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 225 LYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKI----LQLPTLETLDLSYNELLQGSLPD 280
                  F      L     +     G+  E++            +D    +        
Sbjct: 296 CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQV 355

Query: 281 FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDM 340
             +  +  TL          + +  +    L             +  +  + S L  L  
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ-QAVGQIELQHATEEQSPLQLLRA 414

Query: 341 SFNHFSGPI--PSLHMFRNLAYLDLSYNIFTG-GISSIGWEQLLNLFHVDLSHNN 392
               +              +   D+  +  T     +   ++L     + L+  N
Sbjct: 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 20/98 (20%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMN 902
            N +     + ++ +  +        ++  L+LS N L+    + +    ++E L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 903 NLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQS 940
            L  T+   L SL+ L  L+L+ N++   +     +++
Sbjct: 69  VLYETLD--LESLSTLRTLDLNNNYV-QELLVGPSIET 103

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 5e-08
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 860 IPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLS 919
           I E            ++ ++L  ++ SL  +   ++ LDLS N LS    A LA    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 920 VLNLSYNHLVGRIPTSTQLQS 940
           +LNLS N L         L +
Sbjct: 62  LLNLSSNVLYE-TLDLESLST 81

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  139 bits (353), Expect = 3e-35
 Identities = 74/326 (22%), Positives = 125/326 (38%), Gaps = 31/326 (9%)

Query: 422 TEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNL 481
             +     +    LDL  N ++      F    +L+ L L+ N  V  +E  A   L NL
Sbjct: 24  VAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNL 82

Query: 482 FRLDLSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQ 537
             L L  NRL ++       F  L  LT L ++  K+  + +   +    L  L++ DN 
Sbjct: 83  RTLGLRSNRLKLIPLGV---FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139

Query: 538 ISGEIPNWLWKIGKDSFN------HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQG 591
           +          I   +F+       L L    L S+    ++S L  L VL L    I  
Sbjct: 140 LV--------YISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNIN- 189

Query: 592 KIPPLP----PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNAT 647
            I             ++ S   +  ++  +    ++L+   S +  +LT V   ++ +  
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT-SLSITHCNLTAVPYLAVRHLV 248

Query: 648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGN 707
            L  L+LSYN +S +  + L  +   +L  + L    L       F     LR L+++GN
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELL--RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 708 QLEGMVPKSLANCSVLEILDLGNNQF 733
           QL  +      +   LE L L +N  
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (321), Expect = 3e-31
 Identities = 75/369 (20%), Positives = 119/369 (32%), Gaps = 59/369 (15%)

Query: 236 FSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSAT 295
            +   ++         A PE I        LDL  N +   +  +F     LE L L+  
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 296 NFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSG-PIPSLHM 354
             S + P +  NL NL  +               + LS L  LD+S N            
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 355 FRNLAYLDLSYNIFTGGISSIGWE---QLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHL 410
             NL  L++  N     +  I       L +L  + L   NL  SIP      L  +  L
Sbjct: 127 LYNLKSLEVGDN----DLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVL 181

Query: 411 LLADNQFDGHVTEISN---ASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFV 467
            L           I +        L  L++S       +  +     NL  L ++     
Sbjct: 182 RLRHLNI----NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 468 GTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTK 527
             +   A++ L  L  L+LSYN ++ + GS       L                     +
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYNPISTIEGSM---LHEL--------------------LR 273

Query: 528 LYHLDLSDNQISGEIPNWLWKIGKDSFN------HLNLSHNLLVSLEQPYSISDLTSLSV 581
           L  + L   Q++         +   +F        LN+S N L +L +      + +L  
Sbjct: 274 LQEIQLVGGQLA--------VVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSVGNLET 324

Query: 582 LDLHSNQIQ 590
           L L SN + 
Sbjct: 325 LILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (314), Expect = 3e-30
 Identities = 63/363 (17%), Positives = 118/363 (32%), Gaps = 80/363 (22%)

Query: 434 TLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAV 493
            +          +P         ++L L  N+   T+  D      +L  L+L+ N ++ 
Sbjct: 15  AVLCHRKRFVA-VPEGIPT--ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSA 70

Query: 494 VAGSSVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKI 549
           V       F  L  L TL L S +L  IP       + L  LD+S+N+I          +
Sbjct: 71  VEPG---AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV--------IL 119

Query: 550 GKDSFNH------LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYV 603
               F        L +  N LV +    + S L SL  L L    +              
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKCNL-------------- 164

Query: 604 DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMI 663
                   +SIP                         E++ +   L+VL L +  ++ + 
Sbjct: 165 --------TSIP------------------------TEALSHLHGLIVLRLRHLNINAIR 192

Query: 664 PTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVL 723
                 +   +L VL +       T++       +L +L +    L  +   ++ +   L
Sbjct: 193 DYSFKRLY--RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 724 EILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISC--PRYNVSWPMLQIIDLASN 781
             L+L  N         +    RL  + L        ++   P        L++++++ N
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGG----QLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 782 KFS 784
           + +
Sbjct: 307 QLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  114 bits (288), Expect = 7e-27
 Identities = 58/339 (17%), Positives = 119/339 (35%), Gaps = 43/339 (12%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGM 139
            + L+L  N      +      +  +L  L L+    +  +     + +  L TL L   
Sbjct: 34  TRLLDLGKN--RIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 140 YFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGC 199
                P         G+   L+ L +L +    I    +        L   L+ L +   
Sbjct: 91  RLKLIP--------LGVFTGLSNLTKLDISENKIVI--LLD-YMFQDL-YNLKSLEVGDN 138

Query: 200 FLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQ 259
            L      + S L SL  + L+  +L S   E L+    L  L L    ++        +
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR 198

Query: 260 LPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLC 319
           L  L+ L++S+   L    P+    L+L +L ++  N + +   ++++L  L  +     
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

Query: 320 NFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQ 379
             +    + + +L +L  + +     +                +    F G         
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLA---------------VVEPYAFRG--------- 294

Query: 380 LLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQF 417
           L  L  +++S N L  ++ +S+F  +  ++ L+L  N  
Sbjct: 295 LNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (257), Expect = 4e-23
 Identities = 71/455 (15%), Positives = 121/455 (26%), Gaps = 146/455 (32%)

Query: 484 LDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGE 541
           +     R   V        P     L L   ++  +          L  L+L++N +S  
Sbjct: 16  VLCHRKRFVAVPEG----IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-- 69

Query: 542 IPNWLWKIGKDSFNH------LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP 595
                  +   +FN+      L L  N L  +      + L++L+ LD+  N+I   +  
Sbjct: 70  ------AVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIV-ILLD 121

Query: 596 LPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLS 655
                                    F  L                       NL  L++ 
Sbjct: 122 -----------------------YMFQDL----------------------YNLKSLEVG 136

Query: 656 YNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPK 715
            N L  +       ++   L  L L + NL    +        L  L L    +  +   
Sbjct: 137 DNDLVYISHRAFSGLN--SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 716 SLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQI 775
           S      L++L++ +  + DT          L  L +                      +
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC------------------NL 236

Query: 776 IDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGL 835
             +                              L +L  RFLNLS               
Sbjct: 237 TAVPYLAVRH-----------------------LVYL--RFLNLSY-------------- 257

Query: 836 EMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIE 895
                   N  ++I+   +            L  L  + L    L    P     L  + 
Sbjct: 258 --------NPISTIE--GSMLHE--------LLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299

Query: 896 SLDLSMNNLSGTIPAQL-ASLNFLSVLNLSYNHLV 929
            L++S N L+ T+   +  S+  L  L L  N L 
Sbjct: 300 VLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 9e-21
 Identities = 69/362 (19%), Positives = 121/362 (33%), Gaps = 67/362 (18%)

Query: 603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM 662
           V      F + +P  I       +     KN +  +  +   +  +L  L+L+ N +S +
Sbjct: 16  VLCHRKRFVA-VPEGI--PTETRLL-DLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 663 IPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722
            P    N+    L  L LR N L       F    +L  LD++ N++  ++     +   
Sbjct: 72  EPGAFNNLF--NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 723 LEILDLGNNQF----DDTFPCWVKNASRLHVLILRSNNF-------FGNISCPRYNVSWP 771
           L+ L++G+N         F       + L  L L   N          ++          
Sbjct: 130 LKSLEVGDNDLVYISHRAF----SGLNSLEQLTLEKCNLTSIPTEALSHL---------H 176

Query: 772 MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVT 831
            L ++ L     +  +       L             LK L+                  
Sbjct: 177 GLIVLRLRHLNIN-AIRDYSFKRL-----------YRLKVLEISHWPY------------ 212

Query: 832 IKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM-GLLQSLCALNLSHNALTGSIPSLIGN 890
           +  +       LN+ TS+  +  N    +P      L  L  LNLS+N ++    S++  
Sbjct: 213 LDTMTPNCLYGLNL-TSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 891 LREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGND 950
           L  ++ + L    L+   P     LN+L VLN+S N          QL +   + F    
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN----------QLTTLEESVFHSVG 320

Query: 951 RL 952
            L
Sbjct: 321 NL 322

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  134 bits (340), Expect = 4e-34
 Identities = 69/384 (17%), Positives = 132/384 (34%), Gaps = 29/384 (7%)

Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
           +D +L        + +DM              +N   +   +  +       +     +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 265 TLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGP 324
            L+L+  ++ +     F    +++ L +       + P   +N+  L+ +     + +  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 325 IPTSMSDLSQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNL 383
                 +  +L  L MS N+       +     +L  L LS N     ++ +    + +L
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHVDLSLIPSL 188

Query: 384 FHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE 443
           FH ++S+N L      +L     V+ L  + N        +    +  L  L L  NNL 
Sbjct: 189 FHANVSYNLL-----STLAIPIAVEELDASHNSI----NVVRGPVNVELTILKLQHNNLT 239

Query: 444 GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFP 503
                       L  + LS N+    I      +++ L RL +S NRL  +         
Sbjct: 240 -DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLY----GQ 292

Query: 504 PL--LTTLSLASCKLSAIP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLS 560
           P+  L  L L+   L  +  N  +  +L +L L  N I   +          +  +L LS
Sbjct: 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTHH----TLKNLTLS 347

Query: 561 HNLLVSLEQPYSISDLTSLSVLDL 584
           HN            ++   +V D 
Sbjct: 348 HNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (300), Expect = 5e-29
 Identities = 73/402 (18%), Positives = 138/402 (34%), Gaps = 70/402 (17%)

Query: 97  IPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL 156
           I S L        +++           +   +     +        + P        + L
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP--------AAL 64

Query: 157 LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLS 216
           L +                              ++++L+L+   +      + +   ++ 
Sbjct: 65  LDSF----------------------------RQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 217 VIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQ-LPTLETLDLSYNELLQ 275
            + +  N +    P    +   LT L L    L  + P  I    P L TL +S N L  
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL-- 153

Query: 276 GSLPD--FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLS 333
             + D  F    SL+ L LS+   + +    I +L +         N +  + ++++   
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA--------NVSYNLLSTLAIPI 205

Query: 334 QLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGW-EQLLNLFHVDLSHNN 392
            +  LD S N  +  +    +   L  L L +N     ++   W      L  VDLS+N 
Sbjct: 206 AVEELDASHNSINV-VRG-PVNVELTILKLQHN----NLTDTAWLLNYPGLVEVDLSYNE 259

Query: 393 LGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEISNASSSL--LDTLDLSDNNLEGPIPLS 449
           L   I    F  +  ++ L +++N+       ++     +  L  LDLS N+L   +  +
Sbjct: 260 L-EKIMYHPFVKMQRLERLYISNNRL----VALNLYGQPIPTLKVLDLSHNHLLH-VERN 313

Query: 450 FFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
             +   L+ L L  N  V T++L        L  L LS+N  
Sbjct: 314 QPQFDRLENLYLDHNSIV-TLKLST---HHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (293), Expect = 4e-28
 Identities = 69/376 (18%), Positives = 131/376 (34%), Gaps = 65/376 (17%)

Query: 431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNR 490
           +   + +     +         L N KI+   ++     +    +   R +  L+L+  +
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80

Query: 491 LAVVAGSSVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWL 546
           +  +   +   F     +  L +    +  +P    +    L  L L  N +S       
Sbjct: 81  IEEIDTYA---FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------- 130

Query: 547 WKIGKDSFNH------LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNA 600
             + +  F++      L++S+N L  +E   +    TSL  L L SN++           
Sbjct: 131 -SLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTH--------- 179

Query: 601 AYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLS 660
                          VD+    SL    + S N L+     ++     +  LD S+N ++
Sbjct: 180 ---------------VDLSLIPSLFHA-NVSYNLLS-----TLAIPIAVEELDASHNSIN 218

Query: 661 GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANC 720
            +     +      L +L L+ NNL  T +A       L  +DL+ N+LE ++       
Sbjct: 219 VVRGPVNVE-----LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 721 SVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS 780
             LE L + NN+       + +    L VL L  N+    +   R    +  L+ + L  
Sbjct: 272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL---LHVERNQPQFDRLENLYLDH 327

Query: 781 NKFSGRLPQKWLLNLE 796
           N     L       L+
Sbjct: 328 NSIV-TLKLSTHHTLK 342

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  113 bits (285), Expect = 4e-27
 Identities = 67/408 (16%), Positives = 128/408 (31%), Gaps = 70/408 (17%)

Query: 254 PEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSR 313
              +        + +           +     + + +    +    +    + + + +  
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 314 VEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGIS 373
           +             + +    +  L M FN                   L  ++F     
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR---------------YLPPHVFQN--- 115

Query: 374 SIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEISNASSSLL 432
                 +  L  + L  N+L  S+P+ +F   P +  L +++N  +  + + +  +++ L
Sbjct: 116 ------VPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSL 167

Query: 433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
             L LS N L     +    + +L    +S N       L  +     +  LD S+N + 
Sbjct: 168 QNLQLSSNRLTH---VDLSLIPSLFHANVSYNL------LSTLAIPIAVEELDASHNSIN 218

Query: 493 VVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKD 552
           VV G         LT L L    L+    L     L  +DLS N++  +I    +     
Sbjct: 219 VVRGPVN----VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFV-KMQ 272

Query: 553 SFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTS 612
               L +S+N LV+L        + +L VLDL  N +                       
Sbjct: 273 RLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHL----------------------L 308

Query: 613 SIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLS 660
            +  +   F  L        NS+   +  S      L  L LS+N   
Sbjct: 309 HVERNQPQFDRLEN-LYLDHNSIV-TLKLSTH--HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  110 bits (276), Expect = 6e-26
 Identities = 65/389 (16%), Positives = 136/389 (34%), Gaps = 64/389 (16%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGF 117
            D+  +  +  +       +L   + +    +     ++P+  L +   +  LNL++   
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLND--- 78

Query: 118 AGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
                       ++  +D                  +        +++LY+    I    
Sbjct: 79  -----------LQIEEID------------------TYAFAYAHTIQKLYMGFNAIRY-- 107

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFS 237
           +       ++ P L VL L    LS        N   L+ + +  N+L     +     +
Sbjct: 108 LPP-HVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 238 NLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNF 297
           +L +L LSS  L          +P+L   ++SYN      L      +++E L  S  + 
Sbjct: 166 SLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYN-----LLSTLAIPIAVEELDASHNSI 217

Query: 298 SGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSG-PIPSLHMFR 356
           + +       L  L      L + N      + +   LV +D+S+N             +
Sbjct: 218 NVVRGPVNVELTIL-----KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 357 NLAYLDLSYNIFTGGISSI--GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLAD 414
            L  L +S N     + ++    + +  L  +DLSHN+L   + ++  +   +++L L  
Sbjct: 273 RLERLYISNN----RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDH 327

Query: 415 NQFDGHVTEISNASSSLLDTLDLSDNNLE 443
           N        +  ++   L  L LS N+ +
Sbjct: 328 NSI----VTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 97.4 bits (243), Expect = 1e-21
 Identities = 70/402 (17%), Positives = 130/402 (32%), Gaps = 98/402 (24%)

Query: 506 LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNL 563
              ++  +  +  +P   L    ++  L+L+D QI  EI  + +     +   L +  N 
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFA-YAHTIQKLYMGFNA 104

Query: 564 LVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMS 623
           +  L  P+   ++  L+VL L  N +                      SS+P  I     
Sbjct: 105 IRYLP-PHVFQNVPLLTVLVLERNDL----------------------SSLPRGIFHNTP 141

Query: 624 LSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRN 683
                S S N+L  +  ++    T+L  L LS N L+ +  + +       L   N+  N
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI-----PSLFHANVSYN 196

Query: 684 NLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKN 743
            L+     T     ++  LD + N +  +          L IL L +N   DT   W+ N
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA--WLLN 246

Query: 744 ASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803
              L  + L  N                  ++  +  + F   + +   L +        
Sbjct: 247 YPGLVEVDLSYN------------------ELEKIMYHPFVK-MQRLERLYI-------- 279

Query: 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEE 863
            S + L  L      +                             +D S N+    +   
Sbjct: 280 -SNNRLVALNLYGQPIPT------------------------LKVLDLSHNHLLH-VERN 313

Query: 864 MGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS 905
                 L  L L HN++  ++   +     +++L LS N+  
Sbjct: 314 QPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 7e-20
 Identities = 57/378 (15%), Positives = 114/378 (30%), Gaps = 100/378 (26%)

Query: 555 NHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSI 614
            H+++    +      +    L +  ++   ++ +                        +
Sbjct: 26  VHIDMQTQDVYF---GFEDITLNNQKIVTFKNSTM----------------------RKL 60

Query: 615 PVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQ 674
           P  +          + +   +  +   +   A  +  L + +N +  + P    N+    
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP--L 118

Query: 675 LGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF- 733
           L VL L RN+L+      F     L TL ++ N LE +   +    + L+ L L +N+  
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 734 ---DDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQK 790
                  P        L    + S N    ++ P        ++ +D + N  +  +   
Sbjct: 179 HVDLSLIP-------SLFHANV-SYNLLSTLAIP------IAVEELDASHNSIN-VVRGP 223

Query: 791 WLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSID 850
             + L                     L L                        N  T   
Sbjct: 224 VNVEL-------------------TILKLQH----------------------NNLTDTA 242

Query: 851 FSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPA 910
           +  N               L  ++LS+N L   +      ++ +E L +S N L   +  
Sbjct: 243 WLLN------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 911 QLASLNFLSVLNLSYNHL 928
               +  L VL+LS+NHL
Sbjct: 290 YGQPIPTLKVLDLSHNHL 307

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  135 bits (341), Expect = 8e-34
 Identities = 97/516 (18%), Positives = 176/516 (34%), Gaps = 74/516 (14%)

Query: 77  FSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDL 136
            S  +LQ      +  N TE+P    N+ + T    + + +    P        +    L
Sbjct: 8   VSNTFLQEPLRHSS--NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 137 SGMYFVRAP-LKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLS 195
                 +A  L+L N  LS L +    L  L     +++    E  +   SL   L V +
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT----ELPELPQSLK-SLLVDN 120

Query: 196 LSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPE 255
            +   LS            L  + +  N L   +PE   + S L  + + +  L    P+
Sbjct: 121 NNLKALS-------DLPPLLEYLGVSNNQLEK-LPEL-QNSSFLKIIDVDNNSLK-KLPD 170

Query: 256 KILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVE 315
                P+LE +    N+L    LP+      L  +     +    LPD   +L+++    
Sbjct: 171 ---LPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKK-LPDLPLSLESI---- 220

Query: 316 FYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSI 375
               N        + +L  L  +    N     +P L    +L  L++  N  T      
Sbjct: 221 -VAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDL--PPSLEALNVRDNYLTDLPELP 276

Query: 376 GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTL 435
                 +L  +D+S N     + +    L    +L  + N+       + +   SL   L
Sbjct: 277 Q-----SLTFLDVSENIF-SGLSELPPNL---YYLNASSNEI----RSLCDLPPSLE-EL 322

Query: 436 DLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVA 495
           ++S+N L   +P        L+ L+ S N      EL      +NL +L + YN L    
Sbjct: 323 NVSNNKLIE-LP---ALPPRLERLIASFNHLAEVPEL-----PQNLKQLHVEYNPLR--- 370

Query: 496 GSSVYCFPPLLTTLS--LASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDS 553
                 FP +  ++     +  L+ +P L +   L  L +  N +  E P+    +    
Sbjct: 371 -----EFPDIPESVEDLRMNSHLAEVPELPQ--NLKQLHVETNPLR-EFPDIPESV---- 418

Query: 554 FNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQI 589
              L ++   +V     ++      L       +  
Sbjct: 419 -EDLRMNSERVVDPY-EFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  133 bits (338), Expect = 2e-33
 Identities = 88/510 (17%), Positives = 163/510 (31%), Gaps = 87/510 (17%)

Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQL---- 260
           ++P   +   L       ++L   +P    +  + T  Y +        P    +     
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 261 ---------PTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNL 311
                         L+L+   L   SLP+   +L  E+L+ S  + +  LP+  ++LK+L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGL--SSLPELPPHL--ESLVASCNSLT-ELPELPQSLKSL 116

Query: 312 SRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGG 371
                 L   +   P        L YL +S N     +P L     L  +D+  N     
Sbjct: 117 LVDNNNLKALSDLPP-------LLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKKL 168

Query: 372 ISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSL 431
                     +L  +   +N L       L  LP +  +   +N          +     
Sbjct: 169 PDLPP-----SLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKKLPDLPLS----- 216

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
           L+++   +N LE         L  L  +   +N      +L       +L  L++  N L
Sbjct: 217 LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYL 269

Query: 492 AVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGK 551
                + +   P  LT L ++    S +  L     LY+L+ S N+I   + +       
Sbjct: 270 -----TDLPELPQSLTFLDVSENIFSGLSELPPN--LYYLNASSNEIR-SLCDLP----- 316

Query: 552 DSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT 611
            S   LN+S+N L+ L      +    L  L    N +  ++P LP N   +    N   
Sbjct: 317 PSLEELNVSNNKLIELP-----ALPPRLERLIASFNHLA-EVPELPQNLKQLHVEYNPLR 370

Query: 612 SSIPVDIGSFMSLSI---------------FFSFSKNSLTGVIPESICNATNLLVLDLSY 656
              P    S   L +                     N L    P+      ++  L ++ 
Sbjct: 371 E-FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIP---ESVEDLRMNS 425

Query: 657 NYLSGMIPTCLINMSDSQLGVLNLRRNNLN 686
             +         + +  +L       ++ +
Sbjct: 426 ERVVDPYE--FAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  131 bits (331), Expect = 2e-32
 Identities = 90/564 (15%), Positives = 194/564 (34%), Gaps = 134/564 (23%)

Query: 379 QLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGH------------VTEISN 426
               L       +NL   +P     +        A ++++ +            V+ + +
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 427 ASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIEL-DAIQRLRNLFRLD 485
                   L+L++  L   +P       +L+ L+ S N      EL +  Q L++L   +
Sbjct: 68  CLDRQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT---ELPELPQSLKSLLVDN 120

Query: 486 LSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNW 545
            +   L+          PPLL  L +++ +L  +P L+  + L  +D+ +N +  ++P+ 
Sbjct: 121 NNLKALSD--------LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDL 171

Query: 546 LWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDY 605
              +       +   +N L  L     + +L  L+ +   +N ++ K+P LP +   +  
Sbjct: 172 PPSL-----EFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVA 222

Query: 606 SGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPT 665
             N        ++ +   L+       N L   +P+   +   L  L++  NYL+  +P 
Sbjct: 223 GNNILEE--LPELQNLPFLTTI-YADNNLLK-TLPDLPPS---LEALNVRDNYLTD-LPE 274

Query: 666 CLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEI 725
                    L  L++  N  +  +S   P   +L  L+ + N++   +     +   LE 
Sbjct: 275 LP-----QSLTFLDVSENIFS-GLSELPP---NLYYLNASSNEIRS-LCDLPPS---LEE 321

Query: 726 LDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG 785
           L++ NN+     P                                  L+ +  + N  + 
Sbjct: 322 LNVSNNKLI-ELPALPPR-----------------------------LERLIASFNHLA- 350

Query: 786 RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNI 845
            +P                     ++L+   L++                   L +  +I
Sbjct: 351 EVP------------------ELPQNLKQ--LHVE---------------YNPLREFPDI 375

Query: 846 FTSI-DFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNL 904
             S+ D   N+    +PE   L Q+L  L++  N L    P +  ++   E L ++   +
Sbjct: 376 PESVEDLRMNSHLAEVPE---LPQNLKQLHVETNPLR-EFPDIPESV---EDLRMNSERV 428

Query: 905 SGTIPAQLASLNFLSVLNLSYNHL 928
                    + + L      ++H 
Sbjct: 429 VDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.4 bits (225), Expect = 4e-19
 Identities = 77/409 (18%), Positives = 131/409 (32%), Gaps = 82/409 (20%)

Query: 74  SSLFSLKYLQSLNLAFNMFNA---------------TEIPSGLGNLTNLTTLNLSNAGFA 118
               SLK L   N      +                 ++P  L N + L  +++ N    
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLK 166

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGI 178
            ++P        L  +          P           LQNL  L  +Y D  ++     
Sbjct: 167 -KLP---DLPPSLEFIAAGNNQLEELP----------ELQNLPFLTAIYADNNSLK---- 208

Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSN 238
                L  L   L+ +      L     P L NL  L+ I  D N L   +P+      +
Sbjct: 209 ----KLPDLPLSLESIVAGNNILEEL--PELQNLPFLTTIYADNNLL-KTLPDLP---PS 258

Query: 239 LTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFS 298
           L +L +    L    PE    L  L+  +  ++ L    LP      +L  L  S+    
Sbjct: 259 LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGL--SELPP-----NLYYLNASSNEIR 310

Query: 299 GILPDSIKNLKNLSRVEFYLCNFN--GPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
             L D   +L+ L+       + N    +P       +L  L  SFNH +  +P L   +
Sbjct: 311 S-LCDLPPSLEELN------VSNNKLIELPAL---PPRLERLIASFNHLAE-VPEL--PQ 357

Query: 357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416
           NL  L + YN            + L +       N+    +P+    L   + L +  N 
Sbjct: 358 NLKQLHVEYNPLREFPDIPESVEDLRM-------NSHLAEVPELPQNL---KQLHVETNP 407

Query: 417 FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNK 465
                 E  +   S ++ L ++   +  P   +      L+  +   + 
Sbjct: 408 L----REFPDIPES-VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 1e-17
 Identities = 70/396 (17%), Positives = 124/396 (31%), Gaps = 90/396 (22%)

Query: 549 IGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP------------- 595
           +            + L  +  P    ++ S +      ++ +   PP             
Sbjct: 8   VSNTFLQEPLRHSSNLTEM--PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 596 ---LPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVL 652
              L   A  ++ +    +S +P       SL      S NSLT  +PE   +  +LLV 
Sbjct: 66  RDCLDRQAHELELNNLGLSS-LPELPPHLESLVA----SCNSLT-ELPELPQSLKSLLVD 119

Query: 653 DLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGM 712
           + +   LS + P          L  L +  N L          +  L+ +D++ N L+  
Sbjct: 120 NNNLKALSDLPP---------LLEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-K 167

Query: 713 VPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPM 772
           +P    +   LE +  GNNQ ++     ++N   L  +   +N+       P        
Sbjct: 168 LPDLPPS---LEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP------LS 216

Query: 773 LQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTI 832
           L+ I   +N     LP                    L  L    +              +
Sbjct: 217 LESIVAGNNILE-ELP----------------ELQNLPFLTT--IYADNNL--------L 249

Query: 833 KGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLR 892
           K L      +     +++   N     +PE    L  L       + L+   P+L     
Sbjct: 250 KTLPDLPPSL----EALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNL----- 299

Query: 893 EIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
               L+ S N +  ++     S   L  LN+S N L
Sbjct: 300 --YYLNASSNEIR-SLCDLPPS---LEELNVSNNKL 329

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 7e-06
 Identities = 38/238 (15%), Positives = 67/238 (28%), Gaps = 52/238 (21%)

Query: 75  SLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTL 134
            L +L +L ++    N+     +P    +L  L   +         +P     +T L   
Sbjct: 232 ELQNLPFLTTIYADNNLL--KTLPDLPPSLEALNVRDNYLT----DLPELPQSLTFLDVS 285

Query: 135 DLSGMYFVRAP-----LKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVP 189
           +         P     L   +  +  L      L EL +    +          L +L P
Sbjct: 286 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--------LPALPP 337

Query: 190 KLQVLSLSGCFLSGPVDPSLSNLRSLSV---------------IRLDMNDLYSPVPEFLA 234
           +L+ L  S   L+  V     NL+ L V                 L MN   + VPE   
Sbjct: 338 RLERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396

Query: 235 -----------------DFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQ 275
                               ++  L ++S  +   +         LE     ++    
Sbjct: 397 NLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (331), Expect = 6e-32
 Identities = 69/385 (17%), Positives = 132/385 (34%), Gaps = 25/385 (6%)

Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
           +D +L        + +DM              +N   +   +  +       +     +E
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 265 TLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGP 324
            L+L+  ++ +     F    +++ L +       + P   +N+  L+ +     + +  
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138

Query: 325 IPTSMSDLSQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNL 383
                 +  +L  L MS N+       +     +L  L LS N     ++ +    + +L
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN----RLTHVDLSLIPSL 194

Query: 384 FHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE 443
           FH ++S+N L      +L     V+ L  + N        +    +  L  L L  NNL 
Sbjct: 195 FHANVSYNLL-----STLAIPIAVEELDASHNSI----NVVRGPVNVELTILKLQHNNLT 245

Query: 444 GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFP 503
                       L  + LS N+    I      +++ L RL +S NRL  +         
Sbjct: 246 -DTA-WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPI-- 300

Query: 504 PLLTTLSLASCKLSAIP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHN 562
           P L  L L+   L  +  N  +  +L +L L  N I   +          +  +L LSHN
Sbjct: 301 PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTHH----TLKNLTLSHN 355

Query: 563 LLVSLEQPYSISDLTSLSVLDLHSN 587
                       ++   +V D   +
Sbjct: 356 DWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  120 bits (303), Expect = 2e-28
 Identities = 89/505 (17%), Positives = 171/505 (33%), Gaps = 42/505 (8%)

Query: 157 LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLS 216
           LQ      ++++D              L++     ++++     +       L + R + 
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQ----KIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 217 VIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQ-LPTLETLDLSYNELLQ 275
           ++ L+   +        A    +  LY+    +    P  + Q +P L  L L  N+L  
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-- 135

Query: 276 GSLPD--FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLS 333
            SLP   FH    L TL +S  N   I  D+ +   +L  ++         +  S+  + 
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSL--IP 192

Query: 334 QLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNL 393
            L + ++S+N  S    +L +   +  LD S+N     I+ +     + L  + L HNNL
Sbjct: 193 SLFHANVSYNLLS----TLAIPIAVEELDASHN----SINVVRGPVNVELTILKLQHNNL 244

Query: 394 GGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFEL 453
             +    L   P +  + L+ N+ +  +          L+ L +S+N L   + L    +
Sbjct: 245 --TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300

Query: 454 KNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLAS 513
             LK+L LS N  +  +E +  Q    L  L L +N +  +  S+       L  L+L+ 
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTLKLSTH----HTLKNLTLSH 354

Query: 514 CKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSI 573
                         +    + D     +I   L    +            L  L Q  ++
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQHCKIDYQL----EHGLCCKESDKPYLDRLLQYIAL 410

Query: 574 SDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKN 633
           + +       +   Q              V    +  T    V +     L    +  + 
Sbjct: 411 TSV-------VEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRA 463

Query: 634 SLTGVIPESICNATNLLVLDLSYNY 658
            +  +  E I     L  L    + 
Sbjct: 464 EVQQLTNEQIQQEQLLQGLHAEIDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  108 bits (272), Expect = 1e-24
 Identities = 66/411 (16%), Positives = 141/411 (34%), Gaps = 65/411 (15%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGF 117
            D+  +  +  +       +L   + +    +     ++P+  L +   +  LNL++   
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLND--- 84

Query: 118 AGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
                       ++  +D                  +        +++LY+    I    
Sbjct: 85  -----------LQIEEID------------------TYAFAYAHTIQKLYMGFNAIRY-- 113

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFS 237
           +       ++ P L VL L    LS        N   L+ + +  N+L     +     +
Sbjct: 114 LPP-HVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 238 NLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNF 297
           +L +L LSS  L          +P+L   ++SYN      L      +++E L  S  + 
Sbjct: 172 SLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYN-----LLSTLAIPIAVEELDASHNSI 223

Query: 298 SGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSG-PIPSLHMFR 356
           + +       L  L      L + N      + +   LV +D+S+N             +
Sbjct: 224 NVVRGPVNVELTIL-----KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 357 NLAYLDLSYNIFTGGISSI--GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLAD 414
            L  L +S N     + ++    + +  L  +DLSHN+L   + ++  +   +++L L  
Sbjct: 279 RLERLYISNN----RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDH 333

Query: 415 NQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFF-ELKNLKILLLSSN 464
           N        +  ++   L  L LS N+ +     + F  +    +     +
Sbjct: 334 NSI----VTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (256), Expect = 1e-22
 Identities = 80/492 (16%), Positives = 144/492 (29%), Gaps = 142/492 (28%)

Query: 431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNR 490
           +   + +     +         L N KI+   ++     +    +   R +  L+L+  +
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 86

Query: 491 LAVVAGSSVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWL 546
           +  +   +   F     +  L +    +  +P    +    L  L L  N +S       
Sbjct: 87  IEEIDTYA---FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS------- 136

Query: 547 WKIGKDSFNH------LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNA 600
             + +  F++      L++S+N L  +E   +    TSL  L L SN++           
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTH--------- 185

Query: 601 AYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLS 660
                          VD+                             +L   ++SYN LS
Sbjct: 186 ---------------VDLSLI-------------------------PSLFHANVSYNLLS 205

Query: 661 GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANC 720
             +           +  L+   N++N       P N  L  L L  N L       L N 
Sbjct: 206 -TLA------IPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTD--TAWLLNY 253

Query: 721 SVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS 780
             L  +DL  N+ +           RL  L + +N     ++   Y    P L+++DL+ 
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL---VALNLYGQPIPTLKVLDLSH 310

Query: 781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLA 840
           N     +                R+Q +   L+   L L                     
Sbjct: 311 NHLL-HVE---------------RNQPQFDRLEN--LYLDH------------------- 333

Query: 841 KILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLS 900
              N   ++                   +L  L LSHN    +  SL    R +    + 
Sbjct: 334 ---NSIVTLKL-------------STHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVD 375

Query: 901 MNNLSGTIPAQL 912
             +    I  QL
Sbjct: 376 DADQHCKIDYQL 387

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 96.1 bits (239), Expect = 1e-20
 Identities = 62/418 (14%), Positives = 126/418 (30%), Gaps = 91/418 (21%)

Query: 511 LASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQP 570
                     +   Q      D+  +  + ++      I  ++   +   ++ +  L   
Sbjct: 10  KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKL-PA 68

Query: 571 YSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSF 630
             +     + +L+L+  QI                        I                
Sbjct: 69  ALLDSFRQVELLNLNDLQI----------------------EEID--------------- 91

Query: 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS 690
                      +   A  +  L + +N +  + P    N+    L VL L RN+L+    
Sbjct: 92  ---------TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP--LLTVLVLERNDLSSLPR 140

Query: 691 ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVL 750
             F     L TL ++ N LE +   +    + L+ L L +N+        + +    +V 
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV- 199

Query: 751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELK 810
              S N    ++ P        ++ +D + N  +  +     + L               
Sbjct: 200 ---SYNLLSTLAIP------IAVEELDASHNSIN-VVRGPVNVEL--------------- 234

Query: 811 HLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL 870
                 L L          +T     +    +      +D S N  E  +      +Q L
Sbjct: 235 ----TILKLQH------NNLTDTAWLLNYPGL----VEVDLSYNELEKIMYHPFVKMQRL 280

Query: 871 CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
             L +S+N L  ++      +  ++ LDLS N+L   +       + L  L L +N +
Sbjct: 281 ERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (317), Expect = 9e-32
 Identities = 53/267 (19%), Positives = 97/267 (36%), Gaps = 19/267 (7%)

Query: 325 IPTSMSDLSQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNL 383
           I     + ++     ++ +              N+  LDLS N  +  IS+        L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKL 60

Query: 384 FHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE 443
             ++LS N L       L  L  ++ L L +N       E+    S  ++TL  ++NN+ 
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYV----QELLVGPS--IETLHAANNNIS 112

Query: 444 GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFP 503
             +  S    +  K + L++NK    +          +  LDL  N +  V  + +    
Sbjct: 113 R-VSCSRG--QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNL 563
             L  L+L    +  +       KL  LDLS N+++  +              ++L +N 
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSA--AGVTWISLRNNK 225

Query: 564 LVSLEQPYSISDLTSLSVLDLHSNQIQ 590
           LV +    ++    +L   DL  N   
Sbjct: 226 LVLI--EKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (301), Expect = 1e-29
 Identities = 52/365 (14%), Positives = 102/365 (27%), Gaps = 66/365 (18%)

Query: 252 AFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNL 311
           A  E        +   ++ + L Q          +++ L LS    S I    +      
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK- 59

Query: 312 SRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGG 371
                                  L  L++S N        L     L  LDL+ N     
Sbjct: 60  -----------------------LELLNLSSNVLYE-TLDLESLSTLRTLDLNNN----Y 91

Query: 372 ISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSL 431
           +  +      ++  +  ++NN+                            + +S +    
Sbjct: 92  VQELL--VGPSIETLHAANNNI----------------------------SRVSCSRGQG 121

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
              + L++N +     L       ++ L L  N+       +       L  L+L YN +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 492 AVVAGSSVYCFPPLLTTLSLASCKLSAIP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIG 550
             V G         L TL L+S KL+ +    +    +  + L +N++   I   L    
Sbjct: 182 YDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS- 236

Query: 551 KDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNF 610
             +  H +L  N           S    +  +   + +              + + G   
Sbjct: 237 -QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 611 TSSIP 615
              +P
Sbjct: 296 CEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  115 bits (290), Expect = 3e-28
 Identities = 58/349 (16%), Positives = 107/349 (30%), Gaps = 43/349 (12%)

Query: 211 NLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSY 270
           N     + ++  + L   +        N+  L LS   L       +     LE L+LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 271 NELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMS 330
           N L      D     +L TL L+                                   + 
Sbjct: 68  NVL--YETLDLESLSTLRTLDLNNNYV-----------------------------QELL 96

Query: 331 DLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSH 390
               +  L  + N+ S  +      +    + L+ N  T  +  +       + ++DL  
Sbjct: 97  VGPSIETLHAANNNISR-VSC-SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKL 153

Query: 391 NNLGG-SIPQSLFELPMVQHLLLADNQFDGHVTEIS-NASSSLLDTLDLSDNNLEGPIPL 448
           N +   +  +       ++HL L  N     + ++      + L TLDLS N L   +  
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNF----IYDVKGQVVFAKLKTLDLSSNKLAF-MGP 208

Query: 449 SFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTT 508
            F     +  + L +NK V  IE  A++  +NL   DL  N          +     + T
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 509 LSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHL 557
           ++  + K     N  + T                  +  ++     +H 
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 2e-25
 Identities = 60/289 (20%), Positives = 100/289 (34%), Gaps = 27/289 (9%)

Query: 184 LSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLY 243
           +     + ++  ++   L   +     +  ++  + L  N L       LA F+ L  L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 244 LSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPD 303
           LSS  L+      +  L TL TLDL+ N      + +     S+ETL  +  N S +   
Sbjct: 65  LSSNVLYETLD--LESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSCS 117

Query: 304 SIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMF---RNLAY 360
             +  KN+                     S++ YLD+  N     +    +      L +
Sbjct: 118 RGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEH 173

Query: 361 LDLSYNIFTGGISSI-GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG 419
           L+L YN     I  + G      L  +DLS N L   +         V  + L +N+   
Sbjct: 174 LNLQYN----FIYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKL-- 226

Query: 420 HVTEISNASSSL--LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKF 466
               I  A      L+  DL  N         FF  KN ++  ++    
Sbjct: 227 --VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (258), Expect = 4e-24
 Identities = 57/402 (14%), Positives = 106/402 (26%), Gaps = 114/402 (28%)

Query: 430 SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYN 489
           +      ++D++L+  +        N+K L LS N     I    +     L  L+LS N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN 68

Query: 490 RLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKI 549
                                     L    +L   + L  LDL++N +           
Sbjct: 69  -------------------------VLYETLDLESLSTLRTLDLNNNYVQ---------- 93

Query: 550 GKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNN 609
                                  +    S+  L   +N I                    
Sbjct: 94  ----------------------ELLVGPSIETLHAANNNI-------------------- 111

Query: 610 FTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLIN 669
             S +                + N +T +        + +  LDL  N +  +    L  
Sbjct: 112 --SRVSCSR--GQGKK-NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 670 MSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG 729
            S   L  LNL+ N +         A   L+TLDL+ N+L   +     + + +  + L 
Sbjct: 167 SS-DTLEHLNLQYNFIYDVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 730 NNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQ 789
           NN+        ++ +  L                             DL  N F     +
Sbjct: 223 NNKLV-LIEKALRFSQNLEHF--------------------------DLRGNGFHCGTLR 255

Query: 790 KWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVT 831
            +    + +     ++  +L         +    +  A    
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 48/348 (13%), Positives = 101/348 (29%), Gaps = 34/348 (9%)

Query: 97  IPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL 156
           I     N        ++++     +         +  LDLSG    +          +  
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS--------AAD 53

Query: 157 LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLS 216
           L    +L  L L    +          L SL   L+ L L+  ++       L    S+ 
Sbjct: 54  LAPFTKLELLNLSSNVLYET-----LDLESL-STLRTLDLNNNYVQ-----ELLVGPSIE 102

Query: 217 VIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQG 276
            +    N++ S V    +      ++YL++  +             ++ LDL  NE+   
Sbjct: 103 TLHAANNNI-SRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 277 SLPDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQL 335
           +  +   +  +LE L L       +          L  ++         +       + +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216

Query: 336 VYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGG 395
            ++ +  N       +L   +NL + DL  N F  G     + +   +  V         
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 396 SIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE 443
              +    +P + H         G        +      + L  ++  
Sbjct: 277 GQNEEECTVPTLGHY--------GAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 7e-19
 Identities = 48/257 (18%), Positives = 105/257 (40%), Gaps = 41/257 (15%)

Query: 673 SQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ 732
           ++  +  +  ++L   +++   +  +++ LDL+GN L  +    LA  + LE+L+L +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 733 FDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWL 792
             +T    +++ S L  L L +NN+   +         P ++ +  A+N  S R+     
Sbjct: 70  LYETLD--LESLSTLRTLDL-NNNYVQELLVG------PSIETLHAANNNIS-RVSCSRG 119

Query: 793 LNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFS 852
                                 + + L+     + IT+     E   +++      +D  
Sbjct: 120 QGK-------------------KNIYLA----NNKITMLRDLDEGCRSRV----QYLDLK 152

Query: 853 RNNFEG-PIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQ 911
            N  +     E      +L  LNL +N +   +   +    ++++LDLS N L+  +  +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPE 209

Query: 912 LASLNFLSVLNLSYNHL 928
             S   ++ ++L  N L
Sbjct: 210 FQSAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.6 bits (215), Expect = 2e-18
 Identities = 57/335 (17%), Positives = 115/335 (34%), Gaps = 35/335 (10%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGF 117
             +++ S+   +  +S   S   ++ L+L+ N    ++I +  L   T L  LNLS+   
Sbjct: 15  EKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 118 AGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
              + +    ++ L TLDL+              N    L     +  L+    NIS   
Sbjct: 71  YETLDL--ESLSTLRTLDLNN-------------NYVQELLVGPSIETLHAANNNISR-- 113

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS-PVPEFLADF 236
           +       S     + + L+   ++   D        +  + L +N++ +    E  A  
Sbjct: 114 VS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
             L  L L    ++     ++     L+TLDLS N+L     P+F     +  + L    
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNK 225

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFN-GPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMF 355
              I   +++  +NL   +     F+ G +    S   ++  +                 
Sbjct: 226 LVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE-- 282

Query: 356 RNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSH 390
             +  L          + +   ++L+ L H    H
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 60/304 (19%), Positives = 99/304 (32%), Gaps = 51/304 (16%)

Query: 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS 690
           + +SL   +     +A N+  LDLS N LS +    L     ++L +LNL  N L    +
Sbjct: 18  TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVL--YET 73

Query: 691 ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF----DDTFPCWVKNASR 746
               +  +LRTLDLN N ++      L     +E L   NN                   
Sbjct: 74  LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQ-------G 121

Query: 747 LHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ 806
              + L +NN    +           +Q +DL  N+                 V+     
Sbjct: 122 KKNIYL-ANNKITMLR-DLDEGCRSRVQYLDLKLNEID--------------TVNFAELA 165

Query: 807 SELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGL 866
           +    L++  LNL        I      +     K L      D S N     +  E   
Sbjct: 166 ASSDTLEH--LNLQYN----FIYDVKGQVVFAKLKTL------DLSSNKLAF-MGPEFQS 212

Query: 867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS-GTIPAQLASLNFLSVLNLSY 925
              +  ++L +N L   I   +   + +E  DL  N    GT+    +    +  +    
Sbjct: 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 926 NHLV 929
              +
Sbjct: 272 VKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 860 IPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLS 919
           I E            ++ ++L  ++ SL  +   ++ LDLS N LS    A LA    L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 920 VLNLSYNHLVGRIPTSTQLQS 940
           +LNLS N L         L +
Sbjct: 62  LLNLSSNVLYE-TLDLESLST 81

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 883 SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
           +I  +  N    +   ++ ++L   + +   S   +  L+LS N L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL 46

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  120 bits (303), Expect = 7e-30
 Identities = 57/389 (14%), Positives = 100/389 (25%), Gaps = 77/389 (19%)

Query: 299 GILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNL 358
           G       +      + F       P    +S   +    D +  H +    + +   N 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN---NP 58

Query: 359 AYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFD 418
                +          +          ++L    L    P   F L              
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRL-------------- 103

Query: 419 GHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIEL-DAIQR 477
                      S L  + +    L   +P +  +   L+ L L+ N       L  +I  
Sbjct: 104 -----------SHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR---ALPASIAS 148

Query: 478 LRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQ 537
           L  L  L +                 P LT L        A    +    L  L L    
Sbjct: 149 LNRLRELSIRAC--------------PELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

Query: 538 ISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP 597
           I   +P  +  +   +   L + ++ L +L    +I  L  L  LDL             
Sbjct: 195 IR-SLPASIANL--QNLKSLKIRNSPLSAL--GPAIHHLPKLEELDL------------- 236

Query: 598 PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN 657
                    G     + P   G    L        ++L   +P  I   T L  LDL   
Sbjct: 237 --------RGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGC 287

Query: 658 YLSGMIPTCLINMSDSQLGVLNLRRNNLN 686
                +P+ +  +      ++ +  +   
Sbjct: 288 VNLSRLPSLIAQL--PANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (284), Expect = 2e-27
 Identities = 59/368 (16%), Positives = 105/368 (28%), Gaps = 68/368 (18%)

Query: 101 LGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNL 160
             + +    L    +         +S   R    D +              + +    N 
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNR------------WHSAWRQANS 55

Query: 161 AELRELYLDGVNISA--PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVI 218
              +     G  + A    +E         P    L L               L      
Sbjct: 56  NNPQIETRTGRALKATADLLEDAT-----QPGRVALELRSV-----------PLPQF--- 96

Query: 219 RLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSL 278
                      P+     S+L  + + + GL    P+ + Q   LETL L+ N L   +L
Sbjct: 97  -----------PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL--RAL 142

Query: 279 PDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVY 337
           P    +L  L  L + A      LP+ + +                        L  L  
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTD---------------ASGEHQGLVNLQS 187

Query: 338 LDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSI 397
           L + +        S+   +NL  L +  +  +    +I    L  L  +DL       + 
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNY 245

Query: 398 PQSLFELPMVQHLLLAD-NQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNL 456
           P        ++ L+L D +       +I   +   L+ LDL        +P    +L   
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ--LEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 457 KILLLSSN 464
            I+L+  +
Sbjct: 304 CIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (258), Expect = 6e-24
 Identities = 54/333 (16%), Positives = 97/333 (29%), Gaps = 65/333 (19%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
                 +D N             N +I   +      T +L           L+L    L
Sbjct: 35  WQRHYNADRNRWHS-AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 492 AVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGK 551
                     FP     L                + L H+ +    +  E+P+ + +   
Sbjct: 94  PQ--------FPDQAFRL----------------SHLQHMTIDAAGLM-ELPDTMQQFA- 127

Query: 552 DSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT 611
                L L+ N L +L  P SI+ L  L  L +                           
Sbjct: 128 -GLETLTLARNPLRAL--PASIASLNRLRELSI---------------------RACPEL 163

Query: 612 SSIPVDIGSFMSLSIF--------FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMI 663
           + +P  + S  +                   +   +P SI N  NL  L +  + LS  +
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-L 221

Query: 664 PTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDL-NGNQLEGMVPKSLANCSV 722
              + ++   +L  L+LR           F     L+ L L + + L   +P  +   + 
Sbjct: 222 GPAIHHL--PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQ 278

Query: 723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSN 755
           LE LDL         P  +       ++++  +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 1e-23
 Identities = 62/358 (17%), Positives = 110/358 (30%), Gaps = 56/358 (15%)

Query: 191 LQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLH 250
            + L   G     P    LS  +       +               SN   +   +    
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-----SNNPQIETRTGRAL 68

Query: 251 GAFPEKI--LQLPTLETLDLSYNELLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKN 307
            A  + +     P    L+L    L     PD    L  L+ + + A      LPD+++ 
Sbjct: 69  KATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ 125

Query: 308 LKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNI 367
              L  +          +P S++ L++L  L +        +P       LA  D S   
Sbjct: 126 FAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPE-----PLASTDASGEH 179

Query: 368 FTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNA 427
                     + L+NL  + L    +  S+P S+  L  ++ L + ++        I + 
Sbjct: 180 ----------QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228

Query: 428 SSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLS 487
               L+ LDL         P  F     LK L+L     + T+    I RL  L +LDL 
Sbjct: 229 PK--LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLR 285

Query: 488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQISGEIPN 544
                                       LS +P+ + +      + +  +  +    +
Sbjct: 286 GCV------------------------NLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.2 bits (248), Expect = 1e-22
 Identities = 57/295 (19%), Positives = 98/295 (33%), Gaps = 36/295 (12%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
              +  ++ A  D            +L L        + P     L++L  + +  AG  
Sbjct: 61  ETRTGRALKATADLLEDATQPG-RVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGI 178
            ++P  +     L TL L+       P  + +         L  LREL +          
Sbjct: 118 -ELPDTMQQFAGLETLTLARNPLRALPASIAS---------LNRLRELSIRACP------ 161

Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSN 238
                      +L  L                 L +L  +RL+   + S +P  +A+  N
Sbjct: 162 -----------ELTELPEPLASTDAS--GEHQGLVNLQSLRLEWTGIRS-LPASIANLQN 207

Query: 239 LTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL-SLETLILSATNF 297
           L SL + +  L  A    I  LP LE LDL     L+ + P        L+ LIL   + 
Sbjct: 208 LKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSN 265

Query: 298 SGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSL 352
              LP  I  L  L +++   C     +P+ ++ L     + +  +  +      
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.7 bits (244), Expect = 4e-22
 Identities = 52/301 (17%), Positives = 91/301 (30%), Gaps = 42/301 (13%)

Query: 74  SSLFSLKYLQSLNLAFNMFNA-TEIPSGLGNLT--NLTTLNLSNAGFAGQIPIQVSGMTR 130
            S +      +  +      A       L + T      L L +     Q P Q   ++ 
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH 105

Query: 131 LVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGIEWCQALSSLV 188
           L  + +     +          L   +Q  A L  L L    + A    I          
Sbjct: 106 LQHMTIDAAGLME---------LPDTMQQFAGLETLTLARNPLRALPASIASLN------ 150

Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
            +L+ LS+  C     +   L++  +                       NL SL L   G
Sbjct: 151 -RLRELSIRACPELTELPEPLASTDA---------------SGEHQGLVNLQSLRLEWTG 194

Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKN 307
           +  + P  I  L  L++L +  + L   +L     +L  LE L L         P     
Sbjct: 195 IR-SLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251

Query: 308 LKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYN 366
              L R+    C+    +P  +  L+QL  LD+        +P  +        + +  +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 367 I 367
           +
Sbjct: 312 L 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.8 bits (226), Expect = 8e-20
 Identities = 51/337 (15%), Positives = 101/337 (29%), Gaps = 51/337 (15%)

Query: 603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM 662
           + + G+         +  +           +S          N+ N  +   +   L   
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHS-----AWRQANSNNPQIETRTGRALK-A 70

Query: 663 IPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANC----SLRTLDLNGNQLEGMVPKSLA 718
               L + +      L LR   L       FP        L+ + ++   L   +P ++ 
Sbjct: 71  TADLLEDATQPGRVALELRSVPLP-----QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQ 124

Query: 719 NCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNN-------FFGNISCPRYNVSWP 771
             + LE L L  N      P  + + +RL  L +R+            +      +    
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 772 MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVT 831
            LQ + L        LP                S + L++L+   L +  +         
Sbjct: 184 NLQSLRLEWTGIR-SLPA---------------SIANLQNLKS--LKIRNSP-------- 217

Query: 832 IKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNL 891
           +  L   +  +  +   +D          P   G    L  L L   +   ++P  I  L
Sbjct: 218 LSALGPAIHHLPKL-EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 892 REIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
            ++E LDL        +P+ +A L    ++ +  +  
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 9e-18
 Identities = 52/412 (12%), Positives = 102/412 (24%), Gaps = 103/412 (25%)

Query: 506 LTTLSLASC-KLSAIPN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNL 563
              L       L    + L +  + Y+ D +    +    N       ++      +   
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS------NNPQIETRTGRA 67

Query: 564 LVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMS 623
           L +       +       L+L S  +                         P        
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLP----------------------QFPDQAFRLSH 105

Query: 624 LSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRN 683
           L    +     L   +P+++     L  L L+ N L   +P  + +++  +L  L++R  
Sbjct: 106 L-QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLN--RLRELSIRAC 160

Query: 684 NLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKN 743
                          L  L       +            L+ L L       + P  + N
Sbjct: 161 P-------------ELTELPEPLASTD--ASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204

Query: 744 ASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803
              L  L +R++      +        P L+ +DL         P               
Sbjct: 205 LQNLKSLKIRNSPL---SALGPAIHHLPKLEELDLRGCTALRNYPP-------------- 247

Query: 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEE 863
                   L+   L L                                  +N    +P +
Sbjct: 248 -IFGGRAPLKR--LILK-------------------------------DCSNLLT-LPLD 272

Query: 864 MGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL 915
           +  L  L  L+L        +PSLI  L     + +  +  +     +  + 
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 45/195 (23%)

Query: 70  IDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMT 129
            D S     L  LQSL L +       +P+ + NL NL +L + N+  +  +   +  + 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP 229

Query: 130 RLVTLDLSGMYFVRAPLKLENPNLSGL---LQNLAELRELYLDGVNISAPGIEWCQALSS 186
           +L  LDL G              L          A L+ L L   +           L +
Sbjct: 230 KLEELDLRG-----------CTALRNYPPIFGGRAPLKRLILKDCS----------NLLT 268

Query: 187 LVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSS 246
           L                P    +  L  L  + L      S +P  +A       + +  
Sbjct: 269 L----------------P--LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

Query: 247 CGLHGAFPEKILQLP 261
                    + +  P
Sbjct: 311 HLQAQLDQHRPVARP 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  123 bits (311), Expect = 2e-29
 Identities = 80/379 (21%), Positives = 137/379 (36%), Gaps = 50/379 (13%)

Query: 421 VTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRN 480
           V ++    ++    L++ ++ L   +P       ++  L++  N       L A      
Sbjct: 31  VQKMRACLNNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT---SLPA--LPPE 82

Query: 481 LFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISG 540
           L  L++S N+L     +S+   PP L  LS+ S  L+ +P L   + L  L +  NQ++ 
Sbjct: 83  LRTLEVSGNQL-----TSLPVLPPGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLT- 134

Query: 541 EIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNA 600
            +P             L++S N L SL  P   S+L     L  ++NQ+   +P LP   
Sbjct: 135 SLPVLP-----PGLQELSVSDNQLASL--PALPSELCK---LWAYNNQLT-SLPMLPSGL 183

Query: 601 AYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLS 660
             +  S N    S+P        L        N LT  +P      + L  L +S N L+
Sbjct: 184 QELSVSDNQLA-SLPTLPSELYKLWA----YNNRLT-SLPALP---SGLKELIVSGNRLT 234

Query: 661 GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPAN-CSLRTLDLNGNQLEGMVPKSLAN 719
             +P        S+L  L +  N L      + P     L +L +  NQL   +P+SL +
Sbjct: 235 S-LPVLP-----SELKELMVSGNRLT-----SLPMLPSGLLSLSVYRNQLT-RLPESLIH 282

Query: 720 CSVLEILDLGNNQFDDTFPCWVKNASRLHVLIL-RSNNFFGNISCPRYNVSWPMLQIIDL 778
            S    ++L  N   +     ++  +                 S PR   +  +     L
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 779 ASNKFSGRLPQKWLLNLEA 797
              +     P         
Sbjct: 343 VPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (274), Expect = 8e-25
 Identities = 72/352 (20%), Positives = 115/352 (32%), Gaps = 76/352 (21%)

Query: 263 LETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFN 322
              L++  + L   +LPD      + TL++   N +  LP     L+ L        + N
Sbjct: 42  NAVLNVGESGL--TTLPDCLPA-HITTLVIPDNNLT-SLPALPPELRTLE------VSGN 91

Query: 323 G--PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQL 380
               +P     L +L        H    +P+L     L  L +  N  T           
Sbjct: 92  QLTSLPVLPPGLLELSIFSNPLTH----LPALP--SGLCKLWIFGNQLTSLPVLPP---- 141

Query: 381 LNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDN 440
             L  + +S N L  S+P    EL     L   +NQ     T +    S L   L +SDN
Sbjct: 142 -GLQELSVSDNQLA-SLPALPSEL---CKLWAYNNQL----TSLPMLPSGL-QELSVSDN 191

Query: 441 NLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVY 500
            L   +P    EL  L      +N+      L A+     L  L +S NRL         
Sbjct: 192 QLAS-LPTLPSELYKLWAY---NNRL---TSLPAL--PSGLKELIVSGNRLT-------- 234

Query: 501 CFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLS 560
             P L +                   +L  L +S N+++  +P     +       L++ 
Sbjct: 235 SLPVLPS-------------------ELKELMVSGNRLT-SLPMLPSGL-----LSLSVY 269

Query: 561 HNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTS 612
            N L  L  P S+  L+S + ++L  N +  +                    
Sbjct: 270 RNQLTRL--PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (263), Expect = 2e-23
 Identities = 78/359 (21%), Positives = 121/359 (33%), Gaps = 47/359 (13%)

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
           +    L +   GL    P+ +     + TL +  N L   SLP     L   TL +S   
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT--SLPALPPEL--RTLEVSGNQ 92

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
            +  LP     L  LS       N    +P      S L  L +  N  +  +P L    
Sbjct: 93  LT-SLPVLPPGLLELSI----FSNPLTHLPAL---PSGLCKLWIFGNQLTS-LPVL--PP 141

Query: 357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416
            L  L +S N      +         L  +   +N L  S+P     L   Q L ++DNQ
Sbjct: 142 GLQELSVSDNQLASLPALPS-----ELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQ 192

Query: 417 FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQ 476
                  +    S L   L   +N L   +P        LK L++S N+      L    
Sbjct: 193 L----ASLPTLPSELY-KLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---- 239

Query: 477 RLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIP-NLRKQTKLYHLDLSD 535
               L  L +S NRL     +S+   P  L +LS+   +L+ +P +L   +    ++L  
Sbjct: 240 -PSELKELMVSGNRL-----TSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293

Query: 536 NQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIP 594
           N +S      L +I         +    +     P     L   +   L   +     P
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.3 bits (224), Expect = 1e-18
 Identities = 75/393 (19%), Positives = 127/393 (32%), Gaps = 101/393 (25%)

Query: 556 HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIP 615
            LN+  + L +L  P  +     ++ L +  N +   +P LPP    ++ SGN  TS +P
Sbjct: 44  VLNVGESGLTTL--PDCL--PAHITTLVIPDNNLT-SLPALPPELRTLEVSGNQLTS-LP 97

Query: 616 VDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQL 675
           V     + LSIF S     L  +        + L  L +  N L+  +P          L
Sbjct: 98  VLPPGLLELSIF-SNPLTHLPALP-------SGLCKLWIFGNQLTS-LPVLP-----PGL 143

Query: 676 GVLNLRRNNLNGTVSATFPAN-CSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
             L++  N L      + PA    L  L    NQL   +P   +    L+ L + +NQ  
Sbjct: 144 QELSVSDNQLA-----SLPALPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA 194

Query: 735 DTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLN 794
            + P       +L     R  +     S          L+ + ++ N+ +  LP      
Sbjct: 195 -SLPTLPSELYKLWAYNNRLTSLPALPSG---------LKELIVSGNRLT-SLP------ 237

Query: 795 LEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRN 854
                            L+   L +S                                  
Sbjct: 238 ------------VLPSELKE--LMVS---------------------------------G 250

Query: 855 NFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS---GTIPAQ 911
           N    +P     L SL   ++  N LT  +P  + +L    +++L  N LS        +
Sbjct: 251 NRLTSLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306

Query: 912 LASLNFLSVLNLSYNHLVGRIPTSTQLQSFLAT 944
           + S    S   + ++      P  T+     A 
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.0 bits (223), Expect = 1e-18
 Identities = 73/385 (18%), Positives = 112/385 (29%), Gaps = 68/385 (17%)

Query: 104 LTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAEL 163
                 LN+  +G    +P  +     + TL +               NL+ L     EL
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDN------------NLTSLPALPPEL 83

Query: 164 RELYLDGVNISA-PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDM 222
           R L + G  +++ P          L+ +L + S     L        S L  L    +  
Sbjct: 84  RTLEVSGNQLTSLP-----VLPPGLL-ELSIFSNPLTHLP----ALPSGLCKLW---IFG 130

Query: 223 NDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFH 282
           N L S +P        L  L +S   L  + P        L  L    N+L   SLP   
Sbjct: 131 NQLTS-LPVLP---PGLQELSVSDNQL-ASLPA---LPSELCKLWAYNNQL--TSLPM-- 178

Query: 283 QNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSF 342
               L+ L +S    +  LP     L  L        N    +P      S L  L +S 
Sbjct: 179 LPSGLQELSVSDNQLA-SLPTLPSELYKLWA----YNNRLTSLPAL---PSGLKELIVSG 230

Query: 343 NHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLF 402
           N  +  +P L     L  L +S N  T             L  + +  N L   +P+SL 
Sbjct: 231 NRLTS-LPVL--PSELKELMVSGNRLTSLPMLPS-----GLLSLSVYRNQL-TRLPESLI 281

Query: 403 ELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNL------EGPIPLSFFELKNL 456
            L     + L  N      +E +  +   + +       +          P     L   
Sbjct: 282 HLSSETTVNLEGNPL----SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

Query: 457 KILLLSSNKFVGTIELDAIQRLRNL 481
               L   +       D        
Sbjct: 338 AADWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.5 bits (214), Expect = 2e-17
 Identities = 84/405 (20%), Positives = 128/405 (31%), Gaps = 63/405 (15%)

Query: 82  LQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYF 141
              LN+  +    T +P  L    ++TTL + +      +P   +    L TL++SG   
Sbjct: 42  NAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLT-SLP---ALPPELRTLEVSGNQL 93

Query: 142 VRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFL 201
                     +L  L   L EL        +           L +L   L  L + G  L
Sbjct: 94  T---------SLPVLPPGLLELSIFSNPLTH-----------LPALPSGLCKLWIFGNQL 133

Query: 202 SGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLP 261
           +  +      L+ LS   +  N L S      A  S L  L+  +  L  + P       
Sbjct: 134 TS-LPVLPPGLQELS---VSDNQLAS----LPALPSELCKLWAYNNQLT-SLPMLP---S 181

Query: 262 TLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNF 321
            L+ L +S N+L   SLP     L    L       +  LP     LK L        N 
Sbjct: 182 GLQELSVSDNQL--ASLPTLPSEL--YKLWAYNNRLTS-LPALPSGLKELIV----SGNR 232

Query: 322 NGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLL 381
              +P      S+L  L +S N  +  +P L     L  L +  N  T    S+    L 
Sbjct: 233 LTSLPVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLTRLPESLI--HLS 284

Query: 382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLD--TLDLSD 439
           +   V+L  N L     Q+L E+           +FD         + +L       L  
Sbjct: 285 SETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344

Query: 440 NNLEGPIPL----SFFELKNLKILLLSSNKFVGTIELDAIQRLRN 480
                P P      F +  N     L  ++   T         + 
Sbjct: 345 AREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKA 389

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 3e-17
 Identities = 60/288 (20%), Positives = 97/288 (33%), Gaps = 54/288 (18%)

Query: 78  SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLS 137
               L++L ++ N    T +P     L  L+  +         +P   SG   L  L + 
Sbjct: 79  LPPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNPLT----HLPALPSG---LCKLWIF 129

Query: 138 GMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLS 197
           G              L+ L      L+EL +    ++        +L +L  +L  L   
Sbjct: 130 GN------------QLTSLPVLPPGLQELSVSDNQLA--------SLPALPSELCKLWAY 169

Query: 198 GCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKI 257
              L+  +    S L+ LS   +  N L S +P      S L  L+  +  L  + P   
Sbjct: 170 NNQLTS-LPMLPSGLQELS---VSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA-- 218

Query: 258 LQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFY 317
                L+ L +S N L   SLP       L+ L++S    +  LP     L +LS     
Sbjct: 219 -LPSGLKELIVSGNRL--TSLPVLPSE--LKELMVSGNRLT-SLPMLPSGLLSLS----- 267

Query: 318 LCNFNG--PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDL 363
               N    +P S+  LS    +++  N  S            A    
Sbjct: 268 -VYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 72.6 bits (178), Expect = 3e-13
 Identities = 51/293 (17%), Positives = 90/293 (30%), Gaps = 48/293 (16%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
                  + A             L  L +  N    T +P     L  L+  +   A   
Sbjct: 109 FSNPLTHLPALPSG---------LCKLWIFGNQL--TSLPVLPPGLQELSVSDNQLASLP 157

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAP--------LKLENPNLSGLLQNLAELRELYLDG 170
                       L  L          P        L + +  L+ L    +EL +L+   
Sbjct: 158 ALPS-------ELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYN 210

Query: 171 VNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVP 230
             +++        L +L   L+ L +SG  L+  +    S L+ L    +  N L S +P
Sbjct: 211 NRLTS--------LPALPSGLKELIVSGNRLTS-LPVLPSELKELM---VSGNRLTS-LP 257

Query: 231 EFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETL 290
                 S L SL +    L    PE ++ L +  T++L  N L + +L    +  S    
Sbjct: 258 MLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGY 313

Query: 291 ILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFN 343
                 F      + +  + L     +L   +  +P    + +      M   
Sbjct: 314 SGPIIRFDMAGASAPRETRAL-----HLAAADWLVPAREGEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 51/279 (18%), Positives = 89/279 (31%), Gaps = 64/279 (22%)

Query: 663 IPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722
           +   +    ++   VLN+  + L  T+    PA+  + TL +  N L   +P        
Sbjct: 30  VVQKMRACLNNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLTS-LPALPPE--- 82

Query: 723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNK 782
           L  L++  NQ   + P        L +      +     S          L  + +  N+
Sbjct: 83  LRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLPALPSG---------LCKLWIFGNQ 132

Query: 783 FSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKI 842
            +  LP                    L+ L      L+       +      L       
Sbjct: 133 LT-SLP---------------VLPPGLQELSVSDNQLAS------LPALPSEL------- 163

Query: 843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMN 902
                 +    N     +P     LQ    L++S N L  S+P+L   L     L    N
Sbjct: 164 ----CKLWAYNNQLTS-LPMLPSGLQE---LSVSDNQLA-SLPTLPSELY---KLWAYNN 211

Query: 903 NLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTS-TQLQS 940
            L+ ++PA  +    L  L +S N L   +P   ++L+ 
Sbjct: 212 RLT-SLPALPSG---LKELIVSGNRL-TSLPVLPSELKE 245

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 24/107 (22%)

Query: 852 SRNNFEGPIPEEMGLLQSLCALNLSHNALT--------------------GSIPSLIGNL 891
           SR            L      LN+  + LT                     S+P+L   L
Sbjct: 24  SRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPEL 83

Query: 892 REIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQL 938
           R   +L++S N L+ ++P     L  LS+ +    HL        +L
Sbjct: 84  R---TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (297), Expect = 6e-28
 Identities = 91/521 (17%), Positives = 167/521 (32%), Gaps = 83/521 (15%)

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPD--FHQNLSLETLILSA 294
              T L +S   +   +   IL L  L  L +S+N +    L    F  N  LE L LS 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSH 78

Query: 295 TNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS----GPIP 350
                I      NLK+L            PI     ++SQL +L +S  H       PI 
Sbjct: 79  NKLVKISCHPTVNLKHLDLSFNAFDAL--PICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 351 SLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHL 410
            L++ + L  L             +      +L  V  ++      +  S+  +  ++  
Sbjct: 137 HLNISKVLLVL-GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 411 LLADNQFDGHVTEISNASSSL----------LDTLDLSDNNLEGPIPLSFFELKNLKILL 460
            +     D   +   +  + L          L+ ++ + N+      L       +    
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF--IRILQLVWHTTVWYFS 253

Query: 461 LSSNKFVGTIELDAIQ----RLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKL 516
           +S+ K  G ++          L+ L    +  +       S +Y     +   +      
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ-SYIYEIFSNMNIKNFTVSGT 312

Query: 517 SAIPNL--RKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSIS 574
             +  L   K +   HLD S+N ++  +      +       L L  N L  L +   ++
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLT--ELETLILQMNQLKELSKIAEMT 370

Query: 575 D-LTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKN 633
             + SL  LD+  N +                             G              
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKK-----------------------GDCSWT--------- 398

Query: 634 SLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATF 693
                         +LL L++S N L+  I  CL      ++ VL+L  N +  ++    
Sbjct: 399 -------------KSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSNKIK-SIPKQV 440

Query: 694 PANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
               +L+ L++  NQL+ +        + L+ + L  N +D
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (280), Expect = 7e-26
 Identities = 90/454 (19%), Positives = 166/454 (36%), Gaps = 33/454 (7%)

Query: 154 SGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLR 213
           +  + +L++LR L +    I    I   +       +L+ L LS   L      S     
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFN----QELEYLDLSHNKLVKI---SCHPTV 90

Query: 214 SLSVIRLDMNDLYS-PVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272
           +L  + L  N   + P+ +   + S L  L LS+  L  +    I  L   + L +    
Sbjct: 91  NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET 150

Query: 273 LLQGSLPDFHQNLSLETLIL---SATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSM 329
             +   P+  Q+ + E+L +   +   F  IL  S+K + NL          +      +
Sbjct: 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 330 SDLSQ-----------LVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTG----GISS 374
           S L++           L  ++ ++N F   I  L     + Y  +S     G        
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIR-ILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 375 IGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDT 434
                L  L    +  +  G            +       +          +  S  L  
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL-H 328

Query: 435 LDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVG-TIELDAIQRLRNLFRLDLSYNRLAV 493
           LD S+N L   +  +   L  L+ L+L  N+    +   +   ++++L +LD+S N ++ 
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 494 VAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDS 553
                   +   L +L+++S  L+         ++  LDL  N+I   IP  + K+   +
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLE--A 445

Query: 554 FNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSN 587
              LN++ N L S+        LTSL  + LH+N
Sbjct: 446 LQELNVASNQLKSVP-DGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  109 bits (275), Expect = 3e-25
 Identities = 76/466 (16%), Positives = 158/466 (33%), Gaps = 39/466 (8%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGM 139
              LN++ N    +E+ +  + +L+ L  L +S+      + I V      L  LDLS  
Sbjct: 23  TTILNISQN--YISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS-- 77

Query: 140 YFVRAPLKLENPNLSGL-LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSG 198
                     +  L  +       L+ L L      A  +  C+   ++  +L+ L LS 
Sbjct: 78  ----------HNKLVKISCHPTVNLKHLDLSFNAFDA--LPICKEFGNM-SQLKFLGLST 124

Query: 199 CFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKIL 258
             L       +++L    V+ +                 +  +  L            IL
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFIL 182

Query: 259 QLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYL 318
            +      +L  + +    + + ++     +++        +   ++ N++        +
Sbjct: 183 DVSVKTVANLELSNIK--CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 319 CNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWE 378
                        +S +         F     S    + L+   +  ++F     S  +E
Sbjct: 241 LQLVWHTTVWYFSISNVKLQ--GQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYE 297

Query: 379 QLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSL--LDTLD 436
              N+   + + +           ++    HL  ++N        +      L  L+TL 
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL---TDTVFENCGHLTELETLI 354

Query: 437 LSDNNLE--GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVV 494
           L  N L+    I     ++K+L+ L +S N      +       ++L  L++S N L   
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL--- 411

Query: 495 AGSSVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQIS 539
             +   C PP +  L L S K+ +IP  + K   L  L+++ NQ+ 
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  107 bits (268), Expect = 3e-24
 Identities = 82/522 (15%), Positives = 153/522 (29%), Gaps = 93/522 (17%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
              L++S N +          L  L+IL++S N+    +++   +  + L  LDLS+N+L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNKL 81

Query: 492 AVVAGSSVYCFPPL--LTTLSLASCKLSAIPN---LRKQTKLYHLDLSDNQISGEIPNWL 546
             ++        P   L  L L+     A+P        ++L  L LS   +       +
Sbjct: 82  VKIS------CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 547 WKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAA----- 601
                   N   +   L  +  +      L   +   LH      K      + +     
Sbjct: 136 -----AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 602 -----------YVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLL 650
                        +      +    +     +S     +      + +    +   T + 
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRR---NNLNGTVSATFPANCSLRTLDLNGN 707
              +S   L G +     + S + L  L++ +   +      S  +    ++   +   +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 708 QLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYN 767
               +     +  S    LD  NN   DT      + + L  LIL+ N            
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 768 VSWPMLQIIDLASNKFSGRLPQK---WLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYY 824
                LQ +D++ N  S    +    W  +L                     LN+S    
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSL-------------------LSLNMSS--- 408

Query: 825 QDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSI 884
                              NI T   F              L   +  L+L  N +  SI
Sbjct: 409 -------------------NILTDTIFRC------------LPPRIKVLDLHSNKIK-SI 436

Query: 885 PSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN 926
           P  +  L  ++ L+++ N L          L  L  + L  N
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (260), Expect = 3e-23
 Identities = 72/473 (15%), Positives = 160/473 (33%), Gaps = 60/473 (12%)

Query: 479 RNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDN 536
           +    L++S N ++ +  +S       L  L ++  ++  +     +   +L +LDLS N
Sbjct: 21  QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79

Query: 537 QISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPL 596
           ++     +        +  HL+LS N   +L       +++ L  L L +  ++      
Sbjct: 80  KLVKISCHPT-----VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 597 PPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSY 656
             +            +    +    +      S      T      I + +   V +L  
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 657 NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA------------TFPANCSLRTLDL 704
           + +  ++     +   S L  L       N T++                 + ++    +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 705 NGNQLEGMVPKSLANCS-----VLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF-F 758
           +  +L+G +     + S      L I  + ++ F        +  S +++     +    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 759 GNISCPRYNVSWPMLQIIDLASNKFSGRLPQ--KWLLNLEAMMVDEGRSQSELKHLQYRF 816
            ++ CP           +D ++N  +  + +    L  LE +++   + +  L  +    
Sbjct: 315 VHMLCPSKISP---FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMT 370

Query: 817 LNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM-GLLQSLCALNL 875
             +                             +D S+N+      +      +SL +LN+
Sbjct: 371 TQMKSL------------------------QQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 876 SHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
           S N LT +I   +     I+ LDL  N +  +IP Q+  L  L  LN++ N L
Sbjct: 407 SSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.4 bits (245), Expect = 2e-21
 Identities = 67/362 (18%), Positives = 127/362 (35%), Gaps = 25/362 (6%)

Query: 73  SSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNL-----SNAGFAGQIPIQVSG 127
            SS+  + +L    +   +            L +  T +L     +N  F   + + V  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 128 MTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSL 187
           +  L   ++  +          +      LQ   +L  L L+ +  +         L   
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAK--LQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246

Query: 188 VPKLQVLSLSGCFLSGP-----VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSL 242
              +   S+S   L G       D S ++L++LS+ ++  +    P       FSN+   
Sbjct: 247 TT-VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 243 YLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGI-- 300
             +  G          ++     LD S N L      +      LETLIL       +  
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 301 LPDSIKNLKNLSRVEFYLCNFNGPIPTSMSD-LSQLVYLDMSFNHFSGPIPSLHMFRNLA 359
           + +    +K+L +++    + +             L+ L+MS N  +       +   + 
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCLPPRIK 424

Query: 360 YLDLSYNIFTGGISSI--GWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQ 416
            LDL  N     I SI     +L  L  ++++ N L  S+P  +F+ L  +Q + L  N 
Sbjct: 425 VLDLHSN----KIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNP 479

Query: 417 FD 418
           +D
Sbjct: 480 WD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 69/395 (17%), Positives = 126/395 (31%), Gaps = 49/395 (12%)

Query: 581 VLDLHSNQIQGKIPP-LPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVI 639
           ++D   N +   +P  L      ++ S N  +     DI S   L      S N +  + 
Sbjct: 4   LVDRSKNGLI-HVPKDLSQKTTILNISQNYISELWTSDILSLSKLR-ILIISHNRIQYLD 61

Query: 640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNG-TVSATFPANCS 698
                    L  LDLS+N L  +     +N     L  L+L  N  +   +   F     
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKISCHPTVN-----LKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 699 LRTLDLNGNQLEGMVPKSLANCSVLE---------------------------ILDLGNN 731
           L+ L L+   LE      +A+ ++ +                           I+   N 
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176

Query: 732 QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPM---------LQIIDLASNK 782
           +F       VK  + L +  ++        S     ++            L  I+   N 
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 783 FSGRLPQKWLLNLEAMMVDEGRSQSELKH--LQYRFLNLSQAYYQDAITVTIKGLEMKLA 840
           F   L   W   +    +   + Q +L      Y   +L        ++      +  + 
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

Query: 841 KILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLS 900
           +I +     +F+ +            +     L+ S+N LT ++    G+L E+E+L L 
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 901 MNNLS--GTIPAQLASLNFLSVLNLSYNHLVGRIP 933
           MN L     I      +  L  L++S N +     
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  116 bits (292), Expect = 2e-27
 Identities = 87/450 (19%), Positives = 154/450 (34%), Gaps = 58/450 (12%)

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
            N  S   ++  +         QL TL +LD   + +    +    +   L  LI ++ N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT--DMTGIEKLTGLTKLICTSNN 75

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
            + +      NL  L+      C+ N      ++ L++L YL+   N  +  +       
Sbjct: 76  ITTLDLSQNTNLTYLA------CDSNKLTNLDVTPLTKLTYLNCDTNKLT-KLDVSQN-P 127

Query: 357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416
            L YL+ + N     ++ I       L  +D   N     +   +     +  L  + N+
Sbjct: 128 LLTYLNCARN----TLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 417 FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQ 476
                TE+  + + LL+ L+   NN+     L   +   L  L  SSNK     E+D + 
Sbjct: 182 I----TELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKL---TEID-VT 230

Query: 477 RLRNLFRLDLSYNRLAVVAGS------SVYC-----------FPPLLTTLSLASCKLSAI 519
            L  L   D S N L  +  S      +++C               L       C+    
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKE 290

Query: 520 PNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSL 579
            ++   T+LY LD     I+ E+             +L L++  L  L     +S  T L
Sbjct: 291 LDVTHNTQLYLLDCQAAGIT-ELDLSQNP----KLVYLYLNNTELTEL----DVSHNTKL 341

Query: 580 SVLDLHSNQIQGKIPPLPPNAA-YVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTG- 637
             L   +  IQ     +    A   ++     T ++P +  +  SL+I  S       G 
Sbjct: 342 KSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGN 400

Query: 638 --VIPESICNATNLLVLDLSYNYLSGMIPT 665
              I        +     +++  LS   P 
Sbjct: 401 PMNIEPGDGGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  114 bits (287), Expect = 6e-27
 Identities = 75/467 (16%), Positives = 144/467 (30%), Gaps = 74/467 (15%)

Query: 295 TNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHM 354
            +F+   PD   N  +                 S   L+ L  LD   +  +  +  +  
Sbjct: 9   QSFNDWFPDD--NFASEVAAA---FEMQATDTISEEQLATLTSLDCHNSSITD-MTGIEK 62

Query: 355 FRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLAD 414
              L  L  + N     I+++   Q  NL ++    N L  ++   +  L  + +L    
Sbjct: 63  LTGLTKLICTSN----NITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDT 115

Query: 415 NQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDA 474
           N+     T++  + + LL  L+ + N L     +       L  L    NK    I    
Sbjct: 116 NKL----TKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKK---ITKLD 165

Query: 475 IQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLS 534
           +     L  LD S+N++  +  S       LL  L+  +  ++ +  L +  +L  LD S
Sbjct: 166 VTPQTQLTTLDCSFNKITELDVSQ----NKLLNRLNCDTNNITKLD-LNQNIQLTFLDCS 220

Query: 535 DNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIP 594
            N+++ EI                              ++ LT L+  D   N +     
Sbjct: 221 SNKLT-EID-----------------------------VTPLTQLTYFDCSVNPLTELDV 250

Query: 595 PLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDL 654
                   +     +      +D+     L  F +     +       + + T L +LD 
Sbjct: 251 STLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKIK---ELDVTHNTQLYLLDC 304

Query: 655 SYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVP 714
               ++ +  +         L  L L    L   +  +      L++L      ++    
Sbjct: 305 QAAGITELDLSQNPK-----LVYLYLNNTELT-ELDVSHNTK--LKSLSCVNAHIQDF-- 354

Query: 715 KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNI 761
            S+     L        Q        + N S    +     + FGN 
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  111 bits (279), Expect = 8e-26
 Identities = 83/511 (16%), Positives = 153/511 (29%), Gaps = 83/511 (16%)

Query: 106 NLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRE 165
           N  +   +         I    +  L +LD                +++G ++ L  L +
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---------DMTG-IEKLTGLTK 68

Query: 166 LYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDL 225
           L     NI+   +       S    L  L+     L+   +  ++ L  L+ +  D N L
Sbjct: 69  LICTSNNITTLDL-------SQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKL 118

Query: 226 YSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL 285
            + +   ++    LT L  +   L       +     L  LD   N+ +  +  D     
Sbjct: 119 -TKLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI--TKLDVTPQT 170

Query: 286 SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHF 345
            L TL  S    + +                            +S    L  L+   N+ 
Sbjct: 171 QLTTLDCSFNKITEL---------------------------DVSQNKLLNRLNCDTNNI 203

Query: 346 SGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELP 405
           +     L+    L +LD S N     ++ I    L  L + D S N L   +  S     
Sbjct: 204 TK--LDLNQNIQLTFLDCSSN----KLTEIDVTPLTQLTYFDCSVNPL-TELDVSTL--S 254

Query: 406 MVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNK 465
            +  L            EI    ++ L             + ++      L +L   +  
Sbjct: 255 KLTTLHCIQTDL----LEIDLTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQAAG 308

Query: 466 FVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQ 525
                ELD + +   L  L L+   L  +  S        L +LS  +  +    ++ K 
Sbjct: 309 IT---ELD-LSQNPKLVYLYLNNTELTELDVSH----NTKLKSLSCVNAHIQDFSSVGKI 360

Query: 526 TKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLH 585
             L +   ++ Q              ++   + +S +LL     P +I       V D  
Sbjct: 361 PALNNNFEAEGQTITMPKE----TLTNNSLTIAVSPDLLDQFGNPMNIEP-GDGGVYDQA 415

Query: 586 SNQIQGKIPPLPPNAAYVDYSGNNFTSSIPV 616
           +N I  +       A    ++  N      V
Sbjct: 416 TNTITWENLSTDNPAVTYTFTSENGAIVGTV 446

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.4 bits (217), Expect = 5e-18
 Identities = 68/391 (17%), Positives = 123/391 (31%), Gaps = 52/391 (13%)

Query: 75  SLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTL 134
            L     L  L    N    T +   +  LT LT LN           + VS    L  L
Sbjct: 80  DLSQNTNLTYLACDSNKL--TNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYL 132

Query: 135 DLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVL 194
           + +          L   ++S    +  +L EL                 ++    +L  L
Sbjct: 133 NCARN-------TLTEIDVS----HNTQLTELDCHLNKKITKL-----DVTPQ-TQLTTL 175

Query: 195 SLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFP 254
             S   ++   +  +S  + L+ +  D N++       L     LT L  SS  L     
Sbjct: 176 DCSFNKIT---ELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT-EID 228

Query: 255 EKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRV 314
             +  L  L   D S N L   +  D      L TL    T+   I    + +   L   
Sbjct: 229 --VTPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLLEI---DLTHNTQLI-- 278

Query: 315 EFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISS 374
            F            ++  +QL  LD      +     L     L YL L+       ++ 
Sbjct: 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE--LDLSQNPKLVYLYLNNT----ELTE 332

Query: 375 IGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDT 434
           +       L  +   + ++      S+ ++P + +   A+ Q    +T      ++   T
Sbjct: 333 LDVSHNTKLKSLSCVNAHI-QDFS-SVGKIPALNNNFEAEGQT---ITMPKETLTNNSLT 387

Query: 435 LDLSDNNLEGPIPLSFFELKNLKILLLSSNK 465
           + +S + L+        E  +  +   ++N 
Sbjct: 388 IAVSPDLLDQFGNPMNIEPGDGGVYDQATNT 418

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.1 bits (216), Expect = 5e-18
 Identities = 76/500 (15%), Positives = 147/500 (29%), Gaps = 97/500 (19%)

Query: 478 LRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQ 537
             +             ++          LT+L   +  ++ +  + K T L  L  + N 
Sbjct: 20  FASEVAAAFEMQATDTISEEQ----LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN 75

Query: 538 ISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP 597
           I+    +    +      +L    N L +L     ++ LT L+ L+  +N++        
Sbjct: 76  ITTLDLSQNTNL-----TYLACDSNKLTNL----DVTPLTKLTYLNCDTNKLTKLDVSQN 126

Query: 598 PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN 657
           P   Y++ + N  T    +D+     L+         +T      +   T L  LD S+N
Sbjct: 127 PLLTYLNCARNTLTE---IDVSHNTQLTELDCHLNKKIT---KLDVTPQTQLTTLDCSFN 180

Query: 658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSL 717
            ++ +  +         L  LN   NN+          N  L  LD + N+L  +    +
Sbjct: 181 KITELDVSQNKL-----LNRLNCDTNNIT---KLDLNQNIQLTFLDCSSNKLTEI---DV 229

Query: 718 ANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIID 777
              + L   D   N   +     V   S+L  L     +                L  ID
Sbjct: 230 TPLTQLTYFDCSVNPLTE---LDVSTLSKLTTLHCIQTD----------------LLEID 270

Query: 778 LASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEM 837
           L  N       Q      E     +    +    L    L+                   
Sbjct: 271 LTHN------TQLIYFQAEGCRKIKELDVTHNTQLYL--LDCQA---------------- 306

Query: 838 KLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESL 897
                    T +D S+                L  L L++  LT  +   + +  +++SL
Sbjct: 307 ------AGITELDLSQ-------------NPKLVYLYLNNTELT-ELD--VSHNTKLKSL 344

Query: 898 DLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPL 957
                ++     + +  +  L+    +    +     +    S            +G P+
Sbjct: 345 SCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402

Query: 958 NVCPTNSSKALPSAPASTDE 977
           N+ P +      +    T E
Sbjct: 403 NIEPGDGGVYDQATNTITWE 422

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 43/252 (17%), Positives = 81/252 (32%), Gaps = 45/252 (17%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           LD S   ++        +  L  L   + + N    TE+   +  L+ LTTL+       
Sbjct: 217 LDCSSNKLT-----EIDVTPLTQLTYFDCSVNPL--TELD--VSTLSKLTTLHCIQTDLL 267

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL-LQNLAELRELYLDGVNISAPG 177
               I ++  T+L+     G              +  L + +  +L  L      I+   
Sbjct: 268 E---IDLTHNTQLIYFQAEG-----------CRKIKELDVTHNTQLYLLDCQAAGITE-- 311

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFS 237
           ++    LS   PKL  L L+   L+   +  +S+   L  +      +       +    
Sbjct: 312 LD----LSQN-PKLVYLYLNNTELT---ELDVSHNTKLKSLSCVNAHIQD-FSS-VGKIP 361

Query: 238 NLTSLYLSSCGLHGAFPEKILQLPTL------ETLDLSYNELLQGSLPDFHQNLSLETLI 291
            L + + +        P++ L   +L      + LD   N +     P         T  
Sbjct: 362 ALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNT 418

Query: 292 LSATNFSGILPD 303
           ++  N S   P 
Sbjct: 419 ITWENLSTDNPA 430

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  115 bits (291), Expect = 2e-27
 Identities = 84/407 (20%), Positives = 161/407 (39%), Gaps = 44/407 (10%)

Query: 349 IPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMV 407
           +P L    ++ Y+DLS N     ++   + +L +L  + +     G  I  + F  L  +
Sbjct: 25  VPEL--PAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 408 QHLLLADNQFDGHVTEISN---ASSSLLDTLDLSDNNL-EGPIPLSFFE-LKNLKILLLS 462
             L L  NQF     ++        + L+ L L+  NL    +  +FF+ L +L++L+L 
Sbjct: 82  IILKLDYNQF----LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 463 SNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL-LTTLSLASCKLSAIP- 520
            N             +R    LDL++N++  +    +  F     T L L+S  L  +  
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 521 ---------NLRKQTKLYHLDLSDNQISGEIPNWLWK-IGKDSFNHLNLSHNLLVSLEQP 570
                    N  K T +  LDLS N     +    +  I       L LS++  +     
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 571 YS-ISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLS--IF 627
           ++   D  + +   L ++ ++             D S +   +   +    F   +    
Sbjct: 258 HTNFKDPDNFTFKGLEASGVK-----------TCDLSKSKIFA---LLKSVFSHFTDLEQ 303

Query: 628 FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNG 687
            + ++N +  +   +    T+LL L+LS N+L  +      N+   +L VL+L  N++  
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD--KLEVLDLSYNHIRA 361

Query: 688 TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
               +F    +L+ L L+ NQL+ +        + L+ + L  N +D
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (270), Expect = 8e-25
 Identities = 83/385 (21%), Positives = 137/385 (35%), Gaps = 68/385 (17%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
           ++ +DLS N++      SF  L++L+ L +        I  +  + L +L  L L YN+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 492 AVVAGSSVYCFPPL--LTTLSLASCKL--SAIPN--LRKQTKLYHLDLSDNQISGEIP-- 543
             +   +   F  L  L  L+L  C L  + +     +  T L  L L DN I    P  
Sbjct: 92  LQLETGA---FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 544 ---------------NWLWKIGKDSFN--------HLNLSHNLLVSLEQPYSIS------ 574
                          N +  I ++            L LS   L  + + +         
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 575 -DLTSLSVLDLHSNQIQG-------------KIPPLPPNAAYVDYSGNNFTSSIPVDIGS 620
              TS++ LDL  N  +              KI  L  + +Y   S    T+    D  +
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 621 FMSLSI----FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLG 676
           F  L          SK+ +  ++     + T+L  L L+ N ++ +       +  + L 
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL--THLL 326

Query: 677 VLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF--- 733
            LNL +N L    S  F     L  LDL+ N +  +  +S      L+ L L  NQ    
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386

Query: 734 -DDTFPCWVKNASRLHVLILRSNNF 757
            D  F       + L  + L +N +
Sbjct: 387 PDGIF----DRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 89/439 (20%), Positives = 156/439 (35%), Gaps = 76/439 (17%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           +DLS  SI+    N +S   L+ LQ L +           +    L++L  L L    F 
Sbjct: 35  VDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 119 GQIPIQV-SGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
            Q+     +G+  L  L L+      A L           + L  L  L L   N     
Sbjct: 93  -QLETGAFNGLANLEVLTLTQCNLDGAVLS------GNFFKPLTSLEMLVLRD-N----- 139

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFS 237
                        ++ +  +  F          N+R   V+ L  N + S + E   D  
Sbjct: 140 ------------NIKKIQPASFF---------LNMRRFHVLDLTFNKVKS-ICE--EDLL 175

Query: 238 NLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNF 297
           N    +             +L+L ++   D++   L      +  +N S+ TL LS   F
Sbjct: 176 NFQGKHF-----------TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 298 SGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRN 357
              +     +    ++++  + + +  + +S        + D     F G   S      
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSS---FGHTNFKDPDNFTFKGLEAS-----G 276

Query: 358 LAYLDLSYNIFTGGISSIG---WEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLA 413
           +   DLS +     I ++    +    +L  + L+ N +   I  + F  L  +  L L+
Sbjct: 277 VKTCDLSKS----KIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLS 331

Query: 414 DNQFDGHVTEISNAS-SSL--LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTI 470
            N        I +    +L  L+ LDLS N++      SF  L NLK L L +N+   ++
Sbjct: 332 QNFL----GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SV 386

Query: 471 ELDAIQRLRNLFRLDLSYN 489
                 RL +L ++ L  N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.2 bits (185), Expect = 3e-14
 Identities = 58/319 (18%), Positives = 111/319 (34%), Gaps = 46/319 (14%)

Query: 631 SKNSLTGV--IPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT 688
               L  V  +P       ++  +DLS N ++ +  T    +    L  L + +      
Sbjct: 18  INRGLHQVPELP------AHVNYVDLSLNSIAELNETSFSRLQ--DLQFLKVEQQTPGLV 69

Query: 689 VSA-TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF--PCWVKNAS 745
           +   TF    SL  L L+ NQ   +   +    + LE+L L     D       + K  +
Sbjct: 70  IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129

Query: 746 RLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRS 805
            L +L+LR NN    I    + ++     ++DL  NK    + ++ LLN +         
Sbjct: 130 SLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQG-------- 179

Query: 806 QSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMG 865
                   +  L LS    QD     +   +          T++D S N F+  + +   
Sbjct: 180 ------KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 866 LLQSL-----CALNLSHNALTGSIPSLIGNLRE----------IESLDLSMNNLSGTIPA 910
              +        L+ S+N  +    +   +             +++ DLS + +   +  
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLK 292

Query: 911 QL-ASLNFLSVLNLSYNHL 928
            + +    L  L L+ N +
Sbjct: 293 SVFSHFTDLEQLTLAQNEI 311

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 37/282 (13%), Positives = 82/282 (29%), Gaps = 38/282 (13%)

Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWV-KNASRLHVLILRSNN 756
            +  +DL+ N +  +   S +    L+ L +              +  S L +L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 757 F-------FGNISCPRYNVSWPMLQIIDLASNKF-SGRLPQKWLLNLEAM---------- 798
           F       F  ++          L+++ L         L   +   L ++          
Sbjct: 91  FLQLETGAFNGLA---------NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 799 -MVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF--TSIDFSRNN 855
             +        ++      L+L+    +      +   + K   +L +   T  D +   
Sbjct: 142 KKIQPASFFLNMRRFHV--LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 856 FEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL 915
                        S+  L+LS N    S+     +      +   + + S  + +     
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 916 NFLSVLNLSYNHLVGRIPT-----STQLQSFLATSFEGNDRL 952
           NF    N ++  L            +++ + L + F     L
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (278), Expect = 1e-26
 Identities = 77/314 (24%), Positives = 130/314 (41%), Gaps = 31/314 (9%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
           L  +  SD  LE  +P       +  +L L +NK    I+    + L+NL  L L  N++
Sbjct: 33  LRVVQCSDLGLEK-VPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 492 AVVAGSSVYCFPPL--LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKI 549
           + ++  +   F PL  L  L L+  +L  +P    +T L  L + +N+I+ ++   ++  
Sbjct: 89  SKISPGA---FAPLVKLERLYLSKNQLKELPEKMPKT-LQELRVHENEIT-KVRKSVFN- 142

Query: 550 GKDSFNHLNLSHNLLVSLE-QPYSISDLTSLSVLDLHSNQIQGKIPP-LPPNAAYVDYSG 607
           G +    + L  N L S   +  +   +  LS + +    I   IP  LPP+   +   G
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDG 201

Query: 608 NNFTSSIPVDIGSFMSLS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPT 665
           N  T    VD  S   L+       S NS++ V   S+ N  +L  L L+ N L   +P 
Sbjct: 202 NKITK---VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

Query: 666 CLINMSDSQLGVLNLRRNNLNGTVSATFPANC------SLRTLDLNGNQLE--GMVPKSL 717
            L +     + V+ L  NN++   S  F          S   + L  N ++   + P + 
Sbjct: 258 GLADHK--YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315

Query: 718 ANCSVLEILDLGNN 731
               V   + LGN 
Sbjct: 316 RCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (259), Expect = 5e-24
 Identities = 72/345 (20%), Positives = 119/345 (34%), Gaps = 66/345 (19%)

Query: 382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNAS-SSL--LDTLDLS 438
           +L  V  S   L   +P+ L   P    L L +N+     TEI +    +L  L TL L 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILI 84

Query: 439 DNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQR--LRNLFRLDLSYNRLAVVAG 496
           +N +    P +F  L  L+ L LS N+      L  +     + L  L +  N +  V  
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQ------LKELPEKMPKTLQELRVHENEITKV-- 136

Query: 497 SSVYCFPPL--LTTLSLASCKL--SAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIG 550
                F  L  +  + L +  L  S I N   +   KL ++ ++D  I+  IP  L    
Sbjct: 137 -RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--- 191

Query: 551 KDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNF 610
             S   L+L  N +  ++   S+  L +L+ L L  N I   +                 
Sbjct: 192 -PSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNSIS-AVDN--------------- 233

Query: 611 TSSIPVDIGSFMSLS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLS----GMIP 664
                   GS  +         + N L   +P  + +   + V+ L  N +S        
Sbjct: 234 --------GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 665 TCLINMSDSQLGVLNLRRNNLNGTV--SATFPANCSLRTLDLNGN 707
               N   +    ++L  N +       +TF        + L   
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.8 bits (244), Expect = 4e-22
 Identities = 58/314 (18%), Positives = 111/314 (35%), Gaps = 47/314 (14%)

Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
           P   +L L    ++   D    NL++L  + L  N +    P   A    L  LYLS   
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPD--FHQNLSLETLILSATNFSGILPDSIK 306
           L    PEK+    TL+ L +  NE+    +    F+    +  + L              
Sbjct: 112 LK-ELPEKM--PKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELG------------T 154

Query: 307 NLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYN 366
           N    S +E            +   + +L Y+ ++  + +  IP   +  +L  L L  N
Sbjct: 155 NPLKSSGIE----------NGAFQGMKKLSYIRIADTNITT-IPQ-GLPPSLTELHLDGN 202

Query: 367 IFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEIS 425
             T  + +   + L NL  + LS N++  ++        P ++ L L +N+      ++ 
Sbjct: 203 KIT-KVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKL----VKVP 256

Query: 426 NASSSL--LDTLDLSDNNLEG------PIPLSFFELKNLKILLLSSNKF-VGTIELDAIQ 476
              +    +  + L +NN+          P    +  +   + L SN      I+    +
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 477 RLRNLFRLDLSYNR 490
            +     + L   +
Sbjct: 317 CVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 57/304 (18%), Positives = 98/304 (32%), Gaps = 47/304 (15%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGM 139
              L+L  N    TEI  G   NL NL TL L N   + +I     + + +L  L LS  
Sbjct: 54  TALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 140 YFVRAP---------LKLENPNLS----GLLQNLAELRELYLDGVNISAPGIEWCQALSS 186
                P         L++    ++     +   L ++  + L    + + GIE   A   
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQG 169

Query: 187 LVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSS 246
           +  KL  + ++   ++        +L  L    LD N +       L   +NL  L LS 
Sbjct: 170 M-KKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 247 CGLHGAFPEKILQLPTLETLDLSYNELLQGSLPD-FHQNLSLETLILSATNFSGILPDSI 305
             +       +   P L  L L+ N+L+   +P     +  ++ + L   N S I  +  
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 306 KNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS-GPIPS--LHMFRNLAYLD 362
                               P   +  +    + +  N      I           A + 
Sbjct: 284 CP------------------PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

Query: 363 LSYN 366
           L   
Sbjct: 326 LGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.0 bits (203), Expect = 8e-17
 Identities = 57/326 (17%), Positives = 102/326 (31%), Gaps = 86/326 (26%)

Query: 603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM 662
           V  S       +P D+    +L        N +T +      N  NL  L L  N +S +
Sbjct: 36  VQCSDLGLEK-VPKDLPPDTAL---LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 663 IPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722
            P     +   +L  L L +N L            +L+ L ++ N++  +        + 
Sbjct: 92  SPGAFAPLV--KLERLYLSKNQLKELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQ 146

Query: 723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNK 782
           + +++LG N               L    + +  F G             L  I +A   
Sbjct: 147 MIVVELGTNP--------------LKSSGIENGAFQGMKK----------LSYIRIADTN 182

Query: 783 FSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKI 842
            +  +PQ    +L                     L+L                       
Sbjct: 183 IT-TIPQGLPPSLT-------------------ELHLDG--------------------- 201

Query: 843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMN 902
            N  T +     + +G        L +L  L LS N+++      + N   +  L L+ N
Sbjct: 202 -NKITKV--DAASLKG--------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 903 NLSGTIPAQLASLNFLSVLNLSYNHL 928
            L   +P  LA   ++ V+ L  N++
Sbjct: 251 KLV-KVPGGLADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 16/118 (13%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSN---- 114
           L LS  SISA +DN S L +  +L+ L+L  N     ++P GL +   +  + L N    
Sbjct: 221 LGLSFNSISA-VDNGS-LANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNIS 276

Query: 115 --AGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDG 170
                    P   +       + L         ++          + +     + L  
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ------PSTFRCVYVRAAVQLGN 328

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (273), Expect = 4e-26
 Identities = 56/240 (23%), Positives = 92/240 (38%), Gaps = 19/240 (7%)

Query: 333 SQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYN-IFTGGISSIGWEQLLNLFHVDLSH 390
           S    L++  N     P         L  L LS N +   G  S       +L ++DLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 391 NNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASS----SLLDTLDLSDNNLEGPI 446
           N +  ++  +   L  ++HL    +     + ++S  S       L  LD+S  +     
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSN----LKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 447 PLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL- 505
              F  L +L++L ++ N F      D    LRNL  LDLS  +L  ++ ++   F  L 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA---FNSLS 199

Query: 506 -LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHN 562
            L  L+++     ++     +    L  LD S N I         +    S   LNL+ N
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.2 bits (245), Expect = 2e-22
 Identities = 62/279 (22%), Positives = 96/279 (34%), Gaps = 53/279 (18%)

Query: 236 FSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPD--FHQNLSLETLILS 293
            S+ T L L S  L         +L  L  L LS N L              SL+ L LS
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLH 353
                                          + ++   L QL +LD   ++    +    
Sbjct: 87  FNGVIT-------------------------MSSNFLGLEQLEHLDFQHSNLKQ-MSEFS 120

Query: 354 MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLL 412
           +F +L                       NL ++D+SH +        +F  L  ++ L +
Sbjct: 121 VFLSLR----------------------NLIYLDISHTHT-RVAFNGIFNGLSSLEVLKM 157

Query: 413 ADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIEL 472
           A N F  +           L  LDLS   LE   P +F  L +L++L +S N F  +++ 
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDT 216

Query: 473 DAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSL 511
              + L +L  LD S N +       +  FP  L  L+L
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 56/241 (23%), Positives = 87/241 (36%), Gaps = 25/241 (10%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSN--AGFAGQIPIQVSGMTRLVTLDLSG 138
              L L  N      +P G    LT LT L+LS+    F G       G T L  LDLS 
Sbjct: 30  ATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS- 86

Query: 139 MYFVRAPLKLENP--NLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSL 196
                      N    +S     L +L  L     N+    +       SL   L  L +
Sbjct: 87  ----------FNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSL-RNLIYLDI 133

Query: 197 SGCFLSGPVDPSLSNLRSLSVIRLDMN-DLYSPVPEFLADFSNLTSLYLSSCGLHGAFPE 255
           S        +   + L SL V+++  N    + +P+   +  NLT L LS C L      
Sbjct: 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 192

Query: 256 KILQ-LPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNL-KNLSR 313
                L +L+ L++S+N         +    SL+ L  S  +        +++   +L+ 
Sbjct: 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252

Query: 314 V 314
           +
Sbjct: 253 L 253

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 6e-16
 Identities = 50/216 (23%), Positives = 82/216 (37%), Gaps = 17/216 (7%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           L LS   +S     S S F    L+ L+L+FN      + S    L  L  L+  ++   
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 119 GQIPIQV-SGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPG 177
                 V   +  L+ LD+S  +   A         +G+   L+ L  L + G N     
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAF--------NGIFNGLSSLEVLKMAG-NSFQEN 165

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFS 237
                  + L   L  L LS C L      + ++L SL V+ +  N+ +S         +
Sbjct: 166 FLP-DIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223

Query: 238 NLTSLYLSSCGLHGAFPEKILQ--LPTLETLDLSYN 271
           +L  L  S   +     ++ LQ    +L  L+L+ N
Sbjct: 224 SLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 45/233 (19%), Positives = 72/233 (30%), Gaps = 56/233 (24%)

Query: 556 HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIP 615
            L L  N L SL        LT L+ L L SN +                      S   
Sbjct: 32  RLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGL----------------------SFKG 68

Query: 616 VDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQL 675
               S                          T+L  LDLS+N +   + +  + +   QL
Sbjct: 69  CCSQSDFGT----------------------TSLKYLDLSFNGVI-TMSSNFLGLE--QL 103

Query: 676 GVLNLRRNNLNGTVSA-TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
             L+ + +NL        F +  +L  LD++               S LE+L +  N F 
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 735 DTFPCWV-KNASRLHVLILRSNNFFGNISCPRYNVSWPM--LQIIDLASNKFS 784
           + F   +      L  L L        +          +  LQ+++++ N F 
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQC----QLEQLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 45/255 (17%), Positives = 77/255 (30%), Gaps = 59/255 (23%)

Query: 678 LNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ--FDD 735
           +      L  +V    P++     L+L  N+L+ +        + L  L L +N   F  
Sbjct: 12  IRCNSKGLT-SVPTGIPSS--ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 736 TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL 795
                    + L  L L  N     I+     +    L+ +D   +           L+L
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGV---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 796 EAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNN 855
             +                 +L++S                                   
Sbjct: 126 RNL----------------IYLDISH----------------------THTRVA--FNGI 145

Query: 856 FEGPIPEEMGLLQSLCALNLSHNALTGSIPS-LIGNLREIESLDLSMNNLSGTIPAQ-LA 913
           F G        L SL  L ++ N+   +    +   LR +  LDLS   L   +      
Sbjct: 146 FNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 196

Query: 914 SLNFLSVLNLSYNHL 928
           SL+ L VLN+S+N+ 
Sbjct: 197 SLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 55/244 (22%), Positives = 96/244 (39%), Gaps = 27/244 (11%)

Query: 697 CSLRTLDLNGNQLEGMVPKSL-ANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN 755
           CS   +  N   L   VP  + ++      L+L +N+            ++L  L L SN
Sbjct: 7   CSGTEIRCNSKGLTS-VPTGIPSS---ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN 62

Query: 756 NFFGNISCPRYNVSWPMLQIIDLASNK-------FSGRLPQKWLLNLEA---MMVDEGRS 805
                  C + +     L+ +DL+ N        F G L Q   L+ +      + E   
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSV 121

Query: 806 QSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM- 864
              L++L Y  L++S         V   G+   L+ +      +  + N+F+     ++ 
Sbjct: 122 FLSLRNLIY--LDIS----HTHTRVAFNGIFNGLSSL----EVLKMAGNSFQENFLPDIF 171

Query: 865 GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLS 924
             L++L  L+LS   L    P+   +L  ++ L++S NN           LN L VL+ S
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

Query: 925 YNHL 928
            NH+
Sbjct: 232 LNHI 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (273), Expect = 3e-25
 Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 23/223 (10%)

Query: 385 HVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEIS-NASSSL--LDTLDLSDN 440
           +++L  NN+   I    F  L  ++ L L  N     + +I   A + L  L+TL+L DN
Sbjct: 79  YLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS----IRQIEVGAFNGLASLNTLELFDN 133

Query: 441 NLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLS-YNRLAVVAGSSV 499
            L      +F  L  L+ L L +N    +I   A  R+ +L RLDL    +L  ++  + 
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGA- 191

Query: 500 YCFPPL--LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHL 557
             F  L  L  L+L  C +  +PNL     L  L++S N      P      G  S   L
Sbjct: 192 --FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFH--GLSSLKKL 247

Query: 558 NLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNA 600
            + ++ +  +E   +   L SL  L+L  N +      LP + 
Sbjct: 248 WVMNSQVSLIE-RNAFDGLASLVELNLAHNNLSS----LPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (252), Expect = 2e-22
 Identities = 62/311 (19%), Positives = 101/311 (32%), Gaps = 65/311 (20%)

Query: 429 SSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSY 488
           S+    +  +   L   +P       N + L L  N     I+ D  + L +L  L L  
Sbjct: 53  SNQFSKVVCTRRGLSE-VPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108

Query: 489 NRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPN 544
           N +  +    V  F  L  L TL L    L+ IP+      +KL  L L +N I   IP+
Sbjct: 109 NSIRQI---EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS 164

Query: 545 WLWKIGKDSFNHLNLSH-NLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYV 603
           + +     S   L+L     L  +    +   L +L  L+L    I+             
Sbjct: 165 YAFN-RVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCNIK------------- 209

Query: 604 DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMI 663
                        D+ +   L                        L  L++S N+   + 
Sbjct: 210 -------------DMPNLTPL----------------------VGLEELEMSGNHFPEIR 234

Query: 664 PTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVL 723
           P     +S   L  L +  + ++      F    SL  L+L  N L  +          L
Sbjct: 235 PGSFHGLS--SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292

Query: 724 EILDLGNNQFD 734
             L L +N ++
Sbjct: 293 VELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 1e-17
 Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 29/244 (11%)

Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
              + L+L    +      +  +L  L V++L  N +           ++L +L L    
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 249 LH----GAFPEKILQLPTLETLDLSYNELLQGSLPD--FHQNLSLETLILSATN-FSGIL 301
           L     GAF      L  L  L L  N +   S+P   F++  SL  L L        I 
Sbjct: 135 LTVIPSGAF----EYLSKLRELWLRNNPI--ESIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 302 PDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLA-- 359
             + + L NL  +   +CN    +P  ++ L  L  L+MS NHF   I     F  L+  
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPE-IRP-GSFHGLSSL 244

Query: 360 -YLDLSYNIFTGGISSIGW---EQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLAD 414
             L +  +     +S I     + L +L  ++L+HNNL  S+P  LF  L  +  L L  
Sbjct: 245 KKLWVMNS----QVSLIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHH 299

Query: 415 NQFD 418
           N ++
Sbjct: 300 NPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 55/245 (22%), Positives = 90/245 (36%), Gaps = 32/245 (13%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGM 139
            + LNL  N  N   I +    +L +L  L L       QI +   +G+  L TL+L   
Sbjct: 77  TRYLNLMEN--NIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD- 132

Query: 140 YFVRAPLKLENPNLS----GLLQNLAELRELYLDGVNISA--PGIEWCQALSSLVPKLQV 193
                     N  L+    G  + L++LREL+L    I +         A + + P L  
Sbjct: 133 ----------N-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSY-----AFNRV-PSLMR 175

Query: 194 LSLSGC-FLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGA 252
           L L     L    + +   L +L  + L M ++   +P        L  L +S       
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNL-TPLVGLEELEMSGNHFPEI 233

Query: 253 FPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLS 312
            P     L +L+ L +  +++       F    SL  L L+  N S +  D    L+ L 
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

Query: 313 RVEFY 317
            +  +
Sbjct: 294 ELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 4e-13
 Identities = 55/298 (18%), Positives = 88/298 (29%), Gaps = 81/298 (27%)

Query: 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS 690
           ++  L+  +P+ I   +N   L+L  N +  +      ++    L VL L RN++     
Sbjct: 62  TRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLH--HLEVLQLGRNSIRQIEV 116

Query: 691 ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVL 750
             F    SL TL+L  N L  +   +    S L  L L NN  +            L  L
Sbjct: 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELK 810
            L                     ++  ++   F G                       L 
Sbjct: 177 DLGELK-----------------KLEYISEGAFEG-----------------------LF 196

Query: 811 HLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL 870
           +L+Y  LNL                             +     N           L  L
Sbjct: 197 NLKY--LNLGM----------------------CNIKDMP----NLTP--------LVGL 220

Query: 871 CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
             L +S N      P     L  ++ L +  + +S         L  L  LNL++N+L
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 58/296 (19%), Positives = 99/296 (33%), Gaps = 67/296 (22%)

Query: 648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGN 707
               +  +   LS  +P  +     S    LNL  NN+    + TF     L  L L  N
Sbjct: 55  QFSKVVCTRRGLSE-VPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 708 QLEGMVPKSLANCSVLEILDLGNNQF----DDTFPCWVKNASRLHVLILRSNNF------ 757
            +  +   +    + L  L+L +N         F    +  S+L  L LR+N        
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF----EYLSKLRELWLRNNPIESIPSY 165

Query: 758 -FGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRF 816
            F  +         P L  +DL   K    + +     L  +                ++
Sbjct: 166 AFNRV---------PSLMRLDLGELKKLEYISEGAFEGLFNL----------------KY 200

Query: 817 LNLSQAYYQDAITVTIKGLEMKLAKI-----LNIFTSIDFSRNNFEGPIPEEMGLLQSLC 871
           LNL                   +  +     L     ++ S N+F    P     L SL 
Sbjct: 201 LNLG---------------MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 872 ALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQ-LASLNFLSVLNLSYN 926
            L + ++ ++    +    L  +  L+L+ NNLS ++P      L +L  L+L +N
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.2 bits (159), Expect = 5e-11
 Identities = 59/312 (18%), Positives = 97/312 (31%), Gaps = 68/312 (21%)

Query: 598 PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN 657
              + V  +    +  +P  I    +        +N++  +  ++  +  +L VL L  N
Sbjct: 54  NQFSKVVCTRRGLSE-VPQGI--PSNTRYLN-LMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSL 717
            +  +       ++   L  L L  N L    S  F     LR L L  N +E +   + 
Sbjct: 110 SIRQIEVGAFNGLA--SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 718 ANCSVLEILDLGN-NQF----DDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPM 772
                L  LDLG   +     +  F    +    L  L L   N    I           
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAF----EGLFNLKYLNLGMCN----IKDMPNLTPLVG 219

Query: 773 LQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTI 832
           L+ ++++ N F   +       L                L+   L +             
Sbjct: 220 LEELEMSGNHFP-EIRPGSFHGL--------------SSLKK--LWVMN----------- 251

Query: 833 KGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLR 892
                +++ I          RN F+G        L SL  LNL+HN L+     L   LR
Sbjct: 252 ----SQVSLI---------ERNAFDG--------LASLVELNLAHNNLSSLPHDLFTPLR 290

Query: 893 EIESLDLSMNNL 904
            +  L L  N  
Sbjct: 291 YLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNN 903
           N F+ +  +R      +P+  G+  +   LNL  N +         +L  +E L L  N+
Sbjct: 54  NQFSKVVCTRRGLSE-VPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 904 LSGTIPAQ-LASLNFLSVLNLSYNHL 928
           +   I       L  L+ L L  N L
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWL 135

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  104 bits (261), Expect = 3e-24
 Identities = 59/316 (18%), Positives = 102/316 (32%), Gaps = 59/316 (18%)

Query: 434 TLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAV 493
            LDL +N++       F  L++L  L+L +NK    I   A   LR L +L +S N L  
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVE 116

Query: 494 VAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGK 551
           +  +     P  L  L +   ++  +P         +  +++  N +             
Sbjct: 117 IPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS------GFEP 166

Query: 552 DSFNHLNL-----SHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS 606
            +F+ L L     S   L  + +        +L+ L L  N+IQ  I             
Sbjct: 167 GAFDGLKLNYLRISEAKLTGIPK----DLPETLNELHLDHNKIQ-AIEL----------- 210

Query: 607 GNNFTSSIPVDIGSFMSLS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIP 664
                          +  S         N +  +   S+     L  L L  N LS  +P
Sbjct: 211 ------------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 665 TCLINMSDSQLGVLNLRRNNLNGTVSATFP------ANCSLRTLDLNGNQLE--GMVPKS 716
             L ++    L V+ L  NN+       F              + L  N +    + P +
Sbjct: 258 AGLPDLK--LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 717 LANCSVLEILDLGNNQ 732
               +    +  GN +
Sbjct: 316 FRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (255), Expect = 2e-23
 Identities = 65/292 (22%), Positives = 98/292 (33%), Gaps = 36/292 (12%)

Query: 506 LTTLSLASCKLSAIP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNH------LN 558
           L  +  +   L A+P  +   T    LDL +N IS        ++ KD F        L 
Sbjct: 35  LRVVQCSDLGLKAVPKEISPDTT--LLDLQNNDIS--------ELRKDDFKGLQHLYALV 84

Query: 559 LSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP-LPPNAAYVDYSGNNFTSSIPVD 617
           L +N +  +    + S L  L  L +  N +  +IPP LP +   +    N       V 
Sbjct: 85  LVNNKISKIH-EKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRK---VP 139

Query: 618 IGSFMSLS--IFFSFSKNSLTGV-IPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQ 674
            G F  L          N L          +   L  L +S   L+G+            
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP-----ET 194

Query: 675 LGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
           L  L+L  N +             L  L L  NQ+  +   SL+    L  L L NN+  
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL- 253

Query: 735 DTFPCWVKNASRLHVLILRSNNF----FGNISCPRYNVSWPMLQIIDLASNK 782
              P  + +   L V+ L +NN       +     + V       I L +N 
Sbjct: 254 SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (253), Expect = 2e-23
 Identities = 71/357 (19%), Positives = 120/357 (33%), Gaps = 65/357 (18%)

Query: 238 NLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNF 297
           +L  +  S  GL  A P++I   P    LDL  N++ +    DF     L  L+L     
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 298 SGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSG-PIPSLHMFR 356
           S I   +   L+ L ++     +    IP ++   S LV L +  N     P       R
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416
           N+  +++  N         G    L L ++ +S   L   IP+ L               
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGIPKDLP-------------- 192

Query: 417 FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQ 476
                          L+ L L  N ++            L  L L  N+ +  IE  ++ 
Sbjct: 193 -------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLS 238

Query: 477 RLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDN 536
            L  L  L L  N+L+ V        P  L  L                  L  + L  N
Sbjct: 239 FLPTLRELHLDNNKLSRV--------PAGLPDL----------------KLLQVVYLHTN 274

Query: 537 QIS----GEIPNWLWKIGKDSFNHLNLSHNLLVSLE-QPYSISDLTSLSVLDLHSNQ 588
            I+     +     + + +  +N ++L +N +   E QP +   +T    +   + +
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 51/316 (16%), Positives = 99/316 (31%), Gaps = 52/316 (16%)

Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
           P   +L L    +S         L+ L  + L  N +     +  +    L  LY+S   
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNL 308
           L    P  +    +L  L +  N +                          +       L
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRI------------------------RKVPKGVFSGL 146

Query: 309 KNLSRVEFYLCN---FNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSY 365
           +N++ +   +      N        D  +L YL +S    +G IP   +   L  L L +
Sbjct: 147 RNMNCI--EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK-DLPETLNELHLDH 202

Query: 366 NIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEI 424
           N     I      +   L+ + L HN +   I       LP ++ L L +N+     + +
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKL----SRV 256

Query: 425 SNASSSL--LDTLDLSDNNLEGPIPLSFF-------ELKNLKILLLSSNKF-VGTIELDA 474
                 L  L  + L  NN+   + ++ F       +      + L +N      ++   
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

Query: 475 IQRLRNLFRLDLSYNR 490
            + + +   +     +
Sbjct: 316 FRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 57/308 (18%), Positives = 98/308 (31%), Gaps = 56/308 (18%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGM 139
              L+L  N    +E+       L +L  L L N   + +I  +  S + +L  L +S  
Sbjct: 56  TTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112

Query: 140 YFVRAP---------LKLENPNLS----GLLQNLAELRELYLDGVNISAPGIEWCQALSS 186
           + V  P         L++ +  +     G+   L  +  + + G  +   G E   A   
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE-PGAFDG 171

Query: 187 LVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSS 246
           L  KL  L +S   L+G        L  L    LD N + +   E L  +S L  L L  
Sbjct: 172 L--KLNYLRISEAKLTGIPKDLPETLNEL---HLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 247 CGLH----GAFPEKILQLPTLETLDLSYNELLQGSLPD-FHQNLSLETLILSATNFSGIL 301
             +     G+       LPTL  L L  N+L    +P        L+ + L   N + + 
Sbjct: 227 NQIRMIENGSL----SFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 302 PDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR---NL 358
            +    +    +                   +    + +  N           FR   + 
Sbjct: 281 VNDFCPVGFGVK------------------RAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 359 AYLDLSYN 366
             +     
Sbjct: 323 LAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 51/326 (15%), Positives = 93/326 (28%), Gaps = 87/326 (26%)

Query: 603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM 662
           V  S     + +P +I    +L        N ++ +  +      +L  L L  N +S +
Sbjct: 38  VQCSDLGLKA-VPKEISPDTTL---LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 663 IPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722
                  +   +L  L + +N+L            SL  L ++ N++  +     +    
Sbjct: 94  HEKAFSPLR--KLQKLYISKNHLVEIPPNLPS---SLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNK 782
           +  +++G N               L         F G             L  + ++  K
Sbjct: 149 MNCIEMGGNP--------------LENSGFEPGAFDG-----------LKLNYLRISEAK 183

Query: 783 FSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKI 842
            +  +P+     L                     L+L                       
Sbjct: 184 LT-GIPKDLPETLNE-------------------LHLDH--------------------- 202

Query: 843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMN 902
            N   +I     +              L  L L HN +       +  L  +  L L  N
Sbjct: 203 -NKIQAI--ELEDLLR--------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 903 NLSGTIPAQLASLNFLSVLNLSYNHL 928
            LS  +PA L  L  L V+ L  N++
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 46/244 (18%), Positives = 75/244 (30%), Gaps = 52/244 (21%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           L + +  I   +        L+ +  + +  N    +    G  +   L  L +S A   
Sbjct: 128 LRIHDNRIRK-VP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA--- 182

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNL-AELRELYLDGVNISAPG 177
                                             L+G+ ++L   L EL+LD   I A  
Sbjct: 183 ---------------------------------KLTGIPKDLPETLNELHLDHNKIQA-- 207

Query: 178 IEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFS 237
           IE  + L     KL  L L    +    + SLS L +L  + LD N L   VP  L D  
Sbjct: 208 IE-LEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLK 264

Query: 238 NLTSLYLSSCGLH----GAFP--EKILQLPTLETLDLSYNELLQGSLPD--FHQNLSLET 289
            L  +YL +  +       F      ++      + L  N +    +    F        
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 290 LILS 293
           +   
Sbjct: 325 IQFG 328

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  107 bits (268), Expect = 4e-24
 Identities = 50/286 (17%), Positives = 99/286 (34%), Gaps = 26/286 (9%)

Query: 330 SDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSI-GWEQLLNLFHVDL 388
              ++ +  ++     +    + +   ++  +  + +     I S+ G + L N+  + L
Sbjct: 18  DAFAETIKDNLKKKSVTD-AVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFL 72

Query: 389 SHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASS-SLLDTLDLSDNNLEGPIP 447
           + N L   I + L  L  +  L L +N+    + ++S+      L +L L  N +     
Sbjct: 73  NGNKLT-DI-KPLTNLKNLGWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGISDING 126

Query: 448 LSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLT 507
           L    L  L+ L L +NK     ++  + RL  L  L L  N+++ +   +       L 
Sbjct: 127 LV--HLPQLESLYLGNNKIT---DITVLSRLTKLDTLSLEDNQISDIVPLAGL---TKLQ 178

Query: 508 TLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSL 567
            L L+   +S +  L     L  L+L   +   +  N        +    N   N   SL
Sbjct: 179 NLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQ-----SNLVVPNTVKNTDGSL 233

Query: 568 EQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSS 613
             P  ISD       ++  +  +            V          
Sbjct: 234 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.8 bits (235), Expect = 4e-20
 Identities = 59/271 (21%), Positives = 106/271 (39%), Gaps = 33/271 (12%)

Query: 349 IPSLHMFRNLAYLDLSYNIFTGGISSI-GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMV 407
           I     F      +L        ++      +L ++  +  +++++  S+ Q +  LP V
Sbjct: 14  IFPDDAFAETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNV 67

Query: 408 QHLLLADNQFDGHVTEISNASS-SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKF 466
             L L  N+    +T+I   ++   L  L L +N ++    L   +LK LK L L  N  
Sbjct: 68  TKLFLNGNK----LTDIKPLTNLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSLEHNGI 121

Query: 467 VGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPNLRK 524
               +++ +  L  L  L L  N++     + +     L  L TLSL   ++S I  L  
Sbjct: 122 ---SDINGLVHLPQLESLYLGNNKI-----TDITVLSRLTKLDTLSLEDNQISDIVPLAG 173

Query: 525 QTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDL 584
            TKL +L LS N IS ++   L  +     + L L     ++ +     S+L   + +  
Sbjct: 174 LTKLQNLYLSKNHIS-DLRA-LAGLKN--LDVLELFSQECLN-KPINHQSNLVVPNTV-- 226

Query: 585 HSNQIQGKIPPLPPNAAYVDYSGNNFTSSIP 615
                 G +      +   DY   N    +P
Sbjct: 227 --KNTDGSLVTPEIISDDGDYEKPNVKWHLP 255

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.7 bits (227), Expect = 3e-19
 Identities = 39/257 (15%), Positives = 94/257 (36%), Gaps = 27/257 (10%)

Query: 506 LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLV 565
           +      S  +  I       +    +L    ++  +     +   +S + +  +++ + 
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSDIK 56

Query: 566 SLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSIPVDIGSFMS 623
           S++    I  L +++ L L+ N++   I PL    N  ++    N        D+ S   
Sbjct: 57  SVQ---GIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIK-----DLSSLKD 107

Query: 624 LS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLR 681
           L      S   N ++ +    + +   L  L L  N ++ +    L  +  ++L  L+L 
Sbjct: 108 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRL--TKLDTLSLE 161

Query: 682 RNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWV 741
            N +  +          L+ L L+ N +  +  ++LA    L++L+L + +  +      
Sbjct: 162 DNQI--SDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 217

Query: 742 KNASRLHVLILRSNNFF 758
            N    + +     +  
Sbjct: 218 SNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.8 bits (222), Expect = 1e-18
 Identities = 50/338 (14%), Positives = 101/338 (29%), Gaps = 58/338 (17%)

Query: 456 LKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL--LTTLSLAS 513
           +   +  S   +  I  D         + +L    +     +       L  +  +   +
Sbjct: 1   MGETITVSTP-IKQIFPDD--AFAETIKDNLKKKSV-----TDAVTQNELNSIDQIIANN 52

Query: 514 CKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSI 573
             + ++  ++    +  L L+ N+++ +I          +   L L  N +  L    S+
Sbjct: 53  SDIKSVQGIQYLPNVTKLFLNGNKLT-DIKPLT---NLKNLGWLFLDENKIKDLS---SL 105

Query: 574 SDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFS 631
            DL  L  L L  N I   I  L   P    +    N  T                    
Sbjct: 106 KDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITD------------------- 145

Query: 632 KNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA 691
                      +   T L  L L  N +S ++P  L  +  ++L  L L +N++  +   
Sbjct: 146 --------ITVLSRLTKLDTLSLEDNQISDIVP--LAGL--TKLQNLYLSKNHI--SDLR 191

Query: 692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLI 751
                 +L  L+L   +         +N  V   +   +       P  + +        
Sbjct: 192 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPN 249

Query: 752 LRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQ 789
           ++ +           +  +     I  A  +F GR+ Q
Sbjct: 250 VKWHL---PEFTNEVSFIFYQPVTIGKAKARFHGRVTQ 284

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.0 bits (194), Expect = 4e-15
 Identities = 57/291 (19%), Positives = 107/291 (36%), Gaps = 35/291 (12%)

Query: 56  VIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNA 115
            I  +L ++S++    ++ +   L  +  +    +  +   +  G+  L N+T L L+  
Sbjct: 23  TIKDNLKKKSVT----DAVTQNELNSIDQIIANNS--DIKSV-QGIQYLPNVTKLFLNGN 75

Query: 116 GFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENP--NLSGLLQNLAELRELYLDGVNI 173
                 P+  + +  L  L L            EN   +LS L ++L +L+ L L+   I
Sbjct: 76  KLTDIKPL--TNLKNLGWLFLD-----------ENKIKDLSSL-KDLKKLKSLSLEHNGI 121

Query: 174 SAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFL 233
           S   I     L  L P+L+ L L    ++      LS L  L  + L+ N +       L
Sbjct: 122 SD--IN---GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VPL 171

Query: 234 ADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
           A  + L +LYLS   +  +    +  L  L+ L+L   E L   +      +   T+  +
Sbjct: 172 AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNH 344
             +       S         V+++L  F   +         +      F+ 
Sbjct: 230 DGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 5e-15
 Identities = 56/284 (19%), Positives = 100/284 (35%), Gaps = 33/284 (11%)

Query: 63  EESISAG--IDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQ 120
            E+I+    I       +       NL     + T+       L ++  +  +N+     
Sbjct: 2   GETITVSTPIKQIFPDDAFAETIKDNLKKK--SVTDA-VTQNELNSIDQIIANNSDIKSV 58

Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEW 180
             IQ   +  +  L L+G        KL   ++   L NL  L  L+LD   I    +  
Sbjct: 59  QGIQ--YLPNVTKLFLNGN-------KLT--DIKP-LTNLKNLGWLFLDENKIKD--LS- 103

Query: 181 CQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLT 240
             +L  L  KL+ LSL    +S  ++  L +L  L  + L  N +       L+  + L 
Sbjct: 104 --SLKDL-KKLKSLSLEHNGISD-ING-LVHLPQLESLYLGNNKITD--ITVLSRLTKLD 156

Query: 241 SLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGI 300
           +L L    +       +  L  L+ L LS N +    L       +L+ L L +      
Sbjct: 157 TLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNK 212

Query: 301 LPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNH 344
             +   NL   + V+    +     P  +SD       ++ ++ 
Sbjct: 213 PINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHL 254

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 7e-15
 Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 31/269 (11%)

Query: 99  SGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQ 158
                       NL        +    + +  +  +  +          ++       +Q
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK----SVQG------IQ 62

Query: 159 NLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVD-PSLSNLRSLSV 217
            L  + +L+L+G  ++   I+    L++L   L  L L    +    D  SL +L+ L  
Sbjct: 63  YLPNVTKLFLNGNKLT--DIK---PLTNL-KNLGWLFLDENKIK---DLSSLKDLKKLKS 113

Query: 218 IRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGS 277
           + L+ N +       L     L SLYL +  +       + +L  L+TL L  N++    
Sbjct: 114 LSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--SD 167

Query: 278 LPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVY 337
           +        L+ L LS  + S +   ++  LKNL  +E +            S+L     
Sbjct: 168 IVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 338 LDMSFNHFSGPIPSLHMFRNLAYLDLSYN 366
           +  +      P        +    ++ ++
Sbjct: 226 VKNTDGSLVTPEIISDDG-DYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 3e-08
 Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 31/236 (13%)

Query: 699 LRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFF 758
           +         ++ + P      +     +L      D         + +  +I  +N+  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIA-NNSDI 55

Query: 759 GNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGR-----SQSELKHLQ 813
            ++   +Y  +   +  + L  NK +   P   L NL  + +DE +     S  +LK L+
Sbjct: 56  KSVQGIQYLPN---VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLK 112

Query: 814 YRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCAL 873
              L+L        I+  I GL       L    S+    N         +  L  L  L
Sbjct: 113 S--LSLEHNG----IS-DINGLVH-----LPQLESLYLGNNKITDITV--LSRLTKLDTL 158

Query: 874 NLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV 929
           +L  N ++  I  L   L ++++L LS N++S  + A LA L  L VL L     +
Sbjct: 159 SLEDNQIS-DIVPL-AGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 2e-07
 Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 49/283 (17%)

Query: 647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANC-SLRTLDLN 705
              +  +L    ++  +      ++   +  +    +++    S        ++  L LN
Sbjct: 21  AETIKDNLKKKSVTDAVT--QNELN--SIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 73

Query: 706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPR 765
           GN+L  + P  L N   L  L L  N+  D     +K+  +L  L L  N     IS   
Sbjct: 74  GNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNG----ISDIN 125

Query: 766 YNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQ 825
             V  P L+ + L +NK         + ++  +        S L  L    L+L      
Sbjct: 126 GLVHLPQLESLYLGNNK---------ITDITVL--------SRLTKLDT--LSLEDNQ-- 164

Query: 826 DAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIP 885
             I+  I  L       L    ++  S+N+        +  L++L  L L          
Sbjct: 165 --IS-DIVPLAG-----LTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPI 214

Query: 886 SLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
           +   NL    ++  +  +L    P  ++        N+ ++  
Sbjct: 215 NHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLP 255

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (258), Expect = 6e-23
 Identities = 79/453 (17%), Positives = 160/453 (35%), Gaps = 55/453 (12%)

Query: 326 PTSMSDLSQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLF 384
              +S LS+L  L +S N             ++L YLD+S+N     + +I    + +L 
Sbjct: 69  MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN----RLQNISCCPMASLR 124

Query: 385 HVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE 443
           H+DLS N+         F  L  +  L L+  +F                 LDL   +++
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 444 GPIPLSFFELKNLKI-LLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYC- 501
           G    S        + L+   N         ++  L +L   ++  N        +    
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 502 --FPPLLTTLSLASCKLS-----AIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSF 554
               P L  ++L   + +      +        + +L++ +  I+  I    +   + + 
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 555 NHLNLSH--NLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPP----NAAYVDYSGN 608
             L + H  N +    +    S    +++  L  +     I  + P    +  +++++ N
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQN 363

Query: 609 NFTSSIPVDIGSFMSLSIFFSFSKNSLT---------------------------GVIPE 641
            FT S+     +   L       +N L                                 
Sbjct: 364 VFTDSVFQGCSTLKRLQTL-ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422

Query: 642 SICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT 701
           +   A ++LVL+LS N L+G +  CL      ++ VL+L  N +  ++        +L+ 
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLP----PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 702 LDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
           L++  NQL+ +        + L+ + L +N +D
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 1e-21
 Identities = 83/476 (17%), Positives = 159/476 (33%), Gaps = 70/476 (14%)

Query: 480 NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQ 537
               L LS N ++ +       F   L  L L+  ++ ++          L +LD+S N+
Sbjct: 53  RTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 538 ISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP 597
           +       +      S  HL+LS N    L       +LT L+ L L + + +       
Sbjct: 112 LQNISCCPM-----ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 598 PNAAYVDYSGNNFTSSIP-VDIGSFMSLSIFF---SFSKNSLTGVIPE-SICNATNLLVL 652
            +        +  +  I   +  S    +       F  NSL  V    S+    +L + 
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 653 DLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPA-----NCSLRTLDLNGN 707
           ++  N  +       ++       +LN+   ++  T   +           +  L++   
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 708 QLEGMVPKSLANCS-----VLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF-FGNI 761
            +   + +     S      L I  + N  F  +        + +++ +L  ++  F ++
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 762 SCPRYNVSWPMLQIIDLASNKFS-------GRLPQKWLLNLEAMMVDEGRSQSELKHLQY 814
            CP    S      ++   N F+         L +   L L          ++ LK+   
Sbjct: 347 VCPPSPSS---FTFLNFTQNVFTDSVFQGCSTLKRLQTLIL---------QRNGLKNFFK 394

Query: 815 RFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFE-GPIPEEMGLLQSLCAL 873
             L                         ++   ++D S N+             +S+  L
Sbjct: 395 VALMTKN---------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433

Query: 874 NLSHNALTGSI-PSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
           NLS N LTGS+   L   ++    LDL  N +  +IP  +  L  L  LN++ N L
Sbjct: 434 NLSSNMLTGSVFRCLPPKVKV---LDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.8 bits (233), Expect = 6e-20
 Identities = 80/483 (16%), Positives = 146/483 (30%), Gaps = 77/483 (15%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGM 139
            ++L+L+ N    +E+    +  L+ L  L LS+      +   V      L  LD+S  
Sbjct: 54  TKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVS-- 108

Query: 140 YFVRAPLKLENPNLSGL-LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSG 198
                     +  L  +    +A LR L L   N                    VL +  
Sbjct: 109 ----------HNRLQNISCCPMASLRHLDLSF-N-----------------DFDVLPVCK 140

Query: 199 CFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLAD------FSNLTSLYLSSCGLHGA 252
            F          NL  L+ + L            +A         +L S ++   G   +
Sbjct: 141 EF---------GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG-GETES 190

Query: 253 FPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLS 312
                  +  L     S   +      +   +L L  + L+  N   ++    +  +  +
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250

Query: 313 RVEFYLCNFNGPIPTSMSDL-----SQLVYLDMSFNHFSGPIP------SLHMFRNLAYL 361
            +   L +       S+          + YL++     +  I       S    ++L   
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310

Query: 362 DLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHV 421
            +   +F     ++       +    LS ++                 L    N F    
Sbjct: 311 HVKNQVFLFSKEALY-SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF---T 366

Query: 422 TEISNASSSL--LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDA---IQ 476
             +    S+L  L TL L  N L+          KN+  L                    
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425

Query: 477 RLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLDLSD 535
              ++  L+LS N L    GS   C PP +  L L + ++ +IP  +     L  L+++ 
Sbjct: 426 WAESILVLNLSSNML---TGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS 482

Query: 536 NQI 538
           NQ+
Sbjct: 483 NQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.4 bits (219), Expect = 3e-18
 Identities = 99/534 (18%), Positives = 180/534 (33%), Gaps = 69/534 (12%)

Query: 382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNAS-SSL--LDTLDLS 438
               VD S+ NL   +P+ L   P  + L L+ N      +E+     S L  L  L LS
Sbjct: 32  LESMVDYSNRNLT-HVPKDL--PPRTKALSLSQNSI----SELRMPDISFLSELRVLRLS 84

Query: 439 DNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAI--QRLRNLFRLDLSYNRLAVVAG 496
            N +       F   ++L+ L +S N+      L  I    + +L  LDLS+N   V+  
Sbjct: 85  HNRIRSLDFHVFLFNQDLEYLDVSHNR------LQNISCCPMASLRHLDLSFNDFDVLPV 138

Query: 497 SSVYCFPPLLTTLSLASCKLSAIPNLR---KQTKLYHLDLSDNQISGEIPNWLWKIGKDS 553
              +     LT L L++ K   +  L           LDL    I G     L      +
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTT 197

Query: 554 FNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSS 613
             HL    N L S++   S++ L  L + ++  N    +      +      +  N T  
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 614 IPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDS 673
             ++     S+ +F  F    +             L + +L+               +  
Sbjct: 258 -HIETTWKCSVKLFQFFWPRPVE-----------YLNIYNLTITERIDREEFTYSETALK 305

Query: 674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF 733
            L + +++      +  A +     +    L+ +    +      + S    L+   N F
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 734 DDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLL 793
            D+         RL  LIL+ N                 L+     +      +     L
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNG----------------LKNFFKVALMTKN-MSSLETL 408

Query: 794 NLEAMMVDEGRSQ---SELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSID 850
           ++    ++        +  + +    LNLS      ++    + L  K+         +D
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILV--LNLSSNMLTGSVF---RCLPPKV-------KVLD 456

Query: 851 FSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIP-SLIGNLREIESLDLSMNN 903
              N     IP+++  LQ+L  LN++ N L  S+P  +   L  ++ + L  N 
Sbjct: 457 LHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.0 bits (205), Expect = 2e-16
 Identities = 72/425 (16%), Positives = 141/425 (33%), Gaps = 51/425 (12%)

Query: 79  LKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSG 138
           +  L+ L+L+FN F+   +    GNLT LT L LS A        +   +  +  L LS 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA------KFRQLDLLPVAHLHLSC 173

Query: 139 MYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPK-LQVLSLS 197
           +        ++    +  LQ       L+L     S   ++   ++++L    L  + L+
Sbjct: 174 ILLDLVSYHIKG-GETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231

Query: 198 GCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSN-----LTSLYLSSCGLHG- 251
                  +       R  +++ + +  + +     +  F       +  L + +  +   
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291

Query: 252 ----AFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKN 307
                F      L +L    +     L      +     +   +LS ++   I      +
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351

Query: 308 LKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHF---SGPIPSLHMFRNLAYLDLS 364
             + + + F    F   +    S L +L  L +  N                +L  LD+S
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411

Query: 365 YNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEI 424
            N               ++  ++LS N L GS+ + L                       
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL----------------------- 448

Query: 425 SNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRL 484
                  +  LDL +N +   IP     L+ L+ L ++SN+   ++      RL +L  +
Sbjct: 449 ----PPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI 502

Query: 485 DLSYN 489
            L  N
Sbjct: 503 WLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 71.4 bits (175), Expect = 7e-13
 Identities = 59/366 (16%), Positives = 113/366 (30%), Gaps = 37/366 (10%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           LDL    I  G   S  + +   L  L    N   + ++   +  L +L   N+      
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLH-LVFHPNSLFSVQVNMSVNALGHLQLSNI-KLNDE 233

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGI 178
               +            L  +         +             +  L +  + I+    
Sbjct: 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293

Query: 179 EWCQALSSLVPK-LQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFS 237
                 S    K L +  +         +   S    +++  L ++D            S
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 238 NLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNF 297
           + T L  +      +  +    L  L+TL L  N L   +                    
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL--KNFFK----------------- 394

Query: 298 SGILPDSIKNLKNLSRVEFYLCNF-NGPIPTSMSDLSQLVYLDMSFNHF-SGPIPSLHMF 355
              +    KN+ +L  ++  L +  +     + +    ++ L++S N         L   
Sbjct: 395 ---VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449

Query: 356 RNLAYLDLSYNIFTGGISSI--GWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLL 412
             +  LDL  N     I SI      L  L  ++++ N L  S+P  +F+ L  +Q++ L
Sbjct: 450 PKVKVLDLHNN----RIMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWL 504

Query: 413 ADNQFD 418
            DN +D
Sbjct: 505 HDNPWD 510

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 7e-23
 Identities = 67/259 (25%), Positives = 101/259 (38%), Gaps = 41/259 (15%)

Query: 349 IPSLHMFRNLAYLDLSYNIFTGGISSIGWEQ---LLNLFHVDLSHNNLGGSIPQSLFE-L 404
           +P   +  N   L+L  N     I  I       L +L  + LS N++  +I    F  L
Sbjct: 58  VPD-GISTNTRLLNLHEN----QIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGL 111

Query: 405 PMVQHLLLADNQFDGHVTEISN---ASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLL 461
             +  L L DN+    +T I N      S L  L L +N +E     +F  + +L+ L L
Sbjct: 112 ANLNTLELFDNR----LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167

Query: 462 SSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAI 519
              K +  I   A + L NL  L+L+   L  +         PL  L  L L+   LSAI
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHLSAI 222

Query: 520 PN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFN------HLNLSHNLLVSLEQPY 571
                +    L  L +  +QI          I +++F+       +NL+HN L  L    
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQ--------VIERNAFDNLQSLVEINLAHNNLTLL-PHD 273

Query: 572 SISDLTSLSVLDLHSNQIQ 590
             + L  L  + LH N   
Sbjct: 274 LFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 98.3 bits (245), Expect = 1e-21
 Identities = 65/311 (20%), Positives = 111/311 (35%), Gaps = 65/311 (20%)

Query: 429 SSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSY 488
           S+    +     NL   +P       N ++L L  N+    I++++ + LR+L  L LS 
Sbjct: 42  SNQFSKVICVRKNLRE-VPDGIST--NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSR 97

Query: 489 NRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPN 544
           N +  +   +   F  L  L TL L   +L+ IPN      +KL  L L +N I   IP+
Sbjct: 98  NHIRTIEIGA---FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPS 153

Query: 545 WLWKIGKDSFNHLNLSH-NLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYV 603
           + +     S   L+L     L  +    +   L++L  L+L    ++             
Sbjct: 154 YAFN-RIPSLRRLDLGELKRLSYI-SEGAFEGLSNLRYLNLAMCNLR------------- 198

Query: 604 DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMI 663
                        +I +   L                        L  LDLS N+LS + 
Sbjct: 199 -------------EIPNLTPL----------------------IKLDELDLSGNHLSAIR 223

Query: 664 PTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVL 723
           P     +    L  L + ++ +       F    SL  ++L  N L  +          L
Sbjct: 224 PGSFQGLM--HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281

Query: 724 EILDLGNNQFD 734
           E + L +N ++
Sbjct: 282 ERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 4e-20
 Identities = 54/288 (18%), Positives = 92/288 (31%), Gaps = 48/288 (16%)

Query: 479 RNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDN 536
               ++      L  V              L+L   ++  I     +    L  L LS N
Sbjct: 43  NQFSKVICVRKNLREVPDG----ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 537 QISGEIPNWLWKIGKDSFN------HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
            I          I   +FN       L L  N L ++    +   L+ L  L L +N I 
Sbjct: 99  HIR--------TIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPI- 148

Query: 591 GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFM-SLSIFFSFSKNSLTGVIPESICNATNL 649
                                 SIP    + + SL          L+ +   +    +NL
Sbjct: 149 ---------------------ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQL 709
             L+L+   L   IP  L  +   +L  L+L  N+L+     +F     L+ L +  +Q+
Sbjct: 188 RYLNLAMCNLR-EIPN-LTPLI--KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 710 EGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
           + +   +  N   L  ++L +N               L  + L  N +
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 56/243 (23%), Positives = 89/243 (36%), Gaps = 28/243 (11%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGM 139
            + LNL  N      I      +L +L  L LS       I I   +G+  L TL+L   
Sbjct: 66  TRLLNLHEN--QIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD- 121

Query: 140 YFVRAPLKLENPNLS----GLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLS 195
                     N  L+    G    L++L+EL+L    I +  I    A + + P L+ L 
Sbjct: 122 ----------N-RLTTIPNGAFVYLSKLKELWLRNNPIES--IPS-YAFNRI-PSLRRLD 166

Query: 196 LSGCFLSGPVDP-SLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFP 254
           L        +   +   L +L  + L M +L   +P        L  L LS   L    P
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNL-TPLIKLDELDLSGNHLSAIRP 224

Query: 255 EKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRV 314
                L  L+ L +  +++       F    SL  + L+  N + +  D    L +L R+
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284

Query: 315 EFY 317
             +
Sbjct: 285 HLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 7e-15
 Identities = 56/299 (18%), Positives = 102/299 (34%), Gaps = 63/299 (21%)

Query: 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS 690
            + +L   +P+ I  +TN  +L+L  N +  +      ++    L +L L RN++     
Sbjct: 51  VRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLR--HLEILQLSRNHIRTIEI 105

Query: 691 ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVL 750
             F    +L TL+L  N+L  +   +    S L+ L L NN  +            L  L
Sbjct: 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165

Query: 751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGR--SQSE 808
            L                     ++  ++   F G      L NL  + +          
Sbjct: 166 DLGELK-----------------RLSYISEGAFEG------LSNLRYLNLAMCNLREIPN 202

Query: 809 LKHLQY-RFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLL 867
           L  L     L+LS                       N  ++I     +F+G        L
Sbjct: 203 LTPLIKLDELDLSG----------------------NHLSAI--RPGSFQG--------L 230

Query: 868 QSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN 926
             L  L +  + +     +   NL+ +  ++L+ NNL+         L+ L  ++L +N
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 8e-15
 Identities = 61/283 (21%), Positives = 104/283 (36%), Gaps = 52/283 (18%)

Query: 148 LENPNLSGLLQNL-AELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVD 206
               NL  +   +    R L L    I    I+   +   L   L++L LS   +     
Sbjct: 50  CVRKNLREVPDGISTNTRLLNLHENQIQI--IKV-NSFKHL-RHLEILQLSRNHIRTIEI 105

Query: 207 PSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLH----GAFPEKILQLPT 262
            + + L +L+ + L  N L +         S L  L+L +  +      AF     ++P+
Sbjct: 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF----NRIPS 161

Query: 263 LETLDLSYNELLQGSLPD--FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCN 320
           L  LDL   + L   + +  F    +L  L L+  N   I                    
Sbjct: 162 LRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLREI-------------------- 200

Query: 321 FNGPIPTSMSDLSQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYNIFTGGISSIGW-- 377
                  +++ L +L  LD+S NH S     S     +L  L +  +     I  I    
Sbjct: 201 ------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS----QIQVIERNA 250

Query: 378 -EQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFD 418
            + L +L  ++L+HNNL   +P  LF  L  ++ + L  N ++
Sbjct: 251 FDNLQSLVEINLAHNNL-TLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNA-TEIPSG-LGNLTNLTTLNLSNAG 116
           L L    I + I  S +   +  L+ L+L        + I  G    L+NL  LNL+   
Sbjct: 141 LWLRNNPIES-IP-SYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 117 FAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAP 176
              +IP  ++ + +L  LDLSG +              G  Q L  L++L++    I   
Sbjct: 197 LR-EIP-NLTPLIKLDELDLSGNHLSAIR--------PGSFQGLMHLQKLWMIQSQIQV- 245

Query: 177 GIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMN 223
            IE   A  +L   L  ++L+   L+       + L  L  I L  N
Sbjct: 246 -IER-NAFDNL-QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNN 903
           N F+ +   R N    +P+  G+  +   LNL  N +     +   +LR +E L LS N+
Sbjct: 43  NQFSKVICVRKNLRE-VPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 904 LSGTIPAQ-LASLNFLSVLNLSYNHL 928
           +  TI       L  L+ L L  N L
Sbjct: 100 IR-TIEIGAFNGLANLNTLELFDNRL 124

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 55/220 (25%), Positives = 79/220 (35%), Gaps = 18/220 (8%)

Query: 385 HVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEG 444
                   L  ++P  +      Q + L  N+   HV   S  +   L  L L  N L  
Sbjct: 15  TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLAR 70

Query: 445 PIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPP 504
               +F  L  L+ L LS N  + +++      L  L  L L    L  +       F  
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL---FRG 127

Query: 505 L--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLS 560
           L  L  L L    L A+P+   R    L HL L  N+IS         +   S + L L 
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH--SLDRLLLH 185

Query: 561 HNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNA 600
            N +  +  P++  DL  L  L L +N +      LP  A
Sbjct: 186 QNRVAHVH-PHAFRDLGRLMTLYLFANNLSA----LPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 59/260 (22%), Positives = 83/260 (31%), Gaps = 57/260 (21%)

Query: 479 RNLFRLDLSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLS 534
               R+ L  NR++ V  +S   F     LT L L S  L+ I          L  LDLS
Sbjct: 32  AASQRIFLHGNRISHVPAAS---FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 535 DNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIP 594
           DN     +    +  G    + L+L    L  L  P     L +L  L L  N +Q  +P
Sbjct: 89  DNAQLRSVDPATFH-GLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQ-ALP 145

Query: 595 PLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDL 654
                                    +F  L                       NL  L L
Sbjct: 146 D-----------------------DTFRDL----------------------GNLTHLFL 160

Query: 655 SYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVP 714
             N +S +       +    L  L L +N +       F     L TL L  N L  +  
Sbjct: 161 HGNRISSVPERAFRGLH--SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218

Query: 715 KSLANCSVLEILDLGNNQFD 734
           ++LA    L+ L L +N + 
Sbjct: 219 EALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.2 bits (201), Expect = 7e-17
 Identities = 48/258 (18%), Positives = 73/258 (28%), Gaps = 52/258 (20%)

Query: 502 FPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNL 559
            P     + L   ++S +P    R    L  L L  N ++          G      L+L
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT--GLALLEQLDL 87

Query: 560 SHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIG 619
           S N  +    P +   L  L  L L    +Q ++ P                       G
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP-----------------------G 123

Query: 620 SFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLN 679
            F  L                        L  L L  N L  +      ++    L  L 
Sbjct: 124 LFRGL----------------------AALQYLYLQDNALQALPDDTFRDLG--NLTHLF 159

Query: 680 LRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPC 739
           L  N ++      F    SL  L L+ N++  + P +  +   L  L L  N        
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 740 WVKNASRLHVLILRSNNF 757
            +     L  L L  N +
Sbjct: 220 ALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 56/241 (23%), Positives = 86/241 (35%), Gaps = 25/241 (10%)

Query: 235 DFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSA 294
                 +      GL  A P  I      + + L  N +       F    +L  L L +
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 295 TNFSGILPDSIKNLKNLSRVEFYLCNFNGPI----PTSMSDLSQLVYLDMSFNHFSGPIP 350
              + I   +   L  L   +  L + N  +    P +   L +L  L +        + 
Sbjct: 66  NVLARIDAAAFTGLALLE--QLDLSD-NAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LG 121

Query: 351 SLHMFRNLA---YLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPM 406
              +FR LA   YL L  N     +    +  L NL H+ L  N +  S+P+  F  L  
Sbjct: 122 P-GLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHS 178

Query: 407 VQHLLLADNQFDGHVTEI-SNASSSL--LDTLDLSDNNLEGPIPLSFFELKNLKILLLSS 463
           +  LLL  N+       +  +A   L  L TL L  NNL      +   L+ L+ L L+ 
Sbjct: 179 LDRLLLHQNRV----AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

Query: 464 N 464
           N
Sbjct: 235 N 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.0 bits (185), Expect = 1e-14
 Identities = 53/223 (23%), Positives = 76/223 (34%), Gaps = 34/223 (15%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGM 139
            Q + L  N    + +P+       NLT L L +   A +I     +G+  L  LDLS  
Sbjct: 34  SQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD- 89

Query: 140 YFVRAPLKLENPNLS----GLLQNLAELRELYLDGVNISA--PGIEWCQALSSLVPKLQV 193
                     N  L          L  L  L+LD   +    PG         L   LQ 
Sbjct: 90  ----------NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG-----LFRGL-AALQY 133

Query: 194 LSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAF 253
           L L    L    D +  +L +L+ + L  N + S          +L  L L    +    
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV 192

Query: 254 PEKILQ-LPTLETLDLSYNELLQGSLPD--FHQNLSLETLILS 293
                + L  L TL L  N L   +LP        +L+ L L+
Sbjct: 193 HPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.9 bits (164), Expect = 5e-12
 Identities = 52/237 (21%), Positives = 78/237 (32%), Gaps = 37/237 (15%)

Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
              Q + L G  +S     S    R+L+++ L  N L           + L  L LS   
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 249 LHGAFPEKILQ-LPTLETLDLSYNELLQGSLPD--FHQNLSLETLILSATNFSGILPDSI 305
              +        L  L TL L    L    L    F    +L+ L L       +  D+ 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 306 KNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR---NLAYLD 362
           ++L NL+                         L +  N  S  +P    FR   +L  L 
Sbjct: 150 RDLGNLTH------------------------LFLHGNRISS-VPE-RAFRGLHSLDRLL 183

Query: 363 LSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFD 418
           L  N     +    +  L  L  + L  NNL  ++P      L  +Q+L L DN + 
Sbjct: 184 LHQNRVA-HVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 49/206 (23%), Positives = 81/206 (39%), Gaps = 15/206 (7%)

Query: 146 LKLENPNLS----GLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFL 201
           + L    +S       +    L  L+L    ++   I+   A + L   L+ L LS    
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--IDA-AAFTGL-ALLEQLDLSDNAQ 92

Query: 202 SGPVDPS-LSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQ- 259
              VDP+    L  L  + LD   L    P      + L  LYL    L  A P+   + 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD 151

Query: 260 LPTLETLDLSYNELLQGSLPD--FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFY 317
           L  L  L L  N +   S+P+  F    SL+ L+L     + + P + ++L  L  +  +
Sbjct: 152 LGNLTHLFLHGNRI--SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 318 LCNFNGPIPTSMSDLSQLVYLDMSFN 343
             N +     +++ L  L YL ++ N
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 62/298 (20%), Positives = 87/298 (29%), Gaps = 83/298 (27%)

Query: 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS 690
            +  L   +P  I        + L  N +S +            L +L L  N L    +
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACR--NLTILWLHSNVLARIDA 73

Query: 691 ATFPANCSLRTLDLNGN-QLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHV 749
           A F     L  LDL+ N QL  + P +      L  L L      +  P   +  + L  
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 750 LILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSEL 809
           L L+ N                   +  L  + F        L NL              
Sbjct: 134 LYLQDN------------------ALQALPDDTFRD------LGNL-------------- 155

Query: 810 KHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQS 869
                  L L                        N  +S+      F G        L S
Sbjct: 156 -----THLFLHG----------------------NRISSV--PERAFRG--------LHS 178

Query: 870 LCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQ-LASLNFLSVLNLSYN 926
           L  L L  N +    P    +L  + +L L  NNLS  +P + LA L  L  L L+ N
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 54/310 (17%), Positives = 85/310 (27%), Gaps = 84/310 (27%)

Query: 597 PPNAAYVDYSGNNFTSSIPVDI-GSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLS 655
                          + +PV I  +   + +      N ++ V   S     NL +L L 
Sbjct: 10  NEPKVTTSCPQQGLQA-VPVGIPAASQRIFL----HGNRISHVPAASFRACRNLTILWLH 64

Query: 656 YNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA-TFPANCSLRTLDLNGNQLEGMVP 714
            N L+ +       ++   L  L+L  N    +V   TF     L TL L+   L+ + P
Sbjct: 65  SNVLARIDAAAFTGLA--LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP 122

Query: 715 KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQ 774
                 + L+ L L +N          ++   L  L L  N                  +
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN------------------R 164

Query: 775 IIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKG 834
           I  +    F G                       L  L    L L Q             
Sbjct: 165 ISSVPERAFRG-----------------------LHSLDR--LLLHQ------------- 186

Query: 835 LEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREI 894
                    N    +    + F          L  L  L L  N L+      +  LR +
Sbjct: 187 ---------NRVAHVH--PHAFRD--------LGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 895 ESLDLSMNNL 904
           + L L+ N  
Sbjct: 228 QYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 44/258 (17%), Positives = 72/258 (27%), Gaps = 53/258 (20%)

Query: 671 SDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGN 730
            +      +  +  L   V    PA    + + L+GN++  +   S   C  L IL L +
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 731 NQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQK 790
           N             + L  L L  N    ++  P        L  + L        L   
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQ-ELGPG 123

Query: 791 WLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSID 850
               L A+                ++L L                        N   ++ 
Sbjct: 124 LFRGLAAL----------------QYLYLQD----------------------NALQAL- 144

Query: 851 FSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPA 910
              + F          L +L  L L  N ++         L  ++ L L  N ++   P 
Sbjct: 145 -PDDTFRD--------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 911 QLASLNFLSVLNLSYNHL 928
               L  L  L L  N+L
Sbjct: 196 AFRDLGRLMTLYLFANNL 213

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.0 bits (247), Expect = 1e-22
 Identities = 59/303 (19%), Positives = 118/303 (38%), Gaps = 28/303 (9%)

Query: 291 ILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP 350
           I   T  + I PD    L N  ++     N    +    +DL  +  L       +  I 
Sbjct: 3   ITQPTAINVIFPDP--ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE 57

Query: 351 SLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHL 410
            +    NL  L+L  N  T  ++ +  + L  +  ++LS N L      ++  L  ++ L
Sbjct: 58  GVQYLNNLIGLELKDNQITD-LAPL--KNLTKITELELSGNPL--KNVSAIAGLQSIKTL 112

Query: 411 LLADNQFDGHVTEISNASS-SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGT 469
            L   Q    +T+++  +  S L  L L  N +    PL+   L NL+ L + + +    
Sbjct: 113 DLTSTQ----ITDVTPLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVS-- 164

Query: 470 IELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLY 529
            +L  +  L  L  L    N+++ ++  +     P L  + L + ++S +  L   + L+
Sbjct: 165 -DLTPLANLSKLTTLKADDNKISDISPLASL---PNLIEVHLKNNQISDVSPLANTSNLF 220

Query: 530 HLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQI 589
            + L++  I+ +          ++    N+      +   P +ISD  + +  +L  N  
Sbjct: 221 IVTLTNQTITNQPV-----FYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLT 275

Query: 590 QGK 592
              
Sbjct: 276 SFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 97.5 bits (243), Expect = 4e-22
 Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 28/286 (9%)

Query: 378 EQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDL 437
             L N   +    +N+  ++ Q+  +L  +  L          +  +   ++  L  L+L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQYLNN--LIGLEL 70

Query: 438 SDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGS 497
            DN +    PL    L  +  L LS N       + AI  L+++  LDL+  ++  V   
Sbjct: 71  KDNQITDLAPLK--NLTKITELELSGNPL---KNVSAIAGLQSIKTLDLTSTQITDVTPL 125

Query: 498 SVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP-NWLWKIGKDSFNH 556
           +       L  L L   +++ I  L   T L +L + + Q+S   P   L K+       
Sbjct: 126 AGL---SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL-----TT 177

Query: 557 LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSI 614
           L    N +  +     ++ L +L  + L +NQI   + PL    N   V  +    T+  
Sbjct: 178 LKADDNKISDIS---PLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQTITN-- 231

Query: 615 PVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLS 660
              +    +L +       S   + P +I +       +L++N  S
Sbjct: 232 -QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.5 bits (212), Expect = 4e-18
 Identities = 55/288 (19%), Positives = 103/288 (35%), Gaps = 26/288 (9%)

Query: 209 LSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL 268
              L +   I    +++   V    AD   +T+L     G+     E +  L  L  L+L
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL 70

Query: 269 SYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTS 328
             N++    L        +  L LS      +   +I  L+++  ++          P  
Sbjct: 71  KDNQI--TDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP-- 124

Query: 329 MSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSI-GWEQLLNLFHVD 387
           ++ LS L  L +  N  +  I  L    NL YL +        +S +     L  L  + 
Sbjct: 125 LAGLSNLQVLYLDLNQITN-ISPLAGLTNLQYLSIGNA----QVSDLTPLANLSKLTTLK 179

Query: 388 LSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISN-ASSSLLDTLDLSDNNLEGPI 446
              N +   I   L  LP +  + L +NQ    ++++S  A++S L  + L++  +    
Sbjct: 180 ADDNKIS-DIS-PLASLPNLIEVHLKNNQ----ISDVSPLANTSNLFIVTLTNQTITN-- 231

Query: 447 PLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVV 494
               F   NL +  +        I    I         +L++N  + +
Sbjct: 232 -QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.8 bits (179), Expect = 7e-14
 Identities = 48/248 (19%), Positives = 92/248 (37%), Gaps = 29/248 (11%)

Query: 513 SCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYS 572
              ++ I           +    + ++  +     +   D    L+     + ++E    
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIE---G 58

Query: 573 ISDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSIPVDIGSFMSLS--IFF 628
           +  L +L  L+L  NQI   + PL        ++ SGN        ++ +   L      
Sbjct: 59  VQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNPLK-----NVSAIAGLQSIKTL 112

Query: 629 SFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT 688
             +   +T V P  +   +NL VL L  N ++ + P  L  +  + L  L++    +  +
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGL--TNLQYLSIGNAQV--S 164

Query: 689 VSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLH 748
                     L TL  + N++  + P  LA+   L  + L NNQ  D  P  + N S L 
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLF 220

Query: 749 VLILRSNN 756
           ++ L +  
Sbjct: 221 IVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.7 bits (171), Expect = 8e-13
 Identities = 52/274 (18%), Positives = 99/274 (36%), Gaps = 35/274 (12%)

Query: 67  SAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVS 126
              I+      +L     +    +  N T+      +L  +TTL+    G      +Q  
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKS--NVTDT-VTQADLDGITTLSAFGTGVTTIEGVQ-- 60

Query: 127 GMTRLVTLDLSGMYFVRAPLKLENPNLSGL--LQNLAELRELYLDGVNISAPGIEWCQAL 184
            +  L+ L+L             +  ++ L  L+NL ++ EL L G  +         A+
Sbjct: 61  YLNNLIGLELK------------DNQITDLAPLKNLTKITELELSGNPLKNV-----SAI 103

Query: 185 SSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYL 244
           + L   ++ L L+   ++      L+ L +L V+ LD+N + +  P  LA  +NL  L +
Sbjct: 104 AGL-QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158

Query: 245 SSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDS 304
            +  +       +  L  L TL    N++    +       +L  + L     S + P  
Sbjct: 159 GNAQVSDL--TPLANLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVSP-- 212

Query: 305 IKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYL 338
           + N  NL  V               ++L     +
Sbjct: 213 LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 56/291 (19%), Positives = 106/291 (36%), Gaps = 41/291 (14%)

Query: 56  VIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNA 115
            I +   + +++    ++ +   L  + +L+        T I  G+  L NL  L L + 
Sbjct: 21  AIKIAAGKSNVT----DTVTQADLDGITTLSAFGT--GVTTI-EGVQYLNNLIGLELKDN 73

Query: 116 GFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENP--NLSGLLQNLAELRELYLDGVNI 173
                 P+    +T++  L+LSG           NP  N+S  +  L  ++ L L    I
Sbjct: 74  QITDLAPL--KNLTKITELELSG-----------NPLKNVSA-IAGLQSIKTLDLTSTQI 119

Query: 174 SAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFL 233
           +   +     L      LQVL L    ++      L+ L +L  + +    +       L
Sbjct: 120 T--DVTPLAGL----SNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD--LTPL 169

Query: 234 ADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
           A+ S LT+L      +       +  LP L  + L  N++    +       +L  + L+
Sbjct: 170 ANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQIS--DVSPLANTSNLFIVTLT 225

Query: 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPI-PTSMSDLSQLVYLDMSFN 343
               +        NL   + V         PI P ++SD       ++++N
Sbjct: 226 NQTITNQPVFYNNNLVVPNVV---KGPSGAPIAPATISDNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 71/284 (25%)

Query: 645 NATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDL 704
              N + +    + ++  +     ++    +  L+     +  T         +L  L+L
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLD--GITTLSAFGTGV--TTIEGVQYLNNLIGLEL 70

Query: 705 NGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCP 764
             NQ+  + P  L N + +  L+L  N   +     +     +  L L S      I+  
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ----ITDV 122

Query: 765 RYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYY 824
                   LQ++ L  N+ +         N+  +        + L +LQY  L++     
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT---------NISPL--------AGLTNLQY--LSIGN--- 160

Query: 825 QDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSI 884
                                 + +    N            L  L  L    N ++  I
Sbjct: 161 -------------------AQVSDLTPLAN------------LSKLTTLKADDNKIS-DI 188

Query: 885 PSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
             L  +L  +  + L  N +S   P  LA+ + L ++ L+   +
Sbjct: 189 SPL-ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 18/175 (10%)

Query: 584 LHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPE 641
                I   I P P   NA  +    +N T ++         ++   S     +T +  E
Sbjct: 4   TQPTAIN-VIFPDPALANAIKIAAGKSNVTDTVT--QADLDGIT-TLSAFGTGVTTI--E 57

Query: 642 SICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT 701
            +    NL+ L+L  N ++ + P  L N+  +++  L L  N L     +      S++T
Sbjct: 58  GVQYLNNLIGLELKDNQITDLAP--LKNL--TKITELELSGNPL--KNVSAIAGLQSIKT 111

Query: 702 LDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNN 756
           LDL   Q+  + P  LA  S L++L L  NQ  +  P  +   + L  L + +  
Sbjct: 112 LDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ 162

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (253), Expect = 2e-22
 Identities = 59/323 (18%), Positives = 102/323 (31%), Gaps = 51/323 (15%)

Query: 434 TLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAV 493
           + +   N + G     F      +   L        + L     +     L L+   L+ 
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS 73

Query: 494 VAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDS 553
           +  +     PP +T L +    L ++P L     L +LD  DN++S  +P         S
Sbjct: 74  LPDN----LPPQITVLEITQNALISLPELPAS--LEYLDACDNRLS-TLPELP-----AS 121

Query: 554 FNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSS 613
             HL++ +N L  L  P        L  ++  +NQ+                        
Sbjct: 122 LKHLDVDNNQLTML--PELP---ALLEYINADNNQLT----------------------M 154

Query: 614 IPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDS 673
           +P    S   LS+      N LT  +PE      +L  LD+S N L   +P   +    S
Sbjct: 155 LPELPTSLEVLSV----RNNQLT-FLPELP---ESLEALDVSTNLLES-LPAVPVRNHHS 205

Query: 674 Q--LGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNN 731
           +        R N +   +     +     T+ L  N L   + +SL+  +          
Sbjct: 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

Query: 732 QFDDTFPCWVKNASRLHVLILRS 754
            F  +          L   +   
Sbjct: 265 YFSMSDGQQNTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.5 bits (245), Expect = 2e-21
 Identities = 52/320 (16%), Positives = 101/320 (31%), Gaps = 36/320 (11%)

Query: 480 NLFRL--DLSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPNLRKQTKLYHLDLSD 535
           N F L  +  YN ++         +              +  ++       +   L L+ 
Sbjct: 9   NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 536 NQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP 595
             +S  +P+ L          L ++ N L+SL  P   + L  L   D   N++   +P 
Sbjct: 69  LNLS-SLPDNLPP----QITVLEITQNALISL--PELPASLEYL---DACDNRLS-TLPE 117

Query: 596 LPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLS 655
           LP +  ++D   N  T  +P        ++       N LT ++PE     T+L VL + 
Sbjct: 118 LPASLKHLDVDNNQLTM-LPELPALLEYINA----DNNQLT-MLPELP---TSLEVLSVR 168

Query: 656 YNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT----LDLNGNQLEG 711
            N L+  +P          L  L++  N L  ++ A    N              N++  
Sbjct: 169 NNQLTF-LPELP-----ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH 221

Query: 712 MVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP 771
            +P+++ +      + L +N         +   +           F  +           
Sbjct: 222 -IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280

Query: 772 MLQIIDLASNKFSGRLPQKW 791
              +           + Q W
Sbjct: 281 ADAVTAWFPENKQSDVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 96.2 bits (239), Expect = 1e-20
 Identities = 57/336 (16%), Positives = 108/336 (32%), Gaps = 56/336 (16%)

Query: 387 DLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPI 446
           +  +N + G+           +   L     +  V+ +     +    L L+  NL   +
Sbjct: 16  NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-L 74

Query: 447 PLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLL 506
           P +      + +L ++ N     I L       +L  LD   NRL+ +        P  L
Sbjct: 75  PDNLP--PQITVLEITQNAL---ISLPE--LPASLEYLDACDNRLSTLPEL-----PASL 122

Query: 507 TTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVS 566
             L + + +L+ +P L     L +++  +NQ++  +P         S   L++ +N L  
Sbjct: 123 KHLDVDNNQLTMLPEL--PALLEYINADNNQLT-MLPELP-----TSLEVLSVRNNQLTF 174

Query: 567 LEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLS- 625
           L          SL  LD+ +N +                       S+P           
Sbjct: 175 LP-----ELPESLEALDVSTNLL----------------------ESLPAVPVRNHHSEE 207

Query: 626 --IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRN 683
             IFF   +N +T  IPE+I +      + L  N LS       ++   +Q         
Sbjct: 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHG---P 262

Query: 684 NLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLAN 719
            +  ++S            D             ++ 
Sbjct: 263 RIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.4 bits (237), Expect = 2e-20
 Identities = 63/409 (15%), Positives = 121/409 (29%), Gaps = 41/409 (10%)

Query: 332 LSQLVYLDMSFNHFSGPIPSLH-----MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHV 386
           L       +S N F   I   +      +       L        +S +    +     +
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 387 DLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPI 446
            L+  NL  S+P +L   P +  L +  N        +    +S L+ LD  DN L   +
Sbjct: 65  QLNRLNL-SSLPDNLP--PQITVLEITQNAL----ISLPELPAS-LEYLDACDNRLST-L 115

Query: 447 PLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLL 506
           P       +LK L + +N+      L  +     L  ++   N+L ++        P  L
Sbjct: 116 PE---LPASLKHLDVDNNQL---TMLPEL--PALLEYINADNNQLTMLPEL-----PTSL 162

Query: 507 TTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIG--KDSFNHLNLSHNLL 564
             LS+ + +L+ +P L +   L  LD+S N +   +P    +    +++        N +
Sbjct: 163 EVLSVRNNQLTFLPELPES--LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 565 VSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSL 624
             +  P +I  L     + L  N +  +I                       D       
Sbjct: 220 THI--PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

Query: 625 SIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN 684
                             +    +    +   N  S  +    ++ + S       R   
Sbjct: 278 RPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL--DRLSDTVSARNTSGFREQ- 334

Query: 685 LNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF 733
               V+A      +   L      +     +S  +   L   +L     
Sbjct: 335 ----VAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.3 bits (190), Expect = 1e-14
 Identities = 61/337 (18%), Positives = 103/337 (30%), Gaps = 65/337 (19%)

Query: 208 SLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPE-KILQLPTLETL 266
            ++N  SLS      N +     ++ + +       L     + A    K   +     L
Sbjct: 6   PINNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 267 DLSYNELLQGSLPD-FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPI 325
            L+   L   SLPD       +  L ++       LP+   +L+                
Sbjct: 65  QLNRLNL--SSLPDNLPPQ--ITVLEITQNALI-SLPELPASLE---------------- 103

Query: 326 PTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFH 385
                      YLD   N  S  +P L    +L +LD+  N  T             L +
Sbjct: 104 -----------YLDACDNRLST-LPEL--PASLKHLDVDNNQLTMLPELPA-----LLEY 144

Query: 386 VDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGP 445
           ++  +N L   +P+    L   + L + +NQ     T +     S L+ LD+S N LE  
Sbjct: 145 INADNNQL-TMLPELPTSL---EVLSVRNNQL----TFLPELPES-LEALDVSTNLLES- 194

Query: 446 IPLSFFELKNLK----ILLLSSNKFVGTIEL-DAIQRLRNLFRLDLSYNRLAVVAGSSVY 500
           +P       + +          N+      + + I  L     + L  N L+    S + 
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRIT---HIPENILSLDPTCTIILEDNPLS----SRIR 247

Query: 501 CFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQ 537
                 T                 Q    H  L+D  
Sbjct: 248 ESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAV 284

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 3e-13
 Identities = 70/354 (19%), Positives = 118/354 (33%), Gaps = 91/354 (25%)

Query: 613 SIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNA----TNLLVLDLSYNYLSGMIPTCLI 668
           SI + I +  SLS    +  N+++G       +A        +   + N    ++  CLI
Sbjct: 2   SIMLPINNNFSLSQNSFY--NTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLI 58

Query: 669 NMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728
           N    Q   L L R NL+ ++    P    +  L++  N L   +P+  A+   LE LD 
Sbjct: 59  N----QFSELQLNRLNLS-SLPDNLPPQ--ITVLEITQNALI-SLPELPAS---LEYLDA 107

Query: 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788
            +N+   T P   +  + L  L + +N        P       +L+ I+  +N+ +  LP
Sbjct: 108 CDNRLS-TLP---ELPASLKHLDVDNNQL---TMLPE---LPALLEYINADNNQLT-MLP 156

Query: 789 QKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS 848
                                  L+   L++                             
Sbjct: 157 ------------------ELPTSLEV--LSVR---------------------------- 168

Query: 849 IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNL----REIESLDLSMNNL 904
                NN    +PE   L +SL AL++S N L  S+P++                  N +
Sbjct: 169 -----NNQLTFLPE---LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI 219

Query: 905 SGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLN 958
           +  IP  + SL+    + L  N L  RI  S   Q+                  
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.3 bits (177), Expect = 4e-13
 Identities = 46/310 (14%), Positives = 99/310 (31%), Gaps = 43/310 (13%)

Query: 57  IGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFN--ATEIPSGLGNLTNLTTLNLSN 114
           +  +    +IS    +  S       +   L     N   + +   L  +   + L L+ 
Sbjct: 13  LSQNSFYNTISGTYADYFSA--WDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNR 68

Query: 115 AGFAGQIPIQVSGMTRLVTLDLSGMYFVRAP--------LKLENPNLSGLLQNLAELREL 166
              +  +P  +    ++  L+++    +  P        L   +  LS L +  A L+ L
Sbjct: 69  LNLS-SLPDNLP--PQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHL 125

Query: 167 YLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLY 226
            +D   ++         L  L   L+ ++     L+  +    ++L  LS   +  N L 
Sbjct: 126 DVDNNQLT--------MLPELPALLEYINADNNQLTM-LPELPTSLEVLS---VRNNQLT 173

Query: 227 SPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLET----LDLSYNELLQGSLPD-F 281
             +PE      +L +L +S+  L  + P   ++    E          N +    +P+  
Sbjct: 174 F-LPELP---ESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI--THIPENI 226

Query: 282 HQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMS 341
                  T+IL     S  + +S+         +++       +     +       D  
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQP--DYHGPRIYFSMSDGQQNTLHRPLADAV 284

Query: 342 FNHFSGPIPS 351
              F     S
Sbjct: 285 TAWFPENKQS 294

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.1 bits (166), Expect = 7e-12
 Identities = 61/320 (19%), Positives = 98/320 (30%), Gaps = 63/320 (19%)

Query: 590 QGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMS---LSIFFSFSKNSLTGVIPESICNA 646
                 L  N+ Y      N  S    D  S             ++N    ++ E  C  
Sbjct: 7   INNNFSLSQNSFY------NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLI 58

Query: 647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPAN-CSLRTLDLN 705
                L L+   LS  +P  L      Q+ VL + +N L      + P    SL  LD  
Sbjct: 59  NQFSELQLNRLNLSS-LPDNLP----PQITVLEITQNAL-----ISLPELPASLEYLDAC 108

Query: 706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPR 765
            N+L   +P+  A+   L+ LD+ NNQ     P        ++      NN    +    
Sbjct: 109 DNRLS-TLPELPAS---LKHLDVDNNQLT-MLPELPALLEYINA----DNNQLTMLP--- 156

Query: 766 YNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQ 825
                  L+++ + +N+ +  LP +   +LEA+ V    S + L+ L    +        
Sbjct: 157 --ELPTSLEVLSVRNNQLT-FLP-ELPESLEALDV----STNLLESLPAVPVRNHH---- 204

Query: 826 DAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIP 885
                                       N     IPE +  L   C + L  N L+  I 
Sbjct: 205 ----------------SEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIR 247

Query: 886 SLIGNLREIESLDLSMNNLS 905
             +                S
Sbjct: 248 ESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.9 bits (163), Expect = 2e-11
 Identities = 45/266 (16%), Positives = 77/266 (28%), Gaps = 36/266 (13%)

Query: 79  LKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSG 138
           +     L L       + +P  L     +T L ++       +P        L  LD   
Sbjct: 58  INQFSELQLNRLNL--SSLPDNLP--PQITVLEITQNAL-ISLP---ELPASLEYLDACD 109

Query: 139 MYFVRAP--------LKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPK 190
                 P        L ++N  L+ L +  A L  +  D   +          L  L   
Sbjct: 110 NRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQL--------TMLPELPTS 161

Query: 191 LQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTS----LYLSS 246
           L+VLS+    L+  +     +L +L    +  N L S +P       +            
Sbjct: 162 LEVLSVRNNQLTF-LPELPESLEALD---VSTNLLES-LPAVPVRNHHSEETEIFFRCRE 216

Query: 247 CGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIK 306
             +    PE IL L    T+ L  N L   S      +                + D  +
Sbjct: 217 NRIT-HIPENILSLDPTCTIILEDNPLS--SRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 307 NLKNLSRVEFYLCNFNGPIPTSMSDL 332
           N  +    +     F     + +S +
Sbjct: 274 NTLHRPLADAVTAWFPENKQSDVSQI 299

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  100 bits (251), Expect = 3e-22
 Identities = 87/462 (18%), Positives = 147/462 (31%), Gaps = 82/462 (17%)

Query: 333 SQLVYLDMSFNHFS--GPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLL-------NL 383
             +  LD+     S       L + +    + L       G++    + +         L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC----GLTEARCKDISSALRVNPAL 58

Query: 384 FHVDLSHNNLGGSIPQSLFEL-----PMVQHLLLADNQF-DGHVTEISNA--SSSLLDTL 435
             ++L  N LG      + +        +Q L L +          +S+   +   L  L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 436 DLSDNNL--EGPIPLSFFELKN---LKILLLSSNKF--VGTIEL-DAIQRLRNLFRLDLS 487
            LSDN L   G   L    L     L+ L L            L   ++   +   L +S
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 488 YNRL---AVVAGSSVYCFPPL-LTTLSLASCKLSA------IPNLRKQTKLYHLDLSDNQ 537
            N +    V          P  L  L L SC +++         +  +  L  L L  N+
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 538 ISGEIPNWLWKIGKD---SFNHLNLSHNLL-----VSLEQPYSISDLTSLSVLDLHSNQI 589
           +       L             L +    +       L +   +    SL  L L  N++
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNEL 296

Query: 590 QGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNA--- 646
                         D        ++        SL +       S T        +    
Sbjct: 297 G-------------DEGARLLCETLLEPGCQLESLWV----KSCSFTAACCSHFSSVLAQ 339

Query: 647 -TNLLVLDLSYNYL--SGMIPTC-LINMSDSQLGVLNLRRNNLN----GTVSATFPANCS 698
              LL L +S N L  +G+   C  +    S L VL L   +++     +++AT  AN S
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399

Query: 699 LRTLDLNGNQL--EGMVP--KSLA-NCSVLEILDLGNNQFDD 735
           LR LDL+ N L   G++   +S+     +LE L L +  + +
Sbjct: 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 96.2 bits (240), Expect = 7e-21
 Identities = 91/468 (19%), Positives = 151/468 (32%), Gaps = 85/468 (18%)

Query: 105 TNLTTLNLSNAGF-AGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAEL 163
            ++ +L++        +    +  + +   + L       A  K    ++S  L+    L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK----DISSALRVNPAL 58

Query: 164 RELYLDGVNISAPGIE-WCQALSSLVPKLQVLSLSGCFLS----GPVDPSLSNLRSLSVI 218
            EL L    +   G+    Q L +   K+Q LSL  C L+    G +  +L  L +L  +
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 219 RLDMNDLYSPVPEFLADF-----SNLTSLYLSSCGLH----GAFPEKILQLPTLETLDLS 269
            L  N L     + L +        L  L L  C L           +   P  + L +S
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 270 YNEL-------LQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFN 322
            N++       L   L        LE L L +   +    D+ ++L  +           
Sbjct: 179 NNDINEAGVRVLCQGLK--DSPCQLEALKLESCGVT---SDNCRDLCGI----------- 222

Query: 323 GPIPTSMSDLSQLVYLDMSFNHFSGP------IPSLHMFRNLAYLDLSYNIFTGGISSIG 376
                 ++  + L  L +  N              LH    L  L +       GI++ G
Sbjct: 223 ------VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC----GITAKG 272

Query: 377 WEQLL-------NLFHVDLSHNNLGGSIPQSLFEL-----PMVQHLLLADNQF-DGHVTE 423
              L        +L  + L+ N LG    + L E        ++ L +    F     + 
Sbjct: 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332

Query: 424 ISNA--SSSLLDTLDLSDNNL--EGPIPLSFF---ELKNLKILLLSSNKF--VGTIEL-D 473
            S+    +  L  L +S+N L   G   L          L++L L+           L  
Sbjct: 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392

Query: 474 AIQRLRNLFRLDLSYNRL----AVVAGSSVYCFPPLLTTLSLASCKLS 517
            +    +L  LDLS N L     +    SV     LL  L L     S
Sbjct: 393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 92.3 bits (230), Expect = 1e-19
 Identities = 85/435 (19%), Positives = 136/435 (31%), Gaps = 84/435 (19%)

Query: 162 ELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLS----GPVDPSLSNLRSLSV 217
           +++ L +    +S         L  L+ + QV+ L  C L+      +  +L    +L+ 
Sbjct: 4   DIQSLDIQCEELSDARW---AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 218 IRLDMNDLYSPVPEFLADF-----SNLTSLYLSSCGLH----GAFPEKILQLPTLETLDL 268
           + L  N+L       +          +  L L +C L     G     +  LPTL+ L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 269 SYNELLQGSLPDF-----HQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNG 323
           S N L    L             LE L L   + S        + + L+ V         
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA------ASCEPLASV--------- 165

Query: 324 PIPTSMSDLSQLVYLDMSFNHFSGP-IPSL-----HMFRNLAYLDLSYNIFTGGISSIGW 377
                +        L +S N  +   +  L          L  L L       G++S   
Sbjct: 166 -----LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC----GVTSDNC 216

Query: 378 EQL-------LNLFHVDLSHNNLGGSIPQSLFELPM-----VQHLLLADNQF-DGHVTEI 424
             L        +L  + L  N LG      L    +     ++ L + +         ++
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 425 SNA--SSSLLDTLDLSDNNL--EGPIPLS---FFELKNLKILLLSSNKF--VGTIEL-DA 474
                +   L  L L+ N L  EG   L          L+ L + S  F           
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 475 IQRLRNLFRLDLSYNRL----AVVAGSSVYCFPPLLTTLSLASCKLSAI------PNLRK 524
           + + R L  L +S NRL           +     +L  L LA C +S          L  
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 525 QTKLYHLDLSDNQIS 539
              L  LDLS+N + 
Sbjct: 397 NHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.7 bits (192), Expect = 6e-15
 Identities = 60/343 (17%), Positives = 103/343 (30%), Gaps = 53/343 (15%)

Query: 429 SSLLDTLDLSDNNL-EGPIPLSFFELKNLKILLLSSNKF--VGTIEL-DAIQRLRNLFRL 484
           S  + +LD+    L +         L+  +++ L           ++  A++    L  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 485 DLSYNRL----AVVAGSSVYCFPPLLTTLSLASCKLSAI------PNLRKQTKLYHLDLS 534
           +L  N L           +      +  LSL +C L+          LR    L  L LS
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 535 DNQISGEIPNWLWKIGKDSF---NHLNLSHNLLVSLEQPY---SISDLTSLSVLDLHSNQ 588
           DN +       L +   D       L L +  L +         +        L + +N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 589 IQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLT----GVIPESIC 644
           I              +         +        +L +        +T      +   + 
Sbjct: 182 IN-------------EAGVRVLCQGLKDSPCQLEALKL----ESCGVTSDNCRDLCGIVA 224

Query: 645 NATNLLVLDLSYNYL--SGMIPTC-LINMSDSQLGVLNLRRNNLN----GTVSATFPANC 697
           +  +L  L L  N L   GM   C  +    S+L  L +    +     G +     A  
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 698 SLRTLDLNGNQLEGMVPKSLA-----NCSVLEILDLGNNQFDD 735
           SL+ L L GN+L     + L          LE L + +  F  
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 77/427 (18%), Positives = 138/427 (32%), Gaps = 120/427 (28%)

Query: 59  LDLSEESIS-AGIDN-SSSLFSLKYLQSLNLAFNMFNATEIPS----GLGNLTNLTTLNL 112
           L L    ++ AG    SS+L +L  LQ L+L+ N+     +       L     L  L L
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 113 SNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVN 172
                     +  +                          L+ +L+   + +EL +   +
Sbjct: 150 EYCS------LSAASCE----------------------PLASVLRAKPDFKELTVSNND 181

Query: 173 ISAPGIEW-CQALSSLVPKLQVLSLSGCFLS----GPVDPSLSNLRSLSVIRLDMNDLYS 227
           I+  G+   CQ L     +L+ L L  C ++      +   +++  SL  + L  N L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 228 PVPEFLADF-----SNLTSLYLSSCGLH----GAFPEKILQLPTLETLDLSYNEL----- 273
                L        S L +L++  CG+     G     +    +L+ L L+ NEL     
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 274 --LQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSD 331
             L  +L        LE+L + + +F+                               S 
Sbjct: 302 RLLCETL--LEPGCQLESLWVKSCSFT---------------------------AACCSH 332

Query: 332 LSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLL--------NL 383
            S +                L   R L  L +S N     +   G  +L          L
Sbjct: 333 FSSV----------------LAQNRFLLELQISNN----RLEDAGVRELCQGLGQPGSVL 372

Query: 384 FHVDLSHNNLG----GSIPQSLFELPMVQHLLLADNQF-DGHVTEISNA---SSSLLDTL 435
             + L+  ++      S+  +L     ++ L L++N   D  + ++  +      LL+ L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 436 DLSDNNL 442
            L D   
Sbjct: 433 VLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.4 bits (134), Expect = 7e-08
 Identities = 60/336 (17%), Positives = 102/336 (30%), Gaps = 54/336 (16%)

Query: 630 FSKNSLTGVIPESICNA----TNLLVLDLSYNYLSGMIPTCLINM---SDSQLGVLNLRR 682
                LT    + I +A      L  L+L  N L  +   C++        ++  L+L+ 
Sbjct: 35  LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 94

Query: 683 NNLNGT----VSATFPANCSLRTLDLNGNQLEGMVPKSLA-----NCSVLEILDLGNNQF 733
             L G     +S+T     +L+ L L+ N L     + L          LE L L     
Sbjct: 95  CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154

Query: 734 DDT----FPCWVKNASRLHVLILRSNNFFGNIS----CPRYNVSWPMLQIIDLASNKFSG 785
                      ++       L + SNN          C     S   L+ + L S   + 
Sbjct: 155 SAASCEPLASVLRAKPDFKELTV-SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT- 212

Query: 786 RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNI 845
                          D     +    L+   L L      D     +  L   L    + 
Sbjct: 213 ----------SDNCRDLCGIVASKASLRE--LALGSNKLGDV---GMAELCPGLLHPSSR 257

Query: 846 FTSIDFSRNNFEGP----IPEEMGLLQSLCALNLSHNALTGS-----IPSLIGNLREIES 896
             ++              +   +   +SL  L+L+ N L          +L+    ++ES
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317

Query: 897 LDLSMNNLSGT----IPAQLASLNFLSVLNLSYNHL 928
           L +   + +        + LA   FL  L +S N L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 48/321 (14%), Positives = 90/321 (28%), Gaps = 66/321 (20%)

Query: 647 TNLLVLDLSYNYLS--GMIPTCLINMSDSQLGVLNLRRNNLNGT----VSATFPANCSLR 700
            ++  LD+    LS         +     Q  V+ L    L       +S+    N +L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALA 59

Query: 701 TLDLNGNQLEGMVPKSLANC-----SVLEILDLGNNQFDDTFPCW------VKNASRLHV 749
            L+L  N+L  +    +          ++ L L N                ++    L  
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA--GCGVLSSTLRTLPTLQE 117

Query: 750 LILRSNNF--------FGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVD 801
           L L  N             +  P+       L+ + L     S            A    
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCR-----LEKLQLEYCSLS-----------AASCEP 161

Query: 802 EGRSQSELKHLQYRFLNLSQAYYQDAITVTI-KGLEMKLAKILNIFTSIDFSRNNFE--- 857
                        + L +S     +A    + +GL+    ++     ++           
Sbjct: 162 LASVLRAKPDF--KELTVSNNDINEAGVRVLCQGLKDSPCQL----EALKLESCGVTSDN 215

Query: 858 -GPIPEEMGLLQSLCALNLSHNALTGS-----IPSLIGNLREIESLDLSMNNLS----GT 907
              +   +    SL  L L  N L         P L+     + +L +    ++    G 
Sbjct: 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275

Query: 908 IPAQLASLNFLSVLNLSYNHL 928
           +   L +   L  L+L+ N L
Sbjct: 276 LCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 7e-07
 Identities = 68/403 (16%), Positives = 112/403 (27%), Gaps = 74/403 (18%)

Query: 577 TSLSVLDLHSNQIQGK----IPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLS---IFFS 629
             +  LD+   ++       + PL      V       T +   DI S + ++      +
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 630 FSKNSLTGVIPESICNA-----TNLLVLDLSYNYLS--GMIPTCLINMSDSQLGVLNLRR 682
              N L  V    +          +  L L    L+  G         +   L  L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 683 NNLNGT-----VSATFPANCSLRTLDLNGNQL--EGMVP--KSLANCSVLEILDLGNNQF 733
           N L                C L  L L    L      P    L      + L + NN  
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 734 DDT-----FPCWVKNASRLHVLILRSNNFFGNISCP------RYNVSWPMLQIIDLASNK 782
           ++            +  +L  L L S     + +C           S   L+ + L SNK
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKAS---LRELALGSNK 238

Query: 783 FSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKI 842
                       +  +        S L+ L      ++     D            L ++
Sbjct: 239 LGDV-------GMAELCPGLLHPSSRLRTLWIWECGITAKGCGD------------LCRV 279

Query: 843 LNIFTSI---DFSRNNF--EGPIPEEMGLLQSLCA---LNLSHNALTG----SIPSLIGN 890
           L    S+     + N    EG       LL+  C    L +   + T        S++  
Sbjct: 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339

Query: 891 LREIESLDLSMNNLSGT----IPAQLASLN-FLSVLNLSYNHL 928
            R +  L +S N L       +   L      L VL L+   +
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 57/348 (16%), Positives = 97/348 (27%), Gaps = 64/348 (18%)

Query: 622 MSLSI-FFSFSKNSLTGVIPESICNA-TNLLVLDLSYNYLS--GMIPTCLINMSDSQLGV 677
           MSL I         L+      +        V+ L    L+             +  L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 678 LNLRRNNLNGTVSATF-----PANCSLRTLDLNGNQL--EGM--VPKSLANCSVLEILDL 728
           LNLR N L               +C ++ L L    L   G   +  +L     L+ L L
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 729 GNNQFDDT-----FPCWVKNASRLHVLILRSNNFFGNISCP------RYNVSWPMLQIID 777
            +N   D          +    RL  L L   +     SC       R     P  + + 
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAK---PDFKELT 176

Query: 778 LASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEM 837
           +++N  +          +  +      S  +L+ L+     ++    +D           
Sbjct: 177 VSNNDINEA-------GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD----------- 218

Query: 838 KLAKILNIFTSI---DFSRNNF--EGPIPEEMGLLQSLCA---LNLSHNALT----GSIP 885
            L  I+    S+       N     G      GLL        L +    +T    G + 
Sbjct: 219 -LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277

Query: 886 SLIGNLREIESLDLSMNNLSGT----IPAQLASLNF-LSVLNLSYNHL 928
            ++     ++ L L+ N L       +   L      L  L +     
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 56/310 (18%), Positives = 101/310 (32%), Gaps = 43/310 (13%)

Query: 436 DLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVA 495
             S  +L   IP    E   +K L LS+N+    I    +QR  NL  L L+ N +  + 
Sbjct: 37  KGSSGSLNS-IPSGLTE--AVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIE 92

Query: 496 GSSVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGK 551
             S   F  L  L  L L+   LS + +   +  + L  L+L  N     +         
Sbjct: 93  EDS---FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL 148

Query: 552 DSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT 611
                L + +    +  Q    + LT L  L++ ++ +Q    P                
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEP---------------- 191

Query: 612 SSIPVDIGSFMSLS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCL-I 668
                   S  S+               ++   +   +++  L+L    L     + L  
Sbjct: 192 -------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 669 NMSDSQLGVLNLRRNNLNG----TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE 724
             ++S +     R   +       V         L  L+ + NQL+ +        + L+
Sbjct: 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

Query: 725 ILDLGNNQFD 734
            + L  N +D
Sbjct: 305 KIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.4 bits (235), Expect = 7e-21
 Identities = 54/265 (20%), Positives = 105/265 (39%), Gaps = 27/265 (10%)

Query: 349 IPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMV 407
           IPS  +   +  LDLS N  T  IS+   ++ +NL  + L+ N +  +I +  F  L  +
Sbjct: 46  IPS-GLTEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSL 102

Query: 408 QHLLLADNQFDGHVTEISN---ASSSLLDTLDLSDNNLEGPIPLSFF-ELKNLKILLLSS 463
           +HL L+ N     ++ +S+      S L  L+L  N  +     S F  L  L+IL + +
Sbjct: 103 EHLDLSYNY----LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 464 NKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPN 521
                 I+      L  L  L++  + L      S      +  ++ L L   +   +  
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS---LKSIQNVSHLILHMKQHILLLE 215

Query: 522 --LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSI----SD 575
             +   + +  L+L D  +     + L     +S        N+ ++ E  + +    + 
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275

Query: 576 LTSLSVLDLHSNQIQGKIPPLPPNA 600
           ++ L  L+   NQ++     +P   
Sbjct: 276 ISGLLELEFSRNQLKS----VPDGI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 52/273 (19%), Positives = 99/273 (36%), Gaps = 25/273 (9%)

Query: 161 AELRELYLDGVNISA--PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVI 218
             ++ L L    I+           L      LQ L L+   ++   + S S+L SL  +
Sbjct: 52  EAVKSLDLSNNRITYISNS-----DLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHL 105

Query: 219 RLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQ-LPTLETLDLSYNELLQGS 277
            L  N L +    +    S+LT L L            +   L  L+ L +   +     
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-K 164

Query: 278 LPD--FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQL 335
           +    F     LE L + A++     P S+K+++N+S +  ++      +   +   S +
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224

Query: 336 VYLDMSFNHF---------SGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHV 386
             L++              +G   SL        + ++       +      Q+  L  +
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK--LLNQISGLLEL 282

Query: 387 DLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFD 418
           + S N L  S+P  +F+ L  +Q + L  N +D
Sbjct: 283 EFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 56/301 (18%), Positives = 101/301 (33%), Gaps = 52/301 (17%)

Query: 46  SGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNL 104
           + + CD  G   G   S  SI +G+  +        ++SL+L+ N    T I +  L   
Sbjct: 26  ASLSCDRNGICKGSSGSLNSIPSGLTEA--------VKSLDLSNN--RITYISNSDLQRC 75

Query: 105 TNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAEL 163
            NL  L L++ G    I     S +  L  LDLS  Y             S   + L+ L
Sbjct: 76  VNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLS--------SSWFKPLSSL 126

Query: 164 RELYLDG---------------VNISAPGIEWCQALSSL-------VPKLQVLSLSGCFL 201
             L L G                 +    +      + +       +  L+ L +    L
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 202 SGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKI---- 257
                 SL +++++S + L M      +  F+   S++  L L    L      ++    
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 258 ----LQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSR 313
               ++  T   + ++   L Q  +   +Q   L  L  S      +       L +L +
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 314 V 314
           +
Sbjct: 306 I 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 45/271 (16%), Positives = 93/271 (34%), Gaps = 32/271 (11%)

Query: 677 VLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736
            L+L  N +    ++      +L+ L L  N +  +   S ++   LE LDL  N   + 
Sbjct: 56  SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 737 FPCWVKNASRLHVLILRSNN--------FFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788
              W K  S L  L L  N          F +++  +      M     +    F+G L 
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-LT 174

Query: 789 QKWLLNLEA--MMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF 846
               L ++A  +   E +S   ++++ +  L++ Q             L      + +  
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ----------HILLLEIFVDVTSSV 224

Query: 847 TSIDFSRNNFEGPIPEEM--------GLLQSLCALNLSHNALTGSIPSLIGNLREIESLD 898
             ++    + +     E+            +   + ++  +L   +  L+  +  +  L+
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283

Query: 899 LSMNNLSGTIPAQ-LASLNFLSVLNLSYNHL 928
            S N L  ++P      L  L  + L  N  
Sbjct: 284 FSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 7e-06
 Identities = 36/247 (14%), Positives = 79/247 (31%), Gaps = 26/247 (10%)

Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
           ++++LDL+ N++  +    L  C  L+ L L +N  +        +   L  L L  N  
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 758 -------FGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELK 810
                  F  +           L  ++L  N +          +L  + +    +     
Sbjct: 113 SNLSSSWFKPL---------SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 811 HLQYR-FLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQS 869
            +Q + F  L+     +     ++  E K  K +   + +          +   + +  S
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 870 LCALNLSHNALTG----SIPSLI----GNLREIESLDLSMNNLSGTIPAQLASLNFLSVL 921
           +  L L    L       + +             ++ ++  +L   +   L  ++ L  L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 922 NLSYNHL 928
             S N L
Sbjct: 283 EFSRNQL 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 92.3 bits (229), Expect = 2e-20
 Identities = 51/274 (18%), Positives = 88/274 (32%), Gaps = 22/274 (8%)

Query: 284 NLSLETLILSATNFSGILP--DSIKNLKNLSRVEFYLCNFNGPIPTSMS---DLSQLVYL 338
             SLE L+      + +    D IK+L  L R+          I         +S L  L
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 339 DMSFNHFSGPIPS---LHMFRNLAYLDLSYNIFTGG---ISSIGWEQLLNLFHVDLSHNN 392
            +     +G  P         +L  L+L    +      ++ +       L  + ++  +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 393 LGGSIPQSLFELPMVQHLLLADNQFDGHVT---EISNASSSLLDTLDLSDNNLE---GPI 446
                 + +   P +  L L+DN   G       +       L  L L +  +E   G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 447 PLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLL 506
                    L+ L LS N         +      L  L+LS+  L  V        P  L
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK----GLPAKL 276

Query: 507 TTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISG 540
           + L L+  +L   P+  +  ++ +L L  N    
Sbjct: 277 SVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.8 bits (194), Expect = 7e-16
 Identities = 55/302 (18%), Positives = 92/302 (30%), Gaps = 36/302 (11%)

Query: 319 CNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWE 378
           CNF+ P P   S  + L   D+               R+L YL    +            
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGG---------RSLEYLLKRVDTEADLGQFTDII 65

Query: 379 QLLNLFHVDLSHNNLGGSIPQSLFEL---PMVQHLLLADNQFDGHV-TEISNASSSLLDT 434
           + L+L  + +    +   I      +     +Q L L + +  G     +  A+   L+ 
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 435 LDLSDNNLEGPIP----LSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNR 490
           L+L + +          L  +    LK+L ++          + ++    L  LDLS N 
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNP 184

Query: 491 LAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIG 550
                G      P    TL                  L   +      SG          
Sbjct: 185 ELGERGLISALCPLKFPTL----------------QVLALRNAGMETPSGVCSALAA--A 226

Query: 551 KDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNF 610
           +     L+LSHN L       S    + L+ L+L    ++     LP   + +D S N  
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRL 286

Query: 611 TS 612
             
Sbjct: 287 DR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 8e-15
 Identities = 51/240 (21%), Positives = 80/240 (33%), Gaps = 18/240 (7%)

Query: 506 LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLV 565
           +    + S  L     +   + L  L L + +++G  P  L +      N LNL +    
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 566 SLE------QPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDI- 618
           + +      Q +    L  LS+   HS     +   + P  + +D S N       +   
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 619 ---GSFMSLS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDS 673
                F +L      +    + +GV          L  LDLS+N L         +   S
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP-S 253

Query: 674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF 733
           QL  LNL    L             L  LDL+ N+L+   P        +  L L  N F
Sbjct: 254 QLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDR-NPSPD-ELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 7e-13
 Identities = 62/320 (19%), Positives = 99/320 (30%), Gaps = 34/320 (10%)

Query: 620 SFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLN 679
           +F      +S + N L     E      +L  L    +  + +       +    L  L 
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQF-TDIIKSLSLKRLT 74

Query: 680 LRRNNLNGTVSATFPANCS---LRTLDLNGNQLEGMVPKSLANCSV--LEILDLGNNQF- 733
           +R   +   +            L+ L L   ++ G  P  L   +   L IL+L N  + 
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 734 -DDTFPCWVKNASRLHVLILR-SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKW 791
             D +   ++   +  + +L  +     N SC +    +P L  +DL+ N   G      
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLIS 193

Query: 792 LLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDF 851
            L               L+ L  R   +           T  G+   LA        +D 
Sbjct: 194 ALCPLKF--------PTLQVLALRNAGME----------TPSGVCSALAAARVQLQGLDL 235

Query: 852 SRNNFEGPIPEEMGL-LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPA 910
           S N+               L +LNLS   L      L   L     LDLS N L    P 
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLD-RNP- 290

Query: 911 QLASLNFLSVLNLSYNHLVG 930
               L  +  L+L  N  + 
Sbjct: 291 SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 7e-12
 Identities = 58/290 (20%), Positives = 89/290 (30%), Gaps = 24/290 (8%)

Query: 36  WSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNAT 95
           WS + +C   + V+    GR +   L      A +   + +     L+ L +      + 
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 96  EIPSGLG--NLTNLTTLNLSNAGFAGQIPIQVSGMT--RLVTLDLSGMYFVRAPLKLENP 151
            +   L    ++ L  L L N    G  P  +   T   L  L+L  + +      L   
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL--A 141

Query: 152 NLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGP------- 204
            L   L     L+ L +   +      E  +   +L      L LS     G        
Sbjct: 142 ELQQWL--KPGLKVLSIAQAHSLNFSCEQVRVFPAL----STLDLSDNPELGERGLISAL 195

Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLP-TL 263
                  L+ L++    M           A    L  L LS   L  A        P  L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 264 ETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGI-LPDSIKNLKNLS 312
            +L+LS+  L Q           L  L LS         PD +  + NLS
Sbjct: 256 NSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPSPDELPQVGNLS 302

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 9e-11
 Identities = 48/267 (17%), Positives = 76/267 (28%), Gaps = 41/267 (15%)

Query: 629 SFSKNSLTGVIPES---ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNL 685
           +     +   I      +   + L  L L    ++G  P  L+  +   L +LNLR  + 
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133

Query: 686 NGTVSATFP----ANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCW- 740
               +            L+ L +          + +     L  LDL +N          
Sbjct: 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 741 ---VKNASRLHVLILRSNNFFG-NISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLE 796
                    L VL LR+      +  C     +   LQ +DL+ N               
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 797 AMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNF 856
            +                  LNLS       +    KGL  KL       + +D S N  
Sbjct: 254 QL----------------NSLNLSFTG----LKQVPKGLPAKL-------SVLDLSYNRL 286

Query: 857 EGPIPEEMGLLQSLCALNLSHNALTGS 883
           +   P    L   +  L+L  N    S
Sbjct: 287 DR-NPSPDEL-PQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 39/225 (17%), Positives = 67/225 (29%), Gaps = 28/225 (12%)

Query: 723 LEILDLGNNQFDDTFPCW-VKNASRLHVLILRSNNFFGNISC-PRYNVSWPMLQIIDLAS 780
           LE L    +   D      +  +  L  L +R+      I       +    LQ + L +
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLA 840
            + +G  P   L               E        LNL       +       L     
Sbjct: 105 LEVTGTAPPPLL---------------EATGPDLNILNLRNV----SWATRDAWLAELQQ 145

Query: 841 KILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSI-------PSLIGNLRE 893
            +      +  ++ +      E++ +  +L  L+LS N   G         P     L+ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 894 IESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQL 938
           +   +  M   SG   A  A+   L  L+LS+N L       +  
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 64/278 (23%), Positives = 94/278 (33%), Gaps = 75/278 (26%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
              LDLS N L      SFF    L++L LS  + + TIE  A Q L +L  L L+ N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 492 AVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKI 549
             +A    +     L  L      L+++ N  +     L  L+++ N I           
Sbjct: 89  QSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ---------- 137

Query: 550 GKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNN 609
                           S + P   S+LT+L  LDL SN+IQ                   
Sbjct: 138 ----------------SFKLPEYFSNLTNLEHLDLSSNKIQ------------------- 162

Query: 610 FTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLIN 669
              SI         L          +  +             LDLS N ++ + P     
Sbjct: 163 ---SIYC--TDLRVLH--------QMPLLNLS----------LDLSLNPMNFIQPGAFKE 199

Query: 670 MSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGN 707
           +   +L  L L  N L       F    SL+ + L+ N
Sbjct: 200 I---RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 62/261 (23%), Positives = 91/261 (34%), Gaps = 64/261 (24%)

Query: 483 RLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQIS- 539
            LDLS+N L  + GS  +   P L  L L+ C++  I +   +  + L  L L+ N I  
Sbjct: 32  NLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 540 --GEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP 597
                 + L  +       L      L SLE  + I  L +L  L++  N IQ       
Sbjct: 91  LALGAFSGLSSLQ-----KLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQ------- 137

Query: 598 PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN 657
                          S  +    F +L                      TNL  LDLS N
Sbjct: 138 ---------------SFKLP-EYFSNL----------------------TNLEHLDLSSN 159

Query: 658 YLSGMIPTC----LINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMV 713
            +   I       L  M    L  L+L  N +N      F     L+ L L+ NQL+ + 
Sbjct: 160 KIQ-SIYCTDLRVLHQMPLLNLS-LDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVP 216

Query: 714 PKSLANCSVLEILDLGNNQFD 734
                  + L+ + L  N +D
Sbjct: 217 DGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 48/217 (22%), Positives = 78/217 (35%), Gaps = 21/217 (9%)

Query: 161 AELRELYLDGVNISA--PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVI 218
              + L L    +           +  S  P+LQVL LS C +    D +  +L  LS +
Sbjct: 28  FSTKNLDLSFNPLRHLGSY-----SFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81

Query: 219 RLDMNDLYSPVPEFLADFSNLTSLYLSSCGL----HGAFPEKILQLPTLETLDLSYNELL 274
            L  N + S      +  S+L  L      L    +         L TL+ L++++N + 
Sbjct: 82  ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG----HLKTLKELNVAHNLIQ 137

Query: 275 QGSLPDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYL---CNFNGPIPTSMS 330
              LP++  NL +LE L LS+     I    ++ L  +  +   L    N    I     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 331 DLSQLVYLDMSFNHFSG-PIPSLHMFRNLAYLDLSYN 366
              +L  L +  N     P        +L  + L  N
Sbjct: 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 51/247 (20%), Positives = 91/247 (36%), Gaps = 55/247 (22%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMY 140
            ++L+L+FN      + S    +   L  L+LS                 + T++     
Sbjct: 30  TKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSR--------------CEIQTIE----- 68

Query: 141 FVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGIEWCQALSSLVPKLQVLSLSG 198
                         G  Q+L+ L  L L G  I +   G       S L   LQ L    
Sbjct: 69  -------------DGAYQSLSHLSTLILTGNPIQSLALGA-----FSGL-SSLQKLVAVE 109

Query: 199 CFLSGPVDPSLSNLRSLSVIRLDMNDLYS-PVPEFLADFSNLTSLYLSSCGL----HGAF 253
             L+   +  + +L++L  + +  N + S  +PE+ ++ +NL  L LSS  +        
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 254 PEKILQLPTLE-TLDLSYNELLQGSLPD--FHQNLSLETLILSATNFSGILPDSIKNLKN 310
              + Q+P L  +LDLS N +    +    F   + L+ L L       +       L +
Sbjct: 170 -RVLHQMPLLNLSLDLSLNPM--NFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTS 225

Query: 311 LSRVEFY 317
           L ++  +
Sbjct: 226 LQKIWLH 232

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 43/255 (16%), Positives = 83/255 (32%), Gaps = 42/255 (16%)

Query: 631 SKNSLTGV---IPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNG 687
            + +   +   +P       +   LDLS+N L  +      +    +L VL+L R  +  
Sbjct: 15  MELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQT 66

Query: 688 TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF----DDTFPCWVKN 743
                + +   L TL L GN ++ +   + +  S L+ L           +        +
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI----GH 122

Query: 744 ASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803
              L  L + ++N   +   P Y  +   L+ +DL+SNK    +    L           
Sbjct: 123 LKTLKELNV-AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV--------- 171

Query: 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEE 863
                L  +    L+L  +         +  ++    K +     +    N  +      
Sbjct: 172 -----LHQMPLLNLSLDLSLNP------MNFIQPGAFKEIR-LKELALDTNQLKSVPDGI 219

Query: 864 MGLLQSLCALNLSHN 878
              L SL  + L  N
Sbjct: 220 FDRLTSLQKIWLHTN 234

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 81.6 bits (202), Expect = 4e-17
 Identities = 53/304 (17%), Positives = 94/304 (30%), Gaps = 73/304 (24%)

Query: 290 LILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPI 349
            I   T  + + PD    L N  +      +    +     +LS +   +   ++    +
Sbjct: 2   SIQRPTPINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQS-L 56

Query: 350 PSLHMFRNLAYLDLSYNIFTGGISSI-GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQ 408
             +  F NL  L LS+N     IS +   + L  L  + ++ N L               
Sbjct: 57  AGMQFFTNLKELHLSHN----QISDLSPLKDLTKLEELSVNRNRL--------------- 97

Query: 409 HLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVG 468
                          ++   S+ L  L L +N L     L    LKNL+IL + +NK   
Sbjct: 98  -------------KNLNGIPSACLSRLFLDNNELRDTDSLI--HLKNLEILSIRNNKLK- 141

Query: 469 TIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKL 528
              +  +  L  L  LDL  N                         +++    L +  K+
Sbjct: 142 --SIVMLGFLSKLEVLDLHGN-------------------------EITNTGGLTRLKKV 174

Query: 529 YHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQ 588
             +DL+  +   E   +  ++        N   +       PY IS+  S     +    
Sbjct: 175 NWIDLTGQKCVNEPVKYQPEL-----YITNTVKDPDGRWISPYYISNGGSYVDGCVLWEL 229

Query: 589 IQGK 592
               
Sbjct: 230 PVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 50/220 (22%), Positives = 83/220 (37%), Gaps = 24/220 (10%)

Query: 378 EQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASS-SLLDTLD 436
             L N    +L   ++   + Q   EL  VQ+    ++     +  ++     + L  L 
Sbjct: 16  PGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSN----IQSLAGMQFFTNLKELH 69

Query: 437 LSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAG 496
           LS N +    PL   +L  L+ L ++ N+      L+ I     L RL L  N L     
Sbjct: 70  LSHNQISDLSPLK--DLTKLEELSVNRNRLK---NLNGIPSA-CLSRLFLDNNELRDTDS 123

Query: 497 SSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNH 556
                    L  LS+ + KL +I  L   +KL  LDL  N+I+      L ++ K   N 
Sbjct: 124 LIHL---KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEIT-NTGG-LTRLKK--VNW 176

Query: 557 LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPL 596
           ++L+    V+    Y       L + +   +     I P 
Sbjct: 177 IDLTGQKCVNEPVKY----QPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 24/221 (10%)

Query: 515 KLSAIPNLRKQTKLYHLDLSDNQISGEIP-NWLWKIGKDSFNHLNLSHNLLVSLEQPYSI 573
            ++ +            +L    ++  +    L  +      + N  ++ + SL     +
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGV-----QNFNGDNSNIQSLA---GM 59

Query: 574 SDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFS 631
              T+L  L L  NQI   + PL        +  + N   +   +       L +     
Sbjct: 60  QFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL----D 114

Query: 632 KNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA 691
            N L     +S+ +  NL +L +  N L  ++   L  +  S+L VL+L  N +  T + 
Sbjct: 115 NNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFL--SKLEVLDLHGNEI--TNTG 166

Query: 692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ 732
                  +  +DL G +      K      +   +   + +
Sbjct: 167 GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGR 207

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 51/253 (20%), Positives = 87/253 (34%), Gaps = 36/253 (14%)

Query: 64  ESISAG--IDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQI 121
           ESI     I+       L      NL     + T++      L+ +   N  N+      
Sbjct: 1   ESIQRPTPINQVFPDPGLANAVKQNLGKQ--SVTDL-VSQKELSGVQNFNGDNSNIQSLA 57

Query: 122 PIQVSGMTRLVTLDLSGMYFVRAPLKLENP--NLSGLLQNLAELRELYLDGVNISAPGIE 179
            +Q    T L  L LS            N   +LS  L++L +L EL ++   +    + 
Sbjct: 58  GMQ--FFTNLKELHLSH-----------NQISDLSP-LKDLTKLEELSVNRNRLKN--LN 101

Query: 180 WCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNL 239
               + S    L  L L    L      SL +L++L ++ +  N L S V   L   S L
Sbjct: 102 ---GIPSA--CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKL 152

Query: 240 TSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSG 299
             L L    +       + +L  +  +DL+  + +   +  +   L +   +        
Sbjct: 153 EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVK-YQPELYITNTVKDPDGRW- 208

Query: 300 ILPDSIKNLKNLS 312
           I P  I N  +  
Sbjct: 209 ISPYYISNGGSYV 221

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 41/254 (16%), Positives = 87/254 (34%), Gaps = 41/254 (16%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
            +    +I     + + +     L+ L+L+ N    +++ S L +LT L  L+++     
Sbjct: 46  FNGDNSNIQ----SLAGMQFFTNLKELHLSHN--QISDL-SPLKDLTKLEELSVNR---- 94

Query: 119 GQI-PIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL--LQNLAELRELYLDGVNISA 175
            ++  +       L  L L             N  L     L +L  L  L +    + +
Sbjct: 95  NRLKNLNGIPSACLSRLFLD------------NNELRDTDSLIHLKNLEILSIRNNKLKS 142

Query: 176 PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLAD 235
             I     L  L  KL+VL L G  ++      L+ L+ ++ I L      +   ++  +
Sbjct: 143 --IV---MLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPE 194

Query: 236 FSNLTSLYLSSCGLHGAF--PEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
                ++        G +  P  I    +     + +   +      +  +  +  +  +
Sbjct: 195 LYITNTVKD----PDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYI-NVGET 249

Query: 294 ATNFSGILPDSIKN 307
              F G +   IKN
Sbjct: 250 EAIFDGTVTQPIKN 263

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 44/255 (17%), Positives = 87/255 (34%), Gaps = 33/255 (12%)

Query: 420 HVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLR 479
            VTEI +        L      L      +F    +L+ + +S N  +  IE D    L 
Sbjct: 20  KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 480 NLFRLDLS-YNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPNLRKQ--TKLYHLDLS 534
            L  + +   N L  +   +   F  L  L  L +++  +  +P++ K    +   LD+ 
Sbjct: 80  KLHEIRIEKANNLLYINPEA---FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 535 DNQISGEIPNWLWKIGKDSFNH-------LNLSHNLLVSLEQPYSISDLTSLSVLDLHSN 587
           DN         +  I ++SF         L L+ N +  +    + +      +    +N
Sbjct: 137 DN-------INIHTIERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNN 188

Query: 588 QIQGKIPPL----PPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESI 643
            ++ ++P            +D S     S   +      +L    + S  +L  +    +
Sbjct: 189 NLE-ELPNDVFHGASGPVILDISRTRIHS---LPSYGLENLKKLRARSTYNLKKLPT--L 242

Query: 644 CNATNLLVLDLSYNY 658
                L+   L+Y  
Sbjct: 243 EKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 55/284 (19%), Positives = 92/284 (32%), Gaps = 39/284 (13%)

Query: 484 LDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGE 541
                +++  +        P     L     KL  I          L  +++S N +   
Sbjct: 14  FLCQESKVTEIPSD----LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 542 IPNWLWKIGKDSFNHL-NLSH------NLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIP 594
           I         D F++L  L        N L+ +  P +  +L +L  L + +  I+  +P
Sbjct: 70  IEA-------DVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIK-HLP 120

Query: 595 PL----PPNAAYVDYSGNNFTSSIPVDIGSFMSLSI---FFSFSKNSLTGVIPESICNAT 647
            +          +D   N    +I     SF+ LS        +KN +   I  S  N T
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT 177

Query: 648 NLLVLDLS-YNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG 706
            L  L+LS  N L  +        S     +L++ R  ++   S        LR      
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASG--PVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVL 750
            +    +P +L     L    L        F  W +  S LH +
Sbjct: 236 LK---KLP-TLEKLVALMEASLTYPSHCCAFANWRRQISELHPI 275

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 54/267 (20%), Positives = 89/267 (33%), Gaps = 50/267 (18%)

Query: 236 FSNLTSLYLSSCGL----HGAFPEKILQLPTLETLDLSYNELLQGSLPD--FHQNLSLET 289
             N   L      L     GAF         LE +++S N++L+  +    F     L  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFS----GFGDLEKIEISQNDVLE-VIEADVFSNLPKLHE 83

Query: 290 LILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPI 349
           + +   N          NL  ++   F              +L  L YL +S       +
Sbjct: 84  IRIEKAN----------NLLYINPEAF-------------QNLPNLQYLLISNTGIKH-L 119

Query: 350 PSLHMFR--NLAYLDLSYNIFTGGISSIGWEQL-LNLFHVDLSHNNLGGSIPQSLFELPM 406
           P +H         LD+  NI    I    +  L      + L+ N +   I  S F    
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQ 178

Query: 407 VQHLLLADNQFDGHVTEISN---ASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSS 463
           +  L L+DN    ++ E+ N     +S    LD+S   +          LK L+     +
Sbjct: 179 LDELNLSDNN---NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 464 NKFVGTIELDAIQRLRNLFRLDLSYNR 490
            K     +L  +++L  L    L+Y  
Sbjct: 236 LK-----KLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 74.1 bits (182), Expect = 4e-14
 Identities = 39/261 (14%), Positives = 76/261 (29%), Gaps = 44/261 (16%)

Query: 335 LVYLDMSFNHFSGPIPS--LHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNN 392
            + L          I       F +L  +++S N     I +  +  L  L  + +   N
Sbjct: 32  AIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 393 LGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFE 452
               I    F+                        +   L  L +S+  ++    +    
Sbjct: 91  NLLYINPEAFQ------------------------NLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 453 LKNLKILLLSSNKFVGTIELDAIQRLR-NLFRLDLSYNRLAVVAGSSVYCF--PPLLTTL 509
                +L +  N  + TIE ++   L      L L+ N +  +       F    L    
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI---HNSAFNGTQLDELN 183

Query: 510 SLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHL-NLSHNLLVS 566
              +  L  +PN      +    LD+S  +I          +      +L  L      +
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIH--------SLPSYGLENLKKLRARSTYN 235

Query: 567 LEQPYSISDLTSLSVLDLHSN 587
           L++  ++  L +L    L   
Sbjct: 236 LKKLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 38/285 (13%), Positives = 82/285 (28%), Gaps = 50/285 (17%)

Query: 507 TTLSLASCKLSAIP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNH------LNL 559
                   K++ IP +L +      L     ++          I K +F+       + +
Sbjct: 12  RVFLCQESKVTEIPSDLPRNAI--ELRFVLTKLR--------VIQKGAFSGFGDLEKIEI 61

Query: 560 SHNLLVSLEQPYSISDLTSLSVLDL-HSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDI 618
           S N ++ + +    S+L  L  + +  +N +   I P                       
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINP----------------------- 97

Query: 619 GSFMSLS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLG 676
            +F +L    +   S   +  +      ++   ++LD+  N     I          +  
Sbjct: 98  EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 677 VLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736
           +L L +N +    ++ F           + N LE +        S   ILD+   +    
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

Query: 737 FPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN 781
               ++N  +L      +      +           L    L   
Sbjct: 218 PSYGLENLKKLRARSTYNLKKLPTLE------KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 29/232 (12%)

Query: 82  LQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGM 139
              L           I  G      +L  + +S       I   V S + +L  + +   
Sbjct: 32  AIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 140 ---------YFVRAP----LKLENPNLS----GLLQNLAELRELYLDGVNISAPGIEWCQ 182
                     F   P    L + N  +         +  +   L +   NI+   IE   
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-NINIHTIE-RN 147

Query: 183 ALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSL 242
           +   L  +  +L L+   +    + + +  +   +   D N+L     +     S    L
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 243 YLSSCGLHGAFPEKILQ-LPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
            +S   +H + P   L+ L  L        +     LP   + ++L    L+
Sbjct: 208 DISRTRIH-SLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 48/303 (15%), Positives = 97/303 (32%), Gaps = 70/303 (23%)

Query: 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS 690
            ++ +T  IP  +    N + L      L  +            L  + + +N++   + 
Sbjct: 17  QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDVLEVIE 71

Query: 691 A-TFPANCSLRTLDL-NGNQLEGMVPKSLANCSVLEILDLGNNQF----DDTFPCWVKNA 744
           A  F     L  + +   N L  + P++  N   L+ L + N       D        ++
Sbjct: 72  ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI----HS 127

Query: 745 SRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGR 804
            +  +L ++ N                   I  +  N F G   +  +L L         
Sbjct: 128 LQKVLLDIQDNI-----------------NIHTIERNSFVGLSFESVILWL--------- 161

Query: 805 SQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM 864
           +++ ++ +     N +Q             L+       N    +    + F G      
Sbjct: 162 NKNGIQEIHNSAFNGTQ-------------LDELNLSDNNNLEEL--PNDVFHG------ 200

Query: 865 GLLQSLCALNLSHNALTGSIPSLI-GNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL 923
                   L++S   +  S+PS    NL+++ +      NL   +P  L  L  L   +L
Sbjct: 201 --ASGPVILDISRTRIH-SLPSYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASL 253

Query: 924 SYN 926
           +Y 
Sbjct: 254 TYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 33/265 (12%), Positives = 78/265 (29%), Gaps = 30/265 (11%)

Query: 678 LNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF 737
              + + +   + +  P N     L     +L  +   + +    LE +++  N   +  
Sbjct: 14  FLCQESKVT-EIPSDLPRN--AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 738 PCWV-KNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLE 796
              V  N  +LH + +   N    I+ P    + P LQ + +++      LP    ++  
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSL 128

Query: 797 AMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNF 856
             ++ + +    +  ++                 +  GL  +          +  ++N  
Sbjct: 129 QKVLLDIQDNINIHTIERN---------------SFVGLSFES-------VILWLNKNGI 166

Query: 857 EGPIPEEM-GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL 915
           +  I        Q        +N L      +         LD+S   +       L +L
Sbjct: 167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 916 NFLSVLNLSYNHLVGRIPTSTQLQS 940
             L   +      +  +     L  
Sbjct: 226 KKLRARSTYNLKKLPTLEKLVALME 250

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 61/273 (22%), Positives = 107/273 (39%), Gaps = 27/273 (9%)

Query: 349 IPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQ 408
           I S   F      +L     T    ++   +L ++  +  +++++  S+ Q +  LP V 
Sbjct: 17  IFSDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVT 71

Query: 409 HLLLADNQFDGHVTEISNASS-SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFV 467
            L L  N+    +T+I   ++   L  L L +N ++    L   +LK LK L L  N   
Sbjct: 72  KLFLNGNK----LTDIKPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGI- 124

Query: 468 GTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTK 527
              +++ +  L  L  L L  N++  +   S       L TLSL   ++S I  L   TK
Sbjct: 125 --SDINGLVHLPQLESLYLGNNKITDITVLS---RLTKLDTLSLEDNQISDIVPLAGLTK 179

Query: 528 LYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSN 587
           L +L LS N IS ++   L  +     + L L     ++ +     S+L   + +     
Sbjct: 180 LQNLYLSKNHIS-DLRA-LAGLKN--LDVLELFSQECLN-KPINHQSNLVVPNTV----K 230

Query: 588 QIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGS 620
              G +      +   DY   N    +P     
Sbjct: 231 NTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.2 bits (193), Expect = 9e-16
 Identities = 40/258 (15%), Positives = 96/258 (37%), Gaps = 27/258 (10%)

Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNL 563
           PL +        +  I +     +    +L    ++  +     +   +S + +  +++ 
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT----QNELNSIDQIIANNSD 57

Query: 564 LVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSIPVDIGSF 621
           + S++    I  L +++ L L+ N++   I PL    N  ++    N        D+ S 
Sbjct: 58  IKSVQ---GIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVK-----DLSSL 108

Query: 622 MSLS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLN 679
             L      S   N ++ +    + +   L  L L  N ++ +    L  +  ++L  L+
Sbjct: 109 KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRL--TKLDTLS 162

Query: 680 LRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPC 739
           L  N +  +          L+ L L+ N +  +  ++LA    L++L+L + +  +    
Sbjct: 163 LEDNQI--SDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 218

Query: 740 WVKNASRLHVLILRSNNF 757
              N    + +     + 
Sbjct: 219 HQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 55/276 (19%), Positives = 97/276 (35%), Gaps = 35/276 (12%)

Query: 70  IDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMT 129
           I    S  +       NL     + T+       L ++  +  +N+       IQ   + 
Sbjct: 14  IKQIFSDDAFAETIKDNLKKK--SVTDA-VTQNELNSIDQIIANNSDIKSVQGIQ--YLP 68

Query: 130 RLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVP 189
            +  L L+G          +  ++   L NL  L  L+LD   +         +L  L  
Sbjct: 69  NVTKLFLNGN---------KLTDIKP-LANLKNLGWLFLDENKVKD-----LSSLKDL-K 112

Query: 190 KLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGL 249
           KL+ LSL    +S      L +L  L  + L  N +       L+  + L +L L    +
Sbjct: 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI 168

Query: 250 HGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLK 309
               P  +  L  L+ L LS N +    L       +L+ L L +        +   NL 
Sbjct: 169 SDIVP--LAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLV 224

Query: 310 NLSRVEFYLCNFNGPI--PTSMSDLSQLVYLDMSFN 343
             + V+    N +G +  P  +SD       ++ ++
Sbjct: 225 VPNTVK----NTDGSLVTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 37/257 (14%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
            +L ++S++    ++ +   L  +  +    +  +   +  G+  L N+T L L+     
Sbjct: 29  DNLKKKSVT----DAVTQNELNSIDQIIANNS--DIKSV-QGIQYLPNVTKLFLNGNKLT 81

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENP--NLSGLLQNLAELRELYLDGVNISAP 176
              P+  + +  L  L L             N   +LS  L++L +L+ L L+   IS  
Sbjct: 82  DIKPL--ANLKNLGWLFLDE-----------NKVKDLSS-LKDLKKLKSLSLEHNGISD- 126

Query: 177 GIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF 236
            I     L  L P+L+ L L    ++      LS L  L  + L+ N +   VP  LA  
Sbjct: 127 -IN---GLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 177

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
           + L +LYLS   +       +  L  L+ L+L   E L   +      +   T+  +  +
Sbjct: 178 TKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 297 FSGILPDSIKNLKNLSR 313
              + P+ I +  +  +
Sbjct: 236 L--VTPEIISDDGDYEK 250

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 51/290 (17%), Positives = 93/290 (32%), Gaps = 71/290 (24%)

Query: 641 ESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANC-SL 699
            S       +  +L    ++  +      ++   +  +    +++    S        ++
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELN--SIDQIIANNSDIK---SVQGIQYLPNV 70

Query: 700 RTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFG 759
             L LNGN+L  + P  LAN   L  L L  N+  D     +K+  +L  L L  N    
Sbjct: 71  TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNG--- 123

Query: 760 NISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNL 819
            IS     V  P L+ + L +NK         + ++  +        S L  L    L+L
Sbjct: 124 -ISDINGLVHLPQLESLYLGNNK---------ITDITVL--------SRLTKLDT--LSL 163

Query: 820 SQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNA 879
                                   N  + I                 L  L  L LS N 
Sbjct: 164 ED----------------------NQISDIVPLAG------------LTKLQNLYLSKNH 189

Query: 880 LTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV 929
           ++  + +L   L+ ++ L+L             ++L   + +  +   LV
Sbjct: 190 IS-DLRAL-AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.4 bits (196), Expect = 3e-16
 Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 26/169 (15%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
              L LS+N L      +      L  L L   +     +L     L  L  LDLS+N+L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHNQL 89

Query: 492 AVVAGSSVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLW 547
             +          L  LT L ++  +L+++P   LR   +L  L L  N++   +P    
Sbjct: 90  QSLPLL----GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP--- 141

Query: 548 KIGKDSFN------HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
                          L+L++N L  L     ++ L +L  L L  N + 
Sbjct: 142 ----GLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 53/258 (20%), Positives = 81/258 (31%), Gaps = 63/258 (24%)

Query: 480 NLFRLDLSYNRLAVV-AGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDN 536
           +   ++     L  +         P   T L L+   L       L   T+L  L+L   
Sbjct: 11  SHLEVNCDKRNLTALPPD-----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 537 QISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPL 596
           +++ ++              L+LSHN L SL  P     L +L+VLD+  N++   +P  
Sbjct: 66  ELT-KLQVDG---TLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLT-SLPL- 117

Query: 597 PPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSY 656
                                 G+   L                        L  L L  
Sbjct: 118 ----------------------GALRGL----------------------GELQELYLKG 133

Query: 657 NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKS 716
           N L  + P  L      +L  L+L  NNL    +       +L TL L  N L   +PK 
Sbjct: 134 NELKTLPPGLLTPTP--KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 717 LANCSVLEILDLGNNQFD 734
                +L    L  N + 
Sbjct: 191 FFGSHLLPFAFLHGNPWL 208

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 56/234 (23%), Positives = 78/234 (33%), Gaps = 44/234 (18%)

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
           ++   +      L  A P  +        L LS N L   SL        L  L L    
Sbjct: 10  ASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFNG--PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHM 354
            + +  D    L  L  ++    + N    +P     L  L  LD+SFN  +        
Sbjct: 67  LTKLQVDG--TLPVLGTLD---LSHNQLQSLPLLGQTLPALTVLDVSFNRLT-------- 113

Query: 355 FRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLA 413
                   L      G         L  L  + L  N L  ++P  L    P ++ L LA
Sbjct: 114 -------SLPLGALRG---------LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA 156

Query: 414 DNQFDGHVTEIS-NASSSL--LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSN 464
           +N      TE+     + L  LDTL L +N+L   IP  FF    L    L  N
Sbjct: 157 NNNL----TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 42/185 (22%), Positives = 67/185 (36%), Gaps = 8/185 (4%)

Query: 236 FSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSAT 295
             + T L+LS   L+      ++    L  L+L   EL    L        L TL LS  
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHN 87

Query: 296 NFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS--LH 353
                LP   + L  L+ ++            ++  L +L  L +  N     +P   L 
Sbjct: 88  QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLT 145

Query: 354 MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLA 413
               L  L L+ N  T  + +     L NL  + L  N+L  +IP+  F   ++    L 
Sbjct: 146 PTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203

Query: 414 DNQFD 418
            N + 
Sbjct: 204 GNPWL 208

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 23/190 (12%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           L LSE  +     + ++L     L  LNL       T++    G L  L TL+LS+    
Sbjct: 36  LHLSENLLYT--FSLATLMPYTRLTQLNLDRA--ELTKLQVD-GTLPVLGTLDLSHNQLQ 90

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--P 176
             +P+    +  L  LD+S       P         G L+ L EL+ELYL G  +    P
Sbjct: 91  -SLPLLGQTLPALTVLDVSFNRLTSLP--------LGALRGLGELQELYLKGNELKTLPP 141

Query: 177 GIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF 236
           G      L+   PKL+ LSL+   L+      L+ L +L  + L  N LY+ +P+     
Sbjct: 142 G-----LLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGS 194

Query: 237 SNLTSLYLSS 246
             L   +L  
Sbjct: 195 HLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 32/162 (19%)

Query: 572 SISDLTSLSVLDLHSNQIQGKIPP-LPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSF 630
            +S + S   ++     +   +PP LP +   +  S N   +       + M        
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSL---ATLMPY------ 54

Query: 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS 690
                           T L  L+L    L+  +     + +   LG L+L  N L  ++ 
Sbjct: 55  ----------------TRLTQLNLDRAELT-KLQV---DGTLPVLGTLDLSHNQLQ-SLP 93

Query: 691 ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ 732
                  +L  LD++ N+L  +   +L     L+ L L  N+
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQL-ASLNFLSVLNLSY 925
           L  L  L+LSHN L  S+P L   L  +  LD+S N L+ ++P      L  L  L L  
Sbjct: 76  LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133

Query: 926 NHL 928
           N L
Sbjct: 134 NEL 136

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.8 bits (187), Expect = 9e-16
 Identities = 37/254 (14%), Positives = 76/254 (29%), Gaps = 61/254 (24%)

Query: 288 ETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSG 347
           E   L A+  +  +PDS    K            +     + + ++ L Y+ ++  + + 
Sbjct: 4   EQTGLKASQDNVNIPDS--TFKAYLNGLL---GQSSTANITEAQMNSLTYITLANINVTD 58

Query: 348 PIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMV 407
            +  +    N+  L ++    T   + I    L NL  + +   ++      +L  L   
Sbjct: 59  -LTGIEYAHNIKDLTINNIHATN-YNPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTS- 113

Query: 408 QHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFV 467
                                   L  LD+S +  +  I      L  +  + LS N  +
Sbjct: 114 ------------------------LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 468 GTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTK 527
             I    ++ L  L  L++ ++ +                           I +     K
Sbjct: 150 TDIM--PLKTLPELKSLNIQFDGVH----------------------DYRGIEDF---PK 182

Query: 528 LYHLDLSDNQISGE 541
           L  L      I G+
Sbjct: 183 LNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 27/163 (16%), Positives = 63/163 (38%), Gaps = 9/163 (5%)

Query: 234 ADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
           A  ++LT + L++  +       I     ++ L ++       +        +LE L + 
Sbjct: 41  AQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIM 96

Query: 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLH 353
             + +     ++  L +L+ ++      +  I T ++ L ++  +D+S+N     I  L 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 354 MFRNLAYLDLSYNIFTGGISSI-GWEQLLNLFHVDLSHNNLGG 395
               L  L++ ++    G+    G E    L  +      +GG
Sbjct: 157 TLPELKSLNIQFD----GVHDYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 4e-13
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 26/215 (12%)

Query: 62  SEESISAGIDNSSSLFSLKYLQSL-NLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQ 120
           + E         +        ++  N      +   I      + +LT + L+N      
Sbjct: 2   AAEQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDL 59

Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL--LQNLAELRELYLDGVNISAPGI 178
             I+      +  L ++            N + +    +  L+ L  L + G ++++  I
Sbjct: 60  TGIE--YAHNIKDLTIN------------NIHATNYNPISGLSNLERLRIMGKDVTSDKI 105

Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSN 238
                LS L   L +L +S       +   ++ L  ++ I L  N   +     L     
Sbjct: 106 P---NLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTLPE 160

Query: 239 LTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL 273
           L SL +   G+H      I   P L  L      +
Sbjct: 161 LKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 21/168 (12%), Positives = 58/168 (34%), Gaps = 15/168 (8%)

Query: 572 SISDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSIPVDIGSFMSLS--IF 627
           + + + SL+ + L +  +   +  +    N   +  +  + T     +      LS    
Sbjct: 39  TEAQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHAT-----NYNPISGLSNLER 92

Query: 628 FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNG 687
                  +T     ++   T+L +LD+S++     I T +  +   ++  ++L  N    
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP--KVNSIDLSYNGAIT 150

Query: 688 TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD 735
            +         L++L++  + +       + +   L  L   +     
Sbjct: 151 DIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 13/154 (8%)

Query: 159 NLAELRELYLDGVNIS-APGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSV 217
            +  L  + L  +N++   GIE+          ++ L+++    +      +S L +L  
Sbjct: 42  QMNSLTYITLANINVTDLTGIEYA-------HNIKDLTINNIHATNY--NPISGLSNLER 92

Query: 218 IRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGS 277
           +R+   D+ S     L+  ++LT L +S      +   KI  LP + ++DLSYN  +   
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-D 151

Query: 278 LPDFHQNLSLETLILSATNFSGILPDSIKNLKNL 311
           +        L++L +            I++   L
Sbjct: 152 IMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKL 183

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 14/187 (7%)

Query: 433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
           +   L  +     IP S    K     LL  +      E      + +L  + L+   + 
Sbjct: 4   EQTGLKASQDNVNIPDS--TFKAYLNGLLGQSSTANITEAQ----MNSLTYITLANINVT 57

Query: 493 VVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKD 552
            + G   Y     +  L++ +   +    +   + L  L +    ++ +    L  +   
Sbjct: 58  DLTGIE-YA--HNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL--T 112

Query: 553 SFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNF 610
           S   L++SH+          I+ L  ++ +DL  N     I PL   P    ++   +  
Sbjct: 113 SLTLLDISHSAH-DDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171

Query: 611 TSSIPVD 617
                ++
Sbjct: 172 HDYRGIE 178

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 24/142 (16%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           L ++    +    N + +  L  L+ L +       ++    L  LT+LT L++S++   
Sbjct: 71  LTINNIHAT----NYNPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLDISHSAHD 125

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL--LQNLAELRELYLDGVNISAP 176
             I  +++ + ++ ++DLS            N  ++ +  L+ L EL+ L +    +   
Sbjct: 126 DSILTKINTLPKVNSIDLSY-----------NGAITDIMPLKTLPELKSLNIQFDGVH-- 172

Query: 177 GIEWCQALSSLVPKLQVLSLSG 198
                  +    PKL  L    
Sbjct: 173 DYR---GIEDF-PKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 847 TSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG 906
             +     +        +  L SL  L++SH+A   SI + I  L ++ S+DLS N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 907 TIPAQLASLNFLSVLNLSYNHL 928
            I   L +L  L  LN+ ++ +
Sbjct: 151 DIMP-LKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 17/152 (11%), Positives = 52/152 (34%), Gaps = 9/152 (5%)

Query: 633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSAT 692
              +     +     +L  + L+   ++ +    +       +  L +   +   T    
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAH--NIKDLTINNIHA--TNYNP 83

Query: 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLIL 752
                +L  L + G  +      +L+  + L +LD+ ++  DD+    +    +++ + L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 753 RSNNFFGNISCPRYNVSWPMLQIIDLASNKFS 784
             N    +I   +       L+ +++  +   
Sbjct: 144 SYNGAITDIMPLKTLPE---LKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 847 TSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG 906
           T +D S +  +  I  ++  L  + +++LS+N     I  L   L E++SL++  + +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHD 173

Query: 907 TIPAQLASLNFLSVLNLSYNHL 928
                +     L+ L      +
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTI 193

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 63/350 (18%), Positives = 100/350 (28%), Gaps = 84/350 (24%)

Query: 432 LDTLDLSDNNL--EGPIPLSFF--ELKNLKILLLSSNKF--VGTIEL-DAIQRLRNLFRL 484
           ++   L  + +  E    +     E  ++K ++LS N         L + I   ++L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 485 DLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPN 544
           + S        G      P  L  L  A         L K  KL+ + LSDN        
Sbjct: 66  EFSDIFT----GRVKDEIPEALRLLLQA---------LLKCPKLHTVRLSDNAFGPTAQE 112

Query: 545 WLWKIGKDSFN--HLNLSHN------------LLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
            L           HL L +N             L  L       +   L  +    N++ 
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL- 171

Query: 591 GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLT-----GVIPESICN 645
                            N           S   L       +N +       ++ E +  
Sbjct: 172 ----------------ENGSMKEWAKTFQSHRLLH-TVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 646 ATNLLVLDLSYN--------YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA------ 691
              L VLDL  N         L+  + +         L  L L    L     A      
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSW------PNLRELGLNDCLL-SARGAAAVVDA 267

Query: 692 -TFPANCSLRTLDLNGNQLEGMVPKSLA-----NCSVLEILDLGNNQFDD 735
            +   N  L+TL L  N++E    ++L          L  L+L  N+F +
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 62/327 (18%), Positives = 113/327 (34%), Gaps = 64/327 (19%)

Query: 262 TLETLDLSYNEL----LQGSLPDFHQNLSLETLILSATNFSG----ILPDSIKNLKNLSR 313
           ++E   L  + +     +       ++ S++ ++LS           L ++I + K+L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 314 VEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTG-GI 372
            EF               L  L+              +L     L  + LS N F     
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLL-------------QALLKCPKLHTVRLSDNAFGPTAQ 111

Query: 373 SSIGWEQLL----NLFHVDLSHNNLG-------------GSIPQSLFELPMVQHLLLADN 415
             +     L     L H+ L +N LG              ++ +     P ++ ++   N
Sbjct: 112 EPLI--DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 416 QF-DGHVTEISNA--SSSLLDTLDLSDNNL-----EGPIPLSFFELKNLKILLLSSNKF- 466
           +  +G + E +    S  LL T+ +  N +     E  +       + LK+L L  N F 
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 467 -VGTIEL-DAIQRLRNLFRLDLSYNRL-----AVVAGSSVYCFPPLLTTLSLASCKLS-- 517
            +G+  L  A++   NL  L L+   L     A V  +        L TL L   ++   
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

Query: 518 ---AIPNL--RKQTKLYHLDLSDNQIS 539
               +  +   K   L  L+L+ N+ S
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 47/321 (14%), Positives = 94/321 (29%), Gaps = 66/321 (20%)

Query: 329 MSDLSQLVYLDMSFNHFSGP-----IPSLHMFRNLAYLDLSYNIFT-GGISSIGW--EQL 380
           M+  S +    +  +  +          L    ++  + LS N         +       
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 381 LNLFHVDLSHNNLG----------GSIPQSLFELPMVQHLLLADNQF-DGHVTEISNA-- 427
            +L   + S    G            + Q+L + P +  + L+DN F       + +   
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 428 SSSLLDTLDLSDNNL-------------EGPIPLSFFELKNLKILLLSSNKF--VGTIEL 472
             + L+ L L +N L             E  +         L+ ++   N+       E 
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 473 -DAIQRLRNLFRLDLSYNRL----AVVAGSSVYCFPPLLTTLSLASCKLSAI------PN 521
               Q  R L  + +  N +              +   L  L L     + +        
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 522 LRKQTKLYHLDLSDNQISGE----IPNWLWKIGKDSFNHLNLSHN---------LLVSLE 568
           L+    L  L L+D  +S      + +   K+       L L +N         L   ++
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299

Query: 569 QPYSISDLTSLSVLDLHSNQI 589
           +      +  L  L+L+ N+ 
Sbjct: 300 EK-----MPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 70/350 (20%), Positives = 122/350 (34%), Gaps = 86/350 (24%)

Query: 153 LSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLV---PKLQVLSLSGCFLSGPVD--- 206
           +  +L     ++E+ L G  I   G E  + LS  +     L++   S  F     D   
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTI---GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP 80

Query: 207 -------PSLSNLRSLSVIRLDMNDLY----SPVPEFLADFSNLTSLYLSSCGL------ 249
                   +L     L  +RL  N        P+ +FL+  + L  LYL + GL      
Sbjct: 81  EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140

Query: 250 -------HGAFPEKILQLPTLETLDLSYNELLQGSLPD----FHQNLSLETLILSATNFS 298
                    A  +K    P L ++    N L  GS+ +    F  +  L T+ +      
Sbjct: 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN--- 197

Query: 299 GILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPI------PSL 352
           GI P+ I++L                +   ++   +L  LD+  N F   +       +L
Sbjct: 198 GIRPEGIEHL----------------LLEGLAYCQELKVLDLQDNTF-THLGSSALAIAL 240

Query: 353 HMFRNLAYLDLSYNIFTGGISSIGWEQL---------LNLFHVDLSHNNLGG----SIPQ 399
             + NL  L L+       +S+ G   +         + L  + L +N +      ++  
Sbjct: 241 KSWPNLRELGLNDC----LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296

Query: 400 SLFE-LPMVQHLLLADNQF---DGHVTEISNA--SSSLLDTLDLSDNNLE 443
            + E +P +  L L  N+F   D  V EI     +    +  +L D    
Sbjct: 297 VIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEEL 346

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 64/434 (14%), Positives = 114/434 (26%), Gaps = 144/434 (33%)

Query: 356 RNLAYLDLSYNIFTGGISSIGWEQLL-------NLFHVDLSHNNLGG----SIPQSLFEL 404
            ++    L  +     I++   + +        ++  + LS N +G      + +++   
Sbjct: 4   FSIEGKSLKLD----AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 405 PMVQHLLLADNQFDGHVTEISNASSSL---------LDTLDLSDNNL--EGPIPLSFF-- 451
             ++    +D        EI  A   L         L T+ LSDN        PL  F  
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 452 ELKNLKILLLSSNKF------------VGTIELDAIQRLRNLFRLDLSYNRL---AVVAG 496
           +   L+ L L +N                       +    L  +    NRL   ++   
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 497 SSVYCFPPLLTTLSLASCKL------SAIPN-LRKQTKLYHLDLSDNQISGEIPNWLWKI 549
           +  +    LL T+ +    +        +   L    +L  LDL DN             
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF----------- 228

Query: 550 GKDSFNHL--NLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSG 607
                + L   L                  +L  L L+   +                  
Sbjct: 229 THLGSSALAIALKSW--------------PNLRELGLNDCLLS----------------- 257

Query: 608 NNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCL 667
                      G+  ++   FS  +N               L  L L YN +        
Sbjct: 258 ---------ARGA-AAVVDAFSKLEN-------------IGLQTLRLQYNEI-------- 286

Query: 668 INMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQL--EGMVPKSLA----NCS 721
                    V  L         +        L  L+LNGN+   E  V   +        
Sbjct: 287 -----ELDAVRTL--------KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333

Query: 722 VLEILDLGNNQFDD 735
             E+ +L + +   
Sbjct: 334 RGELDELDDMEELT 347

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 49/238 (20%), Positives = 80/238 (33%), Gaps = 41/238 (17%)

Query: 73  SSSLFSLKYLQSLNLAFNMFN---------ATEIPSGLGNLTNLTTLNLS-NA-GFAGQI 121
           S ++ S K L+    +                 +   L     L T+ LS NA G   Q 
Sbjct: 53  SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112

Query: 122 PI--QVSGMTRLVTLDLS--------GMYFVRAPLKLENPNLSGLLQNLAELRELYLDGV 171
           P+   +S  T L  L L         G    RA   L+   ++   +N   LR +     
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA---LQELAVNKKAKNAPPLRSIICGRN 169

Query: 172 NISAPGIE-WCQALSSLVPKLQVLSLSGCFL-----SGPVDPSLSNLRSLSVIRLDMNDL 225
            +    ++ W +   S    L  + +    +        +   L+  + L V+ L  N  
Sbjct: 170 RLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 226 Y----SPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQL------PTLETLDLSYNEL 273
                S +   L  + NL  L L+ C L       ++          L+TL L YNE+
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 43/268 (16%), Positives = 76/268 (28%), Gaps = 47/268 (17%)

Query: 695 ANCSLRTLDLNGNQL--EGMVP--KSLANCSVLEILDLGNNQFDDTFPCWV----KNASR 746
           A  S+    L  + +  E        L     ++ + L  N        W+     +   
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 747 LHVLILRSNNFFGNISCPRYNVSWPM---------LQIIDLASNKFSGRLPQKWLLNLEA 797
           L +    S+ F G +          +         L  + L+ N F     +     L  
Sbjct: 62  LEIAEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE----PLID 116

Query: 798 MMVDEGRSQSELKHLQYRFLNLSQA---YYQDAITVTIKGLEMKLAKILNIFTSIDFSRN 854
            +       + L+HL      L          A+       + K A  L    SI   RN
Sbjct: 117 FL----SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL---RSIICGRN 169

Query: 855 NFEGP----IPEEMGLLQSLCALNLSHNALT-----GSIPSLIGNLREIESLDLSMNNLS 905
             E        +     + L  + +  N +        +   +   +E++ LDL  N   
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF- 228

Query: 906 GTIPAQ-----LASLNFLSVLNLSYNHL 928
             + +      L S   L  L L+   L
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLL 256

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
              LDL  N L      +F  L  L++L L+ NK   T+     + L+NL  L ++ N+L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 492 AVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKI 549
             +    V+     L  L L   +L ++P       TKL +L L  N++   +P      
Sbjct: 98  QALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK----- 150

Query: 550 GKDSFNHL------NLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
               F+ L       L +N L  +    +   LT L  L L +NQ++
Sbjct: 151 --GVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 65/267 (24%), Positives = 97/267 (36%), Gaps = 77/267 (28%)

Query: 480 NLFRLDLSYNRLAVV-AGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDN 536
           N   +D S  +L  + +       P     L L S KLS++P+    + TKL  L L+DN
Sbjct: 17  NKNSVDCSSKKLTAIPSN-----IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71

Query: 537 QISGEIPNWLWKIGKDSFNHL------NLSHNLLVSLEQPYSISD-LTSLSVLDLHSNQI 589
           ++   +P          F  L       ++ N L +L  P  + D L +L+ L L  NQ+
Sbjct: 72  KLQ-TLPA-------GIFKELKNLETLWVTDNKLQAL--PIGVFDQLVNLAELRLDRNQL 121

Query: 590 QGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNL 649
           +  +PP                         F SL                      T L
Sbjct: 122 K-SLPP-----------------------RVFDSL----------------------TKL 135

Query: 650 LVLDLSYNYLSGMIPTCLINMSDS--QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGN 707
             L L YN L   +P     + D    L  L L  N L       F     L+TL L+ N
Sbjct: 136 TYLSLGYNELQ-SLPK---GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

Query: 708 QLEGMVPKSLANCSVLEILDLGNNQFD 734
           QL+ +   +  +   L++L L  N +D
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQENPWD 218

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 30/178 (16%)

Query: 326 PTSMSDLSQLVYLDMSFNHFSGPIPS--LHMFRNLAYLDLSYNIFTGGISSIG---WEQL 380
             +   L++L  L ++ N     +P+      +NL  L ++ N     + ++    ++QL
Sbjct: 54  SKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN----KLQALPIGVFDQL 108

Query: 381 LNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQ--------FDGHVTEISNASSSL 431
           +NL  + L  N L  S+P  +F+ L  + +L L  N+        FD   +         
Sbjct: 109 VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS--------- 158

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYN 489
           L  L L +N L+     +F +L  LK L L +N+    +   A   L  L  L L  N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 39/210 (18%)

Query: 262 TLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNF 321
             + LDL  N+L       FH+   L  L L+      +     K LKNL  +       
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW---VTD 94

Query: 322 NG--PIPTSMSD-LSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWE 378
           N    +P  + D L  L  L +  N                   L   +F          
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLK---------------SLPPRVFDS-------- 131

Query: 379 QLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEISN---ASSSLLDT 434
            L  L ++ L +N L  S+P+ +F+ L  ++ L L +NQ    +  +        + L T
Sbjct: 132 -LTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQ----LKRVPEGAFDKLTELKT 185

Query: 435 LDLSDNNLEGPIPLSFFELKNLKILLLSSN 464
           L L +N L+     +F  L+ LK+L L  N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 38/173 (21%), Positives = 57/173 (32%), Gaps = 21/173 (12%)

Query: 78  SLKYLQSLNLAFNMFNATEIPSGL-GNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLD 135
            L  L+ L L  N      +P+G+   L NL TL +++      +PI V   +  L  L 
Sbjct: 59  RLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115

Query: 136 LSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGIEWCQALSSLVPKLQV 193
           L        P          +  +L +L  L L    + +   G         L   L+ 
Sbjct: 116 LDRNQLKSLP--------PRVFDSLTKLTYLSLGYNELQSLPKG-----VFDKLT-SLKE 161

Query: 194 LSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSS 246
           L L    L    + +   L  L  ++LD N L             L  L L  
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 40/162 (24%), Positives = 59/162 (36%), Gaps = 9/162 (5%)

Query: 210 SNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKIL-QLPTLETLDL 268
             L  L ++ L+ N L +       +  NL +L+++   L  A P  +  QL  L  L L
Sbjct: 58  HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 269 SYNELLQGSLPD--FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIP 326
             N+L   SLP   F     L  L L       +       L +L  +  Y  N    +P
Sbjct: 117 DRNQL--KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY-NNQLKRVP 173

Query: 327 TSMSD-LSQLVYLDMSFNHF-SGPIPSLHMFRNLAYLDLSYN 366
               D L++L  L +  N     P  +      L  L L  N
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 39/237 (16%), Positives = 85/237 (35%), Gaps = 42/237 (17%)

Query: 382 NLFHVDLSHNNLGG--SIPQSLFELPMVQHLLLADNQFDGHVTEI-SNASSSL--LDTLD 436
                 ++  ++    S+P S       Q L L +         I S+A S+L  +  + 
Sbjct: 12  QEEDFRVTCKDIQRIPSLPPST------QTLKLIETHL----RTIPSHAFSNLPNISRIY 61

Query: 437 LSDNNLEGPIPL-SFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVA 495
           +S +     +   SF+ L  +  + + + + +  I+ DA++ L  L  L +    L +  
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121

Query: 496 GSSVYCFPPLLTTLSLAS-CKLSAIP-----NLRKQTKLYHLDLSDNQISGEIPNWLWKI 549
             +      +   L +     +++IP      L  +     L L +N  +         +
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNGFT--------SV 171

Query: 550 GKDSFN-----HLNLSHNLLVSLEQPYSISDLTS-LSVLDLHSNQIQGKIPPLPPNA 600
              +FN      + L+ N  +++    +   + S  S+LD+    +      LP   
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA----LPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 40/215 (18%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 286 SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSM-SDLSQLVYLDMSFNH 344
           S +TL L  T+   I   +  NL N+SR+   +      + +    +LS++ ++++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 345 FSGPIPSLHMFR---NLAYLDLSYNIFTGGISSI----GWEQLLNLFHVDLSHNNLGGSI 397
               I      +    L +L +       G+               F ++++ N    SI
Sbjct: 92  NLTYIDP-DALKELPLLKFLGIFNT----GLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 398 PQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLK 457
           P + F     Q L                   +   TL L +N     +    F    L 
Sbjct: 147 PVNAF-----QGL------------------CNETLTLKLYNNGFTS-VQGYAFNGTKLD 182

Query: 458 ILLLSSNKFVGTIELDAIQRLRN-LFRLDLSYNRL 491
            + L+ NK++  I+ DA   + +    LD+S   +
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 35/249 (14%), Positives = 79/249 (31%), Gaps = 62/249 (24%)

Query: 421 VTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRN 480
           +  I +   S   TL L + +L      +F  L N+  + +S +  +  +E  +   L  
Sbjct: 23  IQRIPSLPPST-QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81

Query: 481 LFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQI 538
           +  +++   R                         L+ I    L++   L  L + +  +
Sbjct: 82  VTHIEIRNTR------------------------NLTYIDPDALKELPLLKFLGIFNTGL 117

Query: 539 SGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSV-LDLHSNQIQGKIPPLP 597
               P+       D F  L ++ N  ++     +   L + ++ L L++N        + 
Sbjct: 118 K-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS----VQ 172

Query: 598 PNA------AYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLV 651
             A        V  + N + + I     +F  +                      +   +
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDK--DAFGGVY---------------------SGPSL 209

Query: 652 LDLSYNYLS 660
           LD+S   ++
Sbjct: 210 LDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 40/237 (16%), Positives = 73/237 (30%), Gaps = 47/237 (19%)

Query: 237 SNLTSLYLSSCGLH----GAFPEKILQLPTLETLDLSYNELLQGSLPD--FHQNLSLETL 290
            +  +L L    L      AF      LP +  + +S +  LQ  L    F+    +  +
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFS----NLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHI 85

Query: 291 ILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP 350
            +  T           NL  +                   +L  L +L +         P
Sbjct: 86  EIRNTR----------NLTYIDPDAL-------------KELPLLKFLGIFNTGLKM-FP 121

Query: 351 SLHMFRNLA---YLDLSYNIFTGGISSIGWEQLLN-LFHVDLSHNNLGGSIPQSLFELPM 406
            L    +      L+++ N +   I    ++ L N    + L +N    S+    F    
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTK 180

Query: 407 VQHLLLADNQFDGHVTEISNAS----SSLLDTLDLSDNNLEGPIPLSFFELKNLKIL 459
           +  + L  N+   ++T I   +     S    LD+S  ++          LK L   
Sbjct: 181 LDAVYLNKNK---YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 35/265 (13%), Positives = 80/265 (30%), Gaps = 67/265 (25%)

Query: 673 SQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ 732
            Q     +   ++      + P +   +TL L    L  +   + +N   +  + +  + 
Sbjct: 11  HQEEDFRVTCKDI--QRIPSLPPS--TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 733 F-----DDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRL 787
                   +F     N S++  + +R+                    +  +  +     L
Sbjct: 67  TLQQLESHSF----YNLSKVTHIEIRNTR-----------------NLTYIDPDALKE-L 104

Query: 788 PQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFT 847
           P    L +           + LK                         ++      +IF 
Sbjct: 105 PLLKFLGI---------FNTGLKMFP----------------------DLTKVYSTDIFF 133

Query: 848 SIDFSRNNFEGPIPEEM--GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS 905
            ++ + N +   IP     GL      L L +N  T S+     N  +++++ L+ N   
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL 192

Query: 906 GTIPAQ-LASL-NFLSVLNLSYNHL 928
             I       + +  S+L++S   +
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 37/246 (15%), Positives = 72/246 (29%), Gaps = 36/246 (14%)

Query: 41  DCCTWSGVDCDEAG---------RVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNM 91
           +C                         L L E  +   I  S +  +L  +  + ++ ++
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRT-I-PSHAFSNLPNISRIYVSIDV 66

Query: 92  FNATEIPSGL-GNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGMYFVRAPLKLE 149
               ++ S    NL+ +T + + N      I       +  L  L +           L+
Sbjct: 67  -TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-------GLK 118

Query: 150 NPNLSGLLQNLAELRELYLDGVN----ISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPV 205
                  + +      L +        I         A   L  +   L L     +  V
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPV------NAFQGLCNETLTLKLYNNGFTS-V 171

Query: 206 DPSLSNLRSLSVIRLDMNDLYSPVPE--FLADFSNLTSLYLSSCGLHGAFPEKILQ-LPT 262
                N   L  + L+ N   + + +  F   +S  + L +S   +  A P K L+ L  
Sbjct: 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE 230

Query: 263 LETLDL 268
           L   + 
Sbjct: 231 LIARNT 236

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 74.5 bits (183), Expect = 7e-14
 Identities = 74/510 (14%), Positives = 159/510 (31%), Gaps = 67/510 (13%)

Query: 73  SSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLV 132
             S + ++      +      A    + +     + ++ L          +   G    V
Sbjct: 34  CKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYV 93

Query: 133 TLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQ 192
                             P +  +  +   L E+ L  + ++   +E    ++      +
Sbjct: 94  -----------------YPWIEAMSSSYTWLEEIRLKRMVVTDDCLE---LIAKSFKNFK 133

Query: 193 VLSLSGCFLSGPVD-----PSLSNLRSLSVIRLDMNDLYSPVPEFLAD-FSNLTSLYLSS 246
           VL LS C             +  NL+ L +   D++D+         D +++L SL +S 
Sbjct: 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC 193

Query: 247 CG--LHGAFPEKILQ-LPTLETLDLSYNELLQGSLPDFHQNLSLETLILSA------TNF 297
               +  +  E+++   P L++L L+    L+       +   LE L           + 
Sbjct: 194 LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253

Query: 298 SGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS--GPIPSLHMF 355
              L  ++   K L  +  +       +P   S  S+L  L++S+        +  L   
Sbjct: 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313

Query: 356 RNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLF----------ELP 405
             L  L +   I   G+  +      +L  + +  +      P                P
Sbjct: 314 PKLQRLWVLDYIEDAGLEVLA-STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372

Query: 406 MVQHLLLADNQF-DGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFEL----------- 453
            ++ +L    Q  +  +  I+    ++     L     + P  L+   L           
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTR-FRLCIIEPKAPDYLTLEPLDIGFGAIVEHC 431

Query: 454 KNLKILLLSSNKFVGTIELDAI-QRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLA 512
           K+L+ L LS    +     + I    + +  L +++   + +    V      L  L + 
Sbjct: 432 KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489

Query: 513 SCKLS---AIPNLRKQTKLYHLDLSDNQIS 539
            C       + N  K   +  L +S   +S
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 75/482 (15%), Positives = 145/482 (30%), Gaps = 74/482 (15%)

Query: 171 VNISAPGIEWCQALSSLVPKLQVLSLSGC-----------FLSGPVDPSL-------SNL 212
           V I          +    PK++ + L G               G V P +       + L
Sbjct: 48  VFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107

Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSC-GLHGAFPEKILQ-LPTLETLDLSY 270
             + + R+ + D    +      F N   L LSSC G        I      L+ LDL  
Sbjct: 108 EEIRLKRMVVTD--DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165

Query: 271 NELLQGSLPDFHQ----NLSLETLILSATNFSGILPDS-----IKNLKNLSRVEFYLCNF 321
           +++   S            SL +L +S    +  +  S     +    NL  ++      
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNIS--CLASEVSFSALERLVTRCPNLKSLKLNRAVP 223

Query: 322 NGPIPTSMSDLSQLVYLDMSF-------NHFSGPIPSLHMFRNLAYLDLSYNIFTGGISS 374
              + T +    QL  L           + +SG   +L   + L  L   ++     + +
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA 283

Query: 375 IGWEQLLNLFHVDLSHNNLGG-SIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSL-- 431
           +       L  ++LS+  +    + + L + P +Q L + D   D  +  +++    L  
Sbjct: 284 VY-SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE 342

Query: 432 LDTLDLSDNNLEGPIPLS-------FFELKNLKILLLSSNKFVGTIELDAI-QRLRNLFR 483
           L         +E  + L+             L+  +L   + +    L  I +   N+ R
Sbjct: 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE-SVLYFCRQMTNAALITIARNRPNMTR 401

Query: 484 LDLSYNRLAVVAGSSVYC----------FPPLLTTLSLASCK----LSAIPNLRKQTKLY 529
             L           ++                L  LSL+          I       K+ 
Sbjct: 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYI--GTYAKKME 459

Query: 530 HLDLSDNQISGEIPNWLWKIGKDSFN--HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSN 587
            L ++    S      +  +     +   L +            + S L ++  L + S 
Sbjct: 460 MLSVAFAGDSDL---GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

Query: 588 QI 589
            +
Sbjct: 517 SV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 61/482 (12%), Positives = 140/482 (29%), Gaps = 59/482 (12%)

Query: 475 IQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLS 534
           I+R   +  ++L               +   +     A    S+   L        + L 
Sbjct: 62  IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAM--SSSYTWLE------EIRLK 113

Query: 535 DNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSI-SDLTSLSVLDLHSNQIQGK- 592
              ++ +    + K  K +F  L LS     S +   +I +   +L  LDL  + +    
Sbjct: 114 RMVVTDDCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS 172

Query: 593 ------IPPLPPNAAYVDYSG--NNFT----SSIPVDIGSFMSLSIFFSFSKNSLTGVIP 640
                  P    +   ++ S   +  +      +     +  SL +  +     L  ++ 
Sbjct: 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL- 231

Query: 641 ESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLR-----RNNLNGTVSATFPA 695
                A  L  L     Y + + P     +S +  G   LR      + +   + A +  
Sbjct: 232 ---QRAPQLEELGTGG-YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 696 NCSLRTLDLNGNQL--EGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR 753
              L TL+L+   +    +V K L  C  L+ L + +   D            L  L + 
Sbjct: 288 CSRLTTLNLSYATVQSYDLV-KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346

Query: 754 SNNFFGNISCPRYN--------VSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRS 805
            +  F                 +  P L+ +     + +          L  +     R+
Sbjct: 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA-------ALITI----ARN 395

Query: 806 QSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMG 865
           +  +   +   +      Y   +     G    + +       +  S    +        
Sbjct: 396 RPNMTRFRLCIIEPKAPDYL-TLEPLDIGF-GAIVEHCKDLRRLSLSGLLTDKVFEYIGT 453

Query: 866 LLQSLCALNLSHNALTG-SIPSLIGNLREIESLDLS-MNNLSGTIPAQLASLNFLSVLNL 923
             + +  L+++    +   +  ++     +  L++         + A  + L  +  L +
Sbjct: 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513

Query: 924 SY 925
           S 
Sbjct: 514 SS 515

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 44/216 (20%), Positives = 67/216 (31%), Gaps = 60/216 (27%)

Query: 479 RNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDN 536
                LDLS+N L+ +           L +L L+   L+ I +        L +LDLS N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 537 QISGEIPNWLWKIGKDSFN------HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
            +          + +  F+       L L +N +V ++   +  D+  L  L L  NQI 
Sbjct: 99  HLH--------TLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQIS 149

Query: 591 GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLL 650
                                   PV        +                       L+
Sbjct: 150 ----------------------RFPV--ELIKDGN-------------------KLPKLM 166

Query: 651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLN 686
           +LDLS N L  +  T L  +       L L  N L 
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 29/180 (16%)

Query: 387 DLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEISNAS-SSL--LDTLDLSDNNL 442
           DLSHNNL     +     L  +  LLL+ N     +  IS+ +   +  L  LDLS N+L
Sbjct: 45  DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH----LNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 443 EGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCF 502
                  F +L+ L++LLL +N  +  ++ +A + +  L +L LS N+++         F
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS--------RF 151

Query: 503 PPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHN 562
           P               I +  K  KL  LDLS N++       L K+     N L L +N
Sbjct: 152 PV------------ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 14/165 (8%)

Query: 161 AELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRL 220
           +    L L   N+S   +      + L   L  L LS   L+     +   + +L  + L
Sbjct: 39  SYTALLDLSHNNLSR--LRAEWTPTRL-TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 221 DMNDLYSPVPEFLADFSNLTSLYLSSCGL----HGAFPEKILQLPTLETLDLSYNELLQ- 275
             N L++      +D   L  L L +  +      AF      +  L+ L LS N++ + 
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE----DMAQLQKLYLSQNQISRF 151

Query: 276 --GSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYL 318
               + D ++   L  L LS+     +    ++ L    +   YL
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 40/185 (21%), Positives = 65/185 (35%), Gaps = 33/185 (17%)

Query: 557 LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPV 616
           L+LSHN L  L   ++ + LT+L  L L  N +   I                       
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS--------------------- 81

Query: 617 DIGSFMSLS--IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQ 674
              +F+ +    +   S N L  +      +   L VL L  N++  +      +M  +Q
Sbjct: 82  --EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM--AQ 137

Query: 675 LGVLNLRRNNLNGTVSATFPANC---SLRTLDLNGNQLEGMVPKSLANCSVL--EILDLG 729
           L  L L +N ++               L  LDL+ N+L+ +    L          L L 
Sbjct: 138 LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

Query: 730 NNQFD 734
           NN  +
Sbjct: 198 NNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 12/160 (7%)

Query: 603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESI-CNATNLLVLDLSYNYLSG 661
           +  S     + +P  + S+ +L      S N+L+ +  E      TNL  L LS+N+L+ 
Sbjct: 23  LSCSKQQLPN-VPQSLPSYTAL---LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 662 MIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCS 721
           +     + +    L  L+L  N+L+      F    +L  L L  N +  +   +  + +
Sbjct: 79  ISSEAFVPVP--NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136

Query: 722 VLEILDLGNNQF----DDTFPCWVKNASRLHVLILRSNNF 757
            L+ L L  NQ      +          +L +L L SN  
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDG-NKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 47/196 (23%)

Query: 261 PTLETLDLSYNELLQGSLP---DFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFY 317
                LDLS+N L    L       +  +L +L+LS  + + I  ++             
Sbjct: 39  SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA------------- 83

Query: 318 LCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLA---YLDLSYNIFTGGISS 374
              F          +  L YLD+S NH    +    +F +L     L L  N     I  
Sbjct: 84  ---FVP--------VPNLRYLDLSSNHLHT-LDE-FLFSDLQALEVLLLYNN----HIVV 126

Query: 375 IGWEQ---LLNLFHVDLSHNNLGGSIPQSLFE----LPMVQHLLLADNQFDG-HVTEISN 426
           +       +  L  + LS N +    P  L +    LP +  L L+ N+     +T++  
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

Query: 427 ASSSLLDTLDLSDNNL 442
             + + + L L +N L
Sbjct: 186 LPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 30/185 (16%)

Query: 577 TSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLS--IFFSFSKNS 634
           +  ++LDL  N +      L                           L+       S N 
Sbjct: 39  SYTALLDLSHNNLSR----LRAEWT-------------------PTRLTNLHSLLLSHNH 75

Query: 635 LTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFP 694
           L  +  E+     NL  LDLS N+L  +      ++    L VL L  N++       F 
Sbjct: 76  LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL--QALEVLLLYNNHIVVVDRNAFE 133

Query: 695 ANCSLRTLDLNGNQLEGMVPKSLANCSV---LEILDLGNNQFDDTFPCWVKNASRLHVLI 751
               L+ L L+ NQ+     + + + +    L +LDL +N+        ++         
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 752 LRSNN 756
           L  +N
Sbjct: 194 LYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 19/170 (11%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGF 117
           LDLS  ++S  +    +   L  L SL L+ N  +   I S     + NL  L+LS+   
Sbjct: 44  LDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHN--HLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 118 AGQIPIQV-SGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAP 176
              +   + S +  L  L L   + V               +++A+L++LYL    IS  
Sbjct: 101 H-TLDEFLFSDLQALEVLLLYNNHIVVVD--------RNAFEDMAQLQKLYLSQNQISR- 150

Query: 177 GIEWCQALSSLV--PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND 224
                + +      PKL +L LS   L       L  L +     L +++
Sbjct: 151 -FPV-ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.7 bits (175), Expect = 6e-13
 Identities = 60/367 (16%), Positives = 105/367 (28%), Gaps = 41/367 (11%)

Query: 166 LYLDGV--NISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMN 223
            Y   +        +  C  +S     L V       +   +   L  +    +      
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 224 DLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQ 283
                 P  +       +        H             E + L      +    D   
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDR--PECWCRDSAT 347

Query: 284 NLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFN 343
           +  L    LS    S +L   +++ K L  +E          P +   L  ++ L  + +
Sbjct: 348 DEQLFRCELSV-EKSTVLQSELESCKELQELE----------PENKWCLLTIILLMRALD 396

Query: 344 HFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE 403
                  +L  F  L  +D                  +   ++D   +           E
Sbjct: 397 PLLYEKETLQYFSTLKAVDP-----------------MRAAYLDDLRSKFLLENSVLKME 439

Query: 404 LPMVQHLLLADNQFDGHVTEISNASS-SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLS 462
              V+ L LA       +T + +     L+  LDLS N L   +P +   L+ L++L  S
Sbjct: 440 YADVRVLHLAHKD----LTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQAS 494

Query: 463 SNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNL 522
            N       +D +  L  L  L L  NRL   A        P L  L+L    L     +
Sbjct: 495 DNALE---NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

Query: 523 RKQTKLY 529
           +++    
Sbjct: 552 QERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.9 bits (173), Expect = 1e-12
 Identities = 34/260 (13%), Positives = 74/260 (28%), Gaps = 37/260 (14%)

Query: 331 DLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSH 390
                    +  +              L   +LS    T   S +  E    L  ++  +
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSEL--ESCKELQELEPEN 381

Query: 391 NNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSF 450
                +I   +  L  + +      +   + + +          LD   +       +  
Sbjct: 382 KWCLLTIILLMRALDPLLYE----KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK 437

Query: 451 FELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLS 510
            E  ++++L L+         L  +++L  +  LDLS+NRL  +  +        L  L 
Sbjct: 438 MEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPALAAL--RCLEVLQ 492

Query: 511 LASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQP 570
            +   L  +  +    +L  L L +N++                                
Sbjct: 493 ASDNALENVDGVANLPRLQELLLCNNRLQ--------------------------QSAAI 526

Query: 571 YSISDLTSLSVLDLHSNQIQ 590
             +     L +L+L  N + 
Sbjct: 527 QPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 5e-09
 Identities = 53/247 (21%), Positives = 87/247 (35%), Gaps = 39/247 (15%)

Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
            L   +L+  +   ++   L +C  L+ L+  N     T    ++    L         F
Sbjct: 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 408

Query: 758 FGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFL 817
                          L+ +D     +   L  K+LL           S  ++++   R L
Sbjct: 409 -------------STLKAVDPMRAAYLDDLRSKFLLE---------NSVLKMEYADVRVL 446

Query: 818 NLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSH 877
           +L+       +T  +  LE      L + T +D S N     +P  +  L+ L  L  S 
Sbjct: 447 HLAH----KDLT-VLCHLEQ-----LLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495

Query: 878 NALTGSIPSLIGNLREIESLDLSMNNLSGTIPA--QLASLNFLSVLNLSYNHLVGRIPTS 935
           NAL  ++  +  NL  ++ L L  N L     A   L S   L +LNL  N L       
Sbjct: 496 NALE-NVDGV-ANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

Query: 936 TQLQSFL 942
            +L   L
Sbjct: 553 ERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 6e-09
 Identities = 46/316 (14%), Positives = 88/316 (27%), Gaps = 19/316 (6%)

Query: 8   CQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVD-CDEAGRVIGLDLSEESI 66
              ++  L +     LT  S +   ++   ++     W   D  +    V   DL   S+
Sbjct: 250 VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASL 309

Query: 67  SAGIDNSSSLFSLKYLQSL-NLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQV 125
           +  +   +         S                       L    LS       +  ++
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSEL 368

Query: 126 SGMTRLVTLDLSGMYF----VRAPLKLE----NPNLSGLLQNLAELRELYLDGVNISAPG 177
                L  L+    +     +     L+              L  +  +    ++     
Sbjct: 369 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428

Query: 178 IEWCQALS-SLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF 236
                ++       ++VL L+   L+      L  L  ++ + L  N L   +P  LA  
Sbjct: 429 FLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRL-RALPPALAAL 485

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQ-GSLPDFHQNLSLETLILSAT 295
             L  L  S   L     + +  LP L+ L L  N L Q  ++        L  L L   
Sbjct: 486 RCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

Query: 296 NFSGILPDSIKNLKNL 311
           +         + L  +
Sbjct: 544 SLCQE-EGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 4e-06
 Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 29/168 (17%)

Query: 33  MVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMF 92
            +   +S      S +  + A   + L L+ + ++  + +   L  L  +  L+L+ N  
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRV-LHLAHKDLTV-LCH---LEQLLLVTHLDLSHNRL 475

Query: 93  NATEIPSGLGNLTNLTTLNLSN------AGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPL 146
               +P  L  L  L  L  S+       G         + + RL  L L          
Sbjct: 476 --RALPPALAALRCLEVLQASDNALENVDGV--------ANLPRLQELLLCNN------- 518

Query: 147 KLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVL 194
           +L+       L +   L  L L G ++        + L+ ++P +  +
Sbjct: 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ-ERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 5e-05
 Identities = 59/368 (16%), Positives = 105/368 (28%), Gaps = 46/368 (12%)

Query: 49  DCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLT 108
           +  +    + +   E  +S       ++ S      L +     +         N  +  
Sbjct: 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHV 299

Query: 109 TLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYL 168
            L    A        Q +        D      +           S   + L    EL +
Sbjct: 300 WLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRC-ELSV 358

Query: 169 DGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSP 228
           +   +    +E C+ L  L P+ +   L+   L   +DP L    +L       + L + 
Sbjct: 359 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF----STLKAV 414

Query: 229 VPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLE 288
            P   A   +L S +L             ++   +  L L++ +L    L    Q L + 
Sbjct: 415 DPMRAAYLDDLRSKFLLE------NSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVT 466

Query: 289 TLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGP 348
            L LS      + P ++  L+ L                          L  S N     
Sbjct: 467 HLDLSHNRLRAL-PPALAALRCL------------------------EVLQASDNALEN- 500

Query: 349 IPSLHMFRNLAYLDLSYNIFTG--GISSIGWEQLLNLFHVDLSHNNLG---GSIPQSLFE 403
           +  +     L  L L  N       I  +       L  ++L  N+L    G   +    
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLV--SCPRLVLLNLQGNSLCQEEGIQERLAEM 558

Query: 404 LPMVQHLL 411
           LP V  +L
Sbjct: 559 LPSVSSIL 566

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 32/180 (17%)

Query: 426 NASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLD 485
            A+ +    L      +E  +  +   LK  K L LS+N      ++ ++  + NL  L 
Sbjct: 21  VATEAEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILS 76

Query: 486 LSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNW 545
           L  N +  +           L  L ++  +++++  + K   L                 
Sbjct: 77  LGRNLIKKIENLD--AVADTLEELWISYNQIASLSGIEKLVNL----------------- 117

Query: 546 LWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDY 605
                      L +S+N + +  +   ++ L  L  L L  N +          + Y   
Sbjct: 118 ---------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 25/180 (13%)

Query: 318 LCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSI-G 376
                  + T    +     L            +L   +   +L LS N     I  I  
Sbjct: 14  FEERKSVVATEAEKVE----LHGMIPPIEKMDATLSTLKACKHLALSTN----NIEKISS 65

Query: 377 WEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASS-SLLDTL 435
              + NL  + L  N +   I         ++ L ++ NQ    +  +S       L  L
Sbjct: 66  LSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ----IASLSGIEKLVNLRVL 120

Query: 436 DLSDNNLEGPIPLSFF-ELKNLKILLLSSNKFVGTIELDA---------IQRLRNLFRLD 485
            +S+N +     +     L  L+ LLL+ N      + +          ++RL NL +LD
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 58/200 (29%)

Query: 82  LQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYF 141
            + + L   +    ++ + L  L     L LS                            
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE----------------------- 61

Query: 142 VRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF- 200
                K+ +      L  +  LR L L    I        + L ++   L+ L +S    
Sbjct: 62  -----KISS------LSGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQI 105

Query: 201 --LSGPVDPSLSNLRSLSVIRLDMNDLYSPVP-EFLADFSNLTSLYLSSCGLHGAFPEK- 256
             LSG     +  L +L V+ +  N + +    + LA    L  L L+   L+  + E  
Sbjct: 106 ASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160

Query: 257 ---------ILQLPTLETLD 267
                    + +LP L+ LD
Sbjct: 161 ATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 10/108 (9%)

Query: 629 SFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSD-SQLGVLNLRRNNLNG 687
                 +   +  ++        L LS N +       + ++S    L +L+L RN +  
Sbjct: 31  HGMIPPIEK-MDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRNLIK- 83

Query: 688 TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD 735
            +        +L  L ++ NQ+  +    +     L +L + NN+  +
Sbjct: 84  KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITN 129

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 32/242 (13%)

Query: 74  SSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVT 133
           +  FS   +Q ++L+ ++   + +   L   + L  L+L     +  I   ++  + LV 
Sbjct: 87  AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146

Query: 134 LDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDG-VNISAPGIEWCQALSSLVPKLQ 192
           L+LSG              L  LL + + L EL L    + +   ++   A++ +   + 
Sbjct: 147 LNLSGCS------GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETIT 198

Query: 193 VLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSC-GLHG 251
            L+LSG                    R ++    S +   +    NL  L LS    L  
Sbjct: 199 QLNLSGY-------------------RKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLKN 237

Query: 252 AFPEKILQLPTLETLDLSYNELL-QGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKN 310
              ++  QL  L+ L LS    +   +L +  +  +L+TL +      G L    + L +
Sbjct: 238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH 297

Query: 311 LS 312
           L 
Sbjct: 298 LQ 299

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 14/218 (6%)

Query: 185 SSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYL 244
             L   +        F+  P+    S  R   +   +     S +   L+  S L +L L
Sbjct: 66  RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125

Query: 245 SSCGLHGAFPEKILQLPTLETLDLSYNELLQ-GSLPDFHQNLS-LETLILSATNF---SG 299
               L       + +   L  L+LS        +L     + S L+ L LS         
Sbjct: 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185

Query: 300 ILPDSIKNLKNLSRVEFYLCNFN---GPIPTSMSDLSQLVYLDMSFNHF--SGPIPSLHM 354
           +        + ++++       N     + T +     LV+LD+S +    +        
Sbjct: 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245

Query: 355 FRNLAYLDLSY--NIFTGGISSIGWEQLLNLFHVDLSH 390
              L +L LS   +I    +  +G  ++  L  + +  
Sbjct: 246 LNYLQHLSLSRCYDIIPETLLELG--EIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 54/275 (19%), Positives = 97/275 (35%), Gaps = 25/275 (9%)

Query: 372 ISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHL---------LLADNQFDGHVT 422
           +   G     ++    LS   +    P+S  + P+ +H          L         + 
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 111

Query: 423 EISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAI-QRLRNL 481
            I +  S L   L L    L  PI  +  +  NL  L LS         L  +      L
Sbjct: 112 GILSQCSKLQ-NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

Query: 482 FRLDLSYNRL----AVVAGSSVYCFPPLLTTLSLASCKL----SAIPNL-RKQTKLYHLD 532
             L+LS+        V    +       +T L+L+  +     S +  L R+   L HLD
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVS--ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228

Query: 533 LSD-NQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQG 591
           LSD   +  +     +++      HL+LS    +  E    + ++ +L  L +      G
Sbjct: 229 LSDSVMLKNDCFQEFFQLNY--LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 286

Query: 592 KIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSI 626
            +  L     ++  + ++FT+     IG+  +  I
Sbjct: 287 TLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 321

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.3 bits (164), Expect = 1e-11
 Identities = 67/456 (14%), Positives = 136/456 (29%), Gaps = 58/456 (12%)

Query: 103 NLTNLTTLNLSNAGF--AGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNL 160
           NL  L +++             +  +    L TL L                L  ++ + 
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS------GFTTDGLLSIVTHC 163

Query: 161 AELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSL-------SNLR 213
            +++ L ++  + S    +W   L+     L+VL+      +      L        +L 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 214 SLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETL-DLSYNE 272
           S+ V   ++ +L      F    +NL      S       PEK + L     L  L  + 
Sbjct: 224 SVKVGDFEILELVG----FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 273 LLQGSLPDFHQNL-SLETLILS-ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMS 330
           +    +P        +  L L  A   +      I+   NL  +E      +  +     
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 331 DLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFT-GGISSIGWEQLLNLFHVDLS 389
              QL  L +                +   ++    + +  G+ ++  +    L ++ + 
Sbjct: 340 YCKQLKRLRIER------------GADEQGMEDEEGLVSQRGLIALA-QGCQELEYMAVY 386

Query: 390 HNNLGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPL 448
            +++     +S+   L  +    L                  L     ++D  L+  +  
Sbjct: 387 VSDITNESLESIGTYLKNLCDFRL----------------VLLDREERITDLPLDNGVRS 430

Query: 449 SFFELKNLKILLLSSN-KFVGTIELDAI-QRLRNLFRLDLSYNRLAVVAGSSVYCFPPLL 506
                K L+          +  + L  I Q   N+  + L Y   +           P L
Sbjct: 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490

Query: 507 TTLSLASCKLS--AIPNLRKQ-TKLYHLDLSDNQIS 539
             L +  C  S  AI     +   L +L +   + S
Sbjct: 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.5 bits (149), Expect = 8e-10
 Identities = 57/444 (12%), Positives = 135/444 (30%), Gaps = 70/444 (15%)

Query: 151 PNLSGL-LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGC--------FL 201
           PNL  L L+         L   N       W   +S+ + +L+ +              L
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132

Query: 202 SGPVDPSLSNL--------------------RSLSVIRLDMNDLYSPVPEFLADFS---- 237
           +      L  L                    R +  + ++ +       ++L + +    
Sbjct: 133 AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192

Query: 238 NLTSLYLSSCGLHGAFPEKILQL----PTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
           +L  L           P+ +  +     +L ++ +   E+L+     F    +LE     
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGG 251

Query: 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGP--IPTSMSDLSQLVYLDMSFNHFSGP--I 349
           + N    +P+   NL    ++     ++ GP  +P      +Q+  LD+ +         
Sbjct: 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC 311

Query: 350 PSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQH 409
             +    NL  L+    I   G+  +  +    L  + +        +      +     
Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLA-QYCKQLKRLRIERGADEQGMEDEEGLVS---- 366

Query: 410 LLLADNQFDGHVTEISNASSSLLDTLDLSDNNL--EGPIPLSFF--ELKNLKILLLSSNK 465
                      +  ++     L   + +  +++  E    +  +   L + +++LL   +
Sbjct: 367 --------QRGLIALAQGCQELE-YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417

Query: 466 FVGTIELDA-----IQRLRNLFRLDLSYNRLAV--VAGSSVYCFPPLLTTLSLASCKLS- 517
            +  + LD      +   + L R      +  +  +  S +  + P +  + L     S 
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477

Query: 518 --AIPNLRKQTKLYHLDLSDNQIS 539
              +   R    L  L++     S
Sbjct: 478 EGLMEFSRGCPNLQKLEMRGCCFS 501

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.9 bits (124), Expect = 8e-07
 Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 82  LQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNA-GFAGQIPIQVSGMTRLVTLDLSG-- 138
           ++ L+L + +    +  + +    NL  L   N  G  G   +      +L  L +    
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL-AQYCKQLKRLRIERGA 353

Query: 139 --MYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSL 196
                      +    L  L Q   EL  + +   +I+   +E   ++ + +  L    L
Sbjct: 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE---SIGTYLKNLCDFRL 410

Query: 197 SGC---------FLSGPVDPSLSNLRSLSVIRLDMN--DLYSPVPEFLADF-SNLTSLYL 244
                        L   V   L   + L      +    L      ++  +  N+  + L
Sbjct: 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470

Query: 245 SSCGLHGAFPEKILQ-LPTLETLDLSYNELLQGSLPDFHQNL-SLETLILSATNFS 298
              G       +  +  P L+ L++      + ++      L SL  L +     S
Sbjct: 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 47/160 (29%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
           + LDL    L      +F  L  L  L L  N+   T+       L  L  L L+ N+LA
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 493 VVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLW-KI 549
            +    V+     L  L L   +L ++P+    + TKL  L L+ NQ+   IP   + K+
Sbjct: 97  SLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 550 GKDSFNHLNLSHNLLVSLEQPYSISD-LTSLSVLDLHSNQ 588
                  L+LS N L S+  P+   D L  L  + L  NQ
Sbjct: 155 TN--LQTLSLSTNQLQSV--PHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 45/164 (27%), Positives = 64/164 (39%), Gaps = 27/164 (16%)

Query: 387 DLSHNNLGGSIPQSLFELPMVQHLLLADNQ--------FDGHVTEISNASSSLLDTLDLS 438
           DL    L      +   L  +  L L  NQ        FD             L TL L+
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE---------LGTLGLA 91

Query: 439 DNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL-AVVAGS 497
           +N L       F  L  L  L L  N+   ++      RL  L  L L+ N+L ++ AG 
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAG- 149

Query: 498 SVYCFPPL--LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQ 537
               F  L  L TLSL++ +L ++P+    +  KL  + L  NQ
Sbjct: 150 ---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 57/251 (22%), Positives = 81/251 (32%), Gaps = 89/251 (35%)

Query: 483 RLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISG 540
           +LDL    LA ++  + +     LT L+L   +L  +        T+L  L L++NQ++ 
Sbjct: 39  KLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 541 EIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISD-LTSLSVLDLHSNQIQGKIPPLPPN 599
                                    SL  P  + D LT L  L L  NQ++  +P     
Sbjct: 97  -------------------------SL--PLGVFDHLTQLDKLYLGGNQLK-SLPS---- 124

Query: 600 AAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYL 659
                              G F  L                      T L  L L+ N L
Sbjct: 125 -------------------GVFDRL----------------------TKLKELRLNTNQL 143

Query: 660 SGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLAN 719
              IP    +   + L  L+L  N L       F     L+T+ L GNQ          +
Sbjct: 144 QS-IPAGAFD-KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF---------D 192

Query: 720 CSVLEILDLGN 730
           CS  EIL L  
Sbjct: 193 CSRCEILYLSQ 203

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 52/224 (23%), Positives = 80/224 (35%), Gaps = 60/224 (26%)

Query: 515 KLSAIP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSI 573
            L ++P  +   T+   LDL    ++         + K ++  LNL +N L +L     +
Sbjct: 25  SLDSVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTW--LNLDYNQLQTL--SAGV 78

Query: 574 SD-LTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSK 632
            D LT L  L L +NQ+   +P                        G F  L        
Sbjct: 79  FDDLTELGTLGLANNQLA-SLPL-----------------------GVFDHL-------- 106

Query: 633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDS--QLGVLNLRRNNLNGTVS 690
                         T L  L L  N L   +P+    + D   +L  L L  N L    +
Sbjct: 107 --------------TQLDKLYLGGNQLKS-LPS---GVFDRLTKLKELRLNTNQLQSIPA 148

Query: 691 ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
             F    +L+TL L+ NQL+ +   +      L+ + L  NQFD
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 45/162 (27%), Positives = 64/162 (39%), Gaps = 14/162 (8%)

Query: 264 ETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNG 323
           E LDL    L   S   F     L  L L       +      +L  L  +       N 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG---LANNQ 94

Query: 324 --PIPTSMSD-LSQLVYLDMSFNHFSGPIPSLHMFR---NLAYLDLSYNIFTGGISSIGW 377
              +P  + D L+QL  L +  N     +PS  +F     L  L L+ N     I +  +
Sbjct: 95  LASLPLGVFDHLTQLDKLYLGGNQLKS-LPS-GVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 378 EQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQFD 418
           ++L NL  + LS N L  S+P   F+ L  +Q + L  NQFD
Sbjct: 152 DKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQFD 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 3e-11
 Identities = 92/610 (15%), Positives = 176/610 (28%), Gaps = 170/610 (27%)

Query: 402 FELPMVQHL---LLADNQ--F--DGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELK 454
           FE    Q+    +L+  +  F  +    ++ +   S+L   ++ D+ +     +S     
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI-DHIIMSKDAVS--GTL 65

Query: 455 NLKILLLSSNK-----FVGTIE-------LDAIQ-------RLRNLF--RLDLSYNRLAV 493
            L   LLS  +     FV  +        +  I+        +  ++  + D  YN   V
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 494 VAGSSVYCFPPLLTTLSLASCKLSAIPNLR--------KQTKLYHLDLSDNQISGEIPN- 544
            A  +V         L  A  +L    N+         K   +        ++  ++   
Sbjct: 126 FAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFK 183

Query: 545 --WLWKIGK-----DSFNHL-NLSHNLLVSLEQ--------PYSISDL------------ 576
             WL  +            L  L + +  +              I  +            
Sbjct: 184 IFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 577 --TSLSVLD-------LHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVD--IGSFM--- 622
               L VL         ++  +  KI          D+     T+ I +D    +     
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDL-------------SYNYLSGMIPTCLIN 669
             S+   +        +P  +   TN   L +             ++ +++    T +I 
Sbjct: 303 VKSLLLKYLDCRPQD-LPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 670 MSDSQLGVLNLRRN--NLNGTVSATFP--ANCSLRTL-----DLNGNQLEGMV----PKS 716
            S + L     R+    L     + FP  A+     L     D+  + +  +V      S
Sbjct: 361 SSLNVLEPAEYRKMFDRL-----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 717 LANC----SVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW-P 771
           L       S + I  +     +       +N   LH  I+   N       P+   S   
Sbjct: 416 LVEKQPKESTISIPSI---YLELKVKL--ENEYALHRSIVDHYNI------PKTFDSDDL 464

Query: 772 MLQIID----------LASNKFSGR--LPQKWLLNLEAMMVDEGRSQSELKHLQY----- 814
           +   +D          L + +   R  L +   L+   +       + +++H        
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL-------EQKIRHDSTAWNAS 517

Query: 815 -RFLNLSQ--AYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPI-PEEMGLLQSL 870
              LN  Q   +Y+  I       E  +  IL      DF     E  I  +   LL+  
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAIL------DFLPKIEENLICSKYTDLLRI- 570

Query: 871 CALNLSHNAL 880
            AL     A+
Sbjct: 571 -ALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 3e-10
 Identities = 110/672 (16%), Positives = 191/672 (28%), Gaps = 212/672 (31%)

Query: 266 LDLSYNELLQGSLPDFHQNLSLETL------ILSATNFSGIL--PDSIKNL--------- 308
               Y ++L      F  N   + +      ILS      I+   D++            
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 309 KNLSRVEFYL-----CNFN--------GPIPTSMSDLSQLVYLDMSFNH---FS-GPIPS 351
           K    V+ ++      N+              SM     +   D  +N    F+   +  
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 352 LHMFRNL--AYLDL--SYNIFTGGISSIG-----------------------W------- 377
           L  +  L  A L+L  + N+   G+   G                       W       
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 378 ------EQLLNLFH-VDLSHNNLG---GSIPQSLFELPMVQHLLLADNQFDGHVTEISNA 427
                 E L  L + +D +  +      +I   +  +      LL    +          
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------- 243

Query: 428 SSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQR-------LRN 480
            + LL  L++ +         + F L   KILL +  K V T  L A             
Sbjct: 244 ENCLLVLLNVQNAKA-----WNAFNLS-CKILLTTRFKQV-TDFLSAATTTHISLDHHSM 296

Query: 481 LFRLDLSYNRLAVVAGSSVYCFPPLLTTLS-LASCKLSAIPNLRKQTKLYHLDLSDNQIS 539
               D   + L           P  + T +      LS I    +      L   DN   
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR---LSIIAESIRD----GLATWDN--- 346

Query: 540 GEIPNWLWKIGKDSFNHLNLSHNLLVSLEQ--PYSISDL-TSLSVLDLHSNQIQGKIPPL 596
                  WK      N   L+  +  SL    P     +   LSV               
Sbjct: 347 -------WK----HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-------------- 381

Query: 597 PPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSY 656
           PP+A             IP  +     LS+ +     S   V+   +   + L+      
Sbjct: 382 PPSA------------HIPTIL-----LSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKE 423

Query: 657 NYLSGMIPTCLINMSDSQLGVLNLRRNNLNG-TVSATFPANCSLRTLDLNGNQLEG---- 711
           + +S  IP+  + +         L R+ ++   +  TF ++      DL    L+     
Sbjct: 424 STIS--IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD------DLIPPYLDQYFYS 475

Query: 712 MVPKSLANCSVLEILDLGNNQF-DDTF---------PCWVKNASRLHVLI-LRSNNFFGN 760
            +   L N    E + L    F D  F           W  + S L+ L  L+   +   
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK--FYKPY 533

Query: 761 I--SCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKH---LQYR 815
           I  + P+Y        +  +    F        L  +E  ++    S    K+   L+  
Sbjct: 534 ICDNDPKYE-----RLVNAIL--DF--------LPKIEENLI---CS----KYTDLLRIA 571

Query: 816 FLNLSQAYYQDA 827
            +   +A +++A
Sbjct: 572 LMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 7e-10
 Identities = 96/560 (17%), Positives = 168/560 (30%), Gaps = 196/560 (35%)

Query: 10  SDQQSLLLQ-M----KSRLT----FDSSVSFRM---VQWSQSNDCCT-----------WS 46
              +++L+  +    K+ +         V  +M   + W    +C +             
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 47  GVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLK-YLQSLNLAFNMFNATEIPSGLGNLT 105
            +D +   R       +  I +       L   K Y   L L         +   L N+ 
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-L---------V---LLNVQ 254

Query: 106 NLTTLNLSNAGFAGQIPIQVSGMTR--LVTLDLSGMYFVRAPLKLENPNLSGLLQNLAEL 163
           N    N     F     I ++  TR   VT  LS        L   +  L+       E+
Sbjct: 255 NAKAWN----AFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTLT-----PDEV 303

Query: 164 RELYLDGVNISAPGIEWCQALSSLVPKL--QVLSLSGCFLSGPVDPSLSNLRSL------ 215
           + L L  ++         Q L   V     + LS+    +   +  +  N + +      
Sbjct: 304 KSLLLKYLDCR------PQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLT 356

Query: 216 SVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPE--KILQLP--TLETL--DLS 269
           ++I   +N L  P  E+   F  L             FP    I   P   L  +  D+ 
Sbjct: 357 TIIESSLNVL-EP-AEYRKMFDRL-----------SVFPPSAHI---PTILLSLIWFDVI 400

Query: 270 Y-------NELLQGSLPDFHQN---LSLETLILSATNFSGILPDSIKNLKNLSR--VEFY 317
                   N+L + SL +       +S+ ++ L        L   ++N   L R  V+ Y
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-------LKVKLENEYALHRSIVDHY 453

Query: 318 LCNFNGPIPTSMSDLSQLVYLDM-SFNHFS------GPIPSLHMFRNLAYLDLSYNIFTG 370
               N P      DL    YLD   ++H             + +FR + +LD        
Sbjct: 454 ----NIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFR------ 501

Query: 371 GISSIGW-EQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASS 429
                 + EQ +                                      H +   NAS 
Sbjct: 502 ------FLEQKIR-------------------------------------HDSTAWNASG 518

Query: 430 SLLDTL-DL-------SDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQ-RLRN 480
           S+L+TL  L        DN+ +       +E   +  +L     F+  IE + I  +  +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPK-------YERL-VNAIL----DFLPKIEENLICSKYTD 566

Query: 481 LFRLDLSYNRLAVVAGSSVY 500
           L R+ L           +++
Sbjct: 567 LLRIALMA------EDEAIF 580

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 474 AIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDL 533
               +R L  LD   +    + G +       L  LSL +  L ++ NL K  KL  L+L
Sbjct: 22  TPAAVRELV-LDNCKSNDGKIEGLTAEF--VNLEFLSLINVGLISVSNLPKLPKLKKLEL 78

Query: 534 SDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQI 589
           S+N+I G   + L +    +  HLNLS N L  +     +  L  L  LDL + ++
Sbjct: 79  SENRIFG-GLDMLAE-KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 423 EISNASSSLLDTLDLSDN-NLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNL 481
           E+ N + + +  L L +  + +G I     E  NL+ L L +   +    +  + +L  L
Sbjct: 17  ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKL 73

Query: 482 FRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCK---LSAIPNLRKQTKLYHLDLSDNQI 538
            +L+LS NR+            P LT L+L+  K   +S +  L+K   L  LDL + ++
Sbjct: 74  KKLELSENRIFGGLDMLAEKL-PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

Query: 539 S 539
           +
Sbjct: 133 T 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 387 DLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASS-SLLDTLDLSDNNLEGP 445
           D   +N G  I     E   ++ L L +      +  +SN      L  L+LS+N + G 
Sbjct: 32  DNCKSNDG-KIEGLTAEFVNLEFLSLINVG----LISVSNLPKLPKLKKLELSENRIFGG 86

Query: 446 IPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
           + +   +L NL  L LS NK      L+ +++L  L  LDL    + 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 4/116 (3%)

Query: 667 LINMSDSQLGVLNLRRNNLNGTVSATFPANC-SLRTLDLNGNQLEGMVPKSLANCSVLEI 725
           L N + + +  L L     N        A   +L  L L    L  +   +L     L+ 
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKK 75

Query: 726 LDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN 781
           L+L  N+         +    L  L L S N   +IS          L+ +DL + 
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNL-SGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 11/135 (8%)

Query: 330 SDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSI-GWEQLLNLFHVDL 388
           + + +LV LD   ++          F NL +L L       G+ S+    +L  L  ++L
Sbjct: 24  AAVRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINV----GLISVSNLPKLPKLKKLEL 78

Query: 389 SHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISN-ASSSLLDTLDLSDN---NLEG 444
           S N + G +     +LP + HL L+ N+    ++ +        L +LDL +    NL  
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLND 137

Query: 445 PIPLSFFELKNLKIL 459
                F  L  L  L
Sbjct: 138 YRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)

Query: 325 IPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLF 384
           I    ++   L +L +        + +L     L  L+LS N   GG+  +  E+L NL 
Sbjct: 41  IEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLT 98

Query: 385 HVDLSHNNLGG-SIPQSLFELPMVQHLLLADN 415
           H++LS N L   S  + L +L  ++ L L + 
Sbjct: 99  HLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 30/143 (20%)

Query: 152 NLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSN 211
           +L    +  A +REL LD    +   IE    L++    L+ LSL    L      S+SN
Sbjct: 15  HLELRNRTPAAVRELVLDNCKSNDGKIE---GLTAEFVNLEFLSLINVGLI-----SVSN 66

Query: 212 LRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYN 271
           L  L                       L  L LS   + G       +LP L  L+LS N
Sbjct: 67  LPKLP---------------------KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 272 EL-LQGSLPDFHQNLSLETLILS 293
           +L    +L    +   L++L L 
Sbjct: 106 KLKDISTLEPLKKLECLKSLDLF 128

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 637 GVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPAN 696
           G I        NL  L L    L  +  + L  +   +L  L L  N + G +       
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKL--PKLKKLELSENRIFGGLDMLAEKL 94

Query: 697 CSLRTLDLNGNQLEGMVP-KSLANCSVLEILDLGNN 731
            +L  L+L+GN+L+ +   + L     L+ LDL N 
Sbjct: 95  PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 853 RNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQL 912
             + +G I        +L  L+L +  L  S+ +L   L +++ L+LS N + G +    
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSNL-PKLPKLKKLELSENRIFGGLDMLA 91

Query: 913 ASLNFLSVLNLSYNHL 928
             L  L+ LNLS N L
Sbjct: 92  EKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQL 709
           LVLD   +   G I           L  L+L    L     +  P    L+ L+L+ N++
Sbjct: 29  LVLDNCKSND-GKIEGLTAEFV--NLEFLSLINVGL--ISVSNLPKLPKLKKLELSENRI 83

Query: 710 EGMVPKSLANCSVLEILDLGNNQFDDTFPCWV-KNASRLHVLILRSN 755
            G +         L  L+L  N+  D       K    L  L L + 
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 29/135 (21%)

Query: 235 DFSNLTSLYLSSCGLH-GAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
             + +  L L +C  + G       +   LE L L    L+  S+ +  +   L+ L LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELS 79

Query: 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGP--IPS 351
                G L    + L NL+                        +L++S N       +  
Sbjct: 80  ENRIFGGLDMLAEKLPNLT------------------------HLNLSGNKLKDISTLEP 115

Query: 352 LHMFRNLAYLDLSYN 366
           L     L  LDL   
Sbjct: 116 LKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS--GTIPAQLASLNFLSVLNLS 924
           L  L  L LS N + G +  L   L  +  L+LS N L    T+   L  L  L  L+L 
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLF 128

Query: 925 YN 926
             
Sbjct: 129 NC 130

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 483 RLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISG 540
            L L+ N   V+  + ++   P L  ++ ++ K++ I        + +  + L+ N++  
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 541 EIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP 595
            + + ++K G +S   L L  N +  +    S   L+S+ +L L+ NQI   + P
Sbjct: 95  NVQHKMFK-GLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 386 VDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGP 445
           VD S+  L   IP+ +        L L +N+F              L  ++ S+N +   
Sbjct: 16  VDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 446 IPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL 505
              +F     +  +LL+SN+    ++    + L +L  L L  NR+  V   S   F  L
Sbjct: 73  EEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDS---FIGL 128

Query: 506 --LTTLSLASCKLSAIPN--LRKQTKLYHLDLSDN 536
             +  LSL   +++ +          L  L+L  N
Sbjct: 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 48/178 (26%)

Query: 557 LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPV 616
           L L++N    LE       L  L  ++  +N+I   I                       
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--------------------- 74

Query: 617 DIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLG 676
             G+F                         + +  + L+ N L  +       +    L 
Sbjct: 75  --GAFEGA----------------------SGVNEILLTSNRLENVQHKMFKGLE--SLK 108

Query: 677 VLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
            L LR N +    + +F    S+R L L  NQ+  + P +      L  L+L  N F+
Sbjct: 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 20/138 (14%)

Query: 361 LDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQ--- 416
           L L+ N FT   ++  +++L  L  ++ S+N +   I +  FE    V  +LL  N+   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 417 -----FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIE 471
                F G  +         L TL L  N +      SF  L ++++L L  N+   T+ 
Sbjct: 96  VQHKMFKGLES---------LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 472 LDAIQRLRNLFRLDLSYN 489
             A   L +L  L+L  N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 28/134 (20%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 631 SKNSLTGV---IPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNG 687
           S   L  +   IP           L L+ N  + +  T +      QL  +N   N +  
Sbjct: 19  SNQKLNKIPEHIP------QYTAELRLNNNEFTVLEATGIFK-KLPQLRKINFSNNKITD 71

Query: 688 TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF----DDTFPCWVKN 743
                F     +  + L  N+LE +  K       L+ L L +N+     +D+F      
Sbjct: 72  IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF----IG 127

Query: 744 ASRLHVLILRSNNF 757
            S + +L L  N  
Sbjct: 128 LSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 36/184 (19%), Positives = 56/184 (30%), Gaps = 34/184 (18%)

Query: 43  CTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLG 102
           C  + VDC          L+   I   I         +Y   L L  N F   E      
Sbjct: 11  CEGTTVDCS------NQKLN--KIPEHIP--------QYTAELRLNNNEFTVLEATGIFK 54

Query: 103 NLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLA 161
            L  L  +N SN      I      G + +  + L+                  + + L 
Sbjct: 55  KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQ--------HKMFKGLE 105

Query: 162 ELRELYLDGVNISA--PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIR 219
            L+ L L    I+          +   L   +++LSL    ++     +   L SLS + 
Sbjct: 106 SLKTLMLRSNRITCVGND-----SFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159

Query: 220 LDMN 223
           L  N
Sbjct: 160 LLAN 163

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 478 LRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQ 537
                 LDL   ++ V+              +  +  ++  +       +L  L +++N+
Sbjct: 18  AVRDRELDLRGYKIPVIENLGATL--DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR 75

Query: 538 ISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
           I   I   L +        L L++N LV L     ++ L SL+ L +  N + 
Sbjct: 76  IC-RIGEGLDQ-ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 386 VDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSL--LDTLDLSDNNLE 443
           V L+   +  +           + L L   +    +  I N  ++L   D +D SDN + 
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNEIR 55

Query: 444 GPIPLSFFE-LKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCF 502
               L  F  L+ LK LL+++N+ +  I     Q L +L  L L+ N L  +        
Sbjct: 56  ---KLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS 111

Query: 503 PPLLTTLSLASCKLSAIPNLRK 524
              LT L +    ++   + R 
Sbjct: 112 LKSLTYLCILRNPVTNKKHYRL 133

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 509 LSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLE 568
           + L +  +          +   LDL   +I   I N       D F+ ++ S N +  L+
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIEN--LGATLDQFDAIDFSDNEIRKLD 58

Query: 569 QPYSISDLTSLSVLDLHSNQI---QGKIPPLPPNAAYVDYSGNNFTS 612
                  L  L  L +++N+I      +    P+   +  + N+   
Sbjct: 59  G---FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 11/131 (8%)

Query: 361 LDLSYNIFTGGISSI-GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG 419
           + L+  +    I     +   +    +DL    +   I      L     +  +DN+   
Sbjct: 2   VKLTAEL----IEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE--- 53

Query: 420 HVTEISNASS-SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRL 478
            + ++        L TL +++N +          L +L  L+L++N  V   +LD +  L
Sbjct: 54  -IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 112

Query: 479 RNLFRLDLSYN 489
           ++L  L +  N
Sbjct: 113 KSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 157 LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLS 216
             N    REL L G  I    IE    L + + +   +  S   +   +D     LR L 
Sbjct: 15  YTNAVRDRELDLRGYKIPV--IEN---LGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLK 67

Query: 217 VIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHG-AFPEKILQLPTLETLDLSYNEL 273
            + ++ N +            +LT L L++  L      + +  L +L  L +  N +
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 641 ESICNATNLLVLDLSYNYLSGMIPTCLINMSDS--QLGVLNLRRNNLNGTVSATFPANCS 698
               NA     LDL    +       + N+  +  Q   ++   N +       FP    
Sbjct: 13  AQYTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRR 65

Query: 699 LRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD 735
           L+TL +N N++  +          L  L L NN   +
Sbjct: 66  LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE 102

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 37/140 (26%)

Query: 233 LADFSNLTSLYLSSCGLHGAFPEKI----LQLPTLETLDLSYNELLQGSLPDFHQNLSLE 288
             +      L L    +       I      L   + +D S NE+    L  F     L+
Sbjct: 15  YTNAVRDRELDLRGYKI-----PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLK 67

Query: 289 TLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGP 348
           TL+++      I     + L +L+                         L ++ N     
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLT------------------------ELILTNNSLVEL 103

Query: 349 --IPSLHMFRNLAYLDLSYN 366
             +  L   ++L YL +  N
Sbjct: 104 GDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 33/148 (22%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLG-NLTNLTTLNLSN--- 114
           + L+ E I      ++   +    + L+L        E    LG  L     ++ S+   
Sbjct: 2   VKLTAELIE----QAAQYTNAVRDRELDLRGYKIPVIE---NLGATLDQFDAIDFSDNEI 54

Query: 115 ---AGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGV 171
               GF          + RL TL ++     R           GL Q L +L EL L   
Sbjct: 55  RKLDGF--------PLLRRLKTLLVNNNRICRIG--------EGLDQALPDLTELILTNN 98

Query: 172 NISAPGIEWCQALSSLVPKLQVLSLSGC 199
           ++    +     L+SL   L  L +   
Sbjct: 99  SLV--ELGDLDPLASL-KSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 866 LLQSLCALNLSHNALTGSIPSLIG--NLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL 923
            L    A++ S N     I  L G   LR +++L ++ N +         +L  L+ L L
Sbjct: 40  TLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 924 SYNHL 928
           + N L
Sbjct: 96  TNNSL 100

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 4/109 (3%)

Query: 433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
             + L  N ++   P +F   K L+ + LS+N+ +  +  DA Q LR+L  L L  N++ 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 493 VVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQIS 539
            +   S++     L  L L + K++ +     +    L  L L DN++ 
Sbjct: 94  ELP-KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 18/102 (17%)

Query: 502 FPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNH--- 556
            P  +T + L    +  IP        KL  +DLS+NQIS E+         D+F     
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAP-------DAFQGLRS 81

Query: 557 ---LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP 595
              L L  N +  L        L SL +L L++N+I   +  
Sbjct: 82  LNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKIN-CLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 19/136 (13%)

Query: 338 LDMSFNHFSGPIPS--LHMFRNLAYLDLSYNIFTGGISSIG---WEQLLNLFHVDLSHNN 392
           + +  N     IP      ++ L  +DLS N     IS +    ++ L +L  + L  N 
Sbjct: 37  IRLEQNTIKV-IPPGAFSPYKKLRRIDLSNN----QISELAPDAFQGLRSLNSLVLYGNK 91

Query: 393 LGGSIPQSLFE-LPMVQHLLLADNQFDGHVTEI-SNASSSL--LDTLDLSDNNLEGPIPL 448
           +   +P+SLFE L  +Q LLL  N+    +  +  +A   L  L+ L L DN L+     
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNANK----INCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 449 SFFELKNLKILLLSSN 464
           +F  L+ ++ + L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 49/178 (27%)

Query: 557 LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPV 616
           + L  N +  +  P + S    L  +DL +NQI  ++ P                     
Sbjct: 37  IRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQIS-ELAP--------------------- 73

Query: 617 DIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLG 676
              +F  L                       +L  L L  N ++ +  +    +    L 
Sbjct: 74  --DAFQGL----------------------RSLNSLVLYGNKITELPKSLFEGLF--SLQ 107

Query: 677 VLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734
           +L L  N +N      F    +L  L L  N+L+ +   + +    ++ + L  N F 
Sbjct: 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 33/145 (22%), Positives = 50/145 (34%), Gaps = 21/145 (14%)

Query: 83  QSLNLAFNMFNATEIPSG-LGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGMY 140
             + L  N      IP G       L  ++LSN   + ++      G+  L +L L G  
Sbjct: 35  TEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 141 FVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGIEWCQALSSLVPKLQVLSLSG 198
               P          L + L  L+ L L+   I+          A   L   L +LSL  
Sbjct: 92  ITELP--------KSLFEGLFSLQLLLLNANKINCLRVD-----AFQDL-HNLNLLSLYD 137

Query: 199 CFLSGPVDPSLSNLRSLSVIRLDMN 223
             L      + S LR++  + L  N
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 20/155 (12%)

Query: 95  TEIPSGLGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLVTLDLSGMYFVRAPLKLENPNL 153
           TEIP+ L     +T + L        IP    S   +L  +DLS                
Sbjct: 24  TEIPTNL--PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELA-------- 72

Query: 154 SGLLQNLAELRELYLDGVNISA--PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSN 211
               Q L  L  L L G  I+     +        L   LQ+L L+   ++     +  +
Sbjct: 73  PDAFQGLRSLNSLVLYGNKITELPKSL-----FEGL-FSLQLLLLNANKINCLRVDAFQD 126

Query: 212 LRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSS 246
           L +L+++ L  N L +      +    + +++L+ 
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 446 IPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL 505
                   +NL  L + + + +  +EL  ++ L  L  L +  + L  VA  + +  P  
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR- 81

Query: 506 LTTLSLASCKLSAIP-NLRKQTKLYHLDLSDN 536
           L+ L+L+   L ++     +   L  L LS N
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 5/122 (4%)

Query: 639 IPESICNATNLLVLDLSYNYLSGMIPT-CLINMSDSQLGVLNLRRNNLNGTVSATFPANC 697
               +  A NL  L +        +    L  +   +L  L + ++ L       F    
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLG--ELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD-DTFPCWVKNASRLHVLILRSNN 756
            L  L+L+ N LE +  K++   S L+ L L  N         W++      +  +    
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK 139

Query: 757 FF 758
             
Sbjct: 140 LQ 141

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 14/108 (12%)

Query: 319 CNFNG--PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRN---LAYLDLSYNIFTGGIS 373
           C  +G       +     L  L +        +      R    L  L +  +    G+ 
Sbjct: 15  CTRDGALDSLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS----GLR 69

Query: 374 SIGWE---QLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFD 418
            +  +       L  ++LS N L  S+     +   +Q L+L+ N   
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 396 SIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKN 455
                L     +  L + + Q   H+          L  L +  + L    P +F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 456 LKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
           L  L LS N    ++    +Q L +L  L LS N L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPL 115

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 19/165 (11%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
           +D +  ++++++         L N++ L L  NK     ++ A++ L NL  L L+ N+L
Sbjct: 43  IDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLH---DISALKELTNLTYLILTGNQL 97

Query: 492 AVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKI 549
             +  + V+     L  L L   +L ++P+    K T L +L+L+ NQ+   +P  ++  
Sbjct: 98  QSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVF-- 153

Query: 550 GKDSF---NHLNLSHNLLVSLEQPYSISD-LTSLSVLDLHSNQIQ 590
             D       L+LS+N L SL  P  + D LT L  L L+ NQ++
Sbjct: 154 --DKLTNLTELDLSYNQLQSL--PEGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 52/264 (19%), Positives = 86/264 (32%), Gaps = 80/264 (30%)

Query: 483 RLDLSYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISG 540
           + +L    +             L  +  +   +  + ++  ++    + +L L  N++  
Sbjct: 23  KANLKKKSVT-----DAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH- 76

Query: 541 EIPNWLWKIGKDSFNHL------NLSHNLLVSLEQPYSISD-LTSLSVLDLHSNQIQGKI 593
                   I   +   L       L+ N L SL  P  + D LT+L  L L  NQ+Q  +
Sbjct: 77  -------DIS--ALKELTNLTYLILTGNQLQSL--PNGVFDKLTNLKELVLVENQLQ-SL 124

Query: 594 PPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLD 653
           P                        G F  L                      TNL  L+
Sbjct: 125 PD-----------------------GVFDKL----------------------TNLTYLN 139

Query: 654 LSYNYLSGMIPTCLINMSDS--QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEG 711
           L++N L  +       + D    L  L+L  N L       F     L+ L L  NQL+ 
Sbjct: 140 LAHNQLQSLPK----GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195

Query: 712 MVPK-SLANCSVLEILDLGNNQFD 734
            VP       + L+ + L +N +D
Sbjct: 196 -VPDGVFDRLTSLQYIWLHDNPWD 218

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 476 QRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSD 535
           +   ++  L L  +R        +      L  LS  +  L++I NL K  KL  L+LSD
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSD 73

Query: 536 NQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQI 589
           N++SG     L +    +  HLNLS N +  L     +  L +L  LDL + ++
Sbjct: 74  NRVSG-GLEVLAE-KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 387 DLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASS-SLLDTLDLSDNNLEGP 445
           D S +N G  +     E   ++ L   +      +T I+N    + L  L+LSDN + G 
Sbjct: 25  DNSRSNEG-KLEGLTDEFEELEFLSTINVG----LTSIANLPKLNKLKKLELSDNRVSGG 79

Query: 446 IPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYN 489
           + +   +  NL  L LS NK      ++ +++L NL  LDL   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 423 EISNASSSLLDTLDLSDN-NLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNL 481
           E+ N + S +  L L ++ + EG +     E + L+ L   +        +  + +L  L
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKL 66

Query: 482 FRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCK---LSAIPNLRKQTKLYHLDLSDNQI 538
            +L+LS NR++          P  LT L+L+  K   LS I  L+K   L  LDL + ++
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

Query: 539 S 539
           +
Sbjct: 126 T 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 28/135 (20%), Positives = 41/135 (30%), Gaps = 29/135 (21%)

Query: 235 DFSNLTSLYLSSCGL-HGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293
             S++  L L +     G       +   LE L      L   S+ +  +   L+ L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELS 72

Query: 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGP--IPS 351
               SG L    +   NL+                        +L++S N       I  
Sbjct: 73  DNRVSGGLEVLAEKCPNLT------------------------HLNLSGNKIKDLSTIEP 108

Query: 352 LHMFRNLAYLDLSYN 366
           L    NL  LDL   
Sbjct: 109 LKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 30/137 (21%)

Query: 158 QNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSV 217
           +  ++++EL LD    +   +E    L+    +L+ LS     L+     S++NL  L+ 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLE---GLTDEFEELEFLSTINVGLT-----SIANLPKLN- 64

Query: 218 IRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL-LQG 276
                                L  L LS   + G       + P L  L+LS N++    
Sbjct: 65  --------------------KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

Query: 277 SLPDFHQNLSLETLILS 293
           ++    +  +L++L L 
Sbjct: 105 TIEPLKKLENLKSLDLF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 848 SIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT 907
            +D SR+N EG +       + L  L+  +  LT SI +L   L +++ L+LS N +SG 
Sbjct: 23  VLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SIANL-PKLNKLKKLELSDNRVSGG 79

Query: 908 IPAQLASLNFLSVLNLSYNHL 928
           +         L+ LNLS N +
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 13/122 (10%)

Query: 78  SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLS 137
           +   ++ L L  +  N  ++         L  L+  N G    I   +  + +L  L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 138 GMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLS 197
                          L  L +    L  L L G  I    +   + L  L   L+ L L 
Sbjct: 73  DNRVSGG--------LEVLAEKCPNLTHLNLSGNKIK--DLSTIEPLKKL-ENLKSLDLF 121

Query: 198 GC 199
            C
Sbjct: 122 NC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQF 733
           +L  L+     L  T  A  P    L+ L+L+ N++ G +      C  L  L+L  N+ 
Sbjct: 43  ELEFLSTINVGL--TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 734 DD-TFPCWVKNASRLHVLILRSN 755
            D +    +K    L  L L + 
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG-TIPAQLASLNFLSVLNLSY 925
           L  L  L LS N ++G +  L      +  L+LS N +   +    L  L  L  L+L  
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 926 N 926
            
Sbjct: 123 C 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFA 118
           LD S  +       +     L+    L+        T I + L  L  L  L LS+   +
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELE---FLSTINVGL--TSI-ANLPKLNKLKKLELSDNRVS 77

Query: 119 GQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDG 170
           G + +       L  L+LSG        K+++ +    L+ L  L+ L L  
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGN-------KIKDLSTIEPLKKLENLKSLDLFN 122

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 59.0 bits (143), Expect = 4e-09
 Identities = 49/261 (18%), Positives = 85/261 (32%), Gaps = 36/261 (13%)

Query: 83  QSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFV 142
           + L+  F  +           L++L  LNL+         +     T +  +  SG + +
Sbjct: 50  ELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVR------MTPVKCTVVAAVLGSGRHAL 103

Query: 143 RAPLKLENPNLSG-----LLQNLAELRELYLDGVNISAPGIEW-CQALSSLVPKLQVLSL 196
              + L +  L       LL      R+L L   ++     +     L     ++  L L
Sbjct: 104 DE-VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRL 162

Query: 197 SGCFLSGP----VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF----SNLTSLYLSSCG 248
           S   L+      +   L+   S++ + L    L     E LA        L  L ++  G
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222

Query: 249 LHG----AFPEKILQLPTLETLDLSYNEL-------LQGSLPDFHQNLSLETLILSATNF 297
                  A      + P+LE L L +NEL       L+           +   +   T  
Sbjct: 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

Query: 298 S----GILPDSIKNLKNLSRV 314
           S     IL +  +NL +  R 
Sbjct: 283 SEYWSVILSEVQRNLNSWDRA 303

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 43/229 (18%)

Query: 356 RNLAYLDLSYNIFTGGISSIGWEQL--------LNLFHVDLSHNNLGGSIPQSLFE-LPM 406
            +L  L+L+       ++ +    +          L  V+L+   L  +  ++L      
Sbjct: 72  SSLRQLNLAGV----RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLR 127

Query: 407 VQHLLLADNQF-DGHVTEISNA---SSSLLDTLDLSDNNL--EGPIPLS--FFELKNLKI 458
            + L L  N        ++ +        + TL LS+N L   G   L        ++  
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 459 LLLSSNKF--VGTIEL-DAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCK 515
           L L        G   L   + R R L  L+++YN     A  +            LA   
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA------------LARA- 234

Query: 516 LSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLL 564
                  R+   L  L L  N++S E    L  +G  +     +  +L 
Sbjct: 235 ------AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 12/120 (10%)

Query: 628 FSFSKNSLTGVIPESICNA-TNLLVLDLSYNYLS--GMIPTC-LINMSDSQLGVLNLRRN 683
            + +   L      ++         L L  N L          L+     Q+  L L  N
Sbjct: 106 VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN 165

Query: 684 NLNGT----VSATFPANCSLRTLDLNGNQL--EGMVP--KSLANCSVLEILDLGNNQFDD 735
            L       +      N S+  L L    L  EG+      L     L+ L++  N   D
Sbjct: 166 PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 18/136 (13%)

Query: 645 NATNLLVLDLSYNYL--SGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATF-----PANC 697
           +   +  L LS N L  +G+         ++ +  L+L    L G             N 
Sbjct: 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL-GDEGLELLAAQLDRNR 211

Query: 698 SLRTLDLNGNQL--EGMVP--KSLANCSVLEILDLGNNQFDDTFPCW------VKNASRL 747
            L+ L++  N       +   ++      LE+L L  N+                     
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271

Query: 748 HVLILRSNNFFGNISC 763
            V+ L           
Sbjct: 272 VVVSLTEGTAVSEYWS 287

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 52/351 (14%), Positives = 99/351 (28%), Gaps = 69/351 (19%)

Query: 153 LSGLLQNLAELRELYLDGVNISAPGIEW-CQALSSLVPKLQVLSLSGCFLSGPVDPSL-- 209
           +         +  L L   N+ +       QA ++    +  L+LSG  L       L  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 210 ---SNLRSLSVIRLDMNDLYSPVPEFLADF-----SNLTSLYLSSCGLHGAFPEKILQL- 260
              +   +++ + L  N L     + L          +T L L           +  Q  
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 261 ----PTLETLDLSYNEL-------LQGSLPDFHQNLSLETLILS--------ATNFSGIL 301
                ++ +L+L  N+L       L   L       ++ +L L             +  L
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILA--AIPANVNSLNLRGNNLASKNCAELAKFL 191

Query: 302 PDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQ--------LVYLDMSFNHFSGP----- 348
                ++ +L      L   N     S ++L+         +V L++  N   GP     
Sbjct: 192 ASIPASVTSL-----DLSA-NLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245

Query: 349 IPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLL-------NLFHVDLSHNNLGGSIPQSL 401
                  ++L  + L Y+I    +S    + L         +  VD +   +  S    +
Sbjct: 246 KLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304

Query: 402 FELPM-----VQHLLLADNQFDGHVTEISNASS----SLLDTLDLSDNNLE 443
             L            L +          +N         L     +   L 
Sbjct: 305 SNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 62/374 (16%), Positives = 108/374 (28%), Gaps = 86/374 (22%)

Query: 382 NLFHVDLSHNNLGGSIPQSLFEL-----PMVQHLLLADNQF-DGHVTEISNA---SSSLL 432
            +  +DLS NNL       L +        V  L L+ N     +  E+        + +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 433 DTLDLSDNNL--EGPIPLSFF---ELKNLKILLLSSNKF--VGTIEL-DAIQRL-RNLFR 483
            +L+LS N L  +    L          + +L L  N F    + E   A   L  ++  
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 484 LDLSYNRL----AVVAGSSVYCFPPLLTTLSLASCKL---------SAIPNLRKQTKLYH 530
           L+L  N L    +      +   P  + +L+L    L           + ++     +  
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI--PASVTS 200

Query: 531 LDLSDNQISGEIPNWLWKIGKD---SFNHLNLSHNLLVSLEQPY---SISDLTSLSVLDL 584
           LDLS N +  +    L  I          LNL  N L              L  L  + L
Sbjct: 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 585 HSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESIC 644
             + ++                          ++      ++               +  
Sbjct: 261 DYDIVK--------------------------NMSKEQCKALG-------------AAFP 281

Query: 645 NATNLLVLDLSYNYL--SGMIPTC-LINMSDSQLGVLNLRRNNL-----NGTVSATFPAN 696
           N   ++++D +   +  S  IP   LI     +  V +L    L     + T        
Sbjct: 282 NIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341

Query: 697 CSLRTLDLNGNQLE 710
             LR        L 
Sbjct: 342 DELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 54/349 (15%), Positives = 98/349 (28%), Gaps = 52/349 (14%)

Query: 94  ATEIPSGLGNLTNLTTLNLSN-----AGFAGQIPIQVSGMTRLVTLDLSGMYF-VRAPLK 147
           +  +         +T+L+LS            I    +    + +L+LSG     +   +
Sbjct: 11  SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70

Query: 148 LENPNLSGLLQNLAELRELYLDGVNISAPGIEW-CQALSSLVPKLQVLSLSGCFLSGPVD 206
           L    +  L    A +  L L G  +S    +   + L+++   + VL L     S    
Sbjct: 71  L----VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126

Query: 207 PSLSNL-----RSLSVIRLDMNDLYSPVPEFLADF-----SNLTSLYLSSCGLHGAFPEK 256
                       S++ + L  NDL     + L        +N+ SL L    L      +
Sbjct: 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE 186

Query: 257 ILQL-----PTLETLDLSYNELLQGSLPDF-----HQNLSLETLILSATNFSG----ILP 302
           + +       ++ +LDLS N L   S  +           + +L L      G     L 
Sbjct: 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246

Query: 303 DSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQ-------LVYLDMSFNHFSGPIPSL--- 352
               +LK+L  V                 L         ++ +D +              
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306

Query: 353 ---HMFRNLAYLDLSYNIFTGGISSIGWEQLLN----LFHVDLSHNNLG 394
               +        L               + LN    L     +   L 
Sbjct: 307 LIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 45/272 (16%), Positives = 83/272 (30%), Gaps = 51/272 (18%)

Query: 522 LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSF---NHLNLSHNLLVSLEQPYSISDL-- 576
                 +  LDLS N +       L +   ++      LNLS N L   +    +  +  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILA 76

Query: 577 ---TSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKN 633
               +++ L+L  N +                S +    ++     +   L +      N
Sbjct: 77  AIPANVTSLNLSGNFLS-------------YKSSDELVKTLAAIPFTITVLDL----GWN 119

Query: 634 SLTGVIPESICNA-----TNLLVLDLSYNYLS--GMIPTC-LINMSDSQLGVLNLRRNNL 685
             +         A      ++  L+L  N L          ++    + +  LNLR NNL
Sbjct: 120 DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 686 NGTVSATF------PANCSLRTLDLNGNQLEGMVPKSLA-----NCSVLEILDLGNNQFD 734
             + +             S+ +LDL+ N L       LA       + +  L+L  N   
Sbjct: 180 -ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 735 DT----FPCWVKNASRLHVLILRSNNFFGNIS 762
                       +   L  + L   +   N+S
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYL-DYDIVKNMS 269

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 61/319 (19%), Positives = 109/319 (34%), Gaps = 79/319 (24%)

Query: 261 PTLETLDLSYNELLQGSLPDF-----HQNLSLETLILSATNFSGILPDSIKNLKNLSRVE 315
             + +LDLS N L   S  +      +   S+ +L LS  +       +   L  +    
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDELVQI---- 74

Query: 316 FYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGP-IPSL-----HMFRNLAYLDLSYNIFT 369
             L              + +  L++S N  S      L      +   +  LDL +N   
Sbjct: 75  --LAAIP----------ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN--- 119

Query: 370 GGISSIGWEQL--------LNLFHVDLSHNNLGG----SIPQSLFELPM-VQHLLLADNQ 416
              SS    +          ++  ++L  N+LG      + Q L  +P  V  L L  N 
Sbjct: 120 -DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 417 F-DGHVTEISNASSSL---LDTLDLSDNNL--EGPIPLSFFELKN---LKILLLSSNKF- 466
               +  E++   +S+   + +LDLS N L  +    L++        +  L L  N   
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 467 -VGTIEL-DAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCK--LSAIPNL 522
                 L      L++L  + L Y+ +                 +S   CK   +A PN+
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIV---------------KNMSKEQCKALGAAFPNI 283

Query: 523 RKQTKLYHLDLSDNQISGE 541
           +K   +  +D +  +I   
Sbjct: 284 QK---IILVDKNGKEIHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 58/346 (16%), Positives = 109/346 (31%), Gaps = 63/346 (18%)

Query: 647 TNLLVLDLSYNYLSGMIPTCLINM---SDSQLGVLNLRRNNLNGT-----VSATFPANCS 698
             +  LDLS N L  +    LI     + + +  LNL  N+L        V        +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 699 LRTLDLNGNQLEGMVPKSLA-----NCSVLEILDLGNNQFDDTFPCWV-----KNASRLH 748
           + +L+L+GN L       L          + +LDLG N F                + + 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 749 VLILRSNNFFGNISC-------PRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVD 801
            L LR N+  G  S             +   +  ++L  N  +                 
Sbjct: 142 SLNLRGND-LGIKSSDELIQILAAIPAN---VNSLNLRGNNLA----------------S 181

Query: 802 EGRSQ--SELKHL--QYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFE 857
           +  ++    L  +      L+LS          +   L    + I N   S++   N   
Sbjct: 182 KNCAELAKFLASIPASVTSLDLSANLLGLK---SYAELAYIFSSIPNHVVSLNLCLNCLH 238

Query: 858 GPIPEEMGLL----QSLCALNLSHNALTG-------SIPSLIGNLREIESLDLSMNNLSG 906
           GP  E + LL    + L  + L ++ +         ++ +   N+++I  +D +   +  
Sbjct: 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

Query: 907 TIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRL 952
           +    +++L            L+ +     Q            D L
Sbjct: 299 SHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 44/213 (20%)

Query: 82  LQSLNLAFNMFN---ATEIPSGLGNL-TNLTTLNLSN-----AGFAGQIPIQVSGMTRLV 132
           + SLNL  N        E+   L ++  ++T+L+LS        +A    I  S    +V
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 133 TLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQ 192
           +L+L         L+     L  L  +L  L+ +YLD   +     E C+AL +      
Sbjct: 229 SLNLCLNCLHGPSLEN----LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA------ 278

Query: 193 VLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF-----SNLTSLYLSSC 247
                          +  N++ + ++  +  +++      +++             L + 
Sbjct: 279 ---------------AFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323

Query: 248 GL----HGAFPEKILQLP-TLETLDLSYNELLQ 275
            L          + L +P  L     +   LL+
Sbjct: 324 CLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 36/135 (26%)

Query: 457 KILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL--LTTLSLASC 514
             L L  N+F  T+    +   ++L  +DLS NR++ +   S   F  +  L TL L+  
Sbjct: 34  TELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTL---SNQSFSNMTQLLTLILSYN 88

Query: 515 KLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYS 572
           +L  IP         L  L L  N IS  +P       + +FN                 
Sbjct: 89  RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVP-------EGAFN----------------- 123

Query: 573 ISDLTSLSVLDLHSN 587
             DL++LS L + +N
Sbjct: 124 --DLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 18/92 (19%)

Query: 507 TTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNH------LNL 559
           T L L   + + +P  L     L  +DLS+N+IS  + N        SF++      L L
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSN-------QSFSNMTQLLTLIL 85

Query: 560 SHNLLVSLEQPYSISD-LTSLSVLDLHSNQIQ 590
           S+N L  +  P    D L SL +L LH N I 
Sbjct: 86  SYNRLRCI--PPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 5/103 (4%)

Query: 633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSAT 692
           N  T ++P+ + N  +L ++DLS N +S +      NM+  QL  L L  N L      T
Sbjct: 41  NQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT--QLLTLILSYNRLRCIPPRT 97

Query: 693 FPANCSLRTLDLNGNQLEGMVPK-SLANCSVLEILDLGNNQFD 734
           F    SLR L L+GN +  +VP+ +  + S L  L +G N   
Sbjct: 98  FDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 18/114 (15%)

Query: 433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
             LDL  N+L+      F EL +L  L L  NK   ++      +L +L  L+LS N+L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 493 VVAGSSVYCFPP-------LLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQ 537
            +        P         L  L+L + +L ++P+    K T+L  L L  NQ
Sbjct: 90  SL--------PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 35/138 (25%)

Query: 457 KILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVV-AGSSVYCFPPLLTTLSLASCK 515
             L L +N    ++       L +L +L L  N+L  +  G  V+     LT L+L++ +
Sbjct: 31  TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNG--VFNKLTSLTYLNLSTNQ 87

Query: 516 LSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSI 573
           L ++PN    K T+L  L L+ NQ                          L SL  P  +
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQ--------------------------LQSL--PDGV 119

Query: 574 SD-LTSLSVLDLHSNQIQ 590
            D LT L  L L+ NQ++
Sbjct: 120 FDKLTQLKDLRLYQNQLK 137

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 17/113 (15%)

Query: 433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
             L L DN +    P  F  L NLK L L SN+    + +     L  L  LDL  N+L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 493 VVAGSSVYCFPP-------LLTTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQ 537
           V+        P         L  L +   KL+ +P  + + T L HL L  NQ
Sbjct: 102 VL--------PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 38/139 (27%)

Query: 457 KILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVV-AGSSVYCFPPL--LTTLSLAS 513
           +IL L  N+    +E      L NL  L L  N+L  +  G     F  L  LT L L +
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVG----VFDSLTQLTVLDLGT 97

Query: 514 CKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPY 571
            +L+ +P+    +   L  L +  N+                          L  L  P 
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNK--------------------------LTEL--PR 129

Query: 572 SISDLTSLSVLDLHSNQIQ 590
            I  LT L+ L L  NQ++
Sbjct: 130 GIERLTHLTHLALDQNQLK 148

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.0 bits (113), Expect = 1e-05
 Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 23/228 (10%)

Query: 715 KSLANCSVLEILDLGNNQFDDTFPCWVKN--ASRLHVLILRSNNFFGNISCPRYNVSWPM 772
                   L+ + +G   ++      + +               F+G+I      +SW  
Sbjct: 101 LKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISW-- 158

Query: 773 LQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTI 832
           ++ +DL+       L    LLN   +      S  +      + L +      D++   I
Sbjct: 159 IEQVDLSPV-----LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDI 213

Query: 833 KGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQ-----SLCALNLSHNALTGSIPSL 887
            G ++   + L ++  +      F+G +     L       +L  L +        +  +
Sbjct: 214 LGSDLPNLEKLVLY--VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271

Query: 888 IGN---LREIESLDLSMNNLSGT----IPAQLASLNFLSVLNLSYNHL 928
                 L ++E++D+S   L+      +   +  +  L  +N+ YN+L
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 2e-05
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 18/138 (13%)

Query: 152 NLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSN 211
           NLS   +    L+ L +    +    +E    L S +P L+ L L         D  ++ 
Sbjct: 184 NLSIGKKPRPNLKSLEIISGGLPDSVVED--ILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241

Query: 212 LR---------SLSVIRLDMNDLYSPVPEFLADF---SNLTSLYLSSCGLHG----AFPE 255
            R         +L  + +   +  + V E   +      L ++ +S+  L         +
Sbjct: 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301

Query: 256 KILQLPTLETLDLSYNEL 273
            + ++  L+ +++ YN L
Sbjct: 302 HVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 18/183 (9%)

Query: 60  DLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPS-GLGNLTNLTTLNL----SN 114
            L+   I    + S        L+SL +       + +      +L NL  L L     +
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED 232

Query: 115 AGFAGQIP-----IQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLD 169
            GF G +              L  L +       A  +     +      L +L  + + 
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVD-----AEEQNVVVEMFLESDILPQLETMDIS 287

Query: 170 GVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPV 229
              ++  G          +  L+ +++   +LS   D     L+    +++D++D     
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS---DEMKKELQKSLPMKIDVSDSQEYD 344

Query: 230 PEF 232
            ++
Sbjct: 345 DDY 347

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 3e-05
 Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 20/158 (12%)

Query: 350 PSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLF--ELPMV 407
           P L     L  L +          SIG +   NL  +++    L  S+ + +   +LP +
Sbjct: 166 PVLDAMPLLNNLKIK----GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 408 QHLLLADNQ----FDGHVTEISNASSS----LLDTLDLSDNNLEGPIPLSFFE---LKNL 456
           + L+L        FDG +       S      L  L + D   +  +   F E   L  L
Sbjct: 222 EKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL 281

Query: 457 KILLLSSNKF--VGTIEL-DAIQRLRNLFRLDLSYNRL 491
           + + +S+      G   L D + ++++L  +++ YN L
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 28/184 (15%), Positives = 66/184 (35%), Gaps = 22/184 (11%)

Query: 246 SCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSI 305
           S          +  +P L  L +     L  S+       +L++L + +      + + I
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIKGTNNL--SIGKK-PRPNLKSLEIISGGLPDSVVEDI 213

Query: 306 --KNLKNLSRVEFYLCNFNGPIPTSMSDLS---------QLVYLDMSFNHFSGPIPSL-- 352
              +L NL ++  Y+   +      M+             L +L +        +  +  
Sbjct: 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273

Query: 353 --HMFRNLAYLDLSYNIFTG-GISSI--GWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPM 406
              +   L  +D+S  + T  G   +    +++ +L  +++ +N L   + + L + LPM
Sbjct: 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPM 333

Query: 407 VQHL 410
              +
Sbjct: 334 KIDV 337

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 457 KILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVV-AGSSVYCFPPL--LTTLSLAS 513
             LLL+ N+           RL +L +L+L  N+L  +   +    F     +  L L  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA----FEGASHIQELQLGE 87

Query: 514 CKLSAIPN--LRKQTKLYHLDLSDNQIS 539
            K+  I N       +L  L+L DNQIS
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 19/114 (16%)

Query: 483 RLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISG 540
            L L+ N L  ++   ++   P L  L L   +L+ I        + +  L L +N+I  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK- 91

Query: 541 EIPNWLWKIGKDSFN------HLNLSHNLLVSLEQPYSISD-LTSLSVLDLHSN 587
           EI N         F        LNL  N +  +       + L SL+ L+L SN
Sbjct: 92  EISN-------KMFLGLHQLKTLNLYDNQISCV--MPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 19/114 (16%)

Query: 360 YLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQ-- 416
            L L+ N      S   + +L +L  ++L  N L   I  + FE    +Q L L +N+  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKIK 91

Query: 417 ------FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSN 464
                 F G + +        L TL+L DN +   +P SF  L +L  L L+SN
Sbjct: 92  EISNKMFLG-LHQ--------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1005
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.26
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.84
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.69
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.57
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.72
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.93
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.2

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.7e-90  Score=847.95  Aligned_cols=716  Identities=30%  Similarity=0.439  Sum_probs=480.4

Q ss_pred             ccccCCCcHHHHHHHHHHhhhCCCCCCCcccccCCCCCCCCcccceeEECCCCCEEEEEcCCCCcccc---cCCCccccc
Q 047927            2 VLVSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAG---IDNSSSLFS   78 (1005)
Q Consensus         2 ~~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~---~~~~~~l~~   78 (1005)
                      +++.+++.++||+|||+||+++. ||.   ++++|+.+.+||+|.||+|+ .+||++|||+++.+.|.   +  ++++.+
T Consensus         3 ~~~~~~~~~~~~~all~~k~~~~-~~~---~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l--~~~l~~   75 (768)
T 3rgz_A            3 QASPSQSLYREIHQLISFKDVLP-DKN---LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAV--SSSLLS   75 (768)
T ss_dssp             -----CCHHHHHHHHHHHHTTCS-CTT---SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHH--HHHTTT
T ss_pred             cCccccCCHHHHHHHHHHHhhCC-Ccc---cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCcc--ChhHhc
Confidence            45667778899999999999997 453   78999878899999999998 68999999999999887   6  678999


Q ss_pred             ccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcc--cccCCCCCcEEeCCCcccccCccccCCCChhhh
Q 047927           79 LKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPI--QVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL  156 (1005)
Q Consensus        79 l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~--~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~  156 (1005)
                      +++|++++++.+.+.  .+|+.++++++|++|||++|.+.+.+|.  .++++++|++|++++|.+..             
T Consensus        76 L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-------------  140 (768)
T 3rgz_A           76 LTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF-------------  140 (768)
T ss_dssp             CTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC-------------
T ss_pred             cCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC-------------
Confidence            999999999998763  3678999999999999999999988888  88999999999888876432             


Q ss_pred             hhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccc-cCCCCCcEEECCCCCCCCCcchh---
Q 047927          157 LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSL-SNLRSLSVIRLDMNDLYSPVPEF---  232 (1005)
Q Consensus       157 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~~---  232 (1005)
                                                                     ..|..+ .++++|++|++++|.+.+..|..   
T Consensus       141 -----------------------------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  173 (768)
T 3rgz_A          141 -----------------------------------------------PGKVSGGLKLNSLEVLDLSANSISGANVVGWVL  173 (768)
T ss_dssp             -----------------------------------------------CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred             -----------------------------------------------cCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence                                                           222222 45556666666666665555544   


Q ss_pred             ccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCC
Q 047927          233 LADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLS  312 (1005)
Q Consensus       233 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  312 (1005)
                      +.++++|++|++++|.+++..|.  ..+++|++|++++|.+                        ++..|. ++++++|+
T Consensus       174 ~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l------------------------~~~~~~-l~~l~~L~  226 (768)
T 3rgz_A          174 SDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNF------------------------STGIPF-LGDCSALQ  226 (768)
T ss_dssp             TTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCC------------------------CSCCCB-CTTCCSCC
T ss_pred             hccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcC------------------------CCCCcc-cccCCCCC
Confidence            56666666666666666654432  5556666666665543                        222222 34444444


Q ss_pred             EEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCc
Q 047927          313 RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNN  392 (1005)
Q Consensus       313 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  392 (1005)
                      +|++++|.+.+.+|..++.+++|++|++++|.+.+.++.. .+++|++|++++|.+++.+|......+++|++|++++|.
T Consensus       227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~  305 (768)
T 3rgz_A          227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH  305 (768)
T ss_dssp             EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred             EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence            4444444444444444444444444444444444433333 334555555555555555554422234667777777777


Q ss_pred             CCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCcc-ccCcCCCcEEECCCCcceeccc
Q 047927          393 LGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLS-FFELKNLKILLLSSNKFVGTIE  471 (1005)
Q Consensus       393 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~  471 (1005)
                      +++.+|..+..+++|++|++++|.+.+                         .+|.. +..+++|++|++++|++.+.++
T Consensus       306 l~~~~p~~~~~l~~L~~L~L~~n~l~~-------------------------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p  360 (768)
T 3rgz_A          306 FYGAVPPFFGSCSLLESLALSSNNFSG-------------------------ELPMDTLLKMRGLKVLDLSFNEFSGELP  360 (768)
T ss_dssp             EEECCCGGGGGCTTCCEEECCSSEEEE-------------------------ECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred             CCCccchHHhcCCCccEEECCCCcccC-------------------------cCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence            666666666666666666666555443                         33332 4445555555555555554444


Q ss_pred             hhHHHhcC-CCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhc
Q 047927          472 LDAIQRLR-NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIG  550 (1005)
Q Consensus       472 ~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~  550 (1005)
                      . .+..++ +|++|++++|.+.......+.                     ...+++|++|++++|.+++.+|..+..  
T Consensus       361 ~-~l~~l~~~L~~L~Ls~N~l~~~~~~~~~---------------------~~~~~~L~~L~L~~n~l~~~~p~~l~~--  416 (768)
T 3rgz_A          361 E-SLTNLSASLLTLDLSSNNFSGPILPNLC---------------------QNPKNTLQELYLQNNGFTGKIPPTLSN--  416 (768)
T ss_dssp             T-THHHHTTTCSEEECCSSEEEEECCTTTT---------------------CSTTCCCCEEECCSSEEEEECCGGGGG--
T ss_pred             H-HHHhhhcCCcEEEccCCCcCCCcChhhh---------------------hcccCCccEEECCCCccccccCHHHhc--
Confidence            2 233443 555555555544432111100                     011345566666666655555544322  


Q ss_pred             CCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEe
Q 047927          551 KDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSF  630 (1005)
Q Consensus       551 ~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l  630 (1005)
                                               +++|++|++++|++++.+|                     ..+. .++.|++|++
T Consensus       417 -------------------------l~~L~~L~Ls~N~l~~~~p---------------------~~l~-~l~~L~~L~L  449 (768)
T 3rgz_A          417 -------------------------CSELVSLHLSFNYLSGTIP---------------------SSLG-SLSKLRDLKL  449 (768)
T ss_dssp             -------------------------CTTCCEEECCSSEEESCCC---------------------GGGG-GCTTCCEEEC
T ss_pred             -------------------------CCCCCEEECcCCcccCccc---------------------HHHh-cCCCCCEEEC
Confidence                                     3445555555555544333                     1222 2445555666


Q ss_pred             cCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec
Q 047927          631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE  710 (1005)
Q Consensus       631 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  710 (1005)
                      ++|.+++.+|..+..+++|++|++++|++++.+|..+..++  +|++|++++|++++.+|..+..+++|++|+|++|+++
T Consensus       450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT--TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC--CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence            66666666666677777777777777777777777777766  6777777777777777777777777777777777777


Q ss_pred             ccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCc----------------------CCcccCCCCCCC
Q 047927          711 GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNN----------------------FFGNISCPRYNV  768 (1005)
Q Consensus       711 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~----------------------l~~~~~~~~~~~  768 (1005)
                      +.+|..+..+++|++|++++|+++|.+|.++.....+..+++..+.                      +.+..  +..+.
T Consensus       528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  605 (768)
T 3rgz_A          528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR--SEQLN  605 (768)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC--GGGGG
T ss_pred             CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc--chhhh
Confidence            7777777777777777777777777777776665555444333210                      11111  22333


Q ss_pred             CCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceE
Q 047927          769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS  848 (1005)
Q Consensus       769 ~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  848 (1005)
                      .++.++.++++.|.+.|.+|..                                                 +..++.|+.
T Consensus       606 ~l~~~~~~~l~~~~~~g~~~~~-------------------------------------------------~~~l~~L~~  636 (768)
T 3rgz_A          606 RLSTRNPCNITSRVYGGHTSPT-------------------------------------------------FDNNGSMMF  636 (768)
T ss_dssp             GGGGTCCSCTTSCEEEEECCCS-------------------------------------------------CSSSBCCCE
T ss_pred             ccccccccccccceecccCchh-------------------------------------------------hhccccccE
Confidence            3444445555555555555532                                                 124678999


Q ss_pred             EECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcc
Q 047927          849 IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL  928 (1005)
Q Consensus       849 L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  928 (1005)
                      ||||+|+++|.+|++|+++++|++|||++|+++|.||+.++++++|++||||+|+++|.||..++++++|++||+|+|+|
T Consensus       637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCcccccccccccCCCCCCCCCCCCCCCC
Q 047927          929 VGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTN  963 (1005)
Q Consensus       929 ~g~ip~~~~~~~~~~~~~~gn~~lc~~~~~~c~~~  963 (1005)
                      +|.||..+||.+|...+|.||++|||+|+..|...
T Consensus       717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~  751 (768)
T 3rgz_A          717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS  751 (768)
T ss_dssp             EEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred             cccCCCchhhccCCHHHhcCCchhcCCCCcCCCCC
Confidence            99999999999999999999999999998889653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.9e-69  Score=659.85  Aligned_cols=639  Identities=31%  Similarity=0.398  Sum_probs=476.2

Q ss_pred             CCccEEEccCCCCCCC---CCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCcc--ccCCCCCC
Q 047927          189 PKLQVLSLSGCFLSGP---VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPE--KILQLPTL  263 (1005)
Q Consensus       189 ~~L~~L~L~~n~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L  263 (1005)
                      .+++.|+|+++.+.|.   +++++.++++|+.++++.+.+.. +|..++.+++|++|+|++|.+++.+|.  .++++++|
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  128 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL  128 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence            5778888888888887   77888888888888888876532 456788899999999999998888887  88889999


Q ss_pred             CEEeCCCCCCCCCCCCcc-cCCCCCcEEEcccccccccCchh---hccCCCCCEEeecCCccCCCCCccCCCCCCCcEEE
Q 047927          264 ETLDLSYNELLQGSLPDF-HQNLSLETLILSATNFSGILPDS---IKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLD  339 (1005)
Q Consensus       264 ~~L~Ls~n~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  339 (1005)
                      ++|++++|.+.......+ ..+++|++|++++|.+++..|..   +.++++|++|++++|.+.+..+.  ..+++|++|+
T Consensus       129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~  206 (768)
T 3rgz_A          129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLD  206 (768)
T ss_dssp             CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEE
T ss_pred             CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEE
Confidence            999999887643332233 56788888888888888877766   67788888888888887765553  6778888888


Q ss_pred             CcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCccccc
Q 047927          340 MSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG  419 (1005)
Q Consensus       340 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  419 (1005)
                      +++|.+.+.++.+..+++|++|++++|.+++.++.. +..+++|++|++++|.+.+.+|..  .+++|++|++++|++.+
T Consensus       207 Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~  283 (768)
T 3rgz_A          207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG  283 (768)
T ss_dssp             CCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred             CcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCC
Confidence            888887776666666667777777777777666555 667777777777777776655543  56666666666666655


Q ss_pred             ccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcc
Q 047927          420 HVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSV  499 (1005)
Q Consensus       420 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~  499 (1005)
                      .++......+++|++|++++|.+++.+|..+..+++|++|++++|++.+.++...+.                       
T Consensus       284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~-----------------------  340 (768)
T 3rgz_A          284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-----------------------  340 (768)
T ss_dssp             SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT-----------------------
T ss_pred             ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh-----------------------
Confidence            555444444455555555555555555555555555555555555555555544333                       


Q ss_pred             cccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcc
Q 047927          500 YCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSL  579 (1005)
Q Consensus       500 ~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L  579 (1005)
                                              .+++|++|++++|.+++.+|..+....                          ++|
T Consensus       341 ------------------------~l~~L~~L~Ls~n~l~~~~p~~l~~l~--------------------------~~L  370 (768)
T 3rgz_A          341 ------------------------KMRGLKVLDLSFNEFSGELPESLTNLS--------------------------ASL  370 (768)
T ss_dssp             ------------------------TCTTCCEEECCSSEEEECCCTTHHHHT--------------------------TTC
T ss_pred             ------------------------cCCCCCEEeCcCCccCccccHHHHhhh--------------------------cCC
Confidence                                    344555555666665555665554321                          156


Q ss_pred             cEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccc
Q 047927          580 SVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYL  659 (1005)
Q Consensus       580 ~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  659 (1005)
                      ++|++++|.+++.+|....                    ...++.|++|++++|.+++.+|..++.+++|+.|++++|++
T Consensus       371 ~~L~Ls~N~l~~~~~~~~~--------------------~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  430 (768)
T 3rgz_A          371 LTLDLSSNNFSGPILPNLC--------------------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL  430 (768)
T ss_dssp             SEEECCSSEEEEECCTTTT--------------------CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             cEEEccCCCcCCCcChhhh--------------------hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence            6666666666655443210                    01145677788888888888888899999999999999999


Q ss_pred             cccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcch
Q 047927          660 SGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPC  739 (1005)
Q Consensus       660 ~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  739 (1005)
                      ++.+|..+..++  +|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.
T Consensus       431 ~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~  508 (768)
T 3rgz_A          431 SGTIPSSLGSLS--KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK  508 (768)
T ss_dssp             ESCCCGGGGGCT--TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             cCcccHHHhcCC--CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence            999999999988  899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecc-
Q 047927          740 WVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLN-  818 (1005)
Q Consensus       740 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-  818 (1005)
                      +++.+++|++|+|++|+++|.+  |..+..+++|++||+++|+++|.+|..++............      ...+.+.. 
T Consensus       509 ~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~------~~~~~~~~~  580 (768)
T 3rgz_A          509 WIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA------GKRYVYIKN  580 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC------SCEEEEEEC
T ss_pred             HHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc------ccccccccc
Confidence            9999999999999999999887  88899999999999999999999998765332211110000      00000000 


Q ss_pred             --cccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCE
Q 047927          819 --LSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIES  896 (1005)
Q Consensus       819 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~  896 (1005)
                        .............+.+........+..+..++++.|.++|.+|..++.+++|++||||+|+++|.||..++++++|+.
T Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  660 (768)
T 3rgz_A          581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI  660 (768)
T ss_dssp             CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred             ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence              000000001112233333333445667778899999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCC
Q 047927          897 LDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTST  936 (1005)
Q Consensus       897 LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~  936 (1005)
                      |||++|+++|.||++++++++|++||||+|+++|.||...
T Consensus       661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l  700 (768)
T 3rgz_A          661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM  700 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred             EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence            9999999999999999999999999999999999999753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1e-55  Score=538.61  Aligned_cols=595  Identities=23%  Similarity=0.228  Sum_probs=347.6

Q ss_pred             EEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCC
Q 047927          193 VLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE  272 (1005)
Q Consensus       193 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  272 (1005)
                      .++.+++.++. +|..+.  +++++|++++|.+.+..+..|+++++|++|++++|.+++..|..++++++|++|++++|.
T Consensus         8 ~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            8 VADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            45555555543 344333  567777777777666666667777777777777777776666667777777777777776


Q ss_pred             CCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcc
Q 047927          273 LLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSL  352 (1005)
Q Consensus       273 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  352 (1005)
                      +.......|..+++|++|++++|.+++..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  164 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE  164 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred             cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence            65444444666667777777777776666667777777888888777777777777777778888888777776554432


Q ss_pred             c---ccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCC---CCCCCCEEeCcCcccccccccccc
Q 047927          353 H---MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLF---ELPMVQHLLLADNQFDGHVTEISN  426 (1005)
Q Consensus       353 ~---~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~~  426 (1005)
                      .   ...+|++|++++|.+++..+.. +..+++|+.+++.++.+.+.....+.   ..++                    
T Consensus       165 ~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~--------------------  223 (680)
T 1ziw_A          165 LDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS--------------------  223 (680)
T ss_dssp             HGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSC--------------------
T ss_pred             hhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhcc--------------------
Confidence            1   2345666666666665444433 55566666666655554321111100   1234                    


Q ss_pred             cccccCCEEeCCCCccCCCCCccccCcCC--CcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCc
Q 047927          427 ASSSLLDTLDLSDNNLEGPIPLSFFELKN--LKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPP  504 (1005)
Q Consensus       427 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  504 (1005)
                           |++|++++|.+.+..|..+..++.  |+.|++++|++. .++...+..+++|++|++++|.+..+....+. ..+
T Consensus       224 -----L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~  296 (680)
T 1ziw_A          224 -----IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLF  296 (680)
T ss_dssp             -----CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCT
T ss_pred             -----ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhc-CCC
Confidence                 444444444444444444444432  555555555444 22233444455555555555544443322211 111


Q ss_pred             ccceEEcCCccCc------CCC-----CCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCcc
Q 047927          505 LLTTLSLASCKLS------AIP-----NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSI  573 (1005)
Q Consensus       505 ~L~~L~L~~n~l~------~l~-----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~  573 (1005)
                      +|+.|++++|...      .+|     .+..+++|++|++++|.+.+..+..                           +
T Consensus       297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------------------~  349 (680)
T 1ziw_A          297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM---------------------------F  349 (680)
T ss_dssp             TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT---------------------------T
T ss_pred             CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH---------------------------h
Confidence            2222222222111      111     1445555556666655555433322                           3


Q ss_pred             ccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhc--ccCceEEEEecCCcccccCChhhhccCCCCe
Q 047927          574 SDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGS--FMSLSIFFSFSKNSLTGVIPESICNATNLLV  651 (1005)
Q Consensus       574 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~--~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~  651 (1005)
                      ..+++|++|++++|.+....                    ++...+.  ..+.++.|++++|++++..|..+..+++|+.
T Consensus       350 ~~l~~L~~L~Ls~n~~~~~~--------------------l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  409 (680)
T 1ziw_A          350 TGLINLKYLSLSNSFTSLRT--------------------LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV  409 (680)
T ss_dssp             TTCTTCCEEECTTCBSCCCE--------------------ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccccCCcEEECCCCchhhhh--------------------cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence            33456666666666543211                    0000000  0134555556666665555556666666666


Q ss_pred             EEccCccccccCC-chhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec--ccCcccccCCCCCCEEEC
Q 047927          652 LDLSYNYLSGMIP-TCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE--GMVPKSLANCSVLEILDL  728 (1005)
Q Consensus       652 L~Ls~N~l~~~~p-~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L  728 (1005)
                      |++++|++++.+| ..+..++  +|++|++++|++.+..+..|..+++|++|++++|.+.  +..|..|..+++|+.|++
T Consensus       410 L~L~~N~l~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L  487 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEWRGLE--NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL  487 (680)
T ss_dssp             EECCSSCCEEECCSGGGTTCT--TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred             EeCCCCcCccccCcccccCcc--cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence            6666666655444 3455554  5555666665555555555555555555555555554  344555555555555555


Q ss_pred             CCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhh
Q 047927          729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSE  808 (1005)
Q Consensus       729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~  808 (1005)
                      ++|++++..|.+|+.+++|++|++++|++++..  +.                    .+|..                  
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~--------------------~~~~~------------------  527 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLW--KH--------------------ANPGG------------------  527 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG--ST--------------------TSTTS------------------
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCccccc--hh--------------------hccCC------------------
Confidence            555555555555555555555555555544321  00                    00100                  


Q ss_pred             hchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhh
Q 047927          809 LKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLI  888 (1005)
Q Consensus       809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~  888 (1005)
                                                 ....+..++.|+.|+|++|+++...+..|+++++|++|||++|++++..|..+
T Consensus       528 ---------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  580 (680)
T 1ziw_A          528 ---------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF  580 (680)
T ss_dssp             ---------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ---------------------------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence                                       00001246778899999999985444579999999999999999997777778


Q ss_pred             hcCCCCCEEeCCCCcCcccCccccc-CCCCCCeEEccCCcccccCCC
Q 047927          889 GNLREIESLDLSMNNLSGTIPAQLA-SLNFLSVLNLSYNHLVGRIPT  934 (1005)
Q Consensus       889 ~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~  934 (1005)
                      .++++|+.|||++|++++.+|..+. .+++|+.+++++|++.|.++.
T Consensus       581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            9999999999999999999998887 789999999999999998875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.7e-54  Score=523.98  Aligned_cols=583  Identities=20%  Similarity=0.198  Sum_probs=410.4

Q ss_pred             CCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEEC
Q 047927          261 PTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDM  340 (1005)
Q Consensus       261 ~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L  340 (1005)
                      +++++|++++|.+.......|..+++|++|++++|.+++..|..++++++|++|++++|.+.+..+..|+.+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            34444444444433322223444444444444444455555666666666666666666666544445666666666666


Q ss_pred             cCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccc
Q 047927          341 SFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGH  420 (1005)
Q Consensus       341 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~  420 (1005)
                      ++|.+.+..+.                        .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus       105 ~~n~l~~~~~~------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A          105 MSNSIQKIKNN------------------------PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             CSSCCCCCCSC------------------------TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CCCccCccChh------------------------HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            66665533321                        144555555555555555555555555566666666666665544


Q ss_pred             ccccc-ccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHH--HhcCCCCeEeccCCeeeEecCC
Q 047927          421 VTEIS-NASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAI--QRLRNLFRLDLSYNRLAVVAGS  497 (1005)
Q Consensus       421 ~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~  497 (1005)
                      .+... ....++|++|++++|.+++..|..+..+++|+.|+++++.+.+.......  -..++|+.|++++|.+......
T Consensus       161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  240 (680)
T 1ziw_A          161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT  240 (680)
T ss_dssp             CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred             CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence            33322 22346688888888888888888899999999999999887633221111  1347888899998888877655


Q ss_pred             cccccC-cccceEEcCCccCcCCCC--CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccc
Q 047927          498 SVYCFP-PLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSIS  574 (1005)
Q Consensus       498 ~~~~~~-~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  574 (1005)
                      .+.... +.|++|++++|+++.++.  +..+++|++|++++|.+.+..|..                           +.
T Consensus       241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------------~~  293 (680)
T 1ziw_A          241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS---------------------------LH  293 (680)
T ss_dssp             TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT---------------------------TT
T ss_pred             HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh---------------------------hc
Confidence            543332 347777777777766543  667777777777777766544443                           34


Q ss_pred             cCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEc
Q 047927          575 DLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDL  654 (1005)
Q Consensus       575 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L  654 (1005)
                      .+++|++|++++|...+.++..  .+.           .++...+..++.|++|++++|.+++..+..|..+++|++|++
T Consensus       294 ~l~~L~~L~L~~~~~~~~~~~~--~lp-----------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  360 (680)
T 1ziw_A          294 GLFNVRYLNLKRSFTKQSISLA--SLP-----------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL  360 (680)
T ss_dssp             TCTTCCEEECTTCBCCC--------CC-----------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCccEEeccchhhhcccccc--ccc-----------ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence            4567777777766554332210  000           011112234778889999999999888888999999999999


Q ss_pred             cCccccc--cCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCc-ccccCCCCCCEEECCCC
Q 047927          655 SYNYLSG--MIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVP-KSLANCSVLEILDLGNN  731 (1005)
Q Consensus       655 s~N~l~~--~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N  731 (1005)
                      ++|.++.  ..+..+..+...+|+.|++++|++++..|..|..+++|++|++++|++++.+| ..|.++++|++|++++|
T Consensus       361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n  440 (680)
T 1ziw_A          361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN  440 (680)
T ss_dssp             TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred             CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence            9998643  22333444432379999999999999999999999999999999999987665 78999999999999999


Q ss_pred             cCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhch
Q 047927          732 QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKH  811 (1005)
Q Consensus       732 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~  811 (1005)
                      ++++..+..|..+++|+.|++++|.+.+.-..|..+..+++|+.|++++|++++..|..+                    
T Consensus       441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~--------------------  500 (680)
T 1ziw_A          441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--------------------  500 (680)
T ss_dssp             SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT--------------------
T ss_pred             CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh--------------------
Confidence            999999999999999999999999987433348889999999999999999986554321                    


Q ss_pred             hhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCc--------ccccCCCCCCEEECCCCcCccc
Q 047927          812 LQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIP--------EEMGLLQSLCALNLSHNALTGS  883 (1005)
Q Consensus       812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip--------~~~~~l~~L~~L~Ls~N~l~g~  883 (1005)
                                                   ..++.|+.|+|++|++++..+        ..++++++|++|+|++|+++..
T Consensus       501 -----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          501 -----------------------------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             -----------------------------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred             -----------------------------ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence                                         146788999999999987522        3489999999999999999954


Q ss_pred             CchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCC--cccccccccccCCCCCCCCC
Q 047927          884 IPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTST--QLQSFLATSFEGNDRLWGPP  956 (1005)
Q Consensus       884 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~~gn~~lc~~~  956 (1005)
                      .+..|+++++|+.|||++|++++..|..|.++++|+.|++++|+|++..|...  .+..+....+.|||-.|..+
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            44568999999999999999998888889999999999999999999766432  34556667788999888754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.7e-52  Score=497.60  Aligned_cols=525  Identities=22%  Similarity=0.207  Sum_probs=328.5

Q ss_pred             CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927          189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL  268 (1005)
Q Consensus       189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  268 (1005)
                      +++++|++++|.+++..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++.+++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            56788888888888777778888888888888888887777788888888888888888888777888888888888888


Q ss_pred             CCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCc--EEECcCCcCc
Q 047927          269 SYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLV--YLDMSFNHFS  346 (1005)
Q Consensus       269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~L~~n~l~  346 (1005)
                      ++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|+  .|++++|.+.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            88877654445566677777777777777764434444477777777777777766666666777777  6777777777


Q ss_pred             cCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccc
Q 047927          347 GPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISN  426 (1005)
Q Consensus       347 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  426 (1005)
                      +..+......+|++|++++|..   ++.. +..+.++....+....+.           .+....+.             
T Consensus       193 ~~~~~~~~~~~L~~L~l~~~~~---~~~~-~~~l~~~~l~~l~~~~~~-----------~~~~~~i~-------------  244 (606)
T 3t6q_A          193 GIEPGAFDSAVFQSLNFGGTQN---LLVI-FKGLKNSTIQSLWLGTFE-----------DMDDEDIS-------------  244 (606)
T ss_dssp             EECTTTTTTCEEEEEECTTCSC---HHHH-HHHTTTCEEEEEECCCCT-----------TSCCCCCC-------------
T ss_pred             ccChhHhhhccccccccCCchh---HHHH-hhhccccchhheechhhc-----------cccccccC-------------
Confidence            6666555555666666666541   1111 233333322222211111           00000010             


Q ss_pred             cccccCCEEeCCCCccCCCCCccccCcC--CCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCc
Q 047927          427 ASSSLLDTLDLSDNNLEGPIPLSFFELK--NLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPP  504 (1005)
Q Consensus       427 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  504 (1005)
                                          +..+..+.  +|+.|++++|.+. .++...+..+++|++|++++|.              
T Consensus       245 --------------------~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~--------------  289 (606)
T 3t6q_A          245 --------------------PAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATH--------------  289 (606)
T ss_dssp             --------------------GGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSC--------------
T ss_pred             --------------------hhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCc--------------
Confidence                                11111111  3444444444443 2222222222222222222222              


Q ss_pred             ccceEEcCCccCcCCCC-CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEE
Q 047927          505 LLTTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLD  583 (1005)
Q Consensus       505 ~L~~L~L~~n~l~~l~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  583 (1005)
                                 ++.+|. +..+++|++|++++|.+.+..|..                           +..+++|++|+
T Consensus       290 -----------l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~---------------------------~~~l~~L~~L~  331 (606)
T 3t6q_A          290 -----------LSELPSGLVGLSTLKKLVLSANKFENLCQIS---------------------------ASNFPSLTHLS  331 (606)
T ss_dssp             -----------CSCCCSSCCSCTTCCEEECTTCCCSBGGGGC---------------------------GGGCTTCSEEE
T ss_pred             -----------cCCCChhhcccccCCEEECccCCcCcCchhh---------------------------hhccCcCCEEE
Confidence                       222222 444555666666666555332222                           22234555555


Q ss_pred             eccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccC
Q 047927          584 LHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMI  663 (1005)
Q Consensus       584 l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  663 (1005)
                      +++|.+.+.+|                                             +..+..+++|++|++++|.+++..
T Consensus       332 l~~n~~~~~~~---------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          332 IKGNTKRLELG---------------------------------------------TGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             CCSCSSCCBCC---------------------------------------------SSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             CCCCCcccccc---------------------------------------------hhhhhccCcCCEEECCCCcccccc
Confidence            55554433222                                             122445556666666666665443


Q ss_pred             --CchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcc-cccCCCCCCEEECCCCcCCCCcchh
Q 047927          664 --PTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPK-SLANCSVLEILDLGNNQFDDTFPCW  740 (1005)
Q Consensus       664 --p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~  740 (1005)
                        |..+..++  +|++|++++|++.+..|..|..+++|++|++++|++++..|. .+..+++|++|++++|++++..|.+
T Consensus       367 ~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  444 (606)
T 3t6q_A          367 CCNLQLRNLS--HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL  444 (606)
T ss_dssp             ESTTTTTTCT--TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred             CcchhcccCC--CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence              44555555  566666666666555555666666666666666666655443 3556666666666666666555555


Q ss_pred             hhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccc
Q 047927          741 VKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLS  820 (1005)
Q Consensus       741 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  820 (1005)
                      ++.+++|++|++++|++.+..                         +|..                              
T Consensus       445 ~~~l~~L~~L~L~~n~l~~~~-------------------------~~~~------------------------------  469 (606)
T 3t6q_A          445 FDGLPALQHLNLQGNHFPKGN-------------------------IQKT------------------------------  469 (606)
T ss_dssp             TTTCTTCCEEECTTCBCGGGE-------------------------ECSS------------------------------
T ss_pred             HhCCCCCCEEECCCCCCCccc-------------------------cccc------------------------------
Confidence            555555555555555554311                         1100                              


Q ss_pred             cccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCC
Q 047927          821 QAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLS  900 (1005)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs  900 (1005)
                                       ..+..++.|+.|++++|++++.+|..|+.+++|++|+|++|++++.+|..+.++++| .|||+
T Consensus       470 -----------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~  531 (606)
T 3t6q_A          470 -----------------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA  531 (606)
T ss_dssp             -----------------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred             -----------------hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence                             001146778889999999998999999999999999999999999999999999999 99999


Q ss_pred             CCcCcccCcccccCCCCCCeEEccCCcccccCCC
Q 047927          901 MNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPT  934 (1005)
Q Consensus       901 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  934 (1005)
                      +|++++.+|..+..+++|++|++++|+++|.++.
T Consensus       532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             SSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             CCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            9999999999999999999999999999998774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1e-49  Score=479.18  Aligned_cols=485  Identities=19%  Similarity=0.171  Sum_probs=270.8

Q ss_pred             ccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCC
Q 047927          207 PSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS  286 (1005)
Q Consensus       207 ~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~  286 (1005)
                      ..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..++.+++|++|++++|.+.....+.+..+++
T Consensus        75 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  154 (606)
T 3t6q_A           75 DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK  154 (606)
T ss_dssp             TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred             hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence            33444444444444444444444555555666666666666666544555666666666666666665555555656677


Q ss_pred             CcEEEcccccccccCchhhccCCCCC--EEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccC--cccEEE
Q 047927          287 LETLILSATNFSGILPDSIKNLKNLS--RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR--NLAYLD  362 (1005)
Q Consensus       287 L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~  362 (1005)
                      |++|++++|.+++..|..++.+++|+  .|++++|.+.+..|..+.. .+|+.|++++|....  .....+.  .++.+.
T Consensus       155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~--~~~~~l~~~~l~~l~  231 (606)
T 3t6q_A          155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLL--VIFKGLKNSTIQSLW  231 (606)
T ss_dssp             CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHH--HHHHHTTTCEEEEEE
T ss_pred             cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHH--HHhhhccccchhhee
Confidence            77777777777777777788888888  7788888887766665543 578888888775211  1111122  333444


Q ss_pred             CCCCcCc--CCCCcccccccc--cccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCC
Q 047927          363 LSYNIFT--GGISSIGWEQLL--NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLS  438 (1005)
Q Consensus       363 L~~n~l~--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~  438 (1005)
                      +....-.  ..++...+..+.  +|+++++++|.+++..+..+..+++|++|++++|++......+  ..+++|++|+++
T Consensus       232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l--~~l~~L~~L~l~  309 (606)
T 3t6q_A          232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL--VGLSTLKKLVLS  309 (606)
T ss_dssp             CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSC--CSCTTCCEEECT
T ss_pred             chhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhh--cccccCCEEECc
Confidence            3322100  122222244443  6788888888887666666777777777777777665221111  223455555555


Q ss_pred             CCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcC
Q 047927          439 DNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSA  518 (1005)
Q Consensus       439 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  518 (1005)
                      +|.+.+..|..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+......                     
T Consensus       310 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------  368 (606)
T 3t6q_A          310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC---------------------  368 (606)
T ss_dssp             TCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES---------------------
T ss_pred             cCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc---------------------
Confidence            55555555555556666666666666555455444445555555555555444433200                     


Q ss_pred             CC-CCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCC
Q 047927          519 IP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP  597 (1005)
Q Consensus       519 l~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  597 (1005)
                       + .+..+++|++|++++|.+.+..|..                           +..+++|++|++++|++.+..+.  
T Consensus       369 -~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------------------~~~l~~L~~L~l~~n~l~~~~~~--  418 (606)
T 3t6q_A          369 -NLQLRNLSHLQSLNLSYNEPLSLKTEA---------------------------FKECPQLELLDLAFTRLKVKDAQ--  418 (606)
T ss_dssp             -TTTTTTCTTCCEEECCSCSCEEECTTT---------------------------TTTCTTCSEEECTTCCEECCTTC--
T ss_pred             -chhcccCCCCCEEECCCCcCCcCCHHH---------------------------hcCCccCCeEECCCCcCCCcccc--
Confidence             1 1444555555555555554333322                           22334555555555555432221  


Q ss_pred             CCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccE
Q 047927          598 PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGV  677 (1005)
Q Consensus       598 ~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~  677 (1005)
                                                                 ..+..+++|+.|++++|.+++..|..+..++  +|++
T Consensus       419 -------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~  453 (606)
T 3t6q_A          419 -------------------------------------------SPFQNLHLLKVLNLSHSLLDISSEQLFDGLP--ALQH  453 (606)
T ss_dssp             -------------------------------------------CTTTTCTTCCEEECTTCCCBTTCTTTTTTCT--TCCE
T ss_pred             -------------------------------------------hhhhCcccCCEEECCCCccCCcCHHHHhCCC--CCCE
Confidence                                                       1244445555555555555544454455444  5555


Q ss_pred             EECCCCcCCcc---ccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCC
Q 047927          678 LNLRRNNLNGT---VSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRS  754 (1005)
Q Consensus       678 L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  754 (1005)
                      |++++|++++.   .+..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|.++.++++| +|++++
T Consensus       454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~  532 (606)
T 3t6q_A          454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS  532 (606)
T ss_dssp             EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred             EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence            55555555442   12345555566666666666665555666666666666666666666666666666666 666666


Q ss_pred             CcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhh
Q 047927          755 NNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL  795 (1005)
Q Consensus       755 N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l  795 (1005)
                      |++++..  |..+..+++|+.+++++|++.+.++..++..|
T Consensus       533 N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w  571 (606)
T 3t6q_A          533 NHISIIL--PSLLPILSQQRTINLRQNPLDCTCSNIYFLEW  571 (606)
T ss_dssp             SCCCCCC--GGGHHHHHTSSEEECTTCCEECSGGGHHHHHH
T ss_pred             CcccccC--HhhcccCCCCCEEeCCCCCccccCCcHHHHHH
Confidence            6665543  44455566667777777777777776665544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5e-50  Score=481.80  Aligned_cols=542  Identities=22%  Similarity=0.190  Sum_probs=307.6

Q ss_pred             cEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccc
Q 047927          216 SVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSAT  295 (1005)
Q Consensus       216 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n  295 (1005)
                      .+++.+++.+. .+|..+.  +++++|++++|.+++..+..+.++++|++|++++|.+                      
T Consensus        14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----------------------   68 (606)
T 3vq2_A           14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI----------------------   68 (606)
T ss_dssp             TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC----------------------
T ss_pred             CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc----------------------
Confidence            34555555553 2343332  5566666666666655555555555555555555544                      


Q ss_pred             cccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCC-cccccCcccEEECCCCcCcC-CCC
Q 047927          296 NFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTG-GIS  373 (1005)
Q Consensus       296 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~  373 (1005)
                        ++..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+ .+..+.+|++|++++|.+++ .+|
T Consensus        69 --~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp  146 (606)
T 3vq2_A           69 --ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP  146 (606)
T ss_dssp             --CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             --cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech
Confidence              44444555555555555555555555555555555555555555555543331 22233344444444444432 233


Q ss_pred             cccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCc
Q 047927          374 SIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFEL  453 (1005)
Q Consensus       374 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l  453 (1005)
                      .. ++.+++|++|++++|.+++..+..+..+++|+.                     .+.++++++|.+++..+..+...
T Consensus       147 ~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~---------------------~l~~L~l~~n~l~~~~~~~~~~~  204 (606)
T 3vq2_A          147 AY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ---------------------VNLSLDMSLNPIDFIQDQAFQGI  204 (606)
T ss_dssp             GG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT---------------------CCCEEECTTCCCCEECTTTTTTC
T ss_pred             Hh-HhhcCCCCEEEccCCcceecChhhhhhhhcccc---------------------ccceeeccCCCcceeCcccccCc
Confidence            33 555566666666666555444444433332220                     13456666666665544444443


Q ss_pred             CCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEEC
Q 047927          454 KNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDL  533 (1005)
Q Consensus       454 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~L  533 (1005)
                       +|+.|++++|.+.+......+..+++|+.+++..+.+.....         +..+     .-..++.+..+ .++.+++
T Consensus       205 -~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---------l~~~-----~~~~~~~l~~l-~l~~l~l  268 (606)
T 3vq2_A          205 -KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN---------LEIF-----EPSIMEGLCDV-TIDEFRL  268 (606)
T ss_dssp             -EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---------CSCC-----CGGGGTTGGGS-EEEEEEE
T ss_pred             -eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc---------cccc-----ChHHhhhhhhc-cHhheec
Confidence             788888888888766666778888888887776443321110         0000     00011112222 5666666


Q ss_pred             -cCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCcc
Q 047927          534 -SDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTS  612 (1005)
Q Consensus       534 -s~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~  612 (1005)
                       ..|.+.+.+|. +..  ...++.|++++|.+..++   .+..+++|++|++++|.+ +.+                   
T Consensus       269 ~~~~~~~~~~~~-~~~--l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~l-------------------  322 (606)
T 3vq2_A          269 TYTNDFSDDIVK-FHC--LANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQF-------------------  322 (606)
T ss_dssp             CCCTTCCGGGGS-CGG--GTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSC-------------------
T ss_pred             cccccccccccc-ccc--CCCCCEEEecCccchhhh---hccccccCCEEEcccccC-ccc-------------------
Confidence             55666655554 222  234555555555554443   334444555555555444 222                   


Q ss_pred             CCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCcccccc--CCchhhhcCcccccEEECCCCcCCcccc
Q 047927          613 SIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM--IPTCLINMSDSQLGVLNLRRNNLNGTVS  690 (1005)
Q Consensus       613 ~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~~~L~~L~L~~n~l~~~~~  690 (1005)
                        | .+  .++.|++|++++|...+.+  .+..+++|+.|++++|++++.  +|..+..++  +|++|++++|.+++ +|
T Consensus       323 --p-~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~--~L~~L~L~~n~l~~-~~  392 (606)
T 3vq2_A          323 --P-TL--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLRHLDLSFNGAII-MS  392 (606)
T ss_dssp             --C-CC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS--CCCEEECCSCSEEE-EC
T ss_pred             --c-cC--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCC--cccEeECCCCcccc-ch
Confidence              2 11  2445555555555443332  344555555555555555543  244454444  55555555555543 22


Q ss_pred             CccCCCCCccEEeCCCCeecccCc-ccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCC
Q 047927          691 ATFPANCSLRTLDLNGNQLEGMVP-KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVS  769 (1005)
Q Consensus       691 ~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  769 (1005)
                      ..|..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+                          ..
T Consensus       393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------~~  446 (606)
T 3vq2_A          393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--------------------------LG  446 (606)
T ss_dssp             CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--------------------------TT
T ss_pred             hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--------------------------cC
Confidence            444555555555555555554444 344555555555555555554444444                          44


Q ss_pred             CCCccEEEccCCccccc-CChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceE
Q 047927          770 WPMLQIIDLASNKFSGR-LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS  848 (1005)
Q Consensus       770 l~~L~~L~ls~N~~~~~-~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  848 (1005)
                      +++|+.|++++|++++. +|..+                                                 ..+++|+.
T Consensus       447 l~~L~~L~l~~n~l~~~~~~~~~-------------------------------------------------~~l~~L~~  477 (606)
T 3vq2_A          447 LTSLNTLKMAGNSFKDNTLSNVF-------------------------------------------------ANTTNLTF  477 (606)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCC-------------------------------------------------TTCTTCCE
T ss_pred             CCCCCEEECCCCcCCCcchHHhh-------------------------------------------------ccCCCCCE
Confidence            55555555555555442 23111                                                 13566778


Q ss_pred             EECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCC-CCCeEEccCCc
Q 047927          849 IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN-FLSVLNLSYNH  927 (1005)
Q Consensus       849 L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~  927 (1005)
                      |+|++|++++.+|..++++++|++|+|++|++++.+|..++++++|+.|||++|+++ .+|..+..++ +|++|++++|+
T Consensus       478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred             EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence            888888888888899999999999999999999999999999999999999999999 6787799997 59999999999


Q ss_pred             ccccCCC
Q 047927          928 LVGRIPT  934 (1005)
Q Consensus       928 l~g~ip~  934 (1005)
                      +.|.+|.
T Consensus       557 ~~c~c~~  563 (606)
T 3vq2_A          557 VACICEH  563 (606)
T ss_dssp             CCCSSTT
T ss_pred             cccCCcc
Confidence            9998875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-49  Score=493.75  Aligned_cols=567  Identities=21%  Similarity=0.227  Sum_probs=386.3

Q ss_pred             EEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCC-CCCCCcccCCCCCcEEEcccc
Q 047927          217 VIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELL-QGSLPDFHQNLSLETLILSAT  295 (1005)
Q Consensus       217 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~-~~~~~~~~~~~~L~~L~L~~n  295 (1005)
                      ..+.+++.+.. +|.   -.+++++|+|++|.+++..|..+.++++|++|++++|... ......|..+++|++|+|++|
T Consensus         8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            45666666644 454   3478999999999998888888899999999999888432 222345667777777777777


Q ss_pred             cccccCchhhccCCCCCEEeecCCccCCCCCcc--CCCCCCCcEEECcCCcCccCCC--cccccCcccEEECCCCcCcCC
Q 047927          296 NFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTS--MSDLSQLVYLDMSFNHFSGPIP--SLHMFRNLAYLDLSYNIFTGG  371 (1005)
Q Consensus       296 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~  371 (1005)
                      .+++..|..|+++++|++|++++|.+.+..|..  ++++++|++|++++|.+.+..+  .+..+++|++|++++|.+++.
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            777777777777777777777777777655543  7777777777777777765432  234455666666666666544


Q ss_pred             CCccccccc--ccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCcc
Q 047927          372 ISSIGWEQL--LNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLS  449 (1005)
Q Consensus       372 ~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  449 (1005)
                      .+.. +..+  ++|+.|+++.|.+.+..+..+..++..-                   ....|++|++++|.+++..+..
T Consensus       164 ~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~-------------------~~~~L~~L~Ls~n~l~~~~~~~  223 (844)
T 3j0a_A          164 CEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF-------------------RNMVLEILDVSGNGWTVDITGN  223 (844)
T ss_dssp             CSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT-------------------TTCCBSEEBCSSCCSSTTTTSG
T ss_pred             CHHH-cccccCCccceEECCCCccccccccchhhcCCcc-------------------ccCceeEEecCCCcCchhHHHH
Confidence            4433 4444  5566666666655554444433332200                   0012444444444444444333


Q ss_pred             ccCc---CCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCC--CCCC
Q 047927          450 FFEL---KNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIP--NLRK  524 (1005)
Q Consensus       450 l~~l---~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~--~l~~  524 (1005)
                      +...   +.++.+.++.+.....                                         ...+.+....  .+..
T Consensus       224 ~~~~l~~~~l~~L~l~~~~~~~~-----------------------------------------~~~~~l~~~~~~~f~~  262 (844)
T 3j0a_A          224 FSNAISKSQAFSLILAHHIMGAG-----------------------------------------FGFHNIKDPDQNTFAG  262 (844)
T ss_dssp             GGGTSCSCCBSEEECCSSCCBCS-----------------------------------------SSCSSSTTGGGTTTTT
T ss_pred             HHhhcCcccccceeccccccccc-----------------------------------------ccccccCCCChhhhhc
Confidence            3221   2333333332211100                                         0000000000  0111


Q ss_pred             --CCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcce
Q 047927          525 --QTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAY  602 (1005)
Q Consensus       525 --l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  602 (1005)
                        .++|+.|++++|.+.+..                           +..+..+++|+.|++++|.+.+..|.       
T Consensus       263 l~~~~L~~L~Ls~n~l~~~~---------------------------~~~~~~l~~L~~L~L~~n~i~~~~~~-------  308 (844)
T 3j0a_A          263 LARSSVRHLDLSHGFVFSLN---------------------------SRVFETLKDLKVLNLAYNKINKIADE-------  308 (844)
T ss_dssp             TTTSCCCEEECTTCCCCEEC---------------------------SCCSSSCCCCCEEEEESCCCCEECTT-------
T ss_pred             cccCCccEEECCCCcccccC---------------------------hhhhhcCCCCCEEECCCCcCCCCChH-------
Confidence              134444455444444222                           22345567788888888877754442       


Q ss_pred             eeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCC
Q 047927          603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRR  682 (1005)
Q Consensus       603 L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~  682 (1005)
                                     .+..++.|++|++++|.+++..|..+..+++|+.|++++|++.+..+..+..++  +|+.|++++
T Consensus       309 ---------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~--~L~~L~Ls~  371 (844)
T 3j0a_A          309 ---------------AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE--KLQTLDLRD  371 (844)
T ss_dssp             ---------------TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC--CCCEEEEET
T ss_pred             ---------------HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC--CCCEEECCC
Confidence                           122467888899999998888888999999999999999999887777888887  899999999


Q ss_pred             CcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCc-chhhhcCCCCcEEecCCCcCCccc
Q 047927          683 NNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF-PCWVKNASRLHVLILRSNNFFGNI  761 (1005)
Q Consensus       683 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~  761 (1005)
                      |.+++.     ..+++|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..+.++++|++|+|++|++++..
T Consensus       372 N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~  442 (844)
T 3j0a_A          372 NALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS  442 (844)
T ss_dssp             CCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred             CCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccc
Confidence            999854     33778999999999998 44543   568999999999998753 345678999999999999998643


Q ss_pred             CCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHH
Q 047927          762 SCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAK  841 (1005)
Q Consensus       762 ~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  841 (1005)
                      . ......+++|+.|++++|.+++..+....                                            ...+.
T Consensus       443 ~-~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--------------------------------------------~~~~~  477 (844)
T 3j0a_A          443 G-DQTPSENPSLEQLFLGENMLQLAWETELC--------------------------------------------WDVFE  477 (844)
T ss_dssp             S-SSSSCSCTTCCBCEEESCCCSSSCCSCCC--------------------------------------------SSCSS
T ss_pred             c-ccccccCCccccccCCCCccccccccccc--------------------------------------------hhhhc
Confidence            1 22455689999999999999754331100                                            00012


Q ss_pred             hcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 047927          842 ILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVL  921 (1005)
Q Consensus       842 ~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  921 (1005)
                      .+++|+.|||++|++++.+|..|+++++|+.|+|++|+|++..|..+.  ++|+.|||++|++++.+|..+.   +|++|
T Consensus       478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l  552 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVL  552 (844)
T ss_dssp             CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEE
T ss_pred             CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEE
Confidence            467899999999999999999999999999999999999987777665  8999999999999999998765   68999


Q ss_pred             EccCCcccccCCCCCcccccccccccCCCCCCCCCCCC-CCC
Q 047927          922 NLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNV-CPT  962 (1005)
Q Consensus       922 ~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~~~-c~~  962 (1005)
                      ++++|++.|.++.    .+|..+...++..+||.|... |..
T Consensus       553 ~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~  590 (844)
T 3j0a_A          553 DITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVY  590 (844)
T ss_dssp             EEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred             EecCCCccccccc----HHHHHHHHhcCcccccccccCccCC
Confidence            9999999998873    455556667788888887654 854

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3e-49  Score=475.09  Aligned_cols=528  Identities=20%  Similarity=0.185  Sum_probs=363.4

Q ss_pred             CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927          189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL  268 (1005)
Q Consensus       189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  268 (1005)
                      +++++|++++|.+++..+..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            67888888888888887888899999999999999888877888888999999999999998877888999999999999


Q ss_pred             CCCCCCCCCCCcccCCCCCcEEEcccccccc-cCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCc----EEECcCC
Q 047927          269 SYNELLQGSLPDFHQNLSLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLV----YLDMSFN  343 (1005)
Q Consensus       269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~L~~n  343 (1005)
                      ++|.+.......+..+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..++.+++|+    +|++++|
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence            9988766655567778888888888888875 4688888888888888888888877777676655544    7888888


Q ss_pred             cCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCccccccccc
Q 047927          344 HFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTE  423 (1005)
Q Consensus       344 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  423 (1005)
                      .+.+..+......+|++|++++|.+++......+..+++|+.+++..+.+.+...        +..+  ....       
T Consensus       192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--------l~~~--~~~~-------  254 (606)
T 3vq2_A          192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN--------LEIF--EPSI-------  254 (606)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC--------CSCC--CGGG-------
T ss_pred             CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc--------cccc--ChHH-------
Confidence            8876666555555777777777776643333336667777776665444331100        0000  0000       


Q ss_pred             ccccccccCCEEeC-CCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCccccc
Q 047927          424 ISNASSSLLDTLDL-SDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCF  502 (1005)
Q Consensus       424 ~~~~~~~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  502 (1005)
                      ........++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .++  .+..+++                      
T Consensus       255 ~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~----------------------  308 (606)
T 3vq2_A          255 MEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFK----------------------  308 (606)
T ss_dssp             GTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCC----------------------
T ss_pred             hhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh--hcccccc----------------------
Confidence            00000012333444 33344444333 444455555555555443 222  2333344                      


Q ss_pred             CcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCC-CCCccccCCcccE
Q 047927          503 PPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLE-QPYSISDLTSLSV  581 (1005)
Q Consensus       503 ~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~  581 (1005)
                         |++|++++|.++.+|.+ .+++|++|++++|...+.++  +  ...++|++|++++|.+.... .+..+..+++|++
T Consensus       309 ---L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~--~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~  380 (606)
T 3vq2_A          309 ---WQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFK--K--VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH  380 (606)
T ss_dssp             ---CSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEECC--C--CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE
T ss_pred             ---CCEEEcccccCcccccC-CCCccceeeccCCcCccchh--h--ccCCCCCEEECcCCccCCCcchhhhhccCCcccE
Confidence               44444444444444444 44455555555553322211  0  12233444444444443321 1122344556666


Q ss_pred             EEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCC-hhhhccCCCCeEEccCcccc
Q 047927          582 LDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIP-ESICNATNLLVLDLSYNYLS  660 (1005)
Q Consensus       582 L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~  660 (1005)
                      |++++|.+.+.                      |..+. .++.|++|++++|.+.+..| ..+..+++|+.|++++|+++
T Consensus       381 L~L~~n~l~~~----------------------~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  437 (606)
T 3vq2_A          381 LDLSFNGAIIM----------------------SANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK  437 (606)
T ss_dssp             EECCSCSEEEE----------------------CCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred             eECCCCccccc----------------------hhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence            66666665431                      11111 35667777777777777766 67888999999999999999


Q ss_pred             ccCCchhhhcCcccccEEECCCCcCCc-cccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcch
Q 047927          661 GMIPTCLINMSDSQLGVLNLRRNNLNG-TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPC  739 (1005)
Q Consensus       661 ~~~p~~~~~l~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  739 (1005)
                      +..|..+..++  +|++|++++|++++ ..|..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|.
T Consensus       438 ~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  515 (606)
T 3vq2_A          438 IDFDGIFLGLT--SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS  515 (606)
T ss_dssp             ECCTTTTTTCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred             ccchhhhcCCC--CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence            88888888888  89999999999988 4788899999999999999999998899999999999999999999999999


Q ss_pred             hhhcCCCCcEEecCCCcCCcccCCCCCCCCCC-CccEEEccCCcccccCChHHHhhh
Q 047927          740 WVKNASRLHVLILRSNNFFGNISCPRYNVSWP-MLQIIDLASNKFSGRLPQKWLLNL  795 (1005)
Q Consensus       740 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~ls~N~~~~~~p~~~~~~l  795 (1005)
                      +|+++++|++|++++|+++. +  |..+..++ +|+.+++++|++.+.++..|+..|
T Consensus       516 ~~~~l~~L~~L~l~~N~l~~-~--p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~  569 (606)
T 3vq2_A          516 HYNQLYSLSTLDCSFNRIET-S--KGILQHFPKSLAFFNLTNNSVACICEHQKFLQW  569 (606)
T ss_dssp             GTTTCTTCCEEECTTSCCCC-E--ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred             HccCCCcCCEEECCCCcCcc-c--CHhHhhhcccCcEEEccCCCcccCCccHHHHHH
Confidence            99999999999999999984 3  66678887 599999999999999998776554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.8e-50  Score=480.28  Aligned_cols=518  Identities=18%  Similarity=0.223  Sum_probs=319.9

Q ss_pred             CCCcHHHHHHHHHHhhhCCCCCCCc------ccccCCCCCCCCccc---ceeEECCCCCEEEEEcCCCCcccccCCCccc
Q 047927            6 GQCQSDQQSLLLQMKSRLTFDSSVS------FRMVQWSQSNDCCTW---SGVDCDEAGRVIGLDLSEESISAGIDNSSSL   76 (1005)
Q Consensus         6 ~~~~~~~~~~ll~~k~~~~~~~~~~------~~~~~w~~~~~~c~w---~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l   76 (1005)
                      ++....|++||.+||.++.. +.+.      ....+|+.+.+||.|   .||+|+..+||+.|+|+++++.|.+  ++++
T Consensus        25 ~~~~~~d~~aL~~~~~~~~~-~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l--p~~l  101 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDALNG-KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV--PDAI  101 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHTTG-GGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE--CGGG
T ss_pred             hhhHHHHHHHHHHHHHHcCC-CCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC--ChHH
Confidence            34455799999999999864 3221      123479988999999   9999988799999999999999988  8899


Q ss_pred             ccccccceeecCCccCCCC-----------CCCCcccCCCCCcEEEcccCCCcCCCcccccC-CCCCcEEeCCCcccccC
Q 047927           77 FSLKYLQSLNLAFNMFNAT-----------EIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSG-MTRLVTLDLSGMYFVRA  144 (1005)
Q Consensus        77 ~~l~~L~~L~Ls~~~~~~~-----------~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~-l~~L~~L~ls~n~~~~~  144 (1005)
                      +++++||+|+|++|.+...           .+|...  +.+|+ ++++++.+.+..|..++. +.++..+++....+...
T Consensus       102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~  178 (636)
T 4eco_A          102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS  178 (636)
T ss_dssp             GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred             hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence            9999999999999975211           234333  55666 777777776666655542 22222222221110000


Q ss_pred             ccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEcc--CCCCCCCCCccccCCCCCcEEECCC
Q 047927          145 PLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLS--GCFLSGPVDPSLSNLRSLSVIRLDM  222 (1005)
Q Consensus       145 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~l~~  222 (1005)
                                    ..                            ..++.+.+.  .|.+++ +|..++++++|++|++++
T Consensus       179 --------------~~----------------------------~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~  215 (636)
T 4eco_A          179 --------------SR----------------------------ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN  215 (636)
T ss_dssp             --------------CC----------------------------CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEES
T ss_pred             --------------cc----------------------------cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcC
Confidence                          00                            111111111  345555 566666666666666666


Q ss_pred             CCCCCC-----------------cchhcc--CCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccC
Q 047927          223 NDLYSP-----------------VPEFLA--DFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQ  283 (1005)
Q Consensus       223 n~~~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~  283 (1005)
                      |.+.+.                 +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|..          
T Consensus       216 n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~----------  285 (636)
T 4eco_A          216 SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG----------  285 (636)
T ss_dssp             CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT----------
T ss_pred             CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC----------
Confidence            666553                 555555  666666666666666656665555555555555555531          


Q ss_pred             CCCCcEEEcccccccc-cCchhhccC------CCCCEEeecCCccCCCCCc--cCCCCCCCcEEECcCCcCccCCCcccc
Q 047927          284 NLSLETLILSATNFSG-ILPDSIKNL------KNLSRVEFYLCNFNGPIPT--SMSDLSQLVYLDMSFNHFSGPIPSLHM  354 (1005)
Q Consensus       284 ~~~L~~L~L~~n~l~~-~~p~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~  354 (1005)
                                   +++ .+|..++.+      ++|++|++++|.+. .+|.  .++.+++|++|++++|.+.|.+|.+..
T Consensus       286 -------------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~  351 (636)
T 4eco_A          286 -------------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS  351 (636)
T ss_dssp             -------------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred             -------------CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence                         556 677777765      88888888888888 7777  788888888888888888866665555


Q ss_pred             cCcccEEECCCCcCcCCCCccccccccc-ccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCC
Q 047927          355 FRNLAYLDLSYNIFTGGISSIGWEQLLN-LFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLD  433 (1005)
Q Consensus       355 ~~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  433 (1005)
                      +++|++|++++|.++ .+|.. +..+++ |++|++++|.++ .+|..+..++                       .++|+
T Consensus       352 l~~L~~L~L~~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~-----------------------l~~L~  405 (636)
T 4eco_A          352 EIKLASLNLAYNQIT-EIPAN-FCGFTEQVENLSFAHNKLK-YIPNIFDAKS-----------------------VSVMS  405 (636)
T ss_dssp             EEEESEEECCSSEEE-ECCTT-SEEECTTCCEEECCSSCCS-SCCSCCCTTC-----------------------SSCEE
T ss_pred             CCCCCEEECCCCccc-cccHh-hhhhcccCcEEEccCCcCc-ccchhhhhcc-----------------------cCccC
Confidence            667777777777776 55555 667777 777777777776 5665554332                       22355


Q ss_pred             EEeCCCCccCCCCCcccc-------CcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCccc
Q 047927          434 TLDLSDNNLEGPIPLSFF-------ELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLL  506 (1005)
Q Consensus       434 ~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L  506 (1005)
                      +|++++|.+++..|..+.       .+++|+.|++++|++. .++...+..+++|++|++++|+++.++...+....+  
T Consensus       406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~--  482 (636)
T 4eco_A          406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE--  482 (636)
T ss_dssp             EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE--
T ss_pred             EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc--
Confidence            555566666666666666       6778999999999988 778777888899999999998888666544332211  


Q ss_pred             ceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEecc
Q 047927          507 TTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHS  586 (1005)
Q Consensus       507 ~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  586 (1005)
                                    .+..+++|++|++++|+++ .+|..+.....++|+.|++++|++..+  +..+..+++|++|++++
T Consensus       483 --------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          483 --------------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKF--PTQPLNSSTLKGFGIRN  545 (636)
T ss_dssp             --------------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSC--CCGGGGCSSCCEEECCS
T ss_pred             --------------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCc--ChhhhcCCCCCEEECCC
Confidence                          0222335555555555555 344333211111222222222222221  11122334555555554


Q ss_pred             CcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCch
Q 047927          587 NQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTC  666 (1005)
Q Consensus       587 n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  666 (1005)
                      |+.                                        +++|++.+.+|..+..+++|+.|+|++|++ +.+|..
T Consensus       546 N~~----------------------------------------ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          546 QRD----------------------------------------AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             CBC----------------------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             Ccc----------------------------------------cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence            441                                        123444555566666666677777777766 355555


Q ss_pred             hhhcCcccccEEECCCCcCCc
Q 047927          667 LINMSDSQLGVLNLRRNNLNG  687 (1005)
Q Consensus       667 ~~~l~~~~L~~L~L~~n~l~~  687 (1005)
                      +.  +  +|+.|++++|++..
T Consensus       585 ~~--~--~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          585 IT--P--NISVLDIKDNPNIS  601 (636)
T ss_dssp             CC--T--TCCEEECCSCTTCE
T ss_pred             Hh--C--cCCEEECcCCCCcc
Confidence            43  2  56666666665553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=8e-46  Score=459.44  Aligned_cols=459  Identities=21%  Similarity=0.226  Sum_probs=267.4

Q ss_pred             CCCCCCCCccccCCCCCcEEECCCCCCCCCcchh--ccCCCCCcEEEccCCCCCccCc-cccCCCCCCCEEeCCCCCCCC
Q 047927          199 CFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEF--LADFSNLTSLYLSSCGLHGAFP-EKILQLPTLETLDLSYNELLQ  275 (1005)
Q Consensus       199 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~~~  275 (1005)
                      |.+.+..|..|+++++|++|++++|.+.+.+|..  ++++++|++|++++|.+++..+ ..++++++|++|++++|.+..
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            3444445666777777777777777776655543  6677777777777777765543 456667777777777666544


Q ss_pred             CCCCcccCC--CCCcEEEcccccccccCchhhccCCC------CCEEeecCCccCCCCCccCCC---CCCCcEEECcCCc
Q 047927          276 GSLPDFHQN--LSLETLILSATNFSGILPDSIKNLKN------LSRVEFYLCNFNGPIPTSMSD---LSQLVYLDMSFNH  344 (1005)
Q Consensus       276 ~~~~~~~~~--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~---l~~L~~L~L~~n~  344 (1005)
                      .....+..+  ++|+.|++++|.+.+..|..++.+++      |+.|++++|.+.+..+..+..   ..+++.+.++.+.
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            333344333  45555555555555554444444333      555555555444444433322   1334444443222


Q ss_pred             CccCCCcccccCcccEEECCCCcCcCCCCcccccc--cccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccc
Q 047927          345 FSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQ--LLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVT  422 (1005)
Q Consensus       345 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  422 (1005)
                      ....              ...+.+.+.. ...+..  .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus       243 ~~~~--------------~~~~~l~~~~-~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~  307 (844)
T 3j0a_A          243 MGAG--------------FGFHNIKDPD-QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD  307 (844)
T ss_dssp             CBCS--------------SSCSSSTTGG-GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred             cccc--------------ccccccCCCC-hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence            1100              0011111111 111222  2567777777777776666667777777777777776664433


Q ss_pred             cccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCccccc
Q 047927          423 EISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCF  502 (1005)
Q Consensus       423 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  502 (1005)
                      .. ...+++|++|++++|.+++..+..|..+++|+.|++++|++. .++...+..+++|++|++++|.++.++.      
T Consensus       308 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------  379 (844)
T 3j0a_A          308 EA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHF------  379 (844)
T ss_dssp             TT-TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSS------
T ss_pred             HH-hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccC------
Confidence            22 223556777777777777666777777788888888887775 4555566777777777777777664432      


Q ss_pred             CcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEE
Q 047927          503 PPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVL  582 (1005)
Q Consensus       503 ~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  582 (1005)
                      .++|+.|++++|+++.+|..  ..+++.|++++|.+.                          .++....+..+++|++|
T Consensus       380 ~~~L~~L~l~~N~l~~l~~~--~~~l~~L~ls~N~l~--------------------------~l~~~~~~~~l~~L~~L  431 (844)
T 3j0a_A          380 IPSIPDIFLSGNKLVTLPKI--NLTANLIHLSENRLE--------------------------NLDILYFLLRVPHLQIL  431 (844)
T ss_dssp             CCSCSEEEEESCCCCCCCCC--CTTCCEEECCSCCCC--------------------------SSTTHHHHTTCTTCCEE
T ss_pred             CCCcchhccCCCCccccccc--ccccceeecccCccc--------------------------cCchhhhhhcCCcccee
Confidence            34466666666666655542  234555555555555                          33222223345566666


Q ss_pred             EeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCccc-----ccCChhhhccCCCCeEEccCc
Q 047927          583 DLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLT-----GVIPESICNATNLLVLDLSYN  657 (1005)
Q Consensus       583 ~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N  657 (1005)
                      ++++|++++..+..                     ....++.|+.|++++|.++     +..+..|..+++|+.|+|++|
T Consensus       432 ~Ls~N~l~~~~~~~---------------------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N  490 (844)
T 3j0a_A          432 ILNQNRFSSCSGDQ---------------------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN  490 (844)
T ss_dssp             EEESCCCCCCCSSS---------------------SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred             eCCCCccccccccc---------------------ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence            66666665322210                     0001223333333333333     233455667777777777777


Q ss_pred             cccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCC
Q 047927          658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT  736 (1005)
Q Consensus       658 ~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  736 (1005)
                      ++++..|..+..++  +|+.|+|++|++++..+..+.  ++|++|+|++|++++..|+.|.   +|+.|++++|++.+.
T Consensus       491 ~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          491 YLNSLPPGVFSHLT--ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICE  562 (844)
T ss_dssp             HHTTCCTTSSSSCC--SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCS
T ss_pred             cccccChhHccchh--hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccc
Confidence            77777777777776  777777777777777666665  6788888888888877776653   677788888877653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7e-47  Score=458.11  Aligned_cols=492  Identities=18%  Similarity=0.223  Sum_probs=339.2

Q ss_pred             ccCCCcHHHHHHHHHHhhhCCCCCCCcccccCCCCCC-----CC--ccc------------ceeEECCCCCEEEEEcCCC
Q 047927            4 VSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSN-----DC--CTW------------SGVDCDEAGRVIGLDLSEE   64 (1005)
Q Consensus         4 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~v~~L~L~~~   64 (1005)
                      ..+++..+|++||++||+++.+ |       +|+.+.     +|  |.|            .||.|+..+||+.|+|+++
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~-~-------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~  333 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDG-K-------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF  333 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTG-G-------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTT
T ss_pred             cccccchHHHHHHHHHHHHcCC-C-------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccC
Confidence            3455667899999999999953 3       575543     55  999            9999998899999999999


Q ss_pred             CcccccCCCcccccccccceeec-CCccCCCCCCCCc-c-----------------------------------------
Q 047927           65 SISAGIDNSSSLFSLKYLQSLNL-AFNMFNATEIPSG-L-----------------------------------------  101 (1005)
Q Consensus        65 ~l~~~~~~~~~l~~l~~L~~L~L-s~~~~~~~~lp~~-l-----------------------------------------  101 (1005)
                      ++.|.+  ++.++++++|++|+| ++|.+.+. .|-. .                                         
T Consensus       334 ~L~G~i--p~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~  410 (876)
T 4ecn_A          334 GAKGRV--PDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR  410 (876)
T ss_dssp             CCEEEE--CGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred             CCCCcC--chHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence            999998  899999999999999 88876544 1211 0                                         


Q ss_pred             ---------cCCCCCcEEEccc--CCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCC
Q 047927          102 ---------GNLTNLTTLNLSN--AGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDG  170 (1005)
Q Consensus       102 ---------~~l~~L~~L~Ls~--n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  170 (1005)
                               .....++.+.+..  |.+.+ +|..++++++|++|++++|.++.........               ..+.
T Consensus       411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~---------------~~s~  474 (876)
T 4ecn_A          411 NPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE---------------DANS  474 (876)
T ss_dssp             CTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---------------CTTS
T ss_pred             CccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc---------------cccc
Confidence                     1112222233332  55665 7777777777777777777765410000000               0000


Q ss_pred             ccCCC-chhhHHHHHh-ccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCC-CCC-CcchhccCCC-------CC
Q 047927          171 VNISA-PGIEWCQALS-SLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND-LYS-PVPEFLADFS-------NL  239 (1005)
Q Consensus       171 ~~~~~-~~~~~~~~l~-~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~p~~l~~l~-------~L  239 (1005)
                      +.... .+    ..+. ..+++|++|+|++|.+.+.+|..++++++|+.|++++|. +.+ .+|..+++++       +|
T Consensus       475 n~~~g~iP----~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L  550 (876)
T 4ecn_A          475 DYAKQYEN----EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI  550 (876)
T ss_dssp             HHHHHHTT----SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred             ccccccCC----hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence            00000 00    0011 012788888888888889999999999999999999998 777 7787666554       99


Q ss_pred             cEEEccCCCCCccCcc--ccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCC-CCEEee
Q 047927          240 TSLYLSSCGLHGAFPE--KILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKN-LSRVEF  316 (1005)
Q Consensus       240 ~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l  316 (1005)
                      ++|++++|.++ .+|.  .++++++|++|++++|.+.  .++.+..+++|+.|++++|.++ .+|..+..+++ |+.|++
T Consensus       551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF  626 (876)
T ss_dssp             CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred             cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence            99999999999 7888  8999999999999999876  5557888999999999999988 78888899988 999999


Q ss_pred             cCCccCCCCCccCCCCCC--CcEEECcCCcCccCCCccc------ccCcccEEECCCCcCcCCCCcccccccccccEEEc
Q 047927          317 YLCNFNGPIPTSMSDLSQ--LVYLDMSFNHFSGPIPSLH------MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDL  388 (1005)
Q Consensus       317 ~~n~~~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  388 (1005)
                      ++|.+. .+|..+..++.  |+.|++++|.+.+.++.+.      ...+|+.|++++|.++ .+|...+..+++|+.|++
T Consensus       627 s~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~L  704 (876)
T 4ecn_A          627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIIL  704 (876)
T ss_dssp             CSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEEC
T ss_pred             cCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEEC
Confidence            999988 77877776654  9999999999887665433      3347889999999888 566654567888999999


Q ss_pred             CCCcCCCccCccCCCC--------CCCCEEeCcCcccccccccccc-cccccCCEEeCCCCccCCCCCccccCcCCCcEE
Q 047927          389 SHNNLGGSIPQSLFEL--------PMVQHLLLADNQFDGHVTEISN-ASSSLLDTLDLSDNNLEGPIPLSFFELKNLKIL  459 (1005)
Q Consensus       389 ~~n~l~~~~~~~l~~l--------~~L~~L~l~~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  459 (1005)
                      ++|.++ .+|..+...        ++|+.|++++|++.. ++.... ..+++|+.|++++|.+++ +|..+..+++|+.|
T Consensus       705 s~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L  781 (876)
T 4ecn_A          705 SNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF  781 (876)
T ss_dssp             CSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred             CCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence            988888 666655432        267777777777663 332222 345667777777777765 56666677777777


Q ss_pred             ECCC------CcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC-CCCCCceeEEE
Q 047927          460 LLSS------NKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLD  532 (1005)
Q Consensus       460 ~L~~------n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~~l~~L~~L~  532 (1005)
                      ++++      |++.+.+| ..+..+++                         |+.|++++|+++.+|. +.  ++|+.|+
T Consensus       782 ~Ls~N~~ls~N~l~~~ip-~~l~~L~~-------------------------L~~L~Ls~N~L~~Ip~~l~--~~L~~Ld  833 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWP-TGITTCPS-------------------------LIQLQIGSNDIRKVDEKLT--PQLYILD  833 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCC-TTGGGCSS-------------------------CCEEECCSSCCCBCCSCCC--SSSCEEE
T ss_pred             ECCCCCCcccccccccCh-HHHhcCCC-------------------------CCEEECCCCCCCccCHhhc--CCCCEEE
Confidence            7755      44443333 23444444                         4555555555555554 22  5777888


Q ss_pred             CcCCcCCCCCChhhhhhcCCcccEEeCCCCccc
Q 047927          533 LSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLV  565 (1005)
Q Consensus       533 Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~  565 (1005)
                      |++|++....+..+....  ....+.+.+|+..
T Consensus       834 Ls~N~l~~i~~~~~~~~~--~~~~~~L~~n~~~  864 (876)
T 4ecn_A          834 IADNPNISIDVTSVCPYI--EAGMYVLLYDKTQ  864 (876)
T ss_dssp             CCSCTTCEEECGGGHHHH--HTTCCEEECCTTS
T ss_pred             CCCCCCCccChHHccccc--cchheeecCCCcc
Confidence            888877655444443321  2334445555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-45  Score=439.63  Aligned_cols=239  Identities=20%  Similarity=0.177  Sum_probs=170.1

Q ss_pred             ChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccC--cccc
Q 047927          640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMV--PKSL  717 (1005)
Q Consensus       640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--p~~l  717 (1005)
                      |..+..+ +|+.|++++|.+. .+|.  ..++  +|+.|++++|.+.+..+.  ..+++|++|++++|++++..  |..+
T Consensus       298 ~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~--~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~  369 (570)
T 2z63_A          298 KDFSYNF-GWQHLELVNCKFG-QFPT--LKLK--SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD  369 (570)
T ss_dssp             CBCCSCC-CCSEEEEESCBCS-SCCB--CBCS--SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred             hhhhccC-CccEEeeccCccc-ccCc--cccc--ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc
Confidence            3334444 5555555555555 3333  2333  555666666555544443  45556666666666666443  5556


Q ss_pred             cCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhh
Q 047927          718 ANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEA  797 (1005)
Q Consensus       718 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~  797 (1005)
                      ..+++|++|++++|++++..+. +..+++|++|++++|++.+... +..+..+++|+.|++++|++.+..|..+      
T Consensus       370 ~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~------  441 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIF------  441 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT-SCTTTTCTTCCEEECTTSCCEECCTTTT------
T ss_pred             cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc-hhhhhcCCCCCEEeCcCCcccccchhhh------
Confidence            6666666666666666654443 6666666666666666655431 1345667777777777777766555321      


Q ss_pred             hhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeee-ccCcccccCCCCCCEEECC
Q 047927          798 MMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFE-GPIPEEMGLLQSLCALNLS  876 (1005)
Q Consensus       798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-g~ip~~~~~l~~L~~L~Ls  876 (1005)
                                                                 ..+++|+.|++++|+++ +.+|..++.+++|++|+|+
T Consensus       442 -------------------------------------------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  478 (570)
T 2z63_A          442 -------------------------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  478 (570)
T ss_dssp             -------------------------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             -------------------------------------------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence                                                       13567888999999987 6799999999999999999


Q ss_pred             CCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCCc
Q 047927          877 HNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQ  937 (1005)
Q Consensus       877 ~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~  937 (1005)
                      +|++++.+|..++++++|+.|++++|++++.+|..+.++++|++|++++|+++|.+|....
T Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence            9999999999999999999999999999999999999999999999999999999997543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.8e-44  Score=428.27  Aligned_cols=475  Identities=20%  Similarity=0.198  Sum_probs=277.0

Q ss_pred             CcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCc-ccccCcccEEECCC
Q 047927          287 LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS-LHMFRNLAYLDLSY  365 (1005)
Q Consensus       287 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~L~~  365 (1005)
                      |++|++++|.+++..|..|.++++|++|++++|.+.+..|..|+.+++|++|++++|.+.+..+. +..+++|++|++++
T Consensus        28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  107 (549)
T 2z81_A           28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG  107 (549)
T ss_dssp             CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred             ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence            33333333444444444555555555555555555554445555555555555555555543332 23333444444444


Q ss_pred             CcCcCC-CCcccccccccccEEEcCCCcCCCccC-ccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccC
Q 047927          366 NIFTGG-ISSIGWEQLLNLFHVDLSHNNLGGSIP-QSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE  443 (1005)
Q Consensus       366 n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  443 (1005)
                      |.+++. ++.. +..+++|++|++++|.+.+.++ ..+..+++                         |++|++++|.++
T Consensus       108 n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-------------------------L~~L~L~~n~l~  161 (549)
T 2z81_A          108 NPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-------------------------LNELEIKALSLR  161 (549)
T ss_dssp             CCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCE-------------------------EEEEEEEETTCC
T ss_pred             Ccccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccc-------------------------cCeeeccCCccc
Confidence            444321 2222 5566666666666666333333 34444444                         555555555666


Q ss_pred             CCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCC
Q 047927          444 GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLR  523 (1005)
Q Consensus       444 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~  523 (1005)
                      +..|..+..+++|+.|++++|.+. .++...+..+++|++|++++|+++..+...                    .+...
T Consensus       162 ~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------~~~~~  220 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP--------------------LPVDE  220 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC--------------------CSSCC
T ss_pred             ccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccc--------------------cchhh
Confidence            677788888899999999998875 555555667888888888888766432110                    01134


Q ss_pred             CCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCccee
Q 047927          524 KQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYV  603 (1005)
Q Consensus       524 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  603 (1005)
                      .+++|+.|++++|.+.+..+..+...                       +..+++|+.+++++|.+.+.........   
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~-----------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~---  274 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKL-----------------------LRYILELSEVEFDDCTLNGLGDFNPSES---  274 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGG-----------------------GGGCTTCCEEEEESCEEECCSCCCCCTT---
T ss_pred             hhhcccceeccccccchhHHHHHHHH-----------------------hhhhccccccccccccccccccccccch---
Confidence            46678888888887775555444321                       2234556666666666654211000000   


Q ss_pred             eCcCCcCccCCCcchhcccCceEEEEecCCcccc-----cCChhhhccCCCCeEEccCccccccCCchh-hhcCcccccE
Q 047927          604 DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTG-----VIPESICNATNLLVLDLSYNYLSGMIPTCL-INMSDSQLGV  677 (1005)
Q Consensus       604 ~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~~~L~~  677 (1005)
                                   .....+..++.+++.++.+..     .++..+....+|+.|++++|.+. .+|..+ ..++  +|++
T Consensus       275 -------------~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~--~L~~  338 (549)
T 2z81_A          275 -------------DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK--SLEF  338 (549)
T ss_dssp             -------------TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT--TCCE
T ss_pred             -------------hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc--cccE
Confidence                         000012333444444433321     12223344556666777766665 455554 3454  5666


Q ss_pred             EECCCCcCCcccc---CccCCCCCccEEeCCCCeecccCc--ccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEec
Q 047927          678 LNLRRNNLNGTVS---ATFPANCSLRTLDLNGNQLEGMVP--KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLIL  752 (1005)
Q Consensus       678 L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  752 (1005)
                      |++++|++++..|   ..+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|.+            
T Consensus       339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~------------  405 (549)
T 2z81_A          339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS------------  405 (549)
T ss_dssp             EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSC------------
T ss_pred             EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChh------------
Confidence            6666666665442   234455555555555555554321  33455555555555555554 23444            


Q ss_pred             CCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEE
Q 047927          753 RSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTI  832 (1005)
Q Consensus       753 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (1005)
                                    +..+++|++|++++|++++ +|..                                          
T Consensus       406 --------------~~~~~~L~~L~Ls~N~l~~-l~~~------------------------------------------  428 (549)
T 2z81_A          406 --------------CQWPEKMRFLNLSSTGIRV-VKTC------------------------------------------  428 (549)
T ss_dssp             --------------CCCCTTCCEEECTTSCCSC-CCTT------------------------------------------
T ss_pred             --------------hcccccccEEECCCCCccc-ccch------------------------------------------
Confidence                          4444555555555555442 1210                                          


Q ss_pred             cchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccc
Q 047927          833 KGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQL  912 (1005)
Q Consensus       833 ~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l  912 (1005)
                               ..+.|+.|||++|++++.+    +.+++|++|+|++|+++ .||. .+.+++|++|||++|++++.+|..+
T Consensus       429 ---------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~  493 (549)
T 2z81_A          429 ---------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF  493 (549)
T ss_dssp             ---------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred             ---------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence                     1235778888888888753    57899999999999999 7887 5789999999999999999999999


Q ss_pred             cCCCCCCeEEccCCcccccCCCC
Q 047927          913 ASLNFLSVLNLSYNHLVGRIPTS  935 (1005)
Q Consensus       913 ~~l~~L~~L~ls~N~l~g~ip~~  935 (1005)
                      ..+++|++|++++|+++|.+|..
T Consensus       494 ~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          494 DRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             GGCTTCCEEECCSSCBCCCHHHH
T ss_pred             hcCcccCEEEecCCCccCCCccH
Confidence            99999999999999999998843

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.6e-44  Score=428.03  Aligned_cols=504  Identities=20%  Similarity=0.171  Sum_probs=352.3

Q ss_pred             CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927          189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL  268 (1005)
Q Consensus       189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  268 (1005)
                      +++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..|..+++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            67888888888888877788889999999999999888777778888999999999999988777788889999999999


Q ss_pred             CCCCCCCCCCCcccCCCCCcEEEcccccccc-cCchhhccCCCCCEEeecCCccCCCCCccCCCCCCC----cEEECcCC
Q 047927          269 SYNELLQGSLPDFHQNLSLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQL----VYLDMSFN  343 (1005)
Q Consensus       269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~L~~n  343 (1005)
                      ++|.+.......+..+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..++.+++|    +.+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            9988766554457778888888888888876 468888888888888888888877777777777777    78888888


Q ss_pred             cCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCccccccccc
Q 047927          344 HFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTE  423 (1005)
Q Consensus       344 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  423 (1005)
                      .+.+..+......+|++|++++|..........+..+++++...+....+..        ...++.+  ....+.     
T Consensus       188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~~~--~~~~~~-----  252 (570)
T 2z63_A          188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLEKF--DKSALE-----  252 (570)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCEEC--CTTTTG-----
T ss_pred             CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhhhc--chhhhc-----
Confidence            8777666555555777777777643322211224445555544443222110        0111100  000000     


Q ss_pred             ccccccccCCEEeCCCC-ccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCccccc
Q 047927          424 ISNASSSLLDTLDLSDN-NLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCF  502 (1005)
Q Consensus       424 ~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  502 (1005)
                        ....-.++.++++++ .+.+..+..+.                         .+++|++|++++|.+..++...  ..
T Consensus       253 --~l~~l~l~~l~l~~~~~~~~~~~~~~~-------------------------~l~~L~~L~l~~~~l~~l~~~~--~~  303 (570)
T 2z63_A          253 --GLCNLTIEEFRLAYLDYYLDDIIDLFN-------------------------CLTNVSSFSLVSVTIERVKDFS--YN  303 (570)
T ss_dssp             --GGGGSEEEEEEEEETTEEESCSTTTTG-------------------------GGTTCSEEEEESCEECSCCBCC--SC
T ss_pred             --cccccchhhhhhhcchhhhhhchhhhc-------------------------CcCcccEEEecCccchhhhhhh--cc
Confidence              000011333333333 33334444444                         4444455555444444333221  11


Q ss_pred             CcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEE
Q 047927          503 PPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVL  582 (1005)
Q Consensus       503 ~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  582 (1005)
                      . .|++|++++|.+..+|. ..+++|+.|++++|.+.+..+.                             ..+++|++|
T Consensus       304 ~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~-----------------------------~~~~~L~~L  352 (570)
T 2z63_A          304 F-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSE-----------------------------VDLPSLEFL  352 (570)
T ss_dssp             C-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCC-----------------------------CBCTTCCEE
T ss_pred             C-CccEEeeccCcccccCc-ccccccCEEeCcCCcccccccc-----------------------------ccCCCCCEE
Confidence            2 46777777777666664 4667888888888877644432                             123455555


Q ss_pred             EeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCcccccc
Q 047927          583 DLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM  662 (1005)
Q Consensus       583 ~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  662 (1005)
                      ++++|.+++..                   ..|..+ ..++.|++|++++|.+++..+. +..+++|+.|++++|.+.+.
T Consensus       353 ~l~~n~l~~~~-------------------~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          353 DLSRNGLSFKG-------------------CCSQSD-FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             ECCSSCCBEEE-------------------EEEHHH-HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred             eCcCCccCccc-------------------cccccc-cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence            55555544211                   001111 1345566666666666654444 77888999999999998876


Q ss_pred             CC-chhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec-ccCcccccCCCCCCEEECCCCcCCCCcchh
Q 047927          663 IP-TCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE-GMVPKSLANCSVLEILDLGNNQFDDTFPCW  740 (1005)
Q Consensus       663 ~p-~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~  740 (1005)
                      .| ..+..++  +|++|++++|.+.+..|..|..+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|.+
T Consensus       412 ~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~  489 (570)
T 2z63_A          412 SEFSVFLSLR--NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  489 (570)
T ss_dssp             TTSCTTTTCT--TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cchhhhhcCC--CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence            66 4677777  8999999999999988999999999999999999998 578899999999999999999999988999


Q ss_pred             hhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHH
Q 047927          741 VKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWL  792 (1005)
Q Consensus       741 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~  792 (1005)
                      |..+++|++|++++|++++..  |..+..+++|+.|++++|+++|.+|..++
T Consensus       490 ~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          490 FNSLSSLQVLNMASNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             TTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             hhcccCCCEEeCCCCcCCCCC--HHHhhcccCCcEEEecCCcccCCCcchHH
Confidence            999999999999999998765  66788999999999999999999997554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.5e-43  Score=418.39  Aligned_cols=493  Identities=18%  Similarity=0.170  Sum_probs=319.5

Q ss_pred             EEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEccccc
Q 047927          217 VIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN  296 (1005)
Q Consensus       217 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~  296 (1005)
                      +.+.+++.+. .+|..+.  ++|++|++++|++++..|..+.++++|++|++++|.+.......|..+++|++|++++|.
T Consensus         9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A            9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence            3456666664 3455443  678888888888887777777888888888888877655444456666677777777777


Q ss_pred             ccccCchhhccCCCCCEEeecCCccCC-CCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcc
Q 047927          297 FSGILPDSIKNLKNLSRVEFYLCNFNG-PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSI  375 (1005)
Q Consensus       297 l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  375 (1005)
                      +++..|..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|.+.                       +.++..
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------~~~~~~  142 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-----------------------SEIRRI  142 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------CEECTT
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc-----------------------cccCHh
Confidence            666666666666666666666666654 23455666666666666666532                       233322


Q ss_pred             cccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCC--C-ccccC
Q 047927          376 GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPI--P-LSFFE  452 (1005)
Q Consensus       376 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~-~~l~~  452 (1005)
                      .+..+++|++|++++|.+++..|..+..+++|++|+++.|.+.. ++......+++|++|++++|.+++..  + .....
T Consensus       143 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  221 (549)
T 2z81_A          143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV  221 (549)
T ss_dssp             TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred             hhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhh
Confidence            35566666677777776666666666667777777776666542 22222333566777777777776532  1 12245


Q ss_pred             cCCCcEEECCCCcceeccchh---HHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCcee
Q 047927          453 LKNLKILLLSSNKFVGTIELD---AIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLY  529 (1005)
Q Consensus       453 l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~  529 (1005)
                      +++|+.|++++|.+.+..+..   .+..+++|+.+++++|.+..+......                 ..+.+..++   
T Consensus       222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----------------~~~~~~~l~---  281 (549)
T 2z81_A          222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS-----------------ESDVVSELG---  281 (549)
T ss_dssp             CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC-----------------TTTCCCCCT---
T ss_pred             hhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc-----------------chhhhhhhc---
Confidence            678888888888877543322   123445566666665555433211000                 000122233   


Q ss_pred             EEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCc
Q 047927          530 HLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNN  609 (1005)
Q Consensus       530 ~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~  609 (1005)
                                                                      +++.++++++.+.....               
T Consensus       282 ------------------------------------------------~L~~L~l~~~~i~~~~~---------------  298 (549)
T 2z81_A          282 ------------------------------------------------KVETVTIRRLHIPQFYL---------------  298 (549)
T ss_dssp             ------------------------------------------------TCCEEEEESCBCSCGGG---------------
T ss_pred             ------------------------------------------------ccccccccccccchhhh---------------
Confidence                                                            34444444433321000               


Q ss_pred             CccCCCcchhcccCceEEEEecCCcccccCChhh-hccCCCCeEEccCccccccCCc---hhhhcCcccccEEECCCCcC
Q 047927          610 FTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESI-CNATNLLVLDLSYNYLSGMIPT---CLINMSDSQLGVLNLRRNNL  685 (1005)
Q Consensus       610 ~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~~~L~~L~L~~n~l  685 (1005)
                       ...++ .+......++.+++++|.+. .+|..+ ..+++|++|++++|++++.+|.   .+..++  +|++|++++|++
T Consensus       299 -~~~l~-~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~--~L~~L~Ls~N~l  373 (549)
T 2z81_A          299 -FYDLS-TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP--SLQTLVLSQNHL  373 (549)
T ss_dssp             -SCCCC-HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST--TCCEEECTTSCC
T ss_pred             -cccch-hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc--cCcEEEccCCcc
Confidence             00000 11123455667777777765 556655 5799999999999999987653   366677  899999999999


Q ss_pred             Ccccc--CccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCC
Q 047927          686 NGTVS--ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISC  763 (1005)
Q Consensus       686 ~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~  763 (1005)
                      ++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++. |..+  .++|++|++++|++++.+  
T Consensus       374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~--  447 (549)
T 2z81_A          374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS--  447 (549)
T ss_dssp             CCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC--
T ss_pred             cccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc--
Confidence            98754  56889999999999999999 6788999999999999999998753 3222  145666666666554321  


Q ss_pred             CCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhc
Q 047927          764 PRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKIL  843 (1005)
Q Consensus       764 ~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  843 (1005)
                          ..                                                                         +
T Consensus       448 ----~~-------------------------------------------------------------------------l  450 (549)
T 2z81_A          448 ----LF-------------------------------------------------------------------------L  450 (549)
T ss_dssp             ----CC-------------------------------------------------------------------------C
T ss_pred             ----cc-------------------------------------------------------------------------C
Confidence                12                                                                         3


Q ss_pred             ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCc
Q 047927          844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIP  909 (1005)
Q Consensus       844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip  909 (1005)
                      +.|+.|||++|+++ .+|+ .+.+++|++|||++|++++.+|..++++++|+.||+++|.+++..|
T Consensus       451 ~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          451 PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            45566666666666 5665 4568888999999999998888888889999999999999988877

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.6e-44  Score=426.09  Aligned_cols=272  Identities=21%  Similarity=0.319  Sum_probs=224.7

Q ss_pred             CcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCc--chhcccCceEEEEecCCcccccCChhhhccCCCCeEEc
Q 047927          577 TSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPV--DIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDL  654 (1005)
Q Consensus       577 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~--~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L  654 (1005)
                      ++|++|++++|+++                      .+|.  .+. .++.|++|++++|+++|.+| .+..+++|+.|++
T Consensus       305 ~~L~~L~L~~n~l~----------------------~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          305 EKIQIIYIGYNNLK----------------------TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             GTCCEEECCSSCCS----------------------SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCCEEECCCCcCC----------------------ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            56666666666665                      4444  333 47788999999999998888 8889999999999


Q ss_pred             cCccccccCCchhhhcCccc-ccEEECCCCcCCccccCccCCCC--CccEEeCCCCeecccCccccc-------CCCCCC
Q 047927          655 SYNYLSGMIPTCLINMSDSQ-LGVLNLRRNNLNGTVSATFPANC--SLRTLDLNGNQLEGMVPKSLA-------NCSVLE  724 (1005)
Q Consensus       655 s~N~l~~~~p~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~l~-------~l~~L~  724 (1005)
                      ++|+++ .+|..+..++  + |++|++++|+++ .+|..+....  +|++|++++|++++.+|..+.       .+++|+
T Consensus       361 ~~N~l~-~lp~~l~~l~--~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          361 AYNQIT-EIPANFCGFT--EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             CSSEEE-ECCTTSEEEC--TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             CCCccc-cccHhhhhhc--ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence            999998 7888888887  7 999999999998 6677777654  899999999999998888888       788999


Q ss_pred             EEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCC--------CCCccEEEccCCcccccCChHHHhhhh
Q 047927          725 ILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVS--------WPMLQIIDLASNKFSGRLPQKWLLNLE  796 (1005)
Q Consensus       725 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--------l~~L~~L~ls~N~~~~~~p~~~~~~l~  796 (1005)
                      +|++++|+++...+..+..+++|++|+|++|+++ .+  |.....        +++|+.|++++|+++ .+|..+..   
T Consensus       437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i--~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---  509 (636)
T 4eco_A          437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI--PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA---  509 (636)
T ss_dssp             EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC--CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST---
T ss_pred             EEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc--CHHHhccccccccccCCccEEECcCCcCC-ccChhhhh---
Confidence            9999999999665566777999999999999998 44  554433        228999999999998 67743310   


Q ss_pred             hhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEEC-
Q 047927          797 AMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNL-  875 (1005)
Q Consensus       797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~L-  875 (1005)
                                                                  ..+++|+.|+|++|++++ +|..++++++|++|+| 
T Consensus       510 --------------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          510 --------------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             --------------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             --------------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence                                                        136788999999999998 8999999999999999 


Q ss_pred             -----CCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927          876 -----SHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       876 -----s~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  931 (1005)
                           ++|++.+.+|..++++++|+.|||++|++ +.+|..+.  ++|++||+++|++...
T Consensus       545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence                 56889999999999999999999999999 68898876  7999999999988753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.3e-41  Score=407.58  Aligned_cols=526  Identities=20%  Similarity=0.144  Sum_probs=361.6

Q ss_pred             CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927          189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL  268 (1005)
Q Consensus       189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  268 (1005)
                      +++++|+|++|.+++..+.+|.++++|++|++++|.+.+..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            67888899999988877788999999999999999988777778899999999999999998777778899999999999


Q ss_pred             CCCCCCCCCCCcccCCCCCcEEEcccccccc-cCchhhccCCCCCEEeecCCccCCCCCccCCCCCC----CcEEECcCC
Q 047927          269 SYNELLQGSLPDFHQNLSLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQ----LVYLDMSFN  343 (1005)
Q Consensus       269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~----L~~L~L~~n  343 (1005)
                      ++|.+.......|..+++|++|++++|.+++ ..|..++.+++|++|++++|.+.+..+..+..+.+    ...++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            9998866555567888899999999998875 35778888899999999999888777776655443    346788888


Q ss_pred             cCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCC------ccCccCCCCCCCCEEeCcCccc
Q 047927          344 HFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGG------SIPQSLFELPMVQHLLLADNQF  417 (1005)
Q Consensus       344 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~l~~n~l  417 (1005)
                      .+....+.......++.+++.+|.....+....+..+..++...+..+....      .....+.....+....+..+..
T Consensus       212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~  291 (635)
T 4g8a_A          212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  291 (635)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred             cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            8876666665556777888877765543433335566666655554332221      1111111122222222111110


Q ss_pred             ccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCC
Q 047927          418 DGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGS  497 (1005)
Q Consensus       418 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  497 (1005)
                      .                      ......+..+..+.+++.+.+.++.+.. +.  .+....+++.|++.+|.+..+...
T Consensus       292 ~----------------------~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~~  346 (635)
T 4g8a_A          292 D----------------------YYLDGIIDLFNCLTNVSSFSLVSVTIER-VK--DFSYNFGWQHLELVNCKFGQFPTL  346 (635)
T ss_dssp             C----------------------SCEEECTTTTGGGTTCSEEEEESCEEEE-CG--GGGSCCCCSEEEEESCEESSCCCC
T ss_pred             c----------------------ccccchhhhhhhhccccccccccccccc-cc--ccccchhhhhhhcccccccCcCcc
Confidence            0                      0011223345556777778877777653 22  355567777888877776655432


Q ss_pred             cccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCC
Q 047927          498 SVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLT  577 (1005)
Q Consensus       498 ~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~  577 (1005)
                          ....|+.+++..|.+...+....+++|+.++++.|.+....+.........+++.+++..|.+.....  .+..++
T Consensus       347 ----~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~--~~~~l~  420 (635)
T 4g8a_A          347 ----KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS--NFLGLE  420 (635)
T ss_dssp             ----BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS--CCTTCT
T ss_pred             ----cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc--cccccc
Confidence                23447777777777666666666777777787777765322111111223334444444443333211  122333


Q ss_pred             cccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccC-ChhhhccCCCCeEEccC
Q 047927          578 SLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVI-PESICNATNLLVLDLSY  656 (1005)
Q Consensus       578 ~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~Ls~  656 (1005)
                      +|+                                              .+++..+...... +..+..+++++.+++++
T Consensus       421 ~L~----------------------------------------------~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~  454 (635)
T 4g8a_A          421 QLE----------------------------------------------HLDFQHSNLKQMSEFSVFLSLRNLIYLDISH  454 (635)
T ss_dssp             TCC----------------------------------------------EEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred             ccc----------------------------------------------chhhhhccccccccccccccccccccccccc
Confidence            344                                              4444433333222 23466677788888888


Q ss_pred             ccccccCCchhhhcCcccccEEECCCCcC-CccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCC
Q 047927          657 NYLSGMIPTCLINMSDSQLGVLNLRRNNL-NGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD  735 (1005)
Q Consensus       657 N~l~~~~p~~~~~l~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  735 (1005)
                      |.+.+..+..+..++  +|+.|++++|++ .+..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++
T Consensus       455 n~l~~~~~~~~~~~~--~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~  532 (635)
T 4g8a_A          455 THTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  532 (635)
T ss_dssp             SCCEECCTTTTTTCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred             cccccccccccccch--hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence            888877777777776  788888888874 44567788888888888888888888888888888888888888888888


Q ss_pred             CcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCC-CCccEEEccCCcccccCChHHHhhh
Q 047927          736 TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW-PMLQIIDLASNKFSGRLPQKWLLNL  795 (1005)
Q Consensus       736 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~ls~N~~~~~~p~~~~~~l  795 (1005)
                      ..|..|+++++|++|+|++|++++..  |..+..+ ++|+.|++++|+|++.+...|+..|
T Consensus       533 l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~w  591 (635)
T 4g8a_A          533 LDTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW  591 (635)
T ss_dssp             CCCGGGTTCTTCCEEECTTSCCCBCC--SSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             CChhHHhCCCCCCEEECCCCcCCCCC--HHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence            88888888888888999988888776  7777777 5899999999999998887777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.1e-42  Score=404.63  Aligned_cols=452  Identities=18%  Similarity=0.175  Sum_probs=326.6

Q ss_pred             CEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEecc
Q 047927          408 QHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLS  487 (1005)
Q Consensus       408 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  487 (1005)
                      +++++++|.++.....+    .+++++|++++|.+++..|..|..+++|++|++++|+++ .+++..|..+++|++|+++
T Consensus         3 ~~l~ls~n~l~~ip~~~----~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDL----SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCSSCCCSC----CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCcccccccc----cccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecC
Confidence            57888888887433222    277899999999988777778888999999999999887 4555678888999999999


Q ss_pred             CCeeeEecCCcccccCcccceEEcCCccCcCC--CC-CCCCCceeEEECcCCcCCCCCChhhhhhcCCcc--cEEeCCCC
Q 047927          488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAI--PN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSF--NHLNLSHN  562 (1005)
Q Consensus       488 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l--~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L--~~L~L~~n  562 (1005)
                      +|+++.++..    ..++|++|++++|+++.+  |. ++.+++|++|++++|.+.+.   .+...  ..+  +.|++++|
T Consensus        78 ~N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l--~~L~L~~L~l~~n  148 (520)
T 2z7x_B           78 HNKLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPI--AHLNISKVLLVLG  148 (520)
T ss_dssp             SSCCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGG--TTSCEEEEEEEEC
T ss_pred             CCceeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hcccc--ccceeeEEEeecc
Confidence            9988887765    456688888888888763  44 77888888888888887642   22222  234  77777777


Q ss_pred             cc--cCCCCCCccccCC-cccEEEeccCcccccCCCC----CCCcceeeCcCCc-------CccCCCcchhcccCceEEE
Q 047927          563 LL--VSLEQPYSISDLT-SLSVLDLHSNQIQGKIPPL----PPNAAYVDYSGNN-------FTSSIPVDIGSFMSLSIFF  628 (1005)
Q Consensus       563 ~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~----~~~l~~L~ls~n~-------~~~~~p~~~~~~~~~L~~L  628 (1005)
                      .+  ... .+..+..+. ....+++++|.+.+.++..    ..+++.+++++|.       +.+.+| .+. .++.++.|
T Consensus       149 ~l~~~~~-~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~-~l~~L~~L  225 (520)
T 2z7x_B          149 ETYGEKE-DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ-TNPKLSNL  225 (520)
T ss_dssp             TTTTSSC-CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG-GCTTCCEE
T ss_pred             ccccccc-ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhc-cccchhhc
Confidence            66  222 112222222 2334566666666655542    3456666666665       444443 222 35666777


Q ss_pred             EecCCcccccCChhhh---ccCCCCeEEccCccccccCCchh-----hhcCcccccEEECCCCcCCcccc-CccCCC---
Q 047927          629 SFSKNSLTGVIPESIC---NATNLLVLDLSYNYLSGMIPTCL-----INMSDSQLGVLNLRRNNLNGTVS-ATFPAN---  696 (1005)
Q Consensus       629 ~l~~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l---  696 (1005)
                      ++++|.+++..+..+.   ..++|+.|++++|+++|.+|..+     ..++  +|+.+++++|.+  .+| ..+..+   
T Consensus       226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~--~L~~l~l~~n~~--~~p~~~~~~~~~~  301 (520)
T 2z7x_B          226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK--ALSIHQVVSDVF--GFPQSYIYEIFSN  301 (520)
T ss_dssp             EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC--EEEEEEEEECCC--CSCTHHHHHHHHT
T ss_pred             cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc--eeEeccccccce--ecchhhhhccccc
Confidence            7776666643322221   13567777777777777777766     6666  677777777777  233 233332   


Q ss_pred             CCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEE
Q 047927          697 CSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQII  776 (1005)
Q Consensus       697 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  776 (1005)
                      .+|++|++++|.+....  .+..+++|++|++++|++++..|.+++++++|++|++++|++.+....|..+..+++|++|
T Consensus       302 ~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L  379 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL  379 (520)
T ss_dssp             CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred             CceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence            46788888888776432  1267889999999999999988999999999999999999998622225667888999999


Q ss_pred             EccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCee
Q 047927          777 DLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNF  856 (1005)
Q Consensus       777 ~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l  856 (1005)
                      |+++|++.+.+|...+                                                ..++.|+.|++++|++
T Consensus       380 ~Ls~N~l~~~l~~~~~------------------------------------------------~~l~~L~~L~Ls~N~l  411 (520)
T 2z7x_B          380 DISQNSVSYDEKKGDC------------------------------------------------SWTKSLLSLNMSSNIL  411 (520)
T ss_dssp             ECCSSCCBCCGGGCSC------------------------------------------------CCCTTCCEEECCSSCC
T ss_pred             ECCCCcCCcccccchh------------------------------------------------ccCccCCEEECcCCCC
Confidence            9999999876664211                                                1357889999999999


Q ss_pred             eccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCccc-ccCCCCCCeEEccCCcccccCCC
Q 047927          857 EGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQ-LASLNFLSVLNLSYNHLVGRIPT  934 (1005)
Q Consensus       857 ~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~  934 (1005)
                      ++.+|..+.  ++|++|||++|+++ .+|..+..+++|+.|||++|++++ +|.. +..+++|++|++++|+++|.++.
T Consensus       412 ~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          412 TDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             Ccchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence            999988775  79999999999999 899989999999999999999995 5554 99999999999999999998763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=400.27  Aligned_cols=462  Identities=20%  Similarity=0.170  Sum_probs=314.1

Q ss_pred             cEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCC
Q 047927          192 QVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYN  271 (1005)
Q Consensus       192 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  271 (1005)
                      +++++++|.++. +|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|++++..|..++++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            467777777774 565555  78888888888888777778888888888888888888777888888888888888888


Q ss_pred             CCCCCCCCcccCCCCCcEEEcccccccc-cCchhhccCCCCCEEeecCCccCCCCCccCCCCCCC--cEEECcCCcC--c
Q 047927          272 ELLQGSLPDFHQNLSLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQL--VYLDMSFNHF--S  346 (1005)
Q Consensus       272 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~L~~n~l--~  346 (1005)
                      .+.  .++.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+   ..+..+++|  ++|++++|.+  .
T Consensus        80 ~l~--~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLV--KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCC--EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             cee--ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            775  34444 78888888888888887 467888888899999998888765   346666777  8899988888  5


Q ss_pred             cCCCccc-ccC-cccEEECCCCcCcCCCCcccccccccccEEEcCCCc-------CCCccCccCCCCCCCCEEeCcCccc
Q 047927          347 GPIPSLH-MFR-NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNN-------LGGSIPQSLFELPMVQHLLLADNQF  417 (1005)
Q Consensus       347 ~~~~~~~-~~~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~l  417 (1005)
                      +..+... .+. +...+++++|.+.+.++...+..+++|+.+++++|.       +.+.++ .+..+++|+.|++.+|.+
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l  232 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET  232 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence            4444322 222 344678888888887777778889999999999887       555554 678889999999988877


Q ss_pred             cccccccc--ccccccCCEEeCCCCccCCCCCccc-----cCcCCCcEEECCCCcceeccchhHHHhc---CCCCeEecc
Q 047927          418 DGHVTEIS--NASSSLLDTLDLSDNNLEGPIPLSF-----FELKNLKILLLSSNKFVGTIELDAIQRL---RNLFRLDLS  487 (1005)
Q Consensus       418 ~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~l~~l---~~L~~L~l~  487 (1005)
                      .+......  ....++|++|++++|.+++.+|..+     ..+++|+.+++++|.+  .+|...+..+   .+|+.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred             CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence            64322111  1113478888888888887888777     7778888888888777  4553334333   334444444


Q ss_pred             CCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCC
Q 047927          488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSL  567 (1005)
Q Consensus       488 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~  567 (1005)
                      +|.+..                         ++....+++|++|++++|++++                           
T Consensus       311 ~n~l~~-------------------------~~~~~~l~~L~~L~Ls~n~l~~---------------------------  338 (520)
T 2z7x_B          311 GTRMVH-------------------------MLCPSKISPFLHLDFSNNLLTD---------------------------  338 (520)
T ss_dssp             SSCCCC-------------------------CCCCSSCCCCCEEECCSSCCCT---------------------------
T ss_pred             CCcccc-------------------------ccchhhCCcccEEEeECCccCh---------------------------
Confidence            433221                         1111223333344444433332                           


Q ss_pred             CCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccC
Q 047927          568 EQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNAT  647 (1005)
Q Consensus       568 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  647 (1005)
                                                                                            .+|..+..++
T Consensus       339 ----------------------------------------------------------------------~~~~~~~~l~  348 (520)
T 2z7x_B          339 ----------------------------------------------------------------------TVFENCGHLT  348 (520)
T ss_dssp             ----------------------------------------------------------------------TTTTTCCCCS
T ss_pred             ----------------------------------------------------------------------hhhhhhccCC
Confidence                                                                                  2233334444


Q ss_pred             CCCeEEccCccccc--cCCchhhhcCcccccEEECCCCcCCcccc-CccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927          648 NLLVLDLSYNYLSG--MIPTCLINMSDSQLGVLNLRRNNLNGTVS-ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE  724 (1005)
Q Consensus       648 ~L~~L~Ls~N~l~~--~~p~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  724 (1005)
                      +|+.|++++|++++  .+|..+..++  +|++|++++|++++.+| ..+..+++|++|++++|++++..|..+.  ++|+
T Consensus       349 ~L~~L~L~~N~l~~l~~~~~~~~~l~--~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~  424 (520)
T 2z7x_B          349 ELETLILQMNQLKELSKIAEMTTQMK--SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK  424 (520)
T ss_dssp             SCCEEECCSSCCCBHHHHHHHHTTCT--TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred             CCCEEEccCCccCccccchHHHhhCC--CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence            55555555555543  3334455554  55555555555555233 3456666777777777777766666554  6788


Q ss_pred             EEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC-CCCCCCccEEEccCCcccccCChHHH-hhh
Q 047927          725 ILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY-NVSWPMLQIIDLASNKFSGRLPQKWL-LNL  795 (1005)
Q Consensus       725 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~l~~L~~L~ls~N~~~~~~p~~~~-~~l  795 (1005)
                      .|++++|+++ .+|.++..+++|++|++++|++++ +  |.. +..+++|+.|++++|++++.++..|+ ..|
T Consensus       425 ~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l--~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~  493 (520)
T 2z7x_B          425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-V--PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  493 (520)
T ss_dssp             EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C--CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred             EEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-c--CHHHhccCCcccEEECcCCCCcccCCchHHHHHH
Confidence            8888888877 566666688888888888888774 3  443 77788899999999999988887666 444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1e-40  Score=404.20  Aligned_cols=543  Identities=22%  Similarity=0.175  Sum_probs=351.4

Q ss_pred             EEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEccccc
Q 047927          217 VIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN  296 (1005)
Q Consensus       217 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~  296 (1005)
                      +.+.++-.+ ..+|..+.  +++++|+|++|+|++..+.+|.++++|++|+|++|.+.......|.++++|++|+|++|+
T Consensus        35 ~~~c~~~~l-~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNF-YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCC-SSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCc-CccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            344444444 34565543  478889999998887777788888888888888888766555567778888888888888


Q ss_pred             ccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCccc
Q 047927          297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIG  376 (1005)
Q Consensus       297 l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  376 (1005)
                      +++..+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+..                      ++.. 
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~----------------------~~~~-  168 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----------------------LPEY-  168 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC----------------------CCGG-
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC----------------------Cchh-
Confidence            77776677777788888888877777666666777777777777777765421                      1111 


Q ss_pred             ccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCC
Q 047927          377 WEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNL  456 (1005)
Q Consensus       377 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  456 (1005)
                      +..+++|++|++++|++++..+..+..+.+++.                     ....++++.|.+....+..+ ....+
T Consensus       169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~---------------------~~~~~~ls~n~l~~i~~~~~-~~~~~  226 (635)
T 4g8a_A          169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL---------------------LNLSLDLSLNPMNFIQPGAF-KEIRL  226 (635)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT---------------------CCCEEECTTCCCCEECTTTT-TTCEE
T ss_pred             hccchhhhhhcccCccccccccccccchhhhhh---------------------hhhhhhcccCcccccCcccc-cchhh
Confidence            344445555555555544333333322221111                     12234444444443333222 23345


Q ss_pred             cEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCC
Q 047927          457 KILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDN  536 (1005)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n  536 (1005)
                      +.+++.+|.....+....+..+..++...+..+........         +.        .....+.....+...++..+
T Consensus       227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l---------~~--------~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL---------EK--------FDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC---------SC--------CCTTTTGGGGGSEEEEEEEE
T ss_pred             hhhhhhcccccccccchhhcCCccccccccccccccccccc---------cc--------ccccccccccchhhhhhhhh
Confidence            66666666554445555666666666555433221100000         00        00000222223333333222


Q ss_pred             cCCCCC---ChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccC
Q 047927          537 QISGEI---PNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSS  613 (1005)
Q Consensus       537 ~l~~~~---p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~  613 (1005)
                      ......   +..+.  ....++.+++.++.+..+..   +.....++.|++.+|.+.+..+.                  
T Consensus       290 ~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~------------------  346 (635)
T 4g8a_A          290 YLDYYLDGIIDLFN--CLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTL------------------  346 (635)
T ss_dssp             CCCSCEEECTTTTG--GGTTCSEEEEESCEEEECGG---GGSCCCCSEEEEESCEESSCCCC------------------
T ss_pred             hhcccccchhhhhh--hhcccccccccccccccccc---cccchhhhhhhcccccccCcCcc------------------
Confidence            221110   11111  11234444444444433221   22234566666666665533222                  


Q ss_pred             CCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccc--cCCchhhhcCcccccEEECCCCcCCccccC
Q 047927          614 IPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSG--MIPTCLINMSDSQLGVLNLRRNNLNGTVSA  691 (1005)
Q Consensus       614 ~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~  691 (1005)
                             .+..++.+++..|......  ....+++|+.|++++|.+..  ..+..+..+.  +|+.+++..|.+... +.
T Consensus       347 -------~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~--~L~~L~~~~~~~~~~-~~  414 (635)
T 4g8a_A          347 -------KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI--SLKYLDLSFNGVITM-SS  414 (635)
T ss_dssp             -------BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCS--CCCEEECCSCSEEEE-CS
T ss_pred             -------cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhh--hhhhhhccccccccc-cc
Confidence                   2344556666666655432  34467889999999988753  4555666665  899999999887754 45


Q ss_pred             ccCCCCCccEEeCCCCeecccCc-ccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCC
Q 047927          692 TFPANCSLRTLDLNGNQLEGMVP-KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW  770 (1005)
Q Consensus       692 ~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l  770 (1005)
                      .+..+++|+.+++.+|+.....+ ..+..+++++.+++++|.+.+..|..+..+++|++|++++|++...+. |..+.  
T Consensus       415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~-~~~~~--  491 (635)
T 4g8a_A          415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFT--  491 (635)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE-CSCCT--
T ss_pred             cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccC-chhhh--
Confidence            67888999999999988876654 568889999999999999999999999999999999999987543220 22222  


Q ss_pred             CCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEE
Q 047927          771 PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSID  850 (1005)
Q Consensus       771 ~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  850 (1005)
                                                                                             .+++|+.||
T Consensus       492 -----------------------------------------------------------------------~l~~L~~L~  500 (635)
T 4g8a_A          492 -----------------------------------------------------------------------ELRNLTFLD  500 (635)
T ss_dssp             -----------------------------------------------------------------------TCTTCCEEE
T ss_pred             -----------------------------------------------------------------------hccccCEEE
Confidence                                                                                   245567777


Q ss_pred             CCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCC-CCCCeEEccCCccc
Q 047927          851 FSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL-NFLSVLNLSYNHLV  929 (1005)
Q Consensus       851 Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~  929 (1005)
                      |++|++++.+|..|+++++|++|+|++|+|++..|..++++++|++|||++|+|++.+|..+..+ ++|++|++++|+++
T Consensus       501 Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            88888888888999999999999999999999999999999999999999999999999999998 68999999999999


Q ss_pred             ccCC
Q 047927          930 GRIP  933 (1005)
Q Consensus       930 g~ip  933 (1005)
                      |.+.
T Consensus       581 C~C~  584 (635)
T 4g8a_A          581 CTCE  584 (635)
T ss_dssp             CSGG
T ss_pred             ccCC
Confidence            9764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.5e-41  Score=411.56  Aligned_cols=391  Identities=21%  Similarity=0.250  Sum_probs=234.5

Q ss_pred             CcCCCccCccCCCCCCCCEEeCcCccccc-----------------cccccc-ccccccCCEEeCCCCccCCCCCccccC
Q 047927          391 NNLGGSIPQSLFELPMVQHLLLADNQFDG-----------------HVTEIS-NASSSLLDTLDLSDNNLEGPIPLSFFE  452 (1005)
Q Consensus       391 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~  452 (1005)
                      |.+++ +|..+.++++|+.|++++|++++                 .++... +..+++|++|++++|.+.+.+|..+.+
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            44443 45555555555555555555554                 133222 234566777777777777888888888


Q ss_pred             cCCCcEEECCCCc-cee-ccchhHHHhcC-------CCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCC
Q 047927          453 LKNLKILLLSSNK-FVG-TIELDAIQRLR-------NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLR  523 (1005)
Q Consensus       453 l~~L~~L~L~~n~-l~~-~~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~  523 (1005)
                      +++|+.|++++|+ +++ .+|. .+..++       +|++|++++|.+..++........++|+.|++++|+++.+|.+.
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~  592 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFG  592 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCC
T ss_pred             CCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhc
Confidence            9999999999987 776 5553 355554       88888888888775554112334456777777777777777777


Q ss_pred             CCCceeEEECcCCcCCCCCChhhhhhcCCc-ccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcce
Q 047927          524 KQTKLYHLDLSDNQISGEIPNWLWKIGKDS-FNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAY  602 (1005)
Q Consensus       524 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  602 (1005)
                      .+++|++|++++|.+. .+|..+...  .. |+.|++++|.+..++........++|+.|++++|++.+.+|..+     
T Consensus       593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l--~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~-----  664 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIE-EIPEDFCAF--TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS-----  664 (876)
T ss_dssp             TTSEESEEECCSSCCS-CCCTTSCEE--CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-----
T ss_pred             CCCcceEEECcCCccc-cchHHHhhc--cccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch-----
Confidence            7778888888888777 666554332  23 44555555544433322111112224444444444443332111     


Q ss_pred             eeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhh--ccCCCCeEEccCccccccCCchhh-hcCcccccEEE
Q 047927          603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESIC--NATNLLVLDLSYNYLSGMIPTCLI-NMSDSQLGVLN  679 (1005)
Q Consensus       603 L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~~~L~~L~  679 (1005)
                                                            ..+.  .+++|+.|++++|+++ .+|..+. .++  +|+.|+
T Consensus       665 --------------------------------------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~--~L~~L~  703 (876)
T 4ecn_A          665 --------------------------------------CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGS--PISTII  703 (876)
T ss_dssp             --------------------------------------SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTC--CCSEEE
T ss_pred             --------------------------------------hhhccccCCCcCEEEccCCcCC-ccCHHHHccCC--CCCEEE
Confidence                                                  0111  2235555666666555 3444433 344  555555


Q ss_pred             CCCCcCCccccCccC-------CCCCccEEeCCCCeecccCccccc--CCCCCCEEECCCCcCCCCcchhhhcCCCCcEE
Q 047927          680 LRRNNLNGTVSATFP-------ANCSLRTLDLNGNQLEGMVPKSLA--NCSVLEILDLGNNQFDDTFPCWVKNASRLHVL  750 (1005)
Q Consensus       680 L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  750 (1005)
                      |++|+++...+..+.       ++++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|.++..+++|+.|
T Consensus       704 Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L  781 (876)
T 4ecn_A          704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF  781 (876)
T ss_dssp             CCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred             CCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence            555555532222222       2235666666666665 4455554  55556666666655554 45455555555544


Q ss_pred             ecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEE
Q 047927          751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITV  830 (1005)
Q Consensus       751 ~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (1005)
                      +|++|+                                                                          
T Consensus       782 ~Ls~N~--------------------------------------------------------------------------  787 (876)
T 4ecn_A          782 GIRHQR--------------------------------------------------------------------------  787 (876)
T ss_dssp             ECCCCB--------------------------------------------------------------------------
T ss_pred             ECCCCC--------------------------------------------------------------------------
Confidence            444442                                                                          


Q ss_pred             EEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcc
Q 047927          831 TIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPA  910 (1005)
Q Consensus       831 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~  910 (1005)
                                         ++++|++.+.+|..|+++++|+.|+|++|++ +.||..+.  ++|+.|||++|++....+.
T Consensus       788 -------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~  845 (876)
T 4ecn_A          788 -------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT  845 (876)
T ss_dssp             -------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred             -------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence                               2456777778888888888999999999998 68888766  6889999999988877777


Q ss_pred             cccCCCCCCeEEccCCcccc
Q 047927          911 QLASLNFLSVLNLSYNHLVG  930 (1005)
Q Consensus       911 ~l~~l~~L~~L~ls~N~l~g  930 (1005)
                      .+.....+..+.|++|++..
T Consensus       846 ~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          846 SVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             GGHHHHHTTCCEEECCTTSE
T ss_pred             HccccccchheeecCCCccc
Confidence            77666667777888877653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-39  Score=385.80  Aligned_cols=435  Identities=17%  Similarity=0.171  Sum_probs=293.8

Q ss_pred             ccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceE
Q 047927          430 SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTL  509 (1005)
Q Consensus       430 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L  509 (1005)
                      +++++|++++|.+++..+..|..+++|++|++++|+++ .+++..|.++++|++|++++|+++.++..    ..++|++|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC----PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCCEECSC----CCTTCSEE
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCCccCcc----ccccCCEE
Confidence            44666666666666666667778888888888888877 45556677788888888888887777654    35567777


Q ss_pred             EcCCccCcCCC--C-CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcc--cCCCCCCccccCC-cccEEE
Q 047927          510 SLASCKLSAIP--N-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLL--VSLEQPYSISDLT-SLSVLD  583 (1005)
Q Consensus       510 ~L~~n~l~~l~--~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~  583 (1005)
                      ++++|+++.++  . +..+++|++|++++|.+.+...   .....-.|+.|++++|.+  .... +..+..+. ..-.++
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~L~L~~L~L~~n~l~~~~~~-~~~l~~l~~~~l~l~  202 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL---LPVAHLHLSCILLDLVSYHIKGGE-TESLQIPNTTVLHLV  202 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT---GGGTTSCEEEEEEEESSCCCCSSS-CCEEEECCEEEEEEE
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCccccCch---hhhhhceeeEEEeecccccccccC-cccccccCcceEEEE
Confidence            77777777654  2 7777788888888887764222   121111236666666655  3221 11222221 111345


Q ss_pred             eccCcccccCCCC----CCCcceeeCcCCcC-----ccCCCcchhcccCceEEEEecCCcccccC----ChhhhccCCCC
Q 047927          584 LHSNQIQGKIPPL----PPNAAYVDYSGNNF-----TSSIPVDIGSFMSLSIFFSFSKNSLTGVI----PESICNATNLL  650 (1005)
Q Consensus       584 l~~n~l~~~~~~~----~~~l~~L~ls~n~~-----~~~~p~~~~~~~~~L~~L~l~~n~l~~~~----p~~l~~l~~L~  650 (1005)
                      +++|.+.+.++..    ..+++.+++++|..     .+.+ .. ....+.++.+++.++.+.+..    +..+ ..++|+
T Consensus       203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~  279 (562)
T 3a79_B          203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SE-LTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVE  279 (562)
T ss_dssp             ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HH-HHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEE
T ss_pred             ecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HH-HhccCcceEEEecCCcCcHHHHHHHHHhh-hccccc
Confidence            5556555544321    22445555555431     1100 01 112344455555544443211    1111 223677


Q ss_pred             eEEccCccccccCCchh-----hhcCcccccEEECCCCcCCcccc-CccCC---CCCccEEeCCCCeecccCcccccCCC
Q 047927          651 VLDLSYNYLSGMIPTCL-----INMSDSQLGVLNLRRNNLNGTVS-ATFPA---NCSLRTLDLNGNQLEGMVPKSLANCS  721 (1005)
Q Consensus       651 ~L~Ls~N~l~~~~p~~~-----~~l~~~~L~~L~L~~n~l~~~~~-~~~~~---l~~L~~L~L~~N~l~~~~p~~l~~l~  721 (1005)
                      +|++++|.++|.+|..+     ..+.  .|+.++++.|.+  .+| ..+..   ..+|++|++++|.+....  ....++
T Consensus       280 ~L~l~~n~l~~~ip~~~~~~~~~~L~--~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~  353 (562)
T 3a79_B          280 YLNIYNLTITERIDREEFTYSETALK--SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPS  353 (562)
T ss_dssp             EEEEEEEEECSCCCCCCCCCCSCSCC--EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred             EEEEeccEeeccccchhhhcccccch--heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCC
Confidence            77777777776666665     3343  444444455544  122 11111   146888999998886432  127889


Q ss_pred             CCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhc
Q 047927          722 VLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVD  801 (1005)
Q Consensus       722 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~  801 (1005)
                      +|++|++++|++++..|.+++++++|++|++++|++++....|..+..+++|+.|++++|++++.+|...+         
T Consensus       354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~---------  424 (562)
T 3a79_B          354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC---------  424 (562)
T ss_dssp             CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC---------
T ss_pred             CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh---------
Confidence            99999999999999999999999999999999999987332256788999999999999999987774321         


Q ss_pred             cCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCc
Q 047927          802 EGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALT  881 (1005)
Q Consensus       802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~  881 (1005)
                                                             ..++.|+.|++++|++++.+|..+.  ++|++|+|++|+++
T Consensus       425 ---------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~  463 (562)
T 3a79_B          425 ---------------------------------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM  463 (562)
T ss_dssp             ---------------------------------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred             ---------------------------------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence                                                   1357899999999999999888765  79999999999999


Q ss_pred             ccCchhhhcCCCCCEEeCCCCcCcccCccc-ccCCCCCCeEEccCCcccccCCC
Q 047927          882 GSIPSLIGNLREIESLDLSMNNLSGTIPAQ-LASLNFLSVLNLSYNHLVGRIPT  934 (1005)
Q Consensus       882 g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~  934 (1005)
                       .||..+.++++|+.|||++|++++ +|.. +..+++|++|++++|+++|.+|.
T Consensus       464 -~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          464 -SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             -CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             -ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence             799989999999999999999995 5655 99999999999999999998874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.9e-38  Score=376.33  Aligned_cols=463  Identities=20%  Similarity=0.170  Sum_probs=298.1

Q ss_pred             CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927          189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL  268 (1005)
Q Consensus       189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  268 (1005)
                      ...+++++++|.+++ +|..+.  ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus        31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            344788888888886 555554  78899999999988877788889999999999999998887888889999999999


Q ss_pred             CCCCCCCCCCCcccCCCCCcEEEccccccccc-CchhhccCCCCCEEeecCCccCCCCCccCCCCCCC--cEEECcCCcC
Q 047927          269 SYNELLQGSLPDFHQNLSLETLILSATNFSGI-LPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQL--VYLDMSFNHF  345 (1005)
Q Consensus       269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~L~~n~l  345 (1005)
                      ++|.+..  ++.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+.+.   .+..+++|  ++|++++|.+
T Consensus       108 s~N~l~~--lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          108 SHNRLQN--ISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             TTSCCCE--ECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             CCCcCCc--cCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            9998753  4444 788999999999998874 468899999999999999988763   34445555  9999999988


Q ss_pred             --ccCCCccccc-C-cccEEECCCCcCcCCCCcccccccccccEEEcCCCcCC----CccCccCCCCCCCCEEeCcCccc
Q 047927          346 --SGPIPSLHMF-R-NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLG----GSIPQSLFELPMVQHLLLADNQF  417 (1005)
Q Consensus       346 --~~~~~~~~~~-~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l  417 (1005)
                        .+..+..... . ..-.++++.|.+.+.++...+..+++|+.+++++|...    ......+..++.++.+++.++.+
T Consensus       182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l  261 (562)
T 3a79_B          182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET  261 (562)
T ss_dssp             CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred             cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence              6655543322 2 22356788888888777777888999999999988521    01223456778888888887766


Q ss_pred             ccccccc--cccccccCCEEeCCCCccCCCCCccc-----cCcCCCcEEECCCCcceeccchhHHHhc---CCCCeEecc
Q 047927          418 DGHVTEI--SNASSSLLDTLDLSDNNLEGPIPLSF-----FELKNLKILLLSSNKFVGTIELDAIQRL---RNLFRLDLS  487 (1005)
Q Consensus       418 ~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~l~~l---~~L~~L~l~  487 (1005)
                      .+.....  .....++|++|++++|.+++.+|..+     ..++.|+.+++..+.+  .+|...+..+   .+|++|+++
T Consensus       262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEE
T ss_pred             cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEcc
Confidence            5322111  01112367888888888877777766     5555555555555554  3343322221   223333333


Q ss_pred             CCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCC
Q 047927          488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSL  567 (1005)
Q Consensus       488 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~  567 (1005)
                      +|.+                         ..++....+++|++|++++|.+++                           
T Consensus       340 ~n~~-------------------------~~~~~~~~l~~L~~L~l~~n~l~~---------------------------  367 (562)
T 3a79_B          340 DTPF-------------------------IHMVCPPSPSSFTFLNFTQNVFTD---------------------------  367 (562)
T ss_dssp             SSCC-------------------------CCCCCCSSCCCCCEEECCSSCCCT---------------------------
T ss_pred             CCCc-------------------------ccccCccCCCCceEEECCCCcccc---------------------------
Confidence            3222                         111111223333333333333332                           


Q ss_pred             CCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccC
Q 047927          568 EQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNAT  647 (1005)
Q Consensus       568 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  647 (1005)
                                                                                            .+|..+..++
T Consensus       368 ----------------------------------------------------------------------~~~~~~~~l~  377 (562)
T 3a79_B          368 ----------------------------------------------------------------------SVFQGCSTLK  377 (562)
T ss_dssp             ----------------------------------------------------------------------TTTTTCCSCS
T ss_pred             ----------------------------------------------------------------------chhhhhcccC
Confidence                                                                                  2233334444


Q ss_pred             CCCeEEccCccccc--cCCchhhhcCcccccEEECCCCcCCc-cccCccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927          648 NLLVLDLSYNYLSG--MIPTCLINMSDSQLGVLNLRRNNLNG-TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE  724 (1005)
Q Consensus       648 ~L~~L~Ls~N~l~~--~~p~~~~~l~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  724 (1005)
                      +|+.|++++|++++  .+|..+..++  +|++|++++|++++ ..+..+..+++|++|++++|++++..|..+.  ++|+
T Consensus       378 ~L~~L~L~~N~l~~~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~  453 (562)
T 3a79_B          378 RLQTLILQRNGLKNFFKVALMTKNMS--SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVK  453 (562)
T ss_dssp             SCCEEECCSSCCCBTTHHHHTTTTCT--TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS
T ss_pred             CCCEEECCCCCcCCcccchhhhcCCC--CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCC
Confidence            45555555555443  1223344444  55555555555555 2223455666666677777766665555443  5677


Q ss_pred             EEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC-CCCCCCccEEEccCCcccccCChHHH
Q 047927          725 ILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY-NVSWPMLQIIDLASNKFSGRLPQKWL  792 (1005)
Q Consensus       725 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~l~~L~~L~ls~N~~~~~~p~~~~  792 (1005)
                      +|++++|+++ .+|.++..+++|++|+|++|++++ +  |.. +..+++|+.|++++|++.|.+|..++
T Consensus       454 ~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l--~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-V--PDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-C--CTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-C--CHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence            7777777776 455555577777777777777763 2  443 67788888888888888888887665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.4e-38  Score=361.66  Aligned_cols=304  Identities=21%  Similarity=0.237  Sum_probs=187.6

Q ss_pred             cccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccC
Q 047927          353 HMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLL  432 (1005)
Q Consensus       353 ~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L  432 (1005)
                      .....|++|++++|.+ +.+|.. ++++++|++|++++|.+.+.+|..++.+.+|+.+++.+|.            ...+
T Consensus         8 ~~~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~~~l   73 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------DRQA   73 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------HHTC
T ss_pred             cccccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------ccCC
Confidence            3445777777777777 577766 7888899999999988888888888888887777666653            2457


Q ss_pred             CEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcC
Q 047927          433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLA  512 (1005)
Q Consensus       433 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~  512 (1005)
                      ++|++++|.+++ +|..   .++|+.|++++|.+++ ++.    .+++|++|++++|+++.++.     .++.|++|+++
T Consensus        74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~  139 (454)
T 1jl5_A           74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD-----LPPLLEYLGVS  139 (454)
T ss_dssp             SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS-----CCTTCCEEECC
T ss_pred             CEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC-----CCCCCCEEECc
Confidence            888888888875 3331   3688899999988874 553    24788888888888876543     34679999999


Q ss_pred             CccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCccccc
Q 047927          513 SCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGK  592 (1005)
Q Consensus       513 ~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  592 (1005)
                      +|+++.+|.+..+++|++|++++|++++ +|...     .+|++|++++|++..++   .+..+++|++|++++|.+++ 
T Consensus       140 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~~-----~~L~~L~L~~n~l~~l~---~~~~l~~L~~L~l~~N~l~~-  209 (454)
T 1jl5_A          140 NNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLP-----PSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKK-  209 (454)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCCC-----TTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSS-
T ss_pred             CCCCCCCcccCCCCCCCEEECCCCcCcc-cCCCc-----ccccEEECcCCcCCcCc---cccCCCCCCEEECCCCcCCc-
Confidence            9999999889999999999999999885 55432     36888888888887764   36677788888888877764 


Q ss_pred             CCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCc
Q 047927          593 IPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSD  672 (1005)
Q Consensus       593 ~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  672 (1005)
                      +|..+                         ..|++|++++|.++ .+| .+..+++|+.|++++|++++ +|...   . 
T Consensus       210 l~~~~-------------------------~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~---~-  257 (454)
T 1jl5_A          210 LPDLP-------------------------LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLP---P-  257 (454)
T ss_dssp             CCCCC-------------------------TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCC---T-
T ss_pred             CCCCc-------------------------CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccc---c-
Confidence            33221                         24445555555554 344 25666667777777776663 33321   2 


Q ss_pred             ccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCC
Q 047927          673 SQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD  735 (1005)
Q Consensus       673 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  735 (1005)
                       +|+.|++++|++++. |..   .++|++|++++|++++. |..   .++|++|++++|++++
T Consensus       258 -~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~  311 (454)
T 1jl5_A          258 -SLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS  311 (454)
T ss_dssp             -TCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE
T ss_pred             -ccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc
Confidence             566666666666652 222   24556666666665542 110   1455555555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.9e-38  Score=357.34  Aligned_cols=378  Identities=22%  Similarity=0.313  Sum_probs=192.3

Q ss_pred             ccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcC-------------CCCeEeccCCeeeEecC
Q 047927          430 SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLR-------------NLFRLDLSYNRLAVVAG  496 (1005)
Q Consensus       430 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~-------------~L~~L~l~~n~l~~~~~  496 (1005)
                      ..|++|++++|.+ +.+|..++++++|++|++++|.+.|.+|. .+..++             ++++|++++|.++.++.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence            3456666666666 46666677777777777777776655543 233333             45777777777666543


Q ss_pred             CcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccC
Q 047927          497 SSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDL  576 (1005)
Q Consensus       497 ~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l  576 (1005)
                           .++.|++|++++|.++.+|..  .++|++|++++|++++ +|..     ...+++|++++|++..++   .+..+
T Consensus        89 -----~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~-l~~~-----~~~L~~L~L~~n~l~~lp---~~~~l  152 (454)
T 1jl5_A           89 -----LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKA-LSDL-----PPLLEYLGVSNNQLEKLP---ELQNS  152 (454)
T ss_dssp             -----CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCSC-----CTTCCEEECCSSCCSSCC---CCTTC
T ss_pred             -----CcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCc-ccCC-----CCCCCEEECcCCCCCCCc---ccCCC
Confidence                 345677777777777776652  3677777777777764 2221     145777777777777654   36667


Q ss_pred             CcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccC
Q 047927          577 TSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSY  656 (1005)
Q Consensus       577 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  656 (1005)
                      ++|++|++++|++++ +|..+.+                         |++|++++|.+++ +| .++.+++|+.|++++
T Consensus       153 ~~L~~L~l~~N~l~~-lp~~~~~-------------------------L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKK-LPDLPPS-------------------------LEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN  204 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCCCTT-------------------------CCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred             CCCCEEECCCCcCcc-cCCCccc-------------------------ccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence            777777777777664 4444344                         4555555555554 33 355566666666666


Q ss_pred             ccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCC
Q 047927          657 NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT  736 (1005)
Q Consensus       657 N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  736 (1005)
                      |++++ +|...   .  +|++|++++|+++ .+| .+..+++|++|++++|++++ +|..   .++|+.|++++|++++ 
T Consensus       205 N~l~~-l~~~~---~--~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-  271 (454)
T 1jl5_A          205 NSLKK-LPDLP---L--SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-  271 (454)
T ss_dssp             SCCSS-CCCCC---T--TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-
T ss_pred             CcCCc-CCCCc---C--cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-
Confidence            66653 33221   1  5666666666665 333 25566666666666666664 3322   2566666666666665 


Q ss_pred             cchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhhee
Q 047927          737 FPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRF  816 (1005)
Q Consensus       737 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~  816 (1005)
                      +|..   .++|++|++++|++++.   |..   .++|+.|++++|++++. |.                           
T Consensus       272 l~~~---~~~L~~L~ls~N~l~~l---~~~---~~~L~~L~l~~N~l~~i-~~---------------------------  314 (454)
T 1jl5_A          272 LPEL---PQSLTFLDVSENIFSGL---SEL---PPNLYYLNASSNEIRSL-CD---------------------------  314 (454)
T ss_dssp             CCCC---CTTCCEEECCSSCCSEE---SCC---CTTCCEEECCSSCCSEE-CC---------------------------
T ss_pred             cCcc---cCcCCEEECcCCccCcc---cCc---CCcCCEEECcCCcCCcc-cC---------------------------
Confidence            3332   25566666666666542   110   14566666666665531 10                           


Q ss_pred             cccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCE
Q 047927          817 LNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIES  896 (1005)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~  896 (1005)
                                               ..+.|+.|++++|++++ +|..   +++|++|++++|+++ .+|.   .+++|++
T Consensus       315 -------------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~  361 (454)
T 1jl5_A          315 -------------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQ  361 (454)
T ss_dssp             -------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred             -------------------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccE
Confidence                                     01245666666666664 4543   356666666666666 3554   3566666


Q ss_pred             EeCCCCcCcc--cCcccccCC-------------CCCCeEEccCCcccc--cCCCCC
Q 047927          897 LDLSMNNLSG--TIPAQLASL-------------NFLSVLNLSYNHLVG--RIPTST  936 (1005)
Q Consensus       897 LdLs~N~l~~--~ip~~l~~l-------------~~L~~L~ls~N~l~g--~ip~~~  936 (1005)
                      ||+++|++++  .+|.++.+|             ++|++||+++|+++|  .||...
T Consensus       362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl  418 (454)
T 1jl5_A          362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV  418 (454)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred             EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence            6666666666  566666555             789999999999998  888654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.8e-37  Score=356.04  Aligned_cols=374  Identities=19%  Similarity=0.186  Sum_probs=282.1

Q ss_pred             eEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC--CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCC
Q 047927          483 RLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLS  560 (1005)
Q Consensus       483 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~  560 (1005)
                      .++.++++++.++.     .++.|++|++++|.++.++.  +..+++|++|++++|.+.+.++                 
T Consensus        14 ~~~c~~~~l~~lp~-----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-----------------   71 (455)
T 3v47_A           14 NAICINRGLHQVPE-----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-----------------   71 (455)
T ss_dssp             EEECCSSCCSSCCC-----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----------------
T ss_pred             ccCcCCCCcccCCC-----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-----------------
Confidence            34444444444442     23445555555555554422  5555555555555555543332                 


Q ss_pred             CCcccCCCCCCccccCCcccEEEeccCcccccCCCC---CCCcceeeCcCCcCccCCCcc-hhcccCceEEEEecCCccc
Q 047927          561 HNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPL---PPNAAYVDYSGNNFTSSIPVD-IGSFMSLSIFFSFSKNSLT  636 (1005)
Q Consensus       561 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~ls~n~~~~~~p~~-~~~~~~~L~~L~l~~n~l~  636 (1005)
                               +..+..+++|++|++++|++++..|..   ..++++|++++|++++.+|.. ....++.|++|++++|.++
T Consensus        72 ---------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  142 (455)
T 3v47_A           72 ---------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK  142 (455)
T ss_dssp             ---------TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred             ---------cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC
Confidence                     223444555555555555555544432   235555556666555433332 2335788999999999999


Q ss_pred             ccCChh-hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCcc--------CCCCCccEEeCCCC
Q 047927          637 GVIPES-ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATF--------PANCSLRTLDLNGN  707 (1005)
Q Consensus       637 ~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~N  707 (1005)
                      +..|.. +..+++|++|++++|++++..|..+..+...+|+.|++++|.+.+..+..+        ..+++|++|++++|
T Consensus       143 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN  222 (455)
T ss_dssp             SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred             ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence            887876 889999999999999999888888888754489999999999988766543        36689999999999


Q ss_pred             eecccCcccccCC---CCCCEEECCCCcCCCC----------cchhhhc--CCCCcEEecCCCcCCcccCCCCCCCCCCC
Q 047927          708 QLEGMVPKSLANC---SVLEILDLGNNQFDDT----------FPCWVKN--ASRLHVLILRSNNFFGNISCPRYNVSWPM  772 (1005)
Q Consensus       708 ~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~----------~p~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  772 (1005)
                      ++++..|..+...   ++|+.|++++|.+.+.          .+..+..  .++|++|++++|++.+..  |..+..+++
T Consensus       223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~  300 (455)
T 3v47_A          223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL--KSVFSHFTD  300 (455)
T ss_dssp             CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC--TTTTTTCTT
T ss_pred             cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc--hhhcccCCC
Confidence            9998888777654   8999999999865542          2223333  368999999999999876  888999999


Q ss_pred             ccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECC
Q 047927          773 LQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFS  852 (1005)
Q Consensus       773 L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  852 (1005)
                      |+.|++++|++.+..|..+                                                 ..++.|+.|+|+
T Consensus       301 L~~L~Ls~n~l~~~~~~~~-------------------------------------------------~~l~~L~~L~Ls  331 (455)
T 3v47_A          301 LEQLTLAQNEINKIDDNAF-------------------------------------------------WGLTHLLKLNLS  331 (455)
T ss_dssp             CCEEECTTSCCCEECTTTT-------------------------------------------------TTCTTCCEEECC
T ss_pred             CCEEECCCCcccccChhHh-------------------------------------------------cCcccCCEEECC
Confidence            9999999999997766432                                                 146789999999


Q ss_pred             CCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccC
Q 047927          853 RNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRI  932 (1005)
Q Consensus       853 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  932 (1005)
                      +|++++..|..++++++|++|+|++|++++.+|..++++++|++|||++|++++..+..+..+++|++|++++|+++|.+
T Consensus       332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            99999999999999999999999999999999999999999999999999999888888899999999999999999999


Q ss_pred             CCCCcc
Q 047927          933 PTSTQL  938 (1005)
Q Consensus       933 p~~~~~  938 (1005)
                      |....+
T Consensus       412 ~~~~~l  417 (455)
T 3v47_A          412 PRIDYL  417 (455)
T ss_dssp             TTTHHH
T ss_pred             CcchHH
Confidence            965444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.4e-38  Score=342.37  Aligned_cols=293  Identities=28%  Similarity=0.404  Sum_probs=209.3

Q ss_pred             CCCcHHHHHHHHHHhhhCCCCCCCcccccCCCCCCCCcc--cceeEECCC---CCEEEEEcCCCCccc--ccCCCccccc
Q 047927            6 GQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCT--WSGVDCDEA---GRVIGLDLSEESISA--GIDNSSSLFS   78 (1005)
Q Consensus         6 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~---~~v~~L~L~~~~l~~--~~~~~~~l~~   78 (1005)
                      +.|.++|++||++||+++.+ |.   .+++|..+.+||.  |.||.|+..   ++|++|+++++.+.+  .+  +..+.+
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~-~~---~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~--~~~l~~   74 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGN-PT---TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI--PSSLAN   74 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTC-CG---GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC--CGGGGG
T ss_pred             CCCCHHHHHHHHHHHHhcCC-cc---cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc--ChhHhC
Confidence            46999999999999999964 42   6899988889998  999999864   799999999999988  66  788999


Q ss_pred             ccccceeecCC-ccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhh
Q 047927           79 LKYLQSLNLAF-NMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLL  157 (1005)
Q Consensus        79 l~~L~~L~Ls~-~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l  157 (1005)
                      +++|++|++++ |.+.+. +|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.++....        ..+
T Consensus        75 l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~  145 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP--------PSI  145 (313)
T ss_dssp             CTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC--------GGG
T ss_pred             CCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC--------hHH
Confidence            99999999995 888766 89999999999999999999998899999999999999999887653110        001


Q ss_pred             hcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCC-CCcEEECCCCCCCCCcchhccCC
Q 047927          158 QNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLR-SLSVIRLDMNDLYSPVPEFLADF  236 (1005)
Q Consensus       158 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~l~~l  236 (1005)
                      .++                            ++|++|++++|.+++.+|..+.+++ +|++|++++|.+.+.+|..+..+
T Consensus       146 ~~l----------------------------~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l  197 (313)
T 1ogq_A          146 SSL----------------------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             GGC----------------------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             hcC----------------------------CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence            111                            5555666666666666666677766 77777777777766666666666


Q ss_pred             CCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEee
Q 047927          237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEF  316 (1005)
Q Consensus       237 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  316 (1005)
                      + |++|++++|.+++..|..+..+++|++|++++|.+. ...+.+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus       198 ~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  275 (313)
T 1ogq_A          198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence            5 777777777777666666677777777777766542 22333444555555555555555555555555555555555


Q ss_pred             cCCccCCCCCccCCCCCCCcEEECcCCc
Q 047927          317 YLCNFNGPIPTSMSDLSQLVYLDMSFNH  344 (1005)
Q Consensus       317 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~  344 (1005)
                      ++|.+++.+|.. ..+++|+.+++++|.
T Consensus       276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          276 SFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cCCcccccCCCC-ccccccChHHhcCCC
Confidence            555555444443 444555555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.8e-35  Score=339.18  Aligned_cols=374  Identities=21%  Similarity=0.174  Sum_probs=243.1

Q ss_pred             ccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEE
Q 047927          381 LNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILL  460 (1005)
Q Consensus       381 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  460 (1005)
                      ++|++|++++|.+++..|..+.++++|++|++++|.+.+.++......+++|++|++++|.+++..|..|..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            34555555555555444445555555555555555444333333333345556666666666666677777777777777


Q ss_pred             CCCCcceeccc-hhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCC
Q 047927          461 LSSNKFVGTIE-LDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQIS  539 (1005)
Q Consensus       461 L~~n~l~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~  539 (1005)
                      +++|++.+.++ ...+..+++|++|++++|.+..+....+                      +..+++|++|++++|.+.
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------------------~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF----------------------FLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG----------------------GGGCTTCCEEECTTCCBS
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc----------------------cCCCCcccEEeCCCCccc
Confidence            77777764332 1235566666666666666554433222                      344455555555555555


Q ss_pred             CCCChhhhhhcCCcccEEeCCCCcccCCCCCC-------ccccCCcccEEEeccCcccccCCCC------CCCcceeeCc
Q 047927          540 GEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPY-------SISDLTSLSVLDLHSNQIQGKIPPL------PPNAAYVDYS  606 (1005)
Q Consensus       540 ~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~ls  606 (1005)
                      +..|..+.......++.|++++|.+..++...       .+..+++|++|++++|++.+.+|..      ..+++.++++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            55555444444445555555555554442211       1223456666666666665443321      1233344444


Q ss_pred             CCcCccCCCcchhcccCceEEEEecCCcccccCChhhhc--cCCCCeEEccCccccccCCchhhhcCcccccEEECCCCc
Q 047927          607 GNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICN--ATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN  684 (1005)
Q Consensus       607 ~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~  684 (1005)
                      +|...+...               ..+.+.+..+..+..  .++|+.|++++|++++..|..+..++  +|++|++++|+
T Consensus       248 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~  310 (455)
T 3v47_A          248 NSYNMGSSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT--DLEQLTLAQNE  310 (455)
T ss_dssp             TCTTTSCCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT--TCCEEECTTSC
T ss_pred             ccccccccc---------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCC--CCCEEECCCCc
Confidence            333322110               011122222223333  36899999999999988899999888  89999999999


Q ss_pred             CCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCC
Q 047927          685 LNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCP  764 (1005)
Q Consensus       685 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  764 (1005)
                      +++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|.+|..+++|++|++++|++++..  +
T Consensus       311 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~  388 (455)
T 3v47_A          311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP--D  388 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--T
T ss_pred             ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC--H
Confidence            99999999999999999999999999888999999999999999999999998999999999999999999998754  5


Q ss_pred             CCCCCCCCccEEEccCCcccccCCh-HHHhhh
Q 047927          765 RYNVSWPMLQIIDLASNKFSGRLPQ-KWLLNL  795 (1005)
Q Consensus       765 ~~~~~l~~L~~L~ls~N~~~~~~p~-~~~~~l  795 (1005)
                      ..+..+++|+.|++++|++++.+|. .++..|
T Consensus       389 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~  420 (455)
T 3v47_A          389 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW  420 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred             hHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence            5678899999999999999999993 444333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.5e-35  Score=332.58  Aligned_cols=361  Identities=18%  Similarity=0.159  Sum_probs=228.0

Q ss_pred             CCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCC
Q 047927          445 PIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRK  524 (1005)
Q Consensus       445 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~  524 (1005)
                      ..+..++.+++|++|++++|.+.+ ++  .+..+++|++|++++|+++.++    ....+.|++|++++|+++.++ +..
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~-~~~  104 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD-VTP  104 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTT
T ss_pred             ccccChhHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceee-cCC
Confidence            334456666677777777776663 33  4566666666666666665543    223345666666666666654 666


Q ss_pred             CCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceee
Q 047927          525 QTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVD  604 (1005)
Q Consensus       525 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  604 (1005)
                      +++|++|++++|++++ +|  +.  ...+|++|++++|+++.++    +..+++|++|++++|+..+.++          
T Consensus       105 l~~L~~L~L~~N~l~~-l~--~~--~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----------  165 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTK-LD--VS--QNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD----------  165 (457)
T ss_dssp             CTTCCEEECCSSCCSC-CC--CT--TCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC----------
T ss_pred             CCcCCEEECCCCcCCe-ec--CC--CCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccc----------
Confidence            6677777777776664 22  21  2244555555555555541    3445566666666664433221          


Q ss_pred             CcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCc
Q 047927          605 YSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN  684 (1005)
Q Consensus       605 ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~  684 (1005)
                                   + ..++.|++|++++|++++. |  +..+++|+.|++++|++++.   .+..++  +|++|++++|+
T Consensus       166 -------------~-~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~--~L~~L~Ls~N~  223 (457)
T 3bz5_A          166 -------------V-TPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNI--QLTFLDCSSNK  223 (457)
T ss_dssp             -------------C-TTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCT--TCSEEECCSSC
T ss_pred             -------------c-ccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCC--CCCEEECcCCc
Confidence                         1 1245556666666666552 3  55566666666666666643   244554  66666666666


Q ss_pred             CCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCC
Q 047927          685 LNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCP  764 (1005)
Q Consensus       685 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  764 (1005)
                      +++. |  +..+++|++|++++|++++..   +..+++|+.|++++|              +|+.|++++|++.+.+  |
T Consensus       224 l~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~--~  281 (457)
T 3bz5_A          224 LTEI-D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF--Q  281 (457)
T ss_dssp             CSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE--E
T ss_pred             cccc-C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc--c
Confidence            6652 3  555666666666666666542   334555556655554              3456777777777765  3


Q ss_pred             CCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcc
Q 047927          765 RYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILN  844 (1005)
Q Consensus       765 ~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  844 (1005)
                        ...+++|+.|++++|++.+.+|... ..+              ..     +.                     ....+
T Consensus       282 --~~~l~~L~~L~Ls~n~~l~~l~~~~-~~L--------------~~-----L~---------------------l~~~~  318 (457)
T 3bz5_A          282 --AEGCRKIKELDVTHNTQLYLLDCQA-AGI--------------TE-----LD---------------------LSQNP  318 (457)
T ss_dssp             --CTTCTTCCCCCCTTCTTCCEEECTT-CCC--------------SC-----CC---------------------CTTCT
T ss_pred             --ccccccCCEEECCCCcccceeccCC-Ccc--------------eE-----ec---------------------hhhcc
Confidence              3567888888888888877776311 000              00     00                     01346


Q ss_pred             cceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEcc
Q 047927          845 IFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLS  924 (1005)
Q Consensus       845 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls  924 (1005)
                      .|+.|++++|+++|. |  ++++++|+.||+++|++++        ++.|+.|++++|+++|.     +++..|..++++
T Consensus       319 ~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~  382 (457)
T 3bz5_A          319 KLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLT  382 (457)
T ss_dssp             TCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred             cCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccc
Confidence            789999999999984 4  9999999999999999996        24667788999999987     355678899999


Q ss_pred             CCcccccCCCC
Q 047927          925 YNHLVGRIPTS  935 (1005)
Q Consensus       925 ~N~l~g~ip~~  935 (1005)
                      +|+++|.||..
T Consensus       383 ~N~l~g~ip~~  393 (457)
T 3bz5_A          383 NNSLTIAVSPD  393 (457)
T ss_dssp             TTBEEEECCTT
T ss_pred             cCcEEEEcChh
Confidence            99999999975

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.6e-35  Score=320.56  Aligned_cols=259  Identities=29%  Similarity=0.473  Sum_probs=192.3

Q ss_pred             CceEEEEecCCcccc--cCChhhhccCCCCeEEccC-ccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCc
Q 047927          623 SLSIFFSFSKNSLTG--VIPESICNATNLLVLDLSY-NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSL  699 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  699 (1005)
                      ..++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..+..++  +|++|++++|++++.+|..|..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT--TCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC--CCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            356666666666666  6666666666666666663 666666666666655  55555555555555555555555555


Q ss_pred             cEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCC-CccEEEc
Q 047927          700 RTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP-MLQIIDL  778 (1005)
Q Consensus       700 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l  778 (1005)
                      ++|++++|.+++.+|..+..+++|++|++++|++++.+|..                          +..++ .|+.|++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--------------------------l~~l~~~L~~L~L  181 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--------------------------YGSFSKLFTSMTI  181 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG--------------------------GGCCCTTCCEEEC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH--------------------------HhhhhhcCcEEEC
Confidence            55555555555555555555555555555555555444444                          44444 5666666


Q ss_pred             cCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeec
Q 047927          779 ASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG  858 (1005)
Q Consensus       779 s~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g  858 (1005)
                      ++|++++.+|..+.                                                 .++ |+.|++++|++++
T Consensus       182 ~~N~l~~~~~~~~~-------------------------------------------------~l~-L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          182 SRNRLTGKIPPTFA-------------------------------------------------NLN-LAFVDLSRNMLEG  211 (313)
T ss_dssp             CSSEEEEECCGGGG-------------------------------------------------GCC-CSEEECCSSEEEE
T ss_pred             cCCeeeccCChHHh-------------------------------------------------CCc-ccEEECcCCcccC
Confidence            66666666664321                                                 233 7899999999999


Q ss_pred             cCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCCcc
Q 047927          859 PIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQL  938 (1005)
Q Consensus       859 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~  938 (1005)
                      .+|..++.+++|++|+|++|++++.+|. ++.+++|++|||++|+++|.+|..+..+++|++||+++|+++|.+|...++
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l  290 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL  290 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccc
Confidence            9999999999999999999999988777 889999999999999999999999999999999999999999999998888


Q ss_pred             cccccccccCCCCCCCCCCCCC
Q 047927          939 QSFLATSFEGNDRLWGPPLNVC  960 (1005)
Q Consensus       939 ~~~~~~~~~gn~~lc~~~~~~c  960 (1005)
                      ..+....+.||+.+||.|...|
T Consensus       291 ~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          291 QRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCC
T ss_pred             cccChHHhcCCCCccCCCCCCC
Confidence            8888899999999999998777

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.5e-35  Score=334.84  Aligned_cols=128  Identities=18%  Similarity=0.149  Sum_probs=96.9

Q ss_pred             EEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCC
Q 047927          628 FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGN  707 (1005)
Q Consensus       628 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  707 (1005)
                      +++++|.+.+.+|  +..+++|+.|++++|...+.+|..   ..  +|+.|++++|             ++|++|++++|
T Consensus       269 L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~--~L~~L~l~~~-------------~~L~~L~L~~N  328 (457)
T 3bz5_A          269 IDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AA--GITELDLSQN-------------PKLVYLYLNNT  328 (457)
T ss_dssp             CCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TC--CCSCCCCTTC-------------TTCCEEECTTC
T ss_pred             EECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CC--cceEechhhc-------------ccCCEEECCCC
Confidence            3444455444554  356788888889888887777742   22  6667766655             58999999999


Q ss_pred             eecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccC
Q 047927          708 QLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRL  787 (1005)
Q Consensus       708 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~  787 (1005)
                      ++++. +  +..+++|+.|++++|++++        ++.|..|++++|+++|.       ..+..|+.+++++|+++|.+
T Consensus       329 ~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~i  390 (457)
T 3bz5_A          329 ELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAV  390 (457)
T ss_dssp             CCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEEC
T ss_pred             ccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-------ceeeecCccccccCcEEEEc
Confidence            99984 3  8899999999999999986        35677778999999875       24566788899999999999


Q ss_pred             ChHHHh
Q 047927          788 PQKWLL  793 (1005)
Q Consensus       788 p~~~~~  793 (1005)
                      |..++.
T Consensus       391 p~~~~~  396 (457)
T 3bz5_A          391 SPDLLD  396 (457)
T ss_dssp             CTTCBC
T ss_pred             ChhHhc
Confidence            977654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=333.13  Aligned_cols=347  Identities=17%  Similarity=0.161  Sum_probs=279.7

Q ss_pred             eEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCC
Q 047927          529 YHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGN  608 (1005)
Q Consensus       529 ~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n  608 (1005)
                      +.++.+++.++ .+|..+    ...++.|++++|.+..+. +..+..+++|++|++++|.+++..|              
T Consensus        14 ~~v~c~~~~l~-~ip~~~----~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~--------------   73 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI----PTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEP--------------   73 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC----CTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECT--------------
T ss_pred             CEEEeCCCCcC-cCCCCC----CCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccCEeCh--------------
Confidence            46777777776 556543    245777777777776653 2345666777777777777664433              


Q ss_pred             cCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCcc
Q 047927          609 NFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT  688 (1005)
Q Consensus       609 ~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~  688 (1005)
                             ..+. .++.|++|++++|.+++..+..|.++++|++|+|++|++++..|..+..++  +|++|++++|.+++.
T Consensus        74 -------~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~l~~n~l~~~  143 (477)
T 2id5_A           74 -------GAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY--NLKSLEVGDNDLVYI  143 (477)
T ss_dssp             -------TTTT-TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEEECCTTCCEE
T ss_pred             -------hhhh-CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc--cCCEEECCCCcccee
Confidence                   2222 467888888888888877777788899999999999999888888888887  899999999999988


Q ss_pred             ccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCC
Q 047927          689 VSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNV  768 (1005)
Q Consensus       689 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  768 (1005)
                      .+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+.+  |....
T Consensus       144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~  221 (477)
T 2id5_A          144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM--TPNCL  221 (477)
T ss_dssp             CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE--CTTTT
T ss_pred             ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc--Ccccc
Confidence            8888999999999999999999877788899999999999999999888888999999999999999887776  66666


Q ss_pred             CCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceE
Q 047927          769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS  848 (1005)
Q Consensus       769 ~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  848 (1005)
                      ...+|+.|++++|++++ +|...+                                                ..+++|+.
T Consensus       222 ~~~~L~~L~l~~n~l~~-~~~~~~------------------------------------------------~~l~~L~~  252 (477)
T 2id5_A          222 YGLNLTSLSITHCNLTA-VPYLAV------------------------------------------------RHLVYLRF  252 (477)
T ss_dssp             TTCCCSEEEEESSCCCS-CCHHHH------------------------------------------------TTCTTCCE
T ss_pred             cCccccEEECcCCcccc-cCHHHh------------------------------------------------cCccccCe
Confidence            77789999999998874 443222                                                24678999


Q ss_pred             EECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcc
Q 047927          849 IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL  928 (1005)
Q Consensus       849 L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l  928 (1005)
                      |+|++|++++..+..|.++++|+.|+|++|++++..|..+.++++|+.|||++|++++..+..|..+++|++|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999998888999999999999999999


Q ss_pred             cccCCCCCcccccccccccCCCCCCCCC
Q 047927          929 VGRIPTSTQLQSFLATSFEGNDRLWGPP  956 (1005)
Q Consensus       929 ~g~ip~~~~~~~~~~~~~~gn~~lc~~~  956 (1005)
                      +|.++....+.......+.++...|+.|
T Consensus       333 ~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          333 ACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             ECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             cCccchHhHHhhhhccccCccCceeCCc
Confidence            9876532222222334566777777544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.7e-33  Score=320.81  Aligned_cols=347  Identities=27%  Similarity=0.350  Sum_probs=247.9

Q ss_pred             CcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEE
Q 047927          452 ELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHL  531 (1005)
Q Consensus       452 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L  531 (1005)
                      .+++++.|+++++.+. .++  .+..+++|++|++++|.++.+                         +.+..+++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~-------------------------~~~~~l~~L~~L   95 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDI-------------------------TPLKNLTKLVDI   95 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-------------------------GGGTTCTTCCEE
T ss_pred             HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCc-------------------------hhhhccccCCEE
Confidence            3456666666666655 333  245555555555555555444                         334444555555


Q ss_pred             ECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCc
Q 047927          532 DLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT  611 (1005)
Q Consensus       532 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~  611 (1005)
                      ++++|.+.+..+  +.  ....|++|++++|.+..++.   +..+++|++|++++|.+.+. +                 
T Consensus        96 ~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~-----------------  150 (466)
T 1o6v_A           96 LMNNNQIADITP--LA--NLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI-S-----------------  150 (466)
T ss_dssp             ECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCC-G-----------------
T ss_pred             ECCCCccccChh--hc--CCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCC-h-----------------
Confidence            555555543322  21  22345555555555444421   45566777777777766531 1                 


Q ss_pred             cCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccC
Q 047927          612 SSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA  691 (1005)
Q Consensus       612 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~  691 (1005)
                           . ...++.|++|+++ |.+.+..  .+..+++|+.|++++|.+++.  ..+..++  +|++|++++|.+.+..+ 
T Consensus       151 -----~-~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~--~L~~L~l~~n~l~~~~~-  216 (466)
T 1o6v_A          151 -----A-LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLT--NLESLIATNNQISDITP-  216 (466)
T ss_dssp             -----G-GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCT--TCSEEECCSSCCCCCGG-
T ss_pred             -----h-hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCC--CCCEEEecCCccccccc-
Confidence                 1 1135566666665 3444332  377888888888888888743  3467776  88888888888887766 


Q ss_pred             ccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCC
Q 047927          692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP  771 (1005)
Q Consensus       692 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  771 (1005)
                       +..+++|++|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++.+..   . +..++
T Consensus       217 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~-~~~l~  287 (466)
T 1o6v_A          217 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS---P-LAGLT  287 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG---G-GTTCT
T ss_pred             -ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc---c-ccCCC
Confidence             66788899999999988864  467888999999999999987765  788899999999999888643   2 77889


Q ss_pred             CccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEEC
Q 047927          772 MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDF  851 (1005)
Q Consensus       772 ~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  851 (1005)
                      +|+.|++++|++.+..|.                                                   ..+++|+.|+|
T Consensus       288 ~L~~L~L~~n~l~~~~~~---------------------------------------------------~~l~~L~~L~L  316 (466)
T 1o6v_A          288 ALTNLELNENQLEDISPI---------------------------------------------------SNLKNLTYLTL  316 (466)
T ss_dssp             TCSEEECCSSCCSCCGGG---------------------------------------------------GGCTTCSEEEC
T ss_pred             ccCeEEcCCCcccCchhh---------------------------------------------------cCCCCCCEEEC
Confidence            999999999988764331                                                   14678899999


Q ss_pred             CCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927          852 SRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       852 s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  931 (1005)
                      ++|++++..|  ++.+++|+.|++++|++++.  ..++++++|+.|++++|++++.+|  +..+++|+.|++++|++++.
T Consensus       317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            9999998776  78999999999999999975  468999999999999999999888  89999999999999999983

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.1e-32  Score=316.01  Aligned_cols=347  Identities=25%  Similarity=0.316  Sum_probs=258.5

Q ss_pred             ccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccc
Q 047927          428 SSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLT  507 (1005)
Q Consensus       428 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~  507 (1005)
                      .++.++.|++.++.+.. +| .+..+++|++|++++|.+.+ ++.  +..+++|++|++++|.+..++.   ....+.|+
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP---LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCC
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh---hcCCCCCC
Confidence            35679999999999885 45 48889999999999999984 443  8888999999998888876654   33345566


Q ss_pred             eEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccC
Q 047927          508 TLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSN  587 (1005)
Q Consensus       508 ~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n  587 (1005)
                      +|++++|+++.++.+..+++|++|++++|.+.+                          ++   .+..+++|++|+++ |
T Consensus       116 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--------------------------~~---~~~~l~~L~~L~l~-~  165 (466)
T 1o6v_A          116 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--------------------------IS---ALSGLTSLQQLSFG-N  165 (466)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECC--------------------------CG---GGTTCTTCSEEEEE-E
T ss_pred             EEECCCCCCCCChHHcCCCCCCEEECCCCccCC--------------------------Ch---hhccCCcccEeecC-C
Confidence            666666666666556666666666666665553                          21   13445667777764 2


Q ss_pred             cccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchh
Q 047927          588 QIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCL  667 (1005)
Q Consensus       588 ~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~  667 (1005)
                      .+.+..                       . ...++.|++|++++|.+++.  ..+..+++|+.|++++|.+++..|  +
T Consensus       166 ~~~~~~-----------------------~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  217 (466)
T 1o6v_A          166 QVTDLK-----------------------P-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--L  217 (466)
T ss_dssp             SCCCCG-----------------------G-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             cccCch-----------------------h-hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--c
Confidence            222110                       0 11355666666666666543  347778888888888888876555  5


Q ss_pred             hhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCC
Q 047927          668 INMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRL  747 (1005)
Q Consensus       668 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  747 (1005)
                      ..++  +|+.|++++|++++.  ..+..+++|++|++++|.+++..|  +..+++|+.|++++|++++..+  +..+++|
T Consensus       218 ~~l~--~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  289 (466)
T 1o6v_A          218 GILT--NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL  289 (466)
T ss_dssp             GGCT--TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             cccC--CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence            5566  788888888888765  357778888888888888886654  7888888888888888887655  7788888


Q ss_pred             cEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheeccccccccccc
Q 047927          748 HVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDA  827 (1005)
Q Consensus       748 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (1005)
                      +.|++++|++.+..    .+..+++|+.|++++|++++..|.                                      
T Consensus       290 ~~L~L~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~~~~--------------------------------------  327 (466)
T 1o6v_A          290 TNLELNENQLEDIS----PISNLKNLTYLTLYFNNISDISPV--------------------------------------  327 (466)
T ss_dssp             SEEECCSSCCSCCG----GGGGCTTCSEEECCSSCCSCCGGG--------------------------------------
T ss_pred             CeEEcCCCcccCch----hhcCCCCCCEEECcCCcCCCchhh--------------------------------------
Confidence            88888888887643    267788899999999988875541                                      


Q ss_pred             EEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCccc
Q 047927          828 ITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT  907 (1005)
Q Consensus       828 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~  907 (1005)
                                   ..++.|+.|++++|++++.  ..++++++|+.|++++|++++.+|  ++.+++|+.|++++|++++.
T Consensus       328 -------------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          328 -------------SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             -------------GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             -------------ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence                         1367789999999999875  468999999999999999998877  89999999999999999973

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=319.96  Aligned_cols=321  Identities=19%  Similarity=0.180  Sum_probs=274.5

Q ss_pred             cEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccc
Q 047927          580 SVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYL  659 (1005)
Q Consensus       580 ~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  659 (1005)
                      +.++.+++.++......+.+++.|++++|++++..|..+. .++.|++|++++|.+++..|..|.++++|++|+|++|++
T Consensus        14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            3555555555533333455677777777777655554444 588999999999999999999999999999999999999


Q ss_pred             cccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcch
Q 047927          660 SGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPC  739 (1005)
Q Consensus       660 ~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  739 (1005)
                      ++..+..+..++  +|++|+|++|++.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+.
T Consensus        93 ~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           93 KLIPLGVFTGLS--NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CSCCTTSSTTCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             CccCcccccCCC--CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            976666788888  999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             hhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheeccc
Q 047927          740 WVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNL  819 (1005)
Q Consensus       740 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  819 (1005)
                      +|.++++|+.|++++|++.+..  +..+..+++|+.|++++|++.+.+|...+                           
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------------------------  221 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNCL---------------------------  221 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCCEECTTTT---------------------------
T ss_pred             HhcccCCCcEEeCCCCcCcEeC--hhhcccCcccceeeCCCCccccccCcccc---------------------------
Confidence            9999999999999999998765  67888999999999999999887775432                           


Q ss_pred             ccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeC
Q 047927          820 SQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDL  899 (1005)
Q Consensus       820 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdL  899 (1005)
                                            ...+|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..+.++++|+.|+|
T Consensus       222 ----------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (477)
T 2id5_A          222 ----------------------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL  279 (477)
T ss_dssp             ----------------------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEEC
T ss_pred             ----------------------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEEC
Confidence                                  1246899999999999665578999999999999999999988889999999999999


Q ss_pred             CCCcCcccCcccccCCCCCCeEEccCCcccccCCCC-CcccccccccccCCCCCCC
Q 047927          900 SMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTS-TQLQSFLATSFEGNDRLWG  954 (1005)
Q Consensus       900 s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc~  954 (1005)
                      ++|++++..|..|.++++|++||+++|+|++..|.. ..+..+....+.+|+--|.
T Consensus       280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             CCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            999999999999999999999999999999855432 2334455566778876664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2.1e-31  Score=317.15  Aligned_cols=337  Identities=20%  Similarity=0.207  Sum_probs=215.7

Q ss_pred             CcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEE
Q 047927          452 ELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHL  531 (1005)
Q Consensus       452 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L  531 (1005)
                      .+++++.+++++|.+. .+|...+..+++|++|++++|.+..++...                       +..+++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-----------------------~~~l~~L~~L  104 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYA-----------------------FAYAHTIQKL  104 (597)
T ss_dssp             GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTT-----------------------TTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHH-----------------------hcCCCCCCEE
Confidence            3567888888888876 677777888888888888888777655332                       5566777777


Q ss_pred             ECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCc
Q 047927          532 DLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT  611 (1005)
Q Consensus       532 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~  611 (1005)
                      ++++|.+++..|..+                           ..+++|++|++++|.+++                    
T Consensus       105 ~L~~n~l~~~~~~~~---------------------------~~l~~L~~L~L~~n~l~~--------------------  137 (597)
T 3oja_B          105 YMGFNAIRYLPPHVF---------------------------QNVPLLTVLVLERNDLSS--------------------  137 (597)
T ss_dssp             ECCSSCCCCCCTTTT---------------------------TTCTTCCEEECCSSCCCC--------------------
T ss_pred             ECCCCcCCCCCHHHH---------------------------cCCCCCCEEEeeCCCCCC--------------------
Confidence            777777775444332                           334566666666666552                    


Q ss_pred             cCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccC
Q 047927          612 SSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA  691 (1005)
Q Consensus       612 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~  691 (1005)
                        +|..++..++.|++|++++|.+++..|..|..+++|+.|++++|.+++..   +..++  +|+.|++++|.+++.   
T Consensus       138 --l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~--~L~~L~l~~n~l~~l---  207 (597)
T 3oja_B          138 --LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIP--SLFHANVSYNLLSTL---  207 (597)
T ss_dssp             --CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCT--TCSEEECCSSCCSEE---
T ss_pred             --CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhh--hhhhhhcccCccccc---
Confidence              11222223444555555555555555555666666666666666655431   22233  455555555555432   


Q ss_pred             ccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCC
Q 047927          692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP  771 (1005)
Q Consensus       692 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  771 (1005)
                        ...++|++|++++|.+...                        .+..   .++|+.|+|++|.+++    +..+..++
T Consensus       208 --~~~~~L~~L~ls~n~l~~~------------------------~~~~---~~~L~~L~L~~n~l~~----~~~l~~l~  254 (597)
T 3oja_B          208 --AIPIAVEELDASHNSINVV------------------------RGPV---NVELTILKLQHNNLTD----TAWLLNYP  254 (597)
T ss_dssp             --ECCTTCSEEECCSSCCCEE------------------------ECSC---CSCCCEEECCSSCCCC----CGGGGGCT
T ss_pred             --cCCchhheeeccCCccccc------------------------cccc---CCCCCEEECCCCCCCC----ChhhccCC
Confidence              1223455555555554432                        2211   1344455555554443    23444555


Q ss_pred             CccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEEC
Q 047927          772 MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDF  851 (1005)
Q Consensus       772 ~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  851 (1005)
                      +|+.|++++|.+.+..|..+                                                 ..+++|+.|+|
T Consensus       255 ~L~~L~Ls~N~l~~~~~~~~-------------------------------------------------~~l~~L~~L~L  285 (597)
T 3oja_B          255 GLVEVDLSYNELEKIMYHPF-------------------------------------------------VKMQRLERLYI  285 (597)
T ss_dssp             TCSEEECCSSCCCEEESGGG-------------------------------------------------TTCSSCCEEEC
T ss_pred             CCCEEECCCCccCCCCHHHh-------------------------------------------------cCccCCCEEEC
Confidence            55555555555555444322                                                 13556777777


Q ss_pred             CCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927          852 SRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       852 s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  931 (1005)
                      ++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|||++|++++..   +..++.|++|++++|+++|.
T Consensus       286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            7777776 5777788999999999999999 68989999999999999999998653   67788999999999999997


Q ss_pred             CCCCCcccccccccccCCCCCCCCCC
Q 047927          932 IPTSTQLQSFLATSFEGNDRLWGPPL  957 (1005)
Q Consensus       932 ip~~~~~~~~~~~~~~gn~~lc~~~~  957 (1005)
                      .+. ..+..+....+.+++..|+.+.
T Consensus       361 ~~~-~~~~~~~~~~~~~~~~~C~~~~  385 (597)
T 3oja_B          361 SLR-ALFRNVARPAVDDADQHCKIDY  385 (597)
T ss_dssp             HHH-HHTTTCCTTTBCCCCCCCCTTC
T ss_pred             hHH-HHHHHHhhhccccccccCCcch
Confidence            543 2355666777889999998753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=7.5e-31  Score=296.02  Aligned_cols=336  Identities=21%  Similarity=0.209  Sum_probs=208.4

Q ss_pred             CcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEE
Q 047927          452 ELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHL  531 (1005)
Q Consensus       452 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L  531 (1005)
                      .+++++.|++++|.+. .+|...+..+++|++|++++|.+..++...                       +..+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----------------------~~~l~~L~~L   98 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYA-----------------------FAYAHTIQKL   98 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTT-----------------------TTTCTTCCEE
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhh-----------------------ccCCCCcCEE
Confidence            4578888888888876 677777888888888888888877665433                       4555666777


Q ss_pred             ECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCc
Q 047927          532 DLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT  611 (1005)
Q Consensus       532 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~  611 (1005)
                      ++++|.+.+..|..+                           ..+++|++|++++|.++.                    
T Consensus        99 ~L~~n~l~~~~~~~~---------------------------~~l~~L~~L~L~~n~l~~--------------------  131 (390)
T 3o6n_A           99 YMGFNAIRYLPPHVF---------------------------QNVPLLTVLVLERNDLSS--------------------  131 (390)
T ss_dssp             ECCSSCCCCCCTTTT---------------------------TTCTTCCEEECCSSCCCC--------------------
T ss_pred             ECCCCCCCcCCHHHh---------------------------cCCCCCCEEECCCCccCc--------------------
Confidence            777776664443322                           223445555555554431                    


Q ss_pred             cCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccC
Q 047927          612 SSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA  691 (1005)
Q Consensus       612 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~  691 (1005)
                        +|..++..++.|++|++++|.+++..|..+..+++|+.|++++|++++. +  +..++  +|+.|++++|.+++.   
T Consensus       132 --l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~--~L~~L~l~~n~l~~~---  201 (390)
T 3o6n_A          132 --LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIP--SLFHANVSYNLLSTL---  201 (390)
T ss_dssp             --CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCT--TCSEEECCSSCCSEE---
T ss_pred             --CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--ccccc--ccceeeccccccccc---
Confidence              1112222234444444444444444455566666666666666666543 1  33333  566666666665542   


Q ss_pred             ccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCC
Q 047927          692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP  771 (1005)
Q Consensus       692 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  771 (1005)
                        ...++|++|++++|.+... |..  ..++|+.|++++|.+++.  .++..+++|++|++++|++.+..  |..+..  
T Consensus       202 --~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~--  270 (390)
T 3o6n_A          202 --AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM--YHPFVK--  270 (390)
T ss_dssp             --ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE--SGGGTT--
T ss_pred             --CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC--hhHccc--
Confidence              1223566666666665543 221  234556666666655542  34555555555555555444332  222222  


Q ss_pred             CccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEEC
Q 047927          772 MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDF  851 (1005)
Q Consensus       772 ~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  851 (1005)
                                                                                             +++|+.|+|
T Consensus       271 -----------------------------------------------------------------------l~~L~~L~L  279 (390)
T 3o6n_A          271 -----------------------------------------------------------------------MQRLERLYI  279 (390)
T ss_dssp             -----------------------------------------------------------------------CSSCCEEEC
T ss_pred             -----------------------------------------------------------------------cccCCEEEC
Confidence                                                                                   445666666


Q ss_pred             CCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927          852 SRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       852 s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  931 (1005)
                      ++|++++ +|..++.+++|++|+|++|+++ .+|..++.+++|+.|+|++|++++. |  +..+++|++|++++|+++|.
T Consensus       280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence            6666664 4666678899999999999999 6788899999999999999999865 3  77889999999999999986


Q ss_pred             CCCCCcccccccccccCCCCCCCCC
Q 047927          932 IPTSTQLQSFLATSFEGNDRLWGPP  956 (1005)
Q Consensus       932 ip~~~~~~~~~~~~~~gn~~lc~~~  956 (1005)
                      ... ..+..+....+.+++..|+.+
T Consensus       355 ~~~-~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          355 SLR-ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             HHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred             hHH-HHHHHHHhhcccccCceeccc
Confidence            432 224445556677777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.8e-30  Score=285.59  Aligned_cols=219  Identities=25%  Similarity=0.316  Sum_probs=143.9

Q ss_pred             hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCC
Q 047927          643 ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV  722 (1005)
Q Consensus       643 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  722 (1005)
                      +..+++|+.|++++|.....++ .+..++  +|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++
T Consensus       128 ~~~l~~L~~L~l~~n~~~~~~~-~~~~l~--~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~  200 (347)
T 4fmz_A          128 LANLTKMYSLNLGANHNLSDLS-PLSNMT--GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTS  200 (347)
T ss_dssp             GTTCTTCCEEECTTCTTCCCCG-GGTTCT--TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTT
T ss_pred             hccCCceeEEECCCCCCccccc-chhhCC--CCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCc
Confidence            4445555555555554432222 244444  55556665555554433  5555666666666666654322  556666


Q ss_pred             CCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhcc
Q 047927          723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE  802 (1005)
Q Consensus       723 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~  802 (1005)
                      |+.|++++|.+++..+  +..+++|++|++++|++++..   . +..+++|+.|++++|.+++. +.             
T Consensus       201 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~l~~n~l~~~-~~-------------  260 (347)
T 4fmz_A          201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS---P-LANLSQLTWLEIGTNQISDI-NA-------------  260 (347)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCC-GG-------------
T ss_pred             cceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc---c-hhcCCCCCEEECCCCccCCC-hh-------------
Confidence            6666666666665444  566666666666666665432   1 55666677777777766542 10             


Q ss_pred             CCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcc
Q 047927          803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG  882 (1005)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  882 (1005)
                                                           +..+++|+.|++++|++++.  +.++.+++|+.|+|++|++++
T Consensus       261 -------------------------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          261 -------------------------------------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             -------------------------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG
T ss_pred             -------------------------------------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC
Confidence                                                 01356778888888888764  357888999999999999998


Q ss_pred             cCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccc
Q 047927          883 SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV  929 (1005)
Q Consensus       883 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  929 (1005)
                      ..|..++.+++|+.|++++|++++..|  +..+++|++||+++|+++
T Consensus       302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            888889999999999999999998777  888999999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=7.4e-30  Score=287.91  Aligned_cols=349  Identities=18%  Similarity=0.153  Sum_probs=176.8

Q ss_pred             ccCCCCCCCCcc-cceeEECCCCCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCCCCCCCc-ccCCCCCcEE
Q 047927           33 MVQWSQSNDCCT-WSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTL  110 (1005)
Q Consensus        33 ~~~w~~~~~~c~-w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~lp~~-l~~l~~L~~L  110 (1005)
                      +++|..+.+||. |.++.|..    +.+.+.........  ...-..++++++|+++++.+..  +|.. +..+++|++|
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~----~~~~i~~~~~~~~~--~~~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L   74 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVF----YDVHIDMQTQDVYF--GFEDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELL   74 (390)
T ss_dssp             ----CCEECBCC------EEE----ESCEECSSCCCCEE--SCSSGGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEE
T ss_pred             cCCCCCccceehhhhhhccce----eeeeeecccccccc--cccccccCCceEEEecCCchhh--CChhHhcccccCcEE
Confidence            567988778875 44444421    11111111111101  1122356778888888877643  5654 5677888888


Q ss_pred             EcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCC
Q 047927          111 NLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPK  190 (1005)
Q Consensus       111 ~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~  190 (1005)
                      ++++|.+.+..|..++++++|++|++++|.++..                                              
T Consensus        75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------------------------------------  108 (390)
T 3o6n_A           75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL----------------------------------------------  108 (390)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC----------------------------------------------
T ss_pred             ECCCCcccccChhhccCCCCcCEEECCCCCCCcC----------------------------------------------
Confidence            8888877655555677777777777776654433                                              


Q ss_pred             ccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCC
Q 047927          191 LQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSY  270 (1005)
Q Consensus       191 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  270 (1005)
                                    .|..++++++|++|++++|.+....+..|.++++|++|++++|.+++..|..+..+++|++|++++
T Consensus       109 --------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  174 (390)
T 3o6n_A          109 --------------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS  174 (390)
T ss_dssp             --------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS
T ss_pred             --------------CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC
Confidence                          233334444444444444444332222234444444444444444443344444444444444444


Q ss_pred             CCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCC
Q 047927          271 NELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP  350 (1005)
Q Consensus       271 n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  350 (1005)
                      |.+...   .+..+++|+.|++++|.+++.     ...++|++|++++|.+... |.  ...++|+.|++++|.+.+. +
T Consensus       175 n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~  242 (390)
T 3o6n_A          175 NRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-A  242 (390)
T ss_dssp             SCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-G
T ss_pred             CcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-H
Confidence            443222   122234444444444443321     2223455555555544432 11  1134566666666665542 3


Q ss_pred             cccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccc
Q 047927          351 SLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSS  430 (1005)
Q Consensus       351 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  430 (1005)
                      .+..+++|++|++++|.+++..+.. +..+++|++|++++|.++ .++..+..+++|++|++++|++.+....+  ..++
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~l~  318 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQ--PQFD  318 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGH--HHHT
T ss_pred             HHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceecCccc--cccC
Confidence            4444556666666666655444433 666666777777776666 34455556666666666666665332222  2345


Q ss_pred             cCCEEeCCCCccCCCCCccccCcCCCcEEECCCCccee
Q 047927          431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVG  468 (1005)
Q Consensus       431 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  468 (1005)
                      +|++|++++|.++.. +  +..+++|+.|++++|++.+
T Consensus       319 ~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          319 RLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             TCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             cCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence            566666666666543 2  4556677777777777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=4.1e-31  Score=288.97  Aligned_cols=278  Identities=21%  Similarity=0.296  Sum_probs=188.3

Q ss_pred             CCcHHHHHHHHHHhhhCCCCCCCcccccCC----CCCCCCcccceeEECC---------CCCEEEEEcCCCCcccccCCC
Q 047927            7 QCQSDQQSLLLQMKSRLTFDSSVSFRMVQW----SQSNDCCTWSGVDCDE---------AGRVIGLDLSEESISAGIDNS   73 (1005)
Q Consensus         7 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~---------~~~v~~L~L~~~~l~~~~~~~   73 (1005)
                      ++..+|++||++||+++..|+.  ++.++|    ....++|.|.|+.|+.         ..+|+.|+|+++.+. .+  +
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~--~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l--p   97 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRN--RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF--P   97 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCT--THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC--C
T ss_pred             ccCchHHHHHHHHHHhccCCch--hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc--C
Confidence            4566899999999999966664  478899    3467899999999952         278999999999887 44  6


Q ss_pred             cccccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCccccc-CccccCCCC
Q 047927           74 SSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVR-APLKLENPN  152 (1005)
Q Consensus        74 ~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~-~~~~~~~~~  152 (1005)
                      ..+.++++|++|+|++|.+.  .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+.. .|..     
T Consensus        98 ~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~-----  169 (328)
T 4fcg_A           98 DQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP-----  169 (328)
T ss_dssp             SCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSC-----
T ss_pred             hhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChh-----
Confidence            77888999999999999887  48888999999999999999887 888888889999999988865322 1110     


Q ss_pred             hhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchh
Q 047927          153 LSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEF  232 (1005)
Q Consensus       153 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~  232 (1005)
                                                            +...         ..+..+.++++|++|++++|.+. .+|..
T Consensus       170 --------------------------------------~~~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~  201 (328)
T 4fcg_A          170 --------------------------------------LAST---------DASGEHQGLVNLQSLRLEWTGIR-SLPAS  201 (328)
T ss_dssp             --------------------------------------SEEE---------C-CCCEEESTTCCEEEEEEECCC-CCCGG
T ss_pred             --------------------------------------Hhhc---------cchhhhccCCCCCEEECcCCCcC-cchHh
Confidence                                                  0000         00112333455555555555443 44444


Q ss_pred             ccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCC
Q 047927          233 LADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLS  312 (1005)
Q Consensus       233 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  312 (1005)
                      ++++++|++|++++|.+++ +|..++.+++|++|++++|.+.......+..+++|++|++++|.+.+.+|..+.++++|+
T Consensus       202 l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE  280 (328)
T ss_dssp             GGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred             hcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence            5555555555555555552 334455555555555555544333333344455555555555555667777777788888


Q ss_pred             EEeecCCccCCCCCccCCCCCCCcEEECcCCcCc
Q 047927          313 RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS  346 (1005)
Q Consensus       313 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  346 (1005)
                      +|++++|.+.+.+|..++++++|+.+++..+.+.
T Consensus       281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             EEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             EEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            8888888777778877888888888777765443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.3e-28  Score=273.32  Aligned_cols=307  Identities=24%  Similarity=0.330  Sum_probs=142.5

Q ss_pred             cccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhh
Q 047927           76 LFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSG  155 (1005)
Q Consensus        76 l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~  155 (1005)
                      +..+++|++|+++++.+..  +| .+..+++|++|++++|.+. .+|. +.++++|++|++++|.++..+          
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~~~----------  104 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDIS----------  104 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCG----------
T ss_pred             chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccCch----------
Confidence            3455556666666555532  33 2555666666666666554 2333 555666666666665543321          


Q ss_pred             hhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccC
Q 047927          156 LLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLAD  235 (1005)
Q Consensus       156 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~  235 (1005)
                      .+.++++|++|+++++.+.....     +.. +++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..
T Consensus       105 ~~~~l~~L~~L~l~~n~i~~~~~-----~~~-l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~  175 (347)
T 4fmz_A          105 ALQNLTNLRELYLNEDNISDISP-----LAN-LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IAN  175 (347)
T ss_dssp             GGTTCTTCSEEECTTSCCCCCGG-----GTT-CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred             HHcCCCcCCEEECcCCcccCchh-----hcc-CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hcc
Confidence            13334444444444433332211     111 1444444454443332222 24555555555555555443322  445


Q ss_pred             CCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEe
Q 047927          236 FSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVE  315 (1005)
Q Consensus       236 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  315 (1005)
                      +++|++|++++|.+++..+  +..+++|++|++++|.+..  .+.+..+++|++|++++|.+++..+  +..+++|++|+
T Consensus       176 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  249 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE  249 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC--CchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence            5555555555555543221  4455555555555554322  1224444445555555544443322  44444555555


Q ss_pred             ecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCC
Q 047927          316 FYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGG  395 (1005)
Q Consensus       316 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  395 (1005)
                      +++|.+.+.  ..+..+++|++|++++|.+.+. +.                         +..+++|++|++++|.+++
T Consensus       250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~-------------------------~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SV-------------------------LNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GG-------------------------GGGCTTCSEEECCSSCCCG
T ss_pred             CCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hh-------------------------hcCCCCCCEEECcCCcCCC
Confidence            554444432  2344444444444444444432 22                         4445555555555555554


Q ss_pred             ccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccC
Q 047927          396 SIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE  443 (1005)
Q Consensus       396 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~  443 (1005)
                      ..+..+..+++|++|++++|++++..+   ...+++|++|++++|.++
T Consensus       302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          302 EDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred             cChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence            444445555555555555555544333   223455555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=7.4e-29  Score=295.25  Aligned_cols=347  Identities=18%  Similarity=0.166  Sum_probs=179.2

Q ss_pred             cccCCCCCCCCcc----cceeEECCCCCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCCCCCCCc-ccCCCC
Q 047927           32 RMVQWSQSNDCCT----WSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTN  106 (1005)
Q Consensus        32 ~~~~w~~~~~~c~----w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~lp~~-l~~l~~  106 (1005)
                      .+++|..+.+||.    |.++.|+.     .++........    ...-..++++++|+++++.+..  +|.. +..+++
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~-----~i~~~~~~~~~----~~~~l~l~~l~~l~l~~~~l~~--lp~~~~~~l~~   76 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDV-----HIDMQTQDVYF----GFEDITLNNQKIVTFKNSTMRK--LPAALLDSFRQ   76 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSC-----EECSSCCCCEE----SCSSGGGCCCSEEEESSCEESE--ECTHHHHHCCC
T ss_pred             cccCCCCCCcCcccCcCceeEecCc-----eeccccccccc----CcccccCCCceEEEeeCCCCCC--cCHHHHccCCC
Confidence            5778988778874    77766642     12222211111    1112246778888888887754  5543 567888


Q ss_pred             CcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhc
Q 047927          107 LTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSS  186 (1005)
Q Consensus       107 L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  186 (1005)
                      |++|++++|.+.+..|..++.+++|++|++++|.++..                                          
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------------------------  114 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL------------------------------------------  114 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC------------------------------------------
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC------------------------------------------
Confidence            88888888887766666777777777777776654433                                          


Q ss_pred             cCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEE
Q 047927          187 LVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETL  266 (1005)
Q Consensus       187 l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  266 (1005)
                                        .|..|+++++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..++.+++|++|
T Consensus       115 ------------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  176 (597)
T 3oja_B          115 ------------------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  176 (597)
T ss_dssp             ------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             ------------------CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence                              33334444444444444444443333334444444444444444444444444444444444


Q ss_pred             eCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCc
Q 047927          267 DLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS  346 (1005)
Q Consensus       267 ~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  346 (1005)
                      ++++|.+...   .+..+++|+.|++++|.+++.     ...++|+.|++++|.+....+. +  .++|+.|++++|.++
T Consensus       177 ~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~  245 (597)
T 3oja_B          177 QLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLT  245 (597)
T ss_dssp             ECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCC
T ss_pred             ECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCC
Confidence            4444443222   122234444444444443321     2233455555555544322111 1  135556666666555


Q ss_pred             cCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccc
Q 047927          347 GPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISN  426 (1005)
Q Consensus       347 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  426 (1005)
                      +. +.+..+++|++|++++|.+++.++.. +..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+....+  
T Consensus       246 ~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~--  320 (597)
T 3oja_B          246 DT-AWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQ--  320 (597)
T ss_dssp             CC-GGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGH--
T ss_pred             CC-hhhccCCCCCEEECCCCccCCCCHHH-hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCccc--
Confidence            42 33444445555555555555444443 5566666666666666653 4444555566666666666555322221  


Q ss_pred             cccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCccee
Q 047927          427 ASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVG  468 (1005)
Q Consensus       427 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  468 (1005)
                      ..+++|+.|++++|.+++. +  +..+++|+.|++++|++.+
T Consensus       321 ~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          321 PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred             ccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence            2345555666666655533 1  4455566666666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.5e-29  Score=275.50  Aligned_cols=288  Identities=17%  Similarity=0.205  Sum_probs=175.4

Q ss_pred             cccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCc
Q 047927          578 SLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN  657 (1005)
Q Consensus       578 ~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N  657 (1005)
                      +++.++++++.++......+.+++.|++++|.+++..|..+. .++.|++|++++|.+++..|..+..+++|++|++++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            466666666665532222334455555555555433333332 3566777777777777666777777777777777777


Q ss_pred             cccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec--ccCcccccCCCCCCEEECCCCcCCC
Q 047927          658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE--GMVPKSLANCSVLEILDLGNNQFDD  735 (1005)
Q Consensus       658 ~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~  735 (1005)
                      +++ .+|..+.  +  +|++|++++|++++..+..|..+++|++|++++|.++  +..|..+..+ +|+.|++++|++++
T Consensus       113 ~l~-~l~~~~~--~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          113 HLV-EIPPNLP--S--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CCC-SCCSSCC--T--TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             cCC-ccCcccc--c--cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            776 4454443  2  6777777777777666666777777777777777774  3556666666 67777777777765


Q ss_pred             CcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhhe
Q 047927          736 TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYR  815 (1005)
Q Consensus       736 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~  815 (1005)
                       +|..+.  ++|++|++++|++.+..  +..+..+++|+.|++++|++++..|..+                        
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~------------------------  237 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIENGSL------------------------  237 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCTTGG------------------------
T ss_pred             -cCcccc--CCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCChhHh------------------------
Confidence             343332  56677777777766544  4566666677777777776665444211                        


Q ss_pred             ecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcC----
Q 047927          816 FLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNL----  891 (1005)
Q Consensus       816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l----  891 (1005)
                                               ..++.|+.|+|++|+++ .+|..++.+++|++|+|++|++++..+..+...    
T Consensus       238 -------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~  291 (332)
T 2ft3_A          238 -------------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV  291 (332)
T ss_dssp             -------------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred             -------------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence                                     12455666777777666 566666666677777777777665555555432    


Q ss_pred             --CCCCEEeCCCCcCc--ccCcccccCCCCCCeEEccCCc
Q 047927          892 --REIESLDLSMNNLS--GTIPAQLASLNFLSVLNLSYNH  927 (1005)
Q Consensus       892 --~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N~  927 (1005)
                        .+|+.|++++|.+.  +..|..|..++.|+.+++++|+
T Consensus       292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence              45666677776665  5556666666666667666663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=8e-29  Score=272.49  Aligned_cols=248  Identities=20%  Similarity=0.232  Sum_probs=174.5

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL  702 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  702 (1005)
                      +.+++|++++|.+++..+..|.++++|++|++++|++++..|..+..++  +|++|++++|+++.. |..+.  ++|++|
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~l-~~~~~--~~L~~L  126 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLKEL-PEKMP--KTLQEL  126 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEECCSSCCSBC-CSSCC--TTCCEE
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC--CCCEEECCCCcCCcc-Chhhc--ccccEE
Confidence            3455666666666666556677777777777777777766677777766  777777777777643 33332  577777


Q ss_pred             eCCCCeecccCcccccCCCCCCEEECCCCcCCC--CcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccC
Q 047927          703 DLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD--TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS  780 (1005)
Q Consensus       703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~  780 (1005)
                      ++++|++++..+..|..+++|+.|++++|+++.  ..+..+..+++|++|++++|++...   |..+.  ++|+.|++++
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l---~~~~~--~~L~~L~l~~  201 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQGLP--PSLTELHLDG  201 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC---CSSCC--TTCSEEECTT
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC---Ccccc--ccCCEEECCC
Confidence            777777777766777777777777777777753  5667777777777777777777642   43332  6777888888


Q ss_pred             CcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccC
Q 047927          781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPI  860 (1005)
Q Consensus       781 N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i  860 (1005)
                      |++++..|..+                                                 ..+++|+.|+|++|++++..
T Consensus       202 n~l~~~~~~~~-------------------------------------------------~~l~~L~~L~Ls~n~l~~~~  232 (330)
T 1xku_A          202 NKITKVDAASL-------------------------------------------------KGLNNLAKLGLSFNSISAVD  232 (330)
T ss_dssp             SCCCEECTGGG-------------------------------------------------TTCTTCCEEECCSSCCCEEC
T ss_pred             CcCCccCHHHh-------------------------------------------------cCCCCCCEEECCCCcCceeC
Confidence            87776544322                                                 13566777888888887777


Q ss_pred             cccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCC------CCCCeEEccCCcccc
Q 047927          861 PEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL------NFLSVLNLSYNHLVG  930 (1005)
Q Consensus       861 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l------~~L~~L~ls~N~l~g  930 (1005)
                      |..++.+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|...      ..++.+++++|++..
T Consensus       233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            777777888888888888887 677777788888888888888887766666433      667778888887753

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=2.7e-32  Score=316.04  Aligned_cols=245  Identities=19%  Similarity=0.120  Sum_probs=148.1

Q ss_pred             ChhhhccCCCCeEEccCccccccCCchhhh-----cCcccccEEECCCCcCCcc----ccCccCCCCCccEEeCCCCeec
Q 047927          640 PESICNATNLLVLDLSYNYLSGMIPTCLIN-----MSDSQLGVLNLRRNNLNGT----VSATFPANCSLRTLDLNGNQLE  710 (1005)
Q Consensus       640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~  710 (1005)
                      +..+..+++|+.|++++|.+++..+..+..     .+  +|++|++++|.+++.    ++..+..+++|++|++++|+++
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~--~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC--QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCC--CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCC--CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence            344555666667777666665443333322     22  566777777766653    3445556667777777777666


Q ss_pred             ccC-----cccccCCCCCCEEECCCCcCCCC----cchhhhcCCCCcEEecCCCcCCcccC--CCCCC-CCCCCccEEEc
Q 047927          711 GMV-----PKSLANCSVLEILDLGNNQFDDT----FPCWVKNASRLHVLILRSNNFFGNIS--CPRYN-VSWPMLQIIDL  778 (1005)
Q Consensus       711 ~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~-~~l~~L~~L~l  778 (1005)
                      +..     +..+..+++|++|++++|++++.    ++..+..+++|++|++++|++.+...  ....+ ...++|+.|++
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  320 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  320 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence            432     22233567777777777777654    45666667777777777776643210  00111 12357777777


Q ss_pred             cCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeec
Q 047927          779 ASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG  858 (1005)
Q Consensus       779 s~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g  858 (1005)
                      ++|.+++.....+.                                             ..+..++.|+.|||++|++++
T Consensus       321 ~~n~l~~~~~~~l~---------------------------------------------~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          321 KSCSFTAACCSHFS---------------------------------------------SVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             TTSCCBGGGHHHHH---------------------------------------------HHHHHCSSCCEEECCSSBCHH
T ss_pred             CCCCCchHHHHHHH---------------------------------------------HHHhhCCCccEEEccCCcccc
Confidence            77777654221111                                             111245677888888888876


Q ss_pred             cCcccccC-----CCCCCEEECCCCcCcc----cCchhhhcCCCCCEEeCCCCcCcccCccccc-----CCCCCCeEEcc
Q 047927          859 PIPEEMGL-----LQSLCALNLSHNALTG----SIPSLIGNLREIESLDLSMNNLSGTIPAQLA-----SLNFLSVLNLS  924 (1005)
Q Consensus       859 ~ip~~~~~-----l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~-----~l~~L~~L~ls  924 (1005)
                      ..+..+..     .++|++|+|++|++++    .+|..+..+++|++|||++|++++.-...+.     ....|+.|++.
T Consensus       356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~  435 (461)
T 1z7x_W          356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY  435 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeec
Confidence            65554442     5688888888888886    7788888888888888888888765222221     23356666666


Q ss_pred             CCccccc
Q 047927          925 YNHLVGR  931 (1005)
Q Consensus       925 ~N~l~g~  931 (1005)
                      ++.+...
T Consensus       436 ~~~~~~~  442 (461)
T 1z7x_W          436 DIYWSEE  442 (461)
T ss_dssp             TCCCCHH
T ss_pred             ccccCHH
Confidence            6665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=8.6e-28  Score=264.23  Aligned_cols=290  Identities=15%  Similarity=0.162  Sum_probs=209.9

Q ss_pred             CcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccC
Q 047927          577 TSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSY  656 (1005)
Q Consensus       577 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~  656 (1005)
                      .+++.++++++.++......++.++.|++++|++++..+..+. .++.|++|++++|.+++..|..+..+++|++|++++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            4688888888887754334566788888888887765444443 467788888888888877778888888888888888


Q ss_pred             ccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecc--cCcccccCCCCCCEEECCCCcCC
Q 047927          657 NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEG--MVPKSLANCSVLEILDLGNNQFD  734 (1005)
Q Consensus       657 N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~  734 (1005)
                      |+++ .+|..+.  +  +|++|++++|++++..+..|..+++|++|++++|.+..  ..+..+..+++|++|++++|+++
T Consensus       110 n~l~-~l~~~~~--~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          110 NQLK-ELPEKMP--K--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             SCCS-BCCSSCC--T--TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CcCC-ccChhhc--c--cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            8877 4555443  3  78888888888887777777888888888888888753  66777888888888888888887


Q ss_pred             CCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhh
Q 047927          735 DTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQY  814 (1005)
Q Consensus       735 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~  814 (1005)
                      . +|..+.  ++|++|++++|++.+..  |..+..+++|+.|++++|++++..|..+                       
T Consensus       185 ~-l~~~~~--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----------------------  236 (330)
T 1xku_A          185 T-IPQGLP--PSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSL-----------------------  236 (330)
T ss_dssp             S-CCSSCC--TTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTG-----------------------
T ss_pred             c-CCcccc--ccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhc-----------------------
Confidence            5 444332  67888888888877654  6677778888888888888776544221                       


Q ss_pred             eecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhc----
Q 047927          815 RFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGN----  890 (1005)
Q Consensus       815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~----  890 (1005)
                                                ..++.|+.|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..    
T Consensus       237 --------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~  289 (330)
T 1xku_A          237 --------------------------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  289 (330)
T ss_dssp             --------------------------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             --------------------------cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence                                      13566788888888887 67777888888888888888888665555543    


Q ss_pred             --CCCCCEEeCCCCcCcc--cCcccccCCCCCCeEEccCCc
Q 047927          891 --LREIESLDLSMNNLSG--TIPAQLASLNFLSVLNLSYNH  927 (1005)
Q Consensus       891 --l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~  927 (1005)
                        ...++.|++++|.+..  ..|..+..+..++.+++++|+
T Consensus       290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence              3677788888888753  556777778888888888774

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=3.8e-31  Score=306.35  Aligned_cols=240  Identities=21%  Similarity=0.183  Sum_probs=192.2

Q ss_pred             cCCCCeEEccCccccccC----CchhhhcCcccccEEECCCCcCCccccCccC-----CCCCccEEeCCCCeeccc----
Q 047927          646 ATNLLVLDLSYNYLSGMI----PTCLINMSDSQLGVLNLRRNNLNGTVSATFP-----ANCSLRTLDLNGNQLEGM----  712 (1005)
Q Consensus       646 l~~L~~L~Ls~N~l~~~~----p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~----  712 (1005)
                      .++|++|++++|++++..    +..+..++  +|++|++++|.+++..+..+.     ..++|++|++++|.+++.    
T Consensus       141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~--~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  218 (461)
T 1z7x_W          141 QCRLEKLQLEYCSLSAASCEPLASVLRAKP--DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD  218 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCT--TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             CCcceEEECCCCCCCHHHHHHHHHHHhhCC--CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence            567999999999998643    55666667  899999999999876554443     356999999999999974    


Q ss_pred             CcccccCCCCCCEEECCCCcCCCCc-----chhhhcCCCCcEEecCCCcCCccc--CCCCCCCCCCCccEEEccCCcccc
Q 047927          713 VPKSLANCSVLEILDLGNNQFDDTF-----PCWVKNASRLHVLILRSNNFFGNI--SCPRYNVSWPMLQIIDLASNKFSG  785 (1005)
Q Consensus       713 ~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~ls~N~~~~  785 (1005)
                      ++..+..+++|++|++++|++++..     +..+..+++|++|++++|++++.-  ..+..+..+++|+.||+++|++.+
T Consensus       219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD  298 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence            5778889999999999999988643     334446899999999999987631  014556668999999999999875


Q ss_pred             cCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeecc----Cc
Q 047927          786 RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGP----IP  861 (1005)
Q Consensus       786 ~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~----ip  861 (1005)
                      ..+..+...+                                            ....+.|+.|+|++|.+++.    +|
T Consensus       299 ~~~~~l~~~l--------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          299 EGARLLCETL--------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             HHHHHHHHHH--------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             HHHHHHHHHh--------------------------------------------ccCCccceeeEcCCCCCchHHHHHHH
Confidence            4333221100                                            01235799999999999976    67


Q ss_pred             ccccCCCCCCEEECCCCcCcccCchhhhc-----CCCCCEEeCCCCcCcc----cCcccccCCCCCCeEEccCCccccc
Q 047927          862 EEMGLLQSLCALNLSHNALTGSIPSLIGN-----LREIESLDLSMNNLSG----TIPAQLASLNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       862 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~-----l~~L~~LdLs~N~l~~----~ip~~l~~l~~L~~L~ls~N~l~g~  931 (1005)
                      ..+..+++|++|||++|++++..+..+..     .++|+.|+|++|++++    .+|..+..+++|++||+++|++++.
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            77888999999999999999877776664     6799999999999997    8999999999999999999999865

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.5e-28  Score=265.92  Aligned_cols=266  Identities=17%  Similarity=0.257  Sum_probs=191.3

Q ss_pred             CcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEE
Q 047927          599 NAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVL  678 (1005)
Q Consensus       599 ~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L  678 (1005)
                      .++.++++++.++ .+|..+   .+.+++|++++|.+++..|..|.++++|++|++++|++++..|..+..++  +|++|
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L  107 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR--KLQKL  107 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT--TCCEE
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC--CCCEE
Confidence            5677888887776 566554   35677788888888777777788888888888888888777777777776  78888


Q ss_pred             ECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCC--CCcchhhhcCCCCcEEecCCCc
Q 047927          679 NLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD--DTFPCWVKNASRLHVLILRSNN  756 (1005)
Q Consensus       679 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~  756 (1005)
                      ++++|+++...+. +.  ++|++|++++|++++..+..|..+++|+.|++++|+++  +..|..+..+ +|++|++++|+
T Consensus       108 ~L~~n~l~~l~~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~  183 (332)
T 2ft3_A          108 YISKNHLVEIPPN-LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK  183 (332)
T ss_dssp             ECCSSCCCSCCSS-CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred             ECCCCcCCccCcc-cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence            8888887744333 32  57888888888887766667777888888888888775  3666777777 77888888887


Q ss_pred             CCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchH
Q 047927          757 FFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLE  836 (1005)
Q Consensus       757 l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (1005)
                      +++.   |..+.  ++|+.|++++|++++..|..+                                             
T Consensus       184 l~~l---~~~~~--~~L~~L~l~~n~i~~~~~~~l---------------------------------------------  213 (332)
T 2ft3_A          184 LTGI---PKDLP--ETLNELHLDHNKIQAIELEDL---------------------------------------------  213 (332)
T ss_dssp             CSSC---CSSSC--SSCSCCBCCSSCCCCCCTTSS---------------------------------------------
T ss_pred             CCcc---Ccccc--CCCCEEECCCCcCCccCHHHh---------------------------------------------
Confidence            7652   44333  677777777777776544221                                             


Q ss_pred             HHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCC-
Q 047927          837 MKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL-  915 (1005)
Q Consensus       837 ~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-  915 (1005)
                          ..+++|+.|+|++|++++..|..++.+++|++|+|++|+++ .+|..++.+++|+.||+++|++++..+..|... 
T Consensus       214 ----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  288 (332)
T 2ft3_A          214 ----LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG  288 (332)
T ss_dssp             ----TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred             ----cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence                13456777777888777777777777777888888888777 677777777778888888887777666666543 


Q ss_pred             -----CCCCeEEccCCccc
Q 047927          916 -----NFLSVLNLSYNHLV  929 (1005)
Q Consensus       916 -----~~L~~L~ls~N~l~  929 (1005)
                           ..|+.+++++|++.
T Consensus       289 ~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          289 FGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCSSSCCBSEEECCSSSSC
T ss_pred             cccccccccceEeecCccc
Confidence                 45777777777776

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2e-28  Score=271.95  Aligned_cols=258  Identities=18%  Similarity=0.203  Sum_probs=215.6

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL  702 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  702 (1005)
                      +.+++|++++|.+++..+..+..+++|++|++++|++++..|..+..++  +|++|++++|++++..+..|..+++|++|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  129 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG--SLEHLDLSYNYLSNLSSSWFKPLSSLTFL  129 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC--CCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence            4677888888888877777888899999999999999887788888887  89999999999988777778889999999


Q ss_pred             eCCCCeecccCc-ccccCCCCCCEEECCCC-cCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccC
Q 047927          703 DLNGNQLEGMVP-KSLANCSVLEILDLGNN-QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS  780 (1005)
Q Consensus       703 ~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~  780 (1005)
                      ++++|++++..+ ..+..+++|++|++++| .+++..|..|+++++|++|++++|++.+..  |..+..+++|+.|++++
T Consensus       130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE--PKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC--TTTTTTCSEEEEEEEEC
T ss_pred             ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC--HHHHhccccCCeecCCC
Confidence            999999986544 47889999999999998 577777788999999999999999998766  78888999999999999


Q ss_pred             CcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccC
Q 047927          781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPI  860 (1005)
Q Consensus       781 N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i  860 (1005)
                      |++. .+|..+                                                ...+++|+.|++++|++++..
T Consensus       208 n~l~-~~~~~~------------------------------------------------~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          208 KQHI-LLLEIF------------------------------------------------VDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             SCST-THHHHH------------------------------------------------HHHTTTEEEEEEESCBCTTCC
T ss_pred             Cccc-cchhhh------------------------------------------------hhhcccccEEECCCCcccccc
Confidence            9874 333222                                                124678999999999999876


Q ss_pred             ccccc---CCCCCCEEECCCCcCcc----cCchhhhcCCCCCEEeCCCCcCcccCccc-ccCCCCCCeEEccCCcccccC
Q 047927          861 PEEMG---LLQSLCALNLSHNALTG----SIPSLIGNLREIESLDLSMNNLSGTIPAQ-LASLNFLSVLNLSYNHLVGRI  932 (1005)
Q Consensus       861 p~~~~---~l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~i  932 (1005)
                      +..+.   ....++.++|++|.+++    .+|+.++++++|+.|||++|+++ .+|.. |.++++|++|++++|+++|.+
T Consensus       239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            65543   46778999999999987    58999999999999999999999 55655 699999999999999999988


Q ss_pred             CC
Q 047927          933 PT  934 (1005)
Q Consensus       933 p~  934 (1005)
                      |.
T Consensus       318 ~~  319 (353)
T 2z80_A          318 PR  319 (353)
T ss_dssp             HH
T ss_pred             CC
Confidence            74

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.8e-27  Score=258.77  Aligned_cols=233  Identities=23%  Similarity=0.243  Sum_probs=160.7

Q ss_pred             CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCcc--ccCccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927          647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT--VSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE  724 (1005)
Q Consensus       647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  724 (1005)
                      ++|++|++++|+++...+..+..++  +|++|++++|+++..  .+..+..+++|++|++++|.+++ +|..+..+++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLT--QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE  104 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCC
T ss_pred             CCCCEEECCCCccCccCHhHhhccc--cCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCC
Confidence            3555555555555533333344554  556666666555532  23344455566666666666663 445566666666


Q ss_pred             EEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccc-cCChHHHhhhhhhhhcc
Q 047927          725 ILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG-RLPQKWLLNLEAMMVDE  802 (1005)
Q Consensus       725 ~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~-~~p~~~~~~l~~~~~~~  802 (1005)
                      +|++++|++++..+ ..+..+++|++|++++|++.+..  +..+..+++|+.|++++|.+.+ .+|..+           
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------  171 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIF-----------  171 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS--TTTTTTCTTCCEEECTTCEEGGGEECSCC-----------
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccc--hhhcccCcCCCEEECCCCccccccchhHH-----------
Confidence            66666666665444 45666666666666666665544  5556666667777777776654 233211           


Q ss_pred             CCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcc
Q 047927          803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG  882 (1005)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  882 (1005)
                                                            ..+++|+.|+|++|++++..|..++.+++|++|+|++|++++
T Consensus       172 --------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          172 --------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             --------------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred             --------------------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence                                                  135677888888888888888899999999999999999998


Q ss_pred             cCchhhhcCCCCCEEeCCCCcCcccCcccccCCC-CCCeEEccCCcccccCC
Q 047927          883 SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN-FLSVLNLSYNHLVGRIP  933 (1005)
Q Consensus       883 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip  933 (1005)
                      ..+..+..+++|+.|||++|++++.+|..+..++ +|++|++++|+++|.++
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            8787899999999999999999999999999984 89999999999998754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=3.2e-29  Score=272.69  Aligned_cols=252  Identities=20%  Similarity=0.204  Sum_probs=196.0

Q ss_pred             cCceEEEEecCCcccccCChhhhccCCCCeEEccCccc-cccCCchhh-------hcCcccccEEECCCCcCCccccCcc
Q 047927          622 MSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYL-SGMIPTCLI-------NMSDSQLGVLNLRRNNLNGTVSATF  693 (1005)
Q Consensus       622 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~~~L~~L~L~~n~l~~~~~~~~  693 (1005)
                      ...++++++++|.+  .+|..+...  |+.|++++|++ ...+|..+.       .++  +|++|++++|++++..|..+
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS--GLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS--CCCEEEEEEEBCBSCCCCCS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC--CccEEEccCCcccchhHHHH
Confidence            34455666666666  556655554  77778888877 345565554       455  78888888888887777765


Q ss_pred             --CCCCCccEEeCCCCeecccCcccccCC-----CCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC
Q 047927          694 --PANCSLRTLDLNGNQLEGMVPKSLANC-----SVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY  766 (1005)
Q Consensus       694 --~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  766 (1005)
                        ..+++|++|+|++|++++. |..+..+     ++|++|++++|++++..|..|+.+++|++|++++|++.+.+..+..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              7788888888888888876 7777766     8888888888888888888888888888888888888765322333


Q ss_pred             C--CCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcc
Q 047927          767 N--VSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILN  844 (1005)
Q Consensus       767 ~--~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  844 (1005)
                      +  ..+++|+.|++++|++++. |..                                             ....+..++
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~-~~~---------------------------------------------~~~~~~~l~  228 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETP-SGV---------------------------------------------CSALAAARV  228 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCH-HHH---------------------------------------------HHHHHHTTC
T ss_pred             HHhccCCCCCEEECCCCcCcch-HHH---------------------------------------------HHHHHhcCC
Confidence            3  7888999999999988731 100                                             011123467


Q ss_pred             cceEEECCCCeeeccCc-ccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927          845 IFTSIDFSRNNFEGPIP-EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL  923 (1005)
Q Consensus       845 ~l~~L~Ls~N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  923 (1005)
                      +|+.|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+.  ++|+.|||++|+|++. |. +..+++|++|++
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L  303 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL  303 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence            89999999999999886 56778999999999999999 8898887  8999999999999987 66 999999999999


Q ss_pred             cCCccccc
Q 047927          924 SYNHLVGR  931 (1005)
Q Consensus       924 s~N~l~g~  931 (1005)
                      ++|++++.
T Consensus       304 ~~N~l~~~  311 (312)
T 1wwl_A          304 KGNPFLDS  311 (312)
T ss_dssp             TTCTTTCC
T ss_pred             cCCCCCCC
Confidence            99999863

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.5e-27  Score=260.75  Aligned_cols=225  Identities=20%  Similarity=0.192  Sum_probs=167.3

Q ss_pred             CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEE
Q 047927          647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEIL  726 (1005)
Q Consensus       647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  726 (1005)
                      +.++.|++++|.++ .+|..+..++  +|++|++++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~--~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLS--HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGT--TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCC--CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            45566666666665 4555555555  5666666666666 55555666666666666666666 456666666666666


Q ss_pred             ECCCCcCCCCcchhhhc---------CCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhh
Q 047927          727 DLGNNQFDDTFPCWVKN---------ASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEA  797 (1005)
Q Consensus       727 ~Ls~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~  797 (1005)
                      ++++|++.+.+|..+..         +++|++|++++|+++ .+  |..+..+++|+.|++++|++++ +|..+      
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l--p~~l~~l~~L~~L~L~~N~l~~-l~~~l------  225 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL--PASIANLQNLKSLKIRNSPLSA-LGPAI------  225 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CC--CGGGGGCTTCCEEEEESSCCCC-CCGGG------
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cc--hHhhcCCCCCCEEEccCCCCCc-Cchhh------
Confidence            66666666666655543         777777777777776 33  6667777777777777777774 33221      


Q ss_pred             hhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCC
Q 047927          798 MMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSH  877 (1005)
Q Consensus       798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~  877 (1005)
                                                                 ..+++|+.|+|++|++.+.+|..++.+++|++|+|++
T Consensus       226 -------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          226 -------------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             -------------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             -------------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence                                                       1357788899999999999999999999999999999


Q ss_pred             CcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccc
Q 047927          878 NALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV  929 (1005)
Q Consensus       878 N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  929 (1005)
                      |++.+.+|..++++++|+.|||++|++.+.+|+.+++|++|+.+++..|.+.
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9999999999999999999999999999999999999999999999987664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=9.5e-27  Score=267.56  Aligned_cols=250  Identities=22%  Similarity=0.207  Sum_probs=188.6

Q ss_pred             EEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927          627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG  706 (1005)
Q Consensus       627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  706 (1005)
                      .++.++..++ .+|..+  .++++.|+|++|++++..|..|..++  +|++|+|++|++++..+..|.++++|++|+|++
T Consensus        58 ~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           58 KVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLH--HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCC--CCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            3444444444 234333  24677777777777766666677666  677777777777777677777777777777777


Q ss_pred             CeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccccc
Q 047927          707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR  786 (1005)
Q Consensus       707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~  786 (1005)
                      |++++..+..|..+++|++|++++|+++...+..|.++++|++|++++|...+.+. +..+..+++|+.|++++|++++.
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc
Confidence            77776666667777777777777777776666677777777777777754444331 33566777788888888877642


Q ss_pred             CChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccC
Q 047927          787 LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGL  866 (1005)
Q Consensus       787 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~  866 (1005)
                       |.                                                  +..+++|+.|+|++|++++..|..|.+
T Consensus       212 -~~--------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~  240 (452)
T 3zyi_A          212 -PN--------------------------------------------------LTPLVGLEELEMSGNHFPEIRPGSFHG  240 (452)
T ss_dssp             -CC--------------------------------------------------CTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred             -cc--------------------------------------------------ccccccccEEECcCCcCcccCcccccC
Confidence             31                                                  013567899999999999999999999


Q ss_pred             CCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCC
Q 047927          867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIP  933 (1005)
Q Consensus       867 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  933 (1005)
                      +++|+.|+|++|++++..|..+..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus       241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            9999999999999999999999999999999999999998888889999999999999999988754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.4e-27  Score=253.55  Aligned_cols=210  Identities=25%  Similarity=0.234  Sum_probs=130.5

Q ss_pred             cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCc-CCCCcchhhhcCCCCcEEec
Q 047927          674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ-FDDTFPCWVKNASRLHVLIL  752 (1005)
Q Consensus       674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L  752 (1005)
                      +|++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|+ ++...|..|..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            45555555555555544555555555555555555555555555555555555555554 44444555555555555555


Q ss_pred             CCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEE
Q 047927          753 RSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTI  832 (1005)
Q Consensus       753 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (1005)
                      ++|++.+..  |..+..+++|+.|++++|++++..+..+                                         
T Consensus       113 ~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------------------------------------  149 (285)
T 1ozn_A          113 DRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTF-----------------------------------------  149 (285)
T ss_dssp             TTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT-----------------------------------------
T ss_pred             CCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCHhHh-----------------------------------------
Confidence            555555433  4445555555555555555553322111                                         


Q ss_pred             cchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccc
Q 047927          833 KGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQL  912 (1005)
Q Consensus       833 ~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l  912 (1005)
                              ..+++|+.|+|++|++++..+..+..+++|++|+|++|++++..|..++++++|+.||+++|++++..|..+
T Consensus       150 --------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  221 (285)
T 1ozn_A          150 --------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL  221 (285)
T ss_dssp             --------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred             --------ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc
Confidence                    124556677777777776666667777888888888888887777778888888888888888887766777


Q ss_pred             cCCCCCCeEEccCCcccccCCC
Q 047927          913 ASLNFLSVLNLSYNHLVGRIPT  934 (1005)
Q Consensus       913 ~~l~~L~~L~ls~N~l~g~ip~  934 (1005)
                      ..+++|++|++++|+++|.++.
T Consensus       222 ~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          222 APLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             TTCTTCCEEECCSSCEECSGGG
T ss_pred             ccCcccCEEeccCCCccCCCCc
Confidence            7788888888888888776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=266.20  Aligned_cols=233  Identities=21%  Similarity=0.214  Sum_probs=172.6

Q ss_pred             CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEE
Q 047927          647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEIL  726 (1005)
Q Consensus       647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  726 (1005)
                      ++++.|+|++|++++..+..|..++  +|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLR--HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCS--SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCC--CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            4566666666666655556666665  66666666666666666666666666666666666665555566666666666


Q ss_pred             ECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCch
Q 047927          727 DLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ  806 (1005)
Q Consensus       727 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~  806 (1005)
                      ++++|+++...+..|.++++|++|++++|+..+.+. +..+..+++|+.|++++|+++. +|.                 
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~-~~~-----------------  202 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLRE-IPN-----------------  202 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSS-CCC-----------------
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCcc-ccc-----------------
Confidence            666666666666666666677777776644433331 3355667777777777777652 231                 


Q ss_pred             hhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCch
Q 047927          807 SELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPS  886 (1005)
Q Consensus       807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~  886 (1005)
                                                       +..+++|+.|||++|++++..|..|.++++|+.|+|++|++++..|.
T Consensus       203 ---------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  249 (440)
T 3zyj_A          203 ---------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN  249 (440)
T ss_dssp             ---------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             ---------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence                                             01356788999999999998899999999999999999999999999


Q ss_pred             hhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCC
Q 047927          887 LIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIP  933 (1005)
Q Consensus       887 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  933 (1005)
                      .|.++++|+.|||++|++++..+..+..+++|+.|+|++|++.|.+.
T Consensus       250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            99999999999999999998888889999999999999999988654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=6.2e-27  Score=254.49  Aligned_cols=259  Identities=22%  Similarity=0.215  Sum_probs=193.2

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccc--cCCchhhhcCcccccEEECCCCcCCccccCccCCCCCcc
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSG--MIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR  700 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  700 (1005)
                      +.+++|++++|.++...+..|..+++|++|++++|+++.  ..|..+..++  +|++|++++|.+.+ +|..+..+++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--~L~~L~Ls~n~i~~-l~~~~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT--SLKYLDLSFNGVIT-MSSNFLGLEQLE  104 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS--CCCEEECCSCSEEE-EEEEEETCTTCC
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc--ccCEEECCCCcccc-ChhhcCCCCCCC
Confidence            345556666666664444456777778888888887763  2355566665  78888888887774 444577778888


Q ss_pred             EEeCCCCeecccCc-ccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCc-ccCCCCCCCCCCCccEEEc
Q 047927          701 TLDLNGNQLEGMVP-KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFG-NISCPRYNVSWPMLQIIDL  778 (1005)
Q Consensus       701 ~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l  778 (1005)
                      +|++++|++++..+ ..+..+++|++|++++|++++..|..+..+++|++|++++|++.+ .+  |..+..+++|+.|++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDL  182 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEEC
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc--hhHHhhCcCCCEEEC
Confidence            88888888886654 577888888888888888887788888888888888888888775 33  677788888888888


Q ss_pred             cCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeec
Q 047927          779 ASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG  858 (1005)
Q Consensus       779 s~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g  858 (1005)
                      ++|++++..|..+                                                 ..+++|+.|+|++|++++
T Consensus       183 s~n~l~~~~~~~~-------------------------------------------------~~l~~L~~L~L~~N~l~~  213 (306)
T 2z66_A          183 SQCQLEQLSPTAF-------------------------------------------------NSLSSLQVLNMSHNNFFS  213 (306)
T ss_dssp             TTSCCCEECTTTT-------------------------------------------------TTCTTCCEEECTTSCCSB
T ss_pred             CCCCcCCcCHHHh-------------------------------------------------cCCCCCCEEECCCCccCc
Confidence            8888876555322                                                 135678889999999988


Q ss_pred             cCcccccCCCCCCEEECCCCcCcccCchhhhcC-CCCCEEeCCCCcCcccCc--ccccCCCCCCeEEccCCcccccCCCC
Q 047927          859 PIPEEMGLLQSLCALNLSHNALTGSIPSLIGNL-REIESLDLSMNNLSGTIP--AQLASLNFLSVLNLSYNHLVGRIPTS  935 (1005)
Q Consensus       859 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l-~~L~~LdLs~N~l~~~ip--~~l~~l~~L~~L~ls~N~l~g~ip~~  935 (1005)
                      ..+..++.+++|++|||++|++++.+|..+..+ ++|++|||++|.+++..+  .-...+...+.+.+..+++.|..|..
T Consensus       214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred             cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence            777788999999999999999999999989888 489999999999987643  11223344556677788888888864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=2.1e-29  Score=301.61  Aligned_cols=438  Identities=16%  Similarity=0.109  Sum_probs=289.2

Q ss_pred             CCCcccceeEECCCCCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCC--CCCCCccc------------CCC
Q 047927           40 NDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNA--TEIPSGLG------------NLT  105 (1005)
Q Consensus        40 ~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~--~~lp~~l~------------~l~  105 (1005)
                      .-|++|.++.+....   .+.+..+ .....  ...+.++++|++|+|+++....  ..+|..++            .++
T Consensus        39 ~vck~W~~~~~~~~~---~l~~~~~-~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  112 (592)
T 3ogk_B           39 LVCRRWFKIDSETRE---HVTMALC-YTATP--DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR  112 (592)
T ss_dssp             TSCHHHHHHHHHHCC---EEEESCG-GGSCH--HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HHhHHHHHhhhcccc---EEEEeec-cccCh--HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence            345689998643222   2333322 11111  3446688999999998753210  11333333            789


Q ss_pred             CCcEEEcccCCCcCCCcccccCC--CCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHH
Q 047927          106 NLTTLNLSNAGFAGQIPIQVSGM--TRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQA  183 (1005)
Q Consensus       106 ~L~~L~Ls~n~~~~~lp~~l~~l--~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  183 (1005)
                      +|++|+|++|.+.+..+..+++.  .+|++|++++|.-      .....+.....++++|++|+++++.+.+.+..|+..
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~------~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~  186 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG------FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE  186 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE------EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC------cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence            99999999998877767667663  4499999998751      111223445668999999999999988887777777


Q ss_pred             HhccCCCccEEEccCCCCCCC----CCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCC---ccCccc
Q 047927          184 LSSLVPKLQVLSLSGCFLSGP----VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLH---GAFPEK  256 (1005)
Q Consensus       184 l~~l~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~  256 (1005)
                      +...+++|++|++++|.+++.    ++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+...   ...+..
T Consensus       187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence            766669999999999988743    33345678999999999988765 6778888999999999864332   344556


Q ss_pred             cCCCCCCCEEeCCCCCCCCCCCCc-ccCCCCCcEEEcccccccccCc-hhhccCCCCCEEeecCCccCCCCCccCCCCCC
Q 047927          257 ILQLPTLETLDLSYNELLQGSLPD-FHQNLSLETLILSATNFSGILP-DSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQ  334 (1005)
Q Consensus       257 l~~l~~L~~L~Ls~n~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  334 (1005)
                      +..+++|+.|+++++.  ...++. +..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++
T Consensus       266 l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             hhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence            7788899999998753  344444 3458889999999988765433 44678899999998843322223333456788


Q ss_pred             CcEEECcC-----------CcCccC-CCc-ccccCcccEEECCCCcCcCCCCccccc-ccccccEEEcC----CCcCCCc
Q 047927          335 LVYLDMSF-----------NHFSGP-IPS-LHMFRNLAYLDLSYNIFTGGISSIGWE-QLLNLFHVDLS----HNNLGGS  396 (1005)
Q Consensus       335 L~~L~L~~-----------n~l~~~-~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~----~n~l~~~  396 (1005)
                      |++|++++           +.+++. +.. ...+++|++|+++.+.+++..... +. .+++|++|+++    .|.+++.
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~-l~~~~~~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES-IGTYLKNLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH-HHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH-HHhhCCCCcEEEEeecCCCccccCc
Confidence            99999883           344321 111 234668888888777776544443 33 37788888885    5556542


Q ss_pred             -----cCccCCCCCCCCEEeCcCcc--cccccccccccccccCCEEeCCCCccCCC-CCccccCcCCCcEEECCCCccee
Q 047927          397 -----IPQSLFELPMVQHLLLADNQ--FDGHVTEISNASSSLLDTLDLSDNNLEGP-IPLSFFELKNLKILLLSSNKFVG  468 (1005)
Q Consensus       397 -----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~  468 (1005)
                           ++..+..+++|++|+++.|.  +++.........+++|++|++++|.+++. ++..+..+++|++|++++|++++
T Consensus       423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  502 (592)
T 3ogk_B          423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE  502 (592)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred             hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence                 22335567788888886543  44433333334456777777777777653 23344567777777777777654


Q ss_pred             ccchhHHHhcCCCCeEeccCCeeeE
Q 047927          469 TIELDAIQRLRNLFRLDLSYNRLAV  493 (1005)
Q Consensus       469 ~~~~~~l~~l~~L~~L~l~~n~l~~  493 (1005)
                      .........+++|++|++++|+++.
T Consensus       503 ~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          503 RAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             HHHHHHHHhcCccCeeECcCCcCCH
Confidence            4334445667777777777777543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.8e-26  Score=247.83  Aligned_cols=253  Identities=20%  Similarity=0.202  Sum_probs=191.8

Q ss_pred             EEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCC
Q 047927          626 IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLN  705 (1005)
Q Consensus       626 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  705 (1005)
                      ..++.+++.++. +|..+  .++|+.|++++|.+++..+..+..++  +|++|++++|.+++..+..|..+++|++|+++
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   88 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACR--NLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCC--CCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence            345555655553 34332  45777888888887766666777776  78888888888877777777778888888888


Q ss_pred             CCe-ecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccc
Q 047927          706 GNQ-LEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS  784 (1005)
Q Consensus       706 ~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~  784 (1005)
                      +|+ +....|..|..+++|++|++++|++++..|..|.++++|++|++++|++.+..  +..+..+++|+.|++++|+++
T Consensus        89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A           89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC--HhHhccCCCccEEECCCCccc
Confidence            886 77666777888888888888888888777777888888888888888877543  455677888888888888877


Q ss_pred             ccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccc
Q 047927          785 GRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM  864 (1005)
Q Consensus       785 ~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~  864 (1005)
                      +..+..+                                                 ..++.|+.|++++|++++..|..+
T Consensus       167 ~~~~~~~-------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~  197 (285)
T 1ozn_A          167 SVPERAF-------------------------------------------------RGLHSLDRLLLHQNRVAHVHPHAF  197 (285)
T ss_dssp             EECTTTT-------------------------------------------------TTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ccCHHHh-------------------------------------------------cCccccCEEECCCCcccccCHhHc
Confidence            5333211                                                 135778899999999999999999


Q ss_pred             cCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCC
Q 047927          865 GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTS  935 (1005)
Q Consensus       865 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  935 (1005)
                      +.+++|+.|+|++|++++..|..+..+++|+.|++++|.+++..+.. .-...++.++.+.|.+.|..|..
T Consensus       198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            99999999999999999877788999999999999999998765532 11123455668889999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.3e-27  Score=260.63  Aligned_cols=250  Identities=20%  Similarity=0.152  Sum_probs=149.5

Q ss_pred             hhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCC
Q 047927          618 IGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANC  697 (1005)
Q Consensus       618 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~  697 (1005)
                      ++..++.+++|++++|.+++..|..+..+++|++|++++|++++..+  +..++  +|++|++++|++++..+     .+
T Consensus        29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~--~L~~L~Ls~n~l~~l~~-----~~   99 (317)
T 3o53_A           29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS--TLRTLDLNNNYVQELLV-----GP   99 (317)
T ss_dssp             HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT--TCCEEECCSSEEEEEEE-----CT
T ss_pred             HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC--CCCEEECcCCccccccC-----CC
Confidence            33345566666666666666666666666777777777776665443  55555  66666776666665432     25


Q ss_pred             CccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCC-CCCCCccEE
Q 047927          698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYN-VSWPMLQII  776 (1005)
Q Consensus       698 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~l~~L~~L  776 (1005)
                      +|++|++++|++++..+..   +++|++|++++|++++..|..++.+++|++|++++|++.+..  +..+ ..+++|+.|
T Consensus       100 ~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L  174 (317)
T 3o53_A          100 SIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHL  174 (317)
T ss_dssp             TCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEE
T ss_pred             CcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc--HHHHhhccCcCCEE
Confidence            6666666666666554433   455666666666666666666666666666666666665543  3333 245666666


Q ss_pred             EccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCee
Q 047927          777 DLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNF  856 (1005)
Q Consensus       777 ~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l  856 (1005)
                      ++++|++++..+.                                                   ..++.|+.|+|++|++
T Consensus       175 ~L~~N~l~~~~~~---------------------------------------------------~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          175 NLQYNFIYDVKGQ---------------------------------------------------VVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             ECTTSCCCEEECC---------------------------------------------------CCCTTCCEEECCSSCC
T ss_pred             ECCCCcCcccccc---------------------------------------------------cccccCCEEECCCCcC
Confidence            6666665532110                                                   0134566666666666


Q ss_pred             eccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCc-ccCcccccCCCCCCeEEcc-CCcccccCCC
Q 047927          857 EGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS-GTIPAQLASLNFLSVLNLS-YNHLVGRIPT  934 (1005)
Q Consensus       857 ~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls-~N~l~g~ip~  934 (1005)
                      ++. |..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus       204 ~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          204 AFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             CEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             Ccc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            643 333666666666666666666 35666666666666666666666 5566666666666666666 3345555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=9.3e-27  Score=258.52  Aligned_cols=238  Identities=18%  Similarity=0.234  Sum_probs=180.2

Q ss_pred             ccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCcccc-CccCCCCCc
Q 047927          621 FMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS-ATFPANCSL  699 (1005)
Q Consensus       621 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L  699 (1005)
                      .++.|++|++++|.+++..|..|..+++|++|++++|++++..+..+..++  +|++|++++|++++..+ ..|..+++|
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A           74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS--SLTFLNLLGNPYKTLGETSLFSHLTKL  151 (353)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT--TCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc--cCCEEECCCCCCcccCchhhhccCCCC
Confidence            466777777777777777777788888888888888888754444577776  78888888888886555 577788888


Q ss_pred             cEEeCCCC-eecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEc
Q 047927          700 RTLDLNGN-QLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDL  778 (1005)
Q Consensus       700 ~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l  778 (1005)
                      ++|++++| .+.+..+..|..+++|++|++++|++++..|.+++.+++|++|++++|++....  +.....+++|+.|++
T Consensus       152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L  229 (353)
T 2z80_A          152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVECLEL  229 (353)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTTTEEEEEE
T ss_pred             cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch--hhhhhhcccccEEEC
Confidence            88888888 466666777888888888888888888877888888888888888888875432  222334778888888


Q ss_pred             cCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeec
Q 047927          779 ASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG  858 (1005)
Q Consensus       779 s~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g  858 (1005)
                      ++|++++..+..+..                                              ......++.++|+++.+++
T Consensus       230 ~~n~l~~~~~~~l~~----------------------------------------------~~~~~~l~~l~L~~~~l~~  263 (353)
T 2z80_A          230 RDTDLDTFHFSELST----------------------------------------------GETNSLIKKFTFRNVKITD  263 (353)
T ss_dssp             ESCBCTTCCCC----------------------------------------------------CCCCCCEEEEESCBCCH
T ss_pred             CCCcccccccccccc----------------------------------------------ccccchhhccccccccccC
Confidence            888887654422110                                              0123456777888888776


Q ss_pred             ----cCcccccCCCCCCEEECCCCcCcccCchh-hhcCCCCCEEeCCCCcCcccCc
Q 047927          859 ----PIPEEMGLLQSLCALNLSHNALTGSIPSL-IGNLREIESLDLSMNNLSGTIP  909 (1005)
Q Consensus       859 ----~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~-~~~l~~L~~LdLs~N~l~~~ip  909 (1005)
                          .+|+.++.+++|++|||++|+++ .+|.. ++++++|++|+|++|.+++..|
T Consensus       264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          264 ESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence                47889999999999999999999 67776 4899999999999999998766

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.8e-25  Score=256.95  Aligned_cols=230  Identities=21%  Similarity=0.207  Sum_probs=204.1

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL  702 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  702 (1005)
                      +.+++|++++|.+++..|..|.++++|+.|+|++|++++..|..+.+++  +|++|+|++|++++..+..|..+++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA--SLNTLELFDNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc--cCCEEECCCCcCCccChhhhcccCCCCEE
Confidence            5678888888888888888999999999999999999988888999988  99999999999999888889999999999


Q ss_pred             eCCCCeecccCcccccCCCCCCEEECCCC-cCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCC
Q 047927          703 DLNGNQLEGMVPKSLANCSVLEILDLGNN-QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN  781 (1005)
Q Consensus       703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N  781 (1005)
                      +|++|++++..+..|..+++|+.|++++| .+....+..|.++++|++|+|++|++++.    ..+..+++|+.|++++|
T Consensus       153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM----PNLTPLVGLEELEMSGN  228 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC----CCCTTCTTCCEEECTTS
T ss_pred             ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc----ccccccccccEEECcCC
Confidence            99999999888889999999999999995 55544556799999999999999999863    35788999999999999


Q ss_pred             cccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCc
Q 047927          782 KFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIP  861 (1005)
Q Consensus       782 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip  861 (1005)
                      ++++..|..+                                                 ..+++|+.|+|++|++++..|
T Consensus       229 ~l~~~~~~~~-------------------------------------------------~~l~~L~~L~L~~n~l~~~~~  259 (452)
T 3zyi_A          229 HFPEIRPGSF-------------------------------------------------HGLSSLKKLWVMNSQVSLIER  259 (452)
T ss_dssp             CCSEECGGGG-------------------------------------------------TTCTTCCEEECTTSCCCEECT
T ss_pred             cCcccCcccc-------------------------------------------------cCccCCCEEEeCCCcCceECH
Confidence            9987666432                                                 146789999999999999999


Q ss_pred             ccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCccc
Q 047927          862 EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT  907 (1005)
Q Consensus       862 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~  907 (1005)
                      ..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus       260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            9999999999999999999988888889999999999999998643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3.2e-25  Score=253.91  Aligned_cols=229  Identities=22%  Similarity=0.228  Sum_probs=201.9

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL  702 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  702 (1005)
                      +.++.|++++|++++..+..|.++++|++|+|++|++++..+..|.+++  +|++|+|++|++++..+..|..+++|++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  141 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA--NLNTLELFDNRLTTIPNGAFVYLSKLKEL  141 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS--SCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc--cCCEEECCCCcCCeeCHhHhhccccCcee
Confidence            5677888888888888888999999999999999999988888898888  89999999999998888899999999999


Q ss_pred             eCCCCeecccCcccccCCCCCCEEECCCC-cCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCC
Q 047927          703 DLNGNQLEGMVPKSLANCSVLEILDLGNN-QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN  781 (1005)
Q Consensus       703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N  781 (1005)
                      +|++|++++..+..|..+++|++|++++| .+....+..|.++++|++|++++|+++..   | .+..+++|+.||+++|
T Consensus       142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---P-NLTPLIKLDELDLSGN  217 (440)
T ss_dssp             ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---C-CCTTCSSCCEEECTTS
T ss_pred             eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---c-ccCCCcccCEEECCCC
Confidence            99999999888889999999999999995 45544556799999999999999999742   3 4788999999999999


Q ss_pred             cccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCc
Q 047927          782 KFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIP  861 (1005)
Q Consensus       782 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip  861 (1005)
                      ++++..|..+                                                 ..+++|+.|+|++|++++..|
T Consensus       218 ~l~~~~~~~~-------------------------------------------------~~l~~L~~L~L~~n~l~~~~~  248 (440)
T 3zyj_A          218 HLSAIRPGSF-------------------------------------------------QGLMHLQKLWMIQSQIQVIER  248 (440)
T ss_dssp             CCCEECTTTT-------------------------------------------------TTCTTCCEEECTTCCCCEECT
T ss_pred             ccCccChhhh-------------------------------------------------ccCccCCEEECCCCceeEECh
Confidence            9987666432                                                 146789999999999999999


Q ss_pred             ccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcc
Q 047927          862 EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG  906 (1005)
Q Consensus       862 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~  906 (1005)
                      ..|.++++|+.|||++|++++..+..+..+++|+.|+|++|.+..
T Consensus       249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            999999999999999999998888888999999999999999864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=2e-27  Score=258.55  Aligned_cols=207  Identities=21%  Similarity=0.226  Sum_probs=114.1

Q ss_pred             ccCCCCeEEccCccccccCCchh--hhcCcccccEEECCCCcCCccccCccCCC-----CCccEEeCCCCeecccCcccc
Q 047927          645 NATNLLVLDLSYNYLSGMIPTCL--INMSDSQLGVLNLRRNNLNGTVSATFPAN-----CSLRTLDLNGNQLEGMVPKSL  717 (1005)
Q Consensus       645 ~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~l  717 (1005)
                      ++++|++|++++|++++.+|..+  ..++  +|++|++++|++++. |..+..+     ++|++|++++|++++..|..|
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGP--DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSC--CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCC--CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence            34445555555555444444443  3333  445555555554444 4434333     455555555555554444555


Q ss_pred             cCCCCCCEEECCCCcCCCC--cchhh--hcCCCCcEEecCCCcCCcccCCC-CCCCCCCCccEEEccCCcccccCChHHH
Q 047927          718 ANCSVLEILDLGNNQFDDT--FPCWV--KNASRLHVLILRSNNFFGNISCP-RYNVSWPMLQIIDLASNKFSGRLPQKWL  792 (1005)
Q Consensus       718 ~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~~~l~~L~~L~ls~N~~~~~~p~~~~  792 (1005)
                      ..+++|++|++++|++.+.  .|..+  +.+++|++|++++|++++....+ ..+..+++|+.||+++|++++..|...+
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  249 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC  249 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence            5555555555555554433  12222  44555555555555554211001 1122445555566666655554431110


Q ss_pred             hhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCE
Q 047927          793 LNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCA  872 (1005)
Q Consensus       793 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~  872 (1005)
                                                                      ..++.|+.|+|++|+++ .+|..+.  ++|++
T Consensus       250 ------------------------------------------------~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~  278 (312)
T 1wwl_A          250 ------------------------------------------------DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSV  278 (312)
T ss_dssp             ------------------------------------------------CCCTTCCEEECTTSCCS-SCCSSCC--SEEEE
T ss_pred             ------------------------------------------------hhcCCCCEEECCCCccC-hhhhhcc--CCceE
Confidence                                                            02456777788888877 6777766  78888


Q ss_pred             EECCCCcCcccCchhhhcCCCCCEEeCCCCcCccc
Q 047927          873 LNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT  907 (1005)
Q Consensus       873 L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~  907 (1005)
                      |||++|+|++. |. +..+++|+.|+|++|++++.
T Consensus       279 L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          279 LDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             EECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            88888888865 66 88888888999999888763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=7.3e-26  Score=246.74  Aligned_cols=243  Identities=22%  Similarity=0.175  Sum_probs=206.9

Q ss_pred             eEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeC
Q 047927          625 SIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDL  704 (1005)
Q Consensus       625 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  704 (1005)
                      ++..+++.+.+....+..+..+++|++|++++|++++..|..+..++  +|++|++++|++++..+  |..+++|++|++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT--TCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC--cCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            45566777777666666677788999999999999988888999998  99999999999998776  899999999999


Q ss_pred             CCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccc
Q 047927          705 NGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS  784 (1005)
Q Consensus       705 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~  784 (1005)
                      ++|++++..     ..++|++|++++|++++..+..   +++|++|++++|++++..  +..+..+++|+.|++++|+++
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCC
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCC
Confidence            999999643     3489999999999999876654   678999999999998865  667888999999999999998


Q ss_pred             ccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccc
Q 047927          785 GRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM  864 (1005)
Q Consensus       785 ~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~  864 (1005)
                      +..|..+.                                                ..++.|+.|+|++|++++. |. .
T Consensus       158 ~~~~~~~~------------------------------------------------~~l~~L~~L~L~~N~l~~~-~~-~  187 (317)
T 3o53_A          158 TVNFAELA------------------------------------------------ASSDTLEHLNLQYNFIYDV-KG-Q  187 (317)
T ss_dssp             EEEGGGGG------------------------------------------------GGTTTCCEEECTTSCCCEE-EC-C
T ss_pred             cccHHHHh------------------------------------------------hccCcCCEEECCCCcCccc-cc-c
Confidence            76554321                                                1357899999999999976 33 3


Q ss_pred             cCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccc-ccCC
Q 047927          865 GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV-GRIP  933 (1005)
Q Consensus       865 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~ip  933 (1005)
                      ..+++|++|+|++|++++ +|..+..+++|+.|||++|+++ .+|..+..+++|+.|++++|+++ +.+|
T Consensus       188 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~  255 (317)
T 3o53_A          188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR  255 (317)
T ss_dssp             CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred             cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence            459999999999999996 5566999999999999999999 57888999999999999999999 4444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=1.5e-27  Score=285.52  Aligned_cols=350  Identities=13%  Similarity=0.018  Sum_probs=199.1

Q ss_pred             CCCCCcEEEccCCCCCcc----CccccCCCCCCCEEeCCCCCCCCCCCCc----ccCCCCCcEEEcccccccccCchhhc
Q 047927          235 DFSNLTSLYLSSCGLHGA----FPEKILQLPTLETLDLSYNELLQGSLPD----FHQNLSLETLILSATNFSGILPDSIK  306 (1005)
Q Consensus       235 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~----~~~~~~L~~L~L~~n~l~~~~p~~l~  306 (1005)
                      .+++|++|++++|.+++.    ++..+..+++|++|++++|.+.......    +..+++|++|++++|.+.+ +|..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            455555555555554433    2222334555666666655543211111    2235666666666666654 456677


Q ss_pred             cCCCCCEEeecCCccC---CCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccc
Q 047927          307 NLKNLSRVEFYLCNFN---GPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNL  383 (1005)
Q Consensus       307 ~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L  383 (1005)
                      .+++|++|+++.+...   ...+..+..+++|+.|+++++...........+++|++|++++|.+++......+..+++|
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L  320 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL  320 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence            7777777777653322   2333456667777777777654333222333455777788777775543322224667778


Q ss_pred             cEEEcCCCcCCCccCccCCCCCCCCEEeCcC-----------cccccccccccccccccCCEEeCCCCccCCCCCccccC
Q 047927          384 FHVDLSHNNLGGSIPQSLFELPMVQHLLLAD-----------NQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFE  452 (1005)
Q Consensus       384 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  452 (1005)
                      ++|+++++...+.++.....+++|++|++.+           +.+++.........+++|++|+++.+.+++..+..+..
T Consensus       321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            8887773322222333335567788888773           34443222222334677888888777777665555554


Q ss_pred             -cCCCcEEECC----CCcceecc----chhHHHhcCCCCeEeccCCe--eeEecCCcccccCcccceEEcCCccCcC--C
Q 047927          453 -LKNLKILLLS----SNKFVGTI----ELDAIQRLRNLFRLDLSYNR--LAVVAGSSVYCFPPLLTTLSLASCKLSA--I  519 (1005)
Q Consensus       453 -l~~L~~L~L~----~n~l~~~~----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~L~~n~l~~--l  519 (1005)
                       +++|+.|+++    .|.+++..    -...+.++++|++|++++|.  ++......+....++|++|++++|+++.  +
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence             7788888885    45555320    11235667888888886543  3322222222335668888888887763  3


Q ss_pred             CC-CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEecc
Q 047927          520 PN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHS  586 (1005)
Q Consensus       520 ~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  586 (1005)
                      +. +..+++|++|++++|.+++.....+.. ..++|++|++++|+++......-...++.+....+..
T Consensus       481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVT-KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCCCBHHHHHHHHH-HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             HHHHhcCcccCeeeccCCCCcHHHHHHHHH-hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            43 567788888888888876443333322 3467888888888876543222233456665555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.3e-24  Score=253.11  Aligned_cols=262  Identities=27%  Similarity=0.272  Sum_probs=161.6

Q ss_pred             cccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecC
Q 047927          553 SFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSK  632 (1005)
Q Consensus       553 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~  632 (1005)
                      .++.|++++|.++.++....    ++|++|++++|.++ .+|..                         +++|++|++++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N~l~-~lp~~-------------------------l~~L~~L~Ls~   90 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLT-SLPAL-------------------------PPELRTLEVSG   90 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC----TTCSEEEECSCCCS-CCCCC-------------------------CTTCCEEEECS
T ss_pred             CCcEEEecCCCcCccChhhC----CCCcEEEecCCCCC-CCCCc-------------------------CCCCCEEEcCC
Confidence            36667777777766543221    56666677666665 23333                         34555555555


Q ss_pred             CcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeeccc
Q 047927          633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGM  712 (1005)
Q Consensus       633 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  712 (1005)
                      |++++ +|.   .+++|++|++++|++++ +|.   .+.  +|+.|++++|+++++ |..   +++|++|++++|++++ 
T Consensus        91 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~--~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~-  155 (622)
T 3g06_A           91 NQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPS--GLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLAS-  155 (622)
T ss_dssp             CCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCT--TCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSC-
T ss_pred             CcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCC--CcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCC-
Confidence            55553 333   45666666666666663 333   222  566666666666653 222   2566666777666664 


Q ss_pred             CcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHH
Q 047927          713 VPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWL  792 (1005)
Q Consensus       713 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~  792 (1005)
                      +|.   .+++|+.|++++|++++ +|   ..+++|+.|++++|++++.   |.   ..++|+.|++++|.++. +|.   
T Consensus       156 l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l---~~---~~~~L~~L~L~~N~l~~-l~~---  218 (622)
T 3g06_A          156 LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL---PT---LPSELYKLWAYNNRLTS-LPA---  218 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC---CC---CCTTCCEEECCSSCCSS-CCC---
T ss_pred             cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC---CC---ccchhhEEECcCCcccc-cCC---
Confidence            232   23566667777776665 33   3456667777777766542   22   23566777777776652 221   


Q ss_pred             hhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCE
Q 047927          793 LNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCA  872 (1005)
Q Consensus       793 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~  872 (1005)
                                                                       .+++|+.|+|++|++++ +|   ..+++|+.
T Consensus       219 -------------------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~  245 (622)
T 3g06_A          219 -------------------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKE  245 (622)
T ss_dssp             -------------------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred             -------------------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence                                                             12456777777777775 55   44577778


Q ss_pred             EECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCC
Q 047927          873 LNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPT  934 (1005)
Q Consensus       873 L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  934 (1005)
                      |+|++|+|+ .+|.   .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|+++|.+|.
T Consensus       246 L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          246 LMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             EECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             EECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            888888877 4665   5677778888888887 6677777888888888888888777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2e-26  Score=265.77  Aligned_cols=216  Identities=23%  Similarity=0.176  Sum_probs=134.1

Q ss_pred             CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927          648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD  727 (1005)
Q Consensus       648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  727 (1005)
                      +|+.|+|++|.+++..|..+..++  +|++|+|++|.+++..|  |..+++|++|+|++|.+++..+     .++|+.|+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCT--TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCC--CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            556666666666555555555555  56666666666655444  5556666666666666664322     25666666


Q ss_pred             CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927          728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS  807 (1005)
Q Consensus       728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~  807 (1005)
                      +++|.+++..+.   .+++|+.|++++|++++..  |..+..+++|+.|++++|.+++..|..+.               
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---------------  165 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAELA---------------  165 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCCEEEGGGGG---------------
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCCCcChHHHh---------------
Confidence            666666655443   2455666666666666544  44555666666666666666665543221               


Q ss_pred             hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh
Q 047927          808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL  887 (1005)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  887 (1005)
                                                       ..++.|+.|+|++|.+++..+  +..+++|+.|+|++|++++. |..
T Consensus       166 ---------------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~  209 (487)
T 3oja_A          166 ---------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPE  209 (487)
T ss_dssp             ---------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGG
T ss_pred             ---------------------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHh
Confidence                                             124566777777777776522  33477777777777777753 344


Q ss_pred             hhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccc
Q 047927          888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV  929 (1005)
Q Consensus       888 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~  929 (1005)
                      ++.+++|+.|||++|++++ +|..+..+++|+.|++++|+++
T Consensus       210 ~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            7777777777777777775 5666777777777777777777

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=3.5e-24  Score=251.49  Aligned_cols=268  Identities=25%  Similarity=0.285  Sum_probs=203.7

Q ss_pred             ceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCc
Q 047927          527 KLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS  606 (1005)
Q Consensus       527 ~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls  606 (1005)
                      .++.|++++|.++ .+|..+.    ..++.|++++|.++.++.     .+++|++|++++|.+++ +|..          
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~----~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~-lp~~----------   99 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTS-LPVL----------   99 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC----TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSC-CCCC----------
T ss_pred             CCcEEEecCCCcC-ccChhhC----CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCc-CCCC----------
Confidence            5899999999998 7777553    679999999999998765     46899999999999873 4433          


Q ss_pred             CCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCC
Q 047927          607 GNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLN  686 (1005)
Q Consensus       607 ~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~  686 (1005)
                                     +++|++|++++|.+++. |.   .+++|+.|++++|++++ +|..+   +  +|++|++++|+++
T Consensus       100 ---------------l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~l---~--~L~~L~Ls~N~l~  154 (622)
T 3g06_A          100 ---------------PPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVLP---P--GLQELSVSDNQLA  154 (622)
T ss_dssp             ---------------CTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCCC---T--TCCEEECCSSCCS
T ss_pred             ---------------CCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCCC---C--CCCEEECcCCcCC
Confidence                           34555666666666543 32   45677788888887774 45432   3  7888888888877


Q ss_pred             ccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC
Q 047927          687 GTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY  766 (1005)
Q Consensus       687 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  766 (1005)
                      +. |.   ...+|+.|++++|++++ +|   ..+++|+.|++++|++++ +|.   .+++|+.|++++|.++..   |. 
T Consensus       155 ~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l---~~-  218 (622)
T 3g06_A          155 SL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL---PA-  218 (622)
T ss_dssp             CC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC---CC-
T ss_pred             Cc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc---CC-
Confidence            54 22   23578888888888885 44   456788888888888876 333   246788888888888742   32 


Q ss_pred             CCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccc
Q 047927          767 NVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF  846 (1005)
Q Consensus       767 ~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  846 (1005)
                        .+++|+.|++++|++++ +|.                                                    .+++|
T Consensus       219 --~~~~L~~L~Ls~N~L~~-lp~----------------------------------------------------~l~~L  243 (622)
T 3g06_A          219 --LPSGLKELIVSGNRLTS-LPV----------------------------------------------------LPSEL  243 (622)
T ss_dssp             --CCTTCCEEECCSSCCSC-CCC----------------------------------------------------CCTTC
T ss_pred             --CCCCCCEEEccCCccCc-CCC----------------------------------------------------CCCcC
Confidence              24788899999998875 341                                                    24678


Q ss_pred             eEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCC
Q 047927          847 TSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN  916 (1005)
Q Consensus       847 ~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  916 (1005)
                      +.|+|++|+++ .+|.   .+++|+.|+|++|+|+ .+|..++++++|+.|+|++|.+++.+|..+..++
T Consensus       244 ~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          244 KELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            89999999998 5666   5789999999999999 7899999999999999999999999999887765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1.1e-24  Score=232.84  Aligned_cols=211  Identities=20%  Similarity=0.162  Sum_probs=138.2

Q ss_pred             cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecC
Q 047927          674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR  753 (1005)
Q Consensus       674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  753 (1005)
                      +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            45555555555555444455555555555555555555544555555555555555555555555555555555555555


Q ss_pred             CCcCCcccCCCCCCCCCCCccEEEccCCccccc-CChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEE
Q 047927          754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR-LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTI  832 (1005)
Q Consensus       754 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~-~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  832 (1005)
                      +|++.+..  +..+..+++|+.|++++|++.+. +|..+                                         
T Consensus       109 ~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~l~~~~-----------------------------------------  145 (276)
T 2z62_A          109 ETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYF-----------------------------------------  145 (276)
T ss_dssp             TSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCGGG-----------------------------------------
T ss_pred             CCCccccC--chhcccCCCCCEEECcCCccceecCchhh-----------------------------------------
Confidence            55555432  33455556666666666665542 34221                                         


Q ss_pred             cchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCC----EEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccC
Q 047927          833 KGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLC----ALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTI  908 (1005)
Q Consensus       833 ~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~----~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~i  908 (1005)
                              ..+++|+.|+|++|++++..+..+..++.|+    .|++++|++++..+.. ....+|+.|+|++|++++..
T Consensus       146 --------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~  216 (276)
T 2z62_A          146 --------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSVP  216 (276)
T ss_dssp             --------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS-SCSCCEEEEECCSSCCSCCC
T ss_pred             --------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc-cCCCcccEEECCCCceeecC
Confidence                    1356677788888888777777777666666    8999999999655544 44558999999999999887


Q ss_pred             cccccCCCCCCeEEccCCcccccCCCCC
Q 047927          909 PAQLASLNFLSVLNLSYNHLVGRIPTST  936 (1005)
Q Consensus       909 p~~l~~l~~L~~L~ls~N~l~g~ip~~~  936 (1005)
                      +..+.++++|++|++++|+++|.+|.-.
T Consensus       217 ~~~~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          217 DGIFDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             TTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             HhHhcccccccEEEccCCcccccCCchH
Confidence            7888999999999999999999988543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.3e-25  Score=256.93  Aligned_cols=236  Identities=20%  Similarity=0.155  Sum_probs=210.1

Q ss_pred             cCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccE
Q 047927          622 MSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT  701 (1005)
Q Consensus       622 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  701 (1005)
                      ++.+++|++++|.+++..|..|..+++|+.|+|++|.+++..|  +..++  +|++|+|++|.+++..+.     ++|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~--~L~~L~Ls~N~l~~l~~~-----~~L~~  103 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS--TLRTLDLNNNYVQELLVG-----PSIET  103 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT--TCCEEECCSSEEEEEEEC-----TTCCE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC--CCCEEEecCCcCCCCCCC-----CCcCE
Confidence            4589999999999999989999999999999999999997666  78887  999999999999976543     79999


Q ss_pred             EeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCC-CCCCccEEEccC
Q 047927          702 LDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNV-SWPMLQIIDLAS  780 (1005)
Q Consensus       702 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~ls~  780 (1005)
                      |++++|.+++..+.   .+++|+.|++++|.+++..|..++.+++|++|+|++|.+++.+  |..+. .+++|+.|++++
T Consensus       104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTT
T ss_pred             EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--hHHHhhhCCcccEEecCC
Confidence            99999999987665   4588999999999999999999999999999999999999876  66665 789999999999


Q ss_pred             CcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccC
Q 047927          781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPI  860 (1005)
Q Consensus       781 N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i  860 (1005)
                      |.+++..+..                                                   .++.|+.|+|++|++++.+
T Consensus       179 N~l~~~~~~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          179 NFIYDVKGQV---------------------------------------------------VFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             SCCCEEECCC---------------------------------------------------CCTTCCEEECCSSCCCEEC
T ss_pred             Cccccccccc---------------------------------------------------cCCCCCEEECCCCCCCCCC
Confidence            9998653210                                                   2578999999999999855


Q ss_pred             cccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCc-ccCcccccCCCCCCeEEcc
Q 047927          861 PEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS-GTIPAQLASLNFLSVLNLS  924 (1005)
Q Consensus       861 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls  924 (1005)
                      | .++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus       208 ~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          208 P-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             G-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             H-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            5 59999999999999999996 8888999999999999999998 7888999999999998887

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=2.8e-23  Score=221.83  Aligned_cols=213  Identities=22%  Similarity=0.239  Sum_probs=155.0

Q ss_pred             CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEE
Q 047927          647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEIL  726 (1005)
Q Consensus       647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  726 (1005)
                      ++|++|++++|++++..+..+..++  +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCT--TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHhHhcccc--CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            4577777777777765555666666  67777777777777666677777777777777777777766777777777777


Q ss_pred             ECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCch
Q 047927          727 DLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ  806 (1005)
Q Consensus       727 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~  806 (1005)
                      ++++|++++..+..++.+++|++|++++|++.+. ..|..+..+++|+.|++++|++++..+..+ ..+           
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l-----------  172 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVL-----------  172 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHH-----------
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccCCCCCEEECCCCCCCcCCHHHh-hhh-----------
Confidence            7777777776666677777777777777777642 126667777778888888887776443221 111           


Q ss_pred             hhhchhhheecccccccccccEEEEEcchHHHHHHhcccce-EEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCc
Q 047927          807 SELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFT-SIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIP  885 (1005)
Q Consensus       807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip  885 (1005)
                                                        ..++.+. .|++++|++++..|..+.. .+|+.|+|++|++++..+
T Consensus       173 ----------------------------------~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~  217 (276)
T 2z62_A          173 ----------------------------------HQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPD  217 (276)
T ss_dssp             ----------------------------------HTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCT
T ss_pred             ----------------------------------hhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCH
Confidence                                              1122233 7999999999776665554 489999999999997777


Q ss_pred             hhhhcCCCCCEEeCCCCcCcccCc
Q 047927          886 SLIGNLREIESLDLSMNNLSGTIP  909 (1005)
Q Consensus       886 ~~~~~l~~L~~LdLs~N~l~~~ip  909 (1005)
                      ..++++++|+.|+|++|.+++..|
T Consensus       218 ~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          218 GIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             TTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             hHhcccccccEEEccCCcccccCC
Confidence            778999999999999999997654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=7.7e-23  Score=217.30  Aligned_cols=207  Identities=25%  Similarity=0.229  Sum_probs=159.9

Q ss_pred             CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927          648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD  727 (1005)
Q Consensus       648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  727 (1005)
                      ..+.++++++.++ .+|..+.  .  ++++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~--~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--A--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--T--TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCC-ccCCCCC--C--CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            4667888888877 4665443  2  678888888888777777788888888888888888766666677788888888


Q ss_pred             CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927          728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS  807 (1005)
Q Consensus       728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~  807 (1005)
                      +++|++++..+..|..+++|++|++++|++++..  +..+..                                      
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~--------------------------------------  131 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP--PRVFDS--------------------------------------  131 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--TTTTTT--------------------------------------
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeC--HHHhCc--------------------------------------
Confidence            8888887766666777777777777777665432  222223                                      


Q ss_pred             hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh
Q 047927          808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL  887 (1005)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  887 (1005)
                                                         +++|+.|+|++|++++..+..|+.+++|++|+|++|++++..|..
T Consensus       132 -----------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  176 (270)
T 2o6q_A          132 -----------------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA  176 (270)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             -----------------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH
Confidence                                               445666666677666655666888999999999999999877778


Q ss_pred             hhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCC
Q 047927          888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPT  934 (1005)
Q Consensus       888 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  934 (1005)
                      +.++++|+.|+|++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            99999999999999999988888899999999999999999998764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=3.8e-27  Score=282.34  Aligned_cols=459  Identities=15%  Similarity=0.072  Sum_probs=228.9

Q ss_pred             CCCcccceeEECCCCCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCC-CC-CCC------------cccCCC
Q 047927           40 NDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNA-TE-IPS------------GLGNLT  105 (1005)
Q Consensus        40 ~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~-~~-lp~------------~l~~l~  105 (1005)
                      .-|++|.++..   ...+.+++..+.....   ...+.++++|++|+++++.... .. .|.            ....++
T Consensus        32 ~vck~W~~~~~---~~~~~l~~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~  105 (594)
T 2p1m_B           32 LVCKSWYEIER---WCRRKVFIGNCYAVSP---ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT  105 (594)
T ss_dssp             TSCHHHHHHHH---HHCCEEEESSTTSSCH---HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HHHHHHHHhhh---hhceEEeeccccccCH---HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence            34668998832   2344566655432211   2346678899999999864211 00 111            124578


Q ss_pred             CCcEEEcccCCCcCCCccccc-CCCCCcEEeCCCcc-cccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHH
Q 047927          106 NLTTLNLSNAGFAGQIPIQVS-GMTRLVTLDLSGMY-FVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQA  183 (1005)
Q Consensus       106 ~L~~L~Ls~n~~~~~lp~~l~-~l~~L~~L~ls~n~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  183 (1005)
                      +|++|++++|.+.+..+..+. .+++|++|++++|. ++.       ..+.....++++|++|+++++.+++.+..++..
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-------DGLAAIAATCRNLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-------HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-------HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence            899999998888766666665 68888888888873 221       112334557778888888877766655555554


Q ss_pred             HhccCCCccEEEccCCCCCCCCCcc----ccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCC-------CCcc
Q 047927          184 LSSLVPKLQVLSLSGCFLSGPVDPS----LSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG-------LHGA  252 (1005)
Q Consensus       184 l~~l~~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~-------l~~~  252 (1005)
                      +...+++|++|++++|. .......    ..++++|++|++++|...+.++..+..+++|++|++..+.       +. .
T Consensus       179 ~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~  256 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-G  256 (594)
T ss_dssp             SCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-H
T ss_pred             HhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-H
Confidence            44444677777777665 1111111    2345677777777663333355666666777777755442       22 2


Q ss_pred             CccccCCCCCCCEE-eCCCCCCCCCCCCcc-cCCCCCcEEEcccccccccC-chhhccCCCCCEEeecCCccCCC-CCcc
Q 047927          253 FPEKILQLPTLETL-DLSYNELLQGSLPDF-HQNLSLETLILSATNFSGIL-PDSIKNLKNLSRVEFYLCNFNGP-IPTS  328 (1005)
Q Consensus       253 ~p~~l~~l~~L~~L-~Ls~n~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~-~~~~  328 (1005)
                      ++..+.++++|+.| .+.+..  ...++.+ ..+++|++|++++|.+++.. +..+..+++|++|++++| +... ++..
T Consensus       257 l~~~l~~~~~L~~Ls~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l  333 (594)
T 2p1m_B          257 LSVALSGCKELRCLSGFWDAV--PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL  333 (594)
T ss_dssp             HHHHHHTCTTCCEEECCBTCC--GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred             HHHHHhcCCCcccccCCcccc--hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence            33355666667766 333221  1122222 13566666666666654332 222445666666666655 2211 1111


Q ss_pred             CCCCCCCcEEECcCC---------cCccC-CCcc-cccCcccEEECCCCcCcCCCCcccccccccccEEEcC--C----C
Q 047927          329 MSDLSQLVYLDMSFN---------HFSGP-IPSL-HMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLS--H----N  391 (1005)
Q Consensus       329 l~~l~~L~~L~L~~n---------~l~~~-~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~--~----n  391 (1005)
                      ...+++|++|++.++         .+++. +..+ ..+++|++|.+..+.+++.........+++|++|+++  +    +
T Consensus       334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~  413 (594)
T 2p1m_B          334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD  413 (594)
T ss_dssp             HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred             HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence            223556666666332         12110 0000 1134455554444444432222111234455555554  1    2


Q ss_pred             cCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccC-cCCCcEEECCCCcceecc
Q 047927          392 NLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFE-LKNLKILLLSSNKFVGTI  470 (1005)
Q Consensus       392 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~  470 (1005)
                      .++. .|..                  ..+. .....+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..
T Consensus       414 ~l~~-~~~~------------------~~~~-~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~  472 (594)
T 2p1m_B          414 YLTL-EPLD------------------IGFG-AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG  472 (594)
T ss_dssp             TTTC-CCTH------------------HHHH-HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred             cccC-Cchh------------------hHHH-HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence            2221 0000                  0000 0012234555555544 333333333333 556666666666654332


Q ss_pred             chhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcC--CCCC-CCCCceeEEECcCCc
Q 047927          471 ELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSA--IPNL-RKQTKLYHLDLSDNQ  537 (1005)
Q Consensus       471 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--l~~l-~~l~~L~~L~Ls~n~  537 (1005)
                      .......+++|++|++++|.++...........++|++|++++|+++.  +..+ ..++.|+...+..+.
T Consensus       473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            222224566666666666665322221122333456666666665531  1112 445677666665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=4.7e-25  Score=264.08  Aligned_cols=387  Identities=16%  Similarity=0.126  Sum_probs=197.0

Q ss_pred             ccccCCEEeCCCCccCCCCCcccc-CcCCCcEEECCCC-cceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcc
Q 047927          428 SSSLLDTLDLSDNNLEGPIPLSFF-ELKNLKILLLSSN-KFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL  505 (1005)
Q Consensus       428 ~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~  505 (1005)
                      .+++|++|++++|.+++..+..+. .+++|++|++++| .+...........+++|++|++++|.++......       
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~-------  175 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW-------  175 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG-------
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH-------
Confidence            345677777777766655555554 5777888888777 3332212233456777777777777765432211       


Q ss_pred             cceEEcCCccCcCCCC-CCCCCceeEEECcCCcCCCCCC-hhhhhh--cCCcccEEeCCCC-cccCCCCCCccccCCccc
Q 047927          506 LTTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQISGEIP-NWLWKI--GKDSFNHLNLSHN-LLVSLEQPYSISDLTSLS  580 (1005)
Q Consensus       506 L~~L~L~~n~l~~l~~-l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~--~~~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~  580 (1005)
                                   ++. ...+++|++|++++|. . .+. ..+...  ..++|++|++++| .+..+  +..+..+++|+
T Consensus       176 -------------l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l--~~~~~~~~~L~  238 (594)
T 2p1m_B          176 -------------LSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLKLNRAVPLEKL--ATLLQRAPQLE  238 (594)
T ss_dssp             -------------GGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEECCTTSCHHHH--HHHHHHCTTCS
T ss_pred             -------------HHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEecCCCCcHHHH--HHHHhcCCcce
Confidence                         111 2355677777777775 1 222 112111  1234444444444 11111  11123345555


Q ss_pred             EEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeE-EccCccc
Q 047927          581 VLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVL-DLSYNYL  659 (1005)
Q Consensus       581 ~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L-~Ls~N~l  659 (1005)
                      +|++..+...                                       +..+.+.+ ++..+.++++|+.| .+.+...
T Consensus       239 ~L~l~~~~~~---------------------------------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~  278 (594)
T 2p1m_B          239 ELGTGGYTAE---------------------------------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP  278 (594)
T ss_dssp             EEECSBCCCC---------------------------------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG
T ss_pred             EcccccccCc---------------------------------------cchhhHHH-HHHHHhcCCCcccccCCcccch
Confidence            5554433210                                       11112222 22345556666666 3332222


Q ss_pred             cccCCchhhhcCcccccEEECCCCcCCcccc-CccCCCCCccEEeCCCCeeccc-CcccccCCCCCCEEECC--------
Q 047927          660 SGMIPTCLINMSDSQLGVLNLRRNNLNGTVS-ATFPANCSLRTLDLNGNQLEGM-VPKSLANCSVLEILDLG--------  729 (1005)
Q Consensus       660 ~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls--------  729 (1005)
                       +.++..+..++  +|++|++++|.+++... ..+..+++|++|++++| +... ++.....+++|+.|+++        
T Consensus       279 -~~l~~~~~~~~--~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~  354 (594)
T 2p1m_B          279 -AYLPAVYSVCS--RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVME  354 (594)
T ss_dssp             -GGGGGGHHHHT--TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSS
T ss_pred             -hhHHHHHHhhC--CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccc
Confidence             23344444444  56666666666543322 12345566666666666 3321 22222346666666662        


Q ss_pred             -CCcCCCCcchhhh-cCCCCcEEecCCCcCCcccCCCCCCC-CCCCccEEEcc--C----CcccccCChHHHhhhhhhhh
Q 047927          730 -NNQFDDTFPCWVK-NASRLHVLILRSNNFFGNISCPRYNV-SWPMLQIIDLA--S----NKFSGRLPQKWLLNLEAMMV  800 (1005)
Q Consensus       730 -~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~ls--~----N~~~~~~p~~~~~~l~~~~~  800 (1005)
                       .+.+++.....+. .+++|+.|.+..|.+++..  +..+. .+++|+.|+++  +    |.+++......+        
T Consensus       355 ~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~--------  424 (594)
T 2p1m_B          355 PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA--LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF--------  424 (594)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH--HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH--------
T ss_pred             cCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH--HHHHHhhCCCcceeEeecccCCCcccccCCchhhHH--------
Confidence             2344433222232 3666666666666665432  12222 35666677666  2    233211111000        


Q ss_pred             ccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccC-CCCCCEEECCCCc
Q 047927          801 DEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGL-LQSLCALNLSHNA  879 (1005)
Q Consensus       801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~-l~~L~~L~Ls~N~  879 (1005)
                                                          ......+++|+.|+|++ .+++..+..++. +++|+.|+|++|.
T Consensus       425 ------------------------------------~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~  467 (594)
T 2p1m_B          425 ------------------------------------GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG  467 (594)
T ss_dssp             ------------------------------------HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred             ------------------------------------HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence                                                01123456677777766 566555555554 6777777777777


Q ss_pred             CcccCchhh-hcCCCCCEEeCCCCcCcccCcc-cccCCCCCCeEEccCCccc
Q 047927          880 LTGSIPSLI-GNLREIESLDLSMNNLSGTIPA-QLASLNFLSVLNLSYNHLV  929 (1005)
Q Consensus       880 l~g~ip~~~-~~l~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~ls~N~l~  929 (1005)
                      +++..+..+ ..+++|+.|+|++|.+++..+. ....+++|++|++++|+++
T Consensus       468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            766555554 5577777777777777655444 3344677777777777764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=2.8e-23  Score=220.79  Aligned_cols=183  Identities=22%  Similarity=0.200  Sum_probs=117.3

Q ss_pred             cCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCC
Q 047927          693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPM  772 (1005)
Q Consensus       693 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  772 (1005)
                      +..+++|++|++++|++++.  ..+..+++|++|++++|.+++..+..|+++++|++|++++|++++..  +..+..+++
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~  134 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP--DGVFDKLTN  134 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTT
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC--HHHhccCCC
Confidence            33444444444444444432  24444455555555555555444444445555555555555544332  333444555


Q ss_pred             ccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECC
Q 047927          773 LQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFS  852 (1005)
Q Consensus       773 L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  852 (1005)
                      |++|++++|++++..|..+                                                 ..+++|+.|+++
T Consensus       135 L~~L~L~~n~l~~~~~~~~-------------------------------------------------~~l~~L~~L~l~  165 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVF-------------------------------------------------DKLTNLTELDLS  165 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTT-------------------------------------------------TTCTTCCEEECC
T ss_pred             CCEEECCCCccCccCHHHh-------------------------------------------------ccCccCCEEECC
Confidence            5555555555543322110                                                 134567778888


Q ss_pred             CCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccC
Q 047927          853 RNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRI  932 (1005)
Q Consensus       853 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  932 (1005)
                      +|++++..|..++.+++|++|+|++|++++..|..++.+++|+.|+|++|.+.+..|       .|++|+++.|.++|.|
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVV  238 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGB
T ss_pred             CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcc
Confidence            888887777778889999999999999998888888999999999999999886644       6888999999999999


Q ss_pred             CCC
Q 047927          933 PTS  935 (1005)
Q Consensus       933 p~~  935 (1005)
                      |..
T Consensus       239 p~~  241 (272)
T 3rfs_A          239 RNS  241 (272)
T ss_dssp             BCT
T ss_pred             cCc
Confidence            964

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2e-23  Score=226.79  Aligned_cols=230  Identities=20%  Similarity=0.176  Sum_probs=174.1

Q ss_pred             CCCeEEccCccccccC-Cc--hhhhcCcccccEEECCCCcCCccccCcc--CCCCCccEEeCCCCeecccCc----cccc
Q 047927          648 NLLVLDLSYNYLSGMI-PT--CLINMSDSQLGVLNLRRNNLNGTVSATF--PANCSLRTLDLNGNQLEGMVP----KSLA  718 (1005)
Q Consensus       648 ~L~~L~Ls~N~l~~~~-p~--~~~~l~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~l~  718 (1005)
                      .++.+.+.++.++... ..  .+..++  +|++|++++|.+.+..|..+  ..+++|++|+|++|++++..+    ..+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYS--RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHS--CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccC--ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            4566666666654211 11  112233  68888888888887777777  778888888888888886544    3455


Q ss_pred             CCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcc--cCCCCCCCCCCCccEEEccCCcccccCChHHHhhhh
Q 047927          719 NCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGN--ISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLE  796 (1005)
Q Consensus       719 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~  796 (1005)
                      .+++|++|++++|++++..|..|+.+++|++|+|++|++.+.  +..+..+..+++|++|++++|+++. +|...     
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~-----  216 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVC-----  216 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHH-----
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHH-----
Confidence            788888888888888888888888888888888888887653  2123345678899999999998863 12110     


Q ss_pred             hhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCC---CCCCEE
Q 047927          797 AMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLL---QSLCAL  873 (1005)
Q Consensus       797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l---~~L~~L  873 (1005)
                                                              ...+..++.|+.|||++|++++.+|+.++.+   ++|++|
T Consensus       217 ----------------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L  256 (310)
T 4glp_A          217 ----------------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL  256 (310)
T ss_dssp             ----------------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred             ----------------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence                                                    0112356889999999999999989888887   699999


Q ss_pred             ECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927          874 NLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG  930 (1005)
Q Consensus       874 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  930 (1005)
                      +|++|+|+ .+|..+.  ++|+.|||++|+|++. |. +..+++|+.|++++|+++.
T Consensus       257 ~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          257 NLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            99999999 7888775  8999999999999975 43 6788999999999999974

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=8.2e-23  Score=217.22  Aligned_cols=210  Identities=18%  Similarity=0.146  Sum_probs=159.9

Q ss_pred             hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCC
Q 047927          643 ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV  722 (1005)
Q Consensus       643 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  722 (1005)
                      +..+++|+.|++++|.++. + ..+..++  +|++|++++|++++.  ..+..+++|++|++++|.+++..+..|..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~--~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  110 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-V-QGIQYLP--NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTN  110 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCT--TCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cccccceeeeeeCCCCccc-c-cccccCC--CCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence            4566777777777777663 2 2456666  777777777777763  35677777788888888777776677777788


Q ss_pred             CCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhcc
Q 047927          723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE  802 (1005)
Q Consensus       723 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~  802 (1005)
                      |++|++++|++++..+..|+.+++|++|++++|++++..  +..+..+++|+.|++++|++++..|..+           
T Consensus       111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------  177 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDLSYNQLQSLPEGVF-----------  177 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT-----------
T ss_pred             CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC--HHHhccCccCCEEECCCCCcCccCHHHh-----------
Confidence            888888888877777777777788888888888777544  4456777888888888888775444211           


Q ss_pred             CCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcc
Q 047927          803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG  882 (1005)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  882 (1005)
                                                            ..+++|+.|++++|++++..|..++.+++|+.|+|++|.+.+
T Consensus       178 --------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          178 --------------------------------------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             --------------------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             --------------------------------------cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence                                                  135778899999999998888889999999999999999986


Q ss_pred             cCchhhhcCCCCCEEeCCCCcCcccCcccccCCC
Q 047927          883 SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN  916 (1005)
Q Consensus       883 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  916 (1005)
                      ..       ++|+.|+++.|+++|.+|.+++.+.
T Consensus       220 ~~-------~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          220 TC-------PGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CT-------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             cC-------cHHHHHHHHHHhCCCcccCcccccC
Confidence            54       4688999999999999999988764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=5.1e-24  Score=236.87  Aligned_cols=260  Identities=20%  Similarity=0.222  Sum_probs=158.9

Q ss_pred             EEecCCcccccCChhhhccCCCCeEEccCccccccCC----chhhhcCcccccEEECCCCcCCccccCccCCC-----CC
Q 047927          628 FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIP----TCLINMSDSQLGVLNLRRNNLNGTVSATFPAN-----CS  698 (1005)
Q Consensus       628 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~  698 (1005)
                      +.++.|.+++.+|..+...++|++|||++|.+++..+    ..+..++. +|++|+|++|++++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA-SVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCT-TCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCC-ceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4455555565555555555556666666666654444    34444432 46666666666665555444443     66


Q ss_pred             ccEEeCCCCeecccCccc----ccCC-CCCCEEECCCCcCCCCcchhhhc-----CCCCcEEecCCCcCCccc--CCCCC
Q 047927          699 LRTLDLNGNQLEGMVPKS----LANC-SVLEILDLGNNQFDDTFPCWVKN-----ASRLHVLILRSNNFFGNI--SCPRY  766 (1005)
Q Consensus       699 L~~L~L~~N~l~~~~p~~----l~~l-~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~--~~~~~  766 (1005)
                      |++|+|++|++++..+..    +..+ ++|++|++++|++++..+..+..     .++|++|+|++|++.+..  ..+..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            666666666666555543    3333 66777777777766655544332     246777777777665321  00222


Q ss_pred             CCCCC-CccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhc-c
Q 047927          767 NVSWP-MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKIL-N  844 (1005)
Q Consensus       767 ~~~l~-~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  844 (1005)
                      +..++ +|+.|++++|++++..+..+...+                                             ... +
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---------------------------------------------~~~~~  196 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFL---------------------------------------------ASIPA  196 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHH---------------------------------------------HTSCT
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHH---------------------------------------------HhCCC
Confidence            23343 777777877777765554332111                                             122 4


Q ss_pred             cceEEECCCCeeecc----CcccccC-CCCCCEEECCCCcCcccCch----hhhcCCCCCEEeCCCCcCcccC-------
Q 047927          845 IFTSIDFSRNNFEGP----IPEEMGL-LQSLCALNLSHNALTGSIPS----LIGNLREIESLDLSMNNLSGTI-------  908 (1005)
Q Consensus       845 ~l~~L~Ls~N~l~g~----ip~~~~~-l~~L~~L~Ls~N~l~g~ip~----~~~~l~~L~~LdLs~N~l~~~i-------  908 (1005)
                      .|+.|||++|++++.    +|..+.. .++|++|||++|++++..+.    .+..+++|+.|+|++|.+++..       
T Consensus       197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence            678888888888763    4555555 35888888888888875553    3456688888888888855443       


Q ss_pred             cccccCCCCCCeEEccCCcccccCC
Q 047927          909 PAQLASLNFLSVLNLSYNHLVGRIP  933 (1005)
Q Consensus       909 p~~l~~l~~L~~L~ls~N~l~g~ip  933 (1005)
                      +..+.+++.|++||+++|++.+..|
T Consensus       277 ~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          277 GAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHhccCCceEEEecCCCcCCCcch
Confidence            3467788888889999998877633

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=5.2e-22  Score=212.48  Aligned_cols=206  Identities=23%  Similarity=0.236  Sum_probs=140.7

Q ss_pred             hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCC
Q 047927          643 ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV  722 (1005)
Q Consensus       643 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  722 (1005)
                      +.++++++.+++++|.++ .+|..+.  +  +++.|++++|.+++..+..|..+++|++|+|++|.+++..+.  ..+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~--~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--K--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--T--TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--C--CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence            445666777777777776 4554443  2  566777777777666666666666777777777766654322  55666


Q ss_pred             CCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhcc
Q 047927          723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE  802 (1005)
Q Consensus       723 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~  802 (1005)
                      |++|++++|+++ .+|..+..+++|++|++++|++++..  +..+.                                  
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~----------------------------------  121 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLP--LGALR----------------------------------  121 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCC--SSTTT----------------------------------
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccC--HHHHc----------------------------------
Confidence            666666666665 34445555555555555555554321  12222                                  


Q ss_pred             CCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcc
Q 047927          803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG  882 (1005)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  882 (1005)
                                                             .+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++
T Consensus       122 ---------------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G          122 ---------------------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             ---------------------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ---------------------------------------CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence                                                   24556667777777776666677888899999999999986


Q ss_pred             cCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccC
Q 047927          883 SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRI  932 (1005)
Q Consensus       883 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  932 (1005)
                      ..+..+..+++|+.|+|++|+++ .+|..+..+..|+.+++++|++.|.+
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence            65566788999999999999998 67888888889999999999998764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=2.2e-21  Score=207.58  Aligned_cols=214  Identities=21%  Similarity=0.243  Sum_probs=185.4

Q ss_pred             cccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeE
Q 047927          573 ISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVL  652 (1005)
Q Consensus       573 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L  652 (1005)
                      +.+++++++++++++.++...+..+.+++.|++++|.+++..|..+. .++.|++|++++|.+++..+.  ..+++|+.|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            44567788888888888765555677888888888888866555554 589999999999999976443  789999999


Q ss_pred             EccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCc
Q 047927          653 DLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ  732 (1005)
Q Consensus       653 ~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  732 (1005)
                      ++++|+++ .+|..+..++  +|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~--~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCT--TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ECCCCcCC-cCchhhccCC--CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            99999998 7888888888  99999999999999999999999999999999999998888889999999999999999


Q ss_pred             CCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhh
Q 047927          733 FDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL  795 (1005)
Q Consensus       733 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l  795 (1005)
                      +++..+..|..+++|+.|+|++|+++. +  |..+...++|+.+++++|++.+.+...++..|
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~~-i--p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~w  219 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLYT-I--PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW  219 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCC-C--CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHH
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCCc-c--ChhhcccccCCeEEeCCCCccCcCccHHHHHH
Confidence            998888889999999999999999983 3  88888999999999999999987765555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=4.6e-21  Score=203.52  Aligned_cols=206  Identities=19%  Similarity=0.188  Sum_probs=174.5

Q ss_pred             cccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCc
Q 047927          578 SLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN  657 (1005)
Q Consensus       578 ~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N  657 (1005)
                      ..+.++++++.++......+.+++.|++++|++++. |...+..++.|++|++++|.++...+..|..+++|++|++++|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            356666666666643223455677777777777643 3333345889999999999999777777899999999999999


Q ss_pred             cccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCc
Q 047927          658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF  737 (1005)
Q Consensus       658 ~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  737 (1005)
                      ++++..+..+..++  +|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++..
T Consensus        96 ~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           96 KLQALPIGVFDQLV--NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             CCCCCCTTTTTTCS--SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cCCcCCHhHccccc--CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            99977777788887  9999999999999999999999999999999999999887788999999999999999999988


Q ss_pred             chhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCC
Q 047927          738 PCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP  788 (1005)
Q Consensus       738 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p  788 (1005)
                      +..|..+++|++|++++|++++..  +..+..+++|+.|++++|++.+.++
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVP--EGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCC--HHHhccccCCCEEEecCCCeeCCCc
Confidence            888999999999999999998654  5567889999999999999998876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.4e-23  Score=236.12  Aligned_cols=248  Identities=16%  Similarity=0.165  Sum_probs=172.2

Q ss_pred             cCChhhhccCCCCeEEccCccccccCCch----hhhcCcccccEEECCCCc---CCccccCcc-------CCCCCccEEe
Q 047927          638 VIPESICNATNLLVLDLSYNYLSGMIPTC----LINMSDSQLGVLNLRRNN---LNGTVSATF-------PANCSLRTLD  703 (1005)
Q Consensus       638 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~  703 (1005)
                      .++..+..+++|+.|+|++|.+++..+..    +..++  +|++|+|++|.   +++.+|..+       ..+++|++|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~--~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK--DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT--TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC--CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            34556666677777777777766543332    44455  67777777643   333444333       5677788888


Q ss_pred             CCCCeecc----cCcccccCCCCCCEEECCCCcCCCCcchhhhc----C---------CCCcEEecCCCcCC-cccCCC-
Q 047927          704 LNGNQLEG----MVPKSLANCSVLEILDLGNNQFDDTFPCWVKN----A---------SRLHVLILRSNNFF-GNISCP-  764 (1005)
Q Consensus       704 L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~----l---------~~L~~L~L~~N~l~-~~~~~~-  764 (1005)
                      |++|.+++    .+|..+..+++|++|+|++|.+++..+..+..    +         ++|++|++++|++. +.+  + 
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~  178 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM--KE  178 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH--HH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH--HH
Confidence            88887776    46667777788888888888776544433333    3         77888888888776 222  2 


Q ss_pred             --CCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHh
Q 047927          765 --RYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKI  842 (1005)
Q Consensus       765 --~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  842 (1005)
                        ..+..+++|+.|++++|+++..--..+..                                            ..+..
T Consensus       179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~--------------------------------------------~~l~~  214 (386)
T 2ca6_A          179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------------------------------EGLAY  214 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------------------------TTGGG
T ss_pred             HHHHHHhCCCcCEEECcCCCCCHhHHHHHHH--------------------------------------------HHhhc
Confidence              24456678888888888775210000000                                            01124


Q ss_pred             cccceEEECCCCeee----ccCcccccCCCCCCEEECCCCcCccc----Cchhhh--cCCCCCEEeCCCCcCcc----cC
Q 047927          843 LNIFTSIDFSRNNFE----GPIPEEMGLLQSLCALNLSHNALTGS----IPSLIG--NLREIESLDLSMNNLSG----TI  908 (1005)
Q Consensus       843 ~~~l~~L~Ls~N~l~----g~ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~~~--~l~~L~~LdLs~N~l~~----~i  908 (1005)
                      +++|+.|+|++|.++    +.+|..+..+++|++|+|++|++++.    +|..+.  .+++|+.|+|++|.+++    .+
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l  294 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  294 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence            677889999999986    67888899999999999999999876    677773  48999999999999998    58


Q ss_pred             cccc-cCCCCCCeEEccCCcccccCC
Q 047927          909 PAQL-ASLNFLSVLNLSYNHLVGRIP  933 (1005)
Q Consensus       909 p~~l-~~l~~L~~L~ls~N~l~g~ip  933 (1005)
                      |..+ .++++|++|++++|++++..|
T Consensus       295 ~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          295 KTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHhcCCCceEEEccCCcCCcchh
Confidence            8887 678999999999999998765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.4e-21  Score=202.09  Aligned_cols=89  Identities=19%  Similarity=0.201  Sum_probs=70.8

Q ss_pred             ceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccC
Q 047927          846 FTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSY  925 (1005)
Q Consensus       846 l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  925 (1005)
                      |+.|+|++|++++..|..|+.+++|++|+|++|++++..|..++.+++|+.|||++|++++..|..+..+++|++|++++
T Consensus       109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            34444444444444455577888899999999999977777888999999999999999988888899999999999999


Q ss_pred             CcccccCCC
Q 047927          926 NHLVGRIPT  934 (1005)
Q Consensus       926 N~l~g~ip~  934 (1005)
                      |+++|..+.
T Consensus       189 N~~~c~~~~  197 (251)
T 3m19_A          189 NQFDCSRCE  197 (251)
T ss_dssp             CCBCTTSTT
T ss_pred             CceeCCccc
Confidence            999987554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=5.5e-23  Score=228.54  Aligned_cols=262  Identities=18%  Similarity=0.166  Sum_probs=188.9

Q ss_pred             eeCcCCcCccCCCcchhcccCceEEEEecCCcccccCC----hhhhccC-CCCeEEccCccccccCCchhhhc-----Cc
Q 047927          603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIP----ESICNAT-NLLVLDLSYNYLSGMIPTCLINM-----SD  672 (1005)
Q Consensus       603 L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~  672 (1005)
                      .+++.|++++.+|.. ......+++|++++|.+++..+    ..+..++ +|++|+|++|.+++..+..+..+     + 
T Consensus         3 ~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA-   80 (362)
T ss_dssp             EECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-
T ss_pred             cccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-
Confidence            345555555555543 3345568888888888887666    6777787 89999999998887777777765     5 


Q ss_pred             ccccEEECCCCcCCccccCccC----CC-CCccEEeCCCCeecccCcccc----cC-CCCCCEEECCCCcCCCCc----c
Q 047927          673 SQLGVLNLRRNNLNGTVSATFP----AN-CSLRTLDLNGNQLEGMVPKSL----AN-CSVLEILDLGNNQFDDTF----P  738 (1005)
Q Consensus       673 ~~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~~~~----p  738 (1005)
                       +|++|++++|++++..+..+.    .+ ++|++|+|++|++++..+..+    .. .++|++|++++|++++..    +
T Consensus        81 -~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           81 -NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             -TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             -CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence             789999999998877665433    33 789999999999887766554    33 368999999999988644    3


Q ss_pred             hhhhcCC-CCcEEecCCCcCCcccCCCC----CCCCC-CCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchh
Q 047927          739 CWVKNAS-RLHVLILRSNNFFGNISCPR----YNVSW-PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHL  812 (1005)
Q Consensus       739 ~~~~~l~-~L~~L~L~~N~l~~~~~~~~----~~~~l-~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~  812 (1005)
                      .++..++ +|++|+|++|++++..  +.    .+... ++|+.||+++|++.+.....+...                  
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~------------------  219 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKN--CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI------------------  219 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSC--HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH------------------
T ss_pred             HHHhcCCccccEeeecCCCCchhh--HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH------------------
Confidence            4455565 8999999999887543  22    23344 589999999999876433222111                  


Q ss_pred             hheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCc----ccccCCCCCCEEECCCCcCccc-----
Q 047927          813 QYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIP----EEMGLLQSLCALNLSHNALTGS-----  883 (1005)
Q Consensus       813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip----~~~~~l~~L~~L~Ls~N~l~g~-----  883 (1005)
                                                +....+.|+.|||++|.+++..+    ..+..+++|++|+|++|.+.+.     
T Consensus       220 --------------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~  273 (362)
T 3goz_A          220 --------------------------FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC  273 (362)
T ss_dssp             --------------------------HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred             --------------------------HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence                                      11123578999999999997655    3457789999999999995543     


Q ss_pred             --CchhhhcCCCCCEEeCCCCcCcccCccccc
Q 047927          884 --IPSLIGNLREIESLDLSMNNLSGTIPAQLA  913 (1005)
Q Consensus       884 --ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~  913 (1005)
                        ++..+.++++|+.||+++|++.+..|..+.
T Consensus       274 ~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~  305 (362)
T 3goz_A          274 KALGAAFPNIQKIILVDKNGKEIHPSHSIPIS  305 (362)
T ss_dssp             HHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred             HHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence              344677888999999999999987665543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.4e-22  Score=223.61  Aligned_cols=250  Identities=16%  Similarity=0.213  Sum_probs=179.1

Q ss_pred             eEEEEecCCcccccCChhhhcc--CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCcc-ccCccCCCCCccE
Q 047927          625 SIFFSFSKNSLTGVIPESICNA--TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT-VSATFPANCSLRT  701 (1005)
Q Consensus       625 L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  701 (1005)
                      .+.++++++.+.   +..+..+  ++++.|++++|.+.+..+. +..++  +|++|++++|.+++. ++..+..+++|++
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~--~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPF--RVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCB--CCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCC--CCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            455666666654   3455566  7788888888888766554 34454  788888888887765 6667777888888


Q ss_pred             EeCCCCeecccCcccccCCCCCCEEECCCC-cCCCC-cchhhhcCCCCcEEecCCC-cCCcc-cCCCCCCCCCC-CccEE
Q 047927          702 LDLNGNQLEGMVPKSLANCSVLEILDLGNN-QFDDT-FPCWVKNASRLHVLILRSN-NFFGN-ISCPRYNVSWP-MLQII  776 (1005)
Q Consensus       702 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~~~l~-~L~~L  776 (1005)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. +  +..+..++ +|+.|
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~~L~~L  200 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV--QVAVAHVSETITQL  200 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH--HHHHHhcccCCCEE
Confidence            888888888777778888888888888888 56653 6666778888888888888 77643 2  44556677 88888


Q ss_pred             EccCCc--cc-ccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCC
Q 047927          777 DLASNK--FS-GRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSR  853 (1005)
Q Consensus       777 ~ls~N~--~~-~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~  853 (1005)
                      ++++|.  ++ +.+|.                                                 ....+++|+.|++++
T Consensus       201 ~l~~~~~~~~~~~l~~-------------------------------------------------~~~~~~~L~~L~l~~  231 (336)
T 2ast_B          201 NLSGYRKNLQKSDLST-------------------------------------------------LVRRCPNLVHLDLSD  231 (336)
T ss_dssp             ECCSCGGGSCHHHHHH-------------------------------------------------HHHHCTTCSEEECTT
T ss_pred             EeCCCcccCCHHHHHH-------------------------------------------------HHhhCCCCCEEeCCC
Confidence            888884  33 11221                                                 122467889999999


Q ss_pred             Ce-eeccCcccccCCCCCCEEECCCCc-CcccCchhhhcCCCCCEEeCCCCcCcccCcccccCC-CCCCeEEccCCcccc
Q 047927          854 NN-FEGPIPEEMGLLQSLCALNLSHNA-LTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL-NFLSVLNLSYNHLVG  930 (1005)
Q Consensus       854 N~-l~g~ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g  930 (1005)
                      |. +++..+..++.+++|++|+|++|. ++......++++++|+.|++++| ++..   .+..+ ..+..|++++|+++|
T Consensus       232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCC
T ss_pred             CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCcc
Confidence            98 788888888999999999999995 33222236788899999999988 4322   34444 247778889999999


Q ss_pred             cCCCC
Q 047927          931 RIPTS  935 (1005)
Q Consensus       931 ~ip~~  935 (1005)
                      ..|..
T Consensus       308 ~~~~~  312 (336)
T 2ast_B          308 IARPT  312 (336)
T ss_dssp             TTCSS
T ss_pred             ccCCc
Confidence            88753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.2e-20  Score=204.11  Aligned_cols=194  Identities=21%  Similarity=0.321  Sum_probs=120.7

Q ss_pred             hccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCC
Q 047927          644 CNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVL  723 (1005)
Q Consensus       644 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  723 (1005)
                      ..+++|+.|++++|.++. +| .+..++  +|++|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~--~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L  109 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT-IE-GVQYLN--NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI  109 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCT--TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred             HHcCCcCEEEeeCCCccC-ch-hhhccC--CCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence            345566666666666552 33 344444  55555555555554443  55555555555555555532  245555555


Q ss_pred             CEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccC
Q 047927          724 EILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG  803 (1005)
Q Consensus       724 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~  803 (1005)
                      ++|++++|++++..+  +..+++|++|++++|+                          +++..+               
T Consensus       110 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~--------------------------l~~~~~---------------  146 (308)
T 1h6u_A          110 KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ--------------------------ITNISP---------------  146 (308)
T ss_dssp             CEEECTTSCCCCCGG--GTTCTTCCEEECCSSC--------------------------CCCCGG---------------
T ss_pred             CEEECCCCCCCCchh--hcCCCCCCEEECCCCc--------------------------cCcCcc---------------
Confidence            555555555554321  4444444444444444                          433211               


Q ss_pred             CchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCccc
Q 047927          804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGS  883 (1005)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~  883 (1005)
                                                          +..+++|+.|++++|++++..|  ++.+++|+.|+|++|++++.
T Consensus       147 ------------------------------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          147 ------------------------------------LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             ------------------------------------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             ------------------------------------ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence                                                0134567777777777775433  78888888888988888864


Q ss_pred             CchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927          884 IPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG  930 (1005)
Q Consensus       884 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  930 (1005)
                      .|  +..+++|+.|+|++|++++..|  +..+++|++|++++|++++
T Consensus       189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            43  7888889999999998886654  7888889999999998876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.5e-21  Score=203.38  Aligned_cols=196  Identities=18%  Similarity=0.157  Sum_probs=117.8

Q ss_pred             cccEEECCCCcCCccccCccCCCCCccEEeCCCCe-ecccCcccccCCCCCCEEECCC-CcCCCCcchhhhcCCCCcEEe
Q 047927          674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQ-LEGMVPKSLANCSVLEILDLGN-NQFDDTFPCWVKNASRLHVLI  751 (1005)
Q Consensus       674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~  751 (1005)
                      +|++|++++|++++..+..|..+++|++|++++|+ ++++.+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666666666666666667777777765 6655555666677777777776 666666566666666777777


Q ss_pred             cCCCcCCcccCCCCCCCCCCCcc---EEEccCC-cccccCChHHHhhhhhhhhccCCchhhhchhhheeccccccccccc
Q 047927          752 LRSNNFFGNISCPRYNVSWPMLQ---IIDLASN-KFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDA  827 (1005)
Q Consensus       752 L~~N~l~~~~~~~~~~~~l~~L~---~L~ls~N-~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (1005)
                      +++|++++ +  |. +..+++|+   .|++++| .+++..+..+                                    
T Consensus       112 l~~n~l~~-l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~------------------------------------  151 (239)
T 2xwt_C          112 IFNTGLKM-F--PD-LTKVYSTDIFFILEITDNPYMTSIPVNAF------------------------------------  151 (239)
T ss_dssp             EEEECCCS-C--CC-CTTCCBCCSEEEEEEESCTTCCEECTTTT------------------------------------
T ss_pred             CCCCCCcc-c--cc-cccccccccccEEECCCCcchhhcCcccc------------------------------------
Confidence            77766655 2  33 44555555   6666666 5543222110                                    


Q ss_pred             EEEEEcchHHHHHHhcccce-EEECCCCeeeccCcccccCCCCCCEEECCCCc-CcccCchhhhcC-CCCCEEeCCCCcC
Q 047927          828 ITVTIKGLEMKLAKILNIFT-SIDFSRNNFEGPIPEEMGLLQSLCALNLSHNA-LTGSIPSLIGNL-REIESLDLSMNNL  904 (1005)
Q Consensus       828 ~~~~~~~~~~~~~~~~~~l~-~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l-~~L~~LdLs~N~l  904 (1005)
                                   ..++.|+ .|++++|+++ .+|......++|+.|+|++|+ +++..|..++.+ ++|+.||+++|++
T Consensus       152 -------------~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          152 -------------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             -------------TTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred             -------------cchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence                         1245556 6666666666 344332223667777777773 665555566666 6777777777777


Q ss_pred             cccCcccccCCCCCCeEEccCC
Q 047927          905 SGTIPAQLASLNFLSVLNLSYN  926 (1005)
Q Consensus       905 ~~~ip~~l~~l~~L~~L~ls~N  926 (1005)
                      ++. |..  .+++|+.|+++++
T Consensus       218 ~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          218 TAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCC-CCT--TCTTCSEEECTTC
T ss_pred             ccC-Chh--HhccCceeeccCc
Confidence            643 332  4556666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=2.2e-22  Score=226.26  Aligned_cols=238  Identities=17%  Similarity=0.172  Sum_probs=188.6

Q ss_pred             ccCceEEEEecCCcccccCC----hhhhccCCCCeEEccCc---cccccCCchh-------hhcCcccccEEECCCCcCC
Q 047927          621 FMSLSIFFSFSKNSLTGVIP----ESICNATNLLVLDLSYN---YLSGMIPTCL-------INMSDSQLGVLNLRRNNLN  686 (1005)
Q Consensus       621 ~~~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~~~L~~L~L~~n~l~  686 (1005)
                      .++.+++|++++|.+++..+    ..+..+++|++|+|++|   ++++.+|..+       ..++  +|++|+|++|.++
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~--~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP--KLHTVRLSDNAFG  107 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT--TCCEEECCSCCCC
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC--cccEEECCCCcCC
Confidence            36778888898888886533    34668899999999986   4555666655       4566  8999999999998


Q ss_pred             c----cccCccCCCCCccEEeCCCCeecccCccc----ccCC---------CCCCEEECCCCcCC-CCcc---hhhhcCC
Q 047927          687 G----TVSATFPANCSLRTLDLNGNQLEGMVPKS----LANC---------SVLEILDLGNNQFD-DTFP---CWVKNAS  745 (1005)
Q Consensus       687 ~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l---------~~L~~L~Ls~N~l~-~~~p---~~~~~l~  745 (1005)
                      +    .++..+..+++|++|+|++|.+++..+..    +..+         ++|++|++++|+++ +.+|   ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            8    46777888899999999999997554443    3344         89999999999998 4455   4677899


Q ss_pred             CCcEEecCCCcCCcc--cC-CCCCCCCCCCccEEEccCCcccc----cCChHHHhhhhhhhhccCCchhhhchhhheecc
Q 047927          746 RLHVLILRSNNFFGN--IS-CPRYNVSWPMLQIIDLASNKFSG----RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLN  818 (1005)
Q Consensus       746 ~L~~L~L~~N~l~~~--~~-~~~~~~~l~~L~~L~ls~N~~~~----~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  818 (1005)
                      +|++|++++|++...  .. .+..+..+++|+.|++++|.++.    .+|..                            
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----------------------------  239 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA----------------------------  239 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH----------------------------
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH----------------------------
Confidence            999999999998721  10 14477889999999999999862    22211                            


Q ss_pred             cccccccccEEEEEcchHHHHHHhcccceEEECCCCeeecc----Ccccc--cCCCCCCEEECCCCcCcc----cCchhh
Q 047927          819 LSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGP----IPEEM--GLLQSLCALNLSHNALTG----SIPSLI  888 (1005)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~----ip~~~--~~l~~L~~L~Ls~N~l~g----~ip~~~  888 (1005)
                                           +..++.|+.|+|++|.+++.    +|..+  +.+++|+.|+|++|.+++    .+|..+
T Consensus       240 ---------------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          240 ---------------------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             ---------------------GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             ---------------------HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence                                 12467899999999999986    67777  449999999999999998    589888


Q ss_pred             -hcCCCCCEEeCCCCcCcccCc
Q 047927          889 -GNLREIESLDLSMNNLSGTIP  909 (1005)
Q Consensus       889 -~~l~~L~~LdLs~N~l~~~ip  909 (1005)
                       .++++|++|+|++|++++..|
T Consensus       299 ~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          299 DEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHCTTCCEEECTTSBSCTTSH
T ss_pred             HhcCCCceEEEccCCcCCcchh
Confidence             779999999999999998875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=4.5e-21  Score=199.69  Aligned_cols=197  Identities=15%  Similarity=0.169  Sum_probs=131.1

Q ss_pred             CCCeEEccCccccccCCchhhhcCcccccEEECCCCc-CCccccCccCCCCCccEEeCCC-CeecccCcccccCCCCCCE
Q 047927          648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN-LNGTVSATFPANCSLRTLDLNG-NQLEGMVPKSLANCSVLEI  725 (1005)
Q Consensus       648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~  725 (1005)
                      +|+.|++++|++++..+..+..++  +|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|..+++|++
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~--~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLP--NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCT--TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             cccEEEEeCCcceEECHHHccCCC--CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            566666666666654444555555  56666666665 5555555666666666666666 6666555566666666666


Q ss_pred             EECCCCcCCCCcchhhhcCCCCc---EEecCCC-cCCcccCCCCCCCCCCCcc-EEEccCCcccccCChHHHhhhhhhhh
Q 047927          726 LDLGNNQFDDTFPCWVKNASRLH---VLILRSN-NFFGNISCPRYNVSWPMLQ-IIDLASNKFSGRLPQKWLLNLEAMMV  800 (1005)
Q Consensus       726 L~Ls~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L~ls~N~~~~~~p~~~~~~l~~~~~  800 (1005)
                      |++++|++++ +|. |..+++|+   +|++++| ++.+..  +..+..+++|+ .|++++|+++ .+|...+        
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~--------  176 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYNNGFT-SVQGYAF--------  176 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCSCCCC-EECTTTT--------
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCCCCCc-ccCHhhc--------
Confidence            6666666665 444 56666666   6666666 665433  34456667777 7777777766 4443221        


Q ss_pred             ccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCe-eeccCcccccCC-CCCCEEECCCC
Q 047927          801 DEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNN-FEGPIPEEMGLL-QSLCALNLSHN  878 (1005)
Q Consensus       801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~g~ip~~~~~l-~~L~~L~Ls~N  878 (1005)
                                                               ..+.|+.|+|++|+ +++..|..|+++ ++|+.|||++|
T Consensus       177 -----------------------------------------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          177 -----------------------------------------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             -----------------------------------------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             -----------------------------------------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence                                                     12467889999994 887777889999 99999999999


Q ss_pred             cCcccCchhhhcCCCCCEEeCCCCc
Q 047927          879 ALTGSIPSLIGNLREIESLDLSMNN  903 (1005)
Q Consensus       879 ~l~g~ip~~~~~l~~L~~LdLs~N~  903 (1005)
                      ++++ +|..  .+++|+.|+++++.
T Consensus       216 ~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          216 SVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             cccc-CChh--HhccCceeeccCcc
Confidence            9994 5654  68899999998763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=4e-21  Score=208.56  Aligned_cols=205  Identities=20%  Similarity=0.178  Sum_probs=127.0

Q ss_pred             CceEEEEecCCcccccCChhh--hccCCCCeEEccCccccccCC----chhhhcCcccccEEECCCCcCCccccCccCCC
Q 047927          623 SLSIFFSFSKNSLTGVIPESI--CNATNLLVLDLSYNYLSGMIP----TCLINMSDSQLGVLNLRRNNLNGTVSATFPAN  696 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l  696 (1005)
                      +.+++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..++  +|++|++++|++.+..+..|..+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP--GLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS--CCCEEEEECCSSCCCCTTSCCCC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc--CCCEEEeeCCCcchhhHHHhccC
Confidence            446677777777776666666  667777777777777765444    2223344  66666666666666666666666


Q ss_pred             CCccEEeCCCCeeccc--C--cccccCCCCCCEEECCCCcCCCCcc--h-hhhcCCCCcEEecCCCcCCcccCCCCCCCC
Q 047927          697 CSLRTLDLNGNQLEGM--V--PKSLANCSVLEILDLGNNQFDDTFP--C-WVKNASRLHVLILRSNNFFGNISCPRYNVS  769 (1005)
Q Consensus       697 ~~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p--~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  769 (1005)
                      ++|++|+|++|++.+.  +  +..+..+++|++|++++|+++...+  . .++++++|++|+|++|++.+..  |..+..
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--p~~~~~  246 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV--NPSAPR  246 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC--CSCCSS
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc--hhhHHh
Confidence            6666666666665431  1  1223556666666666666652211  1 2345555665555555555433  222222


Q ss_pred             CCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEE
Q 047927          770 WPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSI  849 (1005)
Q Consensus       770 l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  849 (1005)
                      +.                                                                      .++.|+.|
T Consensus       247 ~~----------------------------------------------------------------------~~~~L~~L  256 (310)
T 4glp_A          247 CM----------------------------------------------------------------------WSSALNSL  256 (310)
T ss_dssp             CC----------------------------------------------------------------------CCTTCCCE
T ss_pred             cc----------------------------------------------------------------------CcCcCCEE
Confidence            10                                                                      12456677


Q ss_pred             ECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcc
Q 047927          850 DFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG  906 (1005)
Q Consensus       850 ~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~  906 (1005)
                      +|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|+.|+|++|+++.
T Consensus       257 ~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          257 NLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             ECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            77777777 5676664  7889999999999863 44 6788899999999998874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=8.8e-20  Score=191.30  Aligned_cols=161  Identities=23%  Similarity=0.247  Sum_probs=142.2

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL  702 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  702 (1005)
                      +.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..++  +|++|++++|++++..+..|..+++|++|
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT--ELGTLGLANNQLASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC--cCCEEECCCCcccccChhHhcccCCCCEE
Confidence            4567778888888877788888999999999999999988888888887  89999999999998888889999999999


Q ss_pred             eCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCc
Q 047927          703 DLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNK  782 (1005)
Q Consensus       703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~  782 (1005)
                      +|++|++++..+..|..+++|++|++++|++++..+..|+.+++|++|+|++|++++..  +..+..+++|+.|++++|+
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP--HGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCC
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCc
Confidence            99999999887778899999999999999999888888999999999999999998765  5678889999999999999


Q ss_pred             ccccC
Q 047927          783 FSGRL  787 (1005)
Q Consensus       783 ~~~~~  787 (1005)
                      +.+..
T Consensus       191 ~~c~~  195 (251)
T 3m19_A          191 FDCSR  195 (251)
T ss_dssp             BCTTS
T ss_pred             eeCCc
Confidence            99873

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=7.8e-20  Score=197.70  Aligned_cols=147  Identities=24%  Similarity=0.307  Sum_probs=119.4

Q ss_pred             cCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccE
Q 047927          622 MSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT  701 (1005)
Q Consensus       622 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  701 (1005)
                      ++.+++|++++|.++. +| .+..+++|+.|++++|.+++..+  +..++  +|++|++++|++++.  ..+..+++|++
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~--~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLT--KITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCC--SCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCC--CCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            5678889999998875 34 68899999999999999986444  88887  899999999999875  36889999999


Q ss_pred             EeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCC
Q 047927          702 LDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN  781 (1005)
Q Consensus       702 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N  781 (1005)
                      |++++|++++. + .+..+++|++|++++|++++..+  ++.+++|+.|++++|++++..   . +..+++|+.|++++|
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT---P-LANLSKLTTLKADDN  183 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSS
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh---h-hcCCCCCCEEECCCC
Confidence            99999999975 3 39999999999999999997655  888999999999999887532   1 555555555555555


Q ss_pred             ccc
Q 047927          782 KFS  784 (1005)
Q Consensus       782 ~~~  784 (1005)
                      +++
T Consensus       184 ~l~  186 (308)
T 1h6u_A          184 KIS  186 (308)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.4e-21  Score=215.56  Aligned_cols=234  Identities=19%  Similarity=0.248  Sum_probs=181.4

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCcccccc-CCchhhhcCcccccEEECCCCcCCccccCccCCCCCccE
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM-IPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT  701 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  701 (1005)
                      ..++.+++++|.+.+..+. +..+++|+.|++++|.+++. +|..+..++  +|++|++++|.+++..+..+..+++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~--~L~~L~L~~~~l~~~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS--KLQNLSLEGLRLSDPIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC--CCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCC--CCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence            6778888888888877665 45688899999999988765 777788887  8999999999988888888888899999


Q ss_pred             EeCCCC-eeccc-CcccccCCCCCCEEECCCC-cCCCC-cchhhhcCC-CCcEEecCCC--cCC-cccCCCCCCCCCCCc
Q 047927          702 LDLNGN-QLEGM-VPKSLANCSVLEILDLGNN-QFDDT-FPCWVKNAS-RLHVLILRSN--NFF-GNISCPRYNVSWPML  773 (1005)
Q Consensus       702 L~L~~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~~~l~~L  773 (1005)
                      |++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.+  |..+..+++|
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l--~~~~~~~~~L  224 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL--STLVRRCPNL  224 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH--HHHHHHCTTC
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH--HHHHhhCCCC
Confidence            999999 67753 6677888899999999999 88865 677888899 9999999999  454 233  4556678899


Q ss_pred             cEEEccCCc-ccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECC
Q 047927          774 QIIDLASNK-FSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFS  852 (1005)
Q Consensus       774 ~~L~ls~N~-~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  852 (1005)
                      +.|++++|. +++..+..+                                                 ..+++|+.|+++
T Consensus       225 ~~L~l~~~~~l~~~~~~~l-------------------------------------------------~~l~~L~~L~l~  255 (336)
T 2ast_B          225 VHLDLSDSVMLKNDCFQEF-------------------------------------------------FQLNYLQHLSLS  255 (336)
T ss_dssp             SEEECTTCTTCCGGGGGGG-------------------------------------------------GGCTTCCEEECT
T ss_pred             CEEeCCCCCcCCHHHHHHH-------------------------------------------------hCCCCCCEeeCC
Confidence            999999998 655444321                                                 135788999999


Q ss_pred             CCe-eeccCcccccCCCCCCEEECCCCcCcccCchhhhcC-CCCCEEeCCCCcCcccCcccccC
Q 047927          853 RNN-FEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNL-REIESLDLSMNNLSGTIPAQLAS  914 (1005)
Q Consensus       853 ~N~-l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l-~~L~~LdLs~N~l~~~ip~~l~~  914 (1005)
                      +|. ++......++++++|+.|+|++| ++.   +.+..+ ++++.|++++|++++..|..+++
T Consensus       256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            995 33222236888999999999999 443   234444 34778889999999999998775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=3.1e-20  Score=215.04  Aligned_cols=188  Identities=27%  Similarity=0.346  Sum_probs=94.9

Q ss_pred             CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927          648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD  727 (1005)
Q Consensus       648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  727 (1005)
                      +|+.|++++|.+++ +|..+.  +  +|+.|+|++|+++. +|   ..+++|++|++++|++++ +|. +..  +|+.|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~--~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--P--QITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--T--TCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCc-cCHhHc--C--CCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            55555555555553 443332  2  45555555555552 22   223455555555555554 333 333  555555


Q ss_pred             CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927          728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS  807 (1005)
Q Consensus       728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~  807 (1005)
                      +++|++++ +|.   .+++|+.|+|++|++++ +  |.   .+++|+.|++++|++++ +|. +                
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l--p~---~l~~L~~L~Ls~N~L~~-lp~-l----------------  178 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-L--PE---LPTSLEVLSVRNNQLTF-LPE-L----------------  178 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C--CC---CCTTCCEEECCSSCCSC-CCC-C----------------
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCc-C--CC---cCCCcCEEECCCCCCCC-cch-h----------------
Confidence            55555554 333   34555555555555543 2  22   34455555555555544 331 1                


Q ss_pred             hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCC-------CEEECCCCcC
Q 047927          808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL-------CALNLSHNAL  880 (1005)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L-------~~L~Ls~N~l  880 (1005)
                                                         .++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|
T Consensus       179 -----------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l  219 (571)
T 3cvr_A          179 -----------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI  219 (571)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred             -----------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence                                               023455555555555 4444 433  44       6666666666


Q ss_pred             cccCchhhhcCCCCCEEeCCCCcCcccCcccccCCC
Q 047927          881 TGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN  916 (1005)
Q Consensus       881 ~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~  916 (1005)
                      + .||..+.++++|+.|||++|.+++.+|..+..++
T Consensus       220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            6 4566666666666666666666666666555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=7.1e-20  Score=212.05  Aligned_cols=183  Identities=27%  Similarity=0.387  Sum_probs=157.7

Q ss_pred             cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecC
Q 047927          674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR  753 (1005)
Q Consensus       674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  753 (1005)
                      +++.|++++|.+++ +|..+.  ++|++|+|++|+++ .+|   ..+++|+.|++++|++++ +|. +.+  +|++|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            79999999999998 555443  78999999999999 566   557999999999999998 666 665  99999999


Q ss_pred             CCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEc
Q 047927          754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIK  833 (1005)
Q Consensus       754 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (1005)
                      +|++++ +  |.   .+++|+.|++++|++++ +|.                                            
T Consensus       129 ~N~l~~-l--p~---~l~~L~~L~Ls~N~l~~-lp~--------------------------------------------  157 (571)
T 3cvr_A          129 NNQLTM-L--PE---LPALLEYINADNNQLTM-LPE--------------------------------------------  157 (571)
T ss_dssp             SSCCSC-C--CC---CCTTCCEEECCSSCCSC-CCC--------------------------------------------
T ss_pred             CCcCCC-C--CC---cCccccEEeCCCCccCc-CCC--------------------------------------------
Confidence            999987 4  55   68999999999999986 552                                            


Q ss_pred             chHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCC-------CEEeCCCCcCcc
Q 047927          834 GLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREI-------ESLDLSMNNLSG  906 (1005)
Q Consensus       834 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L-------~~LdLs~N~l~~  906 (1005)
                              .+++|+.|+|++|++++ +|. |.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ 
T Consensus       158 --------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-  220 (571)
T 3cvr_A          158 --------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-  220 (571)
T ss_dssp             --------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred             --------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence                    14678999999999997 887 76  99999999999999 7888 665  77       99999999999 


Q ss_pred             cCcccccCCCCCCeEEccCCcccccCCCC
Q 047927          907 TIPAQLASLNFLSVLNLSYNHLVGRIPTS  935 (1005)
Q Consensus       907 ~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  935 (1005)
                      .+|..+..+++|++|||++|+|+|.+|..
T Consensus       221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          221 HIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            58998989999999999999999998853

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1e-19  Score=184.97  Aligned_cols=135  Identities=24%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEE
Q 047927          647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEIL  726 (1005)
Q Consensus       647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  726 (1005)
                      ++|++|++++|++++..+..+..++  +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELT--SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccc--cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            3566666666666544444455555  56666666666665555555566666666666666665555555666666666


Q ss_pred             ECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccc
Q 047927          727 DLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG  785 (1005)
Q Consensus       727 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~  785 (1005)
                      ++++|++++..+..|..+++|++|++++|++++..  +..+..+++|+.|++++|++.+
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBCC
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeC--HHHhccCCCccEEEecCCCeec
Confidence            66666666555555555666666666666555432  2234444455555544444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.7e-19  Score=197.60  Aligned_cols=239  Identities=18%  Similarity=0.202  Sum_probs=135.1

Q ss_pred             EEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCcccc-CccCCCCCccE-EeCC
Q 047927          628 FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS-ATFPANCSLRT-LDLN  705 (1005)
Q Consensus       628 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~  705 (1005)
                      ++.++++++ .+|..+  .+++++|+|++|+|+...+..|.+++  +|++|+|++|++.+.++ .+|.+++++++ +.++
T Consensus        14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~--~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCT--TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCC--CCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            444455554 334433  24566666666666643344556655  66666666666554433 35566665543 4455


Q ss_pred             CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCC-cCCcccCCCCCCCCC-CCccEEEccCCcc
Q 047927          706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN-NFFGNISCPRYNVSW-PMLQIIDLASNKF  783 (1005)
Q Consensus       706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l-~~L~~L~ls~N~~  783 (1005)
                      +|+++++.|+.|..+++|++|++++|+++...+..+....++..|++.++ ++.. +. +..+..+ ..++.|++++|++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~-~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IE-RNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-EC-TTSSTTSBSSCEEEECCSSCC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc-cc-ccchhhcchhhhhhccccccc
Confidence            56666666666666666666666666666655555555566666666543 3332 21 2223333 3466677777776


Q ss_pred             cccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCc-c
Q 047927          784 SGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIP-E  862 (1005)
Q Consensus       784 ~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip-~  862 (1005)
                      +. +|...+                                                 ..+.++.+++++|+..+.|| +
T Consensus       167 ~~-i~~~~f-------------------------------------------------~~~~L~~l~l~~~n~l~~i~~~  196 (350)
T 4ay9_X          167 QE-IHNSAF-------------------------------------------------NGTQLDELNLSDNNNLEELPND  196 (350)
T ss_dssp             CE-ECTTSS-------------------------------------------------TTEEEEEEECTTCTTCCCCCTT
T ss_pred             cC-CChhhc-------------------------------------------------cccchhHHhhccCCcccCCCHH
Confidence            53 222111                                                 12456677776533333454 4


Q ss_pred             cccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCc
Q 047927          863 EMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNH  927 (1005)
Q Consensus       863 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~  927 (1005)
                      .|+++++|++||||+|+|+. +|..  .+.+|+.|.+.++.--..+|. +.++++|+.++++++.
T Consensus       197 ~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          197 VFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             TTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             HhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence            56778888888888888874 4442  245555555554443345663 7777778888877654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=1.8e-19  Score=183.01  Aligned_cols=181  Identities=20%  Similarity=0.199  Sum_probs=122.4

Q ss_pred             CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECC
Q 047927          650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG  729 (1005)
Q Consensus       650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  729 (1005)
                      +.++.+++.++ .+|..+.  +  +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        10 ~~v~c~~~~l~-~~p~~~~--~--~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGIP--A--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TEEECCSSCCS-SCCSCCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCcc-CCCCCCC--C--CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            45666666665 3444332  2  67777777777776666667777777777777777776666666777777777777


Q ss_pred             CCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhh
Q 047927          730 NNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSEL  809 (1005)
Q Consensus       730 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~  809 (1005)
                      +|++++..+..|..+++|++|++++|++++..  +..+..                                        
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~----------------------------------------  122 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLP--DGVFDK----------------------------------------  122 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTT----------------------------------------
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccC--HhHhcc----------------------------------------
Confidence            77777666666666666666666666665432  222233                                        


Q ss_pred             chhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhh
Q 047927          810 KHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIG  889 (1005)
Q Consensus       810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~  889 (1005)
                                                       +++|+.|+|++|++++..+..++.+++|++|+|++|.+.+.      
T Consensus       123 ---------------------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------  163 (208)
T 2o6s_A          123 ---------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------  163 (208)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------
T ss_pred             ---------------------------------CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------
Confidence                                             34556666666666655555677788888888888877753      


Q ss_pred             cCCCCCEEeCCCCcCcccCcccccCCCC
Q 047927          890 NLREIESLDLSMNNLSGTIPAQLASLNF  917 (1005)
Q Consensus       890 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~  917 (1005)
                       +++|+.|+++.|+++|.+|+.++.++.
T Consensus       164 -~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          164 -CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -CCCHHHHHHHHHhCCceeeccCccccC
Confidence             456788888888888888888877654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=3.5e-19  Score=182.03  Aligned_cols=89  Identities=25%  Similarity=0.203  Sum_probs=72.3

Q ss_pred             ceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccC
Q 047927          846 FTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSY  925 (1005)
Q Consensus       846 l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  925 (1005)
                      |+.|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|+.|||++|++++..|..|..+++|++|++++
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            34444444444445566677888899999999999988888899999999999999999988899999999999999999


Q ss_pred             CcccccCCC
Q 047927          926 NHLVGRIPT  934 (1005)
Q Consensus       926 N~l~g~ip~  934 (1005)
                      |+++|.++.
T Consensus       163 N~l~c~c~l  171 (220)
T 2v70_A          163 NPFNCNCYL  171 (220)
T ss_dssp             CCEECSGGG
T ss_pred             cCCcCCCch
Confidence            999987763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=1.2e-18  Score=192.44  Aligned_cols=225  Identities=16%  Similarity=0.126  Sum_probs=176.9

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCc-hhhhcCccccc-EEECCCCcCCccccCccCCCCCcc
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPT-CLINMSDSQLG-VLNLRRNNLNGTVSATFPANCSLR  700 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~  700 (1005)
                      +++++|++++|+++...+..|.++++|++|+|++|++.+.+|. .|.+++  ++. .+.+++|+++.+.|..|..+++|+
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~--~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP--KLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT--TCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch--hhhhhhcccCCcccccCchhhhhccccc
Confidence            5677888888888876667899999999999999998766654 566776  555 467778999999999999999999


Q ss_pred             EEeCCCCeecccCcccccCCCCCCEEECCC-CcCCCCcchhhhcCC-CCcEEecCCCcCCcccCCCCCCCCCCCccEEEc
Q 047927          701 TLDLNGNQLEGMVPKSLANCSVLEILDLGN-NQFDDTFPCWVKNAS-RLHVLILRSNNFFGNISCPRYNVSWPMLQIIDL  778 (1005)
Q Consensus       701 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l  778 (1005)
                      +|++++|++++..+..+....++..|++.+ |++....+..|..+. .++.|+|++|+++. +  |.......+|+.+++
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i--~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-I--HNSAFNGTQLDELNL  184 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-E--CTTSSTTEEEEEEEC
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-C--ChhhccccchhHHhh
Confidence            999999999988777788888899999966 577766667777775 68899999999975 3  666667789999999


Q ss_pred             cCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeec
Q 047927          779 ASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG  858 (1005)
Q Consensus       779 s~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g  858 (1005)
                      ++|+..+.+|...+                                                ..+++|+.||||+|+|+.
T Consensus       185 ~~~n~l~~i~~~~f------------------------------------------------~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          185 SDNNNLEELPNDVF------------------------------------------------HGASGPVILDISRTRIHS  216 (350)
T ss_dssp             TTCTTCCCCCTTTT------------------------------------------------TTEECCSEEECTTSCCCC
T ss_pred             ccCCcccCCCHHHh------------------------------------------------ccCcccchhhcCCCCcCc
Confidence            87666667775432                                                146789999999999995


Q ss_pred             cCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcC
Q 047927          859 PIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNL  904 (1005)
Q Consensus       859 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l  904 (1005)
                      ..+..   +.+|+.|.+.++.--..+|. +.++++|+.++++++.-
T Consensus       217 lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          217 LPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSH  258 (350)
T ss_dssp             CCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHH
T ss_pred             cChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCcc
Confidence            44433   55666666655544447785 88999999999987654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=1.9e-18  Score=191.49  Aligned_cols=105  Identities=25%  Similarity=0.293  Sum_probs=71.3

Q ss_pred             CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccC-CCCCccEEeCCCCeecccCcccccCCCCCCEEEC
Q 047927          650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFP-ANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL  728 (1005)
Q Consensus       650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  728 (1005)
                      +.++++++.++ .+|..+..    .++.|+|++|++++..+..|. .+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~~----~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLPS----YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCCT----TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcC-ccCccCCC----CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            46777777776 45654432    567777777777777666666 7777777777777777766667777777777777


Q ss_pred             CCCcCCCCcchhhhcCCCCcEEecCCCcCCc
Q 047927          729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFG  759 (1005)
Q Consensus       729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  759 (1005)
                      ++|++++..+..|..+++|++|+|++|++.+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  126 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVV  126 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence            7777776666666666666666666665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=2.4e-18  Score=175.81  Aligned_cols=72  Identities=19%  Similarity=0.182  Sum_probs=57.0

Q ss_pred             ccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCC
Q 047927          862 EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIP  933 (1005)
Q Consensus       862 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip  933 (1005)
                      ..|+++++|++|+|++|++++..|..|..+++|+.|||++|+|++..|..|..+++|++|++++|++.|..+
T Consensus        98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            345667778888888888887777778888888888888888887777778888888888888888887543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=3.3e-18  Score=183.08  Aligned_cols=187  Identities=24%  Similarity=0.296  Sum_probs=115.2

Q ss_pred             eEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCC
Q 047927          651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGN  730 (1005)
Q Consensus       651 ~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  730 (1005)
                      .+.+..+.+++..+  +..++  +|+.|++++|.+...  ..+..+++|++|++++|++++..+  +..+++|++|++++
T Consensus        28 ~~~l~~~~~~~~~~--~~~l~--~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           28 KDNLKKKSVTDAVT--QNELN--SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHTTCSCTTSEEC--HHHHH--TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHhcCCCcccccc--hhhcC--cccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            34455555543322  23343  566666666666544  235555666666666666664433  55666666666666


Q ss_pred             CcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhc
Q 047927          731 NQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELK  810 (1005)
Q Consensus       731 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~  810 (1005)
                      |++++. | .+..+++|++|++++|++.+.    ..+.                                          
T Consensus       100 n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~----~~l~------------------------------------------  131 (291)
T 1h6t_A          100 NKVKDL-S-SLKDLKKLKSLSLEHNGISDI----NGLV------------------------------------------  131 (291)
T ss_dssp             SCCCCG-G-GGTTCTTCCEEECTTSCCCCC----GGGG------------------------------------------
T ss_pred             CcCCCC-h-hhccCCCCCEEECCCCcCCCC----hhhc------------------------------------------
Confidence            665542 2 245555555555555544321    1122                                          


Q ss_pred             hhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhc
Q 047927          811 HLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGN  890 (1005)
Q Consensus       811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  890 (1005)
                                                     .+++|+.|++++|++++.  +.++.+++|+.|+|++|++++..|  ++.
T Consensus       132 -------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~  176 (291)
T 1h6t_A          132 -------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG  176 (291)
T ss_dssp             -------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             -------------------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC
Confidence                                           345667777777777654  467778888888888888886544  778


Q ss_pred             CCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927          891 LREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG  930 (1005)
Q Consensus       891 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  930 (1005)
                      +++|+.|+|++|++++ +| .+..+++|+.|++++|+++.
T Consensus       177 l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            8888888888888875 34 37888888888888888776

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=1e-17  Score=171.19  Aligned_cols=162  Identities=21%  Similarity=0.225  Sum_probs=132.8

Q ss_pred             EEEecCCcccccCChhhhccCCCCeEEccCccccccCC-chhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCC
Q 047927          627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIP-TCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLN  705 (1005)
Q Consensus       627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  705 (1005)
                      .+++++|.++. +|..+  ...++.|++++|++++..| ..+..++  +|++|++++|++++..+..|..+++|++|+|+
T Consensus        15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~--~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLP--QLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCC--CCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            56667776664 45444  3456788888888887644 4467777  88888888888888888888888999999999


Q ss_pred             CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccc
Q 047927          706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG  785 (1005)
Q Consensus       706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~  785 (1005)
                      +|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..  |..+..+++|+.|++++|++.+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecCcCCcC
Confidence            99998888888889999999999999999888888999999999999999988766  7788889999999999999999


Q ss_pred             cCChHHHhhh
Q 047927          786 RLPQKWLLNL  795 (1005)
Q Consensus       786 ~~p~~~~~~l  795 (1005)
                      .++..|+..+
T Consensus       168 ~c~l~~l~~~  177 (220)
T 2v70_A          168 NCYLAWLGEW  177 (220)
T ss_dssp             SGGGHHHHHH
T ss_pred             CCchHHHHHH
Confidence            8887776543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1.3e-17  Score=170.44  Aligned_cols=162  Identities=20%  Similarity=0.248  Sum_probs=128.5

Q ss_pred             EEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927          627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG  706 (1005)
Q Consensus       627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  706 (1005)
                      .++++++.++ .+|..+.  ++|+.|++++|++++..+..+..++  +|++|+|++|++++..|..|.++++|++|+|++
T Consensus        15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~--~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK--KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT--TCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC--CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            4555666655 3444432  5788888888888876666777777  788888888888888888888888888888888


Q ss_pred             CeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccccc
Q 047927          707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR  786 (1005)
Q Consensus       707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~  786 (1005)
                      |++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..  +..+..+++|+.|++++|++.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA--KGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCEECS
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC--HHHHhCCCCCCEEEeCCCCcCCC
Confidence            8888776677888888888888888888888888888888888888888888754  55677888999999999999888


Q ss_pred             CChHHHhhh
Q 047927          787 LPQKWLLNL  795 (1005)
Q Consensus       787 ~p~~~~~~l  795 (1005)
                      .+..|+..+
T Consensus       168 c~l~~l~~~  176 (220)
T 2v9t_B          168 CHLKWLADY  176 (220)
T ss_dssp             GGGHHHHHH
T ss_pred             CccHHHHHH
Confidence            777776543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.3e-17  Score=169.85  Aligned_cols=90  Identities=22%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927          844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL  923 (1005)
Q Consensus       844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  923 (1005)
                      ++|+.|+|++|++++..|..|+.+++|++|+|++|+|+ .+|..++.+++|+.|+|++|+|++..+..+..+++|+.|++
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            44555566666666555666788999999999999999 78999999999999999999999888888999999999999


Q ss_pred             cCCcccccCCC
Q 047927          924 SYNHLVGRIPT  934 (1005)
Q Consensus       924 s~N~l~g~ip~  934 (1005)
                      ++|+++|.++.
T Consensus       167 ~~N~~~c~c~~  177 (229)
T 3e6j_A          167 FGNPWDCECRD  177 (229)
T ss_dssp             TTSCBCTTBGG
T ss_pred             eCCCccCCcch
Confidence            99999998764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=6.8e-18  Score=198.00  Aligned_cols=191  Identities=20%  Similarity=0.274  Sum_probs=121.5

Q ss_pred             CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927          648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD  727 (1005)
Q Consensus       648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  727 (1005)
                      .+..+.+..+.+.+..+  +..+.  +|+.|++++|.+....  .+..+++|+.|+|++|++++..|  +..+++|+.|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~--~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELN--SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHT--TCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHhccCCCcccccc--hhcCC--CCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            35556667776665433  44555  7778888888776542  46777777777777777776544  77777777777


Q ss_pred             CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927          728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS  807 (1005)
Q Consensus       728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~  807 (1005)
                      |++|++++.  ..+..+++|+.|+|++|++.+    ...+..+++|+.|+|++|++++. +.                  
T Consensus        94 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~----l~~l~~l~~L~~L~Ls~N~l~~l-~~------------------  148 (605)
T 1m9s_A           94 LDENKIKDL--SSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKITDI-TV------------------  148 (605)
T ss_dssp             CCSSCCCCC--TTSTTCTTCCEEECTTSCCCC----CGGGGGCTTCSEEECCSSCCCCC-GG------------------
T ss_pred             CcCCCCCCC--hhhccCCCCCEEEecCCCCCC----CccccCCCccCEEECCCCccCCc-hh------------------
Confidence            777777752  256777777777777777764    23455666666666666666542 10                  


Q ss_pred             hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh
Q 047927          808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL  887 (1005)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~  887 (1005)
                                                      +..+++|+.|+|++|++++.+|  +..+++|+.|+|++|+|++ +| .
T Consensus       149 --------------------------------l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~  192 (605)
T 1m9s_A          149 --------------------------------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-A  192 (605)
T ss_dssp             --------------------------------GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-G
T ss_pred             --------------------------------hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-H
Confidence                                            0124556666666666665544  6666666666666666664 23 3


Q ss_pred             hhcCCCCCEEeCCCCcCccc
Q 047927          888 IGNLREIESLDLSMNNLSGT  907 (1005)
Q Consensus       888 ~~~l~~L~~LdLs~N~l~~~  907 (1005)
                      +..+++|+.|+|++|++++.
T Consensus       193 l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GTTCTTCSEEECCSEEEECC
T ss_pred             HccCCCCCEEEccCCcCcCC
Confidence            56666666666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.2e-17  Score=178.77  Aligned_cols=190  Identities=18%  Similarity=0.213  Sum_probs=151.3

Q ss_pred             EEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927          627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG  706 (1005)
Q Consensus       627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  706 (1005)
                      .+.+..+.+++..  .+..+++|+.|++++|.+... + .+..++  +|++|++++|++++..+  +..+++|++|++++
T Consensus        28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~--~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLP--NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCT--TCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCC--CCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            3445566665543  356789999999999999854 4 477777  99999999999998776  89999999999999


Q ss_pred             CeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccccc
Q 047927          707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR  786 (1005)
Q Consensus       707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~  786 (1005)
                      |++++.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|++++.    ..+.                  
T Consensus       100 n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----~~l~------------------  153 (291)
T 1h6t_A          100 NKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLS------------------  153 (291)
T ss_dssp             SCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGG------------------
T ss_pred             CcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc----hhhc------------------
Confidence            999963  3499999999999999999975  5688999999999999988642    1222                  


Q ss_pred             CChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccC
Q 047927          787 LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGL  866 (1005)
Q Consensus       787 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~  866 (1005)
                                                                             .+++|+.|++++|++++..|  ++.
T Consensus       154 -------------------------------------------------------~l~~L~~L~L~~N~l~~~~~--l~~  176 (291)
T 1h6t_A          154 -------------------------------------------------------RLTKLDTLSLEDNQISDIVP--LAG  176 (291)
T ss_dssp             -------------------------------------------------------GCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             -------------------------------------------------------cCCCCCEEEccCCccccchh--hcC
Confidence                                                                   24556677777777776544  788


Q ss_pred             CCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCc
Q 047927          867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIP  909 (1005)
Q Consensus       867 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip  909 (1005)
                      +++|+.|+|++|++++ +|. +..+++|+.|++++|+++....
T Consensus       177 l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          177 LTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             CTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred             CCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCCcc
Confidence            8899999999999985 554 8889999999999999886433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=2.6e-17  Score=193.06  Aligned_cols=207  Identities=18%  Similarity=0.188  Sum_probs=111.4

Q ss_pred             hccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCC
Q 047927          644 CNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVL  723 (1005)
Q Consensus       644 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  723 (1005)
                      ..+++|+.|++++|.+.. +| .+..++  +|+.|+|++|++++..+  +..+++|+.|+|++|.+++. | .+..+++|
T Consensus        40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~--~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L  111 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKS-VQ-GIQYLP--NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKL  111 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCC-CT-TGGGCT--TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTC
T ss_pred             hcCCCCCEEECcCCCCCC-Ch-HHccCC--CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCC
Confidence            445555555555555542 22 344554  55556666555555444  55555566666666655532 2 45555666


Q ss_pred             CEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccC
Q 047927          724 EILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG  803 (1005)
Q Consensus       724 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~  803 (1005)
                      +.|+|++|++++.  ..+..+++|+.|+|++|++++.    ..+..+++|+.|+|++|.+.+..|   +           
T Consensus       112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~~~~---l-----------  171 (605)
T 1m9s_A          112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP---L-----------  171 (605)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCCCGG---G-----------
T ss_pred             CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCCCchh---h-----------
Confidence            6666666665542  2355556666666666655542    344555666666666666554433   0           


Q ss_pred             CchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCccc
Q 047927          804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGS  883 (1005)
Q Consensus       804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~  883 (1005)
                                                           ..++.|+.|+|++|++++. | .+..+++|+.|+|++|++++.
T Consensus       172 -------------------------------------~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          172 -------------------------------------AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -------------------------------------TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             -------------------------------------ccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence                                                 0244556666666666643 2 466666666666666666643


Q ss_pred             C---------chhh----hcCCCCCEEeCCCCcCcccCcccccCCCC
Q 047927          884 I---------PSLI----GNLREIESLDLSMNNLSGTIPAQLASLNF  917 (1005)
Q Consensus       884 i---------p~~~----~~l~~L~~LdLs~N~l~~~ip~~l~~l~~  917 (1005)
                      .         |..+    +.....+.+...++...|.+|..++.+..
T Consensus       213 p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~~l~~~~~  259 (605)
T 1m9s_A          213 PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN  259 (605)
T ss_dssp             CCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEECCCSSCCS
T ss_pred             cccccccEEecccccccCCCCcCchhcccCCcccCCcceeccccccc
Confidence            1         1111    22233445555556666666666665544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=8.2e-17  Score=165.62  Aligned_cols=155  Identities=21%  Similarity=0.183  Sum_probs=128.4

Q ss_pred             EEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCC
Q 047927          626 IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLN  705 (1005)
Q Consensus       626 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  705 (1005)
                      +.++.+++.++ .+|..+  .++|+.|+|++|++++..|..+..++  +|++|+|++|++....+..|..+++|++|+|+
T Consensus        22 ~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLI--NLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCcc--CCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            34666666665 444443  37888999999999888788888887  89999999999988777888889999999999


Q ss_pred             CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccc
Q 047927          706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG  785 (1005)
Q Consensus       706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~  785 (1005)
                      +|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|+|++|++.+..  +..+..+++|+.|++++|++.+
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP--HGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCCccC
Confidence            99999877778889999999999999998 67888889999999999999988654  4567888999999999999998


Q ss_pred             cCC
Q 047927          786 RLP  788 (1005)
Q Consensus       786 ~~p  788 (1005)
                      .++
T Consensus       174 ~c~  176 (229)
T 3e6j_A          174 ECR  176 (229)
T ss_dssp             TBG
T ss_pred             Ccc
Confidence            876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=1.9e-17  Score=165.17  Aligned_cols=116  Identities=22%  Similarity=0.295  Sum_probs=97.4

Q ss_pred             hcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 047927          842 ILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVL  921 (1005)
Q Consensus       842 ~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  921 (1005)
                      .+++|+.|+|++|++++.+|..|+++++|++|+|++|+|++..|..++++++|++|||++|++++.+|..+..+++|++|
T Consensus        52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence            46778899999999999899999999999999999999999989889999999999999999999999999999999999


Q ss_pred             EccCCcccccCCCCCcccccccccccCCCCCCCCCC
Q 047927          922 NLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPL  957 (1005)
Q Consensus       922 ~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~  957 (1005)
                      ++++|+++|.+|...-...+....+.++...|+.|.
T Consensus       132 ~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             ECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             EeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            999999999887432112223334556666676553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=3.6e-17  Score=172.07  Aligned_cols=167  Identities=19%  Similarity=0.282  Sum_probs=103.7

Q ss_pred             ccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCC
Q 047927          675 LGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRS  754 (1005)
Q Consensus       675 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  754 (1005)
                      +..+++++|.+++..  .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+  +..+++|++|++++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence            444444555544333  34445556666666666553 23 45666666666666666665444  66666666666666


Q ss_pred             CcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcc
Q 047927          755 NNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKG  834 (1005)
Q Consensus       755 N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  834 (1005)
                      |++++.   |....  ++                                                              
T Consensus        95 N~l~~l---~~~~~--~~--------------------------------------------------------------  107 (263)
T 1xeu_A           95 NRLKNL---NGIPS--AC--------------------------------------------------------------  107 (263)
T ss_dssp             SCCSCC---TTCCC--SS--------------------------------------------------------------
T ss_pred             CccCCc---Ccccc--Cc--------------------------------------------------------------
Confidence            665542   11111  33                                                              


Q ss_pred             hHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccC
Q 047927          835 LEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLAS  914 (1005)
Q Consensus       835 ~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~  914 (1005)
                                 |+.|+|++|++++ +| .++.+++|++|+|++|++++. | .++.+++|+.|+|++|++++.  ..+..
T Consensus       108 -----------L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~  170 (263)
T 1xeu_A          108 -----------LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTR  170 (263)
T ss_dssp             -----------CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTT
T ss_pred             -----------ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhcc
Confidence                       4445555555554 22 467777888888888888753 4 577788888888888888766  66778


Q ss_pred             CCCCCeEEccCCccccc
Q 047927          915 LNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       915 l~~L~~L~ls~N~l~g~  931 (1005)
                      +++|+.|++++|++++.
T Consensus       171 l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          171 LKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCCCCEEEEEEEEEECC
T ss_pred             CCCCCEEeCCCCcccCC
Confidence            88888888888888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=6.2e-17  Score=179.36  Aligned_cols=162  Identities=22%  Similarity=0.159  Sum_probs=109.7

Q ss_pred             eEEEEecCCcccccCChhhh-ccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEe
Q 047927          625 SIFFSFSKNSLTGVIPESIC-NATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLD  703 (1005)
Q Consensus       625 L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  703 (1005)
                      ++.|++++|++++..+..+. .+++|+.|+|++|++++..+..|..++  +|++|+|++|++++..+..|..+++|++|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP--NLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC--CCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            45566666666655555565 677777777777777766666677766  777777777777777666777777777777


Q ss_pred             CCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhh---hcCCCCcEEecCCCcCCcccCCCCCCCCCCC--ccEEEc
Q 047927          704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWV---KNASRLHVLILRSNNFFGNISCPRYNVSWPM--LQIIDL  778 (1005)
Q Consensus       704 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~--L~~L~l  778 (1005)
                      |++|++++..|..|..+++|+.|+|++|++++..+..|   ..+++|+.|+|++|++++..  +..+..++.  ++.|++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~~~l~~l~l  196 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP--LTDLQKLPAWVKNGLYL  196 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC--HHHHHHSCHHHHTTEEC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC--HHHhhhccHhhcceEEe
Confidence            77777777767777777777777777777776555555   45777777777777776432  233444554  367888


Q ss_pred             cCCcccccCChH
Q 047927          779 ASNKFSGRLPQK  790 (1005)
Q Consensus       779 s~N~~~~~~p~~  790 (1005)
                      ++|++.+.+...
T Consensus       197 ~~N~~~C~C~l~  208 (361)
T 2xot_A          197 HNNPLECDCKLY  208 (361)
T ss_dssp             CSSCEECCHHHH
T ss_pred             cCCCccCCcCcH
Confidence            888888766543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=1.5e-19  Score=211.00  Aligned_cols=78  Identities=23%  Similarity=0.181  Sum_probs=42.7

Q ss_pred             cccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccC-chhhhcCCCCCEEeCCCCcCcccCccc---ccCCCCC
Q 047927          843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSI-PSLIGNLREIESLDLSMNNLSGTIPAQ---LASLNFL  918 (1005)
Q Consensus       843 ~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~i-p~~~~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L  918 (1005)
                      +++|+.|+|++|++++ +| .++++++|++|+|++|+|++.+ |..++.+++|+.|+|++|++++.+|..   +..+++|
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L  562 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV  562 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence            3444455555555554 44 5556666666666666666554 666666666666666666666554421   2235555


Q ss_pred             CeEE
Q 047927          919 SVLN  922 (1005)
Q Consensus       919 ~~L~  922 (1005)
                      ++||
T Consensus       563 ~~L~  566 (567)
T 1dce_A          563 SSIL  566 (567)
T ss_dssp             SEEE
T ss_pred             CccC
Confidence            5554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=4.2e-17  Score=163.75  Aligned_cols=155  Identities=15%  Similarity=0.171  Sum_probs=106.1

Q ss_pred             CCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCc
Q 047927          694 PANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPML  773 (1005)
Q Consensus       694 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L  773 (1005)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..  +..+..+   
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l---  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDK--IPNLSGL---  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGG--SCCCTTC---
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCccc--ChhhcCC---
Confidence            45567778888888777 344 57777777777777776543  335666666666666666665433  3333333   


Q ss_pred             cEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCC
Q 047927          774 QIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSR  853 (1005)
Q Consensus       774 ~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~  853 (1005)
                                                                                            ++|+.|++++
T Consensus       112 ----------------------------------------------------------------------~~L~~L~Ls~  121 (197)
T 4ezg_A          112 ----------------------------------------------------------------------TSLTLLDISH  121 (197)
T ss_dssp             ----------------------------------------------------------------------TTCCEEECCS
T ss_pred             ----------------------------------------------------------------------CCCCEEEecC
Confidence                                                                                  4455666666


Q ss_pred             CeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927          854 NNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG  930 (1005)
Q Consensus       854 N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g  930 (1005)
                      |++++..|..++.+++|++|+|++|++.+.+| .++.+++|+.|++++|++++ +| .+..+++|++|++++|++.+
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            66666667777888888888888888334566 58888888999999888886 33 68888889999999988754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.3e-19  Score=211.35  Aligned_cols=206  Identities=21%  Similarity=0.216  Sum_probs=144.6

Q ss_pred             hccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCC
Q 047927          644 CNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVL  723 (1005)
Q Consensus       644 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  723 (1005)
                      ..+++|+.|+|++|+++ .+|..+.+++  +|+.|++++|......+..           +..+...+..|+.++.+++|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~--~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L  411 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCK--ELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTL  411 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHH--HHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHH--HHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhc
Confidence            45677888888888886 6787887777  7777777665421111100           00112233445555555555


Q ss_pred             CEEE-CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhcc
Q 047927          724 EILD-LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE  802 (1005)
Q Consensus       724 ~~L~-Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~  802 (1005)
                      +.|+ ++.|.+           ..|..+.+.+|.+.+..  +      ..|+.|++++|.+++ +|. +           
T Consensus       412 ~~L~~l~~n~~-----------~~L~~l~l~~n~i~~l~--~------~~L~~L~Ls~n~l~~-lp~-~-----------  459 (567)
T 1dce_A          412 KAVDPMRAAYL-----------DDLRSKFLLENSVLKME--Y------ADVRVLHLAHKDLTV-LCH-L-----------  459 (567)
T ss_dssp             HHHCGGGHHHH-----------HHHHHHHHHHHHHHHHH--H------TTCSEEECTTSCCSS-CCC-G-----------
T ss_pred             ccCcchhhccc-----------chhhhhhhhcccccccC--c------cCceEEEecCCCCCC-CcC-c-----------
Confidence            5555 444432           22333444444443321  0      136677777777765 442 1           


Q ss_pred             CCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcc
Q 047927          803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG  882 (1005)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g  882 (1005)
                                                            ..+++|+.|+|++|+++ .+|..|+++++|+.|+|++|+|++
T Consensus       460 --------------------------------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          460 --------------------------------------EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             --------------------------------------GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             --------------------------------------cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence                                                  14677889999999998 889999999999999999999997


Q ss_pred             cCchhhhcCCCCCEEeCCCCcCcccC-cccccCCCCCCeEEccCCcccccCCCCC
Q 047927          883 SIPSLIGNLREIESLDLSMNNLSGTI-PAQLASLNFLSVLNLSYNHLVGRIPTST  936 (1005)
Q Consensus       883 ~ip~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~~~  936 (1005)
                       +| .++++++|+.|||++|+|++.+ |..++.+++|+.|+|++|+|++.+|...
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence             78 8999999999999999999998 9999999999999999999999877543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=4.7e-17  Score=171.17  Aligned_cols=124  Identities=19%  Similarity=0.265  Sum_probs=71.6

Q ss_pred             cCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCE
Q 047927          646 ATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEI  725 (1005)
Q Consensus       646 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  725 (1005)
                      +.++..+++++|.+++. + .+..++  +|++|++++|.++...  .+..+++|++|++++|++++..+  +..+++|+.
T Consensus        18 l~~l~~l~l~~~~i~~~-~-~~~~l~--~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL-V-SQKELS--GVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE-E-CHHHHT--TCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHhcCCCcccc-c-chhhcC--cCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            34455555666665532 2 345555  5666666666665432  45666677777777777765443  667777777


Q ss_pred             EECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccc
Q 047927          726 LDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS  784 (1005)
Q Consensus       726 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~  784 (1005)
                      |++++|++++..+ . .. ++|+.|++++|++++.    ..+..+++|+.|++++|+++
T Consensus        90 L~L~~N~l~~l~~-~-~~-~~L~~L~L~~N~l~~~----~~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           90 LSVNRNRLKNLNG-I-PS-ACLSRLFLDNNELRDT----DSLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             EECCSSCCSCCTT-C-CC-SSCCEEECCSSCCSBS----GGGTTCTTCCEEECTTSCCC
T ss_pred             EECCCCccCCcCc-c-cc-CcccEEEccCCccCCC----hhhcCcccccEEECCCCcCC
Confidence            7777777765322 2 22 6777777777777642    22444444555444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=9.9e-18  Score=202.10  Aligned_cols=155  Identities=21%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccc---------cCCchhhhcCcccccEEECCCCcCCccccCcc
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSG---------MIPTCLINMSDSQLGVLNLRRNNLNGTVSATF  693 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---------~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~  693 (1005)
                      +....|++.+|.+... +..+     |+.++|+.|.+.+         ..|..+..+.  .|+.|+|++|.+. .+|..+
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~--~L~~L~Ls~n~l~-~l~~~~  243 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQ--LWHALDLSNLQIF-NISANI  243 (727)
T ss_dssp             -------------------------------------------------------CCC--CCCEEECTTSCCS-CCCGGG
T ss_pred             CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCC--CCcEEECCCCCCC-CCChhh
Confidence            4467788888887753 3332     3344444444332         4466777777  8999999999988 455555


Q ss_pred             CCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCc
Q 047927          694 PANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPML  773 (1005)
Q Consensus       694 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L  773 (1005)
                      ..+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+|..|+++++|++|+|++|.+. .+  |..+..+++|
T Consensus       244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l--p~~~~~l~~L  318 (727)
T 4b8c_D          244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL--PWEFGNLCNL  318 (727)
T ss_dssp             GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC--CSSTTSCTTC
T ss_pred             cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc--ChhhhcCCCc
Confidence            68889999999999998 77888899999999999999998 67888999999999999999886 34  7778889999


Q ss_pred             cEEEccCCcccccCChHH
Q 047927          774 QIIDLASNKFSGRLPQKW  791 (1005)
Q Consensus       774 ~~L~ls~N~~~~~~p~~~  791 (1005)
                      +.|+|++|++++.+|..+
T Consensus       319 ~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          319 QFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CCEECTTSCCCSHHHHHH
T ss_pred             cEEeCCCCccCCCChHHH
Confidence            999999999988877554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=5.4e-16  Score=155.57  Aligned_cols=153  Identities=16%  Similarity=0.172  Sum_probs=131.5

Q ss_pred             ccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCcc
Q 047927          621 FMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR  700 (1005)
Q Consensus       621 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  700 (1005)
                      .++.+++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..++  +|++|++++|++++..+..+..+++|+
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLS--NLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCT--TCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCC--CCCEEEeECCccCcccChhhcCCCCCC
Confidence            3677899999999998 455 6899999999999999775  334778887  899999999999998899999999999


Q ss_pred             EEeCCCCeecccCcccccCCCCCCEEECCCCc-CCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEcc
Q 047927          701 TLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ-FDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLA  779 (1005)
Q Consensus       701 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls  779 (1005)
                      +|++++|++++..|..+..+++|++|++++|+ ++. +| .+..+++|++|++++|++++.   + .+..+++|+.|+++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~---~-~l~~l~~L~~L~l~  189 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY---R-GIEDFPKLNQLYAF  189 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC---T-TGGGCSSCCEEEEC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh---H-HhccCCCCCEEEee
Confidence            99999999998889999999999999999998 665 45 689999999999999999862   3 67889999999999


Q ss_pred             CCcccc
Q 047927          780 SNKFSG  785 (1005)
Q Consensus       780 ~N~~~~  785 (1005)
                      +|++.+
T Consensus       190 ~N~i~~  195 (197)
T 4ezg_A          190 SQTIGG  195 (197)
T ss_dssp             BC----
T ss_pred             CcccCC
Confidence            999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=7.1e-16  Score=153.78  Aligned_cols=138  Identities=25%  Similarity=0.282  Sum_probs=108.2

Q ss_pred             CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccC-ccCCCCCccEEeCCCCeecccCcccccCCCCCCEEEC
Q 047927          650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA-TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL  728 (1005)
Q Consensus       650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  728 (1005)
                      +.+++++|.++ .+|..+..    ++++|++++|++++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            56777777775 56654432    677888888888777664 4777888888888888888877888888888888888


Q ss_pred             CCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhh
Q 047927          729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLN  794 (1005)
Q Consensus       729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~  794 (1005)
                      ++|++++..|..|..+++|++|+|++|++++..  |..+..+++|+.|++++|++++.++..|+..
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~  149 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWFAE  149 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCcCcchHHHH
Confidence            888888887877888888888888888888766  7778888889999999999998888766544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=5.5e-17  Score=195.59  Aligned_cols=116  Identities=26%  Similarity=0.296  Sum_probs=60.9

Q ss_pred             ChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccC
Q 047927          640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLAN  719 (1005)
Q Consensus       640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  719 (1005)
                      |..+..++.|+.|+|++|.+. .+|..+..++  +|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+|..|..
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~--~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYD--FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCC--SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCC--CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            444555555555555555555 4444444554  5555555555555 44455555555555555555555 44555555


Q ss_pred             CCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCccc
Q 047927          720 CSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNI  761 (1005)
Q Consensus       720 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  761 (1005)
                      +++|++|+|++|.++ .+|..|+++++|++|+|++|++++.+
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence            555555555555554 34444555555555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=145.10  Aligned_cols=138  Identities=20%  Similarity=0.218  Sum_probs=86.7

Q ss_pred             CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECC
Q 047927          650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG  729 (1005)
Q Consensus       650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  729 (1005)
                      +.+++++|.++ .+|..+.  .  +|++|++++|+++ .+|..|..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~--~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--R--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--T--TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCCC-cCCCCCC--C--CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            34555555555 3444332  1  5666666666665 334556666666666666666666666666666666666666


Q ss_pred             CCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhh
Q 047927          730 NNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL  795 (1005)
Q Consensus       730 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l  795 (1005)
                      +|++++..|..|..+++|++|+|++|++++..  +..+..+++|+.|++++|++.+.+...|+..+
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~  150 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP--EGAFNDLSALSHLAIGANPLYCDCNMQWLSDW  150 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeC--hhhhhcCccccEEEeCCCCeecCCcCHHHHHH
Confidence            66666666666666666667777776666432  33466677777888888888777776666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.4e-14  Score=141.29  Aligned_cols=83  Identities=23%  Similarity=0.175  Sum_probs=46.3

Q ss_pred             eEEECCCCeeeccCcccccCCCCCCEEECCCCcCccc-CchhhhcCCCCCEEeCCCCcCcccCc---ccccCCCCCCeEE
Q 047927          847 TSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGS-IPSLIGNLREIESLDLSMNNLSGTIP---AQLASLNFLSVLN  922 (1005)
Q Consensus       847 ~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~~~ip---~~l~~l~~L~~L~  922 (1005)
                      +.|+|++|++++.+|..++.+++|++|+|++|++++. .+..++.+++|+.|++++|.+++..+   ..+..+++|++||
T Consensus        74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred             CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence            3333333333333444444556666666666666642 12556666666666666666665544   3566666666666


Q ss_pred             ccCCccc
Q 047927          923 LSYNHLV  929 (1005)
Q Consensus       923 ls~N~l~  929 (1005)
                      +++|.+.
T Consensus       154 l~~n~~~  160 (168)
T 2ell_A          154 GYDREDQ  160 (168)
T ss_dssp             TEETTSC
T ss_pred             CCCCChh
Confidence            6666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=3.7e-14  Score=139.48  Aligned_cols=133  Identities=22%  Similarity=0.194  Sum_probs=106.6

Q ss_pred             CCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEEC
Q 047927          649 LLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL  728 (1005)
Q Consensus       649 L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  728 (1005)
                      .+.+++++|.++ .+|..+.  +  +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~--~--~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP--S--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCCc-cCCCCCC--C--CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            456777777776 4554432  2  7888888888888777777888888888888888888777777888888999999


Q ss_pred             CCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCC
Q 047927          729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP  788 (1005)
Q Consensus       729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p  788 (1005)
                      ++|++++..+..|..+++|++|++++|++++..  +..+..+++|+.|++++|++.+.+|
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeC--HHHhcCCcccCEEEecCCCeeccCc
Confidence            999888888888888889999999999887543  4445778999999999999998877

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=9.9e-15  Score=159.50  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             ccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCcc-EEeCCCCeecccCcccccCCCCC
Q 047927          645 NATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR-TLDLNGNQLEGMVPKSLANCSVL  723 (1005)
Q Consensus       645 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L  723 (1005)
                      .+++|+.++|++|+++...+..|.++.  +|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~--~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKK--YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCT--TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCC--CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence            367778888887777765566677776  7777777776 7667777777777787 777777 6666667777888888


Q ss_pred             CEEECCCCcCCCCcchhhhcCCCCcEEe
Q 047927          724 EILDLGNNQFDDTFPCWVKNASRLHVLI  751 (1005)
Q Consensus       724 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  751 (1005)
                      +.+++++|.++.+.+..|.++++|+.++
T Consensus       300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          300 RYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEEeCCCccCccchhhhcCCcchhhhc
Confidence            8888777777777777777777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=2.5e-14  Score=136.28  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=22.1

Q ss_pred             ccccCCCCCCEEECCCCcCcccCc---hhhhcCCCCCEEeCC
Q 047927          862 EEMGLLQSLCALNLSHNALTGSIP---SLIGNLREIESLDLS  900 (1005)
Q Consensus       862 ~~~~~l~~L~~L~Ls~N~l~g~ip---~~~~~l~~L~~LdLs  900 (1005)
                      ..++.+++|++|++++|++++..+   ..++.+++|+.||++
T Consensus       107 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          107 EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            345555566666666666665443   355566666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=3.9e-14  Score=140.96  Aligned_cols=128  Identities=23%  Similarity=0.347  Sum_probs=101.3

Q ss_pred             EEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927          627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG  706 (1005)
Q Consensus       627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  706 (1005)
                      ++++++|.++ .+|..+  .++|+.|++++|+++ .+|..+..++  +|+.|++++|++++..+..|.++++|++|+|++
T Consensus        14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~--~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK--HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc--CCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            4566666665 344443  257888888888887 6777788777  788888888888888888888888888888888


Q ss_pred             CeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcc
Q 047927          707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGN  760 (1005)
Q Consensus       707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  760 (1005)
                      |++++..|..|..+++|++|+|++|+++...+..|..+++|+.|++++|++.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            888888788888888888888888888877777788888888888888887653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=1.2e-14  Score=141.65  Aligned_cols=133  Identities=20%  Similarity=0.120  Sum_probs=92.9

Q ss_pred             cCCCCeEEccCcccc-ccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927          646 ATNLLVLDLSYNYLS-GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE  724 (1005)
Q Consensus       646 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  724 (1005)
                      .++|+.|++++|.++ +.+|..+..++  +|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~--~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFV--NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGG--GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCC--CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            356777777777776 56666666665  677777777777665  5667777777777777777766677676777777


Q ss_pred             EEECCCCcCCCCc-chhhhcCCCCcEEecCCCcCCcccCCC---CCCCCCCCccEEEccCCccc
Q 047927          725 ILDLGNNQFDDTF-PCWVKNASRLHVLILRSNNFFGNISCP---RYNVSWPMLQIIDLASNKFS  784 (1005)
Q Consensus       725 ~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~~l~~L~~L~ls~N~~~  784 (1005)
                      +|++++|++++.. +..+..+++|+.|++++|++++..  +   ..+..+++|+.|++++|.+.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN--DYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST--THHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH--HHHHHHHHhCccCcEecCCCCChh
Confidence            7777777777643 266777777777777777776542  2   25667777777777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.2e-14  Score=138.47  Aligned_cols=127  Identities=20%  Similarity=0.191  Sum_probs=71.4

Q ss_pred             CCCCeEEccCcccc-ccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCE
Q 047927          647 TNLLVLDLSYNYLS-GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEI  725 (1005)
Q Consensus       647 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  725 (1005)
                      ++|+.|++++|.++ +.+|..+..++  +|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFE--ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCT--TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcC--CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            34555555555554 44555445544  555555555555544  44555566666666666666555555555666666


Q ss_pred             EECCCCcCCCC-cchhhhcCCCCcEEecCCCcCCcccCCC---CCCCCCCCccEEEcc
Q 047927          726 LDLGNNQFDDT-FPCWVKNASRLHVLILRSNNFFGNISCP---RYNVSWPMLQIIDLA  779 (1005)
Q Consensus       726 L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~~l~~L~~L~ls  779 (1005)
                      |++++|++++. .+..++.+++|++|++++|++++..  +   ..+..+++|+.||++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN--DYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST--THHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH--HHHHHHHHHCCCcccccCC
Confidence            66666666553 2355666666666666666665432  1   234556666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=1.3e-13  Score=135.53  Aligned_cols=131  Identities=21%  Similarity=0.256  Sum_probs=96.3

Q ss_pred             EEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCC
Q 047927          626 IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLN  705 (1005)
Q Consensus       626 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  705 (1005)
                      +.++++++.++. +|..+  .++|+.|++++|++++..+..+..++  +|++|++++|++++..+..|..+++|++|+++
T Consensus        10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLT--QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcc--cccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            345555555553 33322  35778888888888766556666766  78888888888887777777788888888888


Q ss_pred             CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCccc
Q 047927          706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNI  761 (1005)
Q Consensus       706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  761 (1005)
                      +|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            88888777777788888888888888888776666777888888888888877643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.48  E-value=2.3e-14  Score=156.58  Aligned_cols=247  Identities=12%  Similarity=0.103  Sum_probs=154.1

Q ss_pred             CceEEEEecCCcccccCChhhhc-cCCCCeEEccCcccc--ccCCchhhhcCcccccEEECCCCcCCccccCccCC----
Q 047927          623 SLSIFFSFSKNSLTGVIPESICN-ATNLLVLDLSYNYLS--GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPA----  695 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~----  695 (1005)
                      ..++.|.++++- .......+.. +++|+.|||++|++.  ...+..+.     .+..+.+..|.   +.+.+|.+    
T Consensus        25 ~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~-----~~~~~~~~~~~---I~~~aF~~~~~~   95 (329)
T 3sb4_A           25 NSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP-----NGKFYIYMANF---VPAYAFSNVVNG   95 (329)
T ss_dssp             HHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG-----GGCCEEECTTE---ECTTTTEEEETT
T ss_pred             CceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccccc-----ccccccccccc---cCHHHhcccccc
Confidence            445666665431 1111123444 677888888888776  21111111     12333344442   23345555    


Q ss_pred             ----CCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccC--CCCCCCC
Q 047927          696 ----NCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNIS--CPRYNVS  769 (1005)
Q Consensus       696 ----l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~~  769 (1005)
                          +++|+.|+|.+ .++.+.+.+|.+|++|+.+++++|.++.+.+..|..+.++..+.+..+.......  ....+..
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                77777777777 6666666677777777777777777776666677776666666555422100000  0111112


Q ss_pred             --------------------------CCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheeccccccc
Q 047927          770 --------------------------WPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAY  823 (1005)
Q Consensus       770 --------------------------l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  823 (1005)
                                                ..+++.+.+.++     +....+                               
T Consensus       175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-----l~~~~~-------------------------------  218 (329)
T 3sb4_A          175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-----LDNADF-------------------------------  218 (329)
T ss_dssp             SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-----CCHHHH-------------------------------
T ss_pred             ccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-----ecHHHH-------------------------------
Confidence                                      223333433332     111110                               


Q ss_pred             ccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCC-EEeCCCC
Q 047927          824 YQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIE-SLDLSMN  902 (1005)
Q Consensus       824 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~-~LdLs~N  902 (1005)
                                   ..+...+++|+.++|++|+++...+..|.++++|+.|+|++| ++..-+..|.++++|+ .+++.+ 
T Consensus       219 -------------~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          219 -------------KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             -------------HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             -------------HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence                         011124678999999999999666678999999999999998 8766677889999999 999998 


Q ss_pred             cCcccCcccccCCCCCCeEEccCCcccc
Q 047927          903 NLSGTIPAQLASLNFLSVLNLSYNHLVG  930 (1005)
Q Consensus       903 ~l~~~ip~~l~~l~~L~~L~ls~N~l~g  930 (1005)
                      +++.+-+.+|.++++|+.+++++|+++.
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            8887888999999999999999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.3e-13  Score=134.13  Aligned_cols=92  Identities=20%  Similarity=0.174  Sum_probs=85.7

Q ss_pred             ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927          844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL  923 (1005)
Q Consensus       844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  923 (1005)
                      +.++.|+|++|++++..|..|+++++|++|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            56789999999999999999999999999999999999877777899999999999999999888888999999999999


Q ss_pred             cCCcccccCCCC
Q 047927          924 SYNHLVGRIPTS  935 (1005)
Q Consensus       924 s~N~l~g~ip~~  935 (1005)
                      ++|+++|.++..
T Consensus       110 ~~N~~~c~c~~l  121 (170)
T 3g39_A          110 LNNPWDCACSDI  121 (170)
T ss_dssp             CSSCBCTTBGGG
T ss_pred             CCCCCCCCchhH
Confidence            999999987643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.2e-15  Score=153.20  Aligned_cols=83  Identities=20%  Similarity=0.184  Sum_probs=54.7

Q ss_pred             cccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCc-hhhhcCCCCCEEeCCCCcCcccCccc----------
Q 047927          843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIP-SLIGNLREIESLDLSMNNLSGTIPAQ----------  911 (1005)
Q Consensus       843 ~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~~~ip~~----------  911 (1005)
                      ++.|+.|++++|++++ +| .++.+++|++|+|++|++++..+ ..++.+++|+.|++++|.+++.+|..          
T Consensus        92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~  169 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV  169 (198)
T ss_dssp             HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred             CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence            3456667777777765 34 46667777777777777774222 35677777777777777777766653          


Q ss_pred             ccCCCCCCeEEccCCccc
Q 047927          912 LASLNFLSVLNLSYNHLV  929 (1005)
Q Consensus       912 l~~l~~L~~L~ls~N~l~  929 (1005)
                      +..+++|++||  +|.++
T Consensus       170 ~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          170 VKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHCSSCSEEC--CGGGT
T ss_pred             HHhCCCcEEEC--CcccC
Confidence            66777777776  55554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=1.9e-13  Score=134.06  Aligned_cols=134  Identities=20%  Similarity=0.188  Sum_probs=103.7

Q ss_pred             hhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCC
Q 047927          642 SICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCS  721 (1005)
Q Consensus       642 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~  721 (1005)
                      .+.++++|+.|++++|+++. +|......+  +|++|++++|.+++.  ..|..+++|++|++++|++++..+..+..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~--~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLD--QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTT--CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCC--CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            34567788888888888873 454333333  788888888888876  6788888899999999998876556668889


Q ss_pred             CCCEEECCCCcCCCCcch--hhhcCCCCcEEecCCCcCCcccCCCCC----CCCCCCccEEEccCCccc
Q 047927          722 VLEILDLGNNQFDDTFPC--WVKNASRLHVLILRSNNFFGNISCPRY----NVSWPMLQIIDLASNKFS  784 (1005)
Q Consensus       722 ~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~~~----~~~l~~L~~L~ls~N~~~  784 (1005)
                      +|++|++++|+++. +|.  .+..+++|+.|++++|++...   |..    +..+++|+.||+++|...
T Consensus        89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~---~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK---KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS---TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc---HhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999999865 454  788889999999999988642   553    778899999999988765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=3.6e-13  Score=131.32  Aligned_cols=91  Identities=20%  Similarity=0.180  Sum_probs=83.8

Q ss_pred             ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927          844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL  923 (1005)
Q Consensus       844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  923 (1005)
                      +.++.|+|++|++++.+|..|+++++|++|+|++|+|++..+..++++++|+.|||++|+|++..|..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            56789999999999999999999999999999999999866666799999999999999999877777999999999999


Q ss_pred             cCCcccccCCC
Q 047927          924 SYNHLVGRIPT  934 (1005)
Q Consensus       924 s~N~l~g~ip~  934 (1005)
                      ++|++++..+.
T Consensus       113 ~~N~~~c~~~~  123 (174)
T 2r9u_A          113 YNNPWDCECRD  123 (174)
T ss_dssp             CSSCBCTTBGG
T ss_pred             CCCCccccccc
Confidence            99999987653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=3.6e-15  Score=149.68  Aligned_cols=63  Identities=19%  Similarity=0.153  Sum_probs=50.5

Q ss_pred             hcccceEEECCCCeeeccCc-ccccCCCCCCEEECCCCcCcccCchh----------hhcCCCCCEEeCCCCcCcc
Q 047927          842 ILNIFTSIDFSRNNFEGPIP-EEMGLLQSLCALNLSHNALTGSIPSL----------IGNLREIESLDLSMNNLSG  906 (1005)
Q Consensus       842 ~~~~l~~L~Ls~N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------~~~l~~L~~LdLs~N~l~~  906 (1005)
                      .++.|+.|++++|++++..+ ..++.+++|++|++++|.+++.+|..          +..+++|+.||  +|.++.
T Consensus       113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            35678888899888885433 57889999999999999999887764          88999999998  676653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.40  E-value=6.1e-12  Score=140.01  Aligned_cols=267  Identities=11%  Similarity=0.129  Sum_probs=136.2

Q ss_pred             CCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC--CCCCCceeEE
Q 047927          454 KNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHL  531 (1005)
Q Consensus       454 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~--l~~l~~L~~L  531 (1005)
                      ..++.+.+.++ ++ .++..+|.++ +|+.+.+..+ ++.++..+|..  ..|+.+.+.. .++.++.  |..|++|+.+
T Consensus       113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~--~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN--STVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT--CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCC--CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            44555555442 22 4455555554 5666666554 55566555544  2467777765 5666654  7778888888


Q ss_pred             ECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCc
Q 047927          532 DLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT  611 (1005)
Q Consensus       532 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~  611 (1005)
                      ++.+|.++ .++...+.  ...|+.+.+..+ +..+. ..+|.+|++|+.+++..+ ++                     
T Consensus       186 ~l~~n~l~-~I~~~aF~--~~~L~~l~lp~~-l~~I~-~~aF~~~~~L~~l~l~~~-l~---------------------  238 (401)
T 4fdw_A          186 DLSKTKIT-KLPASTFV--YAGIEEVLLPVT-LKEIG-SQAFLKTSQLKTIEIPEN-VS---------------------  238 (401)
T ss_dssp             ECTTSCCS-EECTTTTT--TCCCSEEECCTT-CCEEC-TTTTTTCTTCCCEECCTT-CC---------------------
T ss_pred             ecCCCcce-EechhhEe--ecccCEEEeCCc-hheeh-hhHhhCCCCCCEEecCCC-cc---------------------
Confidence            88888776 34443332  245666666643 44332 235667777777776543 21                     


Q ss_pred             cCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccC
Q 047927          612 SSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA  691 (1005)
Q Consensus       612 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~  691 (1005)
                       .++...+.. ..|+.+.+ .+.++..-+..|.+|++|+.+++.+|.+..                     +....+.+.
T Consensus       239 -~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~---------------------~~~~~I~~~  294 (401)
T 4fdw_A          239 -TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFND---------------------DPEAMIHPY  294 (401)
T ss_dssp             -EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCC---------------------CTTCEECTT
T ss_pred             -Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccC---------------------CcccEECHH
Confidence             111222222 34455555 233443444555556666666655554430                     000123344


Q ss_pred             ccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCC-
Q 047927          692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW-  770 (1005)
Q Consensus       692 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-  770 (1005)
                      +|.++++|+.+++.+ .++.+...+|.+|++|+.++|..| ++.+.+.+|.++ +|+.+++.+|......  +..+..+ 
T Consensus       295 aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~--~~~F~~~~  369 (401)
T 4fdw_A          295 CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF--EKVWYGFP  369 (401)
T ss_dssp             TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC--CSSCCCSC
T ss_pred             HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc--cccccCCC
Confidence            455555555555552 344444455555555555555333 444444555555 5555555555443211  2223333 


Q ss_pred             CCccEEEccCCcc
Q 047927          771 PMLQIIDLASNKF  783 (1005)
Q Consensus       771 ~~L~~L~ls~N~~  783 (1005)
                      ..++.|.+..+.+
T Consensus       370 ~~l~~l~vp~~~~  382 (401)
T 4fdw_A          370 DDITVIRVPAESV  382 (401)
T ss_dssp             TTCCEEEECGGGH
T ss_pred             CCccEEEeCHHHH
Confidence            2455666655543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=6.3e-13  Score=130.39  Aligned_cols=130  Identities=15%  Similarity=0.093  Sum_probs=107.3

Q ss_pred             cCceEEEEecCCcccccCChhhhccC-CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCcc
Q 047927          622 MSLSIFFSFSKNSLTGVIPESICNAT-NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR  700 (1005)
Q Consensus       622 ~~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  700 (1005)
                      +..++.|++++|.++.. |. +..+. +|+.|++++|.+++.  ..+..++  +|++|++++|++++..+..|..+++|+
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLR--RLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCS--SCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCC--CCCEEECCCCcccccCcchhhcCCCCC
Confidence            66788888888888854 54 44444 999999999999865  5677777  899999999999987666678899999


Q ss_pred             EEeCCCCeecccCcc--cccCCCCCCEEECCCCcCCCCcch----hhhcCCCCcEEecCCCcCCc
Q 047927          701 TLDLNGNQLEGMVPK--SLANCSVLEILDLGNNQFDDTFPC----WVKNASRLHVLILRSNNFFG  759 (1005)
Q Consensus       701 ~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~  759 (1005)
                      +|++++|+++. +|.  .+..+++|+.|++++|+++. +|.    .+..+++|+.|++++|....
T Consensus        92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999974 555  88999999999999999985 455    48999999999999998643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=2e-12  Score=125.62  Aligned_cols=104  Identities=25%  Similarity=0.253  Sum_probs=56.6

Q ss_pred             CCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEEC
Q 047927          649 LLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL  728 (1005)
Q Consensus       649 L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  728 (1005)
                      .+.+++++|.++ .+|..+.  .  +|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~--~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--T--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-ccCccCC--C--CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            345666666665 3444332  2  5566666666666555555555555666666666555555555555555555555


Q ss_pred             CCCcCCCCcchhhhcCCCCcEEecCCCcC
Q 047927          729 GNNQFDDTFPCWVKNASRLHVLILRSNNF  757 (1005)
Q Consensus       729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l  757 (1005)
                      ++|++++..+..|..+++|++|+|++|++
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            55555554444444444444444444444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=4.6e-12  Score=123.43  Aligned_cols=104  Identities=19%  Similarity=0.224  Sum_probs=62.3

Q ss_pred             CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECC
Q 047927          650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG  729 (1005)
Q Consensus       650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  729 (1005)
                      +.+++++|.++ .+|..+.  .  +|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--T--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCCC-ccCCCcC--C--CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            56677777665 4555443  2  56666666666666666666666666666666666665555555666666666666


Q ss_pred             CCcCCCCcchhhhcCCCCcEEecCCCcCC
Q 047927          730 NNQFDDTFPCWVKNASRLHVLILRSNNFF  758 (1005)
Q Consensus       730 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  758 (1005)
                      +|++++..+..|..+++|++|+|++|++.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            66666554444555555555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.32  E-value=2.7e-11  Score=134.77  Aligned_cols=241  Identities=11%  Similarity=0.083  Sum_probs=120.8

Q ss_pred             ceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEe
Q 047927          624 LSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLD  703 (1005)
Q Consensus       624 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  703 (1005)
                      .|+.+.+.++ ++..-..+|.++ +|+.+++.+ .+....+.+|.++.  +|+.+++.+|+++.+...+|. .++|+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~--~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~  209 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY--NLKKADLSKTKITKLPASTFV-YAGIEEVL  209 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCT--TCCEEECTTSCCSEECTTTTT-TCCCSEEE
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcc--cCCeeecCCCcceEechhhEe-ecccCEEE
Confidence            3455555443 443444445553 466666654 44444445555555  566666666666655555555 35666666


Q ss_pred             CCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcc
Q 047927          704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKF  783 (1005)
Q Consensus       704 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~  783 (1005)
                      +..+ ++.+...+|.+|++|+.+++.+| ++.+....|.+ .+|+.+.+. +.+...-  ...+..+++|+.+++.+|.+
T Consensus       210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~--~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIA--SRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEEC--TTTTTTCTTCCEEEEESSCC
T ss_pred             eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEC--hhHhhCCCCCCEEEeCCccc
Confidence            6533 55455556666666666666553 44444445555 456666552 2222111  33445555555555555544


Q ss_pred             cc----cCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeecc
Q 047927          784 SG----RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGP  859 (1005)
Q Consensus       784 ~~----~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~  859 (1005)
                      ..    .++...                                                +..+++|+.++|.+ +++..
T Consensus       284 ~~~~~~~I~~~a------------------------------------------------F~~c~~L~~l~l~~-~i~~I  314 (401)
T 4fdw_A          284 NDDPEAMIHPYC------------------------------------------------LEGCPKLARFEIPE-SIRIL  314 (401)
T ss_dssp             CCCTTCEECTTT------------------------------------------------TTTCTTCCEECCCT-TCCEE
T ss_pred             cCCcccEECHHH------------------------------------------------hhCCccCCeEEeCC-ceEEE
Confidence            31    011100                                                11344555555552 24433


Q ss_pred             CcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCC-CCCeEEccCCc
Q 047927          860 IPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN-FLSVLNLSYNH  927 (1005)
Q Consensus       860 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~  927 (1005)
                      -...|.++++|+.++|..| ++..-+..|.++ +|+.+++++|.+....+..|.+++ .++.+.+..|.
T Consensus       315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            3445555666666666433 443334455555 666666666655554445555553 45555555444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.26  E-value=1.4e-10  Score=129.90  Aligned_cols=306  Identities=12%  Similarity=0.020  Sum_probs=160.9

Q ss_pred             CCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCC
Q 047927          205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQN  284 (1005)
Q Consensus       205 ~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~  284 (1005)
                      ...+|.++++|+.+++..+ +...-...|..+.+|+.+.+..+ +......+|..+..++.......  .......|.++
T Consensus        86 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c  161 (394)
T 4fs7_A           86 GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATC  161 (394)
T ss_dssp             CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTC
T ss_pred             chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccc--cccchhhhccc
Confidence            3445666666666666543 32222345556666665555433 22233334444443333322222  22333456666


Q ss_pred             CCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECC
Q 047927          285 LSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLS  364 (1005)
Q Consensus       285 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~  364 (1005)
                      .+|+.+.+..+. .......|.++.+|+.+.+..+ +.......+..+..|+.+.+..+... .........+|+.+.+.
T Consensus       162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip  238 (394)
T 4fs7_A          162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIP  238 (394)
T ss_dssp             TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEEC
T ss_pred             CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEEC
Confidence            777777775442 3344556677777777777654 33333445666777777666554322 11222333467777665


Q ss_pred             CCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCC
Q 047927          365 YNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEG  444 (1005)
Q Consensus       365 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~  444 (1005)
                      ... + .+....+..+..++.+.+..+... .....+..+..++.+......    ++...+..+.+|+.+.+.++ ++.
T Consensus       239 ~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~  310 (394)
T 4fs7_A          239 DSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKF  310 (394)
T ss_dssp             TTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCE
T ss_pred             CCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-cce
Confidence            432 1 233334667777777777665433 344456667777766665442    22333344556666666543 443


Q ss_pred             CCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC-CC
Q 047927          445 PIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LR  523 (1005)
Q Consensus       445 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~  523 (1005)
                      ....+|.++++|+.+++.++ ++ .+...+|.++.+|+.+.+..+ ++.++..++.. +.+|+.+++..+ ++.+.. +.
T Consensus       311 I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~-C~~L~~i~lp~~-~~~~~~~F~  385 (394)
T 4fs7_A          311 IGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG-CINLKKVELPKR-LEQYRYDFE  385 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTT-CTTCCEEEEEGG-GGGGGGGBC
T ss_pred             echhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhC-CCCCCEEEECCC-CEEhhheec
Confidence            44556667777777777543 33 566666777777777777655 55555544322 233555555432 222222 44


Q ss_pred             CCCceeE
Q 047927          524 KQTKLYH  530 (1005)
Q Consensus       524 ~l~~L~~  530 (1005)
                      ++++|+.
T Consensus       386 ~c~~L~~  392 (394)
T 4fs7_A          386 DTTKFKW  392 (394)
T ss_dssp             TTCEEEE
T ss_pred             CCCCCcE
Confidence            4555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=6.2e-13  Score=146.59  Aligned_cols=88  Identities=16%  Similarity=0.135  Sum_probs=55.5

Q ss_pred             cccceEEECCCCeeecc----CcccccCCCCCCEEECCCCcCcc----cCchhhhcCCCCCEEeCCCCcCcccCcccccC
Q 047927          843 LNIFTSIDFSRNNFEGP----IPEEMGLLQSLCALNLSHNALTG----SIPSLIGNLREIESLDLSMNNLSGTIPAQLAS  914 (1005)
Q Consensus       843 ~~~l~~L~Ls~N~l~g~----ip~~~~~l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~  914 (1005)
                      .+.|++|||++|.+++.    +++.+...++|++|||++|.|+.    .++..+...++|++|||++|.|++.-...+..
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            45677777777777642    35566677788888888888875    34445556688888888888887665555544


Q ss_pred             CCC-----CCeEE--ccCCcccc
Q 047927          915 LNF-----LSVLN--LSYNHLVG  930 (1005)
Q Consensus       915 l~~-----L~~L~--ls~N~l~g  930 (1005)
                      +..     |+.+.  +..|.++.
T Consensus       262 ~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          262 LGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             CC------CEEECCCC----CHH
T ss_pred             HhcCCCccchhhHhhhcCCccCH
Confidence            321     55666  66666653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.22  E-value=2.7e-10  Score=127.53  Aligned_cols=66  Identities=8%  Similarity=-0.013  Sum_probs=36.3

Q ss_pred             CCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEee
Q 047927          249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEF  316 (1005)
Q Consensus       249 l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  316 (1005)
                      ++.....+|.+|.+|+.+.+..+ +...+..+|.++.+|+.+++..+ ++.+....|.++.+|+.+.+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~  124 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL  124 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence            34344455667777777777643 44444455666666666666533 33333445555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=1.1e-12  Score=144.48  Aligned_cols=89  Identities=20%  Similarity=0.299  Sum_probs=73.2

Q ss_pred             cccceEEECCCCeeec----cCcccccCCCCCCEEECCCCcCccc----CchhhhcCCCCCEEeCCCCcCccc----Ccc
Q 047927          843 LNIFTSIDFSRNNFEG----PIPEEMGLLQSLCALNLSHNALTGS----IPSLIGNLREIESLDLSMNNLSGT----IPA  910 (1005)
Q Consensus       843 ~~~l~~L~Ls~N~l~g----~ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~~~----ip~  910 (1005)
                      .+.|+.|+|++|.+++    .++..+...++|++|||++|.|+..    ++..+...++|+.|||++|.|++.    ++.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            4568889999998875    3556668899999999999999863    466778889999999999999864    455


Q ss_pred             cccCCCCCCeEEccCCccccc
Q 047927          911 QLASLNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       911 ~l~~l~~L~~L~ls~N~l~g~  931 (1005)
                      .+...+.|++|||++|+|+..
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHhCCCCCEEeccCCCCCHH
Confidence            566779999999999998754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=3.3e-10  Score=124.68  Aligned_cols=102  Identities=21%  Similarity=0.183  Sum_probs=54.6

Q ss_pred             eEEccCc-cccccCCchhhhcCcccccEEECCC-CcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEEC
Q 047927          651 VLDLSYN-YLSGMIPTCLINMSDSQLGVLNLRR-NNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL  728 (1005)
Q Consensus       651 ~L~Ls~N-~l~~~~p~~~~~l~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L  728 (1005)
                      .++.+++ .++ .+|. +..+.  +|+.|+|++ |++++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~--~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAE--NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCS--CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCC--CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            3466665 555 3555 55544  555666654 5555555555555555555555555555555555555555555555


Q ss_pred             CCCcCCCCcchhhhcCCCCcEEecCCCcC
Q 047927          729 GNNQFDDTFPCWVKNASRLHVLILRSNNF  757 (1005)
Q Consensus       729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l  757 (1005)
                      ++|+|++..+..|..++ |+.|+|.+|++
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence            55555544444443333 44444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=3.5e-10  Score=124.53  Aligned_cols=105  Identities=22%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             EEEecCC-cccccCChhhhccCCCCeEEccC-ccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeC
Q 047927          627 FFSFSKN-SLTGVIPESICNATNLLVLDLSY-NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDL  704 (1005)
Q Consensus       627 ~L~l~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  704 (1005)
                      .++++++ .+++ +|. +..+++|+.|+|++ |++++..+..|..+.  +|+.|+|++|+|++..|..|.++++|++|+|
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLG--ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC--CCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc--CCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            3566666 6664 566 77777777777775 777766667777776  7777777777777777777777777777777


Q ss_pred             CCCeecccCcccccCCCCCCEEECCCCcCCCC
Q 047927          705 NGNQLEGMVPKSLANCSVLEILDLGNNQFDDT  736 (1005)
Q Consensus       705 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  736 (1005)
                      ++|++++..+..|..++ |+.|+|++|++...
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            77777766666666555 77777777777643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.02  E-value=1.6e-08  Score=113.01  Aligned_cols=133  Identities=13%  Similarity=0.178  Sum_probs=84.3

Q ss_pred             ChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccC
Q 047927          640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLAN  719 (1005)
Q Consensus       640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  719 (1005)
                      ..+|.++..|+.+.+.++..+ .....|.++.  .|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~--~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCP--ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT--TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             cceeeecccccEEecccccce-ecCccccccc--ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            345667777777777655433 4455666666  77777775 4566666677888888888888754 55566678888


Q ss_pred             CCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcc
Q 047927          720 CSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKF  783 (1005)
Q Consensus       720 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~  783 (1005)
                      |++|+.+.+..+ ++.+....|.++++|+.+++.++....     ..+.....|+.+++..|.+
T Consensus       333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred             CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence            888888888654 666667778888888888888775431     2344556677776655543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.84  E-value=1.1e-07  Score=106.15  Aligned_cols=287  Identities=13%  Similarity=0.125  Sum_probs=152.4

Q ss_pred             CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCC---CCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCE
Q 047927          189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND---LYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLET  265 (1005)
Q Consensus       189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~---~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  265 (1005)
                      ..|+.+.+.. .++.....+|.++++|+.+.+..+.   +...-..+|..+.+|+.+.+..+ ++......+..+.+|+.
T Consensus        64 ~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           64 YVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             SCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred             CcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence            3578888764 3555566778888888888876553   33333456777777877766544 44344556777888888


Q ss_pred             EeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcC
Q 047927          266 LDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHF  345 (1005)
Q Consensus       266 L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l  345 (1005)
                      +.+..+ +.......|..+..|+.+.+..+ ++.....+|.. .+|+.+.+...- .......+..+.+++.........
T Consensus       142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~  217 (394)
T 4gt6_A          142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESY  217 (394)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSS
T ss_pred             ccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccceeccccccc
Confidence            888654 34445556777788888887654 33344445543 567777776532 223344566777777776655433


Q ss_pred             ccCCCccc--------------ccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEe
Q 047927          346 SGPIPSLH--------------MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLL  411 (1005)
Q Consensus       346 ~~~~~~~~--------------~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  411 (1005)
                      ........              ....+..+.+... ++ .+....|..+..|+.+.+..+... .....+.+++.|+.+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~  294 (394)
T 4gt6_A          218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIE  294 (394)
T ss_dssp             CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEE
T ss_pred             ccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCccccccccccccc
Confidence            21111100              0112233333221 11 122333566666666666544332 3334455666666666


Q ss_pred             CcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCC
Q 047927          412 LADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYN  489 (1005)
Q Consensus       412 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n  489 (1005)
                      +... +. .+....+..+.+|+.+++.++ ++.....+|.++++|+.+.+..+ ++ .+...+|.++++|+.+++.++
T Consensus       295 l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          295 FSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCc-cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence            6432 11 223333334445555555432 33333444555555555555433 22 344455555555555555444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.69  E-value=1.4e-08  Score=110.66  Aligned_cols=59  Identities=19%  Similarity=0.355  Sum_probs=34.3

Q ss_pred             CCCCCEEECCCCcCccc----CchhhhcCCCCCEEeCCCCcCcccCcccccC-CCCCCeEEccCCc
Q 047927          867 LQSLCALNLSHNALTGS----IPSLIGNLREIESLDLSMNNLSGTIPAQLAS-LNFLSVLNLSYNH  927 (1005)
Q Consensus       867 l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-l~~L~~L~ls~N~  927 (1005)
                      +++|++||||.|.+++.    ++..+..+++|+.|||++|.++...-..+.. +  ...+|+++|+
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            45666666666666653    3444455667777777777766443333332 2  3456777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=2.1e-08  Score=109.14  Aligned_cols=142  Identities=14%  Similarity=0.211  Sum_probs=94.4

Q ss_pred             cchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhhee
Q 047927          737 FPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRF  816 (1005)
Q Consensus       737 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~  816 (1005)
                      ++.++..+++|+.|.|++|.-   +..+. + .+++|+.|++..+.+..    .....+.                    
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~---l~l~~-~-~~~~L~~L~L~~~~l~~----~~l~~l~--------------------  214 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNN---LSIGK-K-PRPNLKSLEIISGGLPD----SVVEDIL--------------------  214 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBT---CBCCS-C-BCTTCSEEEEECSBCCH----HHHHHHH--------------------
T ss_pred             HHHHHhcCCCCcEEEEeCCCC---ceecc-c-cCCCCcEEEEecCCCCh----HHHHHHH--------------------
Confidence            446667778888888887731   11133 2 37888888888776542    1111100                    


Q ss_pred             cccccccccccEEEEEcchHHHHHHhcccceEEECCC--Ceeecc-----Ccccc--cCCCCCCEEECCCCcCcccCchh
Q 047927          817 LNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSR--NNFEGP-----IPEEM--GLLQSLCALNLSHNALTGSIPSL  887 (1005)
Q Consensus       817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~--N~l~g~-----ip~~~--~~l~~L~~L~Ls~N~l~g~ip~~  887 (1005)
                                             ...+++|+.|+|+.  |...|.     +...+  +.+++|++|+|++|.++...+..
T Consensus       215 -----------------------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          215 -----------------------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             -----------------------HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             -----------------------HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence                                   01356778888753  221111     11222  35789999999999998766555


Q ss_pred             hh---cCCCCCEEeCCCCcCccc----CcccccCCCCCCeEEccCCcccc
Q 047927          888 IG---NLREIESLDLSMNNLSGT----IPAQLASLNFLSVLNLSYNHLVG  930 (1005)
Q Consensus       888 ~~---~l~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~ls~N~l~g  930 (1005)
                      +.   .+++|+.|||+.|.+++.    ++..+..++.|+.|++++|.++.
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            54   578999999999999875    45555678999999999998864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.57  E-value=3.1e-06  Score=93.95  Aligned_cols=284  Identities=12%  Similarity=0.090  Sum_probs=128.2

Q ss_pred             CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927          189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL  268 (1005)
Q Consensus       189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  268 (1005)
                      .+|+.+.+.. .++.....+|.++.+|+.+.+..+ +...-..+|.++ +|+.+.+..+ ++.....++.. .+|+.+.+
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l  120 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF  120 (379)
T ss_dssp             GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred             cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence            3444444432 233334456777777777777543 333333456655 5666665433 33222233333 36777777


Q ss_pred             CCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCC------------CCCccCCCCCCCc
Q 047927          269 SYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNG------------PIPTSMSDLSQLV  336 (1005)
Q Consensus       269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~------------~~~~~l~~l~~L~  336 (1005)
                      ..+ +.......|... +++...+..+ ++......+..+..++.+.+.......            .....+.....+.
T Consensus       121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
T 4h09_A          121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT  197 (379)
T ss_dssp             CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred             CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence            654 222233333333 3444444332 233334455666666666554432210            1111233334444


Q ss_pred             EEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcc
Q 047927          337 YLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ  416 (1005)
Q Consensus       337 ~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  416 (1005)
                      .+.+...........+....+|+.+.+..+- . .+....+..+..|+.+.+..+ ++..-...+.++..|+.+.+..+ 
T Consensus       198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-  273 (379)
T 4h09_A          198 EFTIPSTVKTVTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-  273 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred             ccccccceeEEeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence            4444332221111222233355555554331 1 233333555666666666544 33223344555556666655432 


Q ss_pred             cccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEecc
Q 047927          417 FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLS  487 (1005)
Q Consensus       417 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~  487 (1005)
                      + ..+....+..+.+|+.+.+.++.++......|.++.+|+.+.+..+ ++ .+...+|.++.+|+.+.+.
T Consensus       274 i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          274 V-KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             C-SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             c-eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence            1 1122223333444555555544444444445555555555555433 22 3444455555555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.54  E-value=7.1e-06  Score=91.03  Aligned_cols=87  Identities=15%  Similarity=0.161  Sum_probs=44.3

Q ss_pred             ChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccC
Q 047927          640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLAN  719 (1005)
Q Consensus       640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  719 (1005)
                      ...|.++.+|+.+.+..+ +.......|.++.  +|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.+
T Consensus       256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~--~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  331 (379)
T 4h09_A          256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS--NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN  331 (379)
T ss_dssp             TTTTTTCTTCCEEEECCC-CSEECTTTTTTCT--TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             ccccceeehhcccccccc-ceecccccccccc--ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC
Confidence            344555555555555433 3323333444444  5555555555555555555555555555555433 44344455555


Q ss_pred             CCCCCEEECCC
Q 047927          720 CSVLEILDLGN  730 (1005)
Q Consensus       720 l~~L~~L~Ls~  730 (1005)
                      |++|+.+.+..
T Consensus       332 C~~L~~i~ip~  342 (379)
T 4h09_A          332 CKALSTISYPK  342 (379)
T ss_dssp             CTTCCCCCCCT
T ss_pred             CCCCCEEEECC
Confidence            55555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=9.4e-08  Score=98.28  Aligned_cols=84  Identities=26%  Similarity=0.298  Sum_probs=60.5

Q ss_pred             EECCCCe---eeccCcccccCCCCCCEEECCCCcCcc--cCchhhhcCCCCCEEeCCCCcCcccCcccccCCC--CCCeE
Q 047927          849 IDFSRNN---FEGPIPEEMGLLQSLCALNLSHNALTG--SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN--FLSVL  921 (1005)
Q Consensus       849 L~Ls~N~---l~g~ip~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L  921 (1005)
                      ++++.|+   +.+.++....++++|+.|+||+|+|++  .+|..++.+++|+.|||++|+|++.  ..+..+.  .|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            5666773   333333333567888888888888887  5667778888888888888888875  3344444  88888


Q ss_pred             EccCCcccccCCC
Q 047927          922 NLSYNHLVGRIPT  934 (1005)
Q Consensus       922 ~ls~N~l~g~ip~  934 (1005)
                      +|++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            8888888887774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.36  E-value=2.5e-07  Score=95.10  Aligned_cols=80  Identities=23%  Similarity=0.236  Sum_probs=68.8

Q ss_pred             HhcccceEEECCCCeeec--cCcccccCCCCCCEEECCCCcCcccCchhhhcCC--CCCEEeCCCCcCcccCcc------
Q 047927          841 KILNIFTSIDFSRNNFEG--PIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLR--EIESLDLSMNNLSGTIPA------  910 (1005)
Q Consensus       841 ~~~~~l~~L~Ls~N~l~g--~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~--~L~~LdLs~N~l~~~ip~------  910 (1005)
                      ..++.|+.|+||+|+|++  .+|..++.+++|+.|||++|+|++.  ..+..++  +|+.|+|++|.+++.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            467899999999999998  6678888999999999999999975  4466666  999999999999988773      


Q ss_pred             -cccCCCCCCeEE
Q 047927          911 -QLASLNFLSVLN  922 (1005)
Q Consensus       911 -~l~~l~~L~~L~  922 (1005)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             467888888886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=8.7e-08  Score=93.99  Aligned_cols=122  Identities=11%  Similarity=0.015  Sum_probs=57.0

Q ss_pred             ccccccccceeecCCc-cCCCC---CCCCcccCCCCCcEEEcccCCCcCC----CcccccCCCCCcEEeCCCcccccCcc
Q 047927           75 SLFSLKYLQSLNLAFN-MFNAT---EIPSGLGNLTNLTTLNLSNAGFAGQ----IPIQVSGMTRLVTLDLSGMYFVRAPL  146 (1005)
Q Consensus        75 ~l~~l~~L~~L~Ls~~-~~~~~---~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~~l~~l~~L~~L~ls~n~~~~~~~  146 (1005)
                      .+...+.|++|+|++| .+...   .+.+.+...++|++|+|++|.+.+.    +...+...+.|++|++++|.+.....
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3444556666666665 55331   1223344455666666666655432    22233344555556655555433211


Q ss_pred             ccCCCChhhhhhcCccCceeec--CCccCCCchhhHHHHHhccCCCccEEEccCCC
Q 047927          147 KLENPNLSGLLQNLAELRELYL--DGVNISAPGIEWCQALSSLVPKLQVLSLSGCF  200 (1005)
Q Consensus       147 ~~~~~~~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~  200 (1005)
                          ..+...+...++|++|++  ++|.+++.+...+.......++|++|++++|.
T Consensus       111 ----~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          111 ----LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             ----HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ----HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                112333444555555555  45555544444433332222444444444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.25  E-value=3.4e-07  Score=89.71  Aligned_cols=15  Identities=13%  Similarity=0.233  Sum_probs=7.7

Q ss_pred             ccCCCCCcEEeCCCc
Q 047927          125 VSGMTRLVTLDLSGM  139 (1005)
Q Consensus       125 l~~l~~L~~L~ls~n  139 (1005)
                      +...+.|++|++++|
T Consensus        32 l~~~~~L~~L~L~~n   46 (185)
T 1io0_A           32 QNNDPDLEEVNLNNI   46 (185)
T ss_dssp             HTTCTTCCEEECTTC
T ss_pred             HhcCCCCCEEEecCC
Confidence            344555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=8.1e-06  Score=77.40  Aligned_cols=84  Identities=11%  Similarity=0.072  Sum_probs=44.5

Q ss_pred             CCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCC-CCCCCCCcccCC----CCCcEEEccccc-ccccCchhhccCCC
Q 047927          237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE-LLQGSLPDFHQN----LSLETLILSATN-FSGILPDSIKNLKN  310 (1005)
Q Consensus       237 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~~----~~L~~L~L~~n~-l~~~~p~~l~~l~~  310 (1005)
                      .+|++|++++|.+++..-..+..+++|++|+|++|. +++..+..+..+    ++|++|+|++|. ++...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356677777766665555556666666666666664 333233333332    245555555543 44333334445555


Q ss_pred             CCEEeecCCc
Q 047927          311 LSRVEFYLCN  320 (1005)
Q Consensus       311 L~~L~l~~n~  320 (1005)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            5555555553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.72  E-value=7.2e-06  Score=77.77  Aligned_cols=36  Identities=6%  Similarity=0.082  Sum_probs=24.8

Q ss_pred             CCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcc
Q 047927          105 TNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMY  140 (1005)
Q Consensus       105 ~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~  140 (1005)
                      .+|++||+++|.++..--..+.++++|++|+|++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            567777777777665544556677777777777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.01  E-value=0.00036  Score=67.48  Aligned_cols=46  Identities=15%  Similarity=0.225  Sum_probs=21.2

Q ss_pred             hhcCccCceeecCCc-cCCCchhhHHHHHhccCCCccEEEccCCCCC
Q 047927          157 LQNLAELRELYLDGV-NISAPGIEWCQALSSLVPKLQVLSLSGCFLS  202 (1005)
Q Consensus       157 l~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~  202 (1005)
                      +.+-+.|++|+++++ .+.+.+...+......-..|+.|+|++|.+.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            344455555555553 4544444433333222245555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.01  E-value=0.00083  Score=60.70  Aligned_cols=58  Identities=26%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             EEECCCCcCc-ccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927          872 ALNLSHNALT-GSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       872 ~L~Ls~N~l~-g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~  931 (1005)
                      .+|.++++++ ..+|..+.  ++|+.|||++|+|+...+..|..+++|++|+|++|++.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd   70 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD   70 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence            5667777765 34554332  3577888888888876667778888888888888888764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.93  E-value=0.00056  Score=66.12  Aligned_cols=91  Identities=11%  Similarity=0.134  Sum_probs=47.4

Q ss_pred             CCCCcEEEcccC-CCcCC----CcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchh
Q 047927          104 LTNLTTLNLSNA-GFAGQ----IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGI  178 (1005)
Q Consensus       104 l~~L~~L~Ls~n-~~~~~----lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  178 (1005)
                      -+.|++|+|+++ .+...    +-..+..-+.|++|+|++|.+.+..    ...+...+..-+.|++|+|++|.|++.+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g----a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE----ARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH----HTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH----HHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            345555555553 43221    2233444455666666666554322    22345556666667777777777666665


Q ss_pred             hHHHHHhccCCCccEEEccC
Q 047927          179 EWCQALSSLVPKLQVLSLSG  198 (1005)
Q Consensus       179 ~~~~~l~~l~~~L~~L~L~~  198 (1005)
                      ..+.........|++|+|++
T Consensus       116 ~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHhhCCceeEEECCC
Confidence            55544433334455555553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.20  E-value=0.0076  Score=54.31  Aligned_cols=37  Identities=30%  Similarity=0.434  Sum_probs=17.7

Q ss_pred             CccEEeCCCCeecccCcccccCCCCCCEEECCCCcCC
Q 047927          698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD  734 (1005)
Q Consensus       698 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  734 (1005)
                      +|++|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3444455555544444444444445555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1005
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	6e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.6 bits (213), Expect = 2e-18
 Identities = 77/401 (19%), Positives = 139/401 (34%), Gaps = 31/401 (7%)

Query: 291 ILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP 350
           I   T  + I  D+   L    +      N    +  S +DL Q+  L          I 
Sbjct: 6   ITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS-ID 60

Query: 351 SLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHL 410
            +    NL  ++ S N  T         +L+++   +    ++      +      + + 
Sbjct: 61  GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 411 LLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPI--------PLSFFELKNLKILLLS 462
            + D     ++T ++    S     D+S  +    +              L NL  L   
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 463 SNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNL 522
                   ++  + +L NL  L  + N+++     +       L  LSL   +L  I  L
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQIS---DITPLGILTNLDELSLNGNQLKDIGTL 237

Query: 523 RKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVL 582
              T L  LDL++NQIS   P             L L  N + ++     ++ LT+L + 
Sbjct: 238 ASLTNLTDLDLANNQISNLAPLSGLT----KLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 583 DLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPES 642
           +     I            Y+    NN +   P  + S   L   F F+ N ++     S
Sbjct: 294 ENQLEDISPISNLKNLT--YLTLYFNNISDISP--VSSLTKLQRLF-FANNKVSD--VSS 346

Query: 643 ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRN 683
           + N TN+  L   +N +S + P  L N+  +++  L L   
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANL--TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.1 bits (209), Expect = 5e-18
 Identities = 69/389 (17%), Positives = 122/389 (31%), Gaps = 55/389 (14%)

Query: 206 DPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLET 265
           D +L+      + + ++ D  S       D   +T+L     G+     + +  L  L  
Sbjct: 18  DTALAEKMKTVLGKTNVTDTVS-----QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQ 70

Query: 266 LDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPI 325
           ++ S N+L    +        L  ++++    + I P +         +         P+
Sbjct: 71  INFSNNQL--TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128

Query: 326 PTSMSDLSQLVYL-------------DMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGI 372
               +     +                +    F   +  L    NL  L+          
Sbjct: 129 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 188

Query: 373 SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLL 432
                 +L NL  +  ++N +    P  +     +  L L  NQ        + AS + L
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI---GTLASLTNL 243

Query: 433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQ---------------- 476
             LDL++N +    PLS   L  L  L L +N+      L  +                 
Sbjct: 244 TDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 301

Query: 477 ---RLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDL 533
               L+NL  L L +N ++     S       L  L  A+ K+S + +L   T +  L  
Sbjct: 302 PISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSA 358

Query: 534 SDNQISGEIPNWLWKIGKDSFNHLNLSHN 562
             NQIS   P             L L+  
Sbjct: 359 GHNQISDLTPLANLT----RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.7 bits (208), Expect = 6e-18
 Identities = 76/372 (20%), Positives = 123/372 (33%), Gaps = 48/372 (12%)

Query: 70  IDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMT 129
           + ++ S   L  + +L           I  G+  L NLT +N SN       P+    +T
Sbjct: 34  VTDTVSQTDLDQVTTLQADRL--GIKSI-DGVEYLNNLTQINFSNNQLTDITPL--KNLT 88

Query: 130 RLVTLDLSGMYFVRAPLKLENPNLSGLLQ-------------------------NLAELR 164
           +LV + ++              NL+GL                            ++++ 
Sbjct: 89  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 148

Query: 165 ELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND 224
            L                 L  L     +  L            L+ L +L  +    N 
Sbjct: 149 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 208

Query: 225 LYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQN 284
           +    P  +   +NL  L L+   L       +  L  L  LDL+ N++   +L      
Sbjct: 209 ISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI--SNLAPLSGL 262

Query: 285 LSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGP-IPTSMSDLSQLVYLDMSFN 343
             L  L L A   S I P     L  L+ +     N N     + +S+L  L YL + FN
Sbjct: 263 TKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 344 HFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE 403
           + S   P +     L  L  + N  +  +SS+    L N+  +   HN +    P  L  
Sbjct: 318 NISDISP-VSSLTKLQRLFFANNKVS-DVSSLA--NLTNINWLSAGHNQISDLTP--LAN 371

Query: 404 LPMVQHLLLADN 415
           L  +  L L D 
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 83.1 bits (204), Expect = 2e-17
 Identities = 71/407 (17%), Positives = 132/407 (32%), Gaps = 42/407 (10%)

Query: 520 PNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSL 579
             L ++ K     L    ++  +     +   D    L      + S++    +  L +L
Sbjct: 19  TALAEKMKT---VLGKTNVTDTVS----QTDLDQVTTLQADRLGIKSID---GVEYLNNL 68

Query: 580 SVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVI 639
           + ++  +NQ+   I PL            N T  + + + +     I    +  +LTG+ 
Sbjct: 69  TQINFSNNQLTD-ITPLK-----------NLTKLVDILMNNNQIADITPLANLTNLTGLT 116

Query: 640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSL 699
             +        + +L+      +    + ++S         + +  N        AN + 
Sbjct: 117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTT 176

Query: 700 RTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFG 759
                + +  +      LA  + LE L   NNQ  D  P      + L  L L  N    
Sbjct: 177 LERL-DISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD 233

Query: 760 NISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNL 819
             +      S   L  +DLA+N+ S   P   L  L  + +   +  +         L  
Sbjct: 234 IGTLA----SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTN 289

Query: 820 SQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNA 879
            +               +     L   T +    NN     P  +  L  L  L  ++N 
Sbjct: 290 LELNENQLED-------ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNK 340

Query: 880 LTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN 926
           ++    S + NL  I  L    N +S   P  LA+L  ++ L L+  
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.3 bits (194), Expect = 4e-16
 Identities = 69/405 (17%), Positives = 122/405 (30%), Gaps = 62/405 (15%)

Query: 146 LKLENPNLSGLLQ--NLAELRELYLDGVNI-SAPGIEWCQALSSLVPKLQVLSLSGCFLS 202
             L   N++  +   +L ++  L  D + I S  G+E+          L  ++ S   L+
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL-------NNLTQINFSNNQLT 79

Query: 203 GPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKIL---- 258
                 L NL  L  I ++ N +    P          +L+ +                 
Sbjct: 80  DI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 259 -----QLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSR 313
                 +  +  L    +               L  L             S  ++     
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 314 VEFYLCNFNGPI--PTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGG 371
               L   N  I   T +  L+ L  L ++ N     I +L    NL  LDL+ N  +  
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISN- 255

Query: 372 ISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSL 431
                   L  L  + L  N +    P     L  +  L   +   +        ++   
Sbjct: 256 --LAPLSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKN 308

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRL 491
           L  L L  NN+    P+S   L  L+ L  ++NK      + ++  L N+  L   +N+ 
Sbjct: 309 LTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQ- 362

Query: 492 AVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDN 536
                                   +S +  L   T++  L L+D 
Sbjct: 363 ------------------------ISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.6 bits (187), Expect = 3e-15
 Identities = 65/370 (17%), Positives = 123/370 (33%), Gaps = 62/370 (16%)

Query: 435 LDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA-- 492
             L   N+   +  +  +L  +  L        G   +D ++ L NL +++ S N+L   
Sbjct: 27  TVLGKTNVTDTVSQT--DLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDI 81

Query: 493 ---------VVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
                    V    +      +    +L +     + N +        +L++        
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 544 NWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP-PNAAY 602
           N +  I   S        +    +     +++LT+L  LD+ SN++          N   
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 603 VDYSGNNFTSSIPV-----------------DIGSFMSLS--IFFSFSKNSLTGVIPESI 643
           +  + N  +   P+                 DIG+  SL+       + N ++ + P  +
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 259

Query: 644 CNATNLLVLDLSYNYLSGMIPTCLINMSDSQ------------------LGVLNLRRNNL 685
              T L  L L  N +S + P   +    +                   L  L L  NN+
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 686 NGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNAS 745
           +        +   L+ L    N++      SLAN + +  L  G+NQ  D  P  + N +
Sbjct: 320 SDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT 373

Query: 746 RLHVLILRSN 755
           R+  L L   
Sbjct: 374 RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 61/393 (15%), Positives = 130/393 (33%), Gaps = 60/393 (15%)

Query: 103 NLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAE 162
            L       L        +    + + ++ TL             L   ++ G+ + L  
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADR---------LGIKSIDGV-EYLNN 67

Query: 163 LRELYLDGVNISA-PGIEWCQALSSLVP-----------------------------KLQ 192
           L ++      ++    ++    L  ++                                 
Sbjct: 68  LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 193 VLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYL-SSCGLHG 251
           + +L+          ++S++ +LS +       +      L   +NLT+L          
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187

Query: 252 AFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNL 311
           +    + +L  LE+L  + N++    +       +L+ L L+      I   ++ +L NL
Sbjct: 188 SDISVLAKLTNLESLIATNNQI--SDITPLGILTNLDELSLNGNQLKDI--GTLASLTNL 243

Query: 312 SRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGG 371
           + ++      +   P  +S L++L  L +  N  S   P       L  L          
Sbjct: 244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQL 297

Query: 372 ISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSL 431
                   L NL ++ L  NN+    P  +  L  +Q L  A+N+    V+ ++N ++  
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTN-- 352

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSN 464
           ++ L    N +    PL+   L  +  L L+  
Sbjct: 353 INWLSAGHNQISDLTPLA--NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.3 bits (163), Expect = 2e-12
 Identities = 64/384 (16%), Positives = 116/384 (30%), Gaps = 55/384 (14%)

Query: 506 LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP----------NWLWKIGKDSFN 555
           +TTL      + +I  +     L  ++ S+NQ++   P                  D   
Sbjct: 46  VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP 105

Query: 556 HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIP 615
             NL++   ++L            ++ +L+  ++           + +         +  
Sbjct: 106 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV 165

Query: 616 VDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQL 675
            D+    +L+       +S        +   TNL  L  + N +S + P  +     + L
Sbjct: 166 TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI----LTNL 221

Query: 676 GVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD 735
             L+L  N L      T  +  +L  LDL  NQ+  + P  L+  + L  L LG NQ  +
Sbjct: 222 DELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 277

Query: 736 TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL 795
             P     A                +       +   L  + L  N  S   P   L  L
Sbjct: 278 ISPLAGLTALTNL------ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL 331

Query: 796 EAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNN 855
           +                    L  +           +  +   LA + NI   +    N 
Sbjct: 332 Q-------------------RLFFANNK--------VSDVSS-LANLTNI-NWLSAGHNQ 362

Query: 856 FEGPIPEEMGLLQSLCALNLSHNA 879
                P  +  L  +  L L+  A
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 1e-06
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 9/126 (7%)

Query: 13  QSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDN 72
             L L                +   + N+              +  L L   +IS    +
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS----D 321

Query: 73  SSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLV 132
            S + SL  LQ L  A N        S L NLTN+  L+  +   +   P+  + +TR+ 
Sbjct: 322 ISPVSSLTKLQRLFFANNKV---SDVSSLANLTNINWLSAGHNQISDLTPL--ANLTRIT 376

Query: 133 TLDLSG 138
            L L+ 
Sbjct: 377 QLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 2e-06
 Identities = 46/318 (14%), Positives = 92/318 (28%), Gaps = 42/318 (13%)

Query: 645 NATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCS-LRTLD 703
                +   L    ++  +    ++    Q+  L   R  +    S       + L  ++
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLD----QVTTLQADRLGIK---SIDGVEYLNNLTQIN 72

Query: 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISC 763
            + NQL  + P  L N + L  + + NNQ  D  P           L          +  
Sbjct: 73  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 764 PRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAY 823
                   +        +  SG    + L     +   +  +            N     
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 824 YQDAITVTIKGLEMKLAKILNIF--------TSIDFSRNNFEGPIPEEMGLLQSLCALNL 875
              A    ++ L     +I +I           +  + N  +      +  L +L  L+L
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 248

Query: 876 SHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLAS--------------------L 915
           ++N ++   P  +  L ++  L L  N +S   P    +                    L
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 916 NFLSVLNLSYNHLVGRIP 933
             L+ L L +N++    P
Sbjct: 307 KNLTYLTLYFNNISDISP 324

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 80.2 bits (196), Expect = 9e-17
 Identities = 53/276 (19%), Positives = 95/276 (34%), Gaps = 8/276 (2%)

Query: 636 TGVIPESICNATNLLVLDLSYNYLSGM--IPTCLINMSDSQLGVLNLRRNNLNGTVSATF 693
            GV+ ++      +  LDLS   L     IP+ L N+       +    NNL G +    
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIPPAI 97

Query: 694 PANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR 753
                L  L +    + G +P  L+    L  LD   N    T P  + +   L  +   
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQ 813
            N   G I    Y     +   + ++ N+ +    +         +     S++ L+   
Sbjct: 158 GNRISGAI-PDSYGSFSKLFTSMTISRNRLT---GKIPPTFANLNLAFVDLSRNMLEGDA 213

Query: 814 YRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCAL 873
                  +   +  +       ++    +      +D   N   G +P+ +  L+ L +L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 874 NLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIP 909
           N+S N L G IP   GNL+  +    + N      P
Sbjct: 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.1 bits (188), Expect = 9e-16
 Identities = 75/370 (20%), Positives = 112/370 (30%), Gaps = 70/370 (18%)

Query: 8   CQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCC--TWSGVDCDEAG---RVIGLDLS 62
           C    +  LLQ+K  L   +++S     W  + DCC  TW GV CD      RV  LDLS
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLS----SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 63  EESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIP 122
             ++       SSL +L YL  L +         IP  +  LT L  L +++   +G IP
Sbjct: 59  GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

Query: 123 IQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQ 182
             +S +  LVTLD S                                             
Sbjct: 119 DFLSQIKTLVTLDFSYNAL------------------------------------SGTLP 142

Query: 183 ALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSL 242
              S +P L  ++  G  +SG +  S  +   L        +  +         +   + 
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLNLAF 201

Query: 243 YLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILP 302
              S  +       +                L   L     + +L  L L      G LP
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261

Query: 303 DSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLD 362
             +  LK L                          L++SFN+  G IP     +      
Sbjct: 262 QGLTQLKFLH------------------------SLNVSFNNLCGEIPQGGNLQRFDVSA 297

Query: 363 LSYNIFTGGI 372
            + N    G 
Sbjct: 298 YANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.9 bits (185), Expect = 2e-15
 Identities = 48/269 (17%), Positives = 89/269 (33%), Gaps = 8/269 (2%)

Query: 420 HVTEISNASSSLLDTLDLSDNNLEG--PIPLSFFELKNLKILLLSSNKFVGTIELDAIQR 477
            V   ++  +  ++ LDLS  NL    PIP S   L  L  L +     +      AI +
Sbjct: 40  GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99

Query: 478 LRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLDLSDN 536
           L  L  L +++  ++      +     L+T     +     +P  +     L  +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159

Query: 537 QISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPL 596
           +ISG IP+      K   +     + L    + P + ++L    V    +          
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTG--KIPPTFANLNLAFVDLSRNMLEGDASVLF 217

Query: 597 PPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSY 656
             +           + +  +                N + G +P+ +     L  L++S+
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 657 NYLSGMIPTCLINMSDSQLGVLNLRRNNL 685
           N L G IP    N+   +  V     N  
Sbjct: 278 NNLCGEIPQ-GGNL--QRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 75.2 bits (183), Expect = 4e-15
 Identities = 56/299 (18%), Positives = 98/299 (32%), Gaps = 31/299 (10%)

Query: 665 TCLINMSDSQLGVLNLRRNNLNG--TVSATFPANCSLRTLDLNGN-QLEGMVPKSLANCS 721
            C  +    ++  L+L   NL     + ++      L  L + G   L G +P ++A  +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 722 VLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN 781
            L  L + +       P ++     L  L    N   G    P    S P L  I    N
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGN 159

Query: 782 KFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAK 841
           + SG +P  +    +               +   F NL+ A+   +  +      +    
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 842 ILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSM 901
             N         +         +    +    +L +N + G++P  +  L+ + SL++S 
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGL--DLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 902 NNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVC 960
           NNL G                         IP    LQ F  +++  N  L G PL  C
Sbjct: 278 NNLCGE------------------------IPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.4 bits (181), Expect = 8e-15
 Identities = 62/268 (23%), Positives = 99/268 (36%), Gaps = 6/268 (2%)

Query: 185 SSLVPKLQVLSLSGCFLSG--PVDPSLSNLRSLSVIRLDMND-LYSPVPEFLADFSNLTS 241
            +   ++  L LSG  L    P+  SL+NL  L+ + +   + L  P+P  +A  + L  
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 242 LYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGIL 301
           LY++   + GA P+ + Q+ TL TLD SYN L     P      +L  +       SG +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 302 PDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYL 361
           PDS  +   L        N              L ++D+S N   G    L         
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 362 DLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHV 421
                                    DL +N + G++PQ L +L  +  L ++ N   G +
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 422 TEISNASSSLLDTLDLSDNNLEGPIPLS 449
            +  N      D    ++N      PL 
Sbjct: 285 PQGGNLQR--FDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 56/299 (18%), Positives = 97/299 (32%), Gaps = 28/299 (9%)

Query: 319 CNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWE 378
             + G +  + +   ++  LD+S  +   P P      NL YL+                
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN---------------- 79

Query: 379 QLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLS 438
                F      NNL G IP ++ +L  + +L +      G + +  +   + L TLD S
Sbjct: 80  -----FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFS 133

Query: 439 DNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSS 498
            N L G +P S   L NL  +    N+  G I        +    + +S NRL      +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 499 VYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLN 558
                         S  +             +        +    +        + N L+
Sbjct: 194 FANLNL---AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250

Query: 559 LSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP--PNAAYVDYSGNNFTSSIP 615
           L +N +     P  ++ L  L  L++  N + G+IP            Y+ N      P
Sbjct: 251 LRNNRI-YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 3e-16
 Identities = 43/260 (16%), Positives = 85/260 (32%), Gaps = 11/260 (4%)

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
            +   L L +  +          L  L TL L  N++ + S   F   + LE L LS   
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
              +     K L+ L   E  +      +   ++ +  +               +    +
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416
            L+Y+ ++       I++I      +L  + L  N +      SL  L  +  L L+ N 
Sbjct: 151 KLSYIRIADT----NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 417 FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIE----- 471
                      +   L  L L++N L   +P    + K ++++ L +N            
Sbjct: 207 ISAVDNGSLANTPH-LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 472 LDAIQRLRNLFRLDLSYNRL 491
                +  +   + L  N +
Sbjct: 265 PGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 3e-15
 Identities = 51/284 (17%), Positives = 94/284 (33%), Gaps = 12/284 (4%)

Query: 185 SSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYL 244
             L P   +L L    ++   D    NL++L  + L  N +    P   A    L  LYL
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 245 SSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDS 304
           S   L     +    L  L   +    ++ +      +Q + +E L  +    SGI   +
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 305 IKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLS 364
            + +K LS +     N    IP  +     L  L +  N  +    +     N       
Sbjct: 146 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 365 YNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQF-----DG 419
                  + +       +L  + L++N L   +P  L +   +Q + L +N       + 
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 420 HVTEISNASSSLLDTLDLSDNNLE--GPIPLSFFELKNLKILLL 461
                 N   +    + L  N ++     P +F  +     + L
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 4e-14
 Identities = 60/299 (20%), Positives = 101/299 (33%), Gaps = 38/299 (12%)

Query: 418 DGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQR 477
           D  + ++          LDL +N +       F  LKNL  L+L +NK    I   A   
Sbjct: 19  DLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAP 77

Query: 478 LRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQ 537
           L  L RL LS N+L  +                                    L + +N+
Sbjct: 78  LVKLERLYLSKNQLKELPEKMPKTL--------------------------QELRVHENE 111

Query: 538 ISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP 597
           I+    +    + +     L  ++ L  S  +  +   +  LS + +    I      LP
Sbjct: 112 ITKVRKSVFNGLNQMIVVELG-TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP 170

Query: 598 PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN 657
           P+   +   GN  T      +    +L      S NS++ V   S+ N  +L  L L+ N
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNL-AKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229

Query: 658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFP------ANCSLRTLDLNGNQLE 710
            L  +      +     + V+ L  NN++   S  F          S   + L  N ++
Sbjct: 230 KLVKVPGGLADHKY---IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 56/322 (17%), Positives = 96/322 (29%), Gaps = 40/322 (12%)

Query: 43  CTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLG 102
           C    V C         DL  E +   +              L+L  N            
Sbjct: 10  CHLRVVQCS--------DLGLEKVPKDLPPD--------TALLDLQNNKIT-EIKDGDFK 52

Query: 103 NLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAE 162
           NL NL TL L N   +   P   + + +L  L LS       P K+              
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---------- 102

Query: 163 LRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDM 222
            +EL +    I+         L+     +  L  +    SG  + +   ++ LS IR+  
Sbjct: 103 -QELRVHENEITKVRKSVFNGLNQ--MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159

Query: 223 NDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFH 282
            ++ +          +LT L+L    +       +  L  L  L LS+N +         
Sbjct: 160 TNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 216

Query: 283 QNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNG------PIPTSMSDLSQLV 336
               L  L L+      + P  + + K +  V  +  N +         P   +  +   
Sbjct: 217 NTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 337 YLDMSFNHFSGPIPSLHMFRNL 358
            + +  N           FR +
Sbjct: 276 GVSLFSNPVQYWEIQPSTFRCV 297

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 53/304 (17%), Positives = 98/304 (32%), Gaps = 43/304 (14%)

Query: 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS 690
           S   L   +P+ +    +  +LDL  N ++ +      N+    L  L L  N ++    
Sbjct: 18  SDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLK--NLHTLILINNKISKISP 72

Query: 691 ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVL 750
             F     L  L L+ NQL+ +  K       L +     N+            +++ V+
Sbjct: 73  GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH---ENEITKVRKSVFNGLNQMIVV 129

Query: 751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELK 810
            L +N    +            L  I +A    +  +PQ    +L               
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLT-------------- 174

Query: 811 HLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL 870
                 L+L           ++KGL             +  S N+        +     L
Sbjct: 175 -----ELHLDGNKITKVDAASLKGLNN--------LAKLGLSFNSISAVDNGSLANTPHL 221

Query: 871 CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG------TIPAQLASLNFLSVLNLS 924
             L+L++N L   +P  + + + I+ + L  NN+S         P         S ++L 
Sbjct: 222 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 280

Query: 925 YNHL 928
            N +
Sbjct: 281 SNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.3 bits (142), Expect = 7e-10
 Identities = 46/329 (13%), Positives = 90/329 (27%), Gaps = 46/329 (13%)

Query: 603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM 662
           V  S       +P D+    +         N +T +      N  NL  L L  N +S +
Sbjct: 15  VQCSDLGLEK-VPKDLPPDTA---LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 663 IPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722
            P     +                            L  L L+ NQL+ +  K       
Sbjct: 71  SPGAFAPLV--------------------------KLERLYLSKNQLKELPEKMPKTLQE 104

Query: 723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNK 782
           L +     N+            +++ V+ L +N    +            L  I +A   
Sbjct: 105 LRVH---ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161

Query: 783 FSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKI 842
            +  +PQ    +L  + +D  +             NL++          +    +     
Sbjct: 162 IT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

Query: 843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG------SIPSLIGNLREIES 896
           L          NN    +P  +   + +  + L +N ++         P           
Sbjct: 221 LRELH----LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Query: 897 LDLSMNNLSGT--IPAQLASLNFLSVLNL 923
           + L  N +      P+    +   + + L
Sbjct: 277 VSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (134), Expect = 6e-09
 Identities = 66/275 (24%), Positives = 103/275 (37%), Gaps = 10/275 (3%)

Query: 696 NCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN 755
            C LR +  +   LE  VPK L       +LDL NN+  +      KN   LH LIL +N
Sbjct: 9   QCHLRVVQCSDLGLEK-VPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 756 NFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYR 815
                   P        L+ + L+ N+    LP+K    L+ + V E      ++   + 
Sbjct: 66  KISKIS--PGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITK-VRKSVFN 121

Query: 816 FLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNL 875
            LN           +   G+E    + +   + I  +  N    IP+  GL  SL  L+L
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHL 178

Query: 876 SHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTS 935
             N +T    + +  L  +  L LS N++S      LA+   L  L+L+ N LV      
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

Query: 936 TQLQSFLATSFEGNDRLWGPPLNVCPTNSSKALPS 970
              +         N+       + CP   +    S
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 9e-09
 Identities = 48/332 (14%), Positives = 88/332 (26%), Gaps = 47/332 (14%)

Query: 578 SLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTG 637
            L V+      ++     LPP+ A +D   N  T     D  +  +L        N ++ 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLH-TLILINNKISK 69

Query: 638 VIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANC 697
           + P +      L  L LS N L  +       + +     L +  N +     + F    
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE-----LRVHENEITKVRKSVFNGLN 124

Query: 698 SLRTLDLNGNQLE--GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN 755
            +  ++L  N L+  G+   +      L  + + +            +   L  L L  N
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGN 181

Query: 756 NFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYR 815
                            L  + L+ N  S             +      +   L+ L   
Sbjct: 182 KITKVD--AASLKGLNNLAKLGLSFNSISA------------VDNGSLANTPHLRELHLN 227

Query: 816 FLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG------PIPEEMGLLQS 869
              L +     A                     +    NN           P       S
Sbjct: 228 NNKLVKVPGGLA--------------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

Query: 870 LCALNLSHNALTGS--IPSLIGNLREIESLDL 899
              ++L  N +      PS    +    ++ L
Sbjct: 274 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 24/108 (22%), Positives = 35/108 (32%)

Query: 865 GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLS 924
            L      L+L +N +T        NL+ + +L L  N +S   P   A L  L  L LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 925 YNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTNSSKALPSAP 972
            N L        +    L        ++     N         L + P
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 5e-13
 Identities = 45/285 (15%), Positives = 81/285 (28%), Gaps = 30/285 (10%)

Query: 185 SSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYL 244
             +    Q + L G  +S     S    R+L+++ L  N L           + L  L L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 245 SSCGLHGA-FPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPD 303
           S      +  P     L  L TL L    L +     F    +L+ L L       +  D
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 304 SIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDL 363
           + ++L NL+ +  +    +     +   L  L  L +  N  +   P             
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 364 SYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTE 423
            +      + +     L  L ++ L+ N                                
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--------------------- 246

Query: 424 ISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVG 468
                 + L     S + +   +P     L    +  L++N   G
Sbjct: 247 -----WAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 5e-12
 Identities = 44/300 (14%), Positives = 86/300 (28%), Gaps = 35/300 (11%)

Query: 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS 690
            +  L   +P  I        + L  N +S +         +  +  L+          +
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLH-SNVLARIDAA 74

Query: 691 ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVL 750
           A        +    +  QL  + P +      L  L L      +  P   +  + L  L
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELK 810
            L+ N                 L  + L  N+ S  +P++    L               
Sbjct: 135 YLQDNALQALP--DDTFRDLGNLTHLFLHGNRISS-VPERAFRGL--------------H 177

Query: 811 HLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL 870
            L    L+ ++             +     + L    ++    NN      E +  L++L
Sbjct: 178 SLDRLLLHQNRVA----------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 871 CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930
             L L+ N               ++    S + +  ++P +LA      +  L+ N L G
Sbjct: 228 QYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 4e-11
 Identities = 45/251 (17%), Positives = 84/251 (33%), Gaps = 5/251 (1%)

Query: 146 LKLENPNLSGLLQN-LAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGP 204
           + L    +S +        R L +  ++ +        A + L    Q+       L   
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
              +   L  L  + LD   L    P      + L  LYL    L     +    L  L 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 265 TLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGP 324
            L L  N +       F    SL+ L+L     + + P + ++L  L  +  +  N +  
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 325 IPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLF 384
              +++ L  L YL ++ N +     +  ++  L     S +     +     ++L    
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP----QRLAGRD 272

Query: 385 HVDLSHNNLGG 395
              L+ N+L G
Sbjct: 273 LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 3e-10
 Identities = 46/286 (16%), Positives = 90/286 (31%), Gaps = 11/286 (3%)

Query: 501 CFPPLLTTLSLASCKLSAIP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNL 559
           C+     T S     L A+P  +   ++   + L  N+IS             +   L+ 
Sbjct: 8   CYNEPKVTTSCPQQGLQAVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 560 SHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIG 619
           +    +       ++ L  L + D    +             +  +        +   + 
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125

Query: 620 SFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLN 679
             ++   +     N+L  +  ++  +  NL  L L  N +S +       +    L  L 
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL--HSLDRLL 183

Query: 680 LRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPC 739
           L +N +       F     L TL L  N L  +  ++LA    L+ L L +N +     C
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV----C 239

Query: 740 WVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG 785
             +    L   + +       + C           +  LA+N   G
Sbjct: 240 DCRARP-LWAWLQKFRGSSSEVPC-SLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 6e-10
 Identities = 44/246 (17%), Positives = 72/246 (29%), Gaps = 11/246 (4%)

Query: 552 DSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP---PNAAYVDYSGN 608
           +     +     L ++  P  I    +   + LH N+I            N   +    N
Sbjct: 11  EPKVTTSCPQQGLQAV--PVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN 66

Query: 609 NFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLI 668
                          L          L  V P +      L  L L             +
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG--LQELGPGL 124

Query: 669 NMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728
               + L  L L+ N L      TF    +L  L L+GN++  +  ++      L+ L L
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184

Query: 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788
             N+     P   ++  RL  L L +NN   +            LQ + L  N +     
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRLNDNPWVCDCR 242

Query: 789 QKWLLN 794
            + L  
Sbjct: 243 ARPLWA 248

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 47/270 (17%), Positives = 81/270 (30%), Gaps = 14/270 (5%)

Query: 422 TEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNL 481
             +     +    + L  N +      SF   +NL IL L SN                 
Sbjct: 24  QAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 482 FRLDLSYNRLAVVAGSSVYCFPPLLT-TLSLASCKLSAIPNLRKQTKLYHLDLSDNQISG 540
                   +L  V  ++ +    L T  L     +       R    L +L L DN +  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 541 EIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPL---P 597
              +    +   +  HL L  N + S+ +  +   L SL  L LH N++    P      
Sbjct: 144 LPDDTFRDL--GNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 598 PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN 657
                +    NN ++     +    +L  +   + N        +      L     S +
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQ-YLRLNDNPWVC-DCRARPLWAWLQKFRGSSS 258

Query: 658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNG 687
            +   +P  L         +  L  N+L G
Sbjct: 259 EVPCSLPQRLAGRD-----LKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 52/260 (20%), Positives = 78/260 (30%), Gaps = 29/260 (11%)

Query: 671 SDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGN 730
            +      +  +  L   V    PA    + + L+GN++  +   S   C  L IL L +
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 731 NQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQK 790
           N             + L  L L  N    ++  P        L  + L         P  
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 791 WLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSID 850
           +                    LQY +L  +           ++ L     + L   T + 
Sbjct: 125 FRGL---------------AALQYLYLQDNA----------LQALPDDTFRDLGNLTHLF 159

Query: 851 FSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPA 910
              N            L SL  L L  N +    P    +L  + +L L  NNLS     
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 911 QLASLNFLSVLNLSYNHLVG 930
            LA L  L  L L+ N  V 
Sbjct: 220 ALAPLRALQYLRLNDNPWVC 239

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 3e-11
 Identities = 42/272 (15%), Positives = 88/272 (32%), Gaps = 18/272 (6%)

Query: 240 TSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSG 299
            +L L+   LH     ++L    +       +  +   L +      ++ + LS +    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVI-AFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 300 I-LPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNL 358
             L   +     L  +       + PI  +++  S LV L++S            +  + 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 359 AYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFE--------LPMVQHL 410
           + LD     +    +    +  +      ++  NL G                 P + HL
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 411 LLADNQFDGHVTEISNASSSLLDTLDLSD-NNLEGPIPLSFFELKNLKILLLSSNKFVGT 469
            L+D+    +         + L  L LS   ++     L   E+  LK L +      G 
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF-----GI 235

Query: 470 IELDAIQRL-RNLFRLDLSYNRLAVVAGSSVY 500
           +    +Q L   L  L ++ +    +A  ++ 
Sbjct: 236 VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 45/276 (16%), Positives = 89/276 (32%), Gaps = 14/276 (5%)

Query: 361 LDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGH 420
           LDL+       +   G      +       + +   + +  F    VQH+ L+++  +  
Sbjct: 5   LDLTGKNLHPDV--TGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVS 61

Query: 421 VTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRN 480
                 +  S L  L L    L  PI  +  +  NL  L  + +   G  E      L +
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL--NLSGCSGFSEFALQTLLSS 119

Query: 481 LFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISG 540
             RLD                      + ++    LS      +++ L  L      +  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 541 EIPNWLWKIGKDSFN---------HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQG 591
              +    +  D F          HL+LS    +  E    + ++ +L  L +      G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 592 KIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIF 627
            +  L     ++  + ++FT+     IG+  +  I+
Sbjct: 240 TLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 43/287 (14%), Positives = 92/287 (32%), Gaps = 27/287 (9%)

Query: 652 LDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEG 711
           LDL+   L    P     +    +      R+ ++  ++  F +   ++ +DL+ + +E 
Sbjct: 5   LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 712 -MVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW 770
             +   L+ CS L+ L L   +  D     +   S L  L L   + F   +      S 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 771 PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITV 830
             L  ++L+          +  +   +  + +       K+LQ   L+            
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP----- 175

Query: 831 TIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSH-NALTGSIPSLIG 889
                        N+           +    +E   L  L  L+LS    +       +G
Sbjct: 176 -------------NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222

Query: 890 NLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTST 936
            +  +++L +      GT+     +   L  L ++ +H       + 
Sbjct: 223 EIPTLKTLQVFGIVPDGTLQLLKEA---LPHLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 10/258 (3%)

Query: 56  VIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNA 115
           VI        +   +    S F +   Q ++L+ ++   + +   L   + L  L+L   
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPFRV---QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 116 GFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA 175
             +  I   ++  + LV L+LSG        +     L      L EL   +        
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFS---EFALQTLLSSCSRLDELNLSWCFDFTEKH 138

Query: 176 PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLAD 235
             +       ++              S            + +   D   L +   +    
Sbjct: 139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198

Query: 236 FSNLTSLYLSSC-GLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSA 294
            + L  L LS C  +      ++ ++PTL+TL +    +  G+L    +  +L  L ++ 
Sbjct: 199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--ALPHLQINC 255

Query: 295 TNFSGILPDSIKNLKNLS 312
           ++F+ I   +I N KN  
Sbjct: 256 SHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 36/267 (13%), Positives = 78/267 (29%), Gaps = 15/267 (5%)

Query: 313 RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGI 372
            ++    N +  +   +     ++      +    P+        + ++DLS ++     
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 373 SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHL------LLADNQFDGHVTEISN 426
                 Q   L ++ L    L   I  +L +   +  L        ++      ++  S 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 427 ASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDL 486
                L                   E      L         +     ++R  NL  LDL
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 487 SYNRLAVVAGSSVYCFPPLLTTLSLASCKL---SAIPNLRKQTKLYHLDLSDNQISGEIP 543
           S + +        +     L  LSL+ C       +  L +   L  L +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 544 NWLWKIGKDSFNHLNLSHNLLVSLEQP 570
                  K++  HL ++ +   ++ +P
Sbjct: 243 LL-----KEALPHLQINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 50/298 (16%), Positives = 82/298 (27%), Gaps = 27/298 (9%)

Query: 431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNR 490
           L  TLDL+  NL   +         +       +       L        +  +DLS + 
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSV 57

Query: 491 LAVVAGSSVYCFPPLLTTLSLASCKLS--AIPNLRKQTKLYHLDLSDNQISGEIPNWLWK 548
           + V     +      L  LSL   +LS   +  L K + L  L+LS      E       
Sbjct: 58  IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 549 IGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGN 608
                 + LNLS     +                + H       +           Y  N
Sbjct: 118 SSCSRLDELNLSWCFDFT----------------EKHVQVAVAHVSETITQLNLSGYRKN 161

Query: 609 NFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSY-NYLSGMIPTCL 667
              S +   +    +L          L     +       L  L LS    +       L
Sbjct: 162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 221

Query: 668 INMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEI 725
             +    L  L +     +GT+        +L  L +N +    +   ++ N    EI
Sbjct: 222 GEI--PTLKTLQVFGIVPDGTLQLLKE---ALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 29/269 (10%), Positives = 66/269 (24%), Gaps = 21/269 (7%)

Query: 483 RLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSA-IPNLRKQTKLYHLDLSDNQISGE 541
            LDL+   L      +       +         +   +       ++ H+DLS++ I   
Sbjct: 4   TLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 542 IPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAA 601
             + +         +L+L    L S     +++  ++L  L+L       +         
Sbjct: 62  TLHGILSQCS-KLQNLSLEGLRL-SDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQT 115

Query: 602 YVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSG 661
            +         ++                  +     +  S            +      
Sbjct: 116 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 175

Query: 662 MIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG-NQLEGMVPKSLANC 720
            +    ++ S             L       F     L+ L L+    +       L   
Sbjct: 176 NLVHLDLSDS-----------VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 224

Query: 721 SVLEILDLGNNQFDDTFPCWVKNASRLHV 749
             L+ L +     D T     +    L +
Sbjct: 225 PTLKTLQVFGIVPDGTLQLLKEALPHLQI 253

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 7/211 (3%)

Query: 208 SLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLD 267
            +S + S   +  D  +L + +P  L    + T L+LS   L+      ++    L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 268 LSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPT 327
           L      + +       L +   +  + N    LP   + L  L+ ++            
Sbjct: 62  LDRA---ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 328 SMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVD 387
           ++  L +L  L +  N      P L             N     + +     L NL  + 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 388 LSHNNLGGSIPQSLFELPMVQHLLLADNQFD 418
           L  N+   +IP+  F   ++    L  N + 
Sbjct: 179 LQENS-LYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 6e-09
 Identities = 35/208 (16%), Positives = 51/208 (24%), Gaps = 8/208 (3%)

Query: 235 DFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSA 294
             ++   +      L  A P  +        L LS N L   SL        L  L L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD- 63

Query: 295 TNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHM 354
                        L  L  ++              +  +  V         S P+ +L  
Sbjct: 64  -RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 355 FRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLAD 414
              L  L L  N        +             ++NNL       L  L  +  LLL +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 415 NQFDGHVTEISNASSSLLDTLDLSDNNL 442
           N           +    L    L  N  
Sbjct: 182 NSLYTIPKGFFGSHL--LPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 42/241 (17%), Positives = 70/241 (29%), Gaps = 35/241 (14%)

Query: 664 PTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVL 723
           P C ++   S L V N  + NL   +    P +     L L+ N L      +L   + L
Sbjct: 2   PICEVSKVASHLEV-NCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRL 57

Query: 724 EILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKF 783
             L+L   +              L VL     +     S P    + P L ++D++ N+ 
Sbjct: 58  TQLNLDRAELTKLQVDG-----TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 784 SGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKIL 843
           +                                  L +          +K L   L    
Sbjct: 113 TS-------------------------LPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNN 903
                +  + NN        +  L++L  L L  N+L  +IP        +    L  N 
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 904 L 904
            
Sbjct: 207 W 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 41/224 (18%), Positives = 76/224 (33%), Gaps = 11/224 (4%)

Query: 572 SISDLTSLSVLDLHSNQIQGKIPP-LPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSF 630
            +S + S   ++     +   +PP LP +   +  S N   +     +  +  L+     
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL--- 60

Query: 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS 690
              +L       +     L VL       + +    L+  +   L VL++  N L     
Sbjct: 61  ---NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 691 ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVL 750
                   L+ L L GN+L+ + P  L     LE L L NN   +     +     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLN 794
           +L+ N+ +   + P+      +L    L  N +       +   
Sbjct: 178 LLQENSLY---TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRR 218

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 31/184 (16%), Positives = 52/184 (28%), Gaps = 3/184 (1%)

Query: 185 SSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYL 244
             L     +L LS   L      +L     L+  +L+++       +       L +L L
Sbjct: 27  PDLPKDTTILHLSENLLYTFSLATLMPYTRLT--QLNLDRAELTKLQVDGTLPVLGTLDL 84

Query: 245 SSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDS 304
           S   L                 D+S+N L    L        L+ L L       + P  
Sbjct: 85  SHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 305 IKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLS 364
           +     L ++     N        ++ L  L  L +  N              L +  L 
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203

Query: 365 YNIF 368
            N +
Sbjct: 204 GNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 43/199 (21%), Positives = 65/199 (32%), Gaps = 18/199 (9%)

Query: 95  TEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLS 154
           T +P  L    + T L+LS           +   TRL  L+L      +  +    P L 
Sbjct: 23  TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLG 80

Query: 155 GLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRS 214
            L  +  +L+ L L G  + A  +                      L+     +L  L  
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVS---------------FNRLTSLPLGALRGLGE 125

Query: 215 LSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELL 274
           L  + L  N+L +  P  L     L  L L++  L       +  L  L+TL L  N L 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 275 QGSLPDFHQNLSLETLILS 293
                 F  +  L    L 
Sbjct: 186 TIP-KGFFGSHLLPFAFLH 203

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 34/231 (14%), Positives = 59/231 (25%), Gaps = 53/231 (22%)

Query: 378 EQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDL 437
            ++ +   V+    NL  ++P  L                                 L L
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL---------------------------PKDTTILHL 38

Query: 438 SDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSY--------- 488
           S+N L      +      L  L L   +         +  L  L                
Sbjct: 39  SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQT 98

Query: 489 -----------NRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHL-DLSDN 536
                      NRL  +   ++     L       +   +  P L   T       L++N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158

Query: 537 QISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSN 587
            ++      L  +  ++ + L L  N L ++  P        L    LH N
Sbjct: 159 NLTELPAGLLNGL--ENLDTLLLQENSLYTI--PKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN 926
           + S   +N     LT ++P  +   ++   L LS N L     A L     L+ LNL   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 927 H 927
            
Sbjct: 66  E 66

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.0 bits (133), Expect = 9e-09
 Identities = 53/353 (15%), Positives = 98/353 (27%), Gaps = 44/353 (12%)

Query: 577 TSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLT 636
                L+L++  +   +P LPP+   +  S N+ T                         
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVASCNSLTE------------------------ 72

Query: 637 GVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPAN 696
             +PE   +  +LLV + +   LS + P        +          N +         N
Sbjct: 73  --LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKI-IDVDN 129

Query: 697 CSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNN 756
            SL+ L      LE +   +     + E+ +L            +K    L + +     
Sbjct: 130 NSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVA 189

Query: 757 FFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRF 816
               +       + P L  I   +N           L    +  +      EL       
Sbjct: 190 GNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFL 249

Query: 817 LNLSQAYYQDAITVTIKGLEMKLAKILNIF-------TSIDFSRNNFEGPIPEEMGLLQS 869
                 +   +            +  +            ++ S N     +P     L+ 
Sbjct: 250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLER 308

Query: 870 LCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLN 922
              L  S N L   +P L  NL++   L +  N L    P    S+  L + +
Sbjct: 309 ---LIASFNHLA-EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 53/329 (16%), Positives = 97/329 (29%), Gaps = 24/329 (7%)

Query: 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296
                L L++ GL  + PE     P LE+L  S N L    LP+  Q+L    +  +   
Sbjct: 38  RQAHELELNNLGLS-SLPELP---PHLESLVASCNSL--TELPELPQSLKSLLVDNNNLK 91

Query: 297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
               LP  ++ L   +     L          + D+       +     S    +    +
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGG----------SIPQSLFELPM 406
                +L    F   I +                + + G               L  +  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 407 VQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKF 466
             +LL         +  ++   + L D  +L  +     +  + F   +     L     
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 467 VGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQT 526
                        +L  L++S N+L       +   PP L  L  +   L+ +P L +  
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKL-----IELPALPPRLERLIASFNHLAEVPELPQ-- 324

Query: 527 KLYHLDLSDNQISGEIPNWLWKIGKDSFN 555
            L  L +  N +  E P+    +     N
Sbjct: 325 NLKQLHVEYNPLR-EFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 54/337 (16%), Positives = 95/337 (28%), Gaps = 31/337 (9%)

Query: 263 LETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFN 322
              L+L+   L   SLP+   +L  E+L+ S  + +  LP+  ++LK+L      L   +
Sbjct: 40  AHELELNNLGL--SSLPELPPHL--ESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALS 94

Query: 323 GPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLN 382
              P        L YL +S N         +          + ++          E +  
Sbjct: 95  DLPP-------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 383 LFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNL 442
             +       L      +           L D           N     L  L       
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF-- 205

Query: 443 EGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCF 502
                L+     N  +  L                L +L  L  S   L V         
Sbjct: 206 -----LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 260

Query: 503 PPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHN 562
                   L +              L  L++S+N++  E+P    ++       L  S N
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL-----ERLIASFN 314

Query: 563 LLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPN 599
            L  +          +L  L +  N ++ + P +P +
Sbjct: 315 HLAEVP-----ELPQNLKQLHVEYNPLR-EFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 52/310 (16%), Positives = 93/310 (30%), Gaps = 33/310 (10%)

Query: 644 CNATNLLVLDLSYNYLSGM--IPTCL--INMSDSQLGVL-----NLRRNNLNGTVSATFP 694
           C       L+L+   LS +  +P  L  +  S + L  L     +L+   ++        
Sbjct: 35  CLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94

Query: 695 ANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRL------- 747
               L       N     +P+   +  +  I    N+                       
Sbjct: 95  DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154

Query: 748 ----HVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803
                 L   +  +  N S  +       L+ I   +N        + L  L  +  D  
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214

Query: 804 RSQSE-----LKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG 858
             ++               N      +   ++T   +   +   L+      +  N    
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274

Query: 859 PIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFL 918
            I     L  SL  LN+S+N L   +P+L   L   E L  S N+L+  +P    +   L
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQN---L 326

Query: 919 SVLNLSYNHL 928
             L++ YN L
Sbjct: 327 KQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 220 LDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLP 279
             +N   + +        +L  L +S+  L    P      P LE L  S+N L    +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHL--AEVP 320

Query: 280 DFHQNLSLETLILSATNFSGILPDSIKNLKNL 311
           +  QN  L+ L +         PD  +++++L
Sbjct: 321 ELPQN--LKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 50/337 (14%), Positives = 102/337 (30%), Gaps = 29/337 (8%)

Query: 421 VTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRN 480
           V+ + +        L+L++  L   +P       +L+ L+ S N      EL  +   ++
Sbjct: 29  VSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT---ELPEL--PQS 79

Query: 481 LFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISG 540
           L  L +  N L      ++   PPLL      S          + +    +   DN    
Sbjct: 80  LKSLLVDNNNL-----KALSDLPPLL-EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 133

Query: 541 EIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNA 600
           ++P+    +   +  +  L     +      +     + S+  L    +  +      N 
Sbjct: 134 KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI 193

Query: 601 AYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLS 660
                   N      +   + +  ++           V    + +   L         L+
Sbjct: 194 LEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL------PQSLT 247

Query: 661 GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANC 720
            +  +  I    S+L       N  +  + +      SL  L+++ N+L   +P      
Sbjct: 248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR- 305

Query: 721 SVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
             LE L    N      P   +N   L  L +  N  
Sbjct: 306 --LERLIASFNHL-AEVPELPQN---LKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 7e-04
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 866 LLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSY 925
           L +    L L++  L+ S+P L  +L   ESL  S N+L+  +P    SL  L V N + 
Sbjct: 36  LDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNL 90

Query: 926 NHLVGRIP 933
             L    P
Sbjct: 91  KALSDLPP 98

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 48/348 (13%), Positives = 82/348 (23%), Gaps = 36/348 (10%)

Query: 556 HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIP 615
            L L++  L SL           L  L    N +  ++P LP +   +    NN  +   
Sbjct: 42  ELELNNLGLSSLP-----ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD 95

Query: 616 VDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQL 675
           +               K               +   L    +    +      N    +L
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 676 GVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD 735
             L                       L L        + + L     L  L       + 
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 736 TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL 795
                    S   + +  +                    I    S             N 
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 796 EAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNN 855
              + D   S   L+ L      L                  +L  +      +  S N+
Sbjct: 276 IRSLCDLPPS---LEELNVSNNKLI-----------------ELPALPPRLERLIASFNH 315

Query: 856 FEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNN 903
               +PE   L Q+L  L++ +N L    P +  ++      DL MN+
Sbjct: 316 LAE-VPE---LPQNLKQLHVEYNPLR-EFPDIPESVE-----DLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 52/326 (15%), Positives = 96/326 (29%), Gaps = 29/326 (8%)

Query: 474 AIQRLR-----NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKL 528
           A+ RLR         L+L+   L     SS+   PP L +L  +   L+ +P L +  K 
Sbjct: 28  AVSRLRDCLDRQAHELELNNLGL-----SSLPELPPHLESLVASCNSLTELPELPQSLKS 82

Query: 529 YHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQ 588
             +D ++ +   ++P  L  +G  +     L      S  +   + + +   + DL  + 
Sbjct: 83  LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 142

Query: 589 IQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATN 648
                            +    T+    +        +  S         I E +    N
Sbjct: 143 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN 202

Query: 649 LLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT------- 701
           L  L   Y   + +     +  S   L V +    +L     +    + S          
Sbjct: 203 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 262

Query: 702 --LDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFG 759
                  N     +         LE L++ NN+  +          RL  LI   N+   
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAE 318

Query: 760 NISCPRYNVSWPMLQIIDLASNKFSG 785
               P        L+ + +  N    
Sbjct: 319 VPELP------QNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 543 PNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAY 602
                     S    NL +    S E         SL  L++ +N++  ++P LPP    
Sbjct: 250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER 308

Query: 603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNL 649
           +  S N+    +P    +   L +      N L    P+   +  +L
Sbjct: 309 LIASFNHLA-EVPELPQNLKQLHV----EYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 51/351 (14%), Positives = 99/351 (28%), Gaps = 54/351 (15%)

Query: 382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNN 441
               ++L++  L  S+P+    L                            ++L  S N+
Sbjct: 39  QAHELELNNLGLS-SLPELPPHL----------------------------ESLVASCNS 69

Query: 442 LEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYC 501
           L   +P     LK+L +   +         L     + N     L   + +         
Sbjct: 70  LT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 128

Query: 502 FPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSH 561
              L     L            +  +L  L       +    N   K   D    L    
Sbjct: 129 NNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIV 188

Query: 562 NLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIP----------PLPPNAAYVDYSGNNFT 611
                LE+   + +L  L+ +   +N ++                       +   +   
Sbjct: 189 AGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTF 248

Query: 612 SSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMS 671
             +  +I S +S      +  N+ +  I        +L  L++S N L   +P       
Sbjct: 249 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP---- 303

Query: 672 DSQLGVLNLRRNNLNGTVSATFPANC-SLRTLDLNGNQLEGM--VPKSLAN 719
             +L  L    N+L        P    +L+ L +  N L     +P+S+ +
Sbjct: 304 -PRLERLIASFNHLA-----EVPELPQNLKQLHVEYNPLREFPDIPESVED 348

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (134), Expect = 1e-08
 Identities = 52/454 (11%), Positives = 107/454 (23%), Gaps = 25/454 (5%)

Query: 480 NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAI------PNLRKQTKLYHLDL 533
           ++  LD+    L+    + +         + L  C L+          LR    L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 534 SDNQISGEIPNWLWKIGKD---SFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590
             N++     + + +  +        L+L +  L         S L +L  L        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 591 GKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLL 650
                                  + ++  S  + S     S         E   +  ++ 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE 710
              +           C +     +        N  +        A+     L  N     
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLE-SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 711 GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW 770
           GM             L                +  R+        +              
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR---AKESLKELSLAGNELGDE 298

Query: 771 PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITV 830
               + +                           S    ++     L +S    +DA   
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 831 TIKGLEMKLAKILNIFTSIDFSRNNFEG----PIPEEMGLLQSLCALNLSHNALTGSIP- 885
            +     +   +L     +  +  +        +   +    SL  L+LS+N L  +   
Sbjct: 359 ELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 886 ----SLIGNLREIESLDLSMNNLSGTIPAQLASL 915
               S+      +E L L     S  +  +L +L
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 670 MSDSQLGVLNLRRNNLNGT----VSATFPANCSLRTLDLNGNQLEGMVPKSLA-----NC 720
              S L VL L   +++ +    ++AT  AN SLR LDL+ N L       L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 721 SVLEILDLGNNQFDDTFPCWVKNASRLH 748
            +LE L L +  + +     ++   +  
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 50/470 (10%), Positives = 116/470 (24%), Gaps = 40/470 (8%)

Query: 263 LETLDLSYNELLQGSLPDFHQNL-SLETLILSATNFSGI----LPDSIKNLKNLSRVEFY 317
           +++LD+   EL      +    L   + + L     +      +  +++    L+ +   
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 318 LCNFNGPIPTSMSDL-----SQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGI 372
                      +         ++  L +     +G    +              +    +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL----PTLQELHL 119

Query: 373 SSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLL 432
           S             +   +         L    +                +    + S  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLA 492
           D  +     L   +  S  +L+ LK+                +    +L  L L  N+  
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-L 238

Query: 493 VVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKD 552
              G +  C   L  +  L +  +       K        L   +   E+     ++G +
Sbjct: 239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 298

Query: 553 SFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTS 612
               L  +        +   +   +  +    H + +  +   L       +   +    
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 613 SIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNA----TNLLVLDLSYNYLSGMIPTCLI 668
            +   +G   S+      +   ++     S+        +L  LDLS N L       L+
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 669 NMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLA 718
                      +R+              C L  L L        +   L 
Sbjct: 419 ES---------VRQP------------GCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 3e-05
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 843 LNIFTSIDFSRNNF-EGPIPEEMGLLQSLCALNLSHNALTG----SIPSLIGNLREIESL 897
           L+I  S+D       +    E + LLQ    + L    LT      I S +     +  L
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 898 DLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
           +L  N L       +          +    L
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 29/120 (24%)

Query: 82  LQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYF 141
           +QSL++     +       L  L     + L + G                         
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK------------------ 45

Query: 142 VRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEW-CQALSSLVPKLQVLSLSGCF 200
                     ++S  L+    L EL L    +   G+    Q L +   K+Q LSL  C 
Sbjct: 46  ----------DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 211 NLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHG----AFPEKILQLPTLETL 266
           +++SL +   +++D  +   E L        + L  CGL           +   P L  L
Sbjct: 3   DIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 267 DLSYNELLQGSLPDF-----HQNLSLETLILSATNF 297
           +L  NEL    +          +  ++ L L     
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 18/91 (19%), Positives = 27/91 (29%), Gaps = 9/91 (9%)

Query: 59  LDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFN---ATEIPSGLGNLTNLTTLNLSNA 115
           LD+  E +S     +  L  L+  Q + L           +I S L     L  LNL + 
Sbjct: 7   LDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 116 GFAGQIPIQVSGM-----TRLVTLDLSGMYF 141
                    V         ++  L L     
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 381 LNLFHVDLSHNNLGGSIPQSLFE-LPMVQHLLLADNQF-DGHVTEISNASSSL--LDTLD 436
           L++  +D+    L  +    L   L   Q + L D    +    +IS+A      L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 437 LSDNNLEGPIPLSFFEL-----KNLKILLLSSNKF 466
           L  N L         +        ++ L L +   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 236 FSNLTSLYLSSCGLHG----AFPEKILQLPTLETLDLSYNELLQGSLPDF-----HQNLS 286
            S L  L+L+ C +      +    +L   +L  LDLS N L    +             
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 287 LETLILSATNFSGILPDSIKNLK 309
           LE L+L    +S  + D ++ L+
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 30/117 (25%)

Query: 82  LQSLNLAFNMFN---ATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSG 138
           L+ L LA    +    + + + L    +L  L+LSN        +  +G+ +LV      
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN------NCLGDAGILQLV------ 418

Query: 139 MYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLS 195
                            + Q    L +L L  +  S    +  QAL    P L+V+S
Sbjct: 419 ---------------ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGG----SIPQSLFELPMVQHLLL 412
           ++  LD+     +    +     L     V L    L       I  +L   P +  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 413 ADNQF-DGHVTEISNA---SSSLLDTLDLSDNN 441
             N+  D  V  +       S  +  L L +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 0.001
 Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 11/120 (9%)

Query: 284 NLSLETLILSATNFSGI-LPDSIKNLKNLSRVEFYLCNFNG----PIPTSMSDLSQLVYL 338
           +L +++L +     S     + +  L+    V    C         I +++     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 339 DMSFNHFSGPIPSL------HMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNN 392
           ++  N                    +  L L     TG    +    L  L  +   H +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 27/115 (23%)

Query: 352 LHMFRNLAYLDLSYNIFTG-GISSIGW--EQLLNLFHVDLSHNNLGGSIPQSLFELPMVQ 408
                 L  L L+    +    SS+        +L  +DLS+N LG +    L E     
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE----- 419

Query: 409 HLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELK----NLKIL 459
              +                  LL+ L L D      +      L+    +L+++
Sbjct: 420 --SVRQP-------------GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 9/98 (9%)

Query: 131 LVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEW-CQALSSLVP 189
           + +LD+          +L +   + LL  L + + + LD   ++    +    AL    P
Sbjct: 4   IQSLDIQCE-------ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-P 55

Query: 190 KLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
            L  L+L    L       +         ++    L +
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 114 NAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNI 173
           +AG            + L  L L+      +       +L+  L     LREL L    +
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS----SLAATLLANHSLRELDLSNNCL 409

Query: 174 SAPGIEW-CQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLR 213
              GI    +++      L+ L L   + S  ++  L  L 
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 191 LQVLSLSGCFLS-GPVDPSLSNLRSLSVIRLDMNDL----YSPVPEFLADFSNLTSLYLS 245
           +Q L +    LS       L  L+   V+RLD   L       +   L     L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 246 SCGLHGAFPEKILQL-----PTLETLDLSYN 271
           S  L       +LQ        ++ L L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.5 bits (120), Expect = 5e-08
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 19/104 (18%)

Query: 508 TLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPN-------------------WLWK 548
            L LA   L+ + +L +   + HLDLS N++    P                        
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 549 IGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGK 592
                   L L +N L        +     L +L+L  N +  +
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 387 DLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPI 446
            L+H +L  ++   L +L +V HL L+ N+       ++      L  L++   +     
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAA-----LRCLEVLQASDNALE 56

Query: 447 PL-SFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAG 496
            +     L  L+ LLL +N+   +  +  +     L  L+L  N L    G
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 6e-06
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 557 LNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPV 616
           L+L+H  L  L     +  L  ++ LDL  N+++   P L      ++    +  +   V
Sbjct: 3   LHLAHKDLTVLC---HLEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALENV 58

Query: 617 DIGSFMSLSIFFSFSKNSLTGV-IPESICNATNLLVLDLSYNYLSG 661
           D  + +          N L      + + +   L++L+L  N L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 629 SFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT 688
             +   LT  +   +     +  LDLS+N L  + P          L   +    N++G 
Sbjct: 4   HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG- 60

Query: 689 VSATFPANCSLRTLDLNGNQLEGM-VPKSLANCSVLEILDLGNNQF 733
                     L+ L L  N+L+     + L +C  L +L+L  N  
Sbjct: 61  ----VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 25/120 (20%)

Query: 317 YLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLA----------------- 359
           +L + +  +   +  L  + +LD+S N      P+L   R L                  
Sbjct: 4   HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 63

Query: 360 -----YLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGG--SIPQSLFE-LPMVQHLL 411
                 L L  N      +         L  ++L  N+L     I + L E LP V  +L
Sbjct: 64  LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 677 VLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736
           VL+L   +L  TV         +  LDL+ N+L  + P +LA    LE+L   +N  ++ 
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 737 FPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG 785
                    +  +L    NN     +  +  VS P L +++L  N    
Sbjct: 59  DGVANLPRLQELLL---CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 22/112 (19%)

Query: 434 TLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIE--------------------LD 473
            L L+  +L     L   +L  +  L LS N+                          +D
Sbjct: 2   VLHLAHKDLTVLCHLE--QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 474 AIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQ 525
            +  L  L  L L  NRL   A        P L  L+L    L     ++++
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 24/116 (20%)

Query: 849 IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL--------------------- 887
           +  +  +    +   +  L  +  L+LSHN L    P+L                     
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 888 IGNLREIESLDLSMNNLSGT-IPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFL 942
           + NL  ++ L L  N L  +     L S   L +LNL  N L        +L   L
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 47/337 (13%), Positives = 89/337 (26%), Gaps = 34/337 (10%)

Query: 153 LSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNL 212
           +  +L     ++E+ L G  I      W     +    L++   S  F     D     L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272
           R L    L    L++      A         +     H       L    L     +   
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 273 LLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDL 332
                L    +  +   L       + +   S+K      +    L              
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP-- 200

Query: 333 SQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNN 392
                 +   +     +      + L   D ++        +I  +   NL  + L+   
Sbjct: 201 ------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 254

Query: 393 LGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFE 452
           L      ++ +                     S   +  L TL L  N +E     +   
Sbjct: 255 LSARGAAAVVD-------------------AFSKLENIGLQTLRLQYNEIELDAVRTLKT 295

Query: 453 -----LKNLKILLLSSNKFVGTIELDAIQRLRNLFRL 484
                + +L  L L+ N+F  + E D +  +R +F  
Sbjct: 296 VIDEKMPDLLFLELNGNRF--SEEDDVVDEIREVFST 330

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 39/319 (12%), Positives = 79/319 (24%), Gaps = 27/319 (8%)

Query: 432 LDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKF--VGTIEL-DAIQRLRNLFRLDLSY 488
           L    ++  + +  +     E  ++K ++LS N         L + I   ++L   + S 
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 489 NRLAVVAGSSVYCFPPLLT-TLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLW 547
                V          LL   L         + +           +        + +   
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 548 KIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSG 607
                           L  L       +   L  +    N+++                 
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 608 NNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCL 667
           +             +   +    +      V+                     G     +
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-----------TFTHLGSSALAI 237

Query: 668 INMSDSQLGVLNLRRNNLNGTVSA------TFPANCSLRTLDLNGNQLEGMVPKSLA--- 718
              S   L  L L    L+   +A      +   N  L+TL L  N++E    ++L    
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 719 --NCSVLEILDLGNNQFDD 735
                 L  L+L  N+F +
Sbjct: 298 DEKMPDLLFLELNGNRFSE 316

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 33/324 (10%), Positives = 84/324 (25%), Gaps = 24/324 (7%)

Query: 639 IPESICNATNLLVLDLSYNYLSGMIPTCLINM--SDSQLGVLNLRRNNLNGTVSATFPAN 696
           +   +    ++  + LS N +       L     S   L +                 A 
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 697 CSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNN 756
             L    L   +L  +     A                +    ++   + L  L L +N 
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFG----------PTAQEPLIDFLSKHTPLEHLYLHNNG 132

Query: 757 FFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRF 816
                          +       +      +           M +  ++    + L    
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 192

Query: 817 LNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLS 876
           +  +    +    + ++GL     ++  +    +   +     +   +    +L  L L+
Sbjct: 193 MVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 877 HNALTGSIPSLIGN------LREIESLDLSMNNLSGTIPAQLAS-----LNFLSVLNLSY 925
              L+    + + +         +++L L  N +       L +     +  L  L L+ 
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 926 NHLVGRIPTSTQLQSFLATSFEGN 949
           N          +++   +T   G 
Sbjct: 312 NRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 43/308 (13%), Positives = 83/308 (26%), Gaps = 30/308 (9%)

Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHG----AFPEKILQLPTLETLDL 268
           +SL +  +   D    V   L +  ++  + LS   +         E I     LE  + 
Sbjct: 8   KSLKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 269 SYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTS 328
           S     +           L   +L       +                   + + P+   
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 329 MSDLSQLVYLDMSFNHFSGPIPSLHMF----RNLAYLDLSYNIFTGGISSIGWEQLLNLF 384
               + L     +    +    +++        L  +    N    G      +   +  
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 385 HVDLSHNNLGGSIPQ-----------SLFELPMVQHLLLADNQFDGHVTEISNASSSLLD 433
            +        G  P+              EL ++                I+  S   L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 434 TLDLSDNNLEGPIP------LSFFELKNLKILLLSSNKF----VGTIELDAIQRLRNLFR 483
            L L+D  L            S  E   L+ L L  N+     V T++    +++ +L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 484 LDLSYNRL 491
           L+L+ NR 
Sbjct: 307 LELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 47/348 (13%), Positives = 100/348 (28%), Gaps = 38/348 (10%)

Query: 262 TLETLDLSYNEL----LQGSLPDFHQNLSLETLILSATNFSG----ILPDSIKNLKNLSR 313
           ++E   L  + +     +       ++ S++ ++LS           L ++I + K+L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 314 VEF---YLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTG 370
            EF   +       IP ++  L Q +      +       +         +D        
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 371 GISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSS 430
               +    L       ++      ++ +     P ++ ++   N+ +    +    +  
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNR 490
               L        G  P                 + +    L   Q L+ L   D ++  
Sbjct: 184 SHRLLHTVKMVQNGIRP--------------EGIEHLLLEGLAYCQELKVLDLQDNTFTH 229

Query: 491 LAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--------LRKQTKLYHLDLSDNQISGEI 542
           L   A +      P L  L L  C LSA             +   L  L L  N+I  + 
Sbjct: 230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 289

Query: 543 PNWLWKIGKDSFN---HLNLSHNLLVSLEQPYSISDLTSLSVLDLHSN 587
              L  +  +       L L+ N     E+   + ++  +        
Sbjct: 290 VRTLKTVIDEKMPDLLFLELNGNRF--SEEDDVVDEIREVFSTRGRGE 335

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 3e-06
 Identities = 23/230 (10%), Positives = 51/230 (22%), Gaps = 4/230 (1%)

Query: 696 NCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN 755
           +CS R      +++   +P  L        L     +              L  + +  N
Sbjct: 7   HCSNRVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 756 NFFGNISCPRYNVSWPMLQIIDLA-SNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQY 814
           +    I    ++    + +I     +N           L     ++        L  +  
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 815 RFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALN 874
                                      +      +  ++N  +          Q      
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 875 LSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLS 924
             +N L      +         LD+S   +       L +L  L   +  
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 25/227 (11%), Positives = 52/227 (22%), Gaps = 2/227 (0%)

Query: 507 TTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVS 566
                   K++ IP+         L     ++           G      ++ +  L V 
Sbjct: 11  RVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 567 LEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT-SSIPVDIGSFMSLS 625
               +S         ++  +N +                  +N     +P          
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 626 IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNL 685
           +      N     I  +     +   + L  N                   +     NNL
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 686 NGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ 732
               +  F        LD++  ++  +    L N   L      N +
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 32/238 (13%), Positives = 56/238 (23%), Gaps = 8/238 (3%)

Query: 238 NLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLET---LILSA 294
           +          +    P  +        L     +L +                 +  + 
Sbjct: 9   SNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQND 64

Query: 295 TNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHM 354
                         K          N     P +  +L  L YL +S            +
Sbjct: 65  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 124

Query: 355 FRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLS-HNNLGGSIPQSLFELPMVQHLLLA 413
                 L    +              L+   V L  + N    I    F    +  L L+
Sbjct: 125 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS 184

Query: 414 DNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIE 471
           DN     +       +S    LD+S   +          LK L+     + K + T+E
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 242

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 39/247 (15%), Positives = 72/247 (29%), Gaps = 45/247 (18%)

Query: 435 LDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVV 494
           +    +N+   +  +  +L  +  L            ++ +Q L NL  L+L  N++   
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQI--- 75

Query: 495 AGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSF 554
                                L+ + NL K T+L         +S        K    + 
Sbjct: 76  -------------------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTS 116

Query: 555 NHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSI 614
             +     L                             I PL         S  N   S 
Sbjct: 117 TQITDVTPLAGLSNLQVLY-----------LDLNQITNISPLAGLTNLQYLSIGNAQVSD 165

Query: 615 PVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQ 674
              + +   L+       N ++ + P  + +  NL+ + L  N +S + P  L N   S 
Sbjct: 166 LTPLANLSKLTTLK-ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT--SN 218

Query: 675 LGVLNLR 681
           L ++ L 
Sbjct: 219 LFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 21/223 (9%)

Query: 678 LNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF 737
           +   ++N+  TV+        + TL   G  +  +  + +   + L  L+L +NQ  D  
Sbjct: 24  IAAGKSNVTDTVTQADLDG--ITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 738 PCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEA 797
           P           L          I+  +   +  +           +G    + L     
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 798 MMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFE 857
            + +               L            +T      KL       T++    N   
Sbjct: 140 QITNISP------LAGLTNLQYLSIGNAQVSDLTPLANLSKL-------TTLKADDNKIS 186

Query: 858 GPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLS 900
              P  +  L +L  ++L +N ++   P  + N   +  + L+
Sbjct: 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 22/234 (9%)

Query: 206 DPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLET 265
           DP+L+N   ++      +++   V    AD   +T+L     G+     E +  L  L  
Sbjct: 15  DPALANAIKIA---AGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIG 67

Query: 266 LDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPI 325
           L+L  N++   +       ++   L  +       +                        
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 326 PTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFH 385
            +++  L                I ++     L  L                  L  L  
Sbjct: 128 LSNLQVL----------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177

Query: 386 VDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSD 439
           +    N +    P  L  LP +  + L +NQ    V+ ++N S+  L  + L++
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISD-VSPLANTSN--LFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 40/241 (16%), Positives = 74/241 (30%), Gaps = 21/241 (8%)

Query: 295 TNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHM 354
           T  + I PD    L N  ++     N    +  +  DL  +  L       +  I  +  
Sbjct: 7   TAINVIFPD--PALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT-IEGVQY 61

Query: 355 FRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLAD 414
             NL  L+L  N                         NL       L   P+     +A 
Sbjct: 62  LNNLIGLELKDNQI----------------TDLAPLKNLTKITELELSGNPLKNVSAIAG 105

Query: 415 NQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDA 474
            Q    +   S   + +     LS+  +          +  L  L       +G  ++  
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD 165

Query: 475 IQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLS 534
           +  L NL +L         ++  S     P L  + L + ++S +  L   + L+ + L+
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

Query: 535 D 535
           +
Sbjct: 226 N 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 38/225 (16%), Positives = 68/225 (30%), Gaps = 28/225 (12%)

Query: 520 PNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSL 579
           P L    K+       + ++  +     +   D    L+     + ++E    +  L +L
Sbjct: 16  PALANAIKI---AAGKSNVTDTVT----QADLDGITTLSAFGTGVTTIE---GVQYLNNL 65

Query: 580 SVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVI 639
             L+L  NQI         N   +     +      V   + +        +   +T V 
Sbjct: 66  IGLELKDNQIT--DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSAT------- 692
           P +  +   +L LDL+       +         S           L      T       
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 693 -------FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGN 730
                    +  +L  + L  NQ+  + P  LAN S L I+ L N
Sbjct: 184 KISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 9/202 (4%)

Query: 70  IDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMT 129
           + ++ +   L  + +L+        T I  G+  L NL  L L +       P++     
Sbjct: 31  VTDTVTQADLDGITTLSAFGT--GVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKI 87

Query: 130 RLVTLDLSGMYFVRAPLKLENPNLSGLLQN--LAELRELYLDGVNISAPGIEWCQALSSL 187
             + L  + +  V A   L++     L             L  + +    +     +S L
Sbjct: 88  TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL 147

Query: 188 VPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSC 247
                +  LS           L+NL  L+ ++ D N +    P  LA   NL  ++L + 
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205

Query: 248 GLHGAFPEKILQLPTLETLDLS 269
            +    P  +     L  + L+
Sbjct: 206 QISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 41/268 (15%), Positives = 80/268 (29%), Gaps = 51/268 (19%)

Query: 324 PIPTSMSD--LSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSI-GWEQL 380
            I     D  L+  + +    ++ +  +    +   +  L         G+++I G + L
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVTQADL-DGITTLSAFGT----GVTTIEGVQYL 62

Query: 381 LNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDN 440
            NL  ++L  N +    P           L     +    +  + +              
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS-------------I 109

Query: 441 NLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVY 500
                      ++  L  L      ++   ++  I  L  L  L       A V+  +  
Sbjct: 110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL 169

Query: 501 CFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLS 560
                LTTL     K+S I  L     L  + L +NQIS   P                 
Sbjct: 170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP----------------- 212

Query: 561 HNLLVSLEQPYSISDLTSLSVLDLHSNQ 588
                       +++ ++L ++ L +NQ
Sbjct: 213 ------------LANTSNLFIVTL-TNQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 28/221 (12%), Positives = 63/221 (28%), Gaps = 21/221 (9%)

Query: 146 LKLENPNLSGL--LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSG 203
           +     N++      +L  +  L   G  ++   IE  Q L      L  L L    ++ 
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVT--TIEGVQYL----NNLIGLELKDNQITD 77

Query: 204 PVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTL 263
                     +   +  +     S +    +  +   +    +     A    +  L   
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 264 ETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNG 323
                + + L   +   +              N        + NL  L+ ++      + 
Sbjct: 138 LNQITNISPLAGLTNLQYLSI----------GNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 324 PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLS 364
             P  ++ L  L+ + +  N  S  +  L    NL  + L+
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLT 225

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 7/173 (4%)

Query: 229 VPEFLADFSNLTSLYLSSCGLHGAFPEKILQL-PTLETLDLSYNELLQGSLPDFHQNLSL 287
           +P  +    + T L L+   L     + +    P L  L+L  N+L       F     +
Sbjct: 23  IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 288 ETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSG 347
           + L L       I       L  L  +  Y    +  +P S   L+ L  L+++ N F+ 
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140

Query: 348 PIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQS 400
                     L    L+      G       ++ ++   DL H+    S   S
Sbjct: 141 NCHLAWFAEWLRKKSLNGGAARCGA----PSKVRDVQIKDLPHSEFKCSSENS 189

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 21/196 (10%)

Query: 300 ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLA 359
           I  D    L    +      N    +  S +DL Q+  L          I  +    NL 
Sbjct: 11  IFTD--TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS-IDGVEYLNNLT 65

Query: 360 YLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPM------------- 406
            ++ S N  T         +L+++   +    ++      +                   
Sbjct: 66  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 125

Query: 407 -VQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNK 465
            + +L   +   +      + +  + L  L+ S N +    PL+   L  L+ L +SSNK
Sbjct: 126 NLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLA--NLTTLERLDISSNK 183

Query: 466 FVGTIELDAIQRLRNL 481
                 L  +  L +L
Sbjct: 184 VSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 19/205 (9%)

Query: 206 DPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLET 265
           D +L+      + + ++ D  S       D   +T+L     G+     + +  L  L  
Sbjct: 14  DTALAEKMKTVLGKTNVTDTVS-----QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQ 66

Query: 266 LDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPI 325
           ++ S N+            L   T ++     +  + D        +     L N     
Sbjct: 67  INFSNNQ------LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 120

Query: 326 PTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFH 385
              + +L+ L  L++S N  S       +         S  +            L  L  
Sbjct: 121 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQV----TDLKPLANLTTLER 176

Query: 386 VDLSHNNLGGSIPQSLFELPMVQHL 410
           +D+S N +  S    L +L  ++ L
Sbjct: 177 LDISSNKV--SDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 18/174 (10%)

Query: 435 LDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVV 494
             L   N+   +  +  +L  +  L            +D ++ L NL +++ S N+L  +
Sbjct: 23  TVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTDI 77

Query: 495 AGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSF 554
                      +   +     ++ + NL   T L   +     I            + S 
Sbjct: 78  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 137

Query: 555 NHLNLSHNLLV------------SLEQPYSISDLTSLSVLDLHSNQIQGKIPPL 596
           N ++    L               +     +++LT+L  LD+ SN++   I  L
Sbjct: 138 NTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-ISVL 190

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 12/146 (8%)

Query: 516 LSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISD 575
           +          +   LDL   +I   I N       D F+ ++ S N +  L+       
Sbjct: 8   IEQAAQYTNAVRDRELDLRGYKIP-VIENLG--ATLDQFDAIDFSDNEIRKLD---GFPL 61

Query: 576 LTSLSVLDLHSNQIQGKIPPLP---PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFS- 631
           L  L  L +++N+I      L    P+   +  + N+      +D  + +    +     
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121

Query: 632 --KNSLTGVIPESICNATNLLVLDLS 655
               +        I     + VLD  
Sbjct: 122 NPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 29/205 (14%)

Query: 400 SLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKIL 459
            +F        +  + +       ++    + +D +  ++++++    + +  L N+  L
Sbjct: 16  QIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY--LPNVTKL 73

Query: 460 LLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAI 519
            L+ NK         I+ L NL  L   +     V   S       L +LSL    +S I
Sbjct: 74  FLNGNKLTD------IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI 127

Query: 520 PNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFN------------------HLNLSH 561
             L    +L  L L +N+I+                                  +L LS 
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK 187

Query: 562 NLLVSLEQPYSISDLTSLSVLDLHS 586
           N +  L    +++ L +L VL+L S
Sbjct: 188 NHISDLR---ALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 27/197 (13%), Positives = 58/197 (29%), Gaps = 22/197 (11%)

Query: 208 SLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLD 267
           S           L    +   V +   + +++  +  ++  +       I  LP +  L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLF 74

Query: 268 LSYNELLQ---------------GSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLS 312
           L+ N+L                         +   +   L + +        I  L +L 
Sbjct: 75  LNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 313 RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGI 372
           ++E      N     ++      +      ++    I  L     L  L LS N  +  +
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DL 193

Query: 373 SSIGWEQLLNLFHVDLS 389
            ++    L NL  ++L 
Sbjct: 194 RALA--GLKNLDVLELF 208

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1005
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.16
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.12
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.96
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.51
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.51
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.93
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.72

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.1e-37  Score=332.50  Aligned_cols=292  Identities=28%  Similarity=0.391  Sum_probs=176.7

Q ss_pred             CcHHHHHHHHHHhhhCCCCCCCcccccCCCCCCCCc--ccceeEECCC---CCEEEEEcCCCCcccccCCCccccccccc
Q 047927            8 CQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCC--TWSGVDCDEA---GRVIGLDLSEESISAGIDNSSSLFSLKYL   82 (1005)
Q Consensus         8 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~~~c--~w~gv~c~~~---~~v~~L~L~~~~l~~~~~~~~~l~~l~~L   82 (1005)
                      |.++||+||++||+++.+++    .+++|..+.|||  .|.||+|+..   +||++|||+++++.+....++.++++++|
T Consensus         3 c~~~e~~aLl~~k~~~~~~~----~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L   78 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT----TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG----GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCHHHHHHHHHHHHHCCCCC----cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccc
Confidence            99999999999999997642    689999889999  4999999865   48999999999998754336778888888


Q ss_pred             ceeecCC-ccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCc
Q 047927           83 QSLNLAF-NMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLA  161 (1005)
Q Consensus        83 ~~L~Ls~-~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~  161 (1005)
                      |+|+|++ |.+.+. +|..|+++++|++|+|++|++.+..|..+..+.+|++++++.|.+.....        ..+.++ 
T Consensus        79 ~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p--------~~l~~l-  148 (313)
T d1ogqa_          79 NFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP--------PSISSL-  148 (313)
T ss_dssp             SEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC--------GGGGGC-
T ss_pred             cccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccccCc--------hhhccC-
Confidence            8888875 667665 78888888888888888888877777777777777777777765422110        001111 


Q ss_pred             cCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCC-cEEECCCCCCCCCcchhccCCCCCc
Q 047927          162 ELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSL-SVIRLDMNDLYSPVPEFLADFSNLT  240 (1005)
Q Consensus       162 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L-~~L~l~~n~~~~~~p~~l~~l~~L~  240 (1005)
                                                 ++++++++++|.+.+.+|..+..+..+ +.+++++|.+.+..|..+..+..+ 
T Consensus       149 ---------------------------~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-  200 (313)
T d1ogqa_         149 ---------------------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-  200 (313)
T ss_dssp             ---------------------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-
T ss_pred             ---------------------------cccceeeccccccccccccccccccccccccccccccccccccccccccccc-
Confidence                                       344444444445555555555555443 455555555555555544444332 


Q ss_pred             EEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCc
Q 047927          241 SLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCN  320 (1005)
Q Consensus       241 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  320 (1005)
                      +++++.+...+.+|..+..+++++.+++++|.+ ...++.+..+++|+.|++++|++++.+|+.|+++++|++|++++|+
T Consensus       201 ~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l-~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            455555555555555555555555555555543 2223333334444444444444444444444444444444444444


Q ss_pred             cCCCCCccCCCCCCCcEEECcCC
Q 047927          321 FNGPIPTSMSDLSQLVYLDMSFN  343 (1005)
Q Consensus       321 ~~~~~~~~l~~l~~L~~L~L~~n  343 (1005)
                      ++|.+|. ++++++|+.+++++|
T Consensus       280 l~g~iP~-~~~L~~L~~l~l~~N  301 (313)
T d1ogqa_         280 LCGEIPQ-GGNLQRFDVSAYANN  301 (313)
T ss_dssp             EEEECCC-STTGGGSCGGGTCSS
T ss_pred             ccccCCC-cccCCCCCHHHhCCC
Confidence            4443332 233344444444444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.5e-33  Score=302.08  Aligned_cols=260  Identities=28%  Similarity=0.455  Sum_probs=201.6

Q ss_pred             ceEEEEecCCcccc--cCChhhhccCCCCeEEccC-ccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCcc
Q 047927          624 LSIFFSFSKNSLTG--VIPESICNATNLLVLDLSY-NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR  700 (1005)
Q Consensus       624 ~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  700 (1005)
                      .++.|++++|.++|  .+|..++++++|++|+|++ |+++|.+|..+.+++  +|++|+|++|++.+..+..+..+..|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~--~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT--TCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccccc--ccchhhhccccccccccccccchhhhc
Confidence            46777777777776  4677777777777777775 677777777777776  677777777776666666666666666


Q ss_pred             EEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccC
Q 047927          701 TLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS  780 (1005)
Q Consensus       701 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~  780 (1005)
                      ++++++|.+.+.+|..+..++.|+.+++++|++++.+|.++..+.++                         ++.+++++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l-------------------------~~~l~~~~  183 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-------------------------FTSMTISR  183 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT-------------------------CCEEECCS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccc-------------------------cccccccc
Confidence            66666666666666666666666666666666666555555544433                         25566666


Q ss_pred             CcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccC
Q 047927          781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPI  860 (1005)
Q Consensus       781 N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i  860 (1005)
                      |+++|..|..+.                                                  ......++++++.+.|.+
T Consensus       184 n~l~~~~~~~~~--------------------------------------------------~l~~~~l~l~~~~~~~~~  213 (313)
T d1ogqa_         184 NRLTGKIPPTFA--------------------------------------------------NLNLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             SEEEEECCGGGG--------------------------------------------------GCCCSEEECCSSEEEECC
T ss_pred             cccccccccccc--------------------------------------------------cccccccccccccccccc
Confidence            666666664321                                                  122356999999999999


Q ss_pred             cccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCCcccc
Q 047927          861 PEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQS  940 (1005)
Q Consensus       861 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~  940 (1005)
                      |..++.+++++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|++|+++++|++|||++|+|+|.||+...+..
T Consensus       214 ~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~  292 (313)
T d1ogqa_         214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR  292 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGG
T ss_pred             ccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCC
Confidence            9999999999999999999998776 589999999999999999999999999999999999999999999999888888


Q ss_pred             cccccccCCCCCCCCCCCCCC
Q 047927          941 FLATSFEGNDRLWGPPLNVCP  961 (1005)
Q Consensus       941 ~~~~~~~gn~~lc~~~~~~c~  961 (1005)
                      +....+.||+.+||.|++.|.
T Consensus       293 L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         293 FDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             SCGGGTCSSSEEESTTSSCCC
T ss_pred             CCHHHhCCCccccCCCCCCCC
Confidence            988999999999999998883

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.6e-25  Score=249.70  Aligned_cols=186  Identities=27%  Similarity=0.342  Sum_probs=123.5

Q ss_pred             cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecC
Q 047927          674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR  753 (1005)
Q Consensus       674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  753 (1005)
                      +++.+++++|.+++..|  +...++|++|++++|+++..  ..+..+++|+.|++++|++++..+  ++.+++|++|+++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~  271 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG  271 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeecc
Confidence            45555555555554433  23334555555555555532  245555666666666666655433  4555666666666


Q ss_pred             CCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEc
Q 047927          754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIK  833 (1005)
Q Consensus       754 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (1005)
                      +|++.+.    ..+..++.++.+++++|.+.+...                                             
T Consensus       272 ~~~l~~~----~~~~~~~~l~~l~~~~n~l~~~~~---------------------------------------------  302 (384)
T d2omza2         272 ANQISNI----SPLAGLTALTNLELNENQLEDISP---------------------------------------------  302 (384)
T ss_dssp             SSCCCCC----GGGTTCTTCSEEECCSSCCSCCGG---------------------------------------------
T ss_pred             CcccCCC----Cccccccccccccccccccccccc---------------------------------------------
Confidence            6665542    124455666666666666654211                                             


Q ss_pred             chHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCccccc
Q 047927          834 GLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLA  913 (1005)
Q Consensus       834 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~  913 (1005)
                            ...++.++.|++++|++++..|  +..+++|++|+|++|+|++ +| .++++++|++||+++|++++.+|  +.
T Consensus       303 ------~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~  370 (384)
T d2omza2         303 ------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LA  370 (384)
T ss_dssp             ------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GT
T ss_pred             ------cchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hc
Confidence                  0135667888999999887533  7889999999999999985 55 58999999999999999998765  88


Q ss_pred             CCCCCCeEEccCC
Q 047927          914 SLNFLSVLNLSYN  926 (1005)
Q Consensus       914 ~l~~L~~L~ls~N  926 (1005)
                      ++++|++|+|++|
T Consensus       371 ~l~~L~~L~L~~N  383 (384)
T d2omza2         371 NLTRITQLGLNDQ  383 (384)
T ss_dssp             TCTTCSEEECCCE
T ss_pred             cCCCCCEeeCCCC
Confidence            9999999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=1.6e-24  Score=241.49  Aligned_cols=195  Identities=26%  Similarity=0.326  Sum_probs=156.4

Q ss_pred             ChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccC
Q 047927          640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLAN  719 (1005)
Q Consensus       640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  719 (1005)
                      ...+..+++++.+++++|.+++..|  +....  +|+.|++++|++++.  +.+..+++|+.|++++|++++..  .+..
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~--~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~  261 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITP--LGILT--NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSG  261 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGG--GGGCT--TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTT
T ss_pred             ccccccccccceeeccCCccCCCCc--ccccC--CCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccc
Confidence            3456778888888888888886544  33444  788889988888764  35777888999999999888654  3778


Q ss_pred             CCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhh
Q 047927          720 CSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMM  799 (1005)
Q Consensus       720 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~  799 (1005)
                      +++|+.|++++|++++..+  +..++.++.+.+.+|++.+    ...+..+++++.|++++|++++..|.          
T Consensus       262 ~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~----~~~~~~~~~l~~L~ls~n~l~~l~~l----------  325 (384)
T d2omza2         262 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPV----------  325 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC----CGGGGGCTTCSEEECCSSCCSCCGGG----------
T ss_pred             cccCCEeeccCcccCCCCc--ccccccccccccccccccc----ccccchhcccCeEECCCCCCCCCccc----------
Confidence            8899999999999886543  6788889999999998876    34567788899999999998864321          


Q ss_pred             hccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCc
Q 047927          800 VDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNA  879 (1005)
Q Consensus       800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~  879 (1005)
                                                               ..+++|+.|++++|++++ +| .++++++|++|+|++|+
T Consensus       326 -----------------------------------------~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         326 -----------------------------------------SSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             -----------------------------------------GGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSC
T ss_pred             -----------------------------------------ccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCc
Confidence                                                     146789999999999985 44 69999999999999999


Q ss_pred             CcccCchhhhcCCCCCEEeCCCCc
Q 047927          880 LTGSIPSLIGNLREIESLDLSMNN  903 (1005)
Q Consensus       880 l~g~ip~~~~~l~~L~~LdLs~N~  903 (1005)
                      +++.+|  ++++++|+.|+|++|.
T Consensus       363 l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         363 ISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCChh--hccCCCCCEeeCCCCc
Confidence            997665  8999999999999984

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-24  Score=227.09  Aligned_cols=227  Identities=24%  Similarity=0.227  Sum_probs=167.7

Q ss_pred             EEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECC-C
Q 047927          652 LDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG-N  730 (1005)
Q Consensus       652 L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls-~  730 (1005)
                      ++.+++.++ .+|..+.  +  .+++|+|++|+|+.+.+.+|.++++|++|++++|++....+..+..++.++.++.. .
T Consensus        16 v~c~~~~L~-~iP~~ip--~--~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--A--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--T--TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCCCC-ccCCCCC--C--CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            344444444 4454332  1  56666666666666666667777777777777777776666666667777776654 4


Q ss_pred             CcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhc
Q 047927          731 NQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELK  810 (1005)
Q Consensus       731 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~  810 (1005)
                      |.++...|.+|.++++|++|++++|.+.+..  +......++|+.+++++|.+++..+..+                   
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~l~l~~N~l~~i~~~~f-------------------  149 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTF-------------------  149 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT-------------------
T ss_pred             cccccccchhhcccccCCEEecCCccccccc--ccccchhcccchhhhccccccccChhHh-------------------
Confidence            5566666667777777777777777765433  4455566777777777777764333211                   


Q ss_pred             hhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhc
Q 047927          811 HLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGN  890 (1005)
Q Consensus       811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  890 (1005)
                                                    ...+.++.|++++|++++..|..|.++++|+++++++|++++..|..|.+
T Consensus       150 ------------------------------~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~  199 (284)
T d1ozna_         150 ------------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD  199 (284)
T ss_dssp             ------------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ------------------------------ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhh
Confidence                                          13466788999999999888889999999999999999999999999999


Q ss_pred             CCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCC
Q 047927          891 LREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPT  934 (1005)
Q Consensus       891 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~  934 (1005)
                      +++|++||+++|++++..|..|+++++|++|++++|++.|.++.
T Consensus       200 l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             hhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            99999999999999999999999999999999999999987753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.4e-23  Score=221.21  Aligned_cols=252  Identities=19%  Similarity=0.203  Sum_probs=194.2

Q ss_pred             CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927          623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL  702 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  702 (1005)
                      +.+++|++++|+++...+..|.++++|++|++++|.+....|..|.+++  +|+.|++++|+++......+   ..++.|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~--~L~~L~l~~n~l~~l~~~~~---~~l~~L  105 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLKELPEKMP---KTLQEL  105 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEECCSSCCSBCCSSCC---TTCCEE
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC--ccCEecccCCccCcCccchh---hhhhhh
Confidence            4567777777777766666788888888888888888877777788877  88888888888876544322   467888


Q ss_pred             eCCCCeecccCcccccCCCCCCEEECCCCcCC--CCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccC
Q 047927          703 DLNGNQLEGMVPKSLANCSVLEILDLGNNQFD--DTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS  780 (1005)
Q Consensus       703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~  780 (1005)
                      ++.+|.+.+..+..+.....++.++...|...  ...+..+..+++|+.+++++|.+...   |..  ..++|+.|++++
T Consensus       106 ~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l---~~~--~~~~L~~L~l~~  180 (305)
T d1xkua_         106 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQG--LPPSLTELHLDG  180 (305)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC---CSS--CCTTCSEEECTT
T ss_pred             hccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc---Ccc--cCCccCEEECCC
Confidence            88888888777777788888888888887654  33456778888888888888887632   332  357888999998


Q ss_pred             CcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccC
Q 047927          781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPI  860 (1005)
Q Consensus       781 N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i  860 (1005)
                      |...+..|..+                                                 ..++.++.|++++|.+++..
T Consensus       181 n~~~~~~~~~~-------------------------------------------------~~~~~l~~L~~s~n~l~~~~  211 (305)
T d1xkua_         181 NKITKVDAASL-------------------------------------------------KGLNNLAKLGLSFNSISAVD  211 (305)
T ss_dssp             SCCCEECTGGG-------------------------------------------------TTCTTCCEEECCSSCCCEEC
T ss_pred             CcCCCCChhHh-------------------------------------------------hccccccccccccccccccc
Confidence            88877665322                                                 13566788999999999888


Q ss_pred             cccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCccc------ccCCCCCCeEEccCCccc-ccCC
Q 047927          861 PEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQ------LASLNFLSVLNLSYNHLV-GRIP  933 (1005)
Q Consensus       861 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~------l~~l~~L~~L~ls~N~l~-g~ip  933 (1005)
                      |..+.++++|++|+|++|+|+ .+|+.++++++|++|+|++|+|+...+..      +..+.+|+.|++++|+++ +.+|
T Consensus       212 ~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         212 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             cccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCC
Confidence            888999999999999999998 67888999999999999999998654333      345678899999999985 4555


Q ss_pred             C
Q 047927          934 T  934 (1005)
Q Consensus       934 ~  934 (1005)
                      .
T Consensus       291 ~  291 (305)
T d1xkua_         291 P  291 (305)
T ss_dssp             G
T ss_pred             H
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-23  Score=219.99  Aligned_cols=235  Identities=20%  Similarity=0.188  Sum_probs=161.5

Q ss_pred             CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeC-CCCeecccCcccccCCCCCCE
Q 047927          647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDL-NGNQLEGMVPKSLANCSVLEI  725 (1005)
Q Consensus       647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-~~N~l~~~~p~~l~~l~~L~~  725 (1005)
                      +++++|+|++|+|+...+..|.+++  +|++|++++|++....+..+..++.++.++. ..|.++...+..|.++++|++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~--~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACR--NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccc--cccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            4566666666666654445566665  6666666666666666666666666666654 345555555666677777777


Q ss_pred             EECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCc
Q 047927          726 LDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRS  805 (1005)
Q Consensus       726 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~  805 (1005)
                      |++++|.+....+..+...++|+.+++++|++++..  +..+..+++|+.|++++|++++..|..+              
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~--~~~f~~~~~L~~L~l~~N~l~~l~~~~f--------------  173 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNRISSVPERAF--------------  173 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCEECTTTT--------------
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccC--hhHhccccchhhcccccCcccccchhhh--------------
Confidence            777777766666666666677777777777766543  4455566677777777777764433211              


Q ss_pred             hhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCc
Q 047927          806 QSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIP  885 (1005)
Q Consensus       806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip  885 (1005)
                                                         ..+++|+.+++++|++++..|..|+++++|++||+++|++++..|
T Consensus       174 -----------------------------------~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         174 -----------------------------------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             -----------------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             -----------------------------------ccccccchhhhhhccccccChhHhhhhhhcccccccccccccccc
Confidence                                               135677888888888888888888999999999999999998888


Q ss_pred             hhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCC
Q 047927          886 SLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTS  935 (1005)
Q Consensus       886 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~  935 (1005)
                      ..|+++++|++|+|++|.+.+.-+.. .-...++.+....+++.|..|..
T Consensus       219 ~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~  267 (284)
T d1ozna_         219 EALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (284)
T ss_dssp             HHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             cccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchH
Confidence            88889999999999999888654421 11223456677778888877754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=3.6e-22  Score=214.06  Aligned_cols=284  Identities=15%  Similarity=0.164  Sum_probs=225.2

Q ss_pred             cccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCc
Q 047927          578 SLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN  657 (1005)
Q Consensus       578 ~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N  657 (1005)
                      ..+.++.+++.++...+..+.++++|++++|+++. +|...+..++.|++|++++|.+....|..|.++++|+.|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCC-cChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            45667777777764433456678888888888774 44444446889999999999999888999999999999999999


Q ss_pred             cccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec--ccCcccccCCCCCCEEECCCCcCCC
Q 047927          658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE--GMVPKSLANCSVLEILDLGNNQFDD  735 (1005)
Q Consensus       658 ~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~  735 (1005)
                      +++ .+|..+..    .++.|++.+|.+.+..+..+.....++.++...|...  ...+..+..+++|+.+++++|.++.
T Consensus        90 ~l~-~l~~~~~~----~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          90 QLK-ELPEKMPK----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             CCS-BCCSSCCT----TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             ccC-cCccchhh----hhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            998 46654432    7899999999999988888888889999999988654  3446678899999999999999985


Q ss_pred             CcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhhe
Q 047927          736 TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYR  815 (1005)
Q Consensus       736 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~  815 (1005)
                       +|..  .+++|+.|++++|...+..  +..+..++.++.|++++|.+.+..|..+                        
T Consensus       165 -l~~~--~~~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~L~~s~n~l~~~~~~~~------------------------  215 (305)
T d1xkua_         165 -IPQG--LPPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSL------------------------  215 (305)
T ss_dssp             -CCSS--CCTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTG------------------------
T ss_pred             -cCcc--cCCccCEEECCCCcCCCCC--hhHhhccccccccccccccccccccccc------------------------
Confidence             4443  3689999999999998776  7788899999999999999987555321                        


Q ss_pred             ecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh------hh
Q 047927          816 FLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL------IG  889 (1005)
Q Consensus       816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~------~~  889 (1005)
                                               ..+++|++|+|++|+++ .+|++|..+++|++|+|++|+|+..-...      ..
T Consensus       216 -------------------------~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~  269 (305)
T d1xkua_         216 -------------------------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT  269 (305)
T ss_dssp             -------------------------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred             -------------------------cccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhc
Confidence                                     14678999999999998 67999999999999999999999532222      34


Q ss_pred             cCCCCCEEeCCCCcCc--ccCcccccCCCCCCeEE
Q 047927          890 NLREIESLDLSMNNLS--GTIPAQLASLNFLSVLN  922 (1005)
Q Consensus       890 ~l~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~  922 (1005)
                      .+.+|+.|+|++|.++  ...|..|.-+.....++
T Consensus       270 ~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~~  304 (305)
T d1xkua_         270 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  304 (305)
T ss_dssp             TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             ccCCCCEEECCCCcCccCcCCHhHhcccccCcccc
Confidence            6788999999999986  34555666555444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.7e-22  Score=205.37  Aligned_cols=203  Identities=23%  Similarity=0.227  Sum_probs=142.2

Q ss_pred             cCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCE
Q 047927          646 ATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEI  725 (1005)
Q Consensus       646 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  725 (1005)
                      ...+.+.|.+++.++ .+|..+.  +  ++++|+|++|+|++..+..|.++++|++|+|++|+++.. | .+..+++|++
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~--~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~   81 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--K--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGT   81 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--T--TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--c--CCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccc
Confidence            445556677777776 4565442  1  566666666666666666666666666666666666632 2 2455666666


Q ss_pred             EECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCc
Q 047927          726 LDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRS  805 (1005)
Q Consensus       726 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~  805 (1005)
                      |++++|++++ .+..+..+++|++|++++|++.+..  +....                                     
T Consensus        82 L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~-------------------------------------  121 (266)
T d1p9ag_          82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLP--LGALR-------------------------------------  121 (266)
T ss_dssp             EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCC--SSTTT-------------------------------------
T ss_pred             cccccccccc-cccccccccccccccccccccceee--ccccc-------------------------------------
Confidence            6666666653 2344555555555555555443211  11111                                     


Q ss_pred             hhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCc
Q 047927          806 QSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIP  885 (1005)
Q Consensus       806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip  885 (1005)
                                                          .+..+..|++++|.+++..|..+..++.|+.|++++|++++..|
T Consensus       122 ------------------------------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_         122 ------------------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             ------------------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             ------------------------------------cccccccccccccccceeccccccccccchhcccccccccccCc
Confidence                                                24566778888888887777788889999999999999998888


Q ss_pred             hhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccC
Q 047927          886 SLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRI  932 (1005)
Q Consensus       886 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i  932 (1005)
                      ..++.+++|++|||++|+|+ .+|+++..+++|+.|+|++|++.|.+
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             cccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            88999999999999999999 88999999999999999999998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-20  Score=194.96  Aligned_cols=209  Identities=21%  Similarity=0.251  Sum_probs=180.0

Q ss_pred             CcccEEEeccCcccccCC-CCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEcc
Q 047927          577 TSLSVLDLHSNQIQGKIP-PLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLS  655 (1005)
Q Consensus       577 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls  655 (1005)
                      ..+.+++.+++.++. +| ..+.++++|++++|++++ +|...+..+++|++|++++|+++.. | .+..+++|++|+++
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp~~l~~L~Ls~N~i~~-l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCe-eCcCcCcCCCEEECcCCcCCC-cCHHHhhcccccccccccccccccc-c-cccccccccccccc
Confidence            456667888888775 44 456678888888888875 4544455689999999999999854 3 35789999999999


Q ss_pred             CccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCC
Q 047927          656 YNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD  735 (1005)
Q Consensus       656 ~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  735 (1005)
                      +|+++ ..+..+..++  +|+.|++++|.+.+..+..+..+.++++|++++|.++...+..+..+++|+.+++++|++++
T Consensus        86 ~N~l~-~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          86 HNQLQ-SLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             SSCCS-SCCCCTTTCT--TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccc-cccccccccc--ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            99998 4577788887  99999999999999999999999999999999999998888899999999999999999999


Q ss_pred             CcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhh
Q 047927          736 TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL  795 (1005)
Q Consensus       736 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l  795 (1005)
                      ..+..|+.+++|++|+|++|+++ .+  |..+..+++|+.|+|++|++.+.+...|+..|
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~l--p~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~w  219 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TI--PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW  219 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CC--CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHH
T ss_pred             cCccccccccccceeecccCCCc-cc--ChhHCCCCCCCEEEecCCCCCCCcchHHHHHH
Confidence            99999999999999999999998 55  88889999999999999999987765555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=5.8e-17  Score=177.26  Aligned_cols=95  Identities=22%  Similarity=0.411  Sum_probs=58.1

Q ss_pred             CCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeC
Q 047927          480 NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNL  559 (1005)
Q Consensus       480 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L  559 (1005)
                      ++++|+++++.++.+|+     .++.|++|++++|+|+++|..  ..+|+.|++++|.++ .++..     ...|++|++
T Consensus        39 ~l~~LdLs~~~L~~lp~-----~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~-~l~~l-----p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE-----LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLK-ALSDL-----PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSCCCS-----CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCS-CCCSC-----CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCCCCC-----CCCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccc-hhhhh-----ccccccccc
Confidence            46666666666655542     245577777777777777652  346777777777766 33321     134667777


Q ss_pred             CCCcccCCCCCCccccCCcccEEEeccCccc
Q 047927          560 SHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ  590 (1005)
Q Consensus       560 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  590 (1005)
                      ++|.+..++.   +..+++|+.+++++|.+.
T Consensus       106 ~~n~l~~lp~---~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         106 SNNQLEKLPE---LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CSSCCSSCCC---CTTCTTCCEEECCSSCCS
T ss_pred             cccccccccc---hhhhccceeecccccccc
Confidence            7777666542   345667777777777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=8e-17  Score=176.10  Aligned_cols=303  Identities=24%  Similarity=0.335  Sum_probs=153.9

Q ss_pred             ceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCc
Q 047927          527 KLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS  606 (1005)
Q Consensus       527 ~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls  606 (1005)
                      ++++||++++.++ .+|+.     .+.+++|++++|+|+.++..     ..+|+.|++++|+++ .++..++.       
T Consensus        39 ~l~~LdLs~~~L~-~lp~~-----~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~l~~n~l~-~l~~lp~~-------   99 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL-----PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLK-ALSDLPPL-------   99 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC-----CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCS-CCCSCCTT-------
T ss_pred             CCCEEEeCCCCCC-CCCCC-----CCCCCEEECCCCCCcccccc-----hhhhhhhhhhhcccc-hhhhhccc-------
Confidence            5667777777776 45642     23466666666666665422     245666666666654 23333334       


Q ss_pred             CCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCC
Q 047927          607 GNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLN  686 (1005)
Q Consensus       607 ~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~  686 (1005)
                                        |++|++++|.+.. +|. +..+++|+.|++++|.+... +...   .  .+..+.+.++...
T Consensus       100 ------------------L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~~~---~--~l~~l~~~~~~~~  153 (353)
T d1jl5a_         100 ------------------LEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PDLP---P--SLEFIAAGNNQLE  153 (353)
T ss_dssp             ------------------CCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CCCC---T--TCCEEECCSSCCS
T ss_pred             ------------------ccccccccccccc-ccc-hhhhccceeecccccccccc-cccc---c--cccchhhcccccc
Confidence                              4455555555442 232 34555666666666555422 2111   1  3445555444433


Q ss_pred             ccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC
Q 047927          687 GTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY  766 (1005)
Q Consensus       687 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  766 (1005)
                      .  ...+..++.++.+++++|..... +.   .....+.+..+++.+.. +| .+..++.|+.+++++|.....   +  
T Consensus       154 ~--~~~l~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~~-~~-~~~~l~~L~~l~l~~n~~~~~---~--  220 (353)
T d1jl5a_         154 E--LPELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKTL---P--  220 (353)
T ss_dssp             S--CCCCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC---C--
T ss_pred             c--cccccccccceeccccccccccc-cc---ccccccccccccccccc-cc-ccccccccccccccccccccc---c--
Confidence            2  23344555556666666555422 11   11223344444444331 22 134455555555555544321   1  


Q ss_pred             CCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccc
Q 047927          767 NVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF  846 (1005)
Q Consensus       767 ~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  846 (1005)
                       ....++..+++.++.+....+.  ...+..                   .......+.     .+.       ......
T Consensus       221 -~~~~~l~~~~~~~~~~~~~~~~--~~~l~~-------------------~~~~~~~~~-----~l~-------~l~~~~  266 (353)
T d1jl5a_         221 -DLPPSLEALNVRDNYLTDLPEL--PQSLTF-------------------LDVSENIFS-----GLS-------ELPPNL  266 (353)
T ss_dssp             -SCCTTCCEEECCSSCCSCCCCC--CTTCCE-------------------EECCSSCCS-----EES-------CCCTTC
T ss_pred             -cccccccccccccccccccccc--cccccc-------------------ccccccccc-----ccc-------cccchh
Confidence             1233444555555554322110  000000                   000000000     000       001223


Q ss_pred             eEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCC
Q 047927          847 TSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN  926 (1005)
Q Consensus       847 ~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N  926 (1005)
                      ...+++.+.+.+.    ...+++|++|+|++|+|+ .+|..   +++|+.|+|++|+|+ .+|+.   +++|++|++++|
T Consensus       267 ~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N  334 (353)
T d1jl5a_         267 YYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN  334 (353)
T ss_dssp             CEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSS
T ss_pred             cccccccCccccc----cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCC
Confidence            4566666666543    234678899999999998 67754   568889999999998 56754   457889999999


Q ss_pred             cccccCCC
Q 047927          927 HLVGRIPT  934 (1005)
Q Consensus       927 ~l~g~ip~  934 (1005)
                      +|+ .+|.
T Consensus       335 ~L~-~lp~  341 (353)
T d1jl5a_         335 PLR-EFPD  341 (353)
T ss_dssp             CCS-SCCC
T ss_pred             cCC-CCCc
Confidence            987 4564

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=9.1e-18  Score=170.38  Aligned_cols=204  Identities=17%  Similarity=0.237  Sum_probs=138.4

Q ss_pred             eEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCC
Q 047927          651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGN  730 (1005)
Q Consensus       651 ~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  730 (1005)
                      .++++.+++++.+  .+..+.  +|+.|++.+|.++..  +++..+++|++|++++|++++..|  +..+++|+++++++
T Consensus        23 ~~~l~~~~~~d~~--~~~~l~--~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          23 KIAAGKSNVTDTV--TQADLD--GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (227)
T ss_dssp             HHHTTCSSTTSEE--CHHHHH--TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHhCCCCcCCcC--CHHHcC--CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence            3445555555432  233444  566666666666643  245666667777777776665433  66667777777777


Q ss_pred             CcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhc
Q 047927          731 NQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELK  810 (1005)
Q Consensus       731 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~  810 (1005)
                      |.++..  ..++.+++|+.+++++|...+.    ..+...+.++.+.++++.+....+.                     
T Consensus        95 n~~~~i--~~l~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~---------------------  147 (227)
T d1h6ua2          95 NPLKNV--SAIAGLQSIKTLDLTSTQITDV----TPLAGLSNLQVLYLDLNQITNISPL---------------------  147 (227)
T ss_dssp             CCCSCC--GGGTTCTTCCEEECTTSCCCCC----GGGTTCTTCCEEECCSSCCCCCGGG---------------------
T ss_pred             cccccc--cccccccccccccccccccccc----chhccccchhhhhchhhhhchhhhh---------------------
Confidence            766642  2456677777777777766542    2344566677777777766533221                     


Q ss_pred             hhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhc
Q 047927          811 HLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGN  890 (1005)
Q Consensus       811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~  890 (1005)
                                                    ...+.++.|++++|.+++..  .++++++|++|||++|++++ +|. +++
T Consensus       148 ------------------------------~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~  193 (227)
T d1h6ua2         148 ------------------------------AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LAS  193 (227)
T ss_dssp             ------------------------------GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGG
T ss_pred             ------------------------------ccccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcC
Confidence                                          13566888999999887543  38899999999999999985 554 899


Q ss_pred             CCCCCEEeCCCCcCcccCcccccCCCCCCeEEccC
Q 047927          891 LREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSY  925 (1005)
Q Consensus       891 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  925 (1005)
                      +++|++|+|++|++++..|  ++++++|++||+++
T Consensus       194 l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            9999999999999996543  88999999999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.6e-19  Score=202.89  Aligned_cols=244  Identities=19%  Similarity=0.145  Sum_probs=155.0

Q ss_pred             hhccCCCCeEEccCcccccc----CCchhhhcCcccccEEECCCCcCCccc----cCccCCCCCccEEeCCCCeecc---
Q 047927          643 ICNATNLLVLDLSYNYLSGM----IPTCLINMSDSQLGVLNLRRNNLNGTV----SATFPANCSLRTLDLNGNQLEG---  711 (1005)
Q Consensus       643 l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~---  711 (1005)
                      +.....++.++++++.....    ....+..... ....+++..+.+....    ...+...+.++.+++.+|.+..   
T Consensus       165 l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~  243 (460)
T d1z7xw1         165 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  243 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccc-cccccccccccccchhhhcccccccccccccccchhhcccccccc
Confidence            44556677777777665421    1111111111 4556777776654321    1223345677888888887643   


Q ss_pred             --cCcccccCCCCCCEEECCCCcCCCC----cchhhhcCCCCcEEecCCCcCCcccC--CCC-CCCCCCCccEEEccCCc
Q 047927          712 --MVPKSLANCSVLEILDLGNNQFDDT----FPCWVKNASRLHVLILRSNNFFGNIS--CPR-YNVSWPMLQIIDLASNK  782 (1005)
Q Consensus       712 --~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~--~~~-~~~~l~~L~~L~ls~N~  782 (1005)
                        ..+........++.+++++|.+...    ...++...+.++.+++++|.+.....  ... .......|+.+++++|.
T Consensus       244 ~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~  323 (460)
T d1z7xw1         244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  323 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             chhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence              2334455667888888888887643    23345667888888888887753210  000 11234578888888888


Q ss_pred             ccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeecc---
Q 047927          783 FSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGP---  859 (1005)
Q Consensus       783 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~---  859 (1005)
                      ++......+.                                             ......+.|++|||++|++++.   
T Consensus       324 l~~~~~~~l~---------------------------------------------~~~~~~~~L~~L~Ls~N~i~~~g~~  358 (460)
T d1z7xw1         324 FTAACCSHFS---------------------------------------------SVLAQNRFLLELQISNNRLEDAGVR  358 (460)
T ss_dssp             CBGGGHHHHH---------------------------------------------HHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             hhhhhhhhcc---------------------------------------------cccccccchhhhheeeecccCcccc
Confidence            7643221110                                             1122456789999999999753   


Q ss_pred             -Cccccc-CCCCCCEEECCCCcCcc----cCchhhhcCCCCCEEeCCCCcCcccCcccc----c-CCCCCCeEEccCCcc
Q 047927          860 -IPEEMG-LLQSLCALNLSHNALTG----SIPSLIGNLREIESLDLSMNNLSGTIPAQL----A-SLNFLSVLNLSYNHL  928 (1005)
Q Consensus       860 -ip~~~~-~l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l----~-~l~~L~~L~ls~N~l  928 (1005)
                       +++.+. ..+.|++|+|++|+|+.    .+++.+...++|++|||++|+|+......+    . +-+.|+.|++++|++
T Consensus       359 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             hhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence             444454 46789999999999985    356667788999999999999987544443    2 445799999999998


Q ss_pred             cccC
Q 047927          929 VGRI  932 (1005)
Q Consensus       929 ~g~i  932 (1005)
                      +...
T Consensus       439 ~~~~  442 (460)
T d1z7xw1         439 SEEM  442 (460)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            7643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.1e-16  Score=162.23  Aligned_cols=202  Identities=20%  Similarity=0.293  Sum_probs=146.2

Q ss_pred             EecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCe
Q 047927          629 SFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQ  708 (1005)
Q Consensus       629 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  708 (1005)
                      +++.+++++.+  .+..+.+|+.|++++|.++. + +.+..++  +|++|++++|++++..+  +..+++|+++++++|.
T Consensus        25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~--~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLN--NLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCT--TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCC--CCcEeecCCceeecccc--cccccccccccccccc
Confidence            34445555443  34566777788888887774 3 3466776  78888888888776554  6777788888888887


Q ss_pred             ecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCC
Q 047927          709 LEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP  788 (1005)
Q Consensus       709 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p  788 (1005)
                      ++..  ..+..+++|+.+++++|...+..+  +...+.+..+.++++.+...    ..+...++|+.|++++|.+.+..+
T Consensus        97 ~~~i--~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~  168 (227)
T d1h6ua2          97 LKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI----SPLAGLTNLQYLSIGNAQVSDLTP  168 (227)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCC----GGGGGCTTCCEEECCSSCCCCCGG
T ss_pred             cccc--ccccccccccccccccccccccch--hccccchhhhhchhhhhchh----hhhccccccccccccccccccchh
Confidence            7743  357778888888888887765433  56677788888888877642    335667788888888887764222


Q ss_pred             hHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCC
Q 047927          789 QKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQ  868 (1005)
Q Consensus       789 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~  868 (1005)
                                                                         +..+++|+.|||++|++++ +|+ +++++
T Consensus       169 ---------------------------------------------------l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~  195 (227)
T d1h6ua2         169 ---------------------------------------------------LANLSKLTTLKADDNKISD-ISP-LASLP  195 (227)
T ss_dssp             ---------------------------------------------------GTTCTTCCEEECCSSCCCC-CGG-GGGCT
T ss_pred             ---------------------------------------------------hcccccceecccCCCccCC-Chh-hcCCC
Confidence                                                               0135778999999999986 443 88999


Q ss_pred             CCCEEECCCCcCcccCchhhhcCCCCCEEeCCC
Q 047927          869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSM  901 (1005)
Q Consensus       869 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~  901 (1005)
                      +|++|+|++|++++ +|. ++++++|++|++++
T Consensus       196 ~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         196 NLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             CCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            99999999999995 543 88999999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.5e-16  Score=158.66  Aligned_cols=76  Identities=28%  Similarity=0.370  Sum_probs=53.4

Q ss_pred             ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927          844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL  923 (1005)
Q Consensus       844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l  923 (1005)
                      +.++.+++++|.+++  +..+..+++|+++++++|++++ ++. ++++++|+.|||++|+++. +| .+.++++|++|+|
T Consensus       134 ~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         134 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred             ccccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEc
Confidence            445556666666553  2345667788888888888875 333 7788888888888888874 45 4888888888888


Q ss_pred             cC
Q 047927          924 SY  925 (1005)
Q Consensus       924 s~  925 (1005)
                      ++
T Consensus       208 s~  209 (210)
T d1h6ta2         208 FS  209 (210)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2.1e-17  Score=162.37  Aligned_cols=135  Identities=25%  Similarity=0.297  Sum_probs=82.6

Q ss_pred             eEEccCccccccCCchhhhcCcccccEEECCCCcCCc-cccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECC
Q 047927          651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNG-TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG  729 (1005)
Q Consensus       651 ~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  729 (1005)
                      .++.++++++ .+|..+.  .  ++++|+|++|+|++ ..+..|.++++|++|+|++|++.+..+..|..+++|++|+|+
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~--~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--L--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--T--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             EEEEeCCCcC-ccCCCCC--C--CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4555555555 4454332  1  56666666666654 334455666666666666666666666666666666666666


Q ss_pred             CCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHH
Q 047927          730 NNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWL  792 (1005)
Q Consensus       730 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~  792 (1005)
                      +|+++.+.|.+|.++++|++|+|++|++++..  +..+..+++|+++++++|++.+..+..++
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~--~~~f~~l~~L~~l~L~~N~~~~~~~~~~~  147 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWF  147 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccC--HHHhcCCcccccccccccccccccchHHH
Confidence            66666666666666666666666666666543  45566667777777777777666554443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.7e-17  Score=167.95  Aligned_cols=221  Identities=12%  Similarity=0.025  Sum_probs=129.1

Q ss_pred             CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccC-cccccCCCCCCEEEC
Q 047927          650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMV-PKSLANCSVLEILDL  728 (1005)
Q Consensus       650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L  728 (1005)
                      +.++.++..++ .+|+.+.  .  ++++|++++|+++...+.+|.++++|++|++++|.+.+.+ +..|.+++.++++++
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~--~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--R--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--S--CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--C--CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            44555555555 4444332  1  5566666666666555555666666666666666655432 345666666666665


Q ss_pred             CC-CcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927          729 GN-NQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS  807 (1005)
Q Consensus       729 s~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~  807 (1005)
                      .. |.+....+.+|.++++|+.+++++|++.... .......++.+..+..+++.+... +...+.              
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~-~~~~~~~l~~l~~~~~~n~~l~~i-~~~~~~--------------  149 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTI-ERNSFV--------------  149 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCC-CCTTTCBSSCEEEEEESCTTCCEE-CTTSST--------------
T ss_pred             cccccccccccccccccccccccccchhhhcccc-cccccccccccccccccccccccc-cccccc--------------
Confidence            43 4555555666666666666666666664321 122233344444444455444321 111000              


Q ss_pred             hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCC-EEECCCCcCcccCch
Q 047927          808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLC-ALNLSHNALTGSIPS  886 (1005)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~-~L~Ls~N~l~g~ip~  886 (1005)
                                                       +....++.|++++|+++...+..+. ..+++ .+++++|+++...+.
T Consensus       150 ---------------------------------~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~  195 (242)
T d1xwdc1         150 ---------------------------------GLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPND  195 (242)
T ss_dssp             ---------------------------------TSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTT
T ss_pred             ---------------------------------cccccceeeeccccccccccccccc-chhhhccccccccccccccHH
Confidence                                             0123467788888888854444443 44444 446778888844344


Q ss_pred             hhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccC
Q 047927          887 LIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSY  925 (1005)
Q Consensus       887 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~  925 (1005)
                      .|.++++|++|||++|+|+...+..|.+++.|+++++++
T Consensus       196 ~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             HhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            578889999999999999866666788888888777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.7e-16  Score=154.95  Aligned_cols=163  Identities=23%  Similarity=0.290  Sum_probs=94.3

Q ss_pred             cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecC
Q 047927          674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR  753 (1005)
Q Consensus       674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  753 (1005)
                      +|+.|++++|.++...  ++..+++|++|++++|++++..  .+..+++|++|++++|++++ +| .+..+++|+.|+++
T Consensus        47 ~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccccc
Confidence            3444444444444321  2344445555555555554322  23445555555555555543 22 24455555555555


Q ss_pred             CCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEc
Q 047927          754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIK  833 (1005)
Q Consensus       754 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (1005)
                      +|.+..    ...+..++.++.+++++|.+++..+.                                            
T Consensus       121 ~~~~~~----~~~l~~l~~l~~l~~~~n~l~~~~~~--------------------------------------------  152 (210)
T d1h6ta2         121 HNGISD----INGLVHLPQLESLYLGNNKITDITVL--------------------------------------------  152 (210)
T ss_dssp             TSCCCC----CGGGGGCTTCCEEECCSSCCCCCGGG--------------------------------------------
T ss_pred             cccccc----cccccccccccccccccccccccccc--------------------------------------------
Confidence            555432    22344555556666666655431110                                            


Q ss_pred             chHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCC
Q 047927          834 GLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSM  901 (1005)
Q Consensus       834 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~  901 (1005)
                             ..+++|+.+++++|++++ ++ .++++++|+.|+|++|+++ .+| .+.++++|++|+|++
T Consensus       153 -------~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         153 -------SRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -------GGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             -------cccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence                   135667888888888875 33 3888999999999999998 466 589999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.4e-16  Score=152.56  Aligned_cols=72  Identities=35%  Similarity=0.449  Sum_probs=45.3

Q ss_pred             ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 047927          844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVL  921 (1005)
Q Consensus       844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  921 (1005)
                      ++|+.|++++|++.. +| .+..+++|+.|++++|++++. + .++++++|+.||+++|++++ +| .++++++|+.|
T Consensus       128 ~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            445555555555542 22 466677777777777777743 3 26777777777777777764 33 46667777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.3e-18  Score=196.22  Aligned_cols=120  Identities=23%  Similarity=0.231  Sum_probs=58.6

Q ss_pred             CEEEEEcCCCCcccccCCCcccccccccceeecCCccCCCC---CCCCcccCCCCCcEEEcccCCCcCC----Cccccc-
Q 047927           55 RVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNAT---EIPSGLGNLTNLTTLNLSNAGFAGQ----IPIQVS-  126 (1005)
Q Consensus        55 ~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~---~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~~l~-  126 (1005)
                      .|+.||++++.+.+.. ...-+..++++|+|+|++|.++..   .++..+..+++|++|||++|.+...    +...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~-~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHH-HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            3566666666665421 012244556666666666655421   1233445566666666666655321    111111 


Q ss_pred             CCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhh
Q 047927          127 GMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIE  179 (1005)
Q Consensus       127 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  179 (1005)
                      ...+|++|++++|.+++...    ..+...+..+++|++|++++|.+...+..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~----~~l~~~l~~~~~L~~L~L~~N~i~~~~~~  130 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGC----GVLSSTLRTLPTLQELHLSDNLLGDAGLQ  130 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGH----HHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred             CCCCCCEEECCCCCcccccc----ccccchhhccccccccccccccchhhhhh
Confidence            12356666666665443221    11223345555666666666655544333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=1.8e-16  Score=155.57  Aligned_cols=157  Identities=23%  Similarity=0.304  Sum_probs=123.2

Q ss_pred             CceEEEEecCCccccc-CChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccE
Q 047927          623 SLSIFFSFSKNSLTGV-IPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT  701 (1005)
Q Consensus       623 ~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  701 (1005)
                      +.+++|++++|++++. .+..|..+++|+.|+|++|++.+..+..+..+.  +|++|+|++|+++++.+.+|.++++|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~--~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--HIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc--ccceeeeccccccccCHHHHhCCCcccc
Confidence            4566777777777653 356678899999999999999988888888887  8999999999999988899999999999


Q ss_pred             EeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccC
Q 047927          702 LDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS  780 (1005)
Q Consensus       702 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~  780 (1005)
                      |+|++|+|+++.|++|..+++|++|+|++|++....+ .|+.  ..++.+.+..+.+.+..  |.   .+..++.+|++.
T Consensus       107 L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~--p~---~l~~~~l~~L~~  179 (192)
T d1w8aa_         107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA--PS---KVRDVQIKDLPH  179 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS--ST---TTTTSBGGGSCT
T ss_pred             cccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCC--Ch---hhcCCEeeecCH
Confidence            9999999998888899999999999999999886433 2332  23556677777776543  43   345567778888


Q ss_pred             CcccccCC
Q 047927          781 NKFSGRLP  788 (1005)
Q Consensus       781 N~~~~~~p  788 (1005)
                      |.|.+.-+
T Consensus       180 n~l~C~~~  187 (192)
T d1w8aa_         180 SEFKCSSE  187 (192)
T ss_dssp             TTCCCCCC
T ss_pred             hhCcCCCC
Confidence            88876544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.5e-15  Score=148.23  Aligned_cols=159  Identities=25%  Similarity=0.305  Sum_probs=92.7

Q ss_pred             cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecC
Q 047927          674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR  753 (1005)
Q Consensus       674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  753 (1005)
                      ++++|++++|.++..  +++..+++|++|++++|++++..|  +.++++|++|++++|.+....  .++++++|+.|+++
T Consensus        41 ~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--cccccccccccccc
Confidence            444444444444432  224444555555555555554322  555555555555555554322  24555555555555


Q ss_pred             CCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEc
Q 047927          754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIK  833 (1005)
Q Consensus       754 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  833 (1005)
                      +|.+..    ...+..+++|+.+++++|++.. +|. +                                          
T Consensus       115 ~~~~~~----~~~~~~l~~L~~L~l~~n~l~~-~~~-l------------------------------------------  146 (199)
T d2omxa2         115 NNQITD----IDPLKNLTNLNRLELSSNTISD-ISA-L------------------------------------------  146 (199)
T ss_dssp             SSCCCC----CGGGTTCTTCSEEECCSSCCCC-CGG-G------------------------------------------
T ss_pred             cccccc----ccccchhhhhHHhhhhhhhhcc-ccc-c------------------------------------------
Confidence            555543    2234455666666666665542 110 0                                          


Q ss_pred             chHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEE
Q 047927          834 GLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESL  897 (1005)
Q Consensus       834 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~L  897 (1005)
                             ..++.++.|++++|++++. + .++++++|++|++++|+++. +| .++++++|+.|
T Consensus       147 -------~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         147 -------SGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             -------TTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             -------cccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence                   1345677788888888754 3 38899999999999999985 55 48889999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=7.5e-16  Score=158.04  Aligned_cols=218  Identities=14%  Similarity=0.108  Sum_probs=143.9

Q ss_pred             EEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccc-cCccCCCCCccEEeCC
Q 047927          627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTV-SATFPANCSLRTLDLN  705 (1005)
Q Consensus       627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~  705 (1005)
                      .++.++..++ .+|..+  .+++++||+++|+++...+..|.+++  +|++|++++|.+...+ +.+|.+++.++++.+.
T Consensus        12 ~i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~--~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             EEEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCT--TCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             EEEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccc--hhhhhhhccccccceeecccccccccccccccc
Confidence            4455555555 444443  24677777777777754455667776  7778888777776543 4467777788888765


Q ss_pred             -CCeecccCcccccCCCCCCEEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccCCCCCCCCC-CCccEEEccCCc
Q 047927          706 -GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNISCPRYNVSW-PMLQIIDLASNK  782 (1005)
Q Consensus       706 -~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~ls~N~  782 (1005)
                       .|++....+..|.++++|+.+++++|.+....+ ..+..++.+..+...++++....  +..+..+ ..++.+++++|+
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~--~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCSSC
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc--ccccccccccceeeeccccc
Confidence             467777777778888888888888888765433 23445666666666666665432  3334444 467888888888


Q ss_pred             ccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceE-EECCCCeeeccCc
Q 047927          783 FSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS-IDFSRNNFEGPIP  861 (1005)
Q Consensus       783 ~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~Ls~N~l~g~ip  861 (1005)
                      ++...+ ..+                                                 ..+.+.. +++++|+++...+
T Consensus       165 l~~i~~-~~~-------------------------------------------------~~~~l~~~~~l~~n~l~~l~~  194 (242)
T d1xwdc1         165 IQEIHN-CAF-------------------------------------------------NGTQLDELNLSDNNNLEELPN  194 (242)
T ss_dssp             CCEECT-TTT-------------------------------------------------TTCCEEEEECTTCTTCCCCCT
T ss_pred             cccccc-ccc-------------------------------------------------cchhhhccccccccccccccH
Confidence            874322 111                                                 1223333 4678888985545


Q ss_pred             ccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCC
Q 047927          862 EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSM  901 (1005)
Q Consensus       862 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~  901 (1005)
                      ..|.++++|++|||++|+|+...+..+.++++|++|++++
T Consensus       195 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             HHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            6689999999999999999955455677777777776643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.2e-15  Score=155.56  Aligned_cols=219  Identities=22%  Similarity=0.262  Sum_probs=98.1

Q ss_pred             ccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcc-cccCccccCCCChhhhh
Q 047927           79 LKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMY-FVRAPLKLENPNLSGLL  157 (1005)
Q Consensus        79 l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~-~~~~~~~~~~~~~~~~l  157 (1005)
                      ...|++||++++.+....++..+.++++|++|++++|.+.+..+..++++++|++|++++|. +++       ..+....
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd-------~~l~~l~  117 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-------FALQTLL  117 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-------HHHHHHH
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc-------cccchhh
Confidence            34556666665555433333444555666666666665555555555555666666665542 111       1122233


Q ss_pred             hcCccCceeecCCcc-CCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCC-cchhccC
Q 047927          158 QNLAELRELYLDGVN-ISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSP-VPEFLAD  235 (1005)
Q Consensus       158 ~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~p~~l~~  235 (1005)
                      .++++|++|+++++. +++...  ...+...+++|+.|+++++..                      .+... +.....+
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~----------------------~i~~~~l~~l~~~  173 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHV--QVAVAHVSETITQLNLSGYRK----------------------NLQKSDLSTLVRR  173 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEEECCSCGG----------------------GSCHHHHHHHHHH
T ss_pred             HHHHhccccccccccccccccc--hhhhcccccccchhhhccccc----------------------ccccccccccccc
Confidence            445555555555532 221111  111222234455555544310                      11111 1122233


Q ss_pred             CCCCcEEEccCC-CCCccCccccCCCCCCCEEeCCCC-CCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCE
Q 047927          236 FSNLTSLYLSSC-GLHGAFPEKILQLPTLETLDLSYN-ELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSR  313 (1005)
Q Consensus       236 l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  313 (1005)
                      +++|++|++++| .+++..+..+.++++|++|++++| .+.+..+..+..+++|++|+++++--.+.++.....+++|+ 
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~-  252 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ-  252 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE-
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc-
Confidence            455555555554 344444455555555555555554 23333333444455566666555521122222223455543 


Q ss_pred             EeecCCccCCCCCccCCC
Q 047927          314 VEFYLCNFNGPIPTSMSD  331 (1005)
Q Consensus       314 L~l~~n~~~~~~~~~l~~  331 (1005)
                        +..+.++...++.++.
T Consensus       253 --i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         253 --INCSHFTTIARPTIGN  268 (284)
T ss_dssp             --ESCCCSCCTTCSSCSS
T ss_pred             --ccCccCCCCCCCccCc
Confidence              4455555544444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.4e-14  Score=149.75  Aligned_cols=84  Identities=21%  Similarity=0.213  Sum_probs=41.4

Q ss_pred             CCccEEeCCCCeeccc-CcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCC-cCCcccCCCCCCCCCCCcc
Q 047927          697 CSLRTLDLNGNQLEGM-VPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN-NFFGNISCPRYNVSWPMLQ  774 (1005)
Q Consensus       697 ~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~  774 (1005)
                      .+|++|++++|.++.. ++..+..+++|++|++++|++++..+..++.+++|++|++++| .++.. ........+++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~-~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccccccc-ccchhhHHHHhcc
Confidence            3555555555555432 2333455555666666555555555555555555666665554 23210 0011123345566


Q ss_pred             EEEccCC
Q 047927          775 IIDLASN  781 (1005)
Q Consensus       775 ~L~ls~N  781 (1005)
                      .|+++++
T Consensus       125 ~L~ls~c  131 (284)
T d2astb2         125 ELNLSWC  131 (284)
T ss_dssp             EEECCCC
T ss_pred             ccccccc
Confidence            6666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=1.9e-14  Score=155.89  Aligned_cols=246  Identities=16%  Similarity=0.140  Sum_probs=143.2

Q ss_pred             ChhhhccCCCCeEEccCccccccCCc----hhhhcCcccccEEECCCCcCCcc----------ccCccCCCCCccEEeCC
Q 047927          640 PESICNATNLLVLDLSYNYLSGMIPT----CLINMSDSQLGVLNLRRNNLNGT----------VSATFPANCSLRTLDLN  705 (1005)
Q Consensus       640 p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~  705 (1005)
                      ...+.....|+.|+|++|.+......    .+...+  +|+.++++++.....          +...+...++|++|+|+
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~--~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK--DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT--TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCC--CCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            34455566666666666666432222    222333  666666666543321          11234455667777777


Q ss_pred             CCeeccc----CcccccCCCCCCEEECCCCcCCCCcchh-------------hhcCCCCcEEecCCCcCCccc--CCCCC
Q 047927          706 GNQLEGM----VPKSLANCSVLEILDLGNNQFDDTFPCW-------------VKNASRLHVLILRSNNFFGNI--SCPRY  766 (1005)
Q Consensus       706 ~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-------------~~~l~~L~~L~L~~N~l~~~~--~~~~~  766 (1005)
                      +|.+...    +...+..+++|+.|++++|.+.......             ....+.|+.+.+++|++...-  .....
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            7766643    2334455677777777777664211111             123556777777777664211  01122


Q ss_pred             CCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccc
Q 047927          767 NVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF  846 (1005)
Q Consensus       767 ~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  846 (1005)
                      +...+.|+.+++++|.+...-...++                                            .......+.|
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l--------------------------------------------~~~l~~~~~L  217 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLL--------------------------------------------LEGLAYCQEL  217 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHH--------------------------------------------HTTGGGCTTC
T ss_pred             hhhhhhhcccccccccccccccccch--------------------------------------------hhhhcchhhh
Confidence            33456677777777766521000000                                            0001235678


Q ss_pred             eEEECCCCeeecc----CcccccCCCCCCEEECCCCcCcccCchhh----hc--CCCCCEEeCCCCcCccc----Ccccc
Q 047927          847 TSIDFSRNNFEGP----IPEEMGLLQSLCALNLSHNALTGSIPSLI----GN--LREIESLDLSMNNLSGT----IPAQL  912 (1005)
Q Consensus       847 ~~L~Ls~N~l~g~----ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~----~~--l~~L~~LdLs~N~l~~~----ip~~l  912 (1005)
                      +.|+|++|.++..    +...+...++|++|+|++|.|++.-...+    ..  .+.|+.||+++|+|+..    +...+
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l  297 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  297 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHH
Confidence            8888888888643    44567788889999999999886433333    33  35799999999998754    33444


Q ss_pred             c-CCCCCCeEEccCCccccc
Q 047927          913 A-SLNFLSVLNLSYNHLVGR  931 (1005)
Q Consensus       913 ~-~l~~L~~L~ls~N~l~g~  931 (1005)
                      . +.+.|++|++++|+++..
T Consensus       298 ~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         298 DEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHCTTCCEEECTTSBSCTT
T ss_pred             HccCCCCCEEECCCCcCCCc
Confidence            3 577899999999998643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-13  Score=129.41  Aligned_cols=130  Identities=19%  Similarity=0.129  Sum_probs=98.5

Q ss_pred             hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCC
Q 047927          643 ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV  722 (1005)
Q Consensus       643 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  722 (1005)
                      +.++..++.|||++|+|+ .++..+..++  +|+.|++++|+++..  +.|..+++|++|++++|+++...+..+..+++
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~--~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLD--QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTT--CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccc--cCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccc
Confidence            456778888888888887 4566666666  888888888888865  35788888999999999988766666778889


Q ss_pred             CCEEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccC-CCCCCCCCCCccEEE
Q 047927          723 LEILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNIS-CPRYNVSWPMLQIID  777 (1005)
Q Consensus       723 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~  777 (1005)
                      |+.|++++|+++.... ..+..+++|++|++++|+++.... .+..+..+|+|++||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999999998886532 567888889999999988764310 011356678888877

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=1e-12  Score=117.19  Aligned_cols=101  Identities=27%  Similarity=0.320  Sum_probs=48.2

Q ss_pred             eEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCC
Q 047927          651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGN  730 (1005)
Q Consensus       651 ~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  730 (1005)
                      +||+++|+++ .++ .+..+.  +|++|++++|+++. +|..|..+++|++|++++|++++. | .+..+++|+.|++++
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~--~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLL--LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGT--TCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             EEEcCCCCCC-CCc-ccccCC--CCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            3445555544 222 244444  44555555555443 233444455555555555555532 2 355555555555555


Q ss_pred             CcCCCCcc-hhhhcCCCCcEEecCCCcCC
Q 047927          731 NQFDDTFP-CWVKNASRLHVLILRSNNFF  758 (1005)
Q Consensus       731 N~l~~~~p-~~~~~l~~L~~L~L~~N~l~  758 (1005)
                      |++++... ..++.+++|+.|++++|+++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            55554321 34455555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=5.7e-14  Score=151.99  Aligned_cols=197  Identities=18%  Similarity=0.179  Sum_probs=100.8

Q ss_pred             CcccccccccceeecCCccCCCC---CCCCcccCCCCCcEEEcccCCCcC---CCc-------ccccCCCCCcEEeCCCc
Q 047927           73 SSSLFSLKYLQSLNLAFNMFNAT---EIPSGLGNLTNLTTLNLSNAGFAG---QIP-------IQVSGMTRLVTLDLSGM  139 (1005)
Q Consensus        73 ~~~l~~l~~L~~L~Ls~~~~~~~---~lp~~l~~l~~L~~L~Ls~n~~~~---~lp-------~~l~~l~~L~~L~ls~n  139 (1005)
                      ..++.+...|++|+|++|.+...   .+.+.+...++|+.|+++++....   ..|       ..+..+++|++|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            34566677777888887766432   123445667777888777664321   111       23455677777777777


Q ss_pred             ccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHH-H--------hccCCCccEEEccCCCCCCCCC----
Q 047927          140 YFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQA-L--------SSLVPKLQVLSLSGCFLSGPVD----  206 (1005)
Q Consensus       140 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-l--------~~l~~~L~~L~L~~n~~~~~~~----  206 (1005)
                      .+....    ...+...+..+++|++|+++++.+...+...+.. +        ....+.|+.+++++|.+.....    
T Consensus       104 ~i~~~~----~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~  179 (344)
T d2ca6a1         104 AFGPTA----QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  179 (344)
T ss_dssp             CCCTTT----HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             cccccc----ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence            654321    1123344566677777777777664433222211 1        1123556666666655543211    


Q ss_pred             ccccCCCCCcEEECCCCCCCCC-----cchhccCCCCCcEEEccCCCCCcc----CccccCCCCCCCEEeCCCCCC
Q 047927          207 PSLSNLRSLSVIRLDMNDLYSP-----VPEFLADFSNLTSLYLSSCGLHGA----FPEKILQLPTLETLDLSYNEL  273 (1005)
Q Consensus       207 ~~l~~l~~L~~L~l~~n~~~~~-----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~  273 (1005)
                      ..+...+.|+.|++++|.+...     +...+..+++|++|++++|.++..    +...+..+++|++|++++|.+
T Consensus       180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence            1233445555555555554321     112234445555555555554322    223334455555555555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.9e-12  Score=115.36  Aligned_cols=117  Identities=22%  Similarity=0.257  Sum_probs=93.9

Q ss_pred             EEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927          627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG  706 (1005)
Q Consensus       627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  706 (1005)
                      +|++++|.++.. + .+..+++|++|++++|+++ .+|..+..++  +|+.|++++|.+++..  .+..+++|++|++++
T Consensus         2 ~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~--~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALR--CLEVLQASDNALENVD--GVANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCT--TCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred             EEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhh--cccccccccccccccC--ccccccccCeEECCC
Confidence            577777777733 3 4788999999999999998 6787888888  8999999999998753  588999999999999


Q ss_pred             CeecccCc-ccccCCCCCCEEECCCCcCCCC---cchhhhcCCCCcEE
Q 047927          707 NQLEGMVP-KSLANCSVLEILDLGNNQFDDT---FPCWVKNASRLHVL  750 (1005)
Q Consensus       707 N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L  750 (1005)
                      |++++..+ ..+..+++|+.|++++|++++.   ....+..+++|+.|
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99996543 6789999999999999998743   23344556776654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.8e-13  Score=124.36  Aligned_cols=125  Identities=15%  Similarity=0.071  Sum_probs=102.9

Q ss_pred             cCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccE
Q 047927          622 MSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT  701 (1005)
Q Consensus       622 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  701 (1005)
                      +..+++|++++|+++.. +..+..+++|+.|++++|+++. ++ .+..++  +|++|++++|+++...+..+..+++|++
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~--~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD-GFPLLR--RLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC-CCCCCS--SCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cC-CcccCc--chhhhhcccccccCCCcccccccccccc
Confidence            45678889999988854 6667889999999999999984 43 467777  8999999999999887777788999999


Q ss_pred             EeCCCCeecccCc-ccccCCCCCCEEECCCCcCCCCc---chhhhcCCCCcEEe
Q 047927          702 LDLNGNQLEGMVP-KSLANCSVLEILDLGNNQFDDTF---PCWVKNASRLHVLI  751 (1005)
Q Consensus       702 L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~  751 (1005)
                      |++++|+++.... ..+..+++|++|++++|+++...   +..+..+++|++||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999999985432 57889999999999999987543   23588899999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.4e-11  Score=110.18  Aligned_cols=99  Identities=20%  Similarity=0.208  Sum_probs=47.4

Q ss_pred             cCCCCCccEEeCCCC-eecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCC
Q 047927          693 FPANCSLRTLDLNGN-QLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP  771 (1005)
Q Consensus       693 ~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  771 (1005)
                      +..+++|++|++++| .++.+.+++|.++++|+.|++++|+|+.+.|.+|..+++|++|+|++|+++. +  |.......
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l--~~~~~~~~  103 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-L--SWKTVQGL  103 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-C--CSTTTCSC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcc-c--Chhhhccc
Confidence            333444444444333 2443334444444444444444444444444444445555555555554442 1  33333334


Q ss_pred             CccEEEccCCcccccCChHHHhh
Q 047927          772 MLQIIDLASNKFSGRLPQKWLLN  794 (1005)
Q Consensus       772 ~L~~L~ls~N~~~~~~p~~~~~~  794 (1005)
                      .|+.|++++|+|.+..-..|+..
T Consensus       104 ~l~~L~L~~Np~~C~C~~~~l~~  126 (156)
T d2ifga3         104 SLQELVLSGNPLHCSCALRWLQR  126 (156)
T ss_dssp             CCCEEECCSSCCCCCGGGHHHHH
T ss_pred             cccccccCCCcccCCchHHHHHH
Confidence            56667777777765554445443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.3e-11  Score=109.77  Aligned_cols=103  Identities=20%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             EEecCCcccccCChhhhccCCCCeEEccCcc-ccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927          628 FSFSKNSLTGVIPESICNATNLLVLDLSYNY-LSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG  706 (1005)
Q Consensus       628 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  706 (1005)
                      ++.+++.+. .+|..+..+++|+.|++++|+ ++...+..|.+++  +|+.|++++|+|+.+.+.+|..+++|++|+|++
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~--~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLG--ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCC--CCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhcccc--ccCcceeeccccCCcccccccccccccceeccC
Confidence            444444443 234445555555566654442 5443344455554  555555555555555555555555555555555


Q ss_pred             CeecccCcccccCCCCCCEEECCCCcCC
Q 047927          707 NQLEGMVPKSLANCSVLEILDLGNNQFD  734 (1005)
Q Consensus       707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  734 (1005)
                      |+++...+..|... +|+.|+|++|++.
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCcccChhhhccc-cccccccCCCccc
Confidence            55554333333332 4555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=1.3e-12  Score=127.56  Aligned_cols=132  Identities=20%  Similarity=0.242  Sum_probs=81.9

Q ss_pred             CChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCccccc
Q 047927          639 IPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLA  718 (1005)
Q Consensus       639 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~  718 (1005)
                      ++..+..+++|+.|+|++|+|+. ++ .+..++  +|+.|++++|.++.. +..+..+++|++|++++|+++..  +.+.
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~--~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGME--NLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESC-CC-CHHHHT--TCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             hhhHHhcccccceeECcccCCCC-cc-cccCCc--cccChhhcccccccc-ccccccccccccccccccccccc--cccc
Confidence            34556667777777777777763 33 366666  677777777776643 33333445677777777777743  3466


Q ss_pred             CCCCCCEEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccCCCC--------CCCCCCCccEEE
Q 047927          719 NCSVLEILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNISCPR--------YNVSWPMLQIID  777 (1005)
Q Consensus       719 ~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~~~l~~L~~L~  777 (1005)
                      .+++|+.|++++|+++.... .++..+++|+.|++++|++........        .+..+|+|+.||
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            67777777777777765432 456777777777777777654321000        134567777766

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.06  E-value=4.6e-12  Score=123.52  Aligned_cols=128  Identities=21%  Similarity=0.219  Sum_probs=104.8

Q ss_pred             ccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCcc
Q 047927          621 FMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR  700 (1005)
Q Consensus       621 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  700 (1005)
                      .+++|++|++++|+++.. + .+..+++|+.|++++|+++ .+|.....++  +|+.|++++|+++..  ..+..+++|+
T Consensus        46 ~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~--~L~~L~l~~N~i~~l--~~~~~l~~L~  118 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVAD--TLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             HTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHH--HCCEEECSEEECCCH--HHHHHHHHSS
T ss_pred             cccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccccccccc--ccccccccccccccc--cccccccccc
Confidence            478899999999999854 4 5899999999999999998 5666555555  799999999999875  3477889999


Q ss_pred             EEeCCCCeecccCc-ccccCCCCCCEEECCCCcCCCCcch----------hhhcCCCCcEEecCCCcC
Q 047927          701 TLDLNGNQLEGMVP-KSLANCSVLEILDLGNNQFDDTFPC----------WVKNASRLHVLILRSNNF  757 (1005)
Q Consensus       701 ~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~~~~l~~L~~L~L~~N~l  757 (1005)
                      +|++++|+++.... ..+..+++|+.|++++|++....+.          .+..+++|+.||  +..+
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I  184 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGG
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccC
Confidence            99999999986432 5789999999999999998754443          267899999986  4444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=9.6e-08  Score=88.92  Aligned_cols=63  Identities=32%  Similarity=0.299  Sum_probs=29.5

Q ss_pred             cccEEECCCCcCCccc--cCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCC
Q 047927          674 QLGVLNLRRNNLNGTV--SATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT  736 (1005)
Q Consensus       674 ~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  736 (1005)
                      +|++|+|++|+++...  +..+..+++|+.|+|++|.++...+-.+.....|+.|++++|++.+.
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            4555555555554432  22334445555555555555533222222333455555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=9.8e-07  Score=81.85  Aligned_cols=81  Identities=23%  Similarity=0.091  Sum_probs=44.4

Q ss_pred             hcccceEEECCCCeeeccC--cccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcc-------cc
Q 047927          842 ILNIFTSIDFSRNNFEGPI--PEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPA-------QL  912 (1005)
Q Consensus       842 ~~~~l~~L~Ls~N~l~g~i--p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~-------~l  912 (1005)
                      .++.|+.||||+|+++..-  +..+..+++|+.||||+|.++..-+-.......|+.|++++|.+++....       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            4566666666666666432  33455566666666666666632222233334566666666666554432       24


Q ss_pred             cCCCCCCeEE
Q 047927          913 ASLNFLSVLN  922 (1005)
Q Consensus       913 ~~l~~L~~L~  922 (1005)
                      ..+++|++||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4556666655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.51  E-value=3.8e-05  Score=71.11  Aligned_cols=45  Identities=16%  Similarity=0.246  Sum_probs=20.2

Q ss_pred             hcCccCceeecCCc-cCCCchhhHHHHHhccCCCccEEEccCCCCC
Q 047927          158 QNLAELRELYLDGV-NISAPGIEWCQALSSLVPKLQVLSLSGCFLS  202 (1005)
Q Consensus       158 ~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~  202 (1005)
                      .+.++|++|+++++ .++..+...+.......++|++|++++|.+.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            34455666666543 3444333333222222245555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.51  E-value=4.5e-05  Score=70.60  Aligned_cols=71  Identities=8%  Similarity=0.089  Sum_probs=31.4

Q ss_pred             ccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCC
Q 047927          125 VSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGC  199 (1005)
Q Consensus       125 l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n  199 (1005)
                      +...+.|++|++++|.+....    ...+...+...+.|++|++++|.+++.+...+.......+.|++|++++|
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~----~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSE----ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHH----HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCccceeeccccccchhH----HHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            334444555555554432211    11233344455555555555555555444443332222244444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.93  E-value=0.00015  Score=66.90  Aligned_cols=116  Identities=13%  Similarity=0.054  Sum_probs=49.9

Q ss_pred             cccccceeecCC-ccCCCCC---CCCcccCCCCCcEEEcccCCCcCC----CcccccCCCCCcEEeCCCcccccCccccC
Q 047927           78 SLKYLQSLNLAF-NMFNATE---IPSGLGNLTNLTTLNLSNAGFAGQ----IPIQVSGMTRLVTLDLSGMYFVRAPLKLE  149 (1005)
Q Consensus        78 ~l~~L~~L~Ls~-~~~~~~~---lp~~l~~l~~L~~L~Ls~n~~~~~----lp~~l~~l~~L~~L~ls~n~~~~~~~~~~  149 (1005)
                      +.+.|++|+|++ +.++...   +-..+...++|++|++++|.+...    +-..+...+.++.+++++|.+....    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g----   90 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG----   90 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH----
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh----
Confidence            345566666654 2333221   223344556666666666655432    1122334455555555555432211    


Q ss_pred             CCChhhhhhcCccCceeecC--CccCCCchhhHHHHHhccCCCccEEEcc
Q 047927          150 NPNLSGLLQNLAELRELYLD--GVNISAPGIEWCQALSSLVPKLQVLSLS  197 (1005)
Q Consensus       150 ~~~~~~~l~~l~~L~~L~l~--~~~~~~~~~~~~~~l~~l~~~L~~L~L~  197 (1005)
                      ...+...+...++|++++++  ++.+.+.+...+.......++|++|+++
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~  140 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH  140 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence            11223334445555543332  3344443333333322222444444443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.72  E-value=0.00036  Score=64.32  Aligned_cols=44  Identities=14%  Similarity=0.178  Sum_probs=19.1

Q ss_pred             hhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCC
Q 047927          157 LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF  200 (1005)
Q Consensus       157 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~  200 (1005)
                      +...++|++|+++++.++..+...+.......+.++.+++++|.
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            34445555555555554444443333332222444444444433