Citrus Sinensis ID: 047932
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 598 | 2.2.26 [Sep-21-2011] | |||||||
| Q9CAN0 | 630 | Pentatricopeptide repeat- | yes | no | 0.770 | 0.731 | 0.391 | 2e-96 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.797 | 0.792 | 0.356 | 6e-96 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.770 | 0.750 | 0.383 | 1e-95 | |
| Q3ECK2 | 548 | Pentatricopeptide repeat- | no | no | 0.754 | 0.822 | 0.383 | 3e-94 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.770 | 0.729 | 0.376 | 4e-94 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.770 | 0.732 | 0.378 | 4e-94 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.770 | 0.731 | 0.372 | 1e-93 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.770 | 0.727 | 0.381 | 5e-93 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.770 | 0.824 | 0.374 | 3e-91 | |
| Q9SI78 | 485 | Pentatricopeptide repeat- | no | no | 0.737 | 0.909 | 0.394 | 2e-90 |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 186/475 (39%), Positives = 285/475 (60%), Gaps = 14/475 (2%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G N+ D V SL ++ G PD +T
Sbjct: 135 ALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAV-SLVGQMVEMGYQPDSFTFNTLI 193
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + + R EA AL ++ V GC+PD+ TY ++NGLC+ G +AL+L ++M G E
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
P V YNTIID +C V+ A+ LF +M ++ I PNVVTYNSLI C + W
Sbjct: 254 ------PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 307
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++PNVVTFS ++D K GK+ EA +L D MI+ + P+ F Y++L
Sbjct: 308 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 367
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK +F M S C +VV+Y TLI G+CK K V+E + L+R+M +G+
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL G F+ + ++A +F +M + V D Y+ +DGLC NG V AL
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + SK E DI +Y+ +I+G+CK GK+E W+LF SLS G+ PNVVTY M+ G C
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 547
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
G ++A LF +M+ +G PD +NT++ +R+ + K++ +L+ +M SC
Sbjct: 548 RKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGD--KAASAELIREMRSC 600
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (902), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 189/530 (35%), Positives = 295/530 (55%), Gaps = 53/530 (10%)
Query: 38 LKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSL 97
+ER +S I I ++A+ +F M+R P P V F+ F +A+ K ++ VL
Sbjct: 56 FRERLRSG----IVDIKKDDAIALFQEMIRSRPLPSLVD-FSRFFSAIARTKQFNLVLDF 110
Query: 98 FKRLNSTGLFPDLYTHSILINC-------------------------------------- 119
K+L G+ ++YT +I+INC
Sbjct: 111 CKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFL 170
Query: 120 --RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 177
++ EA L ++ GC+PDV TYN+++NG+CR+G T +AL+L +M N
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------V 224
Query: 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKR 237
K D TY+TIID +C++G +D A+ LF +M+ + I +VVTYNSL+ A WN+
Sbjct: 225 KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGAL 284
Query: 238 LFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297
L M+ + + PNV+TF+V++D K GK++EA+ L MI G+ PN YNTLMDG+C
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344
Query: 298 LTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV 357
+ R++ A + M N C D+V++T+LI GYC K V++ + ++R + +G+ V
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAV 404
Query: 358 TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAI 417
TYS L G + +++ A +LF EM + V D Y +DGLC NG + +ALE+F +
Sbjct: 405 TYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464
Query: 418 GNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQM 477
SK +L I+ Y+ +I+G+CK GK+E AW LF SL G+ PNV+TY +MI GLC G +
Sbjct: 465 QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524
Query: 478 DKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
+A+ L ME G P+ +NT++ +R+ + + S+ KL+ +M SC
Sbjct: 525 SEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASA--KLIEEMKSC 572
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 284/475 (59%), Gaps = 14/475 (2%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL I M+++ P V+ ++L G N+ + V +L ++ G PD T
Sbjct: 119 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAV-ALVDQMVEMGYQPDTVTFTTLV 177
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + + + EA AL ++ V GC+PD+ TY +INGLC+ G +ALNL +M G E
Sbjct: 178 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 237
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
D V Y+T+ID +CK VD A+ LF +M ++ I P+V TY+SLI C + W
Sbjct: 238 ------ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRW 291
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++PNVVTF+ ++D K GK+ EA +L D MIQ + PN YN+L
Sbjct: 292 SDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSL 351
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ A+++F M S C+ DVV+Y TLING+CK K V + + L+R M +G+
Sbjct: 352 INGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGL 411
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL G F+ ++A +F +M + V + YNT +DGLCKNG + +A+
Sbjct: 412 VGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMV 471
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + SK E DI +Y+ + +G+CK GK+E W+LF SLS G+ P+V+ YN MI G C
Sbjct: 472 VFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFC 531
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
G ++A+ LF+ M+ G PD +NT++ +R+ + K++ +L+ +M SC
Sbjct: 532 KKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGD--KAASAELIKEMRSC 584
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 346 bits (888), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 179/467 (38%), Positives = 280/467 (59%), Gaps = 16/467 (3%)
Query: 38 LKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSL 97
L+ER + DI L N+A+ +F M++ P P V FN L + K K YD V+SL
Sbjct: 52 LRERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPSIVD-FNRLLSAIVKLKKYDVVISL 107
Query: 98 FKRLNSTGLFPDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR 152
K++ G+ DLYT +I+INC ++ A ++ K+ G EPD T +L+NG CR
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167
Query: 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI 212
A++L ++M E G KPD V YN IID +CK V+ A + F +++ + I
Sbjct: 168 RNRVSDAVSLVDKMV----EIGY--KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGI 221
Query: 213 NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASR 272
PNVVTY +L++ ++ W++A RL M+ + + PNV+T+S ++D KNGK+ EA
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 281
Query: 273 LLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYC 332
L + M+++ + P+ Y++L++G CL R++ A ++F M S GC+ DVVSY TLING+C
Sbjct: 282 LFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC 341
Query: 333 KTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTY 392
K K VE+ + L+R+M +G+ VTY+TL G F+ V+ A + F +M ++ D +
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 401
Query: 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSL 452
YN + GLC NG + +AL +F + + +LDI++Y+ +I G+CK GK+E AW LF SL
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461
Query: 453 SRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV-EPDCVI 498
S GL P++VTY M+ GLC G + + L+ M+ +G+ + DC +
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 508
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (887), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 179/475 (37%), Positives = 282/475 (59%), Gaps = 14/475 (2%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G + D V +L ++ G PD +T
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAV-ALVDQMVEMGYKPDTFTFTTLI 195
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + ++ + EA AL ++ GC+PD+ TY T++NGLC+ G +AL+L ++M G E
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 255
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
D V YNTIIDG+CK +D A+ LF +M ++ I P+V TY+SLI C + W
Sbjct: 256 ------ADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRW 309
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++PNVVTFS ++D K GK+ EA +L D MI+ + P+ F Y++L
Sbjct: 310 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 369
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK +F M S C +VV+Y+TLI G+CK K VEE + L+R+M +G+
Sbjct: 370 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGL 429
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL G F+ ++A +F +M V + YN +DGLCKNG + +A+
Sbjct: 430 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMV 489
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + S E DI +Y+ +I+G+CK GK+E WELF +LS G+ PNV+ YN MI G C
Sbjct: 490 VFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFC 549
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
G ++A L M+ G P+ +NT++ +R+ + S+ +L+ +M SC
Sbjct: 550 RKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA--ELIKEMRSC 602
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 346 bits (887), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 281/475 (59%), Gaps = 14/475 (2%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G K ++L ++ P+ T
Sbjct: 134 ALAVLGKMMKLGYEPDIVTLSSLLNG-YCHGKRISEAVALVDQMFVMEYQPNTVTFNTLI 192
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + ++ + EA AL ++ GC+PD+FTY T++NGLC+ G +AL+L ++M G E
Sbjct: 193 HGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 252
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
D V Y TIID +C V+ A+ LF +M ++ I PNVVTYNSLI C + W
Sbjct: 253 ------ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 306
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++PNVVTFS ++D K GK+ EA +L D MI+ + P+ F Y++L
Sbjct: 307 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK +F M S C +VV+Y TLI G+CK K VEE + L+R+M +G+
Sbjct: 367 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL GLF+ + A K+F +M + V D Y+ +DGLCK G + +AL
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 486
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + SK E DI +Y+ +I+G+CK GK+E W+LF SLS G+ PNV+ Y MI G C
Sbjct: 487 VFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC 546
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
G ++A LF +M+ G P+ +NT++ +R+ + K++ +L+ +M SC
Sbjct: 547 RKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGD--KAASAELIKEMRSC 599
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/475 (37%), Positives = 283/475 (59%), Gaps = 14/475 (2%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G +K ++L ++ TG P+ T
Sbjct: 135 ALAVLGKMMKLGYEPNIVTLSSLLNG-YCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 193
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + ++ + EA AL ++ GC+PD+ TY ++NGLC+ G T +A NL +M G E
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 253
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
P + YNTIIDG+CK +D A+ LF +M+ + I PNVVTY+SLI C + W
Sbjct: 254 ------PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++P+V TFS ++D K GK+ EA +L D M++ + P+ Y++L
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK++F M S C DVV+Y TLI G+CK K VEE + ++R+M +G+
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+ L GLF+ + A ++F EM + V + YNT +DGLCKNG + +A+
Sbjct: 428 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + SK E I +Y+ +I+G+CK GK+E W+LF +LS G+ P+VV YN MI G C
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
G ++A LF +M+ G P+ +NT++ +R+ + S+ +L+ +M SC
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA--ELIKEMRSC 600
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 284/475 (59%), Gaps = 14/475 (2%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G + D V +L ++ G PD T
Sbjct: 139 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV-ALVDQMVEMGYRPDTITFTTLI 197
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + ++ + EA AL ++ GC+P++ TY ++NGLC+ G T +ALNL +M E
Sbjct: 198 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE 257
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
D V +NTIID +CK VD A+ LF +M+ + I PNVVTY+SLI C W
Sbjct: 258 ------ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 311
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A +L M+++ ++PN+VTF+ ++D K GK EA +L D MI+ + P+ F YN+L
Sbjct: 312 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSL 371
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK++F M S C DVV+Y TLI G+CK+K VE+ L+R+M +G+
Sbjct: 372 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 431
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL GLF ++A K+F +M + V D Y+ +DGLC NG + +ALE
Sbjct: 432 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 491
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + S+ +LDI Y+ +I+G+CK GK++ W+LF SLS G+ PNVVTYN MI GLC
Sbjct: 492 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 551
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
+ + +A+ L M+ G P+ +NT++ +R+ + K++ +L+ +M SC
Sbjct: 552 SKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD--KAASAELIREMRSC 604
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 336 bits (861), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 178/475 (37%), Positives = 281/475 (59%), Gaps = 14/475 (2%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G + D V +L ++ G PD T
Sbjct: 64 ALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV-ALVDQMVEMGYRPDTITFTTLI 122
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + ++ + EA AL ++ GC+P++ TY ++NGLC+ G +A NL +M E
Sbjct: 123 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 182
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
D V +NTIID +CK VD A+ LF +M+ + I PNVVTY+SLI C W
Sbjct: 183 ------ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 236
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A +L M+++ ++PN+VTF+ ++D K GK EA +L D MI+ + P+ F YN+L
Sbjct: 237 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK++F M S C D+ +Y TLI G+CK+K VE+ L+R+M +G+
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL GLF ++A K+F +M + V D Y+ +DGLC NG + +ALE
Sbjct: 357 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 416
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + S+ +LDI Y+ +I+G+CK GK++ W+LF SLS G+ PNVVTYN MI GLC
Sbjct: 417 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 476
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
+ + +A+ L M+ G PD +NT++ +R+ + K++ +L+ +M SC
Sbjct: 477 SKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD--KAASAELIREMRSC 529
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (854), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 181/459 (39%), Positives = 278/459 (60%), Gaps = 18/459 (3%)
Query: 41 RSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKR 100
R+ S+ + +NL E + +F M++ P P V F+ + +AK+K+YD V+SLF
Sbjct: 39 RTFSTKRSSMNL---EEEIDLFCKMIQSRPLPSIVD-FSKVLSKIAKSKNYDLVISLFHH 94
Query: 101 LNSTGLFPDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH 155
+ G+ DLY+++I+INC R + A ++ K+ FG EPDV T ++LING C+
Sbjct: 95 MEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNR 154
Query: 156 TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215
A++L +M E G +PD V YNTIIDG CK G V+ A+ELF +M+ + + +
Sbjct: 155 VFDAIDLVSKME----EMGF--RPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRAD 208
Query: 216 VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLD 275
VTYNSL+ + W++A RL M+ + + PNV+TF+ ++D K GK EA +L +
Sbjct: 209 AVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYE 268
Query: 276 LMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTK 335
M + V P+ F YN+L++G C+ GRV+ AK++ M + GC+ DVV+Y TLING+CK+K
Sbjct: 269 EMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSK 328
Query: 336 NVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYN 395
V+E L+R+M +G+ +TY+T+ G F+ + + A ++F M D + Y+
Sbjct: 329 RVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYS 385
Query: 396 TFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV 455
+ GLC N V +AL LF + S+ ELDI +Y+ +I G+CKIG +E AW+LF+SLS
Sbjct: 386 ILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK 445
Query: 456 GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP 494
GL P+VV+Y MI G C Q DK+ L+ M+ G+ P
Sbjct: 446 GLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 598 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.881 | 0.840 | 0.466 | 1e-138 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.765 | 0.741 | 0.488 | 1e-132 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.819 | 0.809 | 0.450 | 1e-126 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.854 | 0.844 | 0.430 | 1e-121 | |
| 255559961 | 628 | pentatricopeptide repeat-containing prot | 0.775 | 0.738 | 0.448 | 1e-119 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.841 | 0.842 | 0.425 | 1e-117 | |
| 449462479 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.777 | 0.801 | 0.428 | 1e-114 | |
| 449444228 | 585 | PREDICTED: pentatricopeptide repeat-cont | 0.814 | 0.832 | 0.422 | 1e-105 | |
| 449444222 | 588 | PREDICTED: pentatricopeptide repeat-cont | 0.752 | 0.765 | 0.446 | 1e-104 | |
| 147771991 | 586 | hypothetical protein VITISV_022964 [Viti | 0.787 | 0.803 | 0.405 | 1e-100 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 271/581 (46%), Positives = 355/581 (61%), Gaps = 54/581 (9%)
Query: 9 NEPSDPTTTAKLKESLRLTVKDGASIEKFLKERSKSSGQGDINLITPNEALCIFDYMLRM 68
+ P P + K+++ D +E FLK KS I +EA +F++++ M
Sbjct: 34 HRPISPGPISLTKDTVS-NAPDRGQLENFLKSNCKSGH------IKRSEAFSVFNHLIDM 86
Query: 69 HPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC--------- 119
P+PP +SSFN L G +AK K Y V+SL+KR++ GL PD T +ILINC
Sbjct: 87 QPTPP-ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDF 145
Query: 120 -------------------------------RIMEAAALFTKLRVFGCEPDVFTYNTLIN 148
RI EA L K+ G P+V TY TL+N
Sbjct: 146 GLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLN 205
Query: 149 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208
GLC TG+T++A+ L EEM NGNG FGV KP+ V Y TIID +CK+G +DK ELFL+MK
Sbjct: 206 GLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMK 265
Query: 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKME 268
I+P+VV Y+S+IH H W AK LF +M+D+GVHPNVVTF+V++D LCK GKME
Sbjct: 266 GRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKME 325
Query: 269 EASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLI 328
EA+ LL LMIQ G P+TF YNTL+DGFCL GR++ A++LFVSMES G D VSY LI
Sbjct: 326 EANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLI 385
Query: 329 NGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVA 388
NGYCK+ + EA LYR+M+ K I PTV+TY+TL GLF +V A LF EM+ +D+
Sbjct: 386 NGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLT 445
Query: 389 ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWEL 448
++ YN +DGLCKN + EA+ELF + N ++ I ++CLIDGLCK K+E A EL
Sbjct: 446 PESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAREL 505
Query: 449 FQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR 508
F LS GL PNV+TY +MIHGLC GQ++ A DLFL ME KG P+ V FNT+M GF +
Sbjct: 506 FNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQ 565
Query: 509 NNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISI-MLQKD 548
N+E K +L+ +M+ F P SI + +L KD
Sbjct: 566 NDEMQKVV--ELLQEMA---EKDFSPDASTISIVVDLLSKD 601
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 244/499 (48%), Positives = 322/499 (64%), Gaps = 41/499 (8%)
Query: 53 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 112
IT +A FD M+R HP PP +SSFN L G LAK HY + SL+ + GL PDL+T
Sbjct: 70 ITAIQAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFT 128
Query: 113 HSILINC----------------------------------------RIMEAAALFTKLR 132
SIL NC RI EA LF +++
Sbjct: 129 LSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQ 188
Query: 133 VFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC 192
GC P+ TY TLI GLC+TG+ +AL L +EM N ++GV CKP +TY+ IIDG+C
Sbjct: 189 KLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLC 248
Query: 193 KEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVV 252
K G D+A ELF +MK + + P+V++Y++LIH F A W+++K LF +M+DQGV P++V
Sbjct: 249 KVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMV 308
Query: 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSM 312
TFSV++D LCK GK+ EA +LL++MIQ G+ PN YN+L+DGFC+ G +N A+ELF+SM
Sbjct: 309 TFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSM 368
Query: 313 ESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQV 372
S G D +SYTTLINGYCKT V+EA+NLY +ML G P V TY TL GLF+ +V
Sbjct: 369 PSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKV 428
Query: 373 EHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCL 432
A KLF M+ V+A++ IY F+DGLCKN + EA+ELF + + ++L+I +YSCL
Sbjct: 429 GDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCL 488
Query: 433 IDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV 492
IDGLCK GKLETAWELF+ LS+ GL P+VVTYNIMIHG C GQ+D A+ LF ME G
Sbjct: 489 IDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGC 548
Query: 493 EPDCVIFNTIMLGFIRNNE 511
PD + +NT++ GF N+
Sbjct: 549 TPDIIAYNTLLCGFCEGNK 567
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/537 (45%), Positives = 334/537 (62%), Gaps = 47/537 (8%)
Query: 53 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 112
+T AL F M+R P+P +SSFN L LAK KHY V SL+ ++ +GL D T
Sbjct: 48 VTATHALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106
Query: 113 HSILINC----------------------------------------RIMEAAALFTKLR 132
+IL+NC RI EA LF +++
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166
Query: 133 VFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC 192
GC PDV TY TLI GLC TG+ +AL L +EM N + + CKP+ +TYN I+DG+C
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226
Query: 193 KEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVV 252
K G D+A +LF +MK + + P++++YNSLIH F A W E+KRL +M+DQG+ P++V
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMV 286
Query: 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSM 312
TF+V++D LCK GK+ EA +LL +MI+ G+ P+ YN+L++GFC+ G +N A+ELFVSM
Sbjct: 287 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 346
Query: 313 ESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQV 372
S GC DV+SY LINGY KT VEEA+ LY +ML G RP V+TY +L G+F +V
Sbjct: 347 PSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKV 406
Query: 373 EHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCL 432
+ A KLF M+ + +A ++Y Y F+DGLCKN + EA++LF + +S ++L+I + +CL
Sbjct: 407 DDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCL 466
Query: 433 IDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV 492
IDGLCK GKLETAWELF+ LS G PNVVTY IMIHG C +GQ+DKA+ L MEA G
Sbjct: 467 IDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGC 526
Query: 493 EPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISI-MLQKD 548
PD + +NT+M GF +N+ + +L+ +M+ P + CSI + ML KD
Sbjct: 527 TPDIITYNTLMRGFYESNKLEEVV--QLLHRMA---QKDVSPDAITCSIVVDMLSKD 578
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/557 (43%), Positives = 332/557 (59%), Gaps = 46/557 (8%)
Query: 3 TSSISENEPSDPTT-----TAKLKESLRLTVKDGASIEKFLKERSKSSGQGDINLITPNE 57
+SS+ + P+ P++ +A +SL ++ ++ + F ++ S IT +
Sbjct: 20 SSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQQQLSMFLHNCKTGNITATQ 79
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 117
A F M+ +P+PP +SSF L LAK KHY V L+ ++ +G+ PD T +IL+
Sbjct: 80 AFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138
Query: 118 NC----------------------------------------RIMEAAALFTKLRVFGCE 137
NC RI +AA LFT+++ GC
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198
Query: 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV 197
P+ TY TL+ GLCRTG+ +AL L +EM N + +G+ KP ++Y+ IID +CK+
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRE 258
Query: 198 DKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVI 257
D+A +LF +MK + + P V++Y SLIH F W EAKRLF +M++QGV PNVVTF+V+
Sbjct: 259 DEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVL 318
Query: 258 VDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC 317
+D LCK GK+ EA LL++MIQ G+ PN YN+L++GFCL G +N A+ELFVSM S GC
Sbjct: 319 IDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGC 378
Query: 318 MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALK 377
DV+ YT LINGYCKT VEEA+ LY ML G RP V TY L GLF+ +V A K
Sbjct: 379 EPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKK 438
Query: 378 LFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC 437
LF M+ + D YIY F++GLCKNG + EA+ELF + + +LDI ++CLIDGLC
Sbjct: 439 LFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLC 498
Query: 438 KIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCV 497
K GKLETAWELF+ L + L P+VVTYNIMIH C GQ+ KA+ LF ME G PD +
Sbjct: 499 KAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKI 558
Query: 498 IFNTIMLGFIRNNETSK 514
+ T++ GF + + K
Sbjct: 559 TYATLIRGFFESKKLEK 575
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/524 (44%), Positives = 319/524 (60%), Gaps = 60/524 (11%)
Query: 34 IEKFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDT 93
+E+FL+ KS GD L +EAL F+ M+ M +P +S FN LFG LAK K Y
Sbjct: 73 LEQFLEINCKS---GDFTL---HEALHFFNQMIHMQTTPA-LSRFNNLFGALAKKKQYLH 125
Query: 94 VLSLFKRLNSTGLFPDLYTHSILINC---------------------------------- 119
V+S+ R+NS GL + + +IL+NC
Sbjct: 126 VISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVK 185
Query: 120 ------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 173
+I EA +F + VF C P T LI+GLCRTG+T AL L E M NGN +F
Sbjct: 186 GLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDF 245
Query: 174 GVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWN 233
G+ CKP V+Y+ IID +CK+G V++A E F++MK++ I PNVVTY SL+H A +W
Sbjct: 246 GINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWE 305
Query: 234 EAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLM 293
EAKRLFI+M+D G+ P+VVTFSV++ LCK GK++EAS L DLM+Q V P+T YN L+
Sbjct: 306 EAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILI 365
Query: 294 DGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR 353
+G+CL G V+ K++F+SM + C HD SY+ L+ YCK V A+ LYR+M+ +GI+
Sbjct: 366 EGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQ 425
Query: 354 PTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTY---IYNTFIDGLCKNGFVLEA 410
PTV+TYS +V A KLF E+Q D+ D+ IYN ++DGLCKNG V EA
Sbjct: 426 PTVITYS----------KVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEA 475
Query: 411 LELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470
L++F + N K+ ++ ++ LI+G+C+ KLE AWELF L L P+VVTY IMI+G
Sbjct: 476 LDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYG 535
Query: 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSK 514
LC GQ KA+DLFL+ME KG P+ V FNT+M G N+E K
Sbjct: 536 LCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPK 579
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 237/557 (42%), Positives = 330/557 (59%), Gaps = 54/557 (9%)
Query: 3 TSSISENEPSDPTT-----TAKLKESLRLTVKDGASIEKFLKERSKSSGQGDINLITPNE 57
+SS+ + P+ P++ +A +SL ++ ++ + F ++ S IT +
Sbjct: 20 SSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQQQLSMFLHNCKTGNITAIQ 79
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 117
A F M+ +P+PP +SSF L LAK KHY V L+ ++ +G+ PD T +IL+
Sbjct: 80 AFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILL 138
Query: 118 NC----------------------------------------RIMEAAALFTKLRVFGCE 137
NC RI +AA LFT+++ GC
Sbjct: 139 NCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCT 198
Query: 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV 197
P+ TY TL+ GLCRTG+ +AL L +EM N + +G+ KP ++Y+ IID +CK+
Sbjct: 199 PNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRE 258
Query: 198 DKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVI 257
D+A +LF +MK + + P V++Y SL+ W EAKRLF +M++QGV PNVVTF+V+
Sbjct: 259 DEARDLFEEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVL 310
Query: 258 VDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC 317
+D LCK GK+ EA LL++MIQ G+ PN YN+L++GFCL G +N A+ELFVSM S GC
Sbjct: 311 IDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGC 370
Query: 318 MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALK 377
DV+ YT LINGYCKT VEEA+ LY ML G RP V TY L GLF+ +V A K
Sbjct: 371 EPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKK 430
Query: 378 LFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC 437
LF M+ + D YIY F++GLCKNG + EA+ELF + + +LDI ++CLIDGLC
Sbjct: 431 LFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLC 490
Query: 438 KIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCV 497
K GKLETAWELF+ L + L P+VVTYNIMIH C GQ+ KA+ LF ME G PD +
Sbjct: 491 KAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKI 550
Query: 498 IFNTIMLGFIRNNETSK 514
+ T++ GF + + K
Sbjct: 551 TYATLIRGFFESKKLEK 567
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 230/537 (42%), Positives = 317/537 (59%), Gaps = 72/537 (13%)
Query: 53 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 112
+T AL F M+R P+P +SSFN L LAK KHY V SL+ ++ +GL D T
Sbjct: 48 VTATHALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCT 106
Query: 113 HSILINC----------------------------------------RIMEAAALFTKLR 132
+IL+NC RI EA LF +++
Sbjct: 107 LNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQ 166
Query: 133 VFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC 192
GC PDV TY TLI GLC TG+ +AL L +EM N + + CKP+ +TYN I+DG+C
Sbjct: 167 KLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLC 226
Query: 193 KEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVV 252
K G D+A +LF +MK + + PN +M+DQG+ P++V
Sbjct: 227 KVGREDEAKQLFEEMKTQGMIPN-------------------------EMLDQGLQPDMV 261
Query: 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSM 312
TF+V++D LCK GK+ EA +LL +MI+ G+ P+ YN+L++GFC+ G +N A+ELFVSM
Sbjct: 262 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 321
Query: 313 ESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQV 372
S GC DV+SY LINGY KT VEEA+ LY +ML G RP V+TY +L G+F +V
Sbjct: 322 PSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKV 381
Query: 373 EHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCL 432
+ A KLF M+ + +A ++Y Y F+DGLCKN + EA++LF + +S ++L+I + +CL
Sbjct: 382 DDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCL 441
Query: 433 IDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV 492
IDGLCK GKLETAWELF+ LS G PNVVTY IMIHG C +GQ+DKA+ L MEA G
Sbjct: 442 IDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGC 501
Query: 493 EPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISI-MLQKD 548
PD + +NT+M GF +N+ + +L+ +M+ P + CSI + ML KD
Sbjct: 502 TPDIITYNTLMRGFYESNKLEEVV--QLLHRMA---QKDVSPDAITCSIVVDMLSKD 553
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 220/521 (42%), Positives = 313/521 (60%), Gaps = 34/521 (6%)
Query: 2 PTSSISENEPSDPTTTAKLKESLRLTVKDGASIEKFLKERSKSSGQGDINLITPNEALCI 61
P+S+ + + P + L E R++++ G + F+ K + IT +AL
Sbjct: 35 PSSNPQISSANHPKSLHALSE--RISLQHGLPM--FIHNCKKGN-------ITSTQALQF 83
Query: 62 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-- 119
FD M+R + SFN+L G LAK KHY V SL+K+++ GL P+ +T +ILINC
Sbjct: 84 FDLMMR------SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLC 137
Query: 120 ---RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 176
R+ E + + G PDV TY +LI GLC A LF M +
Sbjct: 138 NVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQK------LG 191
Query: 177 CKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE------NINPNVVTYNSLIHCFSHAD 230
C P+ VTY T+I G+C+ G ++ A++L +M + N PN+ +YN +I
Sbjct: 192 CWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIG 251
Query: 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYN 290
W EAKRLF +M+DQGV P+VVTFS ++D LCK G + EA + L+ M+ G+ P+ F +
Sbjct: 252 KWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFT 311
Query: 291 TLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350
+L++GFCL G ++ AKELF+SM S G DV+SYT LI GYCKT NVEEA+ LY +ML
Sbjct: 312 SLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRV 371
Query: 351 GIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEA 410
G P + T+ L GLF +V A KLF ++ + V + YI + F+DGLCKNG + EA
Sbjct: 372 GKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEA 431
Query: 411 LELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470
+ELF + + +LDI S++CLIDGLCK KLETAWELF+ LS+ GL P+VVTY IMI+G
Sbjct: 432 MELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMING 491
Query: 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNE 511
C +GQ+D A+ LF ME G P+ + ++ ++ GF +NN+
Sbjct: 492 FCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNK 532
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/473 (44%), Positives = 288/473 (60%), Gaps = 23/473 (4%)
Query: 53 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 112
I+ +A FD M+R + SFN L LAK +HY V SL+K+++ GL+PDL T
Sbjct: 75 ISVTQAHQFFDLMMR------SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLT 128
Query: 113 HSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMA 167
+ILINC RI E A + G PDV T+ TLI GLC I A LF M
Sbjct: 129 LNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQ 188
Query: 168 NGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE------NINPNVVTYNS 221
+ C P+ VTY T+I G+C G ++ A++ +M ++ N PNV++Y+
Sbjct: 189 K------LGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSI 242
Query: 222 LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281
+I +W EA LF +M+DQGV PNVVTFSV++D LCK G++ +A +LL++MIQIG
Sbjct: 243 IIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIG 302
Query: 282 VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEAL 341
+ PN F Y +L+ GFCL G +N AKELFVSM S G DV+SY LINGYCKT VEEA+
Sbjct: 303 IVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAM 362
Query: 342 NLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGL 401
L+ +ML G+ P V T L LF +V+ A +LF ++ + D I F+DGL
Sbjct: 363 KLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGL 422
Query: 402 CKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNV 461
CKNG++ EA++LF + + +LDI ++ CLIDGLCK GKLETAWELF+ L G+ P+
Sbjct: 423 CKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDA 482
Query: 462 VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSK 514
+ Y+ MIHG C GQ+DKA+ LF ME G PD + ++ +M GF +N+ K
Sbjct: 483 MAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEK 535
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/518 (40%), Positives = 290/518 (55%), Gaps = 47/518 (9%)
Query: 37 FLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLS 96
FL + +N T ++AL F+ ML MHP PP ++ F L + K KHY TVLS
Sbjct: 31 FLSSSHNTFHSKSLNFNTLDDALSSFNRMLHMHP-PPSIADFTKLLISITKMKHYSTVLS 89
Query: 97 LFKRLNSTGLFPDLYTHSILINC------------------------------------- 119
L +++S G+ P++YT +ILIN
Sbjct: 90 LSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLC 149
Query: 120 ---RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 176
+I E LF K+ G +P+V TY TLINGLC+ G T A+ L M GN
Sbjct: 150 VEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGN------ 203
Query: 177 CKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAK 236
C+PD V Y +IID +CK+ V +A LF +M + I+P++ TYNSLIH + +W
Sbjct: 204 CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVT 263
Query: 237 RLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGF 296
L +M++ + PNVV FS +VD LCK GK+ EA ++D+MI+ GV PN YN LMDG
Sbjct: 264 ALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGH 323
Query: 297 CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV 356
CL ++ A ++F +M G DVVSY+TLINGYCK + +E+A+ L+ +M K + P
Sbjct: 324 CLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNT 383
Query: 357 VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCA 416
VTYSTL GL V +++ A+ LF EM D Y +D LCKN + EA+ L A
Sbjct: 384 VTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKA 443
Query: 417 IGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQ 476
I S + DI Y+ +IDG+C+ G+LE A +LF +LS GL PNV TY IMI+GLC G
Sbjct: 444 IEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGL 503
Query: 477 MDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSK 514
+ +A LF +M+ KG P+ +N I GF+RNNET +
Sbjct: 504 LAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLR 541
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 598 | ||||||
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.770 | 0.731 | 0.395 | 1.1e-89 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.770 | 0.750 | 0.383 | 2.8e-89 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.779 | 0.850 | 0.378 | 5.3e-88 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.770 | 0.731 | 0.374 | 1.8e-87 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.770 | 0.732 | 0.378 | 2.3e-87 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.770 | 0.727 | 0.378 | 3.7e-87 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.764 | 0.726 | 0.369 | 4.4e-84 | |
| TAIR|locus:2026172 | 485 | NG1 "novel gene 1" [Arabidopsi | 0.737 | 0.909 | 0.394 | 7.2e-84 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.720 | 0.746 | 0.370 | 1.5e-81 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.747 | 0.701 | 0.376 | 6e-80 |
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 188/475 (39%), Positives = 287/475 (60%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 117
AL + M+++ P V+ ++L G N+ D V SL ++ G PD +T + LI
Sbjct: 135 ALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAV-SLVGQMVEMGYQPDSFTFNTLI 193
Query: 118 NC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
+ R EA AL ++ V GC+PD+ TY ++NGLC+ G +AL+L ++M G E
Sbjct: 194 HGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE 253
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
GVV YNTIID +C V+ A+ LF +M ++ I PNVVTYNSLI C + W
Sbjct: 254 PGVVI------YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 307
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++PNVVTFS ++D K GK+ EA +L D MI+ + P+ F Y++L
Sbjct: 308 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 367
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK +F M S C +VV+Y TLI G+CK K V+E + L+R+M +G+
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL G F+ + ++A +F +M + V D Y+ +DGLC NG V AL
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + SK E DI +Y+ +I+G+CK GK+E W+LF SLS G+ PNVVTY M+ G C
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFC 547
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
G ++A LF +M+ +G PD +NT++ +R+ + K++ +L+ +M SC
Sbjct: 548 RKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGD--KAASAELIREMRSC 600
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 182/475 (38%), Positives = 284/475 (59%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL I M+++ P V+ ++L G N+ + V +L ++ G PD T
Sbjct: 119 ALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAV-ALVDQMVEMGYQPDTVTFTTLV 177
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + + + EA AL ++ V GC+PD+ TY +INGLC+ G +ALNL +M G E
Sbjct: 178 HGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE 237
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
D V Y+T+ID +CK VD A+ LF +M ++ I P+V TY+SLI C + W
Sbjct: 238 ------ADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRW 291
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++PNVVTF+ ++D K GK+ EA +L D MIQ + PN YN+L
Sbjct: 292 SDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSL 351
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ A+++F M S C+ DVV+Y TLING+CK K V + + L+R M +G+
Sbjct: 352 INGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGL 411
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL G F+ ++A +F +M + V + YNT +DGLCKNG + +A+
Sbjct: 412 VGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMV 471
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + SK E DI +Y+ + +G+CK GK+E W+LF SLS G+ P+V+ YN MI G C
Sbjct: 472 VFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFC 531
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
G ++A+ LF+ M+ G PD +NT++ +R+ + K++ +L+ +M SC
Sbjct: 532 KKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGD--KAASAELIKEMRSC 584
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 183/483 (37%), Positives = 287/483 (59%)
Query: 23 SLRLTVKDGASIEKF-LKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNIL 81
S R V+ +S+ L+ER + DI L N+A+ +F M++ P P V FN L
Sbjct: 36 SCRCWVRASSSVSGGDLRERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPSIVD-FNRL 91
Query: 82 FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAALFTKLRVFGC 136
+ K K YD V+SL K++ G+ DLYT +I+INC ++ A ++ K+ G
Sbjct: 92 LSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGY 151
Query: 137 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF 196
EPD T +L+NG CR A++L ++M E G KPD V YN IID +CK
Sbjct: 152 EPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV----EIGY--KPDIVAYNAIIDSLCKTKR 205
Query: 197 VDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSV 256
V+ A + F +++ + I PNVVTY +L++ ++ W++A RL M+ + + PNV+T+S
Sbjct: 206 VNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSA 265
Query: 257 IVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG 316
++D KNGK+ EA L + M+++ + P+ Y++L++G CL R++ A ++F M S G
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325
Query: 317 CMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHAL 376
C+ DVVSY TLING+CK K VE+ + L+R+M +G+ VTY+TL G F+ V+ A
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385
Query: 377 KLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGL 436
+ F +M ++ D + YN + GLC NG + +AL +F + + +LDI++Y+ +I G+
Sbjct: 386 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGM 445
Query: 437 CKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV-EPD 495
CK GK+E AW LF SLS GL P++VTY M+ GLC G + + L+ M+ +G+ + D
Sbjct: 446 CKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKND 505
Query: 496 CVI 498
C +
Sbjct: 506 CTL 508
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 178/475 (37%), Positives = 284/475 (59%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G +K ++L ++ TG P+ T
Sbjct: 135 ALAVLGKMMKLGYEPNIVTLSSLLNG-YCHSKRISEAVALVDQMFVTGYQPNTVTFNTLI 193
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + ++ + EA AL ++ GC+PD+ TY ++NGLC+ G T +A NL +M G E
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE 253
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
GV+ YNTIIDG+CK +D A+ LF +M+ + I PNVVTY+SLI C + W
Sbjct: 254 PGVLI------YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++P+V TFS ++D K GK+ EA +L D M++ + P+ Y++L
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK++F M S C DVV+Y TLI G+CK K VEE + ++R+M +G+
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+ L GLF+ + A ++F EM + V + YNT +DGLCKNG + +A+
Sbjct: 428 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMV 487
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + SK E I +Y+ +I+G+CK GK+E W+LF +LS G+ P+VV YN MI G C
Sbjct: 488 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 547
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
G ++A LF +M+ G P+ +NT++ +R+ + S+ +L+ +M SC
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA--ELIKEMRSC 600
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 180/475 (37%), Positives = 281/475 (59%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G K ++L ++ P+ T
Sbjct: 134 ALAVLGKMMKLGYEPDIVTLSSLLNG-YCHGKRISEAVALVDQMFVMEYQPNTVTFNTLI 192
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + ++ + EA AL ++ GC+PD+FTY T++NGLC+ G +AL+L ++M G E
Sbjct: 193 HGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE 252
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
D V Y TIID +C V+ A+ LF +M ++ I PNVVTYNSLI C + W
Sbjct: 253 ------ADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 306
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++PNVVTFS ++D K GK+ EA +L D MI+ + P+ F Y++L
Sbjct: 307 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK +F M S C +VV+Y TLI G+CK K VEE + L+R+M +G+
Sbjct: 367 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL GLF+ + A K+F +M + V D Y+ +DGLCK G + +AL
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALV 486
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + SK E DI +Y+ +I+G+CK GK+E W+LF SLS G+ PNV+ Y MI G C
Sbjct: 487 VFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC 546
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
G ++A LF +M+ G P+ +NT++ +R+ + K++ +L+ +M SC
Sbjct: 547 RKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGD--KAASAELIKEMRSC 599
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 180/475 (37%), Positives = 283/475 (59%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G K ++L ++ G PD T
Sbjct: 139 ALALLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQMVEMGYRPDTITFTTLI 197
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + ++ + EA AL ++ GC+P++ TY ++NGLC+ G T +ALNL +M E
Sbjct: 198 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE 257
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
D V +NTIID +CK VD A+ LF +M+ + I PNVVTY+SLI C W
Sbjct: 258 ------ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 311
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A +L M+++ ++PN+VTF+ ++D K GK EA +L D MI+ + P+ F YN+L
Sbjct: 312 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSL 371
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK++F M S C DVV+Y TLI G+CK+K VE+ L+R+M +G+
Sbjct: 372 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 431
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL GLF ++A K+F +M + V D Y+ +DGLC NG + +ALE
Sbjct: 432 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALE 491
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + S+ +LDI Y+ +I+G+CK GK++ W+LF SLS G+ PNVVTYN MI GLC
Sbjct: 492 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 551
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
+ + +A+ L M+ G P+ +NT++ +R+ + K++ +L+ +M SC
Sbjct: 552 SKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD--KAASAELIREMRSC 604
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 175/474 (36%), Positives = 282/474 (59%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G +K ++L ++ G PD +T
Sbjct: 137 ALAVLAKMMKLGYEPDIVTLSSLLNG-YCHSKRISDAVALVDQMVEMGYKPDTFTFTTLI 195
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + ++ + EA AL ++ GC+PD+ TY T++NGLC+ G +ALNL +M
Sbjct: 196 HGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAAR-- 253
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
K + V +NTIID +CK V+ A++LF +M+ + I PNVVTYNSLI+C + W
Sbjct: 254 ----IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRW 309
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++PNVVTF+ ++D K GK+ EA +L + MIQ + P+T YN L
Sbjct: 310 SDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLL 369
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK++F M S C+ ++ +Y TLING+CK K VE+ + L+R+M +G+
Sbjct: 370 INGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGL 429
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+T+ G F+ + A +F +M N V D Y+ + GLC G + AL
Sbjct: 430 VGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALV 489
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + S+ EL+I Y+ +I+G+CK GK+ AW+LF SLS + P+VVTYN MI GLC
Sbjct: 490 IFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS---IKPDVVTYNTMISGLC 546
Query: 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526
+ + +A DLF M+ G P+ +NT++ +R+ + + S+ +L+ +M S
Sbjct: 547 SKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASA--ELIKEMRS 598
|
|
| TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
Identities = 181/459 (39%), Positives = 278/459 (60%)
Query: 41 RSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKR 100
R+ S+ + +NL E + +F M++ P P V F+ + +AK+K+YD V+SLF
Sbjct: 39 RTFSTKRSSMNL---EEEIDLFCKMIQSRPLPSIVD-FSKVLSKIAKSKNYDLVISLFHH 94
Query: 101 LNSTGLFPDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH 155
+ G+ DLY+++I+INC R + A ++ K+ FG EPDV T ++LING C+
Sbjct: 95 MEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNR 154
Query: 156 TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215
A++L +M E G +PD V YNTIIDG CK G V+ A+ELF +M+ + + +
Sbjct: 155 VFDAIDLVSKME----EMGF--RPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRAD 208
Query: 216 VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLD 275
VTYNSL+ + W++A RL M+ + + PNV+TF+ ++D K GK EA +L +
Sbjct: 209 AVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYE 268
Query: 276 LMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTK 335
M + V P+ F YN+L++G C+ GRV+ AK++ M + GC+ DVV+Y TLING+CK+K
Sbjct: 269 EMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSK 328
Query: 336 NVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYN 395
V+E L+R+M +G+ +TY+T+ G F+ + + A ++F M D + Y+
Sbjct: 329 RVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTYS 385
Query: 396 TFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV 455
+ GLC N V +AL LF + S+ ELDI +Y+ +I G+CKIG +E AW+LF+SLS
Sbjct: 386 ILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCK 445
Query: 456 GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP 494
GL P+VV+Y MI G C Q DK+ L+ M+ G+ P
Sbjct: 446 GLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 164/443 (37%), Positives = 261/443 (58%)
Query: 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT----- 112
AL + M+++ P V+ ++L G K ++L ++ G PD T
Sbjct: 139 ALALLGKMMKLGYEPSIVTLSSLLNG-YCHGKRISDAVALVDQMVEMGYRPDTITFTTLI 197
Query: 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 172
H + ++ + EA AL ++ GC+P++ TY ++NGLC+ G +A NL +M E
Sbjct: 198 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 257
Query: 173 FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232
VV Y+T+ID +CK D A+ LF +M+++ + PNV+TY+SLI C + + W
Sbjct: 258 ANVVI------YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERW 311
Query: 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292
++A RL M+++ ++PNVVTF+ ++D K GK+ EA +L D MI+ + P+ F Y++L
Sbjct: 312 SDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 371
Query: 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++GFC+ R++ AK +F M S C +VV+Y TLING+CK K ++E + L+R+M +G+
Sbjct: 372 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGL 431
Query: 353 RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412
VTY+TL G F+ ++A +F +M + V + YNT +DGLCKNG + +A+
Sbjct: 432 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMV 491
Query: 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
+F + SK E I +Y+ +I+G+CK GK+E W+LF SLS G+ P+V+ YN MI G C
Sbjct: 492 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFC 551
Query: 473 NDGQMDKAHDLFLDMEAKGVEPD 495
G ++A LF M G PD
Sbjct: 552 RKGLKEEADALFRKMREDGPLPD 574
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
Identities = 173/460 (37%), Positives = 256/460 (55%)
Query: 73 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN--C---RIMEAAAL 127
P +F+ L L L L R+ G PDL T + L+N C + EA L
Sbjct: 156 PNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLL 215
Query: 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTI 187
K+ +GC+P+ TY ++N +C++G T +A+ L +M N K D V Y+ I
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN------IKLDAVKYSII 269
Query: 188 IDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV 247
IDG+CK G +D A LF +M+ + I N++TYN LI F +A W++ +L M+ + +
Sbjct: 270 IDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI 329
Query: 248 HPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKE 307
+PNVVTFSV++D K GK+ EA L MI G+ P+T Y +L+DGFC ++ A +
Sbjct: 330 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQ 389
Query: 308 LFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367
+ M S GC ++ ++ LINGYCK +++ L L+RKM +G+ VTY+TL G
Sbjct: 390 MVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFC 449
Query: 368 EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDII 427
E+ ++ A +LF EM V + Y +DGLC NG +ALE+F I SK ELDI
Sbjct: 450 ELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIG 509
Query: 428 SYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487
Y+ +I G+C K++ AW+LF SL G+ P V TYNIMI GLC G + +A LF M
Sbjct: 510 IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKM 569
Query: 488 EAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527
E G PD +N ++ + + + +KS KL+ ++ C
Sbjct: 570 EEDGHAPDGWTYNILIRAHLGDGDATKSV--KLIEELKRC 607
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 598 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-29 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-24 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-22 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-10 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 8e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 1e-32
Identities = 103/412 (25%), Positives = 181/412 (43%), Gaps = 59/412 (14%)
Query: 73 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD--LYTHSILINCRIMEAAALFT- 129
P +S+FN+L A ++ D L + + + GL D LYT I + + A+F
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 130 --KLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV----CKPDTVT 183
++ G E +V T+ LI+G R G ++A G +G++ KPD V
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAG----------QVAKAFGAYGIMRSKNVKPDRVV 544
Query: 184 YNTIIDGVCKEGFVDKAMELFLQMKDEN--INPNVVTYNSLIHCFSHADDWNEAKRLFIK 241
+N +I + G VD+A ++ +MK E I+P+ +T +L+ ++A + AK ++ +
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY-Q 603
Query: 242 MMDQ-GVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG 300
M+ + + +++ V+ + G + A + D M + GV P+ ++ L+D G
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663
Query: 301 RVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYS 360
++ A E+ G VSY++L+ KN ++AL LY + +RPTV T +
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723
Query: 361 TLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS 420
L L E +Q+ AL++ EM+ GLC N
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRL--------------GLCPN---------------- 753
Query: 421 KYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472
I+YS L+ + + +L G+ PN+V + GLC
Sbjct: 754 -----TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-29
Identities = 79/386 (20%), Positives = 167/386 (43%), Gaps = 12/386 (3%)
Query: 179 PDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRL 238
P T+N ++ +D A+ + +++ + + Y +LI + + + +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 239 FIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298
F +M++ GV NV TF ++D + G++ +A +M V P+ V+N L+
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 299 TGRVNHAKELFVSM--ESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV 356
+G V+ A ++ M E++ D ++ L+ V+ A +Y+ + I+ T
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 357 VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCA 416
Y+ + + AL ++D+M+ V D ++ +D G + +A E+
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 417 IGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQ 476
+L +SYS L+ + A EL++ + + L P V T N +I LC Q
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 477 MDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKT 536
+ KA ++ +M+ G+ P+ + ++ +++ R ++ L+SQ +P
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL--DLLSQAK---EDGIKPNL 789
Query: 537 LICSISI-----MLQKDMSPGDTMFS 557
++C +K + G+ + S
Sbjct: 790 VMCRCITGLCLRRFEKACALGEPVVS 815
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-29
Identities = 113/475 (23%), Positives = 202/475 (42%), Gaps = 72/475 (15%)
Query: 75 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH-SILINCRIMEAAALFTKLRV 133
+ S+N+L G AK ++D L L+ R+ G+ PD+YT +L C + A ++
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
Query: 134 ----FGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIID 189
FG E DV N LI + G + A +F+ M + D +++N +I
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----------RRDCISWNAMIS 261
Query: 190 GVCKEGFVDKAMELFLQMKDENINPNVVT------------------------------- 218
G + G + +ELF M++ +++P+++T
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321
Query: 219 ----YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLL 274
NSLI + W EA+++F +M + + V+++ ++ KNG ++A
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETY 377
Query: 275 DLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT 334
LM Q V P+ +++ G ++ +L E G + VV LI Y K
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 335 KNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEM----QHNDVAAD 390
K +++AL ++ + K V++++++ GL ++ AL F +M + N V
Sbjct: 438 KCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLI 493
Query: 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQ 450
+ G G + A L IG D + L+D + G++ AW F
Sbjct: 494 AALSACARIGALMCGKEIHAHVLRTGIG-----FDGFLPNALLDLYVRCGRMNYAWNQFN 548
Query: 451 SLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG 505
S + +VV++NI++ G G+ A +LF M GV PD V F +++
Sbjct: 549 SHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 4e-24
Identities = 93/386 (24%), Positives = 154/386 (39%), Gaps = 64/386 (16%)
Query: 120 RIMEAAALFTKLRV-FGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCK 178
R EA LF L TY+ L+ ++ + + E
Sbjct: 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE------ 155
Query: 179 PDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRL 238
PD N ++ K G + A LF +M + N+ ++ ++I A ++ EA L
Sbjct: 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFAL 211
Query: 239 FIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298
F +M + G TF V++ G +L +++ GV +TFV L+D +
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271
Query: 299 TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVT 358
G + A+ +F M V++ +++ GY EEAL LY +M G+ T
Sbjct: 272 CGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 359 YSTLF-----LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALEL 413
+S + L L E + HA GL + GF
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHA------------------------GLIRTGF------- 356
Query: 414 FCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473
LDI++ + L+D K G++E A +F + R N++++N +I G N
Sbjct: 357 ---------PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGN 403
Query: 474 DGQMDKAHDLFLDMEAKGVEPDCVIF 499
G+ KA ++F M A+GV P+ V F
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 6e-22
Identities = 99/433 (22%), Positives = 182/433 (42%), Gaps = 59/433 (13%)
Query: 57 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS-I 115
EAL +F+ + P P S+++ L K V +++ + S+G PD Y + +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 116 L---INCRIM-EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 171
L + C ++ +A LF ++ E ++ ++ T+I GL G+ A LF EM
Sbjct: 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREM----- 215
Query: 172 EFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADD 231
+ + T+ ++ G +L + + + +LI +S D
Sbjct: 216 -WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 232 WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNT 291
+A+ +F D V ++ ++ +G EEA L M GV + F ++
Sbjct: 275 IEDARCVF----DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 292 LMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKG 351
++ F + HAK+ + G D+V+ T L++ Y K +E+A N++ +M P
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM-P-- 387
Query: 352 IRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEAL 411
R +++++ L G + A+++F+ M VA + + TF+ VL A
Sbjct: 388 -RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN---HVTFLA-------VLSA- 435
Query: 412 ELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV-GLLPNVVTYNIMIHG 470
C YS G E WE+FQS+S + P + Y MI
Sbjct: 436 ---CR------------YS---------GLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471
Query: 471 LCNDGQMDKAHDL 483
L +G +D+A+ +
Sbjct: 472 LGREGLLDEAYAM 484
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 77.8 bits (193), Expect = 4e-18
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 179 PDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSH 228
PD VTYNT+IDG CK+G V++A++LF +MK I PNV TY+ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-16
Identities = 59/273 (21%), Positives = 110/273 (40%), Gaps = 48/273 (17%)
Query: 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIH--CFSHADDWNEAKRLF 239
V N +I+ K +DKA+E+F + +++ V+++ S+I ++ +F
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKD----VISWTSIIAGLRLNNR---CFEALIF 477
Query: 240 IKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT 299
+ M + PN VT + + G + + +++ G+ + F+ N L+D +
Sbjct: 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537
Query: 300 GRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTY 359
GR+N+A F N DVVS+ L+ GY A+ L+ +M+ G+ P VT+
Sbjct: 538 GRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
Query: 360 STLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGN 419
+L V L+ F M+ + N
Sbjct: 593 ISLLCACSRSGMVTQGLEYFHSMEEK----------------------------YSITPN 624
Query: 420 SKYELDIISYSCLIDGLCKIGKLETAWELFQSL 452
K+ Y+C++D L + GKL A+ +
Sbjct: 625 LKH------YACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 3e-16
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473
D+++Y+ LIDG CK GK+E A +LF + + G+ PNV TY+I+I GLC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 9e-16
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCK 333
P+ YNTL+DG+C G+V A +LF M+ G +V +Y+ LI+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 89/411 (21%), Positives = 150/411 (36%), Gaps = 113/411 (27%)
Query: 261 LCKNGKMEEASRLLDLMIQIGVHPNTFVY------------------------------- 289
LC +G++E+A +LL+ M ++ V + Y
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 290 ----NTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYR 345
N ++ F G + HA +F M D+ S+ L+ GY K +EAL LY
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYH 176
Query: 346 KMLPKGIRPTVVTYSTLFL---GLF------EVH-------------------------- 370
+ML G+RP V T+ + G+ EVH
Sbjct: 177 RMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236
Query: 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYS 430
V A +FD M D + +N I G +NG LE LELF + + D+++ +
Sbjct: 237 DVVSARLVFDRMPRRDCIS----WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
Query: 431 CLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490
+I +G E+ + + G +V N +I + G +A +F ME K
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352
Query: 491 GVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDMS 550
D V + ++ G+ +N P + + ++M Q ++S
Sbjct: 353 ----DAVSWTAMISGYEKN----------------------GLPDKALETYALMEQDNVS 386
Query: 551 PGDTMFSTAL-----LMDPDCSCDLESLIHNTDLDQDELAYVITNSTWLLM 596
P + ++ L L D D L L L ++YV+ + + M
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGL----ISYVVVANALIEM 433
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-15
Identities = 74/367 (20%), Positives = 152/367 (41%), Gaps = 22/367 (5%)
Query: 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203
N +++ R G + A +F +M + D ++N ++ G K G+ D+A+ L
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMP----------ERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK 263
+ +M + P+V T+ ++ D + + ++ G +V + ++ K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 264 NGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVS 323
G + A + D M + + +N ++ G+ G ELF +M D+++
Sbjct: 235 CGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
Query: 324 YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383
T++I+ + ++ ++ G V ++L + A K+F M+
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 384 HNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLE 443
D + + I G KNG +ALE + + D I+ + ++ +G L+
Sbjct: 351 TKDAVS----WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503
+L + R GL+ VV N +I +DKA ++F ++ K D + + +I+
Sbjct: 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSII 462
Query: 504 LGFIRNN 510
G NN
Sbjct: 463 AGLRLNN 469
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.7 bits (172), Expect = 3e-15
Identities = 28/47 (59%), Positives = 34/47 (72%)
Query: 320 DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGL 366
DVV+Y TLI+GYCK VEEAL L+ +M +GI+P V TYS L GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 5e-15
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 214 PNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK 263
P+VVTYN+LI + EA +LF +M +G+ PNV T+S+++D LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-14
Identities = 64/287 (22%), Positives = 123/287 (42%), Gaps = 33/287 (11%)
Query: 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV 197
P+V+T +N + G AL+++++M + GV KPD V ++ ++D G +
Sbjct: 614 PEVYT--IAVNSCSQKGDWDFALSIYDDMK----KKGV--KPDEVFFSALVDVAGHAGDL 665
Query: 198 DKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVI 257
DKA E+ + + I V+Y+SL+ S+A +W +A L+ + + P V T + +
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL 725
Query: 258 VDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC 317
+ LC+ ++ +A +L M ++G+ PNT Y+ L+ + +L + +G
Sbjct: 726 ITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
Query: 318 MHDVVSYTTLINGYCK------------------------TKNVEEALNLYRKMLPKGIR 353
++V + G C K AL +YR+ + G
Sbjct: 786 KPNLVMCRCIT-GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844
Query: 354 PTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDG 400
PT+ S + L H +L + + + + +T +DG
Sbjct: 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 1e-14
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK 193
PDV TYNTLI+G C+ G AL LF EM KP+ TY+ +IDG+CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG------IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.4 bits (166), Expect = 1e-14
Identities = 17/48 (35%), Positives = 33/48 (68%)
Query: 459 PNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF 506
P+VVTYN +I G C G++++A LF +M+ +G++P+ ++ ++ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 3e-14
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 249 PNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297
P+VVT++ ++D CK GK+EEA +L + M + G+ PN + Y+ L+DG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 9e-13
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 354 PTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK 403
P VVTY+TL G + +VE ALKLF+EM+ + + Y Y+ IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 30/222 (13%)
Query: 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVD 198
D F N L++ R G A N F + D V++N ++ G G
Sbjct: 523 DGFLPNALLDLYVRCGRMNYAWNQFN-----------SHEKDVVSWNILLTGYVAHGKGS 571
Query: 199 KAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ-GVHPNVVTFSVI 257
A+ELF +M + +NP+ VT+ SL+ S + + F M ++ + PN+ ++ +
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 258 VDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKEL-------FV 310
VD L + GK+ EA ++ M + P+ V+ L++ C R++ EL
Sbjct: 632 VDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA-C---RIHRHVELGELAAQHIF 684
Query: 311 SMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352
++ N V Y L N Y +E + + M G+
Sbjct: 685 ELDPN----SVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 58.1 bits (142), Expect = 2e-11
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 177 CKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208
KPD VTYNT+IDG+C+ G VD+A+EL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK 438
D YNT IDG CK G V EAL+LF + + ++ +YS LIDGLCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 56.2 bits (137), Expect = 1e-10
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 134 FGCEPDVFTYNTLINGLCRTGHTIVALNLFEEM 166
G +PDV TYNTLI+GLCR G A+ L +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (134), Expect = 3e-10
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 456 GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488
GL P+VVTYN +I GLC G++D+A +L +ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 9e-09
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 462 VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDC 496
VTYN +I GLC G++++A +LF +M+ +G+EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 1e-08
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 315 NGCMHDVVSYTTLINGYCKTKNVEEALNLYRKM 347
G DVV+Y TLI+G C+ V+EA+ L +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 1e-08
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 245 QGVHPNVVTFSVIVDELCKNGKMEEASRLLDLM 277
+G+ P+VVT++ ++D LC+ G+++EA LLD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 54/199 (27%), Positives = 77/199 (38%), Gaps = 33/199 (16%)
Query: 57 EALCIFDYMLRMHPSPPPVSSFNILFGCLA-------KNKHYDTVLSLFKRLNSTGLFP- 108
EAL F ML + P V+ L C K H L + G P
Sbjct: 473 EALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIH---AHVLRTGIGFDGFLPN 528
Query: 109 ---DLYTHSILINCRIMEAA-ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFE 164
DLY + C M A F E DV ++N L+ G G +A+ LF
Sbjct: 529 ALLDLY-----VRCGRMNYAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFN 578
Query: 165 EMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-NINPNVVTYNSLI 223
M E GV PD VT+ +++ + G V + +E F M+++ +I PN+ Y ++
Sbjct: 579 RMV----ESGV--NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632
Query: 224 HCFSHADDWNEAKRLFIKM 242
A EA KM
Sbjct: 633 DLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 6e-08
Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 5/50 (10%)
Query: 108 PDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR 152
PD+ T++ LI+ ++ EA LF +++ G +P+V+TY+ LI+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 2e-07
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 281 GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSME 313
G+ P+ YNTL+DG C GRV+ A EL ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-07
Identities = 54/248 (21%), Positives = 84/248 (33%), Gaps = 46/248 (18%)
Query: 298 LTGRVNHAKELFVSMESNGCMH-DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV 356
GR A ELF +E+ +Y L+ K++ +Y + G P
Sbjct: 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158
Query: 357 VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELF-- 414
+ + L + + A +LFDEM ++A+ + T I GL G EA LF
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS----WGTIIGGLVDAGNYREAFALFRE 214
Query: 415 ----------------------------------CAIGNSKYELDIISYSCLIDGLCKIG 440
C + D LID K G
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCG 273
Query: 441 KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFN 500
+E A +F + V +N M+ G G ++A L+ +M GV D F+
Sbjct: 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329
Query: 501 TIMLGFIR 508
++ F R
Sbjct: 330 IMIRIFSR 337
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-07
Identities = 21/35 (60%), Positives = 29/35 (82%)
Query: 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV 216
VTYNT+IDG+CK G V++A+ELF +MK+ I P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 5e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 217 VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV 251
VTYN+LI A EA LF +M ++G+ P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-07
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 462 VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV 492
VTYN +I G C G++++A +LF +M+ KGV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 7e-07
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENI 212
VTYN++I G CK G +++A+ELF +MK++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 322 VSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV 356
V+Y TLI+G CK VEEAL L+++M +GI P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (115), Expect = 3e-06
Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 5/261 (1%)
Query: 194 EGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV-HPNVV 252
+ A+ + L+ + + + + + + EA L + ++
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN-TFVYNTLMDGFCLTGRVNHAKELFVS 311
++ L K G++EEA LL+ +++ + PN L G+ A EL
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 312 MESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML--PKGIRPTVVTYSTLFLGLFEV 369
+ D+ + + + EEAL LY K L + L L +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 370 HQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429
+ E AL+L ++ + D K G EALE + + +
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA-LELDPDNAEAL 239
Query: 430 SCLIDGLCKIGKLETAWELFQ 450
L L ++G+ E A E +
Sbjct: 240 YNLALLLLELGRYEEALEALE 260
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 322 VSYTTLINGYCKTKNVEEALNLYRKML 348
V+Y +LI+GYCK +EEAL L+++M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 73 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC 119
P V ++N L K + L LF + G+ P++YT+SILI+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 9e-06
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 385 NDVAADTYIYNTFIDGLCKNGFVLEALELF 414
+ D YNT IDGLC+ G V EA+EL
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 461 VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP 494
+ TYN ++ L G D A + +M+A G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-05
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 321 VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRP 354
+ +Y L+ K + + AL + +M G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 287 FVYNTLMDGFCLTGRVNHAKELFVSMESNGC 317
YNTL+DG C GRV A ELF M+ G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 427 ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNV 461
++Y+ LIDGLCK G++E A ELF+ + G+ P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 217 VTYNSLIHCFSHADDWNEAKRLFIKMMDQGV 247
VTYNSLI + A EA LF +M ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 7e-05
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 422 YELDIISYSCLIDGLCKIGKLETAWELF 449
+ D+++Y+ LIDGLC+ G+++ A EL
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 216 VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHP 249
+ TYN+L+ + A D + A + +M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 287 FVYNTLMDGFCLTGRVNHAKELFVSMESNGC 317
YN+L+ G+C G++ A ELF M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 350 KGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383
KG++P VVTY+TL GL +V+ A++L DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 141 FTYNTLINGLCRTGHTIVALNLFEEM 166
TYN+LI+G C+ G AL LF+EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 54/230 (23%), Positives = 91/230 (39%), Gaps = 31/230 (13%)
Query: 75 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH-SILINCR----IMEAAALFT 129
V S+NIL + + LF R+ +G+ PD T S+L C + + F
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 130 KLRV-FGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTII 188
+ + P++ Y +++ L R G A N +M PD + ++
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---------ITPDPAVWGALL 664
Query: 189 DGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHAD--DWNEAKRLFIKMMDQG 246
+ V+ EL Q E ++PN V Y L+ C +AD W+E R+ M + G
Sbjct: 665 NACRIHRHVELG-ELAAQHIFE-LDPNSVGYYILL-CNLYADAGKWDEVARVRKTMRENG 721
Query: 247 VHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGF 296
+ VD C +E ++ + HP NT+++GF
Sbjct: 722 ---------LTVDPGCS--WVEVKGKVHAFLTDDESHPQIKEINTVLEGF 760
|
Length = 857 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (99), Expect = 3e-04
Identities = 49/243 (20%), Positives = 78/243 (32%), Gaps = 8/243 (3%)
Query: 197 VDKAMELFLQMKDENINPNVV-TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTF 254
+ +A+EL + + N ++ L EA L K ++ + PN
Sbjct: 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEAL 98
Query: 255 SVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSME- 313
+ L GK EEA LL+ + + P+ + G A EL+
Sbjct: 99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158
Query: 314 -SNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQV 372
+ L EEAL L K L L L ++ +
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218
Query: 373 EHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFC---AIGNSKYELDIISY 429
E AL+ +++ D +YN L + G EALE + Y L +
Sbjct: 219 EEALEYYEKALELDPDNAEALYN-LALLLLELGRYEEALEALEKALELDPDLYNLGLALL 277
Query: 430 SCL 432
L
Sbjct: 278 LLL 280
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 252 VTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282
VT++ ++ CK GK+EEA L M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (95), Expect = 8e-04
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 3/158 (1%)
Query: 193 KEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKM--MDQGVHPN 250
G ++A+EL + + +P++ + D+ EA L+ K +D ++
Sbjct: 107 ALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNEL 166
Query: 251 VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFV 310
+ L G+ EEA LL+ +++ + L + G+ A E +
Sbjct: 167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYY- 225
Query: 311 SMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348
+ + L + EEAL K L
Sbjct: 226 EKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 141 FTYNTLINGLCRTGHTIVALNLFEEM 166
TYNTLI+GLC+ G AL LF+EM
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 252 VTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNT 286
VT++ ++D LCK G++EEA L M + G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 392 YIYNTFIDGLCKNGFVLEALELF 414
YN+ I G CK G + EALELF
Sbjct: 1 VTYNSLISGYCKAGKLEEALELF 23
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 427 ISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457
++Y+ LI G CK GKLE A ELF+ + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 181 TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP 214
TYN ++ + K G D A+ + +MK + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 598 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.69 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.63 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.61 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.55 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.52 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.5 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.49 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.49 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.41 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.3 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.29 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.25 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.21 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.09 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.02 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.98 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.87 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.86 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.86 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.79 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.78 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.7 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.66 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.62 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.58 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.58 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.57 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.55 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.52 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.48 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.32 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.19 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.16 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.11 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.98 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.89 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.87 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.86 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.86 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.84 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.84 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.82 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.81 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.81 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.81 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.81 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.8 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.79 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.79 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.79 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.77 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.77 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.77 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.76 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.73 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.73 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.72 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.72 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.71 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.71 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.7 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.68 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.66 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.65 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.61 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.58 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.54 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.5 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.43 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.39 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.35 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.35 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.35 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.34 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.34 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.32 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.27 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.25 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.23 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.21 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.15 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.11 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.05 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.99 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.96 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.89 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.88 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.87 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.85 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.83 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.8 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.73 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.73 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.63 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.63 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.61 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.61 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.6 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.47 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.45 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.41 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.38 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.09 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.07 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.03 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.01 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.01 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.99 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.92 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.91 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.91 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.88 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.83 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.79 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.71 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.69 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.67 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.61 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.54 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.51 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.51 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.44 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.42 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.24 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.0 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.87 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.86 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.82 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.81 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.69 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.67 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.65 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.65 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.57 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.35 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.17 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.11 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.74 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.55 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.22 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.99 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.84 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.78 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.52 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.44 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.3 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.13 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.11 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.91 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.88 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.79 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.7 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.69 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.56 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.4 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.97 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.96 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.96 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.76 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.58 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.47 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.35 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.22 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.36 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.28 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.16 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 88.92 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.75 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.28 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 88.25 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.17 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.09 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.77 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.77 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.72 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 87.72 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.66 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.5 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.84 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.69 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.42 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 86.3 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.29 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.25 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.01 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.74 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.73 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.58 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.25 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.14 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 85.11 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.11 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.01 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.56 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.32 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.95 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.3 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 82.96 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.87 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 82.57 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 81.89 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.83 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.3 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.68 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.59 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 80.42 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-65 Score=532.63 Aligned_cols=502 Identities=17% Similarity=0.284 Sum_probs=427.9
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEA 124 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a 124 (598)
++.|++++|+++|+.|.+.+..+++...+..++..|.+.|..++|..+|+.|.. |+..+|+.++.. +++.|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHH
Confidence 467888899999988887776556777778888888888888888888888873 888888888877 88888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELF 204 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 204 (598)
.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.+ +.||..+|+.+|.+|++.|++++|.++|
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999998888888888899999999999999999999999988887 7888899999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMD--QGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
+.|...|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 9998888888988999999999999999999999988876 56788888899999999999999999999999988888
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 283 HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 88888999999999999999999999999988888888888999999999999999999999999888888888899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKL 442 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 442 (598)
+.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999988888888888899999999999999999999999888888888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHH
Q 047932 443 ETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----D-------------------GQMDKAHDLFLDMEAKGVEPDCVIF 499 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~ 499 (598)
++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|.+.|+.||..||
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 9999999999888888888888888765432 1 1236788888899888888998899
Q ss_pred HHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCC-CCChhhHHHhhhc--Cccc
Q 047932 500 NTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDM-SPGDTMFSTALLM--DPDC 566 (598)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~a~~~~~~~l~~--~P~~ 566 (598)
..++.+++..+....+.. +++.|... +..|+..+|+.++...++. ++|..+++.+.+. -|+-
T Consensus 851 ~~vL~cl~~~~~~~~~~~--m~~~m~~~---~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 851 SQVLGCLQLPHDATLRNR--LIENLGIS---ADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHHhcccccHHHHHH--HHHHhccC---CCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCc
Confidence 888887777888777777 88777666 6777777888877766654 4688888777754 4544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-63 Score=518.99 Aligned_cols=504 Identities=21% Similarity=0.328 Sum_probs=456.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHhHHHHHhc-----cHHHHHHHHHHHHHcCCCCCHhhHH
Q 047932 71 SPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYN 144 (598)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (598)
.+++...|..+...+.+.|++++|+++|++|...|+. ++..++..++.. ..++|..+|..|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 3367888999999999999999999999999999864 556666656554 78999999998874 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 145 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIH 224 (598)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 224 (598)
.++.+|++.|+++.|.++|+.|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCcCHHHHHHHHHHHHhcCCH
Q 047932 225 CFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQ--IGVHPNTFVYNTLMDGFCLTGRV 302 (598)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~ 302 (598)
+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999986 57899999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 303 NHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEM 382 (598)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 382 (598)
++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 047932 383 QHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV 462 (598)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 462 (598)
.+.|+.|+..+|+.++.+|++.|++++|..+|++|...++.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCccccchhH
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR----N-------------------NETSKSSRGK 519 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~ 519 (598)
+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~-- 833 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM-- 833 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH--
Confidence 9999999999999999999999999999999999999999866432 1 22367999
Q ss_pred HHHHHHhcccCCCCCChHHHHHHHH---HhCCCCCChhhHHHh-hhcCccccchhhHhhhhCCCCccchhhheec
Q 047932 520 LMSQMSSCWSMCFQPKTLICSISIM---LQKDMSPGDTMFSTA-LLMDPDCSCDLESLIHNTDLDQDELAYVITN 590 (598)
Q Consensus 520 ~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~a~~~~~~~-l~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~ 590 (598)
+|++|.+. |+.||..++..++. ..++...+..+++.. +.-.+.+...|..|+...+. -++.|+...+
T Consensus 834 lf~eM~~~---Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-~~~~A~~l~~ 904 (1060)
T PLN03218 834 VYRETISA---GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE-YDPRAFSLLE 904 (1060)
T ss_pred HHHHHHHC---CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-ChHHHHHHHH
Confidence 99999999 99999999988542 223334444444332 12355666789999887653 2344554443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-64 Score=536.11 Aligned_cols=497 Identities=21% Similarity=0.343 Sum_probs=354.4
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIME 123 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~ 123 (598)
+.+.|+++.|.++|+.+. . ++..+|+.++.+|.+.|++++|+++|++|...|+.||..||+.++.. ++..
T Consensus 131 ~~~~g~~~~A~~~f~~m~----~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMP----E-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHhCCChHHHHHHHhcCC----C-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 358899999999999883 3 68899999999999999999999999999999999999999998876 5666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
+.+++..+.+.|..||..+++.|+.+|++.|+++.|..+|++|.. +|..+|+++|.+|++.|++++|+++
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----------RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----------CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 677777777777777777777777777777777666666666642 4456666666666666666666666
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHH-------
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDL------- 276 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------- 276 (598)
|++|...|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 6666666666666666666666665555555555555555555555555555555555555555555555554
Q ss_pred ------------------------HHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047932 277 ------------------------MIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYC 332 (598)
Q Consensus 277 ------------------------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 332 (598)
|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 44444444555555555555555555555555555554554555555555555555
Q ss_pred hcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH---------------
Q 047932 333 KTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTF--------------- 397 (598)
Q Consensus 333 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------- 397 (598)
+.|++++|.++|++|.+. |..+|+.++.+|.+.|+.++|..+|++|.. ++.||..+|+.+
T Consensus 436 k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 555555555555555432 333344444444444444444444444432 234444444433
Q ss_pred --------------------HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 398 --------------------IDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 398 --------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
+.+|+++|++++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34444455555555555443 46788899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCCh
Q 047932 458 LPNVVTYNIMIHGLCNDGQMDKAHDLFLDME-AKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKT 536 (598)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~ 536 (598)
.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|+.++|.+ ++++| ++.||.
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~--~~~~m------~~~pd~ 657 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN--FINKM------PITPDP 657 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH--HHHHC------CCCCCH
Confidence 9999999999999999999999999999999 67999999999999999999999999999 99998 478999
Q ss_pred HHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCC
Q 047932 537 LICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTD 578 (598)
Q Consensus 537 ~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~ 578 (598)
.+|.. .|..+++.+.|+.+.+++++++|+++..|..|.+.+.
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 99988 6678999999999999999999999999988855443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-60 Score=509.50 Aligned_cols=516 Identities=21% Similarity=0.309 Sum_probs=431.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHHHH
Q 047932 53 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAAL 127 (598)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~~~ 127 (598)
+.++.|..++..+.+.++. ++...++.++..|.+.|+++.|.++|++|. .||..+|+.++.. ++++|+.+
T Consensus 100 ~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~ 174 (857)
T PLN03077 100 RAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCL 174 (857)
T ss_pred CCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHH
Confidence 3344444444444444433 455566677777777777777777777776 4677777777766 77788888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
|++|...|+.||..+|+.++.+|+..+++..+.+++..+.+.+ +.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 175 f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m 248 (857)
T PLN03077 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG------FELDVDVVNALITMYVKCGDVVSARLVFDRM 248 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC------CCcccchHhHHHHHHhcCCCHHHHHHHHhcC
Confidence 8888777778888888888888888888888888888887777 7888889999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHH
Q 047932 208 KDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTF 287 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (598)
.. ||..+|++++.+|++.|++++|.++|.+|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..
T Consensus 249 ~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 249 PR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred CC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 74 58899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (598)
+|+.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 999999999999999999999999973 6889999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWE 447 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 447 (598)
+.|+++.|.++++.+.+.|+.++..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999988863 456666777766666666666666
Q ss_pred HHHHHHhCCC-----------------------------------------------------------------CCCHH
Q 047932 448 LFQSLSRVGL-----------------------------------------------------------------LPNVV 462 (598)
Q Consensus 448 ~~~~~~~~~~-----------------------------------------------------------------~p~~~ 462 (598)
+|++|.. ++ .||..
T Consensus 477 lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~ 555 (857)
T PLN03077 477 FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV 555 (857)
T ss_pred HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChh
Confidence 6666653 23 34566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH-
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI- 541 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~- 541 (598)
+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.+ +|+.|.+. +++.|+..+|..
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~--~f~~M~~~--~gi~P~~~~y~~l 631 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE--YFHSMEEK--YSITPNLKHYACV 631 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH--HHHHHHHH--hCCCCchHHHHHH
Confidence 7888888999999999999999999999999999999999999999999999999 99999944 399999999988
Q ss_pred --HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCCCC-ccchhhheecccccccCC
Q 047932 542 --SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLD-QDELAYVITNSTWLLMPN 598 (598)
Q Consensus 542 --~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 598 (598)
++-..|++++|.+.++.. .+.|+ +..|..|+...... ..+.+...+++.++|.|+
T Consensus 632 v~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 455578899999998875 35665 45566665443322 224555566677777774
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=482.68 Aligned_cols=460 Identities=18% Similarity=0.304 Sum_probs=436.8
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIME 123 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~ 123 (598)
+.+.|++++|+++|+++....+..++..+|+.++.++.+.++++.+..++..|.+.|+.||..+++.++.. ++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 45789999999999999887666689999999999999999999999999999999999999999999987 9999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.+ +.|+..+|+.++.+|++.|..+.+.++
T Consensus 177 A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 177 ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG------SDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 999999997 4799999999999999999999999999999988 799999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (598)
+..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999985 468999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLF 363 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 363 (598)
||..+|+.++.+|++.|++++|.+++..|.+.|++++..+++.|+.+|++.|++++|.++|++|.+ ||..+|+.+|
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999975 6899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHcCCH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGN-SKYELDIISYSCLIDGLCKIGKL 442 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 442 (598)
.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.++.+|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999985 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHH
Q 047932 443 ETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMS 522 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (598)
++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.+ +.+..+|..++.+|.+.|++++|.+ +++
T Consensus 479 ~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~--v~~ 552 (697)
T PLN03081 479 DEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAK--VVE 552 (697)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHH--HHH
Confidence 9999999876 468999999999999999999999999999998643 3357799999999999999999999 999
Q ss_pred HHHhcccCCCCCC
Q 047932 523 QMSSCWSMCFQPK 535 (598)
Q Consensus 523 ~~~~~~~~~~~p~ 535 (598)
.|.+. |+...
T Consensus 553 ~m~~~---g~~k~ 562 (697)
T PLN03081 553 TLKRK---GLSMH 562 (697)
T ss_pred HHHHc---CCccC
Confidence 99988 77544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-58 Score=479.88 Aligned_cols=462 Identities=19% Similarity=0.282 Sum_probs=352.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHhc-----cHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 047932 73 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTL 146 (598)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (598)
.+...|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.+ +.+.+..++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456689999999999999999999999998764 56777777777766 667777777777777777777777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF 226 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (598)
+..|++.|+++.|.++|++|. .||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 777777777777777777774 3567777777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAK 306 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 306 (598)
+..|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|+.++|.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHH
Confidence 77777777777777777777777777777777777777777777777777743 47777777777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 307 ELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND 386 (598)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 386 (598)
++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777777753
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHH
Q 047932 387 VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR-VGLLPNVVTYN 465 (598)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~ 465 (598)
+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 466777777777777777777777777777777777777777777777777777777777777765 57777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCCh-HHHHH---
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKT-LICSI--- 541 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~--- 541 (598)
.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+.+.|.. +++++. ++.|+. .+|..
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~--~~~~l~-----~~~p~~~~~y~~L~~ 536 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL--AAEKLY-----GMGPEKLNNYVVLLN 536 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHh-----CCCCCCCcchHHHHH
Confidence 7777777777777777777654 457777777777777777777777777 777776 345542 23333
Q ss_pred HHHHhCCCCCChhhHHHhhhc
Q 047932 542 SIMLQKDMSPGDTMFSTALLM 562 (598)
Q Consensus 542 ~~~~~~~~~~a~~~~~~~l~~ 562 (598)
.+-..|+.++|.++++...+.
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHc
Confidence 344567777777777665544
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=309.23 Aligned_cols=517 Identities=12% Similarity=0.074 Sum_probs=273.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------cHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------RIMEA 124 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~~~~a 124 (598)
..|++++|...++.++...|. ++..+..++..+.+.|++++|..+|+++... .|+.......+.. +.++|
T Consensus 341 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLDPD--DPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHH
Confidence 344444444444444443332 4444444444444555555555555444433 2222111111110 44444
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELF 204 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 204 (598)
.+.++.+.+.+.. .......++..+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+.|
T Consensus 417 ~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 417 IADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-------PDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred HHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4544444443211 12233334444555555555555555554432 344555555666666666666666666
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP 284 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (598)
+++.+.. +.+...+..+...+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|...++++...+ +.
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 6655432 2244455555555666666666666666655542 2344455555556666666666666666655543 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFL 364 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 364 (598)
+...+..++..+...|++++|..+++.+.+.. +.+...|..++.++...|++++|...++++..... .+...+..+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 643 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLAD 643 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 44455555566666666666666666655442 33555566666666666666666666666654422 24445555566
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047932 365 GLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLET 444 (598)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 444 (598)
.+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665543 3345555666666666666666666666665443 3355555566666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHH
Q 047932 445 AWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQM 524 (598)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (598)
|...++++... .|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|.+ .++++
T Consensus 722 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~--~~~~~ 796 (899)
T TIGR02917 722 AIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIK--HYRTV 796 (899)
T ss_pred HHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHH--HHHHH
Confidence 66666666553 2333455555666666666666666666666543 4455566666666666666666666 66666
Q ss_pred HhcccCCCCCCh-HHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCCCC-ccchhhheecccccccC
Q 047932 525 SSCWSMCFQPKT-LICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLD-QDELAYVITNSTWLLMP 597 (598)
Q Consensus 525 ~~~~~~~~~p~~-~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 597 (598)
.+. .|+. ..+.. ++...|+ .+|+..+++++++.|+++..+..+....... .-+.|..+.++++++.|
T Consensus 797 ~~~-----~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 797 VKK-----APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHh-----CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 644 2332 22222 2333444 5566666666666666666555553332221 22445555666655555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=309.00 Aligned_cols=522 Identities=13% Similarity=0.085 Sum_probs=404.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIME 123 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~ 123 (598)
+.+.|++++|...|+.++...|. +...+..++..+.+.|++++|...++++.... ..+...+..+... ++++
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPN--SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34566667777777666666554 55666666666777777777777777666543 1122222222211 6777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+.+.+.. +........++..+.+.|++++|.++
T Consensus 382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-------PELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-------CcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 777777776653 2245566667777777777777777777776654 23345556667777788888888888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (598)
++.+... .+.+..++..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.++.+.+.+ +
T Consensus 454 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 530 (899)
T TIGR02917 454 AKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-P 530 (899)
T ss_pred HHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 8887764 34467788888888888999999999998888753 3355667778888888999999999998888764 3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLF 363 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 363 (598)
.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+...|++++|..+++.+.... +.+...|..++
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 608 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG 608 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 467788888888888999999999999887764 4566778888899999999999999999988653 34678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (598)
.++...|++++|...|+.+.+.. +.+...+..++.++...|++++|..+|+++.+.. +.+..++..++..+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998764 5567788889999999999999999999998764 446788899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHH
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQ 523 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (598)
+|..+++.+.+.+ +.+...+..++..+...|++++|.+.|+++...+ |+..++..++.++.+.|++++|.+ .+++
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~--~~~~ 761 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVK--TLEA 761 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHH--HHHH
Confidence 9999999998864 4467778888899999999999999999999864 555788889999999999999999 9999
Q ss_pred HHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCCCCccchhhheecccccccCC
Q 047932 524 MSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLDQDELAYVITNSTWLLMPN 598 (598)
Q Consensus 524 ~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (598)
+.+. .|+...... ++...|+.++|...++++++..|+++.++..+.+......+..|..++++++.+.|+
T Consensus 762 ~l~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 762 WLKT-----HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPN 835 (899)
T ss_pred HHHh-----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Confidence 9866 455433322 556689999999999999999999999999987776655556699999999998885
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-25 Score=241.93 Aligned_cols=498 Identities=14% Similarity=0.071 Sum_probs=328.4
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSF----------------NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 111 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 111 (598)
..++.|++++|.+.++++.+..|. ++..+ ..++..+.+.|++++|+..|+++.+.. .|+..
T Consensus 71 ~~l~~g~~~~A~~~l~~l~~~~P~--~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~ 147 (1157)
T PRK11447 71 LLLRQGDSDGAQKLLDRLSQLAPD--SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELD 147 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChH
Confidence 346899999999999999999987 44432 344557889999999999999998763 23322
Q ss_pred h---H-HHHHh--ccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------------
Q 047932 112 T---H-SILIN--CRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF------------ 173 (598)
Q Consensus 112 ~---~-~~ll~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------ 173 (598)
. + ..+.. .+.++|++.++++.+.. +.+...+..+...+...|+.++|+..++++.......
T Consensus 148 la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~ 226 (1157)
T PRK11447 148 LAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIK 226 (1157)
T ss_pred HHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 1 1 22221 28999999999999875 3366778899999999999999999999986542100
Q ss_pred cccc--------------CCCHhH---------------------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 174 GVVC--------------KPDTVT---------------------YNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 174 ~~~~--------------~~~~~~---------------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
.... .|+... .......+...|++++|+..|++..+... .+...
T Consensus 227 ~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a 305 (1157)
T PRK11447 227 DMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEA 305 (1157)
T ss_pred ccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 0000 011000 01224456778999999999999988643 37888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhH------------HHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTF------------SVIVDELCKNGKMEEASRLLDLMIQIGVHPN 285 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 285 (598)
+..+..++.+.|++++|+..|++.++...... ...+ ......+.+.|++++|+..++++++.. +.+
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTD 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 99999999999999999999999887632211 1111 122456778999999999999999874 336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC--------CCHH
Q 047932 286 TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR--------PTVV 357 (598)
Q Consensus 286 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~ 357 (598)
...+..+..++...|++++|++.|+++.+.. +.+...+..+...|. .++.++|...++.+...... ....
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 6677888899999999999999999988764 334445554544442 23444444444433221000 0011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH-------
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYS------- 430 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------- 430 (598)
.+..+...+...|++++|+..|+++++.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 12223334444555555555555554432 2234444444455555555555555555544322 11222222
Q ss_pred -------------------------------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047932 431 -------------------------------------CLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473 (598)
Q Consensus 431 -------------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (598)
.+...+...|++++|..+++. .+.+...+..+...+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence 233445556666666666551 23345566778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCC
Q 047932 474 DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDM 549 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~ 549 (598)
.|++++|+..|+++++.. +.+...+..++.+|...|++++|.+ .++.+.+. .|+...... +....|+.
T Consensus 616 ~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~--~l~~ll~~-----~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA--QLAKLPAT-----ANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHhcc-----CCCChHHHHHHHHHHHhCCCH
Confidence 999999999999988864 5577888888899999999999999 99988744 455443222 45567889
Q ss_pred CCChhhHHHhhhcCccccc
Q 047932 550 SPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 550 ~~a~~~~~~~l~~~P~~~~ 568 (598)
++|.+.++++++..|+++.
T Consensus 688 ~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 688 AAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHHHHHHhhhCccCCc
Confidence 9999999999988877654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-25 Score=243.33 Aligned_cols=523 Identities=13% Similarity=0.031 Sum_probs=360.0
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH---------------
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS--------------- 114 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--------------- 114 (598)
...++.+.|.+.+++++...|. ++..+..++..+.+.|+.++|.+.++++.+.. |+...+.
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~--~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~ 114 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPN--NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQ 114 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhh
Confidence 4678999999999999999987 89999999999999999999999999999874 5543321
Q ss_pred ------HHHh-ccHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHH
Q 047932 115 ------ILIN-CRIMEAAALFTKLRVFGCEPDVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNT 186 (598)
Q Consensus 115 ------~ll~-~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (598)
.+.. .++++|+..|+++.+.+. ++.. ....+.......|+.++|++.++++.+.. |.+...+..
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-------P~~~~~~~~ 186 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-------PGNTGLRNT 186 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 1111 199999999999987642 2322 11122222334699999999999999986 567888899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC------------------CCC-HHHHH---------------------------
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENI------------------NPN-VVTYN--------------------------- 220 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~-~~~~~--------------------------- 220 (598)
+...+...|++++|++.++++..... .+. ...+.
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998864311 000 00000
Q ss_pred -------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-CHHHH---
Q 047932 221 -------SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP-NTFVY--- 289 (598)
Q Consensus 221 -------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~--- 289 (598)
.....+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++.++..... ....+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 11344566788888888888888753 3366777888888888888888888888887754221 11111
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHH
Q 047932 290 ---------NTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYS 360 (598)
Q Consensus 290 ---------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 360 (598)
......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++...... +...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 122345677888888888888888764 445667777888888888888888888888876332 455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCC--------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 361 TLFLGLFEVHQVEHALKLFDEMQHNDVA--------ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCL 432 (598)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 432 (598)
.+...+. .++.++|..+++.+...... .....+..+...+...|++++|+..|+++++.. +.+...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 6666554 45678888777655332100 012234556777888999999999999999775 3467788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------
Q 047932 433 IDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK---------------------- 490 (598)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------- 490 (598)
...|...|++++|...++++.+... .+...+..+...+...|+.++|+..++.+...
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999987422 23333333333334444544444444332110
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCC
Q 047932 491 -----------------GVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDM 549 (598)
Q Consensus 491 -----------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~ 549 (598)
..+.+...+..+...+.+.|++++|+. .++++.+. .|+...... ++...|+.
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~--~y~~al~~-----~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA--AYQRVLTR-----EPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH--HHHHHHHh-----CCCCHHHHHHHHHHHHHCCCH
Confidence 124455666777788888888888888 88888855 455432222 45567888
Q ss_pred CCChhhHHHhhhcCccccchhhHhhhhCCC-CccchhhheecccccccC
Q 047932 550 SPGDTMFSTALLMDPDCSCDLESLIHNTDL-DQDELAYVITNSTWLLMP 597 (598)
Q Consensus 550 ~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 597 (598)
++|++.++.+++..|+++..+..+.+.... ...+.|....+++..+.|
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 888888888888888888776655443321 122445555555555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-24 Score=224.18 Aligned_cols=513 Identities=12% Similarity=0.026 Sum_probs=284.1
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc--cHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC--RIMEAAA 126 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~--~~~~a~~ 126 (598)
....|++++|+..|+.+++.+|. ++.++..++.+|.+.|++++|+..+++..+. .|+...+..++.. +.++|..
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~--n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i~~~~kA~~ 129 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPD--NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAIPVEVKSVT 129 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHhccChhHHH
Confidence 44669999999999999999998 7899999999999999999999999999987 5665555554443 7778888
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHH--------HHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHH-HHHHHHhcCCH
Q 047932 127 LFTKLRVFGCEPDVFTYNTLING--------LCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNT-IIDGVCKEGFV 197 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~ 197 (598)
+++++....+. +..++..+... |.+.+ +|.+.++ ..... ..|+..+... +...|.+.|++
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~------~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFA------ASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhC------CCCCcHHHHHHHHHHHHHHhCH
Confidence 88888776422 33444444443 44443 3333333 11111 1222333333 36666667777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047932 198 DKAMELFLQMKDENINPNVVTYNSLIHCFSH-ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDL 276 (598)
Q Consensus 198 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 276 (598)
++|++++.++.+.+.. +......|..+|.. .++ +.+..+++.. +..+...+..++..|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 7777776666665322 33334444445544 244 4444443321 123444455555555555555555555444
Q ss_pred HHhcCC--------------------------------------------------------------------------
Q 047932 277 MIQIGV-------------------------------------------------------------------------- 282 (598)
Q Consensus 277 ~~~~~~-------------------------------------------------------------------------- 282 (598)
+.....
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 322100
Q ss_pred --------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCChhhHHHHHHHHHhcCC---H
Q 047932 283 --------------------HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN-G-CMHDVVSYTTLINGYCKTKN---V 337 (598)
Q Consensus 283 --------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~ 337 (598)
+-+......+.-...+.|+.++|.++|+..... + ...+......++..|.+.+. .
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 001111111112223445555555555554431 0 01122233345555555444 2
Q ss_pred HHHHHH-------------------------HHHHccCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 047932 338 EEALNL-------------------------YRKMLPKGIRP--TVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAAD 390 (598)
Q Consensus 338 ~~A~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 390 (598)
.++..+ +...... .++ +...+..+..++.. ++.++|...+.+.... .|+
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 222222 1111111 122 45555666655554 6666677766666554 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 470 (598)
......+..++...|++++|...|+++... +|+...+..+..++...|++++|...+++..+.+ +.+...+..+...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 333333444445677777777777766543 3333445555666666777777777777666642 1122222233333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHh
Q 047932 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQ 546 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~ 546 (598)
+.+.|++++|...+++.++. .|+...+..+..++.+.|++++|+. .++++.+. .|+...... .+...
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~--~l~~AL~l-----~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVS--DLRAALEL-----EPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHh-----CCCCHHHHHHHHHHHHHC
Confidence 44457777777777777654 3456666666667777777777777 77776643 555544333 34445
Q ss_pred CCCCCChhhHHHhhhcCccccchhhHhhhhCCCCcc-chhhheecccccccCC
Q 047932 547 KDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLDQD-ELAYVITNSTWLLMPN 598 (598)
Q Consensus 547 ~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 598 (598)
|+.++|+..++++++++|+++.++.++.+......+ +.|...+++|.++.|+
T Consensus 657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 666777777777777777777766666555554333 4566666666666664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-24 Score=200.63 Aligned_cols=425 Identities=14% Similarity=0.109 Sum_probs=268.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 047932 78 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLC 151 (598)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (598)
...+..-..+.|++++|.+--...-..+ |...--..++.. +++....--....+.. +.-..+|..+...+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 4456666667888888887766554432 221111112222 3333222222222221 224556777777777
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcC
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT-YNSLIHCFSHAD 230 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~ 230 (598)
..|++++|+..++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+... ...+.......|
T Consensus 128 erg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhc
Confidence 7777777777777777754 334667777777777777777777777777664 344332 233444445567
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
++++|...|.+.++.. +--...|+.|.-.+-.+|+...|++.|++.++.+. .-...|..|...|...+.+++|...|.
T Consensus 199 rl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred ccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 7777777777766642 11234667777777777777777777777776531 134566677777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 047932 311 SMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT-VVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA 389 (598)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 389 (598)
+..... +.....+..+...|..+|..+-|+..|++.++. .|+ ...|+.+..++-..|++.+|.+.|.+.+... +.
T Consensus 277 rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ 352 (966)
T KOG4626|consen 277 RALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN 352 (966)
T ss_pred HHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc
Confidence 766553 334556666666677777777777777777665 333 4567777777777777777777777776653 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMI 468 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 468 (598)
.....+.|...+...|.+++|..+|....... +--....+.|...|-.+|++++|+..|++.++ +.|+ ...|+.+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 46666777777777777777777777766542 22344566777777777777777777777766 4565 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 469 HGLCNDGQMDKAHDLFLDMEAKGVEPD-CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
..|-..|+.+.|++.+.+++.. .|. .+.++.|...|...|+..+|+. -++..++.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~--sY~~aLkl 485 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQ--SYRTALKL 485 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHH--HHHHHHcc
Confidence 7777777777777777777653 343 4566677777777777777777 77777633
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-24 Score=198.90 Aligned_cols=440 Identities=13% Similarity=0.070 Sum_probs=352.8
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH---Hhc--cHHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL---INC--RIMEA 124 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l---l~~--~~~~a 124 (598)
.+.|++.+|.+.-...-..+|. +......+-.++.+..+++....--...++... --..+|..+ +.. +.++|
T Consensus 59 yq~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 59 YQGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HhccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHhchHHHH
Confidence 4789999999998888777776 555555566666666666655444443443321 112233322 222 88999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhH-HHHHHHHHHhcCCHHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVT-YNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~ 203 (598)
+.+++.+++... ..+..|..+..++...|+.+.|.+.|...++.+ |+... ...+...+-..|+..+|...
T Consensus 136 l~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln--------P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 136 LALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--------PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--------cchhhhhcchhHHHHhhcccchhHHH
Confidence 999999988742 257789999999999999999999999999865 55443 34455666678999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
|.+..+.... =...|..|...+...|+.-.|+..|++..+. .|+ ...|..|...|...+.+++|...+.+.....
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 9998875321 3568999999999999999999999999875 444 4588899999999999999999999988763
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 283 HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
+....++..+...|...|++|.|+..|++.++.. |.-...|+.|..++-..|+..+|.+.|.+....... .....+.+
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 2356678888899999999999999999999875 446788999999999999999999999999886432 46778899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCC
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD-IISYSCLIDGLCKIGK 441 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 441 (598)
...+...|.++.|..+|....+.. +.-...++.|...|.++|++++|+..|++++.. .|+ ...|+.+...|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhh
Confidence 999999999999999999998863 334678899999999999999999999999875 444 6689999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccc
Q 047932 442 LETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD-CVIFNTIMLGFIRNNETSK 514 (598)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 514 (598)
.+.|++.+.+.+. +.|. ...++.|...|-..|++.+|+.-|++.++. +|| +..+-.++.++---.++.+
T Consensus 438 v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccc
Confidence 9999999999988 4565 567899999999999999999999999975 565 4667667666544444444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-21 Score=188.60 Aligned_cols=534 Identities=14% Similarity=0.094 Sum_probs=358.2
Q ss_pred HHHHHHhhhhhhcchhHHHHHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047932 18 AKLKESLRLTVKDGASIEKFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSL 97 (598)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 97 (598)
........++..+.+++..++-+....| +.|+|..|+.+|..++...|. ..+.....+...+.+.|+.+.|+..
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~y-----nkkdY~~al~yyk~al~inp~-~~aD~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAY-----NKKDYRGALKYYKKALRINPA-CKADVRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHh-----ccccHHHHHHHHHHHHhcCcc-cCCCccchhhhHHHhccchhhHHHH
Confidence 3445566666677777777777777655 589999999999999998887 3344445556777899999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHhc---------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 98 FKRLNSTGLFPDLYTHSILINC---------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 168 (598)
Q Consensus 98 ~~~~~~~~~~p~~~~~~~ll~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (598)
|.++++. .|........|.. .+..+...+...-..+ .-++.+.+.|...|.-.|+++.++.+...+..
T Consensus 222 ~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 222 FERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 9999976 4543333222222 5667777777665544 33677788899999999999999999988876
Q ss_pred cCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 169 GNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH 248 (598)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (598)
.... -..-...|..+..+|...|++++|...|.+..+.....-+-.+.-|...|.+.|+++.+...|+.+.+. .+
T Consensus 299 ~t~~----~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p 373 (1018)
T KOG2002|consen 299 NTEN----KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LP 373 (1018)
T ss_pred hhhh----hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-Cc
Confidence 5410 012245678889999999999999999988887633222344556788899999999999999999886 34
Q ss_pred CCHhhHHHHHHHHHhCC----CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC
Q 047932 249 PNVVTFSVIVDELCKNG----KMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSME----SNGCMHD 320 (598)
Q Consensus 249 ~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~ 320 (598)
.+..+...+...|...+ ..+.|..++......- +.|...|..+..++....-+ .++..|..+. ..+.++.
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip 451 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIP 451 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCC
Confidence 45667777777777664 4566666666666553 44666676666666543333 3355554432 3344466
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHccC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----
Q 047932 321 VVSYTTLINGYCKTKNVEEALNLYRKMLPK---GIRPTV------VTYSTLFLGLFEVHQVEHALKLFDEMQHND----- 386 (598)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 386 (598)
+...|.+...+...|++.+|...|...... ...++. .+--.+..+.-..++.+.|.+.|..+.+..
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId 531 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYID 531 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHH
Confidence 677777777777778888777777766543 111111 122233334444455555555555554432
Q ss_pred ----------------------------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHH
Q 047932 387 ----------------------------VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS-KYELDIISYSCLIDGLC 437 (598)
Q Consensus 387 ----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 437 (598)
...++..+..+...+.+...+..|..-|..+.+. ...+|..+...|...|.
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 0223333333444444444444444433333321 11245566666666554
Q ss_pred Hc------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047932 438 KI------------GKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG 505 (598)
Q Consensus 438 ~~------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 505 (598)
.. +..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+.. .....+|..+.++
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHC 689 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHH
Confidence 32 45788899999888864 3367777888888999999999999999998864 3466789999999
Q ss_pred HHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 506 FIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
|..+|++..|++ .|+...+++ .-.-+...... .....|++.+|.....+++.+.|+|+...-++
T Consensus 690 ~~e~~qy~~AIq--mYe~~lkkf--~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQ--MYENCLKKF--YKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHHHHHH--HHHHHHHHh--cccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 999999999999 999998883 32223333333 44556889999999999999999999865544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-19 Score=190.95 Aligned_cols=517 Identities=11% Similarity=0.016 Sum_probs=348.2
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHhHHHHH-------
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSILI------- 117 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll------- 117 (598)
+..+++.|++++|+..++++.+.+|. +...+..+... +++.+|...|+++...... ++...+...+
T Consensus 85 A~~yl~~g~~~~A~~~~~kAv~ldP~--n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 85 AEAYRHFGHDDRARLLLEDQLKRHPG--DARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchh
Confidence 44456899999999999999999886 77777666433 8899999999999987432 2222233332
Q ss_pred -hccHHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh-c
Q 047932 118 -NCRIMEAAALFTKLRVFGCEPDVFTYNTL-INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK-E 194 (598)
Q Consensus 118 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~ 194 (598)
-.+.++|...++ .......|+..+.... ...|.+.|++++|++++.++.+.+ +.+......|...|.. .
T Consensus 159 ~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-------pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 159 RLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-------TLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred hhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhh
Confidence 115677777776 4444333445544444 888999999999999999888876 2333334444444444 2
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------------
Q 047932 195 GFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG---------------------------- 246 (598)
Q Consensus 195 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 246 (598)
++ +.+..+++. .++.+...+..++..|...|+.++|.++++++....
T Consensus 231 ~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~ 305 (987)
T PRK09782 231 LD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYT 305 (987)
T ss_pred CH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchh
Confidence 33 444444322 112244444444555555555555444444432110
Q ss_pred --------------------------------C----------------------------------CCCHhhHHHHHHH
Q 047932 247 --------------------------------V----------------------------------HPNVVTFSVIVDE 260 (598)
Q Consensus 247 --------------------------------~----------------------------------~~~~~~~~~l~~~ 260 (598)
+ +-+......+.-.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~ 385 (987)
T PRK09782 306 VQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ 385 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 0 0011112222223
Q ss_pred HHhCCCHHHHHHHHHHHHhc-C-CCcCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHH
Q 047932 261 LCKNGKMEEASRLLDLMIQI-G-VHPNTFVYNTLMDGFCLTGR---VNHAKEL----------------------FVSME 313 (598)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~---~~~a~~~----------------------~~~~~ 313 (598)
..+.|+.++|.++++..... + -..+.....-++..|.+.+. ..++..+ +....
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 44567778888888877662 1 22244555577777777665 3333322 11111
Q ss_pred HC-C-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 047932 314 SN-G-CMH--DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA 389 (598)
Q Consensus 314 ~~-~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 389 (598)
.. + .++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...|+++... +|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 11 1 134 67778888888876 8899999988887765 356554444555667899999999999998664 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+...+..+..++.+.|++++|..+++++.+.. +.+...+..+...+...|++++|...+++..+. .|+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 44556677888999999999999999998764 334444444455555679999999999999985 567888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHH
Q 047932 470 GLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIML 545 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~ 545 (598)
++.+.|++++|+..+++.+... |.+...+..+..++...|++++|+. .++++.+. .|+...... ++..
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~--~l~~AL~l-----~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE--MLERAHKG-----LPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHh-----CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875 6677888899999999999999999 99999965 576543333 6677
Q ss_pred hCCCCCChhhHHHhhhcCccccchhhHhhhhCCCCcc-chhhheecccccccC
Q 047932 546 QKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLDQD-ELAYVITNSTWLLMP 597 (598)
Q Consensus 546 ~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 597 (598)
.|++++|+..++++++++|+++.+.+...+....+.. +.+.+-.+++|.+.|
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8999999999999999999999988766554443221 445555666666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-20 Score=190.64 Aligned_cols=257 Identities=13% Similarity=0.051 Sum_probs=200.4
Q ss_pred CCCHHHHHHHHHHHHhcC-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047932 264 NGKMEEASRLLDLMIQIG-VHP-NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEAL 341 (598)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 341 (598)
.+.+++|.+.|+..+..+ ..| ....+..+..++...|++++|...++...... +.....|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467889999999988764 222 44567777888888999999999999988764 335667888888888999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 047932 342 NLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK 421 (598)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 421 (598)
..|+++...... +...+..+...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++..+..
T Consensus 386 ~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999988876432 57788888888999999999999999988864 4567777888888999999999999999888653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047932 422 YELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV------TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 495 (598)
+.+...++.+...+...|++++|+..|++..+.....+.. .++..+..+...|++++|.+++++.+... +.+
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~ 541 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PEC 541 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCc
Confidence 4467888889999999999999999999988743211111 11122223334689999999999988764 445
Q ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 496 CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
...+..++.++.+.|++++|.+ +++++.+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~--~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALK--LFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHH--HHHHHHHH
Confidence 5678888999999999999999 99998755
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-19 Score=188.74 Aligned_cols=402 Identities=15% Similarity=0.040 Sum_probs=294.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
.+...+..+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|++.++...+... .+...|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 4566788899999999999999999884 46788899999999999999999999999998643 36778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------------------
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG-------------------- 281 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------- 281 (598)
+..+|...|++++|+..|..+...+...+.. ...++..+.. ..+........+..
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCC
Confidence 9999999999999999887765542111111 1111111111 01111111111110
Q ss_pred -----------CCcCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047932 282 -----------VHPNT-FVYNTLMDG---FCLTGRVNHAKELFVSMESNG--CMHDVVSYTTLINGYCKTKNVEEALNLY 344 (598)
Q Consensus 282 -----------~~~~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 344 (598)
..+.. ..+..+... ....+++++|.+.|+.....+ .+.....+..+...+...|++++|+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00000 000111111 122367899999999988764 2335567888888899999999999999
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 047932 345 RKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL 424 (598)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 424 (598)
++.....+. ....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|++.++.. +.
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 999876432 46678888888999999999999999998864 5568888899999999999999999999998775 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH------
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD-CV------ 497 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~------ 497 (598)
+...+..+..++.+.|++++|+..+++..+.. +.+...++.+...+...|++++|++.|++.+... |+ ..
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~ 508 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVL 508 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHH
Confidence 67788889999999999999999999988752 3357788889999999999999999999998753 22 11
Q ss_pred -HHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccchh
Q 047932 498 -IFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCDL 570 (598)
Q Consensus 498 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~ 570 (598)
.+......+...|++++|.+ +++++.+. .|+...... ++...|+.++|+..+++++++.+.....+
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~--~~~kAl~l-----~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~ 579 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAEN--LCEKALII-----DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV 579 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHH--HHHHHHhc-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH
Confidence 11222223444799999999 99998854 566643222 56778999999999999999988755543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=186.21 Aligned_cols=307 Identities=14% Similarity=0.100 Sum_probs=178.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN---VVTYNSLI 223 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 223 (598)
+..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344556666666666666666654 34455666666666666666666666666655321111 13445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 047932 224 HCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVN 303 (598)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 303 (598)
..|...|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------- 178 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------- 178 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------
Confidence 55666666666666666655431 23344555555555555555555555555554332111000
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 304 HAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
....+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..+++++.
T Consensus 179 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 179 ----------------IAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred ----------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011233344455555555555555555554321 133445555566666666666666666665
Q ss_pred hCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047932 384 HNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVT 463 (598)
Q Consensus 384 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 463 (598)
..+......++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+
T Consensus 242 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~ 317 (389)
T PRK11788 242 EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRG 317 (389)
T ss_pred HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHH
Confidence 5432222345566677777777777777777777655 345455577777777788888888888777664 567777
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 047932 464 YNIMIHGLCN---DGQMDKAHDLFLDMEAKGVEPDCV 497 (598)
Q Consensus 464 ~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 497 (598)
++.++..+.. .|+.++++.++++|.++++.|++.
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7776666553 457777888888777766666655
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=186.07 Aligned_cols=303 Identities=15% Similarity=0.140 Sum_probs=230.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC---HHHHHHHHHHHHhc
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN---TFVYNTLMDGFCLT 299 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 299 (598)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556677777777777776653 23445666677777777777777777777766432111 23566677777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 047932 300 GRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV----VTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 300 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 375 (598)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+...+..+.. ..+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888877653 446677788888888888888888888888765433221 2345677788899999999
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047932 376 LKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV 455 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (598)
...|+++.+.. +.+...+..++..+.+.|++++|..+|+++...+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 44567788888999999999999999999987643323467888999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCccccchhHHHHHHHhcccCCC
Q 047932 456 GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR---NNETSKSSRGKLMSQMSSCWSMCF 532 (598)
Q Consensus 456 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 532 (598)
.|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++.. +++++.++ ++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~--~~~~~~~~---~~ 349 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLL--LLRDLVGE---QL 349 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHH--HHHHHHHH---HH
Confidence 466666788899999999999999999999875 5888888888877664 568899999 99999987 66
Q ss_pred CCChH
Q 047932 533 QPKTL 537 (598)
Q Consensus 533 ~p~~~ 537 (598)
.|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 77765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-19 Score=190.44 Aligned_cols=404 Identities=7% Similarity=0.017 Sum_probs=223.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
..-.+.+....|+.++|++++..+.... +.+...+..+...+.+.|++++|.++|++..... +.+...+..+
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444555556666666666666665422 3344456666666666666666666666665542 2244555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRV 302 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 302 (598)
+.++...|++++|+..++++.+. .+.+.. +..+..++...|+.++|+..++++.+... .+...+..+..++...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 66666666666666666666654 223344 55566666666666666666666666532 2344444555555566666
Q ss_pred HHHHHHHHHHHHCCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHccC-CCCCCHH-HHH----HH
Q 047932 303 NHAKELFVSMESNGCMHDV------VSYTTLINGYC-----KTKNV---EEALNLYRKMLPK-GIRPTVV-TYS----TL 362 (598)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~~----~l 362 (598)
+.|.+.++.+... |+. .....++.... ..+++ ++|++.++.+... ...|+.. .+. ..
T Consensus 167 e~Al~~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 6666666544431 110 01111122111 11223 5566666666532 1112111 111 11
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVA-ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL---DIISYSCLIDGLCK 438 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 438 (598)
+..+...+++++|+..|+.+.+.+.+ |+. ....+..++...|++++|+.+|+++....... .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 22334556777777777776665421 221 12224556677777777777777765432111 12344555556667
Q ss_pred cCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 439 IGKLETAWELFQSLSRVGL-----------LPN---VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
.|++++|...++.+.+... .|+ ...+..+...+...|+.++|+++++++.... |.+...+..++.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 7777777777777665311 112 1233445556667777777777777776653 555666677777
Q ss_pred HHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccch
Q 047932 505 GFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCD 569 (598)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~ 569 (598)
.+...|++++|++ .++++++. .|+...... .....+++++|+..++++++.+|+++.+
T Consensus 402 l~~~~g~~~~A~~--~l~~al~l-----~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAEN--ELKKAEVL-----EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHH--HHHHHHhh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7777777777777 77777643 566544333 3444667777777777777777777764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-19 Score=181.70 Aligned_cols=400 Identities=12% Similarity=0.023 Sum_probs=305.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
-...++..+.+.|++++|..+++...... +.+...+..++.++...|++++|...++++..... .+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~ 115 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLL 115 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHH
Confidence 34556778889999999999999999875 55677777888888899999999999999998643 36778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCC
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGR 301 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 301 (598)
+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|+
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCC
Confidence 9999999999999999999999863 445678888999999999999999999988776432 33334333 34788999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHH----HHH
Q 047932 302 VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEH----ALK 377 (598)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~ 377 (598)
+++|...++.+......++...+..+...+...|++++|+..++++...... +...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 9999999999887643344455556677889999999999999999887543 67778889999999999985 899
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 378 LFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
.|+++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|+..++++.+.
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-- 347 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE-- 347 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 999999874 5578889999999999999999999999999765 446777888999999999999999999999885
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC-HHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCC
Q 047932 458 LPNV-VTYNIMIHGLCNDGQMDKAHDLFLDMEAKG---VEPD-CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCF 532 (598)
Q Consensus 458 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 532 (598)
.|+. ..+..+..++...|++++|+..|+++.+.. .+++ ......+-.++...+..++... +..++.-. .-
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~--W~~~~~~~---~~ 422 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLD--WAWEVAGR---QS 422 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhh--HHHHHhcc---cc
Confidence 4554 334445678889999999999999998752 1111 1233344445555666655545 56665421 12
Q ss_pred CCChHHHHH------------HHHHhCCCCCChhhHHHhhhc
Q 047932 533 QPKTLICSI------------SIMLQKDMSPGDTMFSTALLM 562 (598)
Q Consensus 533 ~p~~~~~~~------------~~~~~~~~~~a~~~~~~~l~~ 562 (598)
.-|...|+- +=+....-+.|.+...+.+++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (656)
T PRK15174 423 GIERDEWERRAKWGYLADNFLLDWLECRGEQADEPMYRLADI 464 (656)
T ss_pred cCChHHHHHHHHhhHHHHHHHHHHHHhcccchhhHHHHHhhh
Confidence 334444433 124455556666655555554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-19 Score=185.11 Aligned_cols=326 Identities=14% Similarity=0.047 Sum_probs=225.3
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+.+.|++++|+.+++..+...|. ++.++..++.+....|++++|...|++++.. .|+
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~------------------- 108 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVC------------------- 108 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCC-------------------
Confidence 45788999999999998888887 6677777777778889999988888888865 332
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
+...+..+...+.+.|++++|+..++++.... +.+...+..++..+...|++++|...++.+.
T Consensus 109 ----------~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 109 ----------QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred ----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 44456667777777788888888887777754 4456677777777777788888877777766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
..... +...+..+ ..+...|++++|...++.+++....++...+..+...+...|++++|+..++.+.+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 54322 33333333 3366777788887777777665333333344445566777788888888777777654 335666
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 047932 289 YNTLMDGFCLTGRVNH----AKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFL 364 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 364 (598)
+..+...+...|++++ |...|+.+.... |.+...+..+...+...|++++|...+++.....+. +...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 6677777777777764 677777777653 446667777777777778888888887777765432 4555666677
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 047932 365 GLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS 420 (598)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 420 (598)
.+...|++++|...|+.+...+ +.+...+..+..++...|+.++|...|+++.+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777788888888877777653 222333444556677778888888888777654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-18 Score=181.55 Aligned_cols=414 Identities=12% Similarity=0.023 Sum_probs=272.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT 153 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (598)
++.-..-.+.+....|+.++|+++|.++.... +.....+..+...+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-------------------------------~~~a~~~~~lA~~~~~~ 62 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-------------------------------QLPARGYAAVAVAYRNL 62 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------------------CCCHHHHHHHHHHHHHc
Confidence 44455555556666777777777777666321 23444567777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047932 154 GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWN 233 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (598)
|++++|..+|++..+.. |.+...+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.+
T Consensus 63 g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~ 133 (765)
T PRK10049 63 KQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHW 133 (765)
T ss_pred CCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHH
Confidence 77777777777777654 4456666677777777777777777777777652 22445 666777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCH------HHHHHHHHHHH-----hcCCH
Q 047932 234 EAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNT------FVYNTLMDGFC-----LTGRV 302 (598)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~ 302 (598)
+|+..++++.+.. +.+...+..+..++...|..++|++.++.+.. .|+. .....++.... ..+++
T Consensus 134 ~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 134 DELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 7777777777653 22444555566666677777777777765543 1111 01112222221 11223
Q ss_pred ---HHHHHHHHHHHHC-CCCCChh-hHH----HHHHHHHhcCCHHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHhcCCH
Q 047932 303 ---NHAKELFVSMESN-GCMHDVV-SYT----TLINGYCKTKNVEEALNLYRKMLPKGIR-PTVVTYSTLFLGLFEVHQV 372 (598)
Q Consensus 303 ---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 372 (598)
++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+...+.. |+. ....+...+...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 6677777777753 1112111 111 1123445668888888888888876532 322 222346678888888
Q ss_pred HHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-----------CCC---HHHHHHHHHH
Q 047932 373 EHALKLFDEMQHNDVAA---DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY-----------ELD---IISYSCLIDG 435 (598)
Q Consensus 373 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~ 435 (598)
++|+.+|+++....... .......+..++...|++++|..+++.+..... .|+ ...+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 88888888877643111 134455566677888888888888888875421 122 2345667788
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc
Q 047932 436 LCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKS 515 (598)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 515 (598)
+...|++++|+++++++.... +.+...+..++..+...|++++|++.+++++... |.+...+...+..+...|++++|
T Consensus 369 l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 889999999999999988752 3357778888888999999999999999998864 44567777778888999999999
Q ss_pred chhHHHHHHHhcccCCCCCChHHHHH
Q 047932 516 SRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
.. +++++++. .|+......
T Consensus 447 ~~--~~~~ll~~-----~Pd~~~~~~ 465 (765)
T PRK10049 447 DV--LTDDVVAR-----EPQDPGVQR 465 (765)
T ss_pred HH--HHHHHHHh-----CCCCHHHHH
Confidence 99 99999865 677665555
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-18 Score=176.44 Aligned_cols=200 Identities=12% Similarity=0.153 Sum_probs=124.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK-----YELDIISYSCLIDGLC 437 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 437 (598)
+-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|+.+|+.+.... ..++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34455666777777777777766544445566666777777777777777777665432 1223333456666777
Q ss_pred HcCCHHHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 438 KIGKLETAWELFQSLSRVGL-------------LPNVV-TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
..+++++|..+++++.+... .||.. .+..++..+...|+..+|.+.++++.... |-|......+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 77777777777777665211 12211 22334555667777777777777776654 55667777777
Q ss_pred HHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccchh
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCDL 570 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~ 570 (598)
..+...|++.+|.+ .++.+. .+.|+...... ..+..++..+|....+.+++..|+++...
T Consensus 458 ~v~~~Rg~p~~A~~--~~k~a~-----~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 458 SIYLARDLPRKAEQ--ELKAVE-----SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhcCCHHHHHH--HHHHHh-----hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 77777777777777 776665 34666544444 34445777777777777777777777543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-18 Score=169.59 Aligned_cols=393 Identities=12% Similarity=0.075 Sum_probs=243.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC----
Q 047932 120 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG---- 195 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 195 (598)
+++.|...|.+..+.+..--+..+--|+..|.+.|+++.+...|+...... |.+..+...|...|...+
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-------p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-------PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-------cchHHHHHHHHhHHHhhhhhhH
Confidence 444444444444433211111122234444555555555555555544443 333444444444444433
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHhCCCHHHHH
Q 047932 196 FVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMM----DQGVHPNVVTFSVIVDELCKNGKMEEAS 271 (598)
Q Consensus 196 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 271 (598)
..+.|..++....+.- +.|...|..+...+....-+.. +..|.... ..+..+.+...|.+...+...|++.+|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 2344444444444331 2244445444444433332222 44444332 2233445556666666666667777776
Q ss_pred HHHHHHHhc---CCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047932 272 RLLDLMIQI---GVHPN------TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALN 342 (598)
Q Consensus 272 ~~~~~~~~~---~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 342 (598)
..|...... ...+| ..+-..+..+.-..++.+.|.+.|..+.+.. |.-+..|..++......++..+|..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHH
Confidence 666666544 11111 2223334455555666677777777666652 2223334444433334567778888
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHHHH------------cCCHHH
Q 047932 343 LYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN-DVAADTYIYNTFIDGLCK------------NGFVLE 409 (598)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~ 409 (598)
.++.....+- .++..++.+...+.....+..|.+-|..+.+. ...+|+++..+|.+.|.+ .+..++
T Consensus 552 ~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 552 LLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 8887766532 25566666777888888888888866666543 223677888888886653 346788
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 410 ALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 410 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
|+++|.++++.. +.|.+.-+.+.-+++..|++.+|..+|.+..+... ....+|..+.++|..+|+|..|+++|+...+
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999776 55888999999999999999999999999988632 3456789999999999999999999999887
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 490 K-GVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 490 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
. .-..+......|.+++.+.|.+.+|.+ .+..+...
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~--~ll~a~~~ 745 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKE--ALLKARHL 745 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHh
Confidence 6 334467888999999999999999999 88888755
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-17 Score=170.85 Aligned_cols=437 Identities=12% Similarity=0.058 Sum_probs=298.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPV-SSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
..+.|+++.|+..|+++++.+|. ++ ..+ .++..+...|+.++|+..++++.. |+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~------------------ 98 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPL--QSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SM------------------ 98 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCcc--chhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CC------------------
Confidence 35788999999999999888877 43 333 777778888888888888888772 21
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
+........++..|...|++++|+++|+++.+.. |.+...+..++..+...++.++|++.++.+
T Consensus 99 ---------n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 99 ---------NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred ---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 1123333444667777888888888888888875 555667777778888888888888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHH
Q 047932 208 KDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTF 287 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (598)
... .|+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+...
T Consensus 163 ~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~ 238 (822)
T PRK14574 163 AER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHY 238 (822)
T ss_pred ccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHH
Confidence 765 4454555444444444566656888888888763 335666677777888888887777666543221 111111
Q ss_pred H------HHHHHHHH---H--hcCC---HHHHHHHHHHHHHC-C-CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHH
Q 047932 288 V------YNTLMDGF---C--LTGR---VNHAKELFVSMESN-G-CMHDVVSY----TTLINGYCKTKNVEEALNLYRKM 347 (598)
Q Consensus 288 ~------~~~ll~~~---~--~~g~---~~~a~~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~ 347 (598)
. ...+++.- . ...+ .+.|+.-++.+... + .|+....| .-.+-++...+++.++++.|+.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 0 01111100 0 1112 34455555555442 1 12222222 12345667788899999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 348 LPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND-----VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
...+.+....+...+..+|...+++++|..+|..+.... .+++......|.-++...+++++|..+++.+.+...
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 887765556677888889999999999999999886643 123444456788888899999999999998876321
Q ss_pred -------------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 423 -------------ELDI-ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 423 -------------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
.||- .....++..+...|++.+|++.++++.... +-|......+...+...|.+.+|.+.++.+.
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 1222 234556777888999999999999998763 3477888888889999999999999997777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHH
Q 047932 489 AKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLIC 539 (598)
Q Consensus 489 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~ 539 (598)
... +.+..+....+.++...|++++|.. +++.+.+. .|+....
T Consensus 478 ~l~-P~~~~~~~~~~~~al~l~e~~~A~~--~~~~l~~~-----~Pe~~~~ 520 (822)
T PRK14574 478 SLA-PRSLILERAQAETAMALQEWHQMEL--LTDDVISR-----SPEDIPS 520 (822)
T ss_pred hhC-CccHHHHHHHHHHHHhhhhHHHHHH--HHHHHHhh-----CCCchhH
Confidence 653 4456777788888899999999999 99888855 5655443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-15 Score=141.58 Aligned_cols=434 Identities=12% Similarity=0.033 Sum_probs=203.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHH
Q 047932 120 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDK 199 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 199 (598)
.++.|..++++..+. ++.+..+|.+-...--.+|+.+...+++++....-..-| +..+...|..=...|-+.|..-.
T Consensus 421 tYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng--v~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 421 TYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG--VEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc--eeecHHHHHHHHHHHhhcCChhh
Confidence 444444444444432 233444444444444444444444444443221100000 23334444444444444444444
Q ss_pred HHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047932 200 AMELFLQMKDENINP--NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLM 277 (598)
Q Consensus 200 A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 277 (598)
+..+.......|+.- -..+|..-...|.+.+.++-|..+|...++. .+-+...|......--..|..++...+|+++
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444444444433321 1224444444444555555555555544443 2223334443333333444455555555555
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHH
Q 047932 278 IQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV 357 (598)
Q Consensus 278 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 357 (598)
... .+-....|......+-..|+...|..++..+.+.. +.+...|.+-+.....+.+++.|..+|.+.... .|+..
T Consensus 577 v~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeR 652 (913)
T KOG0495|consen 577 VEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTER 652 (913)
T ss_pred HHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcch
Confidence 443 12223333333444444555555555555554443 224444555555555555555555555555443 23344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC 437 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (598)
.|.--+...-..++.++|.+++++.++. .+.-...|..+.+.+-+.++.+.|...|..-.+. ++-.+..|..|...--
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence 4433333334445555555555555543 1222444445555555555555555555444432 2333444555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 438 KIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+.|.+-.|..++++..-.+. .+...|...|+.-.+.|+.+.|..++.++++. .+-+...|..-|...-+.++..++..
T Consensus 731 k~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHH
Confidence 55555555555555544322 24445555555555555555555555555543 23344444444444444443222222
Q ss_pred hHHHHHHHhcccCCCCCChHHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHhhh
Q 047932 518 GKLMSQMSSCWSMCFQPKTLICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIH 575 (598)
Q Consensus 518 ~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~ 575 (598)
.+++- .-|+..... +++...++++|++-|++++.++|++.+++..++.
T Consensus 809 --ALkkc--------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk 859 (913)
T KOG0495|consen 809 --ALKKC--------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK 859 (913)
T ss_pred --HHHhc--------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence 22111 222222222 5667788888999999999999999988766644
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-16 Score=140.44 Aligned_cols=460 Identities=12% Similarity=0.099 Sum_probs=348.9
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc----c
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----R 120 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~ 120 (598)
|+++-..++++..|..+|++++..+-. +...|...+..-.++.....|+.++++++..-...|..-|..+.-. +
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r--~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYR--NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence 566667899999999999999988754 8899999999999999999999999999987444444444444333 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHH
Q 047932 121 IMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKA 200 (598)
Q Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 200 (598)
+..|+++|++-... .|+...|++.|..=.+....+.|..++++.+- +.|++.+|-.....-.+.|+...|
T Consensus 157 i~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 157 IAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred cHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHH
Confidence 99999999999876 89999999999999999999999999999987 569999999999999999999999
Q ss_pred HHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhCCCHHHHHHH---
Q 047932 201 MELFLQMKDE-NI-NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN--VVTFSVIVDELCKNGKMEEASRL--- 273 (598)
Q Consensus 201 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--- 273 (598)
..+|+...+. |- ..+...++++...-..+..++.|.-+|+-.+.. ++.+ ...|..+...--+-|+.......
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 9999988764 11 112335556666666788899999999988876 3333 34555555444456665443332
Q ss_pred -----HHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHH--------HHhcCCHH
Q 047932 274 -----LDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDV--VSYTTLING--------YCKTKNVE 338 (598)
Q Consensus 274 -----~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~~~~ 338 (598)
++.++..+ +-|-.+|-..+..-...|+.+...++|+.....- ||-. ..|...|-. -....+.+
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444443 4467788888888888999999999999998763 4421 223222221 13467899
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047932 339 EALNLYRKMLPKGIRPTVVTYSTLFLGL----FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELF 414 (598)
Q Consensus 339 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 414 (598)
.+.++++..++. ++-...||..+--.| .++.+...|.+++..++.. .|-..+|...|..-.+.++++.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999988874 333556666554444 4678999999999888754 678889999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 415 CAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVG-LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVE 493 (598)
Q Consensus 415 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (598)
++.+.-+ +-+..+|......-...|+.+.|..+|+-+++.. +......|.+.|..-...|.++.|..+|+++++..
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt-- 537 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT-- 537 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--
Confidence 9999876 4588899999999999999999999999988742 11124567777887789999999999999999863
Q ss_pred CCHHHHHHHHHHHH-----hcC-----------CccccchhHHHHHHHhc
Q 047932 494 PDCVIFNTIMLGFI-----RNN-----------ETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 494 p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~~ 527 (598)
+....|.+...--. +.| ....|.. +|+.+...
T Consensus 538 ~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~--iferAn~~ 585 (677)
T KOG1915|consen 538 QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARK--IFERANTY 585 (677)
T ss_pred ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHH--HHHHHHHH
Confidence 44456666654322 233 3345666 77776544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-15 Score=148.81 Aligned_cols=504 Identities=13% Similarity=0.102 Sum_probs=309.5
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHhc-----cHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-THSILINC-----RIME 123 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~-----~~~~ 123 (598)
.-.|++++|.+++.++++..|. ++.+|.++...|-++|+.+++...+-.+... .|... .|..+-.. +++.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHH
Confidence 3459999999999999999987 8999999999999999999999888776654 34433 33332222 7999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHH----HHHHHHHHhcCCHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTY----NTIIDGVCKEGFVDK 199 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~ 199 (598)
|+-.|.++++.++ ++...+-.-...|-+.|+...|...|.++....+ +.|..-. ..++..+...++-+.
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p------~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP------PVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999998853 3555555567889999999999999999998761 2222222 334566777788899
Q ss_pred HHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCCH
Q 047932 200 AMELFLQMKDE-NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG---------------------------VHPNV 251 (598)
Q Consensus 200 A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~ 251 (598)
|.+.++..... +-..+...++.++..+.+...++.+......+.... ..++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99988887763 223356678888888999999999888887776511 11111
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047932 252 VTFSVIVDELCKNGKMEEASRLLDLMIQIG--VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLIN 329 (598)
Q Consensus 252 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (598)
..+ .++-++......+....+...+.+.. +.-+...|..+..++.+.|++..|+.+|..+.....-.+...|-.+..
T Consensus 379 ~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 221 12223334444444444444444443 233455666777777777777777777777776644445666777777
Q ss_pred HHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCcCHHHHHHHHHHH
Q 047932 330 GYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN--------DVAADTYIYNTFIDGL 401 (598)
Q Consensus 330 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~ 401 (598)
+|...|.+++|.+.|+.+....+. +...-..|...+.+.|+.++|.+.+..+... ...|+..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 777777777777777777665222 3344455556666777777777777664321 2333444444444455
Q ss_pred HHcCCHHHHHHHHHHHhhC-------------------------------------------------------------
Q 047932 402 CKNGFVLEALELFCAIGNS------------------------------------------------------------- 420 (598)
Q Consensus 402 ~~~g~~~~A~~~~~~~~~~------------------------------------------------------------- 420 (598)
.+.|+.++-...-..++..
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 5555555433222222100
Q ss_pred --CCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 047932 421 --KYELD-I-ISYSCLIDGLCKIGKLETAWELFQSLSRVGL--LPNV---VTYNIMIHGLCNDGQMDKAHDLFLDMEAK- 490 (598)
Q Consensus 421 --~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 490 (598)
+...+ . ..+..++.++.+.+++.+|..+...+..... .++. ..-+..+.+.+..+++..|...++.|...
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 00000 0 1234556667777788888777777665321 1111 11233445566778888888888777754
Q ss_pred CC--CC-CHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCCCCChhhHHHhhhcCcccc
Q 047932 491 GV--EP-DCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDMSPGDTMFSTALLMDPDCS 567 (598)
Q Consensus 491 ~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P~~~ 567 (598)
+. .| -...|+.......+.|+-.--.+ ++..+...++.+..|-...+.......+.+..|...+-++....|++|
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R--~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~P 774 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLR--LIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSP 774 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCc
Confidence 11 11 12334444445555554333333 444443331111122222233355556777888888888888888887
Q ss_pred c
Q 047932 568 C 568 (598)
Q Consensus 568 ~ 568 (598)
-
T Consensus 775 l 775 (895)
T KOG2076|consen 775 L 775 (895)
T ss_pred H
Confidence 6
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-16 Score=144.48 Aligned_cols=416 Identities=17% Similarity=0.135 Sum_probs=207.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------cHHHHHHHHHHHHHcCCCC----CHhhHHHH
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------RIMEAAALFTKLRVFGCEP----DVFTYNTL 146 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~~~~a~~~~~~~~~~~~~~----~~~~~~~l 146 (598)
....+.+-|..+..+.+|+..|+-..+....|+.-.+..-+.. .+..|++.|+-.+..-+.. .....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3445566666777788899999888888777776554433333 6778888888766541111 12346666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----------
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN----------- 215 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------- 215 (598)
...+.+.|+++.|+..|+.+.+.. |+..+-..|+-++..-|+.++..+.|..|......+|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 677888899999999999888754 6666555566666677888888888888875422222
Q ss_pred -HHHHHHH-----HHHHHhcC--CHHHHHHHHHHHHHCCCCCC---------------------HhhHHHHHHHHHhCCC
Q 047932 216 -VVTYNSL-----IHCFSHAD--DWNEAKRLFIKMMDQGVHPN---------------------VVTFSVIVDELCKNGK 266 (598)
Q Consensus 216 -~~~~~~l-----~~~~~~~~--~~~~a~~~~~~~~~~~~~~~---------------------~~~~~~l~~~~~~~g~ 266 (598)
....+.- +.-.-+.+ +.++++-.--+++.--+.|+ ...=..-...+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 1111111 11111111 11111111111111001110 0000112234567777
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHH------------------------------------HhcCCHHHHHHHHH
Q 047932 267 MEEASRLLDLMIQIGVHPNTFVYNTLMDGF------------------------------------CLTGRVNHAKELFV 310 (598)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~------------------------------------~~~g~~~~a~~~~~ 310 (598)
++.|+++++-..+.+-+.-...-+.|...+ ...|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 777777776665543222222222222222 22344555555555
Q ss_pred HHHHCCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 047932 311 SMESNGCMHDVVSYTTL---INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDV 387 (598)
Q Consensus 311 ~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 387 (598)
+.+.. |..+-.+| .-.+-..|+.++|++.|-++... ...+..++..+...|....+..+|++++.+.... +
T Consensus 515 eal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 515 EALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 55443 22211111 22233445555555555443321 1113344444444455555555555555444433 3
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047932 388 AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIM 467 (598)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 467 (598)
+.|+.+...+...|-+.|+-..|.+.+-.--.. ++.+..+...|...|....-+++++.+|++..- +.|+..-|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 444555555555555555555555443332211 234445555555555555555555555555433 34555555554
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 468 IHGLC-NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 468 ~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
+..|. +.|++++|..+|+....+ ++.|......|++.+...|
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 44333 445555555555554432 3445555555555554444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-14 Score=133.33 Aligned_cols=486 Identities=12% Similarity=0.067 Sum_probs=378.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH--Hhc---cHHHHHHHH
Q 047932 54 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL--INC---RIMEAAALF 128 (598)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--l~~---~~~~a~~~~ 128 (598)
+.++|+.++.++.+--|. +...|..+.+. .-|+.|..++.++.+. +.-+...|.+. +.. +.+...++.
T Consensus 391 ~~~darilL~rAveccp~--s~dLwlAlarL----etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQ--SMDLWLALARL----ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred ChHHHHHHHHHHHHhccc--hHHHHHHHHHH----HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 456688888888776665 77777665544 5588888888887764 33333344322 221 444444444
Q ss_pred HH----HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047932 129 TK----LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELF 204 (598)
Q Consensus 129 ~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 204 (598)
.+ +...|+..+...|..=...|-+.|..-.+..+.......+.+ -..-..||..-...|.+.+.++-|..+|
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE----eed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE----EEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc----cchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 43 334577888888888888999999998888888888776621 1223568999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP 284 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (598)
...++. .+-+...|......--..|..+....+|++.... ++-....|......+...|++..|..++..+.+....
T Consensus 540 a~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 540 AHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 999885 3336677877777777789999999999999887 4446667777888888999999999999999987533
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCC-HHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT-VVTYSTLF 363 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 363 (598)
+...|.+.+.......+++.|..+|.+.... .++...|.--+...--.++.++|++++++..+. -|+ ...|..+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLG 692 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHh
Confidence 6778888889999999999999999999876 567778877777777789999999999998876 344 45677888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (598)
+.+-+.++.+.|...|..-.+. ++..+..|..+...--+.|.+-.|..++++..-.+ +.+...|...+++-.+.|..+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHH
Confidence 8899999999999999887765 46677888888888889999999999999998766 558889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHH
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQ 523 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (598)
.|..+..+.++. .+.+...|..-|....+.++-......+++. .-|++....+...+....++++|.+ +|.+
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~--Wf~R 842 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKARE--WFER 842 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999999998875 3445677777777777777755555555443 4588888899999999999999999 9999
Q ss_pred HHhcccCCCCCChH-HHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhH
Q 047932 524 MSSCWSMCFQPKTL-ICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLES 572 (598)
Q Consensus 524 ~~~~~~~~~~p~~~-~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~ 572 (598)
..+. .||.- +|.. ....+|..+.-.+++.+...-.|.+..-+-.
T Consensus 843 avk~-----d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 843 AVKK-----DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHcc-----CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 9965 56543 3333 4455788888899999999999998885543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-14 Score=129.00 Aligned_cols=453 Identities=10% Similarity=0.100 Sum_probs=339.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHHHHHHHHHH
Q 047932 59 LCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAALFTKLRV 133 (598)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~~~~~~~~~ 133 (598)
.+-|+..++.+- -+...|...++.-..++++..|+++|++++... ..+...|...+.. .+..|+.++++.+.
T Consensus 59 RkefEd~irrnR--~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 59 RKEFEDQIRRNR--LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 344555554443 377889999998889999999999999999764 4444455555444 88899999999887
Q ss_pred cCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 047932 134 FGCEPDV-FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI 212 (598)
Q Consensus 134 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 212 (598)
. -|-+ ..|-..+..=-..|+...|.++|++... ..|+...|++.|..-.+.+.++.|..++++..-.
T Consensus 136 ~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerfV~~-- 203 (677)
T KOG1915|consen 136 I--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV-- 203 (677)
T ss_pred h--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--
Confidence 5 2333 3466666666778999999999999988 4699999999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC--HH
Q 047932 213 NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHP---NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN--TF 287 (598)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~ 287 (598)
.|++.+|--..+.-.+.|....+..+|+...+. +.. +...+.+....-.++..++.|.-+|+-.+..- +.+ ..
T Consensus 204 HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raee 281 (677)
T KOG1915|consen 204 HPKVSNWIKYARFEEKHGNVALARSVYERAIEF-LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEE 281 (677)
T ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHH
Confidence 589999999999999999999999999988764 111 12234444444456778899999999888762 223 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH--H
Q 047932 288 VYNTLMDGFCLTGRVNHAKEL--------FVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV--V 357 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~ 357 (598)
.|..+...--+-|+....... ++.+.+.+ +.|-.+|--.+..-...|+.+...++|++++.. ++|-. .
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 555555555555664443332 34445443 668888888888888899999999999999876 44421 1
Q ss_pred HHHHHHH-----HH---HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH----HHcCCHHHHHHHHHHHhhCCCCCC
Q 047932 358 TYSTLFL-----GL---FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGL----CKNGFVLEALELFCAIGNSKYELD 425 (598)
Q Consensus 358 ~~~~l~~-----~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~ 425 (598)
.|...|- ++ ....+.+.+.++|+..++. +|....+|.-+--.| .++.++..|.+++..++.. -|.
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK 436 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCc
Confidence 1221111 11 2578999999999999884 555666666554444 5778999999999988744 678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG-VEPDCVIFNTIML 504 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~ 504 (598)
..+|...|..-.+.+.++.+..++++.++.++ -+..+|......-...|+.+.|..+|.-+++.. +..-...|...+.
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 88999999999999999999999999999643 367888888888888999999999999998753 1222345666666
Q ss_pred HHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 505 GFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
--...|.+++|.. +++++++. .+...+|..
T Consensus 516 FEi~~~E~ekaR~--LYerlL~r-----t~h~kvWis 545 (677)
T KOG1915|consen 516 FEIEEGEFEKARA--LYERLLDR-----TQHVKVWIS 545 (677)
T ss_pred hhhhcchHHHHHH--HHHHHHHh-----cccchHHHh
Confidence 6678999999999 99999966 455556655
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-13 Score=124.50 Aligned_cols=405 Identities=16% Similarity=0.250 Sum_probs=232.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-------c-HHHHHHHHHHHHHcC----------
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-------R-IMEAAALFTKLRVFG---------- 135 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-------~-~~~a~~~~~~~~~~~---------- 135 (598)
.++.-+.++. +..+|...++.-+|++|.+.|....+..-..++.. + +-.-.+.|-.|...|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 3444555555 35678899999999999988876655544444432 0 000111111221111
Q ss_pred ---------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 136 ---------CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQ 206 (598)
Q Consensus 136 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 206 (598)
.+.+..++..+|.++|+--+.+.|.+++++..... .+.+..+||.+|.+-.-. ...+++.+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~----~~K~Lv~E 263 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYS----VGKKLVAE 263 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhh----ccHHHHHH
Confidence 12345667777777777777777777777776655 466777777777654322 22667777
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHH-HHHHHHHHHhc-
Q 047932 207 MKDENINPNVVTYNSLIHCFSHADDWNE----AKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEE-ASRLLDLMIQI- 280 (598)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~- 280 (598)
|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++...
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 7777777777778877777777776654 34566677777777777777777777777666533 44444444332
Q ss_pred -C--C----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 281 -G--V----HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG----CMHD---VVSYTTLINGYCKTKNVEEALNLYRK 346 (598)
Q Consensus 281 -~--~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 346 (598)
| + +.|...|...+..|.+..+.+.|.++..-+.... ++++ ..-|..+....|+....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 2244456666667777777777776665443221 1222 22344555666667777777777777
Q ss_pred HccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC-CH--------H----H-HHH
Q 047932 347 MLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG-FV--------L----E-ALE 412 (598)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~----~-A~~ 412 (598)
|...-.-|+..+...++++..-.+.++-..+++..++..|..........++..+++.. +. . + |..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 77766667777777777777777777777777777766553333333333333333222 00 0 0 111
Q ss_pred HHH-------HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHH
Q 047932 413 LFC-------AIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL----PNVVTYNIMIHGLCNDGQMDKAH 481 (598)
Q Consensus 413 ~~~-------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~ 481 (598)
+++ ++.+. .......+.++..+.+.|+.++|.+++..+.+.+-+ |......-++....+.++...|+
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 111 11111 233445556666666667777777766666443211 22222334444555566666666
Q ss_pred HHHHHHHHCC
Q 047932 482 DLFLDMEAKG 491 (598)
Q Consensus 482 ~~~~~~~~~~ 491 (598)
.+++-|...+
T Consensus 582 ~~lQ~a~~~n 591 (625)
T KOG4422|consen 582 EVLQLASAFN 591 (625)
T ss_pred HHHHHHHHcC
Confidence 6666665443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-13 Score=119.69 Aligned_cols=405 Identities=16% Similarity=0.167 Sum_probs=268.2
Q ss_pred HHHHhc-cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC--hhHH-HHHHHHHHhcCCCCcc-------------c
Q 047932 114 SILINC-RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH--TIVA-LNLFEEMANGNGEFGV-------------V 176 (598)
Q Consensus 114 ~~ll~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A-~~~~~~~~~~~~~~~~-------------~ 176 (598)
..+|+. .+.++.-+|+.|.+.|.+.+...-..|+..-+-.+. +.-| .+-|-.|...+...+. .
T Consensus 123 ~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~ 202 (625)
T KOG4422|consen 123 LKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFET 202 (625)
T ss_pred HHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhh
Confidence 334444 677888899999998877777666666554443322 2211 2222233332211110 1
Q ss_pred cCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 047932 177 CKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSV 256 (598)
Q Consensus 177 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (598)
.|....++.++|.++|+-...++|.+++++......+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|.
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 3456788999999999999999999999999888778899999999876543333 788889999889999999999
Q ss_pred HHHHHHhCCCHHH----HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC----CC----CCChhh
Q 047932 257 IVDELCKNGKMEE----ASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNH-AKELFVSMESN----GC----MHDVVS 323 (598)
Q Consensus 257 l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~----~~----~~~~~~ 323 (598)
++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++... .+ +.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 56788899999999999999999999988887654 44455554432 22 224455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKG----IRPT---VVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNT 396 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 396 (598)
|..-+..|.+..+.+-|.++..-..... +.|+ ..-|..+....+.....+....+|+.|+-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 6667788888888888887766554321 2222 23456677777888888999999999988777788888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-C---H-----------------HHHHHHHHHHHhC
Q 047932 397 FIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIG-K---L-----------------ETAWELFQSLSRV 455 (598)
Q Consensus 397 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---~-----------------~~A~~~~~~~~~~ 455 (598)
++++....|.++-.-++|..+...|...+.....-++..+++.+ . . +.....-.++.+.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 99988888888888888888876654333333333333333322 0 0 0001111122222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 456 GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG----VEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 456 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
.+ .....+..+-.+.+.|..++|.+++..+.+.+ ..|......-++..-.+.+.+-.|.. .++-|..
T Consensus 519 ~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~--~lQ~a~~ 589 (625)
T KOG4422|consen 519 DW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE--VLQLASA 589 (625)
T ss_pred cC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH--HHHHHHH
Confidence 22 23345555556677788888888777775442 12333333445555556666666777 6666653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=137.71 Aligned_cols=437 Identities=14% Similarity=0.080 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC--HhHHHHHHHHHHhcCC
Q 047932 120 RIMEAAALFTKLRVFGCEPDVFTY-NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD--TVTYNTIIDGVCKEGF 196 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~ 196 (598)
...+|+..|+-+++...-|+.... ..+..++.+...+.+|++.|+..+..-+. +..+ ....+.+...+.+.|+
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps----ink~~rikil~nigvtfiq~gq 291 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS----INKDMRIKILNNIGVTFIQAGQ 291 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc----cchhhHHHHHhhcCeeEEeccc
Confidence 555666666666665555555433 34566777777778888777776654311 1111 2234555556677788
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--------HHHHHHHHhCCC--
Q 047932 197 VDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTF--------SVIVDELCKNGK-- 266 (598)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~-- 266 (598)
++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.....+|..-| ..|+.-..+...
T Consensus 292 y~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 292 YDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred chhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 88888888777664 466666555666667777888888888887765444544322 122222111111
Q ss_pred ------HHHHHHHHHHHHh---cCCCcCHH-------------HHH--------HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 267 ------MEEASRLLDLMIQ---IGVHPNTF-------------VYN--------TLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 267 ------~~~a~~~~~~~~~---~~~~~~~~-------------~~~--------~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
-..|.+.+-...+ --+.|+-. .+. .-...+.+.|+++.|.++++-+.+..
T Consensus 370 ~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd 449 (840)
T KOG2003|consen 370 NMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD 449 (840)
T ss_pred HHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc
Confidence 1112221111111 01111110 000 01223567788888888777666543
Q ss_pred CCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 047932 317 CMHDVVSYTTLINGYCK--TKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIY 394 (598)
Q Consensus 317 ~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 394 (598)
-..-...-+.|-..+.- -.++..|..+-+.....+ .-+......-.......|++++|...|++.+..+.. .....
T Consensus 450 nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~eal 527 (840)
T KOG2003|consen 450 NKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEAL 527 (840)
T ss_pred chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHH
Confidence 22211111211111111 112333333333222211 001111111111122344555555555555544311 11222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCND 474 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (598)
..+.-.+-..|+.++|+++|-++... +..+..++..+...|....+...|++++-+.... ++.|......|...|-+.
T Consensus 528 fniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 528 FNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred HHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 22233344455555555555443321 1224444555555555555555555555444432 233344455555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCC
Q 047932 475 GQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMS 550 (598)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~ 550 (598)
|+-..|.+++-+-... ++-+..+..-|...|....-+++|+. +++++. -+.|+..-|.. .++..|+++
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~--y~ekaa-----liqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAIN--YFEKAA-----LIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHH--HHHHHH-----hcCccHHHHHHHHHHHHHhcccHH
Confidence 5555555544333221 34444555555555555555555555 555544 23455555544 224445555
Q ss_pred CChhhHHHhhhcCccccchhhHhh
Q 047932 551 PGDTMFSTALLMDPDCSCDLESLI 574 (598)
Q Consensus 551 ~a~~~~~~~l~~~P~~~~~~~~l~ 574 (598)
+|...|+......|+|-..+.-|+
T Consensus 678 ka~d~yk~~hrkfpedldclkflv 701 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLV 701 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHH
Confidence 555555555555555555444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-13 Score=133.73 Aligned_cols=368 Identities=16% Similarity=0.148 Sum_probs=248.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLI 223 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 223 (598)
......+.-.|+.++|..++.++.+.. +.+...|.+|...|-..|+.+++...+-.+...+.+ |...|..+.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~la 214 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLA 214 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHH
Confidence 333444445588888888888888775 566778888888888888888888777666554333 667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHH----HHHHHHHHhc
Q 047932 224 HCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVY----NTLMDGFCLT 299 (598)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~ 299 (598)
......|.+++|.-.|.+.++.. +++...+-.-...|-+.|+...|..-+.++.+...+.|..-+ ...+..+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888763 345555555667778888888888888888776432232222 2334556666
Q ss_pred CCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCC---------------------------
Q 047932 300 GRVNHAKELFVSMESN-GCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKG--------------------------- 351 (598)
Q Consensus 300 g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------- 351 (598)
++-+.|.+.++..... +-..+...++.++..+.+...++.|......+....
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 7777787777776652 123355667778888888888888877777665511
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 352 IRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND--VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429 (598)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 429 (598)
..++... ..+.-++...+..+....+........ +.-+...|.-+..++...|++.+|+.+|..+......-+...|
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 1112222 123334444555555555555555554 3334667888888888888888888888888876555567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHH
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDME--------AKGVEPDCVIFN 500 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~ 500 (598)
-.+..+|...|.+++|.+.|+..+.. .|+ ...-..|...+.+.|+.++|.+.+..+. ..+.+|+.....
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 88888888888888888888888874 333 4455566777788888888888888753 223455555556
Q ss_pred HHHHHHHhcCCccccchhHHHHHHH
Q 047932 501 TIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
.....+...|+.++=.. ....|+
T Consensus 531 ~r~d~l~~~gk~E~fi~--t~~~Lv 553 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFIN--TASTLV 553 (895)
T ss_pred HHHHHHHHhhhHHHHHH--HHHHHH
Confidence 66667777887776555 544444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.8e-12 Score=114.03 Aligned_cols=365 Identities=12% Similarity=0.067 Sum_probs=266.8
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 047932 135 GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP 214 (598)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 214 (598)
+...|...+-..+..+-+.|....|+..|....... |-.-..|.-|.... .+.+.+.. ... +.+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-------P~~W~AWleL~~li---t~~e~~~~----l~~-~l~~ 223 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-------PWFWSAWLELSELI---TDIEILSI----LVV-GLPS 223 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-------CcchHHHHHHHHhh---chHHHHHH----HHh-cCcc
Confidence 445566666666777888999999999999988764 33444444443332 22222222 221 1221
Q ss_pred CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CcCHHHHH
Q 047932 215 NVVTY--NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV--HPNTFVYN 290 (598)
Q Consensus 215 ~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~ 290 (598)
|..-+ -.+..++-.....+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+... -.|..+|.
T Consensus 224 ~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS 303 (559)
T KOG1155|consen 224 DMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS 303 (559)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence 21111 224456666678888888888888888877776666667777888999999999999998742 12455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcC
Q 047932 291 TLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVH 370 (598)
Q Consensus 291 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (598)
.++ |.+..+..- ..+..-...-.+--+.|.-.+.+.|.-.++.++|...|++..+.+.. ....|+.+..-|....
T Consensus 304 N~L--Yv~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmK 378 (559)
T KOG1155|consen 304 NVL--YVKNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMK 378 (559)
T ss_pred HHH--HHHhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhc
Confidence 655 333332221 11211111111335667788889999999999999999999987654 5678899999999999
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047932 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQ 450 (598)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (598)
+...|..-++.+++.+ +.|-..|-.+.++|.-.+.+.-|+-+|+++.... +.|...|.+|..+|.+.++.++|++.|.
T Consensus 379 Nt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred ccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999985 7789999999999999999999999999999765 5689999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH---HHHHHHHHHhcCCccccchhHHHHH
Q 047932 451 SLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK----GVEPDCVI---FNTIMLGFIRNNETSKSSRGKLMSQ 523 (598)
Q Consensus 451 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (598)
+....|- .+...+..|...|-+.++.++|...|++.++. | ..+..+ ..-|..-+.+.+++++|.. +...
T Consensus 457 rai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg-~~~~~t~ka~~fLA~~f~k~~~~~~As~--Ya~~ 532 (559)
T KOG1155|consen 457 RAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEG-EIDDETIKARLFLAEYFKKMKDFDEASY--YATL 532 (559)
T ss_pred HHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHhhcchHHHHH--HHHH
Confidence 9988653 36688999999999999999999999888763 3 223322 3335556778999999888 7777
Q ss_pred HH
Q 047932 524 MS 525 (598)
Q Consensus 524 ~~ 525 (598)
..
T Consensus 533 ~~ 534 (559)
T KOG1155|consen 533 VL 534 (559)
T ss_pred Hh
Confidence 65
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-11 Score=115.81 Aligned_cols=499 Identities=13% Similarity=0.122 Sum_probs=324.0
Q ss_pred HhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHH-HH
Q 047932 40 ERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-THSI-LI 117 (598)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~-ll 117 (598)
+.-..|++.+.++|+...-...|++++..-|.......|...+......|-++-++.+|++.++.. |... -|.. +.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P~~~eeyie~L~ 180 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--PEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--HHHHHHHHHHHH
Confidence 344457888899999999999999999988876777899999999999999999999999999863 4332 2333 33
Q ss_pred hc-cHHHHHHHHHHHHHcC------CCCCHhhHHHHHHHHHhcCChhH---HHHHHHHHHhcCCCCccccCCC--HhHHH
Q 047932 118 NC-RIMEAAALFTKLRVFG------CEPDVFTYNTLINGLCRTGHTIV---ALNLFEEMANGNGEFGVVCKPD--TVTYN 185 (598)
Q Consensus 118 ~~-~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~--~~~~~ 185 (598)
.. ++++|.+.+...+..+ .+.+...|..+.....++-+.-. ...+++.+..+ -+| ...|+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--------ftDq~g~Lw~ 252 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--------FTDQLGFLWC 252 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--------CcHHHHHHHH
Confidence 33 8899998888875421 13345567777777776654433 33444554443 244 45789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHH
Q 047932 186 TIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHA----------------------DDWNEAKRLFIKMM 243 (598)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~ 243 (598)
+|.+.|.+.|.+++|.++|++.... ..++.-|..+.++|+.- -+++-.+.-|+.++
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999998764 22444444444444321 12333444455544
Q ss_pred HCCC-----------CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc------CHHHHHHHHHHHHhcCCHHHHH
Q 047932 244 DQGV-----------HPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP------NTFVYNTLMDGFCLTGRVNHAK 306 (598)
Q Consensus 244 ~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~ 306 (598)
.... +.++..|...+. ...|+..+-...+.++++. +.| -...|..+...|-..|+.+.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 4321 223334443332 3456677777788777764 222 2346888889999999999999
Q ss_pred HHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC----------C-------CHHHHHHHHHHH
Q 047932 307 ELFVSMESNGCMHD---VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR----------P-------TVVTYSTLFLGL 366 (598)
Q Consensus 307 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~ 366 (598)
.+|++..+...+.- ..+|-.....-.+..+++.|+++++......-. | +...|...+..-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 99999987654332 345555566667788899999999887543111 1 223344455555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHc---CCH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDI-ISYSCLIDGLCKI---GKL 442 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~---g~~ 442 (598)
-..|-++....+|+++.+..+. ++.........+-...-++++.++|++-+..-..|++ ..|+..+.-+.+. .++
T Consensus 488 Es~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 5678889999999999887644 3333333344455666788899999887765445554 3777777766652 368
Q ss_pred HHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCccccchh
Q 047932 443 ETAWELFQSLSRVGLLPNVVT--YNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDC--VIFNTIMLGFIRNNETSKSSRG 518 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 518 (598)
+.|..+|++.++ |.+|...- |......--+.|....|+.+++++.. ++++.. ..|+..+.--...=-+.....
T Consensus 567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~- 643 (835)
T KOG2047|consen 567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTRE- 643 (835)
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHH-
Confidence 999999999998 45554322 22222222356888899999998765 344432 455555543322222334445
Q ss_pred HHHHHHHhcccCCCCCChHHHHH------HHHHhCCCCCChhhHHHhhhcC
Q 047932 519 KLMSQMSSCWSMCFQPKTLICSI------SIMLQKDMSPGDTMFSTALLMD 563 (598)
Q Consensus 519 ~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~~~~~a~~~~~~~l~~~ 563 (598)
+++++++. -||...-.+ +-...|..++|+..+...-++.
T Consensus 644 -iYekaIe~-----Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 644 -IYEKAIES-----LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred -HHHHHHHh-----CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 77777754 465544333 2233577777877777776663
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-13 Score=123.11 Aligned_cols=416 Identities=13% Similarity=0.104 Sum_probs=251.5
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-cHHH
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-RIME 123 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~ 123 (598)
-|+.+.+.|.|++|+++|.+++...|. .+..|.....+|...|+|+++.+--.+.++. .|+ ....+++. .-.+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~--Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPD--YVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcH--HHHHHHHHHHHHH
Confidence 577778999999999999999998876 5889999999999999999999988888864 343 22233322 1111
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh--------HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI--------VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG 195 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 195 (598)
.+.-|.+... -.+-.++...+-...-.. .|..-.++-.+.+ .+.+-|+.....+....+...-
T Consensus 195 ~lg~~~eal~------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~n---r~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALF------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKEN---RPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHH------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhccc---CCCCCCcHHHHHHHHhhccccc
Confidence 1111111111 111122222221111111 1222222222211 0112333333333322221100
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC---CCCCC---------HhhHHHHHHHHH
Q 047932 196 FVDKAMELFLQMKDENINPNVVTYNSLIHCFSH-ADDWNEAKRLFIKMMDQ---GVHPN---------VVTFSVIVDELC 262 (598)
Q Consensus 196 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~ 262 (598)
. ..+...+.+-|...-..+=..+.. ...+..|.+.+.+-... ....+ ..+.......+.
T Consensus 266 ~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 K--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred c--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0 000000000011111111111111 11233333333322111 00111 112222223344
Q ss_pred hCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047932 263 KNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALN 342 (598)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 342 (598)
-.|+.-.|..-|+..+..... +...|.-+..+|....+.++....|+...+.+ +.++.+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 568888899999999887543 33337777788999999999999999998876 5578888888888888899999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 343 LYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
-|++.+...+. +...|..+.-+..+.+.++++...|++..+. +|..+.+|+.....+...++++.|.+.|+..+....
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999886433 5566666666677888999999999999887 467788999999999999999999999998876532
Q ss_pred C-----CCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 423 E-----LDIISY--SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 423 ~-----~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
. .+...+ -.++. +.-.+++..|..++++..+.+.+ ....|..|...-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 122211 12222 22348899999999999885432 356788899999999999999999998764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-13 Score=131.14 Aligned_cols=283 Identities=10% Similarity=0.052 Sum_probs=173.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHH--HHHHHHHhcCCHHHH
Q 047932 229 ADDWNEAKRLFIKMMDQGVHPNVVT-FSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYN--TLMDGFCLTGRVNHA 305 (598)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a 305 (598)
.|+++.|.+.+....+.. +++.. |........+.|+++.|..++.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 566666666666544431 12222 222233446667777777777766653 23332222 234566667777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV-------VTYSTLFLGLFEVHQVEHALKL 378 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 378 (598)
...++.+.+.. |.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777766654 445666666677777777777777777777665443211 1222223333334445555555
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047932 379 FDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL 458 (598)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (598)
++.+.+. .+.++.....+...+...|+.++|..++++..+. +++.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 5555433 2446667777777788888888888888777763 4444322 2233334577788888887777652 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 459 PNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
-|...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+ ++++...
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~--~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAA--MRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Confidence 34556677777788888888888888887764 5777777778888888888888877 7777754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-16 Score=144.10 Aligned_cols=262 Identities=15% Similarity=0.103 Sum_probs=108.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQIG-VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT 334 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 334 (598)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45677778888888888886544433 23344555556667777888888888888887764 2355566667666 678
Q ss_pred CCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 335 KNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND-VAADTYIYNTFIDGLCKNGFVLEALEL 413 (598)
Q Consensus 335 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 413 (598)
+++++|.+++....+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766542 455666777788888889999888888876532 345677888888888999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 414 FCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVE 493 (598)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (598)
++++++.. +.|......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.+|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 99988764 3367788888999999999999888888877652 3455667788889999999999999999988764 6
Q ss_pred CCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 494 PDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 494 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
.|+.....+..++...|+.++|.+ +.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~--~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALR--LRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-------------------
T ss_pred cccccccccccccccccccccccc--ccccccc
Confidence 688888899999999999999999 8887754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-13 Score=128.82 Aligned_cols=126 Identities=17% Similarity=0.085 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFL 364 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 364 (598)
+......+...+...|+.++|..++++..+. +++... .++.+....++.+++++..+...+..+. |...+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 3444444444444555555555555444442 222211 1122222334455555555544443221 3334444444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047932 365 GLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAI 417 (598)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 417 (598)
.+...+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|..++++.
T Consensus 337 l~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555443 344444444555555555555555555444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-13 Score=122.73 Aligned_cols=420 Identities=12% Similarity=0.036 Sum_probs=253.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCh
Q 047932 78 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPD-VFTYNTLINGLCRTGHT 156 (598)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 156 (598)
+....+-|.++|++++|++.|.+++.. .|| ...|.....+|...|++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--------------------------------~p~epiFYsNraAcY~~lgd~ 165 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--------------------------------CPDEPIFYSNRAACYESLGDW 165 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--------------------------------CCCCchhhhhHHHHHHHHhhH
Confidence 445555666777777777777777654 345 56677888888889999
Q ss_pred hHHHHHHHHHHhcCCCCccccCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 047932 157 IVALNLFEEMANGNGEFGVVCKPD-TVTYNTIIDGVCKEGFVDKAMELFLQMKD-ENINPNVVTYNSLIHCFSHADDWNE 234 (598)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 234 (598)
++..+---+.++.+ |+ +..+..-..++-..|++++|+.=..-..- .|+. +..+--.+=+.+- ..
T Consensus 166 ~~Vied~TkALEl~--------P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~ 231 (606)
T KOG0547|consen 166 EKVIEDCTKALELN--------PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQ 231 (606)
T ss_pred HHHHHHHHHHhhcC--------cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HH
Confidence 98888888887754 43 55666667777777887776542221111 1111 1111111111111 11
Q ss_pred HHHHHHHHHH-CC--CCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHH
Q 047932 235 AKRLFIKMMD-QG--VHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT-GRVNHAKELFV 310 (598)
Q Consensus 235 a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~ 310 (598)
|..-.++-.+ .+ +-|+.....+...++...-.. .+...+-..|...-..+=..+... ..+..|...+.
T Consensus 232 a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~t 303 (606)
T KOG0547|consen 232 AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKAT 303 (606)
T ss_pred HHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHH
Confidence 2222222222 11 234444333333333211000 000000001111111111111111 12333333333
Q ss_pred HHHHCC---CC---CC------hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 311 SMESNG---CM---HD------VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKL 378 (598)
Q Consensus 311 ~~~~~~---~~---~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 378 (598)
+-.... .. .| ..+.......+.-.|+.-.|..-|+..+.....++. .|..+...|...++.++.+..
T Consensus 304 e~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~ 382 (606)
T KOG0547|consen 304 EECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKD 382 (606)
T ss_pred HHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHH
Confidence 221110 00 01 112222223345578889999999999887555333 377778889999999999999
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047932 379 FDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL 458 (598)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (598)
|+.+.+.+ +.++.+|..-.....-.+++++|..-|++.+... +-+...|..+.-+..+.++++++...|++..+. ++
T Consensus 383 F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP 459 (606)
T KOG0547|consen 383 FNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FP 459 (606)
T ss_pred HHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 99999876 5567788888888888899999999999998765 336677777777778889999999999999876 55
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHH--HHHHHHHhcCCccccchhHHHHHHHhcccCC
Q 047932 459 PNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG-----VEPDCVIFN--TIMLGFIRNNETSKSSRGKLMSQMSSCWSMC 531 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 531 (598)
-.+..|+.....+..+++++.|.+.|+..++.. +..+...+. .++..-. .+++..|.. +++++++
T Consensus 460 ~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~--Ll~KA~e----- 531 (606)
T KOG0547|consen 460 NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAEN--LLRKAIE----- 531 (606)
T ss_pred CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHH--HHHHHHc-----
Confidence 557889999999999999999999999998742 111222221 2222222 378889999 9999984
Q ss_pred CCCChHHHHH----HHHHhCCCCCChhhHHHhhhcC
Q 047932 532 FQPKTLICSI----SIMLQKDMSPGDTMFSTALLMD 563 (598)
Q Consensus 532 ~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~ 563 (598)
+.|....... +...+|++++|+++|+++..+-
T Consensus 532 ~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 532 LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4676554433 5567899999999999987653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-12 Score=128.44 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=68.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPD-TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHAD 230 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (598)
..|+++.|.+.+.+..+.. |+ ...+-....++.+.|+++.|.+.+.+..+....+...........+...|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 4566666666666655532 32 23333444555666666666666666654322211223333455566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
+++.|...++.+.+.. +-+...+..+...+...|+++++.+.+..+.+.+
T Consensus 168 ~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 168 ELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 6666666666666653 2244555666666666666666666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-12 Score=115.94 Aligned_cols=367 Identities=10% Similarity=0.038 Sum_probs=263.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--H
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTF--S 255 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 255 (598)
..|...+-.....+.+.|....|++.|...... .+-.-.+|..|..... +. +....... +.+.+...+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~----e~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DI----EILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hH----HHHHHHHh-cCcccchHHHHH
Confidence 445666666667777889999999999988764 2334445544444322 22 22222222 222222211 1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHh
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCM--HDVVSYTTLINGYCK 333 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 333 (598)
.+..++......+++.+-.+...+.|++.+...-+....+.....|+|+|+.+|+++.+...- .|..+|..++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 244566667788999999999999998877777777777788899999999999999987411 156666665533322
Q ss_pred cCCH-HHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 047932 334 TKNV-EEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412 (598)
Q Consensus 334 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 412 (598)
.... --|..+++ +- +-.+.|...+.+-|+-.++.++|...|+++++.+ +.....|+.+.+-|....+...|..
T Consensus 312 ~skLs~LA~~v~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 2111 12222221 11 1245677888888999999999999999999986 5567889999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047932 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV 492 (598)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (598)
.++.+++.+ +.|...|-.|.++|.-.+.+.-|+-.|++..... +-|...|.+|+.+|.+.++.++|++.|.+....|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999886 5699999999999999999999999999999852 3368899999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcc-cCC-CCCChH---HHHH-HHHHhCCCCCChhhHHHhhhcCc
Q 047932 493 EPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCW-SMC-FQPKTL---ICSI-SIMLQKDMSPGDTMFSTALLMDP 564 (598)
Q Consensus 493 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~p~~~---~~~~-~~~~~~~~~~a~~~~~~~l~~~P 564 (598)
.-+...+..+...|-+.++.++|.. .+++-++.. ..| ..|... .|.+ .....++.++|....-.++.-+|
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~--~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQ--YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 4466889999999999999999999 998877630 001 122111 1222 23446777877776666655443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-13 Score=130.57 Aligned_cols=291 Identities=12% Similarity=0.064 Sum_probs=171.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVV-TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHA 305 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 305 (598)
...|+++.|.+.+.+..+. .|+.. .+-....+....|+++.|.+++.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3467777777777666554 23322 23334455666677777777777765542121122333345666667777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHH
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYS-TLFL---GLFEVHQVEHALKLFDE 381 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~ 381 (598)
...++.+.+.. |.+...+..+...+...|++++|.+.+..+.+.++. +...+. .-.. .....+..+.+...+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777777664 445566667777777777777777777777766443 222221 1111 11222222222334433
Q ss_pred HhhCC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 382 MQHND---VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIIS-YSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 382 ~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
+.+.. .+.+...+..++..+...|+.++|..++++..+......... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 33321 123667777777778888888888888888776532211111 111112223346677777777777664
Q ss_pred CC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 458 LP-NV--VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 458 ~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
.| |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+ ++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~--~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA--MRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHH
Confidence 23 33 45567778888888888888888854333346777777788888888888888888 887764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-12 Score=113.99 Aligned_cols=294 Identities=14% Similarity=0.117 Sum_probs=185.4
Q ss_pred HHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCC--CHhHHHHHHHH
Q 047932 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--DTVTYNTIIDG 190 (598)
Q Consensus 113 ~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~ 190 (598)
.+.+++.+.+.|...|-+|.+.+ +.+..+..+|.+.|-+.|..+.|+.+.+.+..+.. .+- .......|..-
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd-----lT~~qr~lAl~qL~~D 116 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD-----LTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHHH
Confidence 45566667778888888877653 22455667888889899999999999888877531 111 12234556777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhCCC
Q 047932 191 VCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV----VTFSVIVDELCKNGK 266 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~ 266 (598)
|...|-+|+|+++|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 8888888888888888877532 24556777888888888888888888888776544332 245555556666677
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 267 MEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRK 346 (598)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 346 (598)
++.|..++.+..+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+.+
T Consensus 196 ~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77777777777765422 33344445566777777777777777777765444455566677777777777777777777
Q ss_pred HccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc---CCHHHHHHHHHHHh
Q 047932 347 MLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN---GFVLEALELFCAIG 418 (598)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 418 (598)
+.+... ....-..+........-.+.|...+.+-+.. .|+...+..++...... |...+....++.|.
T Consensus 275 ~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 275 AMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 666532 2233333333334444455555555444443 46666666666554332 23344444444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=140.93 Aligned_cols=259 Identities=16% Similarity=0.161 Sum_probs=71.3
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
+..+.+.|++++|+++++........+.++..|..+.......++++.|+..|+++...+.
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~------------------- 75 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK------------------- 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------
Confidence 4445566666666666654433331113555555555555566666666666666654321
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
.+...+..++.. ...+++++|.++++...+.. ++...+..++..+.+.++++++.++++
T Consensus 76 ------------~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 76 ------------ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--------GDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ------------cccccccccccc-cccccccccccccccccccc--------cccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 122233444444 45566666666655544332 334444555555556666666666665
Q ss_pred HHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Q 047932 206 QMKDEN-INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP 284 (598)
Q Consensus 206 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (598)
.+.... .+.+...|..+...+.+.|+.++|++.+++.++.. +.+......++..+...|+.+++..+++...+.. +.
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~ 212 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD 212 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence 554321 23344555555555666666666666666655542 2234455555555555666665555555554432 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKM 347 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 347 (598)
|...+..+..++...|+.++|...|++..... +.|+.....+..++...|+.++|..+..++
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 44445555555555666666666666555532 335555555555555566666665555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-14 Score=134.48 Aligned_cols=290 Identities=14% Similarity=0.032 Sum_probs=197.8
Q ss_pred CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHH
Q 047932 266 KMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC--MHDVVSYTTLINGYCKTKNVEEALNL 343 (598)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 343 (598)
+..+|...|..+... +.-+..+...+..+|...+++++|+++|+.+.+... -.+...|.+.+-.+.+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774443 233445666677888888888888888888776531 1155566665544322 222222
Q ss_pred HH-HHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 344 YR-KMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 344 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
+. .+... -+-.+.+|.++..+|.-+++.+.|++.|+++++.+ +....+|+.+.+-+.....++.|...|+.++...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 22 22222 12356788888888888888888888888888763 3367778888877888888888888888887543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047932 423 ELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTI 502 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 502 (598)
+-+...|-.+...|.+.++++.|.-.|+++.+.+.. +.+....+...+-+.|+.++|+++++++.... +-|+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 224445666777888888888888888888875322 45555666677778888888888888887765 4466555566
Q ss_pred HHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccchhhH
Q 047932 503 MLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCDLES 572 (598)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~ 572 (598)
+..+...+++++|+. .++++.+ +.|+.....+ .+...|+.+.|...|--+..+||.-..+.++
T Consensus 564 ~~il~~~~~~~eal~--~LEeLk~-----~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~~k 630 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQ--ELEELKE-----LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQIK 630 (638)
T ss_pred HHHHHhhcchHHHHH--HHHHHHH-----hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhhHH
Confidence 667777888888888 8888874 4677655544 5666788888888888888888876654433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.5e-10 Score=106.58 Aligned_cols=528 Identities=11% Similarity=0.066 Sum_probs=344.9
Q ss_pred HHHHhhhhhhcchhHHHHHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047932 20 LKESLRLTVKDGASIEKFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFK 99 (598)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 99 (598)
.+.+++.+..+..-....+..+....-....-...++..-..|++++..-.. -+..|...++.+.++|+...-+..|+
T Consensus 49 YERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHk--mpRIwl~Ylq~l~~Q~~iT~tR~tfd 126 (835)
T KOG2047|consen 49 YERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHK--MPRIWLDYLQFLIKQGLITRTRRTFD 126 (835)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3455555555555555666555554433333344455666666666553222 45699999999999999999999998
Q ss_pred HHHhC-CCCCCHHhHHHHHhc-----cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 047932 100 RLNST-GLFPDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 173 (598)
Q Consensus 100 ~~~~~-~~~p~~~~~~~ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 173 (598)
+++.. .+.-....|...+.. -++-+..++++.++. ++..-+-.+..+++.++.++|.+.+...+......
T Consensus 127 rALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~ 202 (835)
T KOG2047|consen 127 RALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV 202 (835)
T ss_pred HHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh
Confidence 87654 112222334444433 677899999999876 33446778899999999999999999988765333
Q ss_pred ccccCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 174 GVVCKPDTVTYNTIIDGVCKEGFVD---KAMELFLQMKDENINPNV--VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH 248 (598)
Q Consensus 174 ~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (598)
+-..+.+...|.-+.+...++-+.- ....+++.+... -+|. ..|++|...|.+.|.+++|.++|++.+.. .
T Consensus 203 sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v 278 (835)
T KOG2047|consen 203 SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--V 278 (835)
T ss_pred hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--h
Confidence 3334566777877777776654433 234455555443 2343 47899999999999999999999998875 2
Q ss_pred CCHhhHHHHHHHHHhCCC----------------------HHHHHHHHHHHHhcCC-----------CcCHHHHHHHHHH
Q 047932 249 PNVVTFSVIVDELCKNGK----------------------MEEASRLLDLMIQIGV-----------HPNTFVYNTLMDG 295 (598)
Q Consensus 249 ~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~~~-----------~~~~~~~~~ll~~ 295 (598)
.+..-|+.+.+.|+.... ++-...-|+.+..... +.+...|..-+.
T Consensus 279 ~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~- 357 (835)
T KOG2047|consen 279 MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK- 357 (835)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh-
Confidence 234444444444443211 2222333333333210 111222222222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCC---HHHHHHHHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMH------DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT---VVTYSTLFLGL 366 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~ 366 (598)
+..|+..+-...+.++...- .| -...|..+...|-..|+.+.|..+|++......+.- ..+|......-
T Consensus 358 -l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 358 -LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred -hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 23566777777787776541 11 234588889999999999999999999987643321 34566666666
Q ss_pred HhcCCHHHHHHHHHHHhhCC-----------CCc------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 367 FEVHQVEHALKLFDEMQHND-----------VAA------DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 429 (598)
.+..+++.|.++++.+.... .++ +..+|...++..-..|-++....+|+++++..+. ++.+.
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii 514 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQII 514 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHH
Confidence 77889999999998875421 111 2234555566666788999999999999987644 66666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPNV-VTYNIMIHGLCN---DGQMDKAHDLFLDMEAKGVEPDCV--IFNTIM 503 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~ 503 (598)
......+-.+.-++++.++|++-+..-..|++ ..|+..+.-+.+ ....+.|..+|+++++ |.+|... .|....
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA 593 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYA 593 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 66666677788899999999987765334553 467777766553 3478999999999999 6676543 222223
Q ss_pred HHHHhcCCccccchhHHHHHHHhcccCCCCCCh--HHHHHHHHH---hCCCCCChhhHHHhhhcCccccc
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKT--LICSISIML---QKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~---~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
..--+.|....|+. +++++... +.+.. ..|+..+.. .-.+..-+.+|+++++.-|++..
T Consensus 594 ~lEEe~GLar~ams--iyerat~~----v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 594 KLEEEHGLARHAMS--IYERATSA----VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred HHHHHhhHHHHHHH--HHHHHHhc----CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 33345788899999 99998755 44443 233332211 23667788999999999998766
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-12 Score=110.94 Aligned_cols=222 Identities=14% Similarity=0.171 Sum_probs=129.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHH
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV------VTYNSLIHC 225 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~ 225 (598)
-.++.++|.++|-+|.+.+ +....+..+|.+.|.+.|..|+|+.+.+.+.++ ||. .+...|..-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRD 116 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHH
Confidence 3466777777777777654 344556667777777777777777777777664 232 133345566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCC
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNT----FVYNTLMDGFCLTGR 301 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~ 301 (598)
|...|-+|.|+.+|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 677777777777777766543 223345566677777777777777777766665433221 133444444445555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 302 VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDE 381 (598)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 381 (598)
.+.|..++.+..+.+ +..+..-..+...+...|+++.|.+.++.+.+.++.--..+...+..+|...|+.++....+..
T Consensus 196 ~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666666655543 2233344445555556666666666666655554333334444555555555555555555555
Q ss_pred HhhC
Q 047932 382 MQHN 385 (598)
Q Consensus 382 ~~~~ 385 (598)
+.+.
T Consensus 275 ~~~~ 278 (389)
T COG2956 275 AMET 278 (389)
T ss_pred HHHc
Confidence 5543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-13 Score=129.40 Aligned_cols=289 Identities=14% Similarity=0.061 Sum_probs=188.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHhc-cHHHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTHSILINC-RIMEAAALF 128 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~-~~~~a~~~~ 128 (598)
+-+..+|+..|...-...++ ..-....++.+|...+++++|..+|+.+.+... --+...|.+.+-. +-+-++..+
T Consensus 332 ~y~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYN--TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 44457899999985454444 335566788899999999999999998876521 1234455555554 444444444
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
.+-+-.--+-...+|.+++.+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 432221113356677777777777777777777777777755 3356777777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
..... +-.+|.-|...|.+.++++.|+-.|++..+.+ +.+......+...+.+.|+.++|+++++++...+.. |+..
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 54111 22344445667777777777777777777654 335556666677777777777777777777766433 4444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR 353 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 353 (598)
-...+..+...+++++|+..++++.+.- |.+...+..+...|.+.|+.+.|+.-|.-+...+++
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 4445556666777777777777776652 445566666777777777777777777766665433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-11 Score=112.09 Aligned_cols=279 Identities=11% Similarity=-0.001 Sum_probs=211.0
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047932 250 NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLIN 329 (598)
Q Consensus 250 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (598)
+.........-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- |....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444455566777888999999998888764 4556666666778888888887777777777653 667888888888
Q ss_pred HHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHH
Q 047932 330 GYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLE 409 (598)
Q Consensus 330 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 409 (598)
.|...|+..+|.+.|.+....+.. =...|......++-.+..++|...+..+.+.- +.....+..+.--|.+.++++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 888889999999999887765332 34577888888888899999998888777652 2233333445556788889999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 410 ALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV--GLL----PNVVTYNIMIHGLCNDGQMDKAHDL 483 (598)
Q Consensus 410 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A~~~ 483 (598)
|..+|.++.... +-|+.+.+-+.-.....+.+.+|..+|+..+.. ... --..+++.|+.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999888664 557888888888888888899999988877631 011 1234678888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 484 FLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 484 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
+++.+... +.+..++.+++-+|...|+++.|+. .|.+.+ .+.|+..+...
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid--~fhKaL-----~l~p~n~~~~~ 527 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAID--HFHKAL-----ALKPDNIFISE 527 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH--HHHHHH-----hcCCccHHHHH
Confidence 99988865 6688888888888999999999999 999888 66888765544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-12 Score=112.84 Aligned_cols=287 Identities=11% Similarity=0.088 Sum_probs=180.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 229 ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKEL 308 (598)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 308 (598)
.|+|.+|+++..+-.+.+-. ....|..-+++.-..|+.+.+-.++.++.+..-.++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665554322 22233334445556666666666666665543334444555555666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 309 FVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV-------VTYSTLFLGLFEVHQVEHALKLFDE 381 (598)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 381 (598)
+.++.+.+ +...........+|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666554 345555666666666666666666666666665544332 3445555555555555555556655
Q ss_pred HhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 047932 382 MQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNV 461 (598)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 461 (598)
..+. ...++..-..++.-+.++|+.++|.++..+..+.+..|. -...-.+.+-++.+.-++..++.... .+.+.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5443 244566666777778888888888888888877765554 12223345667777777777766554 22344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 462 VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
..+.+|...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|++.+|.+ ..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~--~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQ--VRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHH--HHHHHHHH
Confidence 66777888888888888888888877764 5788888888888888888888888 77776643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-11 Score=112.40 Aligned_cols=287 Identities=13% Similarity=0.094 Sum_probs=228.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 047932 213 NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292 (598)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (598)
.-+.........-+...+++.+..++++.+.+. .++....+..-+.++...|+..+-..+=.++++. .+....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 335555666667788899999999999999887 4666677777778999999998888888888776 34467789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQV 372 (598)
Q Consensus 293 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 372 (598)
..-|...|+.++|.+.|.+....+ +.-...|-.+...|.-.|..++|...+..+-+. ++-....+.-+..-|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 999999999999999999987664 234567999999999999999999999877654 111222233455568889999
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047932 373 EHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS------KYELDIISYSCLIDGLCKIGKLETAW 446 (598)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~ 446 (598)
..|.+.|.++.... |.|+...+.+.-.....+.+.+|..+|+..+.. .......+++.|..+|.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999998864 678889998888888899999999999987621 11124557899999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 447 ELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
..+++.+... +.+..++.++.-.|...|+++.|++.|.+.+. +.|+..+...++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999998863 44788999999999999999999999999986 5677766666655443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-11 Score=105.97 Aligned_cols=447 Identities=13% Similarity=0.136 Sum_probs=256.4
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIME 123 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~ 123 (598)
++...|+..|+.+++-....+.. -....-..++..+...|++++|...|..+..... ++...+..+..+ .+.+
T Consensus 32 fls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhHHHHHHHHHHHHH
Confidence 34567789999998877643322 1112333456677789999999999998876542 332222222221 4555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
|..+-.+.. .+...-..+...-.+.|+-++-..+.+.+.. ....-.+|.........+.+|+++
T Consensus 110 A~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----------~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 110 AKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----------TLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----------hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 544433332 1233334445555566666555555444432 123334445544445567778888
Q ss_pred HHHHhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 204 FLQMKDENINPNVVTYN-SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
+.++...+ |+-...| .+.-+|.+..-++-+.+++...++. ++.++...+..+....+.=+-..|.+-.+.+...+-
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 87777642 2333333 2445667777777777777776665 343444444444333333233334444444443321
Q ss_pred CcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHH
Q 047932 283 HPNTFVYNTLMDGFCLT-----GRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV 357 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 357 (598)
.. ...+.-.++. ..-+.|++++-.+.+. -+..-..|+-.|.++++..+|..+.+++... .|-.
T Consensus 251 ~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~E- 318 (557)
T KOG3785|consen 251 QE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYE- 318 (557)
T ss_pred cc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHH-
Confidence 11 1112222222 2345666666665544 2333445666788899999999888876543 2222
Q ss_pred HHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 358 TYSTLFLGLFEVH-------QVEHALKLFDEMQHNDVAAD-TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429 (598)
Q Consensus 358 ~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 429 (598)
|..-.-.+...| ...-|...|+-.-..+..-| ..--..+..++.-..++++.+.+++.+...-...|.+.+
T Consensus 319 -yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 319 -YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred -HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 222222222222 34455666655544443333 223345666677777888888888888765444444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNI-MIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIF-NTIMLGFI 507 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~ 507 (598)
.+.++++..|.+.+|.++|-++....++ |..+|.+ |.++|.+.|..+.|..++-++.. +-+..+. ..+..-|.
T Consensus 398 -N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 398 -NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred -HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 4788899999999999999887665444 4555554 55788899999988877654432 3333333 33446688
Q ss_pred hcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 508 RNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
+.+.+--|.+ .|..+. .+.|+++.|..
T Consensus 473 k~~eFyyaaK--AFd~lE-----~lDP~pEnWeG 499 (557)
T KOG3785|consen 473 KANEFYYAAK--AFDELE-----ILDPTPENWEG 499 (557)
T ss_pred HHHHHHHHHH--hhhHHH-----ccCCCccccCC
Confidence 8888877777 777776 45788888865
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-11 Score=106.35 Aligned_cols=293 Identities=12% Similarity=0.084 Sum_probs=232.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHH
Q 047932 193 KEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASR 272 (598)
Q Consensus 193 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 272 (598)
-.|++.+|+++..+..+.+-. ....|..-+.+--..|+.+.+-.++.+..+..-.++....-...+.....|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 379999999999998877544 4455666677788899999999999999886445566677778888999999999999
Q ss_pred HHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHH
Q 047932 273 LLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVV-------SYTTLINGYCKTKNVEEALNLYR 345 (598)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~ 345 (598)
-+.++...+ +.++.+......+|.+.|++.....++..+.+.+.-.+.. +|..++.-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998875 3477888899999999999999999999999988655543 45556655555555555555565
Q ss_pred HHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 047932 346 KMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD 425 (598)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 425 (598)
....+ .+-++.....++.-+.+.|+.++|.++..+..+.+..+.. ...-.+.+-++.+.-++..+...+.. +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 55443 3446667778888899999999999999999988765552 12224567788888777777776553 446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 495 (598)
+..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.+..++.+..-.+|+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 78899999999999999999999998887 478999999999999999999999999998875433443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-09 Score=97.29 Aligned_cols=298 Identities=14% Similarity=0.062 Sum_probs=200.4
Q ss_pred HhCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047932 262 CKNGKMEEASRLLDLMIQIG-VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEA 340 (598)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 340 (598)
+-.++...+...+-.+.... ++.|......+..++...|+.++|+..|+.....+ +-+........-.+.+.|+++..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhH
Confidence 33455555555444443332 45567778888888888888888888888877653 11222233333445667777777
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 047932 341 LNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS 420 (598)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 420 (598)
..+...+....- -....|-.-+.......++..|+.+-.+.++.+ +.+...+-.-...+...|+.++|.-.|+.+...
T Consensus 286 ~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 777776655321 122333333444456678888888888877764 345556666667778888888888888888765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCC-HH
Q 047932 421 KYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMI-HGLC-NDGQMDKAHDLFLDMEAKGVEPD-CV 497 (598)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~ 497 (598)
. +-+..+|..|+.+|...|++.+|.-+-+...+. +..+..+...+. ..|. ...--++|.+++++.+.. .|+ ..
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 3 446788888999999888888888877776654 334555555442 2333 333447788888887764 454 35
Q ss_pred HHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 498 IFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
....+...|...|..++++. ++++.... .||...... +....+.+++|...|..++.+||+|...+..+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~--LLe~~L~~-----~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIK--LLEKHLII-----FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHhhCccchHHH--HHHHHHhh-----ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 66777788888888889988 88888744 577655544 56677888888899999999999888876655
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-09 Score=103.45 Aligned_cols=421 Identities=15% Similarity=0.134 Sum_probs=275.6
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH---HHHHhc--
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH---SILINC-- 119 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~ll~~-- 119 (598)
-|..+...|+-++|....+..++.++. +...|..++-.+....++++|+.+|+.++.. .||.... .+++..
T Consensus 47 kGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 47 KGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQM 122 (700)
T ss_pred ccchhhcccchHHHHHHHHHHhccCcc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHH
Confidence 366677899999999999999998876 8899999999988889999999999999976 4554432 233333
Q ss_pred -cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHH------HHHH
Q 047932 120 -RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTII------DGVC 192 (598)
Q Consensus 120 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li------~~~~ 192 (598)
+++..........+.. +.....|..++.++.-.|++..|..+++...+... ..|+...+.... ....
T Consensus 123 Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-----~~~s~~~~e~se~~Ly~n~i~~ 196 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-----TSPSKEDYEHSELLLYQNQILI 196 (700)
T ss_pred HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHH
Confidence 5555555555555542 23456788999999999999999999999887652 245555554332 4556
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhCCCHHHHH
Q 047932 193 KEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFS-VIVDELCKNGKMEEAS 271 (598)
Q Consensus 193 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~ 271 (598)
+.|.++.|.+.+..-... +......-..-...+.+.+++++|..++..++.. .||...|. .+..++.+-.+.-++.
T Consensus 197 E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~l 273 (700)
T KOG1156|consen 197 EAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEAL 273 (700)
T ss_pred HcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHH
Confidence 788888888887765543 2223333445567788999999999999999987 45555444 4445554333333444
Q ss_pred -HHHHHHHhcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHH
Q 047932 272 -RLLDLMIQIGVHPNTFVYNTL-MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEE----ALNLYR 345 (598)
Q Consensus 272 -~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~ 345 (598)
.+|....+. .|....-..+ +.......-.+..-.++..+.+.|+++- +..+...|-.....+- +..+..
T Consensus 274 k~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~ 348 (700)
T KOG1156|consen 274 KALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQH 348 (700)
T ss_pred HHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHh
Confidence 555555443 1111111111 1111112223445566777777776543 3333333322221111 111111
Q ss_pred HHccCC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 346 KMLPKG----------IRPTVVT--YSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALEL 413 (598)
Q Consensus 346 ~~~~~~----------~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 413 (598)
.+...| -+|.... +-.++..+-..|+++.|..+++.+..+. |.-...|..-.+.+...|++++|..+
T Consensus 349 ~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 349 SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHH
Confidence 121111 1444443 3456777889999999999999999873 33466677777889999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--------HHHHH--HHHHHhcCCHHHHHHH
Q 047932 414 FCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV--------TYNIM--IHGLCNDGQMDKAHDL 483 (598)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------~~~~l--~~~~~~~g~~~~A~~~ 483 (598)
+++..+.+ .+|...-.--+....+..+.++|.++.....+.|. +.. .|..+ ..+|.+.|++..|++-
T Consensus 428 l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 428 LDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred HHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 99998776 55777666777788889999999999999888764 222 23222 3457788888777766
Q ss_pred HHHH
Q 047932 484 FLDM 487 (598)
Q Consensus 484 ~~~~ 487 (598)
|...
T Consensus 505 fh~i 508 (700)
T KOG1156|consen 505 FHEI 508 (700)
T ss_pred HhhH
Confidence 5544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-09 Score=102.86 Aligned_cols=417 Identities=13% Similarity=0.041 Sum_probs=246.4
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-
Q 047932 136 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP- 214 (598)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~- 214 (598)
+.-|...|..|.-++.+.|+++.+.+.|++....- -.....|..+...|...|.-..|..+++........|
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 34466677777777777777777777777766532 3345677777777777777777777777665543223
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHhCC-----------CHHHHHHHHHHHH
Q 047932 215 NVVTYNSLIHCFS-HADDWNEAKRLFIKMMDQ--GV--HPNVVTFSVIVDELCKNG-----------KMEEASRLLDLMI 278 (598)
Q Consensus 215 ~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~ 278 (598)
+...+-..-..|. +.+..+++++.-.+++.. +. ......|..+.-+|...- ...++++.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 3333333333333 346666666666666552 11 112233444444443211 1345666777776
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHH
Q 047932 279 QIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVT 358 (598)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 358 (598)
+.+.. |+.+...+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.....-.. |...
T Consensus 472 ~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l 549 (799)
T KOG4162|consen 472 QFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVL 549 (799)
T ss_pred hcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhh
Confidence 66432 333333344446667777777777777777655667777777777777777777777777766554111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcCHH-HHH--HHHHH----HHHcCCHHHHHHHHHHH-------------
Q 047932 359 YSTLFLGLFEVHQVEHALKLFDEMQHNDV-AADTY-IYN--TFIDG----LCKNGFVLEALELFCAI------------- 417 (598)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~--~l~~~----~~~~g~~~~A~~~~~~~------------- 417 (598)
...-+..-...++.+++......+...-- .+... +.. .+... ....++..+|......+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 11112222335677777776666543100 00000 000 00000 00000111111111110
Q ss_pred ----hhCCC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 418 ----GNSKY--ELD------IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFL 485 (598)
Q Consensus 418 ----~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (598)
..... .|+ ...|......+.+.+..++|...+.+.... .+-....|......+...|.+.+|.+.|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 10001 122 123556667788889999999888888764 23345667777778888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHH-HHH---HHHHhCCCCCChhhHHHhhh
Q 047932 486 DMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLI-CSI---SIMLQKDMSPGDTMFSTALL 561 (598)
Q Consensus 486 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~---~~~~~~~~~~a~~~~~~~l~ 561 (598)
.....+ |.+.....++..++.+.|+..-|..+-++..+.+ +.|+..- |.. +.+..|+.+.|...|..+++
T Consensus 709 ~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr-----~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR-----LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 998764 4456788899999999998766655457788874 4676544 433 67889999999999999999
Q ss_pred cCccccc
Q 047932 562 MDPDCSC 568 (598)
Q Consensus 562 ~~P~~~~ 568 (598)
+++.+|.
T Consensus 783 Le~S~PV 789 (799)
T KOG4162|consen 783 LEESNPV 789 (799)
T ss_pred hccCCCc
Confidence 9999886
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-11 Score=123.62 Aligned_cols=180 Identities=14% Similarity=0.030 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHH
Q 047932 122 MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAM 201 (598)
Q Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 201 (598)
++|...++++.+.+ +.+..++..+..++...|++++|...|+++.+.+ |.+...+..+...+...|++++|.
T Consensus 321 ~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 321 IKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34444444444443 1244555556666666666666666666666654 344555666666666666666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 202 ELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
..++++.+.+.. +...+..++..+...|++++|...++++.....+.+...+..+..++...|++++|...+.++....
T Consensus 393 ~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 393 QTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 666666654322 2222223333344456666666666665543212233344455555566666666666665554431
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 282 VHPNTFVYNTLMDGFCLTGRVNHAKELFVSME 313 (598)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 313 (598)
+.+....+.+...|...| +.|...++.+.
T Consensus 472 -~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 472 -ITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred -chhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 112223333444444444 24554444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-10 Score=101.11 Aligned_cols=429 Identities=14% Similarity=0.130 Sum_probs=274.4
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc----cHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----RIMEA 124 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~a 124 (598)
....|+|++|+..|..+...+. ++...|-.++..+.-.|.+.+|..+-.++.+. +.....+... +-++-
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-----pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPKT-----PLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHhCcHHH
Confidence 4578999999999998877543 47788888888888889999999988876543 2222222221 22222
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHH-HHHHHHhcCCHHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNT-IIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~ 203 (598)
+..|.+-.+. ...--.+|.......-.+.+|++++.+....+ |+-...|. +.-+|.+..-++-+.++
T Consensus 140 ~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--------~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 140 ILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--------PEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--------hhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 2223222221 22333455555555667899999999998865 44444444 34466788888888888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC-----CCHHHHHHHHHHHH
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN-----GKMEEASRLLDLMI 278 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~ 278 (598)
+.-..+. ++.+..+.|..+....+.=.-..|.+-.+.+...+-. . |- .+.-.++. .+-+.|++++--+.
T Consensus 208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~~-f~~~l~rHNLVvFrngEgALqVLP~L~ 281 (557)
T KOG3785|consen 208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---YP-FIEYLCRHNLVVFRNGEGALQVLPSLM 281 (557)
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---ch-hHHHHHHcCeEEEeCCccHHHhchHHH
Confidence 8887764 4445666666665555543334455555555554311 1 21 22233332 34577888887776
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHccCC
Q 047932 279 QIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTK-------NVEEALNLYRKMLPKG 351 (598)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~ 351 (598)
+. -+..-..|+--|.+.++..+|..+.+++. |.++.-|-.-.-.+...| ...-|...|+-.-.++
T Consensus 282 ~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 282 KH----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred hh----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 64 23344456667899999999999887765 223333322222233333 3455666666665554
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 352 IRPTV-VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYS 430 (598)
Q Consensus 352 ~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 430 (598)
..-|. ..-..+..++.-..++++.+..++.+...-...|...+ .+..+.+..|++.+|+++|-.+....++.+..-..
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s 432 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKS 432 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHH
Confidence 44333 33445666777778899999999888876444344444 57889999999999999999887665553444445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047932 431 CLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIM-IHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRN 509 (598)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 509 (598)
.|.++|.+.++++.|+.++-++-. +.+..+...+ ..-|.+.+.+=-|-+.|+.+... .|++..|.
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe--------- 498 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE--------- 498 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------
Confidence 677899999999999888765532 2233444444 45678899999999999888764 68888774
Q ss_pred CCccccchhHHHHHHHhc
Q 047932 510 NETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 510 g~~~~A~~~~~~~~~~~~ 527 (598)
|+.....- ++..+...
T Consensus 499 GKRGACaG--~f~~l~~~ 514 (557)
T KOG3785|consen 499 GKRGACAG--LFRQLANH 514 (557)
T ss_pred CccchHHH--HHHHHHcC
Confidence 33333344 66666544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-12 Score=111.86 Aligned_cols=230 Identities=13% Similarity=0.025 Sum_probs=186.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhc
Q 047932 290 NTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEV 369 (598)
Q Consensus 290 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (598)
+.+.++|.+.|.+.+|++.|+..... .|-+.||..|...|.+..++..|+.++.+-.+.- +-|+....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778899999999999999888877 5677788888899999999999999998887762 22444445566777888
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047932 370 HQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELF 449 (598)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (598)
++.++|.++|+...+.. +.+......+...|.-.++++-|+.+|+++++.|.. ++..|+.+.-+|...++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 89999999999888764 556666667777788888999999999999988855 8888999999999999999999999
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 450 QSLSRVGLLPN--VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 450 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
++....--.|+ ..+|..+.......|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|+.++|.. +++.+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ars--ll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARS--LLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHH--HHHHhhhh
Confidence 88877533344 4578888888888899999999999888765 5567888888888889999999999 99988744
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.7e-09 Score=97.81 Aligned_cols=444 Identities=13% Similarity=0.079 Sum_probs=256.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc----cHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----RIMEA 124 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~a 124 (598)
..+.|++++|.+...+++...|. +..++..-+.++++.++|++|+.+.+.-.... .-+...|....-. ..++|
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHHcccHHHH
Confidence 34789999999999999999877 78888888889999999999997776543210 1111112211111 78888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH--hHHHHHHHHHHhcCCHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT--VTYNTIIDGVCKEGFVDKAME 202 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~ 202 (598)
+..++-... .|..+...-...+.+.|++++|+.+|+.+.+.+ .++. ..-..++.+-. .-.+ +
T Consensus 99 lk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-------~dd~d~~~r~nl~a~~a----~l~~-~ 162 (652)
T KOG2376|consen 99 LKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-------SDDQDEERRANLLAVAA----ALQV-Q 162 (652)
T ss_pred HHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHH----hhhH-H
Confidence 888873321 234466777888999999999999999998776 2222 22222222111 1111 1
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC------CHh-hHHHHHHHHHhCCCHH
Q 047932 203 LFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG-------VHP------NVV-TFSVIVDELCKNGKME 268 (598)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~------~~~-~~~~l~~~~~~~g~~~ 268 (598)
+.+..... ...+-..+......++..|++.+|+++++...+.+ -.- ... .-..+.-.+...|+..
T Consensus 163 ~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 22222221 11122233345566788999999999999883321 110 111 1223455667899999
Q ss_pred HHHHHHHHHHhcCCCcCHHHH----HHHHHHHHhcCCHH-HHHHHHHHHHHCCC----------CCChhhH-HHHHHHHH
Q 047932 269 EASRLLDLMIQIGVHPNTFVY----NTLMDGFCLTGRVN-HAKELFVSMESNGC----------MHDVVSY-TTLINGYC 332 (598)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~g~~~-~a~~~~~~~~~~~~----------~~~~~~~-~~l~~~~~ 332 (598)
+|..++...++... +|.... |.++..-....=++ .++..++....... .-..... +.++..|
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999988753 344322 22222111111111 12222221111000 0011111 1222222
Q ss_pred hcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 047932 333 KTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF--EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEA 410 (598)
Q Consensus 333 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 410 (598)
.+..+.+.++....... .|.. .+..++..+. +...+..+..++...-+........+....+......|+++.|
T Consensus 320 -tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred -hhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 34445555555444332 2332 3333433322 2224677777777776654333455666777788889999999
Q ss_pred HHHHH--------HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCC
Q 047932 411 LELFC--------AIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV--GLLPN----VVTYNIMIHGLCNDGQ 476 (598)
Q Consensus 411 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~ 476 (598)
..++. .+.+.+.. +.+...+...+.+.++-+.|..++.+.... .-.+. ..++..++..-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99988 55544433 344556677777777766676666665431 00111 2234444445557899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHH
Q 047932 477 MDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQM 524 (598)
Q Consensus 477 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (598)
.++|..+++++.+.+ ++|..+...++.+|++.. ++.|.. +-+.+
T Consensus 474 ~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~--l~k~L 517 (652)
T KOG2376|consen 474 EEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAES--LSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHH--HhhcC
Confidence 999999999999865 788888888888887653 555555 44443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-09 Score=100.01 Aligned_cols=423 Identities=13% Similarity=0.084 Sum_probs=219.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
..++|...++..+.++...|.+++..+.. +-.+...|+-++|.+..+..+...+
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmk--GL~L~~lg~~~ea~~~vr~glr~d~------------------------ 72 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMK--GLTLNCLGKKEEAYELVRLGLRNDL------------------------ 72 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhc--cchhhcccchHHHHHHHHHHhccCc------------------------
Confidence 35667777777777777777644433333 3334455777777777776665422
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+.+.|..++-.+....++++|+..|..+...+ +.|...|.-+.-.-.+.++++........+.+.
T Consensus 73 -------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 73 -------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred -------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 234455555555555666666666666666554 445555555555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHH------HHHHHhCCCHHHHHHHHHHHHhcCCC
Q 047932 211 NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG-VHPNVVTFSVI------VDELCKNGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 211 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (598)
. +-....|..++.++.-.|+...|..+++...+.. -.|+...+... .......|..++|++.+..-... +.
T Consensus 139 ~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~ 216 (700)
T KOG1156|consen 139 R-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV 216 (700)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH
Confidence 1 1133455555666666666666666666655542 12333333221 12334455556565555443322 11
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-HHHHHHhcCCHHHHH-HHHHHHccCCCCCCHHHHHH
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTT-LINGYCKTKNVEEAL-NLYRKMLPKGIRPTVVTYST 361 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~ 361 (598)
.....-..-...+.+.++.++|..++..+.... ||...|.. +..++.+-.+.-++. .+|....+. .|....-..
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~R 292 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRR 292 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccccchh
Confidence 111122233445566666666666666666652 33333333 333332222223333 444444332 111111111
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH---HH-HHHHHHHHhhC----------CCCCCH
Q 047932 362 LFLGLFE-VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV---LE-ALELFCAIGNS----------KYELDI 426 (598)
Q Consensus 362 l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~-A~~~~~~~~~~----------~~~~~~ 426 (598)
+-..... .+-.+....++..+.+.|+++- +..+...|-.-... ++ +..+...+... .-+|..
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 1111111 1222333344455555554432 22222222111100 00 11111111111 014454
Q ss_pred HHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 427 ISY--SCLIDGLCKIGKLETAWELFQSLSRVGLLPNV-VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 427 ~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
..| -.++..+-..|+++.|...++....+ .|+. ..|..-.+.+.+.|++++|..++++..+.+ .+|...-..-+
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcA 446 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHH
Confidence 433 45677788888899998888888874 5663 455555677888889999999988888776 55655555666
Q ss_pred HHHHhcCCccccchhHHHHHHHhc
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
.-..++++.++|.+ +.....+.
T Consensus 447 KYmLrAn~i~eA~~--~~skFTr~ 468 (700)
T KOG1156|consen 447 KYMLRANEIEEAEE--VLSKFTRE 468 (700)
T ss_pred HHHHHccccHHHHH--HHHHhhhc
Confidence 77778888888888 88887766
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-09 Score=100.05 Aligned_cols=413 Identities=12% Similarity=0.074 Sum_probs=225.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047932 146 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHC 225 (598)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (598)
=++.+.+.|++++|.+...++...+ +.+...+..-+-++.+.++|++|+.+.+.-... ..+...+..-+.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYC 88 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHH
Confidence 3566778899999999999998864 566777888888889999999999666543321 1111111222444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHH
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP-NTFVYNTLMDGFCLTGRVN 303 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~ 303 (598)
..+.+..++|+..++ |..+ +..+...-...+.+.|++++|+++|+.+.+.+... +...-..++..- -.-
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AAL 159 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----Hhh
Confidence 567899999999887 2233 33466667778889999999999999987654321 011111111000 000
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHcc--------CCCC-CCHH-----HHHHHHHHH
Q 047932 304 HAKELFVSMESNGCMHDVVSYTTL---INGYCKTKNVEEALNLYRKMLP--------KGIR-PTVV-----TYSTLFLGL 366 (598)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~--------~~~~-~~~~-----~~~~l~~~~ 366 (598)
.+. +.+.... .| ..+|..+ ...+...|++.+|+++++.... .... -+.. .-..+.-.+
T Consensus 160 ~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 160 QVQ-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hHH-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 000 1111110 11 1122222 2223344555555555554411 0000 0000 001122223
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHH----HHHHHHH-------------------------------------------
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTY----IYNTFID------------------------------------------- 399 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~------------------------------------------- 399 (598)
...|+.++|..++...++.. ++|.. .-|.++.
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444433 11211 1111110
Q ss_pred --HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047932 400 --GLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC--KIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG 475 (598)
Q Consensus 400 --~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (598)
.....+..+.+.++...... ..|. ..+..++..+. +...+..+.+++....+....-...+...++......|
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 00111222222222222211 1222 23333333322 22247778888888776532222445556677778999
Q ss_pred CHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCC--CC--hHHHHH--
Q 047932 476 QMDKAHDLFL--------DMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQ--PK--TLICSI-- 541 (598)
Q Consensus 476 ~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--p~--~~~~~~-- 541 (598)
+++.|++++. .+.+.+. .+.+...+...+.+.++.+.|.. ++.+++..+..... +. ...+.+
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~--vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASA--VLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHH--HHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 9999999999 4444333 44556667777888888888888 88877654321111 11 111111
Q ss_pred HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCCCCccchhhhee
Q 047932 542 SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLDQDELAYVIT 589 (598)
Q Consensus 542 ~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 589 (598)
+-..+|+.++|...++.+++.+|++...+..|+..+...+.+.+.++-
T Consensus 467 f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~ 514 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLS 514 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHh
Confidence 334569999999999999999999999999998888877777765543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-11 Score=106.02 Aligned_cols=227 Identities=15% Similarity=0.092 Sum_probs=102.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG 300 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 300 (598)
.+.++|.+.|.+.+|.+.++..++. .|-+.||..|.+.|.+..+...|+.++.+-++. ++.|+....-+.+.+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3445555555555555555554443 333444444555555555555555555554443 2223333333444444455
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 301 RVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFD 380 (598)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 380 (598)
+.++|.++|+...+.. +.++.....+...|.-.++++-|+..++++.+.|+. +...|+.+.-+|.-.+++|-++..|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 5555555555544432 223334444444444445555555555555554443 44445555555555555555554444
Q ss_pred HHhhCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 381 EMQHNDVAAD--TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 381 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
++...-..|+ ..+|..+.......|++..|.+.|+-.+..+ ..+...++.|...-.+.|++++|..+++...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 4443322121 2233333333444444444444444444332 2233344444444444444444444444433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-10 Score=116.24 Aligned_cols=217 Identities=14% Similarity=0.062 Sum_probs=137.4
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---------cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHH
Q 047932 120 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR---------TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDG 190 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 190 (598)
..++|+..|++..+.++. +...|..+..+|.. .+++++|...++++.+.+ |.+...+..+...
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~~ 347 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHH
Confidence 466888888888876422 34455555554442 234677888888877765 5567777777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHH
Q 047932 191 VCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEA 270 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 270 (598)
+...|++++|...|+++.+.+. .+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHH
Confidence 7778888888888888777642 25566777777778888888888888887775322 222233344445567777777
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHcc
Q 047932 271 SRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 349 (598)
...++++.....+.+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..| ++|...++.+.+
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 7777777654322234455666667777777777777777765442 223334444555555555 356665555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-09 Score=104.44 Aligned_cols=284 Identities=12% Similarity=0.077 Sum_probs=199.7
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc--------
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-------- 119 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-------- 119 (598)
++...|++++|++.++.....-.+ ........+..+.+.|+.++|...|+.+++. .|+...|...+..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~D--k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILD--KLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 345789999999999887665543 5667778899999999999999999999988 5777766544432
Q ss_pred ---cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC
Q 047932 120 ---RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHT-IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG 195 (598)
Q Consensus 120 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 195 (598)
..+....+|+++...- |...+...+.-.+..-..+ ..+...+..+.+.| + +.+|+.|-..|....
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------v---PslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG------V---PSLFSNLKPLYKDPE 157 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC------C---chHHHHHHHHHcChh
Confidence 3466677777776653 3333322222222221222 23445556666666 2 456666767776555
Q ss_pred CHHHHHHHHHHHhhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHH
Q 047932 196 FVDKAMELFLQMKDE----N----------INPNV--VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTFSVIV 258 (598)
Q Consensus 196 ~~~~A~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 258 (598)
...-..+++...... + -+|+. .++..+...|...|++++|++.+++.++. .|+ +..|..-.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Ka 235 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 555555666655432 1 12333 34566678888999999999999999987 444 66888889
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh------H--HHHHHH
Q 047932 259 DELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVS------Y--TTLING 330 (598)
Q Consensus 259 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~l~~~ 330 (598)
+.+-+.|++.+|.+.++.....+.. |...-+-.+..+.+.|++++|.+++....+.+..|.... | .....+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987644 777777788889999999999999999887764332211 1 334678
Q ss_pred HHhcCCHHHHHHHHHHHcc
Q 047932 331 YCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 331 ~~~~~~~~~A~~~~~~~~~ 349 (598)
|.+.|++..|++.|..+..
T Consensus 315 ~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 8899999988887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-10 Score=103.88 Aligned_cols=199 Identities=15% Similarity=0.096 Sum_probs=119.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|.+.+++...... .+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHH
Confidence 4456666777777777777777777776654 34456666677777777777777777777666532 245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVH-PNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
..+...+...|++++|.+.+++....... .....+..+..++...|++++|...+++..+.. +.+...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 66666677777777777777776653211 123344555566666666666666666666543 2234455555566666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 299 TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
.|++++|...+++.... .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666665554 23344444455555555666666665555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-09 Score=102.20 Aligned_cols=126 Identities=17% Similarity=0.034 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 047932 396 TFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCND 474 (598)
Q Consensus 396 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 474 (598)
.....+.+.+..++|...+.+..+.. +.....|......+...|..++|.+.|...... .|+ +....++..++.+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHh
Confidence 34444455555555555555444332 233444444445555555555555555555442 233 33445555555555
Q ss_pred CCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 475 GQMDKAHD--LFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 475 g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
|+...|.. ++..+++.+ +-+...|..+...+.+.|+.++|.. .|....+.
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aae--cf~aa~qL 783 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAE--CFQAALQL 783 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHH--HHHHHHhh
Confidence 55544444 555555544 4455555555555555555555555 55555444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-10 Score=101.61 Aligned_cols=196 Identities=14% Similarity=0.057 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (598)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++....... +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 33444444444455555555554444332 223334444444444455555555555444443221 2333444444444
Q ss_pred hcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDV-AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAW 446 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 446 (598)
..|++++|...+.++..... +.....+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 44555555554444443211 1122233334444445555555555555444332 223334444445555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 447 ELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
..+++..+. .+.+...+..++..+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555554443 1223333334444444455555555544444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-08 Score=86.76 Aligned_cols=314 Identities=14% Similarity=0.039 Sum_probs=220.1
Q ss_pred CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 212 INPNVVTYNSLIHCF--SHADDWNEAKRLFIKMMDQ-GVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 212 ~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
++|...+....+.++ +..++-..+...+-.+... -++-|......+..++...|+.++|+..|+.....+.- +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 344444444444443 3334444444444433322 25567778888899999999999999999988765311 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
.....-.+.+.|+.+....+...+.... ......|..-+.......+++.|+.+-++.++.+.. +...+..-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHh
Confidence 3444455667888888888877776542 123444544455556678899999999988876443 55666666677888
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHH-HcCCHHHHH
Q 047932 369 VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLI-DGLC-KIGKLETAW 446 (598)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~ 446 (598)
.+++++|.-.|+.+.... |.+..+|..+++.|...|.+.+|...-+...+. ++.+..+...+. ..+. ...--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999888763 557889999999999999999998877766643 234555555442 2222 233457899
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 447 ELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 447 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
+++++... +.|+ ....+.+...|...|..+.++.++++.+.. .||....+.|...+...+.+++|.. .|..+.
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~--~y~~AL 498 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAME--YYYKAL 498 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHH--HHHHHH
Confidence 99988877 4666 345677788888999999999999998873 6888888999999999999999999 999998
Q ss_pred hcccCCCCCChHHHHH
Q 047932 526 SCWSMCFQPKTLICSI 541 (598)
Q Consensus 526 ~~~~~~~~p~~~~~~~ 541 (598)
+ +.|.+....-
T Consensus 499 r-----~dP~~~~sl~ 509 (564)
T KOG1174|consen 499 R-----QDPKSKRTLR 509 (564)
T ss_pred h-----cCccchHHHH
Confidence 4 4777654443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-09 Score=108.58 Aligned_cols=272 Identities=14% Similarity=0.157 Sum_probs=153.5
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 127 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQ 206 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 206 (598)
++..+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.... .+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks------Lpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS------LPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc------ccccchhHHHHHhcccccccccCCC-----
Confidence 4556677789999999999999999999999998 999888877 6778889999999988888877655
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCcC
Q 047932 207 MKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI-GVHPN 285 (598)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~ 285 (598)
.|...+|..|..+|...||... .+..++ -...+...+...|.-..-..++..+.-. +.-||
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 5788999999999999999766 222222 1112233333444333333333322111 11222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 047932 286 TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTK-NVEEALNLYRKMLPKGIRPTVVTYSTLFL 364 (598)
Q Consensus 286 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 364 (598)
.. ..+......|-++.+.+++..+...... . ....+++-+.... .+++-..+-....+ .|++.+|..++.
T Consensus 142 a~---n~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~ 212 (1088)
T KOG4318|consen 142 AE---NAILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLK 212 (1088)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHH
Confidence 21 1222233344455555554443322100 0 0000122222111 12222222222222 355666666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 047932 365 GLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIG 440 (598)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 440 (598)
+-...|+.+.|..++.+|.+.|++.+...|..++-+ .++..-++.+++.|...|+.|+..|+...+..+...|
T Consensus 213 ~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 213 RALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 666666666666666666666655555544444433 4555555556666666666666666655555554433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-10 Score=112.98 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=54.7
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047932 388 AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIM 467 (598)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 467 (598)
.+++.++.+.+.+-...|+.+.|..++.+|.+.|++.+.+-|..|+-+ .++...+..+++.|.+.|+.|+..|+.-.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 456666666666666667777777777777666666666655555544 55666666666666666666666666666
Q ss_pred HHHHHhcCC
Q 047932 468 IHGLCNDGQ 476 (598)
Q Consensus 468 ~~~~~~~g~ 476 (598)
+..+...|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 555555333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-08 Score=100.16 Aligned_cols=294 Identities=16% Similarity=0.107 Sum_probs=208.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC--
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN-- 264 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 264 (598)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345667899999999999886654 44456677788899999999999999999999985 23444555555554222
Q ss_pred ---CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047932 265 ---GKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRV-NHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEA 340 (598)
Q Consensus 265 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 340 (598)
.+.+....+++++...- |.......+.-.+....++ ..+...+..+...|+|+ +|+.+-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 25677888888887653 3333333332222221223 34566677778887543 456666666655555555
Q ss_pred HHHHHHHccC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc
Q 047932 341 LNLYRKMLPK----G----------IRPTV--VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN 404 (598)
Q Consensus 341 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 404 (598)
.+++...... + -.|.. .++..+.+.|...|++++|+.+.++.+++. |..+..|..-...+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555554321 1 12333 344666788889999999999999999984 44588899999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCC
Q 047932 405 GFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV------TY--NIMIHGLCNDGQ 476 (598)
Q Consensus 405 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~ 476 (598)
|++.+|...++.+...+. -|...-+-.+..+.+.|++++|.+++....+.+..|-.. .| ...+.+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998763 488888888999999999999999999998765433221 22 334677889999
Q ss_pred HHHHHHHHHHHHH
Q 047932 477 MDKAHDLFLDMEA 489 (598)
Q Consensus 477 ~~~A~~~~~~~~~ 489 (598)
+..|++.|....+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-09 Score=98.49 Aligned_cols=395 Identities=13% Similarity=0.123 Sum_probs=230.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN-VVTYNSLIHC 225 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 225 (598)
..+.+..|+++.|+.+|-+..... ++|.+.|..-..+|...|++++|++=-.+-.+. .|+ ...|.-...+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa 79 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAA 79 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHH
Confidence 456678899999999999998876 678899999999999999999998877666664 454 4478888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHH---HHHHHHHHHhcC---CCcCHHHHHHHHHHHHhc
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEE---ASRLLDLMIQIG---VHPNTFVYNTLMDGFCLT 299 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~ 299 (598)
+.-.|++++|+..|.+-++.. +.+...++.+..++.......+ .-.++..+.... .......|..++..+-+.
T Consensus 80 ~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 80 LFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred HHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 999999999999999988763 3345566666666511100000 000111110000 000011122222111100
Q ss_pred -------CCHHHHHHHHHHHHH--------CC-------CCC----------------------ChhhHHHHHHHHHhcC
Q 047932 300 -------GRVNHAKELFVSMES--------NG-------CMH----------------------DVVSYTTLINGYCKTK 335 (598)
Q Consensus 300 -------g~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~l~~~~~~~~ 335 (598)
.+.+...+..-.+.. .+ ..| -......+.+...+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 001111111111000 00 000 0011233455555556
Q ss_pred CHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH-------HHHHHHHHcCCHH
Q 047932 336 NVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYN-------TFIDGLCKNGFVL 408 (598)
Q Consensus 336 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~ 408 (598)
+++.|++-+....... .+..-++....++...|.+..+...-....+.|-. ...-|+ .+..++.+.++++
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 6666666666665543 23334444445556666655555555444443311 111111 2223444455666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 409 EALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNV-VTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 409 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
.|+..|.+.+.....|+. ..+....+++....+...-. .|.. .-...-...+.+.|++..|++.|.++
T Consensus 316 ~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 666666665433222211 11223344444444433322 2222 11222255677899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcC
Q 047932 488 EAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMD 563 (598)
Q Consensus 488 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~ 563 (598)
+.+. |-|...|....-+|.+.|.+..|++ -.+..++. .|+...-+. .+....+++.|...|+.+++.|
T Consensus 385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~--Da~~~ieL-----~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACYLKLGEYPEALK--DAKKCIEL-----DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HhcC-CchhHHHHHHHHHHHHHhhHHHHHH--HHHHHHhc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9986 7788899999999999999999999 88888744 676655444 5566789999999999999999
Q ss_pred ccccchhhHh
Q 047932 564 PDCSCDLESL 573 (598)
Q Consensus 564 P~~~~~~~~l 573 (598)
|++..+.+.+
T Consensus 457 p~~~e~~~~~ 466 (539)
T KOG0548|consen 457 PSNAEAIDGY 466 (539)
T ss_pred chhHHHHHHH
Confidence 9999987776
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-09 Score=89.91 Aligned_cols=194 Identities=15% Similarity=0.088 Sum_probs=125.4
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
+..+++.|++..|.+-++++++.+|. +..+|..++..|.+.|+.+.|.+-|+++++.. |
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p----------------- 100 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA--P----------------- 100 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--C-----------------
Confidence 34456777777777777777777765 66777777777777777777777777776541 2
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
.+..+.|.....+|.+|++++|...|++.....- +..-..+|..+.-+..+.|+++.|...|+
T Consensus 101 ------------~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 101 ------------NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred ------------CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 2445667777777777777777777777665431 22234566666666677777777777777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 206 QMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
+..+.... ...+...+.....+.|++-.|...++.....+. ++....-..++.--..|+.+.+.++=..+..
T Consensus 164 raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 164 RALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77665322 444555666666777777777777776666543 5666666666666666666666655555444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.9e-08 Score=89.98 Aligned_cols=419 Identities=15% Similarity=0.113 Sum_probs=244.5
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
|+..+..|+++.|+..|-.++..+|. +...|..-..+|+..|++++|++=-.+.++. .|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~---------------- 68 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPD---------------- 68 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCc----------------
Confidence 44556899999999999999999886 8899999999999999999998877776654 232
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHH---HH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKA---ME 202 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A---~~ 202 (598)
-...|.....++.-.|++++|+..|.+-++.. +.+...++.+..++.......+. -.
T Consensus 69 -------------w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-------~~n~~L~~gl~~a~~~~~~~~~~~~~p~ 128 (539)
T KOG0548|consen 69 -------------WAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-------PSNKQLKTGLAQAYLEDYAADQLFTKPY 128 (539)
T ss_pred -------------hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-------CchHHHHHhHHHhhhHHHHhhhhccCcH
Confidence 12234444444444444444444444444433 23333344343333100000000 00
Q ss_pred HHHHHhhC---CCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHH-----HHCC-------CCC--------
Q 047932 203 LFLQMKDE---NINPNVVTYNSLIHCF----------SHADDWNEAKRLFIKM-----MDQG-------VHP-------- 249 (598)
Q Consensus 203 ~~~~~~~~---~~~~~~~~~~~l~~~~----------~~~~~~~~a~~~~~~~-----~~~~-------~~~-------- 249 (598)
++..+... ........|..++..+ .....+..+...+... ...+ ..|
T Consensus 129 ~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (539)
T KOG0548|consen 129 FHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGF 208 (539)
T ss_pred HHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCC
Confidence 00000000 0000011111111111 0000011111111000 0000 001
Q ss_pred --------------CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 250 --------------NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 250 --------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
-..-...+.+...+..++..+++.+....... .+..-++....+|...|.+.++........+.
T Consensus 209 ~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 209 PIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred CccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 01123456777778888888998888888764 46666677778888888888887777776665
Q ss_pred CCCCChhhHHH-------HHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 047932 316 GCMHDVVSYTT-------LINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVA 388 (598)
Q Consensus 316 ~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 388 (598)
|.. ....|+. +..+|.+.++++.++..|.+.......|+. ..+....+++........-.+..
T Consensus 287 gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe 356 (539)
T KOG0548|consen 287 GRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPE 356 (539)
T ss_pred hHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChh
Confidence 421 2222322 344666778888899888887665333332 22334455555555444332211
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 047932 389 ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIM 467 (598)
Q Consensus 389 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 467 (598)
. ..-...-...+.+.|++..|+..|.++++.. +-|...|....-+|.+.|.+..|+.-.+...+. .|+ ...|..=
T Consensus 357 ~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RK 432 (539)
T KOG0548|consen 357 K-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRK 432 (539)
T ss_pred H-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHH
Confidence 1 2222233667889999999999999999886 568899999999999999999999998888885 444 4556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCccccchhHHHHHH
Q 047932 468 IHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIF-NTIMLGFIRNNETSKSSRGKLMSQM 524 (598)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (598)
+.++....+|+.|.+.|.+.++.+ |+..-+ ..+.++.........-.+ +.+..
T Consensus 433 g~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~a~~~~~~~ee--~~~r~ 486 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVEAQRGDETPEE--TKRRA 486 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHhhcCCCHHH--HHHhh
Confidence 667777889999999999999865 554444 444444443222333344 45543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-09 Score=101.98 Aligned_cols=244 Identities=18% Similarity=0.177 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--C
Q 047932 252 VTFSVIVDELCKNGKMEEASRLLDLMIQI-----G-VHPNTF-VYNTLMDGFCLTGRVNHAKELFVSMESN-----G--C 317 (598)
Q Consensus 252 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~ 317 (598)
.+...+...|...|+++.|..+++..++. | ..|... ..+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555677777777777777777766553 1 011222 2223445556666666666666655432 1 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 047932 318 MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK-----GI-RPTV-VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAAD 390 (598)
Q Consensus 318 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 390 (598)
+.-..+++.|...|.+.|++++|...+++..+- +. .|.. ..++.++..+...+++++|..+++...+.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i----- 354 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI----- 354 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-----
Confidence 112334445555566666666555555544321 00 0111 12233333444444555544444433221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC--CC-CHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV----GL--LP-NVVT 463 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~ 463 (598)
+..........-..+++.|...|...|++++|.+++++++.. +. .+ ....
T Consensus 355 -----------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 355 -----------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred -----------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 000000000011234555555555666666665555555431 01 11 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CC-CHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEA----KGV-EP-DCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
++.+...|.+.+++.+|.++|.+... .|. .| ...+|..|...|.+.|++++|.+ +.+.+.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~--~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE--LEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH--HHHHHH
Confidence 55555555555555555555554321 110 11 22455556666666666666666 555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-09 Score=102.07 Aligned_cols=237 Identities=18% Similarity=0.136 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHh-hHHHHHHHHHhCCCHHHHHHHHHHHHhc-----C--
Q 047932 216 VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ-----GV-HPNVV-TFSVIVDELCKNGKMEEASRLLDLMIQI-----G-- 281 (598)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-- 281 (598)
..+...+...|...|+++.|+.+++..++. |. .|... ..+.+...|...+++++|..+|++++.. |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666788888888888888888877654 11 23333 3344677888889999988888888764 2
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHccC---C
Q 047932 282 VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN-----GC-MHD-VVSYTTLINGYCKTKNVEEALNLYRKMLPK---G 351 (598)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 351 (598)
.+.-..+++.|..+|.+.|++++|...++...+. +. .+. ...++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1112346777778888999988888877765432 11 112 223556677788889999998888865432 0
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-
Q 047932 352 IRP----TVVTYSTLFLGLFEVHQVEHALKLFDEMQHND-------VAADTYIYNTFIDGLCKNGFVLEALELFCAIGN- 419 (598)
Q Consensus 352 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 419 (598)
+.+ -..+++.+...|...|++++|.++++.++... ..-....++.+...|.+.+.+.+|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 13456666666777777777777766654320 111133445555555555555555555554321
Q ss_pred ---C--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047932 420 ---S--KYELDIISYSCLIDGLCKIGKLETAWELFQSL 452 (598)
Q Consensus 420 ---~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 452 (598)
. +.+-...+|..|+..|...|+++.|+++.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 11112334555555555555555555555444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.8e-09 Score=86.01 Aligned_cols=199 Identities=14% Similarity=0.004 Sum_probs=133.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
+..-|.-.|...|++..|..-+++.++.+ |.+..+|..+...|-+.|..+.|.+.|+...+.... +..+.|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-------PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhh
Confidence 34556667777777777777777777765 455667777777777777777777777777765333 5667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG 300 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 300 (598)
....+|..|.+++|...|++......-+ -..+|..+.-+..+.|+++.|..+|++.++.... ...+...+.....+.|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcc
Confidence 7777777777777777777776642222 2346666777777777777777777777766422 3445566666677777
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 301 RVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
++-.|...++.....+. ++..+.-..|+.-...|+.+.+.+.=..+...
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777666553 56666666666666667666666555555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-08 Score=95.28 Aligned_cols=223 Identities=14% Similarity=0.013 Sum_probs=149.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSP--PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAA 126 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~ 126 (598)
+...+..+.++..+.+++...+.. ..+..|..++..+...|++++|+..|+++++. .|
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P------------------ 95 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RP------------------ 95 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CC------------------
Confidence 345567788888888888644421 23566888888888899999998888888764 22
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 127 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQ 206 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 206 (598)
.+...|+.+...+...|++++|...|++..+.+ +.+..+|..+...+...|++++|.+.|+.
T Consensus 96 -----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 96 -----------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred -----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 356788888889999999999999999988865 44577888888888889999999999988
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc---CC-
Q 047932 207 MKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI---GV- 282 (598)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~- 282 (598)
..... |+..........+...++.++|...|.+..... .++...+ .......|+...+ +.+..+.+. ..
T Consensus 158 al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~ 230 (296)
T PRK11189 158 FYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTE 230 (296)
T ss_pred HHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHH
Confidence 88753 332222222233445678888988887655432 2232221 2223345555443 244444321 10
Q ss_pred --CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 283 --HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 283 --~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
+.....|..+...+...|++++|...|++..+.+
T Consensus 231 l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 231 LAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1123467777777777788888888887777664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-08 Score=100.97 Aligned_cols=501 Identities=13% Similarity=0.039 Sum_probs=281.8
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHhc-----
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINC----- 119 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~----- 119 (598)
|..+....|...|.+.|+.+-+.++. +..++......|++..+++.|..+.-...+. .|-. ..++-.-.+
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccC
Confidence 44444455677888889888888776 8888888889999888988888874333221 1111 111111122
Q ss_pred --cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH
Q 047932 120 --RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV 197 (598)
Q Consensus 120 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 197 (598)
+...|+..|+...+.++ .|...|..++.+|.+.|++..|.++|.++.... |.+...-.-.....+..|.+
T Consensus 575 a~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------P~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------PLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------cHhHHHHHHHHHHHHHhhhH
Confidence 77788888888887653 378889999999999999999999999887754 22333333344556778999
Q ss_pred HHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHCCCCCCHhhHHHHHHHHH--
Q 047932 198 DKAMELFLQMKDE------NINPNVVTYNSLIHCFSHADDWNEAKRLFIK-------MMDQGVHPNVVTFSVIVDELC-- 262 (598)
Q Consensus 198 ~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~-- 262 (598)
.+|+..+...... +..--..++..+...+...|-..++.+.+++ .+......+...|..+..+|.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 9999888877542 1111222333333333333333333333333 332221222222322222211
Q ss_pred -hCC--CHH-HHHHHH-HHHHhcCC--------------------CcCHHHHHHHHHHHHh----cC----CHHHHHHHH
Q 047932 263 -KNG--KME-EASRLL-DLMIQIGV--------------------HPNTFVYNTLMDGFCL----TG----RVNHAKELF 309 (598)
Q Consensus 263 -~~g--~~~-~a~~~~-~~~~~~~~--------------------~~~~~~~~~ll~~~~~----~g----~~~~a~~~~ 309 (598)
... -+. ....++ .+....+. ..+...|..++..|.+ .| +...|...+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 110 000 000011 11111111 1123334444433332 22 223566666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 047932 310 VSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA 389 (598)
Q Consensus 310 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 389 (598)
....+.. ..+..+|+.|.-. ...|++.-|...|-+-..... ....+|..+...+....+++.|...|....... |.
T Consensus 807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~ 882 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PL 882 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHHhhhhcC-ch
Confidence 6665542 3366667776655 555677777766666555433 256777777778888889999999998888764 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH--Hh--hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------CC
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCA--IG--NSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR---------VG 456 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~ 456 (598)
+...|..........|+.-++..+|.. .. ..|--++..-|.+........|+.++-+...+.+.. .+
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 555665555555677888888877765 22 223334444444444445556665555444443322 12
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCccccchhHHHHHHHhcccCC
Q 047932 457 LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK-GVEPDCVIFN----TIMLGFIRNNETSKSSRGKLMSQMSSCWSMC 531 (598)
Q Consensus 457 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 531 (598)
.+.....|...+...-+.+.+..|.+...++... ..+-+...|+ ...+.++..|.++.|.. -+..... .
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~--a~~~~~~----e 1036 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK--ASWKEWM----E 1036 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh--hhcccch----h
Confidence 3334566666666666777777777766665421 0122333333 34455667777776655 3322211 1
Q ss_pred CCCChHHHHHHHHHhCCCCCChhhHHHhhhcCccccc
Q 047932 532 FQPKTLICSISIMLQKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 532 ~~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
...|..-........++++++...|++++.+.-++++
T Consensus 1037 vdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred HHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccc
Confidence 1112222222335578888899999999988887777
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-08 Score=92.93 Aligned_cols=217 Identities=13% Similarity=0.022 Sum_probs=142.2
Q ss_pred cHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC
Q 047932 120 RIMEAAALFTKLRVFG---CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF 196 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 196 (598)
..+.++.-+.+++... .......|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCCC
Confidence 3455555555555421 11124567788888889999999999999988876 5668889999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047932 197 VDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDL 276 (598)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 276 (598)
+++|.+.|+...+.... +..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...+..
T Consensus 114 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999998875332 56678888888888999999999999888753 3332222222234456788888888876
Q ss_pred HHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 277 MIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN---GC---MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 277 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
..... .++... .. ......|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|+..|++....
T Consensus 191 ~~~~~-~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55432 222221 12 223335555443 244443321 00 113346777777777888888888888877765
Q ss_pred C
Q 047932 351 G 351 (598)
Q Consensus 351 ~ 351 (598)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5e-07 Score=80.29 Aligned_cols=303 Identities=11% Similarity=0.063 Sum_probs=172.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
++.-..-+...+...|++..|+..|...+..+ +.+-.++..-...|...|+..-|+.=+..+++. +||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH
Confidence 34445556777777788888888888777654 333444555556777777777777777777763 555432
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hh------------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 047932 219 Y-NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV--VT------------FSVIVDELCKNGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 219 ~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (598)
- ..-...+.+.|.+++|..=|+.+++.....+. .. ....+..+...|+...++..+..+++.. +
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 2 22344567778888888888777765321110 01 1123344555667777777777776653 3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHH----H
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVT----Y 359 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~ 359 (598)
-|...+..-..+|...|++..|+.-++...+.. ..+...+--+...+...|+.+.++...++..+. .||... |
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH
Confidence 366666666677777777777766666655442 224444555556666677777777777666654 233321 1
Q ss_pred HHH---------HHHHHhcCCHHHHHHHHHHHhhCCCCcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 360 STL---------FLGLFEVHQVEHALKLFDEMQHNDVAADTY---IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDII 427 (598)
Q Consensus 360 ~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 427 (598)
..+ +......+++.+++.-.+...+........ .+..+-.++...|++.+|++...++++.. +.|+.
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHH
Confidence 111 111223455555555555555543221111 22233344455566666666666666542 22356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRV 455 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (598)
++..-..+|.....++.|+.-|+...+.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6666666666666666666666666653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-07 Score=91.61 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=65.1
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH---HHHhc--
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS---ILINC-- 119 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~ll~~-- 119 (598)
.|-.++..++..+|...|+.+++.+|. +...|..++.+|.+.|.+..|.+.|.++... .|+..... ..+.+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPk--D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPK--DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCch--hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHh
Confidence 344567899999999999999999987 9999999999999999999999999998865 45433221 22222
Q ss_pred -cHHHHHHHHHHHH
Q 047932 120 -RIMEAAALFTKLR 132 (598)
Q Consensus 120 -~~~~a~~~~~~~~ 132 (598)
.+.+|+..+..+.
T Consensus 644 GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 644 GKYKEALDALGLII 657 (1238)
T ss_pred hhHHHHHHHHHHHH
Confidence 6666766666554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.8e-11 Score=76.44 Aligned_cols=49 Identities=49% Similarity=0.864 Sum_probs=33.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 179 PDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFS 227 (598)
Q Consensus 179 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (598)
||..+|+++|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=75.14 Aligned_cols=49 Identities=39% Similarity=0.877 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 459 PNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
||..+||.++.+|++.|++++|.++|++|.+.|++||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-08 Score=82.92 Aligned_cols=183 Identities=14% Similarity=0.161 Sum_probs=130.8
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHh-----c-cHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN-----C-RIM 122 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~-----~-~~~ 122 (598)
+++..++.+|++++..-.+..|. +......+...|....++..|.++|+++-.. .|....|...-. + .+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 34667789999999988888775 7788889999999999999999999999865 566555543322 2 777
Q ss_pred HHHHHHHHHHHcCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVF--TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKA 200 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 200 (598)
+|+++...|... +... +...-..+....+++..+..+.++....+ +..+.+.......+.|+++.|
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeeccccHHHH
Confidence 888887777532 2221 11122233446788888888888776433 355556666677789999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 201 MELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH 248 (598)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (598)
.+-|+...+-+--.....|+ +.-+..+.++++.|++...+++++|++
T Consensus 164 vqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 99999888763333455666 444566788999999999999888764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-07 Score=83.60 Aligned_cols=197 Identities=9% Similarity=-0.001 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHH-HHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVY-NTLMDGF 296 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~ 296 (598)
-..-+...+...|++..|+..|....+.+ +.+..++..-...|...|+...|+.-+...++. +||-..- ..-...+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 33345555666666777777766666541 112223333445666667766666666666653 4443221 1222445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh--hh------------HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 297 CLTGRVNHAKELFVSMESNGCMHDV--VS------------YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
.+.|+++.|..-|+.++........ .. ....+..+...|+...|+.....+++.. +-|...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 6667777777777766665311100 00 1112222334455555555555555432 1244444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGN 419 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 419 (598)
..+|...|++..|+.-++.+.+.. ..++..+..+-..+...|+.+.++...++-++
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 455555555555555444444432 22333444444444555555555555555444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.8e-07 Score=86.24 Aligned_cols=306 Identities=12% Similarity=-0.000 Sum_probs=174.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI-NPNV-VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVI 257 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (598)
....|..+...+...|+.+.+.+.+........ ..+. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 456677777777778888887777766654321 1122 222233445677899999999999888762 334434432
Q ss_pred HHHHHh----CCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047932 258 VDELCK----NGKMEEASRLLDLMIQIGVHPN-TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYC 332 (598)
Q Consensus 258 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 332 (598)
...+.. .+....+.+.+... ....|+ ......+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 222222 34455555555441 112233 3344456677888899999999999988875 445667778888888
Q ss_pred hcCCHHHHHHHHHHHccCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcCHHHH-H--HHHHHHHHcC
Q 047932 333 KTKNVEEALNLYRKMLPKGIR-PTV--VTYSTLFLGLFEVHQVEHALKLFDEMQHNDV-AADTYIY-N--TFIDGLCKNG 405 (598)
Q Consensus 333 ~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g 405 (598)
..|++++|...+.+....... ++. ..|..+...+...|++++|..+++++..... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 899999999998887765321 222 3455677778888999999999888764322 1112111 1 2222233334
Q ss_pred CHHHHHHH---HHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHh
Q 047932 406 FVLEALEL---FCAIGNS-KYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLP--N------VVTYNIMIHGLCN 473 (598)
Q Consensus 406 ~~~~A~~~---~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~ 473 (598)
....+..+ ....... ............+.++...|+.+.|..+++.+....... . .........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 32222222 1111111 001112222345666677778888888887765521110 0 1111122233457
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047932 474 DGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~ 490 (598)
.|++++|.+.+...+..
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77888888777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.5e-07 Score=86.28 Aligned_cols=165 Identities=17% Similarity=0.143 Sum_probs=85.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
+.+......|.+|+.+++.+..... ...-|..+...|+..|+++.|.++|.+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344455566666666666655422 23335556666666666666666665432 233445566666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
+.|.++-.+.. +.......|..-..-+-.+|++.+|.++|-.+. .|+. -|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 66666655443 223334445555555556666666666554332 1331 244455556555555555433
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 488 EAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 488 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
.-. .-..|-..+..-|...|+...|..
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHH
Confidence 211 112344444455555555555555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-07 Score=86.86 Aligned_cols=305 Identities=12% Similarity=0.052 Sum_probs=189.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD-TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
...|..+...+...|+.+.+...+....+... ...+ ..........+...|++++|.+.+++..+.. +.+...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-----ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLA 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHH
Confidence 34566777777788888888877777766541 1112 1223333456678899999999999988763 234444
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 047932 219 YNSLIHCFSH----ADDWNEAKRLFIKMMDQGVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLM 293 (598)
Q Consensus 219 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 293 (598)
+.. ...+.. .+..+.+.+.+... ....|+ ......+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la 155 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVA 155 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 442 222322 34555555555441 112233 3344556678889999999999999999875 33567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHccCCC-CCCHHHH-H--HHHHHH
Q 047932 294 DGFCLTGRVNHAKELFVSMESNGCM-HDV--VSYTTLINGYCKTKNVEEALNLYRKMLPKGI-RPTVVTY-S--TLFLGL 366 (598)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~ 366 (598)
..+...|++++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... . .++..+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 9999999999999999998875321 222 3455788889999999999999999864432 1122111 1 223333
Q ss_pred HhcCCHHHHHHH--H-HHHhhCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--------CCHHHHHHHHH
Q 047932 367 FEVHQVEHALKL--F-DEMQHND-VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE--------LDIISYSCLID 434 (598)
Q Consensus 367 ~~~~~~~~a~~~--~-~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~ 434 (598)
...|....+..+ + ....... .............++...|+.+.|...++.+...... ...........
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 334433333322 1 2111110 0111222235666778899999999999887643211 01222333444
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 047932 435 GLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~ 454 (598)
++...|+.++|.+.+.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 316 YAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56689999999999988765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-06 Score=80.91 Aligned_cols=221 Identities=14% Similarity=0.179 Sum_probs=136.3
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH------------HhCCCCCCHHhHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRL------------NSTGLFPDLYTHSIL 116 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------~~~~~~p~~~~~~~l 116 (598)
+.-.|+.|.|.+..+.+ .+-..|..|+..+.+.++++-|.-++-.| .+.+- +...--.+
T Consensus 738 yvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAv 808 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAV 808 (1416)
T ss_pred EEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHH
Confidence 46789999999988877 26678999999999888877666555433 33221 11111222
Q ss_pred Hhc---cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh
Q 047932 117 INC---RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK 193 (598)
Q Consensus 117 l~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 193 (598)
+.. .+++|..+|++-.+. ..|-..|-..|.+++|.++-+.=.+.. -..||......+-.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEA 870 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHh
Confidence 222 889999999887753 345566778899999998876543322 14566667777777
Q ss_pred cCCHHHHHHHHHHHh----------hCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 047932 194 EGFVDKAMELFLQMK----------DENI---------NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTF 254 (598)
Q Consensus 194 ~g~~~~A~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (598)
.++.+.|++.|++.- ...+ ..|...|.......-..|+.+.|+.+|..... |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 888888888876532 1110 11334444455555667888888888877654 3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 255 SVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVS 311 (598)
Q Consensus 255 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 311 (598)
-.+++..|-+|+.++|-++-++- | |......+.+.|-..|++.+|...|.+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33445555555555555444331 1 444444455555555555555555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-08 Score=96.50 Aligned_cols=228 Identities=15% Similarity=0.151 Sum_probs=165.9
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+++.|++.+|.-.|+.+...+|. ++.+|..|......+++-..|+..++++++. .|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP-------------------- 350 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLEL--DP-------------------- 350 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CC--------------------
Confidence 46788899999999999988887 8899999999988888888888888888865 33
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCC--CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--DTVTYNTIIDGVCKEGFVDKAMELFLQ 206 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 206 (598)
.+..+...|...|...|.-.+|+..++..+...+.......+ +...-.. ........+....++|-+
T Consensus 351 ---------~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLe 419 (579)
T KOG1125|consen 351 ---------TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLE 419 (579)
T ss_pred ---------ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHH
Confidence 256677788888889999999999999887654211100000 0000000 111122233445555655
Q ss_pred HhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC
Q 047932 207 MKDE-NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN 285 (598)
Q Consensus 207 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 285 (598)
+... +..+|...+..|.-.|.-.|++++|.+.|+..+... +-|..+||.|...++...+..+|+..|.+.++. .|.
T Consensus 420 aa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~ 496 (579)
T KOG1125|consen 420 AARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG 496 (579)
T ss_pred HHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC
Confidence 5443 444788888889889999999999999999988753 335668999999999999999999999999886 343
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 286 -TFVYNTLMDGFCLTGRVNHAKELFVSMES 314 (598)
Q Consensus 286 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 314 (598)
+.+...|.-+|...|.+++|.+.|-..+.
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 45666677788899999999888876654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-07 Score=78.40 Aligned_cols=345 Identities=14% Similarity=0.131 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------cHHHHHHHHHHHHHcCCCCCHhhHHH-HHHHH
Q 047932 78 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------RIMEAAALFTKLRVFGCEPDVFTYNT-LINGL 150 (598)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 150 (598)
+.+++..+.+..++++|++++....++ .|....-.+++.. .+..|...++++... .|...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 444555556666777777777665554 3333333333332 455555555555443 233333332 23444
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHH--HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 047932 151 CRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNT--IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSH 228 (598)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 228 (598)
.+.+.+..|+.+...|.... +...-.. -.......+++..+..++++....| +..+.+.......+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~---------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNP---------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHhcccHHHHHHHHHhcCCH---------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 45555555555555543311 1111111 1112223455555555555554321 33344444444455
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHH----HHHHHHHHhcCCHHH
Q 047932 229 ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVY----NTLMDGFCLTGRVNH 304 (598)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~g~~~~ 304 (598)
.|+++.|.+-|+...+.+--.....|+. .-+..+.|+++.|++...+++++|++..+..- ...+.. ...|+.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt-- 232 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT-- 232 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch--
Confidence 5556666555555554322222333432 23344455555555555555555433111100 000000 000000
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 305 AKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKG-IRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
.. |..+ .-...+|.-...+.+.++++.|.+.+..|.... ...|++|...+.-.- ..+++.....-+.-+.
T Consensus 233 -~~----lh~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 233 -LV----LHQS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL 303 (459)
T ss_pred -HH----HHHH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH
Confidence 00 0000 011223444455678899999999998887542 344667766654332 2344555555555566
Q ss_pred hCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 047932 384 HNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE-LDIISYSCLIDGLC-KIGKLETAWELFQSLS 453 (598)
Q Consensus 384 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 453 (598)
..+ +-...+|..++-.||+..-++-|-+++.+-...... .+...|+ ++.+++ ..-..++|.+-++.+.
T Consensus 304 ~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 304 QQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 554 345678888888899998888888877553322111 1233333 333333 3446677766665544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-06 Score=93.31 Aligned_cols=337 Identities=11% Similarity=0.007 Sum_probs=214.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCH--hhHHHHHHH
Q 047932 189 DGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV------HPNV--VTFSVIVDE 260 (598)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~ 260 (598)
......|+++.+...++.+.......+..........+...|+++++..++......-- .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653221111233334455566788999999999988754311 1111 122233445
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--ChhhHHHHHHHH
Q 047932 261 LCKNGKMEEASRLLDLMIQIGVHPNT----FVYNTLMDGFCLTGRVNHAKELFVSMESNGC---MH--DVVSYTTLINGY 331 (598)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 331 (598)
+...|++++|...++.....-...+. ...+.+...+...|+++.|...+.+.....- .+ ....+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999988763211121 2345566677889999999999988764311 11 123445567778
Q ss_pred HhcCCHHHHHHHHHHHccC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCc--CHHHHHHHHHH
Q 047932 332 CKTKNVEEALNLYRKMLPK----GIR--P-TVVTYSTLFLGLFEVHQVEHALKLFDEMQHND--VAA--DTYIYNTFIDG 400 (598)
Q Consensus 332 ~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~ 400 (598)
...|++++|...+.+.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998876542 211 1 22334455566777899999999998875431 111 23344556677
Q ss_pred HHHcCCHHHHHHHHHHHhhCC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHH
Q 047932 401 LCKNGFVLEALELFCAIGNSK--YELDII--SY--SCLIDGLCKIGKLETAWELFQSLSRVGLLPNV---VTYNIMIHGL 471 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~ 471 (598)
+...|++++|...+..+.... ...... .. ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 888999999999988875321 111111 10 11224455688999999998776542111111 1134566778
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 472 CNDGQMDKAHDLFLDMEAK----GVEPD-CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
...|++++|...++++... |...+ ..+...+..++.+.|+.++|.+ .+.++.+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~--~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR--VLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Confidence 8999999999999988753 32222 2456677788999999999999 99999876
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=94.02 Aligned_cols=146 Identities=17% Similarity=0.131 Sum_probs=66.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK----IGKL 442 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 442 (598)
...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.. .|. +...++.++.. .+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhH
Confidence 3445555555544321 233444444555555555555555555554432 222 22222222221 2245
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc-cccchhHHH
Q 047932 443 ETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNET-SKSSRGKLM 521 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 521 (598)
.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-++.+...++.+....|+. +.+.+ ++
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~--~l 259 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER--YL 259 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH--HH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH--HH
Confidence 5555555555443 33455555555555555566666665555555433 33445555555555555555 33444 55
Q ss_pred HHHH
Q 047932 522 SQMS 525 (598)
Q Consensus 522 ~~~~ 525 (598)
+++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 5554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.8e-06 Score=89.60 Aligned_cols=339 Identities=10% Similarity=-0.018 Sum_probs=210.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------CCC--HHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI------NPN--VVT 218 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~ 218 (598)
...+...|++..+...++.+.... ...+..........+...|+++++..++......-- .+. ...
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~------~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEV------LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHH------HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 334556777777777766552211 111222334445556678899999988887754310 111 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---C--cCHHHH
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV----VTFSVIVDELCKNGKMEEASRLLDLMIQIGV---H--PNTFVY 289 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~ 289 (598)
...+...+...|++++|...++.........+. ...+.+...+...|++++|...+++...... . .....+
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 223345566789999999999988763111121 2345566677889999999999888765311 1 112344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCC--CCC--CHHH
Q 047932 290 NTLMDGFCLTGRVNHAKELFVSMESN----GCMH---DVVSYTTLINGYCKTKNVEEALNLYRKMLPKG--IRP--TVVT 358 (598)
Q Consensus 290 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~ 358 (598)
..+...+...|+++.|...+++.... +... ....+..+...+...|++++|...+.+..... ..+ ....
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 55667788899999999988876542 2111 12234455666777899999999888765421 111 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcCHH--H--HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---HHH
Q 047932 359 YSTLFLGLFEVHQVEHALKLFDEMQHND--VAADTY--I--YNTFIDGLCKNGFVLEALELFCAIGNSKYELDI---ISY 429 (598)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 429 (598)
+..+...+...|+++.|...+..+.... ...... . ....+..+...|+.+.|..++............ ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4445667778999999999988875421 111110 0 011224445678999999988776542211111 123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRV----GLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (598)
..+..++...|++++|...+++.... |...+ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56777788899999999999987652 22222 2456667778889999999999999998764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-07 Score=89.55 Aligned_cols=221 Identities=15% Similarity=0.145 Sum_probs=140.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF 226 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (598)
...+.+.|++.+|.-.|+..++.+ |-+...|..|......+++-..|+..+++..+.... +..+.-.|.-.|
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSy 363 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSY 363 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHH
Confidence 444667788888888888887776 556778888888888888878888888887776433 667777777778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-----------HHHHhCCCHHHHHHHHHHH-HhcCCCcCHHHHHHHHH
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVVTFSVIV-----------DELCKNGKMEEASRLLDLM-IQIGVHPNTFVYNTLMD 294 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~ 294 (598)
...|.-..|.+.++..+....+ |..+. ..+.....+....++|-++ .+.+..+|..+...|.-
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 8888888888888777654211 00000 0111111122333333333 33344456666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCC-HHHHHHHHHHHHhcCCHH
Q 047932 295 GFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT-VVTYSTLFLGLFEVHQVE 373 (598)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 373 (598)
.|.-.|++++|...|+.++... |.|...||.|...++...+..+|+..|+++++. .|+ +.+...|.-+|...|.++
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHH
Confidence 6777777777777777776654 446667777777777777777777777777664 333 234445555666777777
Q ss_pred HHHHHHHHHh
Q 047932 374 HALKLFDEMQ 383 (598)
Q Consensus 374 ~a~~~~~~~~ 383 (598)
+|.+.|-.++
T Consensus 516 EA~~hlL~AL 525 (579)
T KOG1125|consen 516 EAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHH
Confidence 7766665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-05 Score=78.43 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=88.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHH
Q 047932 190 GVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEE 269 (598)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (598)
+......+.+|+.+++.+.... ....-|..+...|...|+++.|.++|.+. ..++..+..|.+.|++..
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3344455555555555554431 12223444555556666666666555332 123344555566666666
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHcc
Q 047932 270 ASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 349 (598)
|.++-.+.. |.......|.+-..-.-..|++.+|+++|-.+.. |+ .-|.+|-+.|..+..+++..+-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 555544432 2233334444444445555555555555433221 12 224455555555555555544332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 350 KGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALEL 413 (598)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 413 (598)
.. -..|-..+..-+...|+...|...|-+..+ |.+-+++|...+.+++|.++
T Consensus 879 d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 879 DH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 11 112333344445555555555555433322 23334444445555554444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.3e-05 Score=72.03 Aligned_cols=152 Identities=12% Similarity=0.121 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL-DIISYSCLIDGLCKIGKLETAWELFQ 450 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (598)
.+....+++++.......-..+|..+++...+..-+..|..+|.++.+.+..+ ++.++++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45555566665543222223455666666677777778888888877665555 5566666666554 467777888877
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 451 SLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDC--VIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 451 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
--+.. +..+...-...+..+.+.++-..|..+|++.+..+++|+. ..|..++.-=..-|+...+.+ +-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~--lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK--LEKRRFTA 501 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH--HHHHHHHh
Confidence 65443 2223344455666677777777888888888777555543 677777777777777777777 66666544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-07 Score=87.53 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=60.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh----cCC
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE----VHQ 371 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 371 (598)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 34445555555444322 133344444455555555555555555554431 12 222222222221 123
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKL-ETAWELFQ 450 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 450 (598)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+ +-++.++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44555555554433 23344444444444445555555555544444332 22333444444444444444 33444444
Q ss_pred HHHh
Q 047932 451 SLSR 454 (598)
Q Consensus 451 ~~~~ 454 (598)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.2e-05 Score=78.73 Aligned_cols=366 Identities=13% Similarity=0.174 Sum_probs=179.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHh-----HHHHHhccHHHHHHHHHHHHHcCCCCCHhhH
Q 047932 70 PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYT-----HSILINCRIMEAAALFTKLRVFGCEPDVFTY 143 (598)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~-----~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (598)
|...+++.-...+.++...+-+.+.++++++..-.. ....... ..+.+.++.....+..+++...+. |
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-~----- 1052 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-P----- 1052 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-h-----
Confidence 334677888888889999999999999999876321 1111111 112222255555555555544321 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCC----------------CCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNG----------------EFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
.+......++-+++|..+|++..-... +|.. --..+..|..+..+-.+.|...+|++-|-+.
T Consensus 1053 -~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe-~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1053 -DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAE-RCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred -hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHH-hhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 233444455555666666655321100 0000 0011334444444444444444444443221
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHH
Q 047932 208 KDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTF 287 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (598)
.|+..|..++....+.|.|++-.+.+....+....|... +.++-+|++.+++.+.+..+ .-|+..
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A 1195 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVA 1195 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCch
Confidence 144445555555555555555555444444433333322 23444455554444433222 123444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (598)
....+..-|...|.++.|.-+|.. +..|..|...+...|++..|.+.-++.. +..+|..+-.+|.
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACV 1260 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHh
Confidence 444444444455555555444432 2235555555555666666555444332 4455665555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWE 447 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 447 (598)
..+.+.-| +|-..++-....-...++..|...|-+++-+.+++..+... +.....|+.|.-.|.+- ++++..+
T Consensus 1261 d~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~E 1333 (1666)
T KOG0985|consen 1261 DKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMME 1333 (1666)
T ss_pred chhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 54444322 22223333445556677888888888888888887766432 33455666666666653 3444444
Q ss_pred HHHHHHh-CCCC------CCHHHHHHHHHHHHhcCCHHHH
Q 047932 448 LFQSLSR-VGLL------PNVVTYNIMIHGLCNDGQMDKA 480 (598)
Q Consensus 448 ~~~~~~~-~~~~------p~~~~~~~l~~~~~~~g~~~~A 480 (598)
.++-.-. .+++ -....|..++-.|.+-..++.|
T Consensus 1334 Hl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1334 HLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3333221 1111 1234566666666655555554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.1e-05 Score=78.86 Aligned_cols=361 Identities=13% Similarity=0.096 Sum_probs=175.0
Q ss_pred CCHHhHHHHHhccHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHH
Q 047932 108 PDLYTHSILINCRIMEAAALFTKLRVFGC--EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYN 185 (598)
Q Consensus 108 p~~~~~~~ll~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (598)
.|...|..++...-.--+.+.++..+-+. ..|.......+.++...+-+.+-+++++++.-.+.. +..+...-|
T Consensus 950 ~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~----Fse~~nLQn 1025 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV----FSENRNLQN 1025 (1666)
T ss_pred cChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc----cccchhhhh
Confidence 45556666665522233445555544322 235556677788888999999999999998865532 223333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------------
Q 047932 186 TIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG------------------- 246 (598)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------- 246 (598)
.|+-...+. +..+..+..+++-.-+. |+ +.......+-+++|..+|++.-..+
T Consensus 1026 LLiLtAika-d~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~ef 1097 (1666)
T KOG0985|consen 1026 LLILTAIKA-DRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEF 1097 (1666)
T ss_pred hHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHH
Confidence 444443333 34455555555543211 11 2233344455555555555431100
Q ss_pred --CCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047932 247 --VHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSY 324 (598)
Q Consensus 247 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 324 (598)
---.+..|..+..+-.+.|.+.+|++.|-+. .|+..|..++....+.|.+++-.+.+....+..-.|. .-
T Consensus 1098 Ae~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id 1169 (1666)
T KOG0985|consen 1098 AERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--ID 1169 (1666)
T ss_pred HHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--ch
Confidence 0012234444444444444444444433221 1444444555555555555555544444444322222 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc
Q 047932 325 TTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN 404 (598)
Q Consensus 325 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 404 (598)
..|+-+|++.++..+-.+.+. -|+......+..-|...+.++.|.-+|... .-|..+...+...
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHH
Confidence 344444555444444333221 234444444444444455555444444322 2234444555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047932 405 GFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLF 484 (598)
Q Consensus 405 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (598)
|++..|.+.-+++. +..+|..+..+|...+.+.-| +|...++-....-...++..|-..|-+++.+.++
T Consensus 1234 geyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 55555554433322 445566555555555444333 1222222333444566777777778888877777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 485 LDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 485 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+..+... ......|+-|.-.|.+- ++++-.+
T Consensus 1303 Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~E 1333 (1666)
T KOG0985|consen 1303 EAGLGLE-RAHMGMFTELAILYSKY-KPEKMME 1333 (1666)
T ss_pred Hhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 7665321 22334555555555543 3444444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.7e-05 Score=70.33 Aligned_cols=114 Identities=11% Similarity=0.158 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------c----H
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------R----I 121 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~----~ 121 (598)
...++++++.++++...-|. .+.+|...+....+..+++.+..+|.+++..- -+...|...|.- . .
T Consensus 32 t~~~~~~R~~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 32 TQPIDKVRETYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLSYVRETKGKLFGYR 107 (656)
T ss_pred cCCHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHHHHHHHccCcchHH
Confidence 34789999999999987776 88999999999999999999999999998763 334444444433 1 1
Q ss_pred HHHHHHHHHH-HHcCCCCCH-hhHHHHHHHHH---------hcCChhHHHHHHHHHHhc
Q 047932 122 MEAAALFTKL-RVFGCEPDV-FTYNTLINGLC---------RTGHTIVALNLFEEMANG 169 (598)
Q Consensus 122 ~~a~~~~~~~-~~~~~~~~~-~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~ 169 (598)
+.-.+.|+-. .+.|+.+-. ..|+..+..+- .+-+.+...+++++++..
T Consensus 108 ~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 108 EKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 2223334433 234443332 33555554332 233556677788888764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-06 Score=90.29 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCC
Q 047932 57 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGC 136 (598)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~ 136 (598)
+-.+=|++..+.+|+ +...|...+....+.++.+.|++++++++.. |.+....
T Consensus 1442 esaeDferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REee------------------------ 1494 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEE------------------------ 1494 (1710)
T ss_pred cCHHHHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhH------------------------
Confidence 344567778888887 8889999999999999999999999999864 2221100
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 047932 137 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV 216 (598)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 216 (598)
--...|.++++.-...|.-+...++|+++.+-. .....|..|...|.+.+.+++|.++++.|.+. .....
T Consensus 1495 -EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~ 1564 (1710)
T KOG1070|consen 1495 -EKLNIWIAYLNLENAYGTEESLKKVFERACQYC--------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTR 1564 (1710)
T ss_pred -HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchh
Confidence 011234444444444444444455555554421 12334444555555555555555555555443 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q 047932 217 VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDG 295 (598)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (598)
..|...+..+.+.++-+.|..++.+.++.-.+. ........+..-.+.|+.+.+..+|+-.+... +--...|+..+..
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDM 1643 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHH
Confidence 445555555555555555555555544431110 11122223333344555555555555544432 1234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC
Q 047932 296 FCLTGRVNHAKELFVSMESNGC 317 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~ 317 (598)
-.+.|+.+.+..+|+++...++
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCC
Confidence 5555555555555555554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-05 Score=74.77 Aligned_cols=214 Identities=12% Similarity=0.052 Sum_probs=149.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG-FVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
+..+-.++...++.++|+.+.++++..+ +.+..+|+....++...| ++++++..++.+.+.+.+ +..+|+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~ 111 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHH 111 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHH
Confidence 3444445556788899999999998876 455667777777777777 578999999998887544 6667777
Q ss_pred HHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc
Q 047932 222 LIHCFSHADDW--NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT 299 (598)
Q Consensus 222 l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 299 (598)
....+.+.|+. ++++.+++++++.. +-+..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 66666666653 67888888888764 347788888888888899999999999999887644 566666665555443
Q ss_pred ---CCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 300 ---GRV----NHAKELFVSMESNGCMHDVVSYTTLINGYCKT----KNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 300 ---g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
|.. +........++... |.+...|+.+...+... +...+|.+.+.+....++. +......++..|+.
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 222 45666665666553 55777888887777663 3345677777776654332 55666666666654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-06 Score=78.38 Aligned_cols=205 Identities=12% Similarity=0.126 Sum_probs=125.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFT 129 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~ 129 (598)
..+..++|+..++.++..+|. +..+|+....++...| ++++++..++++++.. |+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pk-------------------- 104 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PK-------------------- 104 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--Cc--------------------
Confidence 566788999999999998887 7788887777777776 5677788777777542 22
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCh--hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 130 KLRVFGCEPDVFTYNTLINGLCRTGHT--IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
+..+|+....++.+.|+. ++++..++++.+.+ +.|..+|+....++...|+++++++.++++
T Consensus 105 ---------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 105 ---------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-------AKNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred ---------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444443334444432 45666776776665 456677777777777777777777777777
Q ss_pred hhCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC----CCHHHHHHHHHH
Q 047932 208 KDENINPNVVTYNSLIHCFSHA---DD----WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN----GKMEEASRLLDL 276 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~ 276 (598)
++.++. +..+|+....++.+. |. .++.++...+++... +-|...|+.+...+... +...+|.+.+.+
T Consensus 169 I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 169 LEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 766544 556666555544433 21 234555555555542 33556666666666552 334456666666
Q ss_pred HHhcCCCcCHHHHHHHHHHHHh
Q 047932 277 MIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 277 ~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
..+.+ ..+......|+..|+.
T Consensus 247 ~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 247 VLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hhccc-CCcHHHHHHHHHHHHh
Confidence 55533 2244555556666553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.3e-07 Score=86.63 Aligned_cols=238 Identities=11% Similarity=0.062 Sum_probs=186.5
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047932 248 HPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL 327 (598)
Q Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (598)
+|-...-..+...+.+.|-...|..+++++. .+...+.+|...|+..+|..+..+..+. +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333344557778889999999999998764 4666788999999999999999988884 7899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
+.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|.....+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888888889999998875432 22223333445789999999999887764 55677888888889999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
+.|...|....... +.+...||.+..+|.+.++-.+|...+++..+.+ .-+...|...+....+-|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999988653 4467799999999999999999999999999976 446677888888889999999999999998
Q ss_pred HHCC-CCCCHHHHHHHHHHH
Q 047932 488 EAKG-VEPDCVIFNTIMLGF 506 (598)
Q Consensus 488 ~~~~-~~p~~~~~~~l~~~~ 506 (598)
.... ..-|......++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 7541 112444444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.4e-05 Score=73.86 Aligned_cols=336 Identities=14% Similarity=0.125 Sum_probs=178.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
|...|.-...-+...|+.+.|+.+|..+. .|.+++...|-+|+.++|-++-++-. |...
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AA 969 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAK---------------DYFSMVRIKCIQGKTDKAARIAEESG------DKAA 969 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhh---------------hhhhheeeEeeccCchHHHHHHHhcc------cHHH
Confidence 44445555555566788888888887653 35677888888999999988876543 5556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---------------CCCHHHHHHHHHHHHhcCCC
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK---------------NGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------~g~~~~a~~~~~~~~~~~~~ 283 (598)
...|.+.|-..|++.+|...|.+... +...|+.|-. ..+.-.|-++|++. |.
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~- 1036 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG- 1036 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-
Confidence 66788999999999999999887653 2222222211 11222233333332 10
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHcc----
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVS--------MESNG--CMHDVVSYTTLINGYCKTKNVEEALNLYRKMLP---- 349 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~--------~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 349 (598)
-+...+..|-+.|.+.+|+++-=+ ++..+ ...|+...+.-...++...++++|..++-...+
T Consensus 1037 ----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~A 1112 (1416)
T KOG3617|consen 1037 ----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGA 1112 (1416)
T ss_pred ----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 112223446666666666554211 11111 123455555555556666666666655433211
Q ss_pred ------CC----------------CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Q 047932 350 ------KG----------------IRPTV----VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK 403 (598)
Q Consensus 350 ------~~----------------~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (598)
.| -.|+. .....+...|.++|.+..|.+-|.++-.. ...++++.+
T Consensus 1113 lqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLK 1183 (1416)
T KOG3617|consen 1113 LQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLK 1183 (1416)
T ss_pred HHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHh
Confidence 11 12222 34556667788888888877766543211 011222222
Q ss_pred cCCHH----------------------------HHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------------HcC
Q 047932 404 NGFVL----------------------------EALELFCAIGNSKYELDIISYSCLIDGLC---------------KIG 440 (598)
Q Consensus 404 ~g~~~----------------------------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~g 440 (598)
.|+.+ .--++.+.+... -.....+..|...|. ..|
T Consensus 1184 SGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY~~cAqiEiee~q~ydKa~g 1261 (1416)
T KOG3617|consen 1184 SGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFYKSCAQIEIEELQTYDKAMG 1261 (1416)
T ss_pred cCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhH
Confidence 23222 111111111100 000111222222221 124
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHH-hcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH
Q 047932 441 KLETAWELFQSLSRVGLLPNVVTYNIMI----------HGLC-NDGQMDKAHDLFLDMEAKGVEP----DCVIFNTIMLG 505 (598)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~----------~~~~-~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~ 505 (598)
-.++|-+.+.++...+. ....++.|- ...- -..+....++-...|....+-| -...|..++..
T Consensus 1262 Al~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~ 1339 (1416)
T KOG3617|consen 1262 ALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIED 1339 (1416)
T ss_pred HHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHH
Confidence 45666666666665421 122232222 1111 1236666666677777653333 34678889999
Q ss_pred HHhcCCccccchhHHHHHHHhc
Q 047932 506 FIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
+....++..|.+ .++.|.++
T Consensus 1340 ~v~~k~y~~AyR--al~el~~k 1359 (1416)
T KOG3617|consen 1340 HVSRKNYKPAYR--ALTELQKK 1359 (1416)
T ss_pred HHhhhhccHHHH--HHHHHhhc
Confidence 999999999999 99999888
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.2e-06 Score=87.14 Aligned_cols=203 Identities=16% Similarity=0.113 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047932 252 VTFSVIVDELCKNGKMEEASRLLDLMIQI-GVHP---NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL 327 (598)
Q Consensus 252 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (598)
..|-..|......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+.- .....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 34555555555556666666665555442 1100 12244444444444455555555555555431 122334555
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHHcC
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA--DTYIYNTFIDGLCKNG 405 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 405 (598)
...|.+.+.+++|.++++.|.+.- .-....|...+..+.+.++-+.|..++.++++.- +. ......-.+..-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcC
Confidence 555555555555555555555441 1234455555555555555555555555555431 11 2223333344444555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 047932 406 FVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLP 459 (598)
Q Consensus 406 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 459 (598)
+.+.+..+|+..+... +.-...|+.++..-.++|+.+.+..+|++....++.|
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555555555554332 2234455555555555555555555555555544443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00033 Score=71.02 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=39.7
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG 105 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (598)
.+..+++..|+.-.++.++.+|..+.+.++.++ .+.+.|+.++|..+++.....+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~ 73 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK 73 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC
Confidence 346677899999999999999873333333333 3568899999998888766543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.5e-06 Score=85.19 Aligned_cols=281 Identities=10% Similarity=0.075 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 047932 215 NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV-VTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLM 293 (598)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 293 (598)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+.-+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 3445666666666666666666666655543 2332 2333333344455554333322 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHH
Q 047932 294 DGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVE 373 (598)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 373 (598)
.......++..+..++..+... ..+...+..+..+|-+.|+.++|..+|+++.+.++. |..+.+.+...|+.. +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 2222233333333333344432 223445666666677777777777777777666532 566666666666666 777
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 374 HALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
+|..++.+++.. +...+++..+..+|.++.... +.+...+. ++.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~----------------~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFL----------------RIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHH----------------HHHHHHH
Confidence 777766666543 445556667777777776543 21222222 2222222
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCC
Q 047932 454 RV-GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCF 532 (598)
Q Consensus 454 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 532 (598)
.. |..--..++..+-..|-..++|++++.+++.+++.. +-|.....-++.+|. +.+.. .. .+++.++.. ++
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~--~~ee~l~~s--~l 286 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HS--LLEDYLKMS--DI 286 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cc--hHHHHHHHh--cc
Confidence 21 112223445555566667777777777777777754 445566666666665 33333 34 445444431 22
Q ss_pred CCChHHHHHHHHHhCCCCCChhhHHHhhhcCccccc
Q 047932 533 QPKTLICSISIMLQKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 533 ~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
.-. ..++..++..|++.+..+|.|-+
T Consensus 287 ~~~----------~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 287 GNN----------RKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred ccC----------CccHHHHHHHHHHHeeecCCCEE
Confidence 211 12233444555565555555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-06 Score=83.43 Aligned_cols=221 Identities=15% Similarity=0.081 Sum_probs=181.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 283 HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
+|--..-..+...+...|-...|..+++++. .|.-++.+|...|+..+|..+..+-.++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3334445567788889999999999998765 3667888999999999999999988884 6789999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKL 442 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 442 (598)
+.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.... +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88888777889999988765432 11222333445799999999999887665 45677899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHH
Q 047932 443 ETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLM 521 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (598)
..|.+.|...... .|+ ...||.+-.+|.+.|+-.+|...++++.+.+ .-+...|...+....+.|.+++|.+ .+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~--A~ 610 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK--AY 610 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH--HH
Confidence 9999999998874 555 6789999999999999999999999999987 5566778888888899999999999 99
Q ss_pred HHHHhc
Q 047932 522 SQMSSC 527 (598)
Q Consensus 522 ~~~~~~ 527 (598)
.++...
T Consensus 611 ~rll~~ 616 (777)
T KOG1128|consen 611 HRLLDL 616 (777)
T ss_pred HHHHHh
Confidence 998766
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-05 Score=68.50 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=61.2
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047932 401 LCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQ 476 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 476 (598)
+.+..+++-|...+++|.+.. +-.+.+.|..++.+ .+++.+|.-+|++|.+. ..|+..+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 444445555555555555321 33444444444433 23455566666666553 34555566666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 477 MDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 477 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
+++|..+++.++.+. ..++.+...++.+-...|...++.. +.+.+..
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~-r~l~QLk 269 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTE-RNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHH-HHHHHHH
Confidence 666666666666543 3445555555555555555544333 2444444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-06 Score=75.52 Aligned_cols=119 Identities=14% Similarity=0.188 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKL 131 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~ 131 (598)
.++.+++...++..++.+|. +...|..++..|...|++++|...|+++.+.. |
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P----------------------- 104 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQLR--G----------------------- 104 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-----------------------
Confidence 55667777777777777765 77777777777777777777777777766542 2
Q ss_pred HHcCCCCCHhhHHHHHHH-HHhcCC--hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 132 RVFGCEPDVFTYNTLING-LCRTGH--TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
.+...+..+..+ +.+.|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|+..|+.+.
T Consensus 105 ------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 105 ------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-------ANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 244555555554 345555 366777777766665 4456666666666667777777777777666
Q ss_pred hC
Q 047932 209 DE 210 (598)
Q Consensus 209 ~~ 210 (598)
+.
T Consensus 172 ~l 173 (198)
T PRK10370 172 DL 173 (198)
T ss_pred hh
Confidence 54
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.6e-06 Score=83.66 Aligned_cols=186 Identities=16% Similarity=0.110 Sum_probs=113.6
Q ss_pred CCCCChhhHHHHHHHhhhhh---hcchhHHHHHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 047932 9 NEPSDPTTTAKLKESLRLTV---KDGASIEKFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCL 85 (598)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (598)
-+.+.|++-+....++...- ..+..++..++......+.+.. ..+++.-.....+..|. ++.++..|+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~La~i~ 96 (694)
T PRK15179 23 GPASGPTILDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHK----PAAALPELLDYVRRYPH--TELFQVLVARAL 96 (694)
T ss_pred CCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcc----hHhhHHHHHHHHHhccc--cHHHHHHHHHHH
Confidence 34566777666665555552 2223444445554443332222 23333333333445555 799999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH
Q 047932 86 AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVA 159 (598)
Q Consensus 86 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 159 (598)
.+.|.+++|..+++.+.+. .|+.......... ++++|+..+++....++ .+......+..++.+.|++++|
T Consensus 97 ~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchHHH
Confidence 9999999999999999976 5665443322221 66666666666665532 2444555666666666777777
Q ss_pred HHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 160 LNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
..+|+++...+ +.+..++..+...+.+.|+.++|...|+...+.
T Consensus 174 ~~~y~~~~~~~-------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 174 DACFERLSRQH-------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777666643 344666666666666667777777766666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.4e-06 Score=74.73 Aligned_cols=185 Identities=12% Similarity=-0.022 Sum_probs=126.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT---VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 215 (598)
....+..++..+...|+++.|...|+++.... +.+. .++..+..++...|++++|...++.+.+......
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-------PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 45567788888999999999999999988765 2222 4677788899999999999999999987532211
Q ss_pred H--HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Q 047932 216 V--VTYNSLIHCFSHA--------DDWNEAKRLFIKMMDQGVHPNV-VTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP 284 (598)
Q Consensus 216 ~--~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (598)
. .++..+..++... |++++|.+.|+.+... .|+. ..+..+..... ... ..
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~------- 165 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL------- 165 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH-------
Confidence 1 2455555666554 7788899999888876 2332 22222211100 000 00
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC--MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
......+...+.+.|++++|...++....... +.....+..+..++...|++++|..+++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01122455678888999999999998887631 223567888889999999999999988887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.1e-06 Score=70.87 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=83.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 047932 369 VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGL-CKIGK--LETA 445 (598)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 445 (598)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|+++.... +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666554 5567777777777777777777777777777654 33666676666653 55565 4777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047932 446 WELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCV 497 (598)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 497 (598)
.+++++..+.+.. +...+..+...+...|++++|+..|+++++.. +|+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 7777777775322 45666677777777777777777777777654 45443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1e-05 Score=69.92 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=112.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 047932 360 STLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI 439 (598)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 439 (598)
..+-..+...|+-+....+........ +.+.......+....+.|++..|...++++.... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445555666677776666666654432 4456666667777788888888888888877654 66788888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhH
Q 047932 440 GKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGK 519 (598)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 519 (598)
|+++.|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+ .-|...-..+..+....|++++|..
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~-- 223 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED-- 223 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh--
Confidence 88888888888887742 2245667777777888888888888888877654 3366666677777778888888777
Q ss_pred HHHHH
Q 047932 520 LMSQM 524 (598)
Q Consensus 520 ~~~~~ 524 (598)
+..+-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 55444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.5e-05 Score=70.85 Aligned_cols=240 Identities=17% Similarity=0.136 Sum_probs=149.6
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHH---hCCCCCCHHhHHHHHhc-cHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHh
Q 047932 80 ILFGCLAKNKH-YDTVLSLFKRLN---STGLFPDLYTHSILINC-RIMEAAALFTKLRVFG--CEPDVFTYNTLINGLCR 152 (598)
Q Consensus 80 ~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~p~~~~~~~ll~~-~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 152 (598)
.-+..+.+.|. +....+.|+++. ..+-.|+.+..+.=+.. ++.++...-+.+...+ -.|+...+...+.....
T Consensus 207 ~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~ 286 (484)
T COG4783 207 IGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE 286 (484)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence 34445556663 445567777776 33444444433222222 6666665655555432 12344444555544443
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (598)
...-..+..++.+..+.. -...+.-....+...|++++|+..++.+... .+-|+..+......+.+.++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~---------~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~ 356 (484)
T COG4783 287 ALPNQQAADLLAKRSKRG---------GLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKA 356 (484)
T ss_pred cccccchHHHHHHHhCcc---------chHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCh
Confidence 333333333333322211 1233333444556778888888888887775 344666667777888888888
Q ss_pred HHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 233 NEAKRLFIKMMDQGVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVS 311 (598)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 311 (598)
.+|.+.++++... .|+ ......+..++.+.|++.+|+++++...... +.|+..|..|..+|...|+..++.....
T Consensus 357 ~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A- 432 (484)
T COG4783 357 KEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA- 432 (484)
T ss_pred HHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH-
Confidence 8888888888876 344 4556667788888888888888888887764 4578888888888888888777765443
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 312 MESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
..|...|++++|+..+....+.
T Consensus 433 -----------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 433 -----------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 3456678888888888777665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-05 Score=69.06 Aligned_cols=156 Identities=13% Similarity=0.003 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC
Q 047932 327 LINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGF 406 (598)
Q Consensus 327 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 406 (598)
+-..+...|+-+.+..+........ ..|.......+....+.|++..|...+.++.... ++|...++.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 3344444454444444444433221 1133334445555555555555555555555443 4455555555555555555
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 407 VLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLD 486 (598)
Q Consensus 407 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (598)
++.|..-|.+..+.. .-+...++.+.-.+.-.|+++.|..++......+. -|...-..+.......|++++|..+...
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 555555555555442 22444455555555555555555555555544321 1333444444455555555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.4e-06 Score=73.98 Aligned_cols=188 Identities=9% Similarity=-0.015 Sum_probs=117.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC--HHHH
Q 047932 319 HDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR-PT-VVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAAD--TYIY 394 (598)
Q Consensus 319 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 394 (598)
.....+..++..+...|++++|...|+++....+. |. ...+..+..++...|++++|...++++.+...... ...+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566677777788888888888888887765322 11 13556677778888888888888888876532111 1234
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047932 395 NTFIDGLCKN--------GFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNI 466 (598)
Q Consensus 395 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 466 (598)
..+..++... |++++|...|+.+.... +-+...+..+..... .. .... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHHH--------HHHHH
Confidence 4445555544 66777777777777553 212222222111100 00 0000 01124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 467 MIHGLCNDGQMDKAHDLFLDMEAKG--VEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
+...+.+.|++.+|+..+++++... -+.....+..++.++...|++++|.. +++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~--~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD--AAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhh
Confidence 5566788899999999998888752 12235677888888899999999988 88888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-05 Score=67.08 Aligned_cols=252 Identities=12% Similarity=0.087 Sum_probs=157.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
+.-.|.+..++..-....... .+...-..+.++|...|.+..... .+.... .|....+..+.......++.+.-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 334566665555444433321 233333444556666665543332 222221 33444444444444444444433
Q ss_pred H-HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 376 L-KLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 376 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
. .+.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.+++|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 334444444334443444445567889999999999887632 333444445667788899999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccC
Q 047932 455 VGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSM 530 (598)
Q Consensus 455 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 530 (598)
. .+..+.+.|..++.+ .+.+..|.-+|++|-++ .+|+..+.+....++...|++++|.. +++.+..+
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~--lL~eaL~k--- 236 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES--LLEEALDK--- 236 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH--HHHHHHhc---
Confidence 4 366777778777763 45789999999999875 58999999999999999999999999 99999976
Q ss_pred CCCCChHHHHH--HH--HHhCCCCCChhhHHHhhhcCccccch
Q 047932 531 CFQPKTLICSI--SI--MLQKDMSPGDTMFSTALLMDPDCSCD 569 (598)
Q Consensus 531 ~~~p~~~~~~~--~~--~~~~~~~~a~~~~~~~l~~~P~~~~~ 569 (598)
...++.+... .+ ....+.+--.+...++....|+++-+
T Consensus 237 -d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 237 -DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred -cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 2233333333 22 22333344467777777778887754
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.4e-06 Score=66.82 Aligned_cols=108 Identities=10% Similarity=-0.093 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (598)
+......+...|++++|...|+.+.... +.+...|..+..++...|++++|+..|++....+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445666777777777777777777654 4466777777777777778888888777777653 2356667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 474 DGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
.|++++|+..|+..++.. +.+...+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~ 134 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS-YADASWSEIRQN 134 (144)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 788888888887777653 334444444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=6e-05 Score=78.70 Aligned_cols=239 Identities=11% Similarity=0.053 Sum_probs=149.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
....+..|+..|...|++++|.++.+...+.. |.....|..+...+.+.++..++.-+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh---------------
Confidence 45678899999999999999999999887764 33455555555577777775554444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
.++.......++.-...++..+... .-+...+..++.+|.+.|+.+++..+|+++++.. +-|..+.|.+...|..
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 2344444455554445555555553 3344567778888889999999999999998887 4478888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 299 TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKL 378 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 378 (598)
. +.++|.+++.+.... +...+++.++.++|.++....+. +...+..+.+.....-
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------- 217 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------- 217 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------
Confidence 8 888888888877653 55566777777777777765322 2222221111111110
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 379 FDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC 437 (598)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (598)
+..--..++.-+...|-..++++++..+++.+++.. +.|......++.+|.
T Consensus 218 -------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred -------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111112233334444555556666666666666544 224444555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-05 Score=66.10 Aligned_cols=95 Identities=7% Similarity=-0.090 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
+..+...+...|++++|...|+.....+ +.+...|..+..++.+.|++++|...|+.....+. .+...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 4456677777888888888888877765 55677777777888888888888888888777543 366777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..++...|++++|...|+..++.
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777888888888888877765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-05 Score=64.83 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=131.8
Q ss_pred cCCHHHHHHHHHHHccC---C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHH
Q 047932 334 TKNVEEALNLYRKMLPK---G-IRPTV-VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVL 408 (598)
Q Consensus 334 ~~~~~~A~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 408 (598)
..+.++..+++.++... | ..++. ..|..++-+....|+.+.|..+++.+.+.- +.+..+...-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34566677766666432 2 33343 334555566677888888888888887763 444444443344456678888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 409 EALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 409 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
+|+++++.+++.+ +.|..++-.=+...-..|+.-+|++-+....+. +.-|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888765 456666766666677778888888888887775 56688888888888998899999998888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC---ccccchhHHHHHHHhc
Q 047932 489 AKGVEPDCVIFNTIMLGFIRNNE---TSKSSRGKLMSQMSSC 527 (598)
Q Consensus 489 ~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~ 527 (598)
-.. |-++..+..+...+.-.|. .+-|.+ ++.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark--yy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARK--YYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHh
Confidence 654 5577777778777665443 455666 88888754
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.1e-05 Score=76.98 Aligned_cols=181 Identities=9% Similarity=0.078 Sum_probs=135.2
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHH
Q 047932 282 VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYST 361 (598)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 361 (598)
...+...+..|.....+.|.+++|..+++.+.+.. |.+......++..+.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34468888889999999999999999999998874 446667778888899999999999999999887543 5667778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 047932 362 LFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGK 441 (598)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 441 (598)
+..++.+.|++++|..+|+++...+ +.+...+..+..++...|+.++|...|+.+.+.. .+....|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 8888899999999999999998843 4557888889999999999999999999988653 345555554442 3
Q ss_pred HHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 047932 442 LETAWELFQSLSRV----GLLPNVVTYNIMIHGLC 472 (598)
Q Consensus 442 ~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~ 472 (598)
...-..+++++.-. |.+....++...+..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 44445556655332 22333445555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-07 Score=53.66 Aligned_cols=33 Identities=61% Similarity=1.147 Sum_probs=31.4
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047932 135 GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMA 167 (598)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (598)
|+.||..+|+.||.+||+.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788999999999999999999999999999983
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.2e-07 Score=53.14 Aligned_cols=32 Identities=50% Similarity=0.966 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 456 GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 456 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.9e-05 Score=70.68 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=56.9
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 047932 401 LCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDK 479 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 479 (598)
+...|.+++|+..++.++... +.|+..+......+...++..+|.+.++++... .|+ ......+..++.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 334455555555555554332 334444455555555555555555555555543 233 3334444555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 480 AHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 480 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
|+.+++...... +.|+..|..|..+|...|+..++..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 555555554432 4455555555555555555544444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00037 Score=59.96 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=31.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 299 TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKL 378 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 378 (598)
.|.+++|.++++.+.+.+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344444444444444332 223333333333333333333333333333332 112344444444444444444444444
Q ss_pred HHHHh
Q 047932 379 FDEMQ 383 (598)
Q Consensus 379 ~~~~~ 383 (598)
+++++
T Consensus 177 lEE~l 181 (289)
T KOG3060|consen 177 LEELL 181 (289)
T ss_pred HHHHH
Confidence 44433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.7e-05 Score=64.72 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=61.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCH
Q 047932 61 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDV 140 (598)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~ 140 (598)
.|+.++..+|. +......++..+.+.|++++|...|+++...+ +.+.
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------------------p~~~ 51 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------------------------------PYNS 51 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------------------------------CCcH
Confidence 34555555554 44555556666666666666666666555431 1234
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
..+..+...+.+.|++++|...++.....+ +.+...+..+...+...|++++|...|+...+.
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALD-------PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555566666666666666666655543 344555555555666666666666666655553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.5e-05 Score=62.89 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=65.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
......++..+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|...++.....+ +.+...+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHH
Confidence 3445556666677777777777777776654 4456666777777777777777777777766553 3355666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|...|+...+.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666777777777777777766664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0074 Score=59.11 Aligned_cols=176 Identities=13% Similarity=0.039 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+..+|...+......|+.+.+.-+|++..-. +..-...|-..+......|+.+-|..++....+.-.+....+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3455666666666677777777666665521 122233455555555555777777666666555322212211111112
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccccc---hhHHHHHHHhcccCCCCCChHHHHH----
Q 047932 470 GLCNDGQMDKAHDLFLDMEAKGVEPDC-VIFNTIMLGFIRNNETSKSS---RGKLMSQMSSCWSMCFQPKTLICSI---- 541 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~p~~~~~~~---- 541 (598)
.+-..|++..|..+++...+.- |+. ..-..-+....+.|+.+.+. . ++...... ...+.......
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~--l~s~~~~~---~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNE--LYSSIYEG---KENNGILEKLYVKFA 447 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHH--HHHHhccc---ccCcchhHHHHHHHH
Confidence 2234567777777777776542 332 22233344455666666655 3 44443322 22222211111
Q ss_pred --HHHHhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 542 --SIMLQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 542 --~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
.....++.+.|..++..+++..|++...+..+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 12234666777777777777777777666555
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0083 Score=59.42 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNS 103 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (598)
+++|.++.+ .+ |.+..|..++..-.+.-.++.|...|-+...
T Consensus 679 ledA~qfiE----dn---PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 679 LEDAIQFIE----DN---PHPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred hHHHHHHHh----cC---CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 366665543 23 5789999999887777778888888776643
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.013 Score=60.04 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=49.8
Q ss_pred cccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 047932 47 QGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL 110 (598)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 110 (598)
..+.+.|+.++|..+++......+. |..+...+...|...|+.++|..+|++..+. .|+.
T Consensus 51 Lsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~e 110 (932)
T KOG2053|consen 51 LSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSE 110 (932)
T ss_pred HHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcH
Confidence 3467899999999888877665554 8888999999999999999999999999876 4543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.9e-05 Score=70.75 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047932 396 TFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG 475 (598)
Q Consensus 396 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (598)
.++..+...++++.|+.+|+++.+.. |+ ....++..+...++..+|.+++++..... +-+...+..-...+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444455556666666666665442 22 23345555555566666666666665431 224444444555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 476 QMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
+++.|+++.+++.... |-+..+|..|..+|...|+++.|+- .++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALl--aLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALL--ALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHH--HHhcCc
Confidence 6666666666666542 3344566666666666666666666 666553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00019 Score=59.18 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=58.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHH
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPD---TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV--VTYNSLIHCFS 227 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 227 (598)
.++...+...++.+...+ +.+ ......+...+...|++++|...|+.+......++. .....|..++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~-------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 556666666666666544 122 223333445556666666666666666654322211 12333455555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047932 228 HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDL 276 (598)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 276 (598)
..|++++|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 97 ~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 97 QQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666666443221 12233444455556666666666665554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0003 Score=57.95 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=35.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047932 259 DELCKNGKMEEASRLLDLMIQIGVHPNT--FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKN 336 (598)
Q Consensus 259 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 336 (598)
..+...|++++|...|+.+......+.. .....+...+...|++++|+..++..... ......+.....+|...|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 3444445555555555444443311111 12222334444444454444444332221 1222333344444445555
Q ss_pred HHHHHHHHHH
Q 047932 337 VEEALNLYRK 346 (598)
Q Consensus 337 ~~~A~~~~~~ 346 (598)
+++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00044 Score=66.12 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCC
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGK 266 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 266 (598)
|+..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++.+.++. .+.+...+......+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3344444455555555555555431 22 2233444444455555555555555443 12233344444444445555
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 267 MEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSM 312 (598)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 312 (598)
++.|+++.+++.+.. +.+-.+|..|..+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555554431 112234444445555555555554444433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.7e-05 Score=55.48 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=54.8
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 117 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 117 (598)
++.|++++|+..|+.++..+|. +..++..++.+|.+.|++++|..+++++... .|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4689999999999999999997 9999999999999999999999999999976 56655554443
|
... |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.1e-05 Score=46.29 Aligned_cols=33 Identities=55% Similarity=1.026 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 215 (598)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.87 E-value=3e-05 Score=45.63 Aligned_cols=33 Identities=48% Similarity=1.024 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 495 (598)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00072 Score=53.56 Aligned_cols=98 Identities=15% Similarity=0.024 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYE--LDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL--PNVVTYNIMI 468 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~ 468 (598)
++..++..+.+.|++++|...|..+...... .....+..+..++...|++++|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555666667777777777666643211 11334555666677777777777777776653211 1134455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 047932 469 HGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666777777777777777665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00023 Score=60.69 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN--VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
...+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|+..++++++.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566777777778888888888888776432222 3567777788888888888888888888753 33566667777
Q ss_pred HHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCCCCChhhHHHhhhcCccc
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDMSPGDTMFSTALLMDPDC 566 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P~~ 566 (598)
.++...|+...+.. -++.+.. .+++|.+.++++++++|++
T Consensus 114 ~~~~~~g~~~~a~~--~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAG--DQDEAEA---------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhh--CHHHHHH---------------------HHHHHHHHHHHHHhhCchh
Confidence 77777777666555 4444321 2344667788888888887
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.021 Score=53.22 Aligned_cols=91 Identities=15% Similarity=0.031 Sum_probs=56.6
Q ss_pred HHHHhcCCHHHHHHHHHHHccC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC
Q 047932 329 NGYCKTKNVEEALNLYRKMLPK---GIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG 405 (598)
Q Consensus 329 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 405 (598)
+-..+.|++..|.+.|.+.+.. +..++...|........+.|+..+|+.--+.....+ +.-...+..-..++...+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALE 335 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHH
Confidence 3455677888888888877654 344455666666666677788877777776666542 111222333334555667
Q ss_pred CHHHHHHHHHHHhhC
Q 047932 406 FVLEALELFCAIGNS 420 (598)
Q Consensus 406 ~~~~A~~~~~~~~~~ 420 (598)
+|++|.+-|++..+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777777654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00035 Score=52.61 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
+..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++....... .+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHH
Confidence 4445556666677777777776666543 33345556666666666666666666666655432 233455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047932 223 IHCFSHADDWNEAKRLFIKMMD 244 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~ 244 (598)
...+...|+++.|...+....+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 6666666666666666665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0018 Score=52.38 Aligned_cols=95 Identities=7% Similarity=-0.112 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (598)
.-.+...+...|++++|..+|+.+.... +-+..-|..|.-++-..|++++|+..|......++ .|...+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344445566677777777777666554 22455566666677777777777777777666532 245566666677777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047932 474 DGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~ 490 (598)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777766653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.3e-05 Score=44.57 Aligned_cols=32 Identities=38% Similarity=0.686 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP 494 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 494 (598)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 56666666666666666666666666666554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.017 Score=53.83 Aligned_cols=275 Identities=13% Similarity=0.051 Sum_probs=142.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 047932 148 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN-VVTYNSLIHCF 226 (598)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 226 (598)
..+.+..++..|+..+..+.... +.+..-|..-...+...|++++|.--.+.-.+. +|. ...+.-.-.++
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCH 127 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhh
Confidence 34555666667777777766653 445555666666666667777766655544432 111 11222233334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CcCHHHHHHH-HHHHHhcCCHHH
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV-HPNTFVYNTL-MDGFCLTGRVNH 304 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l-l~~~~~~g~~~~ 304 (598)
...++..+|.+.++. ...+ ....++..++.+..... +|....+..+ ..++...|++++
T Consensus 128 ~a~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred hhhHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 444444444444431 0001 01112222222222111 1222222222 244555666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHH-------------HHHHHHHHhcCC
Q 047932 305 AKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTY-------------STLFLGLFEVHQ 371 (598)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~ 371 (598)
|.++--.+.+.+ ..+......-..++...++.+.+..-|++.+..+ |+...- ..=..-..+.|+
T Consensus 188 a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 188 AQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred HHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 666665555543 1122211111223334566666666666665542 222111 111223456788
Q ss_pred HHHHHHHHHHHhhC---CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 372 VEHALKLFDEMQHN---DVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWEL 448 (598)
Q Consensus 372 ~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 448 (598)
+..|.+.|.+.+.. +..++...|.....+..+.|+..+|+.-.+...+.+ ..-...+..-..++...+++++|.+-
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888764 244556667777777788888888888888777542 11122334444566677888888888
Q ss_pred HHHHHhC
Q 047932 449 FQSLSRV 455 (598)
Q Consensus 449 ~~~~~~~ 455 (598)
++...+.
T Consensus 344 ~~~a~q~ 350 (486)
T KOG0550|consen 344 YEKAMQL 350 (486)
T ss_pred HHHHHhh
Confidence 8887664
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00035 Score=67.05 Aligned_cols=122 Identities=12% Similarity=0.054 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 352 IRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN--DVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429 (598)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 429 (598)
.+.+...+..++..+....+.+.+..++.+.... ....-..+..++++.|...|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445666666677666666777777777666654 12222334457777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (598)
+.|+..+.+.|++..|.++...|...+...+..++..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 77777777777777777777776655555555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0012 Score=56.37 Aligned_cols=108 Identities=11% Similarity=-0.013 Sum_probs=78.1
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhh
Q 047932 63 DYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFT 142 (598)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~ 142 (598)
..+....+.+.....+..++..+...|++++|...|+++++....+ ......
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------------------------~~~~~~ 74 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP----------------------------NDRSYI 74 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----------------------------chHHHH
Confidence 3444444444466678888899999999999999999888642111 001356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
+..++.++.+.|++++|...+++..+.. +.+...+..+...+...|+...+..-++
T Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELN-------PKQPSALNNIAVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHhHhhCHH
Confidence 7888999999999999999999998865 4457777788888888887655554433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00081 Score=60.06 Aligned_cols=114 Identities=10% Similarity=0.037 Sum_probs=94.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc---------cHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC---------RIM 122 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---------~~~ 122 (598)
..+++.....++..++.+|. |...|..|..+|.++|++..|...|.+..+. .|+.......+.. ...
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 135 EQEMEALIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred cccHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccH
Confidence 34467788888888899987 9999999999999999999999999999876 4444433322222 778
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
++..+|+++...+ +.++.+...|...+...|++.+|...++.|.+..
T Consensus 211 ~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 211 KARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8999999999886 3478888889999999999999999999999975
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00092 Score=52.94 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN--PNVVTY 219 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 219 (598)
++..++..+.+.|++++|.+.|+.+....+. .+.....+..+...+.+.|++++|.+.|+.+...... .....+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3445555666666666666666666654310 0111334555666666666666666666666553211 113445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|...++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 55556666666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00029 Score=53.05 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCND 474 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (598)
..+...+...|++++|..+++.+.+.. +.+...+..+..++...+++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 334445555555555555555555432 2233444555555555555555555555555432 11223444555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 047932 475 GQMDKAHDLFLDMEA 489 (598)
Q Consensus 475 g~~~~A~~~~~~~~~ 489 (598)
|+++.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.4e-05 Score=56.61 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=63.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKL 131 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~ 131 (598)
+|+++.|+.+|++++...|..++...+..++.++.+.|++++|..++++ .+. .+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~----------------------- 55 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DP----------------------- 55 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HH-----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CC-----------------------
Confidence 6899999999999999988522566777799999999999999999987 321 11
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047932 132 RVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEM 166 (598)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (598)
.+....-.++.+|.+.|++++|+++|++.
T Consensus 56 ------~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 56 ------SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp ------CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 12334445688899999999999998763
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.3e-05 Score=44.57 Aligned_cols=32 Identities=38% Similarity=0.711 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKDENINP 214 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 214 (598)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00066 Score=54.83 Aligned_cols=95 Identities=9% Similarity=-0.012 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
.-.+...+...|++++|..+|+-+...+ +-+..-|..|..++-..|++.+|+..|......++ .|...+-.+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~a 109 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHH
Confidence 3445555667777777777777776654 44566666777777777777777777777776653 366667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..++...|+.+.|.+.|+..+..
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777766554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0034 Score=56.51 Aligned_cols=54 Identities=13% Similarity=-0.041 Sum_probs=43.2
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSS---FNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
..+.|++++|.+.|+.++...|. +..+ ...++.++.+.+++++|...|++.++.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45678999999999999988887 3333 356778888899999999999988876
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00022 Score=63.19 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=62.8
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHH
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEA 124 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a 124 (598)
-|+.+.+.++|.+|+..|..++...|. |+..|..-..+|.+.|.++.|++-.+..+... |
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p---------------- 146 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSID--P---------------- 146 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--h----------------
Confidence 355556677777777777777777765 77777777777777777777777777666431 1
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 169 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 169 (598)
.-..+|..|..+|...|++++|++.|++.+..
T Consensus 147 -------------~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 147 -------------HYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred -------------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 12346677777777777777777777777764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.9e-05 Score=53.68 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=50.1
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
.+.+.|++++|...|+.+++.+|. ++.+|..++.++.+.|++++|...|+++++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456889999999999999999987 9999999999999999999999999999875
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00088 Score=56.88 Aligned_cols=116 Identities=11% Similarity=-0.038 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHc
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVF 134 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~ 134 (598)
+..+...+..+++..+.......|..++..+..+|++++|...|++++... |+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~------------------------ 68 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDP------------------------ 68 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccc------------------------
Confidence 555666666665554442346677888888889999999999999988642 210
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHH-------hcCCHHHHHHHHH
Q 047932 135 GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC-------KEGFVDKAMELFL 205 (598)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~~~A~~~~~ 205 (598)
.....++..+..+|...|++++|+..++...... +....++..+...+. ..|+++.|...++
T Consensus 69 --~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 69 --YDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred --hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 1123478889999999999999999999998865 444566777777776 5566554444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.5e-05 Score=56.51 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047932 404 NGFVLEALELFCAIGNSKYE-LDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHD 482 (598)
Q Consensus 404 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 482 (598)
.|+++.|+.+++++...... ++...+..+..+|.+.|++++|+.++++ .+.+. .+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555555555555543221 1233333455555555555555555555 21111 112222233455555555555555
Q ss_pred HHHH
Q 047932 483 LFLD 486 (598)
Q Consensus 483 ~~~~ 486 (598)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.039 Score=51.07 Aligned_cols=292 Identities=13% Similarity=0.085 Sum_probs=172.4
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhCCCHHHHHHHHHHHHhcCCCcCHH--HHHHH
Q 047932 219 YNSLIHCFS--HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDE--LCKNGKMEEASRLLDLMIQIGVHPNTF--VYNTL 292 (598)
Q Consensus 219 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l 292 (598)
|..|-.+++ -.||-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444433 356666666666554432 23344444444443 33567888888888888752 1211 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCC-CCCCHH--HHHHHHHHH---
Q 047932 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKG-IRPTVV--TYSTLFLGL--- 366 (598)
Q Consensus 293 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~--~~~~l~~~~--- 366 (598)
.-...+.|+.+.|..+-+.....- +.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 233345677777777777766543 2344556777888888888888888887655432 222321 111222111
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTY-IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETA 445 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 445 (598)
.-..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+-+.. |.+.++..++ +.+.|+ .+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--cH
Confidence 1123455666655555543 44422 22334567889999999999999988774 4444333222 334444 34
Q ss_pred HHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCccccchhHHHH
Q 047932 446 WELFQSLSR-VGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR-NNETSKSSRGKLMS 522 (598)
Q Consensus 446 ~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 522 (598)
+.-+++... ..++|| ......+..+....|++..|..--+.... ..|....|..+...-.. .|+-.++.. ++.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~--wlA 387 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQ--WLA 387 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHH--HHH
Confidence 433433322 113444 56666778888889999998888777765 46888888888877654 488888888 999
Q ss_pred HHHhc
Q 047932 523 QMSSC 527 (598)
Q Consensus 523 ~~~~~ 527 (598)
+..+.
T Consensus 388 qav~A 392 (531)
T COG3898 388 QAVKA 392 (531)
T ss_pred HHhcC
Confidence 98876
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00031 Score=62.30 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=74.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 047932 399 DGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQM 477 (598)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 477 (598)
.-+.+.+++.+|+..|.++++.. +-|...|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34667788888888888888765 346777777788888888888888888887774 444 56788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 478 DKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 478 ~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
.+|++.|++.++ +.|+-.+|-.=+
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 888888888876 456655554433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.047 Score=51.71 Aligned_cols=435 Identities=15% Similarity=0.141 Sum_probs=230.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHh------HHHHHhc----cHHHHHHHHHHHHHcCCCCCHhhHHHHHHH--HHh
Q 047932 85 LAKNKHYDTVLSLFKRLNSTGLFPDLYT------HSILINC----RIMEAAALFTKLRVFGCEPDVFTYNTLING--LCR 152 (598)
Q Consensus 85 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~------~~~ll~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 152 (598)
+.+++++.+|..+|.+..+.. ..++.. .+.++++ +++.....+....+. .| ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 345666666666666655432 112111 2233333 444444444444443 12 2344444443 347
Q ss_pred cCChhHHHHHHHHHHhcCCCC---ccc-----cCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHHHHH
Q 047932 153 TGHTIVALNLFEEMANGNGEF---GVV-----CKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN----PNVVTYN 220 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~ 220 (598)
.+++.+|.+.+.....+-... ... .-+|-..=+..++.+...|++.++..+++++...-.+ -+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 889999999888776652100 000 0011122256678889999999999999988765333 5788888
Q ss_pred HHHHHHHhc--------CCH-------HHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHhCC--CHHHHHHHHHHH
Q 047932 221 SLIHCFSHA--------DDW-------NEAKRLFIKMMDQ------GVHPNVVTFSVIVDELCKNG--KMEEASRLLDLM 277 (598)
Q Consensus 221 ~l~~~~~~~--------~~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~ 277 (598)
.++-.+.+. ... +.+.-..++|... .+.|.......++....-.. +..--.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 754443321 111 2222222222211 12333333333443332211 122222333333
Q ss_pred HhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCC
Q 047932 278 IQIGVHPNTF-VYNTLMDGFCLTGRVNHAKELFVSMESNGCM----HDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352 (598)
Q Consensus 278 ~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 352 (598)
...-+.|+-. +...+...+.. +.+++..+.+.+....+. .-..++..++....+.++...|...+.-+....
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld- 328 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD- 328 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-
Confidence 3333444433 33344444433 555555555544433211 134567778888888999999988887766542
Q ss_pred CCCHHHHH-------HHHHHHH----hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH---HHHHHcCC-HHHHHHHHHHH
Q 047932 353 RPTVVTYS-------TLFLGLF----EVHQVEHALKLFDEMQHNDVAADTYIYNTFI---DGLCKNGF-VLEALELFCAI 417 (598)
Q Consensus 353 ~~~~~~~~-------~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~ 417 (598)
|+...-. .+-...+ ...+...-+.+|......++.. ......++ .-+-+.|. -++|+.+++.+
T Consensus 329 -p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 329 -PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred -CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 2222111 1111111 1123334455566665554321 11222222 22334454 78899999988
Q ss_pred hhCCCCCCHHHHHHHH----HHHHH---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHH
Q 047932 418 GNSKYELDIISYSCLI----DGLCK---IGKLETAWELFQSLSRVGLLPN----VVTYNIMIHG--LCNDGQMDKAHDLF 484 (598)
Q Consensus 418 ~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~ 484 (598)
.+.. +-|..+-+.+. ..|.. ...+.+-..+-+-+.+.|+.|- ...-|.|.++ +..+|++.++.-.-
T Consensus 407 l~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 407 LQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred HHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8643 33444333322 22222 2234444555555566777764 2334445443 44789999998777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 485 LDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 485 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
.-+.+ +.|++.+|..++-++....++++|.. ++..+. |+...+..
T Consensus 486 ~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~--~l~~LP--------~n~~~~ds 530 (549)
T PF07079_consen 486 SWLTK--IAPSPQAYRLLGLCLMENKRYQEAWE--YLQKLP--------PNERMRDS 530 (549)
T ss_pred HHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHH--HHHhCC--------CchhhHHH
Confidence 66665 68999999999999999999999999 988774 66666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00045 Score=66.30 Aligned_cols=122 Identities=12% Similarity=0.184 Sum_probs=94.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE--NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFS 255 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (598)
+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 556667777788887888888888888877764 222234455688999999999999999998888889999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT 299 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 299 (598)
.++..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999888887776666666666655555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00072 Score=62.52 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047932 357 VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK-NGFVLEALELFCAIGNSKYELDIISYSCLIDG 435 (598)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (598)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|......-.+ .++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888999999999888543 3344455555555334 46666699999988865 45577888888898
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047932 436 LCKIGKLETAWELFQSLSRVGLLPNV---VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF 506 (598)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 506 (598)
+...++.+.|..+|++.... +.++. ..|..++..-.+.|+.+.+.++.+++.+. -|+...+..+..-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 89999999999999988765 33222 47888888888889999999998888874 34433444444333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0014 Score=62.93 Aligned_cols=85 Identities=14% Similarity=0.020 Sum_probs=37.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWE 447 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 447 (598)
..|+++.|+..|.++++.. +.+...+..+..++...|++++|+..+++++... +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444444444444444432 2233444444444444444444444444444332 2233344444444444444444444
Q ss_pred HHHHHHh
Q 047932 448 LFQSLSR 454 (598)
Q Consensus 448 ~~~~~~~ 454 (598)
.|++.++
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.002 Score=61.99 Aligned_cols=92 Identities=9% Similarity=-0.049 Sum_probs=79.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQM 477 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 477 (598)
...+...|++++|+..|++++... +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455678899999999999999875 4478889999999999999999999999999863 23577888899999999999
Q ss_pred HHHHHHHHHHHHCC
Q 047932 478 DKAHDLFLDMEAKG 491 (598)
Q Consensus 478 ~~A~~~~~~~~~~~ 491 (598)
++|+..|+++++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0016 Score=60.30 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 047932 322 VSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLG-LFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDG 400 (598)
Q Consensus 322 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (598)
.+|..++....+.+..+.|..+|.++...+. .+...|...... +...++.+.|..+|+...+. .+.+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688888988898899999999999986532 244455555444 33357777799999998876 46678888889999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047932 401 LCKNGFVLEALELFCAIGNSKYELDI---ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGL 471 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 471 (598)
+...|+.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+. .|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999999865 23222 48999999999999999999999999884 44544444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0017 Score=55.09 Aligned_cols=95 Identities=14% Similarity=-0.036 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL--DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMI 468 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 468 (598)
...+..++..+...|++++|+..|+++......+ ...++..+..++...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555666666677777777777665442121 23456667777777777777777777766531 11234444444
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 047932 469 HGLC-------NDGQMDKAHDLFLD 486 (598)
Q Consensus 469 ~~~~-------~~g~~~~A~~~~~~ 486 (598)
..+. ..|+++.|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 4444 56666655444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0072 Score=56.23 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=57.0
Q ss_pred HHhc-CCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-----CCHH-HHHHHH
Q 047932 366 LFEV-HQVEHALKLFDEMQHN----DVA-ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE-----LDII-SYSCLI 433 (598)
Q Consensus 366 ~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~~l~ 433 (598)
|... |+++.|.+.|.++.+. +.+ .-..++..+...+.+.|++++|..+|+++...... .+.. .+...+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 4344 5666666666555431 100 01234445556666777777777777766543211 1111 223334
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 047932 434 DGLCKIGKLETAWELFQSLSRV--GLLPN--VVTYNIMIHGLCN--DGQMDKAHDLFLDM 487 (598)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 487 (598)
-++...|++..|.+.+++.... ++..+ ......|+.++-. ...++.++.-|+.+
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4556667777777777776543 12212 3344455555542 23344444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.042 Score=49.54 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 326 TLINGYCKTKNVEEALNLYRKMLPK--GIRPTVVTYSTLFLGLFEVHQVEHALKLFDEM 382 (598)
Q Consensus 326 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 382 (598)
.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3445566666666666666666554 11223344555556666666666666655444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.093 Score=52.42 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=93.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCC
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-NINPNVVTYNSLIHCFSHADD 231 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 231 (598)
-|++++|.++|-.|.+++ ..|..+.+.|++-...++++.--.. .-.--..+|+.+...++....
T Consensus 747 ~g~feeaek~yld~drrD---------------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred hcchhHhhhhhhccchhh---------------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 477777777777665543 2345566677776666666532211 000113467777777777778
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 232 WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVS 311 (598)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 311 (598)
|++|.+.|..-.. ....+.++.+..++++-+.+...+ +.+....-.+..++.+.|.-++|.+.|-+
T Consensus 812 We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 8888777755321 123456666666666555444433 33566666777778888877777766644
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 312 MESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
... | ..-+..|...++|.+|.++-+...
T Consensus 878 ~s~----p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 878 RSL----P-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred ccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 321 1 133456667777777777766543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=49.30 Aligned_cols=78 Identities=15% Similarity=0.324 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhhHH
Q 047932 185 NTIIDGVCKEGFVDKAMELFLQMKDENI-NPNVVTYNSLIHCFSHAD--------DWNEAKRLFIKMMDQGVHPNVVTFS 255 (598)
Q Consensus 185 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (598)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ..-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455666666788888888888887777 778888887777765542 2334556666666666666666666
Q ss_pred HHHHHHH
Q 047932 256 VIVDELC 262 (598)
Q Consensus 256 ~l~~~~~ 262 (598)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6666554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.02 Score=47.11 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=84.8
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHH
Q 047932 388 AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN---VVTY 464 (598)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 464 (598)
.|+...-..+..+....|+..+|...|++...--+.-|....-.+.++....+++..|...++.+.+.. |. ..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 456666666777777777777777777777754455567777777777777777777777777776642 21 2334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 465 NIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
..+.+.+...|++..|...|+...+. -|+...-......+.++|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 45667777777777777777777764 4555555555556667776655554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.01 Score=55.25 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMA 167 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (598)
|......|-..|++++|.+.|.+..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 3444455666677777777666654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=48.75 Aligned_cols=78 Identities=19% Similarity=0.384 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047932 431 CLIDGLCKIGKLETAWELFQSLSRVGL-LPNVVTYNIMIHGLCNDG--------QMDKAHDLFLDMEAKGVEPDCVIFNT 501 (598)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~ 501 (598)
..|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 677777777777665432 34456778888888888888888888
Q ss_pred HHHHHHh
Q 047932 502 IMLGFIR 508 (598)
Q Consensus 502 l~~~~~~ 508 (598)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8777654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0055 Score=61.65 Aligned_cols=62 Identities=10% Similarity=0.014 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 461 VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
...|..+...+...|++++|...+++++..+ |+...|..+...+...|+.++|.+ .++++.+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~--~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAAD--AYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Confidence 4455555555555677777777777776654 466666666777777777777777 7766663
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0097 Score=59.93 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhhC
Q 047932 354 PTVVTYSTLFLGLFEV-----HQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN--------GFVLEALELFCAIGNS 420 (598)
Q Consensus 354 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~ 420 (598)
.+...|...+++.... ++...|..+|+++++.. +.....+..+..++... ++...+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 3455555555543321 22456666666666542 22233333333222211 1223334444443322
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047932 421 -KYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIF 499 (598)
Q Consensus 421 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 499 (598)
....+...|..+.......|++++|...++++.+. .|+...|..+...+...|+.++|.+.++++... .|...+|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 12345567777766677778888888888888875 467778888888888888888888888888764 3444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00015 Score=41.15 Aligned_cols=29 Identities=41% Similarity=0.861 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKDEN 211 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 211 (598)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0002 Score=40.65 Aligned_cols=29 Identities=41% Similarity=0.854 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (598)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00038 Score=48.00 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=26.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 433 IDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
...+...|++++|...|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555432 11334444455555555555555555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.02 Score=50.14 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT 153 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (598)
++..+...+..+...|++.+|+..|+++... .|+. +--..+...++.++.+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s--------------------------~~a~~A~l~la~a~y~~ 55 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR--YPNS--------------------------PYAPQAQLMLAYAYYKQ 55 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTS--------------------------TTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC--------------------------hHHHHHHHHHHHHHHHc
Confidence 3344555555566677777777777776654 1211 11123345566677777
Q ss_pred CChhHHHHHHHHHHhcC
Q 047932 154 GHTIVALNLFEEMANGN 170 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~ 170 (598)
|+++.|...++++.+..
T Consensus 56 ~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 56 GDYEEAIAAYERFIKLY 72 (203)
T ss_dssp T-HHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 77777777777777654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=60.51 Aligned_cols=133 Identities=12% Similarity=-0.053 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh----hCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCC-CCCHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIG----NSKYE-LDIISYSCLIDGLCKIGKLETAWELFQSLSR----VGL-LPNVV 462 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 462 (598)
.|..+...|.-.|+++.|+...+.-+ +.|-+ .-...+..+..+++-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555667777666554322 11100 1123456666777777777777776665432 221 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAK-----GVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
+..+|...|.-..++++|+.++.+-+.- ...-....+.+|..+|...|..++|.. +.+...+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~--fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY--FAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHH
Confidence 4445666666666777777766654321 111234566667777777777777776 66655443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.064 Score=44.31 Aligned_cols=131 Identities=13% Similarity=0.180 Sum_probs=89.1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHH
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV-HPNVVTFSV 256 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 256 (598)
-|+......|..++.+.|+..+|...|++...--.--|....-.+..+....+++..|...++++.+... ..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4566666778888888888888888888877644455677777778888888888888888888776531 112344556
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 257 IVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
+.+.+...|++..|...|+..... -|+...-......+.+.|+.+++..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 777888888888888888888775 3444433334444566666555544333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.019 Score=44.73 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHH
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPN--VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH--PNVVTFSVIVDELC 262 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 262 (598)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556667777777776666655433 234445556666667777777766666554111 01122222334555
Q ss_pred hCCCHHHHHHHHHHHH
Q 047932 263 KNGKMEEASRLLDLMI 278 (598)
Q Consensus 263 ~~g~~~~a~~~~~~~~ 278 (598)
..|+.++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666665544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0088 Score=55.50 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=147.6
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHH--hC--CCC----CCHHhH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPV----SSFNILFGCLAKNKHYDTVLSLFKRLN--ST--GLF----PDLYTH 113 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~~~----p~~~~~ 113 (598)
|+-+++.|+...-..+|+.+++.+.. +. .+|..+.++|.-.++|++|++....=+ .+ |-. ...-.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 55678999999999999999987654 33 346677777777788888877653211 00 000 000000
Q ss_pred HHHHhc--cHHHHHHHHHHH----HHcCC-CCCHhhHHHHHHHHHhcCC--------------------hhHHHHHHHHH
Q 047932 114 SILINC--RIMEAAALFTKL----RVFGC-EPDVFTYNTLINGLCRTGH--------------------TIVALNLFEEM 166 (598)
Q Consensus 114 ~~ll~~--~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 166 (598)
...+.. .+++|+..-.+- .+.|- .....++-.|...|...|+ ++.|.+.|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 000110 444444322211 11110 0123455567777766553 12333333322
Q ss_pred HhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 167 ANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD----ENIN-PNVVTYNSLIHCFSHADDWNEAKRLFIK 241 (598)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (598)
++.....|. --.-...|..|...|.-.|+++.|+...+.-.. -|-. .....+..|..+++-.|+++.|.+.|+.
T Consensus 182 L~l~~~lgD-r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 182 LELSEKLGD-RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHhhh-HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 211000000 001123456666667777888888876654332 1211 1234677788888888999988888886
Q ss_pred HHHC----CC-CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 242 MMDQ----GV-HPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI-----GVHPNTFVYNTLMDGFCLTGRVNHAKELFVS 311 (598)
Q Consensus 242 ~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 311 (598)
.... |- ......+.+|...|.-..++++|+.++.+-+.. +..-....+..|..+|...|..++|....+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5432 21 123345666777777777888888777654332 1122455777888888888888888776655
Q ss_pred HH
Q 047932 312 ME 313 (598)
Q Consensus 312 ~~ 313 (598)
-.
T Consensus 341 hl 342 (639)
T KOG1130|consen 341 HL 342 (639)
T ss_pred HH
Confidence 43
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00076 Score=47.00 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=36.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 151 CRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+.|++++|+++|+.+.... |.+...+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777777777777664 446666667777777777777777777777664
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.017 Score=51.87 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCC
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG---FVDKAMELFLQMKDENINP 214 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~ 214 (598)
.|...|-.|..+|...|++..|...|.+..+.. +++...+..+..++.... ...++.++|+++...+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~- 225 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA- 225 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-
Confidence 366667777777777777777777777766654 455555555555544332 244666666666665322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 215 NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
|+.+...|...+...|++.+|...|+.|++.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555566666666667777777776666665
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.03 Score=49.21 Aligned_cols=61 Identities=21% Similarity=0.146 Sum_probs=50.2
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSP-PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL 106 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 106 (598)
|...++.|++++|...|+.+...+|.. -...+..-++.++.+.+++++|+..+++.+..-.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 344678999999999999999998873 3455677778888899999999999999887743
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.074 Score=52.59 Aligned_cols=56 Identities=18% Similarity=0.052 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 286 TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 286 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
..+...+..-+.+...+..|.++|..|-.. ..++..+...++|++|..+-++..+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc
Confidence 334444445555666777778888776532 34567777888888888887776553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.051 Score=47.64 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
+-..+..+...|++.+|...|+.+....+. .+--......++.++.+.|+++.|...+++....
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455566777788888888777765421 0112344556667777777777777777776654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.016 Score=45.17 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=46.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYELD--IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN----VVTYNIMIHGL 471 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~ 471 (598)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++..... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3445555666666666666665543322 2344455566666666666666666665431 22 11111223344
Q ss_pred HhcCCHHHHHHHHHHHH
Q 047932 472 CNDGQMDKAHDLFLDME 488 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~ 488 (598)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666665544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00074 Score=47.22 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG-QMDKAHDLFLDMEA 489 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 489 (598)
..+|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555555555666666666666555532 113445555555555555 45566655555544
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=46.19 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=39.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG-FVDKAMELFLQMKD 209 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~ 209 (598)
..+|..++..+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666666666666666666666654 344556666666666666 56666666666554
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=46.61 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=54.1
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 112 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 112 (598)
.+.+.+++++|.++++.++..+|. ++..|...+..+.+.|++++|...|+++++. .|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 456889999999999999999987 8999999999999999999999999999977 455443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.21 Score=47.50 Aligned_cols=441 Identities=13% Similarity=0.121 Sum_probs=234.9
Q ss_pred cccccCCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHhc--
Q 047932 47 QGDINLITPNEALCIFDYMLRMHPSPPP----VSSFNILFGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINC-- 119 (598)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~-- 119 (598)
-.+.+++++.+|.++|.++...-...|. -...+.++++|..+ +.+..........+. |..+-...+..+...
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 3456889999999999998765433111 12244667777643 444444444333332 323434444444443
Q ss_pred -cHHHHHHHHHHHHHc--CCCC------------CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHH
Q 047932 120 -RIMEAAALFTKLRVF--GCEP------------DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTY 184 (598)
Q Consensus 120 -~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (598)
.+..|++.+...... +..+ |...-+..+..+...|++.+++.+++++...--. -.+.-+..+|
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk--rE~~w~~d~y 170 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK--RECEWNSDMY 170 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh--hhhcccHHHH
Confidence 677777776655443 2121 1122245677888999999999999988765300 0023678888
Q ss_pred HHHHHHHHhcC--------C-------HHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 047932 185 NTIIDGVCKEG--------F-------VDKAMELFLQMKDE------NINPNVVTYNSLIHCFSH--ADDWNEAKRLFIK 241 (598)
Q Consensus 185 ~~li~~~~~~g--------~-------~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~ 241 (598)
+.++-.+++.= . ++.+.-...+|... .+-|.......++....- .....--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 88665554421 1 11122222222211 122222222222222211 1122222333333
Q ss_pred HHHCCCCCCHh-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 242 MMDQGVHPNVV-TFSVIVDELCKNGKMEEASRLLDLMIQIGVH----PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 242 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
....-+.|+.. ....+...+.+ +.+++..+-+.+....+. .-..++..++....+.++...|.+.+.-+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 33333455533 22233333333 455555555444433211 123467788888889999999999888776653
Q ss_pred CCCChhhH-------HHHHHHHHh----cCCHHHHHHHHHHHccCCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHHH
Q 047932 317 CMHDVVSY-------TTLINGYCK----TKNVEEALNLYRKMLPKGIRPTVVTYSTLFL---GLFEVHQ-VEHALKLFDE 381 (598)
Q Consensus 317 ~~~~~~~~-------~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~-~~~a~~~~~~ 381 (598)
|+...- ..+-+..+. .-+...-+.+|......++. .......++. -+=+.|. -++|+.+++.
T Consensus 329 --p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 329 --PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 222211 122223331 11233445555555544332 1112222222 2223444 8899999999
Q ss_pred HhhCCCCcCHHHHHHHH----HHHHH---cCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHH--HHHcCCHHHHHHH
Q 047932 382 MQHNDVAADTYIYNTFI----DGLCK---NGFVLEALELFCAIGNSKYELD----IISYSCLIDG--LCKIGKLETAWEL 448 (598)
Q Consensus 382 ~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~ 448 (598)
+.+.. +.|...-|.+. .+|.+ ...+.+-..+-+-+.+.|++|- ...-|.|..+ +..+|++.++.-.
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 88753 33443333322 22222 2233333444344445565543 3344555443 5578999999887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 449 FQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 449 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
-..+.+ +.|++.+|..++-+.....++++|..++..+ ||+..++++-+
T Consensus 485 s~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 485 SSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 777776 6899999999999999999999999999754 77777766543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.23 Score=46.66 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 472 (598)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++..++... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44455666777888888887766654 46888888888888888888887776432 123466888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+.|+..+|..+..++ ++ ..-+..|.+.|++.+|.+
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHH
Confidence 888888888888762 21 345566788888888777
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.24 Score=46.18 Aligned_cols=119 Identities=8% Similarity=0.035 Sum_probs=57.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC-CCCC-CHHHHHHHHHHHHhcCC
Q 047932 294 DGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK-GIRP-TVVTYSTLFLGLFEVHQ 371 (598)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 371 (598)
.++.+.|+..++-.+++.+-+.. |.+..+. +..+.+.|+. ++.-+++.... ..+| +......+.++-...|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 55566666666666666665553 2222221 2223334432 22222211110 0112 34444555555566666
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhC
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCK-NGFVLEALELFCAIGNS 420 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 420 (598)
+..|..--+...+. .|....|..|.+.-.. .|+-.++..++.+..+.
T Consensus 345 ~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 345 FSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 66666555554443 4555556555554433 36777777776666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0074 Score=53.42 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=73.6
Q ss_pred cccCCChHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSP-PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
+++.|+|..|...|...++..|.. ..+.++..|...+..+|++++|...|..+.+. .|+.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s----------------- 211 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKS----------------- 211 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCC-----------------
Confidence 456788888888888888888762 34557778888888888888888888888765 2321
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
+.-...+..|..+..+.|+.++|..+|+++.++.
T Consensus 212 ---------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 212 ---------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ---------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 2234677888899999999999999999999875
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.21 Score=43.89 Aligned_cols=132 Identities=8% Similarity=0.054 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH-----HHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV-----YNTL 292 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~l 292 (598)
+.+.++.++.-.|.+.-...++.++++...+.++.....+++.-.+.|+.+.|...|++..+..-..|... ....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666677777777778888877766566677777777777788888888888876655422222222 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 293 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
...|.-.+++..|...+.++...+ +.++...|.-.-+..-.|+...|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455566666666666666543 334444444444444456677777777777665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.012 Score=53.34 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEAKG--VEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
+..++.+|...|++++|+..|+.+++.- -+.....+..++.++...|+.++|.+ .++++++
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~--~~~~vi~ 245 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKA--VYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHH--HHHHHHH
Confidence 3344444444455555555554444321 01112333333444444444555544 4444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.024 Score=48.40 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 478 DKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 478 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
+-|++++++|...|+-||..++..++..+.+.+
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 456666666666666666666666666664444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.2 Score=47.48 Aligned_cols=29 Identities=7% Similarity=-0.028 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 497 VIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
-.+..++.++.-.|+.++|.+ .+++|.+.
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~--a~e~~~~l 334 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQ--AAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHhhc
Confidence 344566677777888888888 88887744
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.014 Score=49.68 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=59.2
Q ss_pred CCHhHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 047932 179 PDTVTYNTIIDGVCKE-----GFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVT 253 (598)
Q Consensus 179 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (598)
.+-.+|..+++.+.+. |..+=....+..|.+-|+.-|..+|+.|++++=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 4566677777766643 5566666777778888888888888888877543 2211 000 0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCC
Q 047932 254 FSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGR 301 (598)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 301 (598)
+..+..-| -.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 11234466666666666666666666666666655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.43 Score=45.41 Aligned_cols=131 Identities=20% Similarity=0.193 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 356 VVTYSTLFLGLFEVHQVEHALKLFDEMQHND-VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLID 434 (598)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 434 (598)
..+|...+....+....+.|..+|-++.+.+ +.++..++++++..++ .|+..-|..+|+.-... ++.+..--+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4556666666666666666777776666665 4455666666665443 45666666666654432 1222222344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPN--VVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.+...++-+.|..+|+..... +..+ ...|..++.--..-|+...+..+=++|..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 566666666666666644332 1112 34566666666666666666666666655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.024 Score=51.50 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI--NPNVVTYN 220 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ 220 (598)
|...+..+.+.|++++|+..|+.+.+..++. .-....+.-+...|...|++++|...|+.+...-. +.....+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s----~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDS----TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3333333344555555555555555543100 00013444455555555555555555555554210 11222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
.+..++...|+.++|..+|+.+++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444555555555555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.065 Score=44.16 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA-----KGVEPDCVIFN 500 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 500 (598)
+...++..+...|++++|..+++.+.... +-+...|..++.+|...|+..+|+++|+++.. .|++|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556667778888888888888887753 33567788888888888888888888887753 37888876644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0019 Score=46.51 Aligned_cols=69 Identities=23% Similarity=0.296 Sum_probs=50.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD-TVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
..+++.+...|...|++++|+..|++..+.....|. -.++ ..++..+...+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357889999999999999999999998764211111 1222 56778888888888999988888887654
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.19 Score=49.84 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV--------- 462 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------- 462 (598)
.+...+...+.+...+.-|-++|.+|-+. ..+++.....+++.+|..+.++..+ +.|++.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhh
Confidence 34444444445555555566666555422 2344555556666666666655544 233321
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 463 --TYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 463 --~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
-|...-.+|.++|+..+|..+++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122223456667777777777777654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.16 Score=41.66 Aligned_cols=90 Identities=11% Similarity=-0.088 Sum_probs=58.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQM 477 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 477 (598)
..-+...|++++|..+|+-+.-.+ .-+..-|..|..++-..+++++|+..|......+. -|...+.....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 334456777777777777666544 23555666777777777777777777776655432 2344455566777777777
Q ss_pred HHHHHHHHHHHH
Q 047932 478 DKAHDLFLDMEA 489 (598)
Q Consensus 478 ~~A~~~~~~~~~ 489 (598)
+.|+..|+..+.
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777777777766
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.13 Score=46.19 Aligned_cols=139 Identities=17% Similarity=0.079 Sum_probs=88.5
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH---HHHhc--cHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS---ILINC--RIME 123 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~ll~~--~~~~ 123 (598)
+...|++.+|...|+.++...|. +..+-..++..|...|+.+.|..++..+....-........ .++.. ...+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 56899999999999999999887 77888999999999999999999999876542111111100 01100 1111
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF 196 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 196 (598)
...+-.+.... +.|...-..+...+...|+.+.|.+.+-.+.+++.. -.|...-..++..+.-.|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-----~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG-----FEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-----ccCcHHHHHHHHHHHhcCC
Confidence 12222222221 225566667777788888888888877777766521 2344555556655555553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.14 Score=41.96 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=63.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (598)
.-+...|++++|..+|.-+...+ +-+...+..|..++-..+++++|+..|......+ .-|+..+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 33456788888888887777654 3456666777777777888888888887665443 234555556777888888888
Q ss_pred HHHHHHHHHHh
Q 047932 444 TAWELFQSLSR 454 (598)
Q Consensus 444 ~A~~~~~~~~~ 454 (598)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888887776
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.4 Score=42.21 Aligned_cols=132 Identities=15% Similarity=0.103 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-----
Q 047932 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL----- 327 (598)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 327 (598)
..+.++.++.-.|.+.-....+.++++...+.++.....|++...+.||.+.|...|++..+..-..+..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566666777777777777777777665667777777777777788888887777766654323333333322
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN 385 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 385 (598)
...|.-++++..|...+.++...+.. +....+.-.-+..-.|+..+|.+.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22344455666666666665554322 3333343333444455666666666666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.67 Score=44.23 Aligned_cols=437 Identities=10% Similarity=0.071 Sum_probs=219.2
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHHHHHHHHHHcC
Q 047932 61 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAALFTKLRVFG 135 (598)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~~~~~~~~~~~ 135 (598)
.++.-++.+|. +..+|..+++.+..+|.+++.++.++++...- .--+..|...+.. ++.....+|.+.+...
T Consensus 30 rLRerIkdNPt--nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPT--NILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCch--hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 34444566666 99999999999999999999999999998531 1123345555553 6777777887777653
Q ss_pred CCCCHhhHHHHHHHHHhcC-----Ch-hHHHHHHHHHHhcCCCCccccCC-CHhHHHHHHH---HHH------hcCCHHH
Q 047932 136 CEPDVFTYNTLINGLCRTG-----HT-IVALNLFEEMANGNGEFGVVCKP-DTVTYNTIID---GVC------KEGFVDK 199 (598)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g-----~~-~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~---~~~------~~g~~~~ 199 (598)
.+...|...+.--.+.+ +- ..-.+.|+-...-- . +.| ....|+..+. ..- .+.++|.
T Consensus 107 --l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~-~----~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~ 179 (660)
T COG5107 107 --LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCA-I----FEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179 (660)
T ss_pred --ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcc-c----ccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence 34566666655333332 11 11223333333210 0 112 2333433332 222 2334555
Q ss_pred HHHHHHHHhhCCCCCCHHHHH------HHHHHHH---hcC----CHHHHHHHHHHHHH--CCCC--------------C-
Q 047932 200 AMELFLQMKDENINPNVVTYN------SLIHCFS---HAD----DWNEAKRLFIKMMD--QGVH--------------P- 249 (598)
Q Consensus 200 A~~~~~~~~~~~~~~~~~~~~------~l~~~~~---~~~----~~~~a~~~~~~~~~--~~~~--------------~- 249 (598)
....+.+|....+..=...|+ .=+.-.. -.| -+-.|...++++.. .|.. .
T Consensus 180 iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 566666666532110011111 1111000 011 13345555554432 1211 0
Q ss_pred CHhhHHHHHHHHHhC-----CC-HH-HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 047932 250 NVVTFSVIVDELCKN-----GK-ME-EASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVV 322 (598)
Q Consensus 250 ~~~~~~~l~~~~~~~-----g~-~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 322 (598)
...-|...|..-... |+ .. ..--++++.... +.-....|.---.-+...++-+.|......-... .+.
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~----sps 334 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM----SPS 334 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC----CCc
Confidence 011233333322211 11 11 222233443332 2223444444444455667777777665543332 222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 047932 323 SYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF---EVHQVEHALKLFDEMQHNDVAADTYIYNTFID 399 (598)
Q Consensus 323 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 399 (598)
.-..+...|.-.++.+.....|++..+. ...-...+.+-+ ..|+++.-.+++-.-. ..-..+|...++
T Consensus 335 L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N 405 (660)
T COG5107 335 LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLN 405 (660)
T ss_pred hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHH
Confidence 2223334444455555555555554321 000000111111 1233322222221111 123456666777
Q ss_pred HHHHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCH
Q 047932 400 GLCKNGFVLEALELFCAIGNSK-YELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV-TYNIMIHGLCNDGQM 477 (598)
Q Consensus 400 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 477 (598)
+..+....+.|..+|-++.+.+ ..+++.++++++..++ .|+...|..+|+--... .||.. --+-.+..+..-++-
T Consensus 406 ~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde 482 (660)
T COG5107 406 YVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDE 482 (660)
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcH
Confidence 7777777888888888887776 4566777777777554 46777788888765543 23433 334556666777888
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 478 DKAHDLFLDMEAKGVEPD--CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 478 ~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
..|..+|+..+.+ +..+ ...|..++..-..-|+...+.. +=+.+...
T Consensus 483 ~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~s--Le~rf~e~ 531 (660)
T COG5107 483 ENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYS--LEERFREL 531 (660)
T ss_pred HHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHh--HHHHHHHH
Confidence 8888888866543 2223 4567777777777777777666 66666554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.013 Score=41.33 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=35.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 148 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+|.+.++++.|.++++.+...+ |.+...|......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666666666666666666654 445566666666666666666666666666654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.3 Score=42.47 Aligned_cols=206 Identities=13% Similarity=0.088 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 047932 75 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG 154 (598)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 154 (598)
...|..-..+|....++++|...+.++.+. ...+...|+..- .++.|.-+..++.+. +--+..|+.....|..+|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAK--ayEqaamLake~~kl--sEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAK--AYEQAAMLAKELSKL--SEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHH--HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC
Confidence 344556666777778888888888877642 122222222111 456666666666654 112345677778888888
Q ss_pred ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC---C--CCCCHHHHHHHHHHHHhc
Q 047932 155 HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE---N--INPNVVTYNSLIHCFSHA 229 (598)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~ 229 (598)
.++.|...+++.-+. .++.++++|+++|++.... + ...-...+....+.+.+.
T Consensus 106 spdtAAmaleKAak~----------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKA----------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred CcchHHHHHHHHHHH----------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 888887777766442 2334555666665554321 0 011122333344455555
Q ss_pred CCHHHHHHHHHHHHHCC----CCCCH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCcCHHHHHHHHHHHHhcCC
Q 047932 230 DDWNEAKRLFIKMMDQG----VHPNV-VTFSVIVDELCKNGKMEEASRLLDLMIQIG---VHPNTFVYNTLMDGFCLTGR 301 (598)
Q Consensus 230 ~~~~~a~~~~~~~~~~~----~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~ 301 (598)
..+++|-..+.+-.... --++. ..|...+-.+.-..++..|.+.++.--+.+ -.-+..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 55555554443322110 01111 122333334444455666666665544332 112333444444444 3455
Q ss_pred HHHHHHH
Q 047932 302 VNHAKEL 308 (598)
Q Consensus 302 ~~~a~~~ 308 (598)
.+++..+
T Consensus 243 ~E~~~kv 249 (308)
T KOG1585|consen 243 IEEIKKV 249 (308)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.012 Score=48.61 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD-----ENINPNV 216 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 216 (598)
+...++..+...|+++.|..+.+.+...+ |-|...|..+|.+|...|+...|.+.|+.+.. .|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 45667778888999999999999998876 66788899999999999999999998887753 3777776
Q ss_pred HHH
Q 047932 217 VTY 219 (598)
Q Consensus 217 ~~~ 219 (598)
.+-
T Consensus 137 ~~~ 139 (146)
T PF03704_consen 137 ETR 139 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.87 Score=45.28 Aligned_cols=185 Identities=12% Similarity=0.004 Sum_probs=106.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 047932 320 DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFID 399 (598)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 399 (598)
+..+|...+..-...|+++.+.-+|++..-. +..-...|-..+.-....|+.+-+..++....+..++..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4556777777777888888888888876542 111222333344444445888888777777666543333333222222
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHH----H-H
Q 047932 400 GLCKNGFVLEALELFCAIGNSKYELDII-SYSCLIDGLCKIGKLETAW---ELFQSLSRVGLLPNVVTYNIMI----H-G 470 (598)
Q Consensus 400 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~----~-~ 470 (598)
..-..|++..|..+++.+...- |+.. .-..-+....+.|..+.+. .++...... .-+......+. + .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHH
Confidence 3445678888888888887653 3432 2233345556677777776 333333221 11211122221 1 1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23457888888888888875 4777777888777766554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.60 E-value=1.1 Score=46.31 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=106.7
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-cHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-RIMEAAALFT 129 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~a~~~~~ 129 (598)
+..-++-|+.+-..- ..++. .-.......+..+.+.|++++|.+.|-+.+.. +.|. ......+.+ ++.+-..+++
T Consensus 346 kK~ly~~Ai~LAk~~-~~d~d-~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-~Vi~kfLdaq~IknLt~YLe 421 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQ-HLDED-TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-EVIKKFLDAQRIKNLTSYLE 421 (933)
T ss_pred HhhhHHHHHHHHHhc-CCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-HHHHHhcCHHHHHHHHHHHH
Confidence 344455666554332 11111 12234556677778999999999999888753 2333 333333444 7777778888
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 130 KLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|. . ..-....+..+.+.+-.++|.-+-.....
T Consensus 422 ~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~-----~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 422 ALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGE-----W---FFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccc-----e---eeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 88887754 55566789999999999988777766554 220 1 11245567777778888888776655443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 210 ENINPNVVTYNSLIHCFSHADDWNEAKRLFIKM 242 (598)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (598)
+...... .+-..+++++|++.+..+
T Consensus 492 -----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 -----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred -----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 2333332 344578899999888765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.25 Score=44.97 Aligned_cols=158 Identities=12% Similarity=0.023 Sum_probs=108.5
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+-..|+..+|...++++++..|. +.-++.-.=.++.-+|+...-...+++++..- .+|...
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~---------------- 173 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPC---------------- 173 (491)
T ss_pred hhccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcH----------------
Confidence 34578888888889999888886 88888888888888888888888888776431 121111
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
-..+...+.-++...|-+++|.+.-++..+.+ +.|.....++...+-..|++.++.+...+-.
T Consensus 174 ----------~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 174 ----------YSYVHGMYAFGLEECGIYDDAEKQADRALQIN-------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred ----------HHHHHHHHHhhHHHhccchhHHHHHHhhccCC-------CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 11222334445667899999999999988877 6778888888888888999999888776544
Q ss_pred hCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 209 DENINP---NVVTYNSLIHCFSHADDWNEAKRLFIKM 242 (598)
Q Consensus 209 ~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (598)
..--.- -..-|-...-.+...+.++.|+++|+.-
T Consensus 237 d~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 237 DDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred cchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 320000 1112223344566678888888888753
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.88 Score=43.35 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
+.+-+.+++.++.-.|++++|.+.+++|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 334444445555555555555555555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=41.95 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRV----GLL-PN-VVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555554321 100 11 2344555555555555555555555544
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.038 Score=43.98 Aligned_cols=119 Identities=10% Similarity=0.051 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 047932 431 CLIDGLCKIGKLETAWELFQSLSRVGLLP--NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDC--VIFNTIMLGF 506 (598)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~ 506 (598)
.-.....+.|++++|.+.|+.+...-... ....-..++.+|.+.|++++|+..+++.++.. |+. .-|...+.++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh--P~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH--PTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCCCccHHHHHHHH
Confidence 33444556677777777777776531111 12344556667777777777777777777652 221 2233333333
Q ss_pred HhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCCCCChhhHHHhhhcCccccchhh
Q 047932 507 IRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDMSPGDTMFSTALLMDPDCSCDLE 571 (598)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~ 571 (598)
......+ . .+..+... .-|. +....|...|+.++...|++..+-+
T Consensus 93 ~~~~~~~---~--~~~~~~~~-----drD~----------~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 93 SYYEQDE---G--SLQSFFRS-----DRDP----------TPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHhh---h--HHhhhccc-----ccCc----------HHHHHHHHHHHHHHHHCcCChhHHH
Confidence 2222211 1 22222211 1111 1234677889999999999887654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.93 Score=40.16 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=91.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDEN--INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN 264 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (598)
=+..-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|+..+++.+..-......-|...+.+++..
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 3444567788888888888888652 12234456667777888888888888888887753222223344444444421
Q ss_pred -------CCHH---HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047932 265 -------GKME---EASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT 334 (598)
Q Consensus 265 -------g~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 334 (598)
.+.. .|..-|+.+++. -||+. =...|..-+..+... =...=..+.+.|.+.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr 180 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKR 180 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 1111 233333333332 11110 001111111111100 000112345667777
Q ss_pred CCHHHHHHHHHHHccCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 335 KNVEEALNLYRKMLPKGIRPT---VVTYSTLFLGLFEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 335 ~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (598)
|.+-.|..-++.|.+. .+-. ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 181 ~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 181 GAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 7777777777777765 1111 23344555666666666666665544443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.084 Score=50.78 Aligned_cols=66 Identities=14% Similarity=-0.066 Sum_probs=52.2
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047932 388 AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD-I---ISYSCLIDGLCKIGKLETAWELFQSLSRV 455 (598)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (598)
+.+...++.+..+|.+.|++++|+..|++.+... |+ . .+|..+..+|...|++++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4457778888888888888888888888888764 33 2 35788888888888888888888888874
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.01 Score=34.23 Aligned_cols=32 Identities=13% Similarity=0.403 Sum_probs=29.4
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047932 62 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVL 95 (598)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 95 (598)
|+++++.+|. ++.+|+.++..|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 6788888887 9999999999999999999986
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.059 Score=50.49 Aligned_cols=59 Identities=3% Similarity=-0.147 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
++.+..+|.+.+++..|++...+.+..+ ++|......-..+|...|+++.|+. .|+++.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~--df~ka~ 318 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARD--DFQKAL 318 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHH--HHHHHH
Confidence 4445555555555555555555555554 4455555555555555555555555 555555
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.14 Score=40.45 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=46.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC---------CCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---------EFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
|..++.+++.++++.|+.+....+++..-..+. ..+....|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788899999999999998888876543221 01111234444444444444444444444444444433
Q ss_pred C-CCCCCHHHHHHHHH
Q 047932 210 E-NINPNVVTYNSLIH 224 (598)
Q Consensus 210 ~-~~~~~~~~~~~l~~ 224 (598)
. +++.+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 2 33333444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.25 Score=47.65 Aligned_cols=66 Identities=17% Similarity=-0.001 Sum_probs=53.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT---VTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+...++.+..+|.+.|++++|+..|++.++.+ +.+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356678888999999999999999999988865 2223 35888899999999999999999888874
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.93 E-value=1 Score=39.32 Aligned_cols=85 Identities=16% Similarity=0.202 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (598)
.|.--..+|-..+++++|...+.+..+. ...+...|. .. ..++.|.-+.+++.+. .--...|+-....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444445555666666666655555431 121221111 11 1233344444444332 112223444455566
Q ss_pred hcCCHHHHHHHHHHH
Q 047932 298 LTGRVNHAKELFVSM 312 (598)
Q Consensus 298 ~~g~~~~a~~~~~~~ 312 (598)
..|..+.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 666666555555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.25 Score=46.55 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 047932 188 IDGVCKEGFVDKAMELFLQMKDE-----NINP---------NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVT 253 (598)
Q Consensus 188 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (598)
...|.+.|++..|...|++.... +.++ -..++..|.-+|.+.+++..|++..++.+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45678889999998888886542 1111 12234445555555555555555555555542 334444
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 254 FSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
...-..++...|+++.|+..|+++++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444455555555555555555555553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.83 Score=44.30 Aligned_cols=111 Identities=18% Similarity=0.101 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047932 155 HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNE 234 (598)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 234 (598)
+..+|.++-++..+.+ +.|......+..+..-.++++.|..+|++....+.. ...+|........-.|+.++
T Consensus 319 ~~~~a~~~A~rAveld-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 319 AAQKALELLDYVSDIT-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred HHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 4456677777777766 667777777777777777788888888888775322 44566666666677888888
Q ss_pred HHHHHHHHHHCCCCCCH---hhHHHHHHHHHhCCCHHHHHHHHHH
Q 047932 235 AKRLFIKMMDQGVHPNV---VTFSVIVDELCKNGKMEEASRLLDL 276 (598)
Q Consensus 235 a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~ 276 (598)
|.+.+++..+. .|.. ......+..|+..+ ++.+++++-+
T Consensus 391 a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 391 ARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 88888886654 2322 22333334555443 5556665543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.26 Score=38.90 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 047932 457 LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK-GVEPDCVIFNTIMLGFIRN 509 (598)
Q Consensus 457 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~ 509 (598)
..|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|+.-....
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 4567777777777777778888888777777654 6666677777777654433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.069 Score=41.18 Aligned_cols=98 Identities=16% Similarity=0.037 Sum_probs=71.1
Q ss_pred cccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHH
Q 047932 47 QGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAA 126 (598)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~ 126 (598)
..+...|+++.|++.|.+++..-|. ++.+||.-.+++.-+|+.++|++-+++.++..- +...+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trt-------------- 113 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRT-------------- 113 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchH--------------
Confidence 3456789999999999999998887 889999999999999999999999998886521 11111
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 047932 127 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 173 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 173 (598)
-..+|..-...|...|+.+.|..=|+...+.|..|
T Consensus 114 ------------acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 114 ------------ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred ------------HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 11223334455666777777777777766665443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=46.04 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=47.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCc
Q 047932 437 CKIGKLETAWELFQSLSRVGLLP--NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK-GV-EPDCVIFNTIMLGFIRNNET 512 (598)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~ 512 (598)
.+.|++..|...|...++....- ....+..|..++...|+++.|..+|..+.+. +- +--++.+..|..+..+.|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 34455666666666655532110 1223334566666666666666666666543 11 11235555566666666666
Q ss_pred cccchhHHHHHHHhc
Q 047932 513 SKSSRGKLMSQMSSC 527 (598)
Q Consensus 513 ~~A~~~~~~~~~~~~ 527 (598)
++|.. .++++++.
T Consensus 232 d~A~a--tl~qv~k~ 244 (262)
T COG1729 232 DEACA--TLQQVIKR 244 (262)
T ss_pred HHHHH--HHHHHHHH
Confidence 66666 66666655
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.39 Score=48.21 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK----EGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
..++....=.||-+.+++.+....+.++-.+....--.-.|..++..++. ....+.|.++++.+... -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34445555567777777777766553321100000011123333332222 23345555555555543 2333333
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHH
Q 047932 220 N-SLIHCFSHADDWNEAKRLFIKMM 243 (598)
Q Consensus 220 ~-~l~~~~~~~~~~~~a~~~~~~~~ 243 (598)
. .-.+.+...|++++|++.|++..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 2 22334444555555555555433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.93 Score=45.56 Aligned_cols=160 Identities=21% Similarity=0.128 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHccCC-CCCCH------HHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCcCHHH
Q 047932 325 TTLINGYCKTKNVEEALNLYRKMLPKG-IRPTV------VTYSTLFLGLF----EVHQVEHALKLFDEMQHNDVAADTYI 393 (598)
Q Consensus 325 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~------~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~ 393 (598)
..++....-.|+-+.+++.+....+.+ +. .+ ..|..++..+. ...+.+.|.+++..+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344455555566666666666554431 11 11 11222222222 245678888888888876 344443
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 394 Y-NTFIDGLCKNGFVLEALELFCAIGNSK---YELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 394 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
| ..-.+.+...|++++|++.|+...... .+.....+--++.++....++++|...|..+.+.. .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 3 344566777899999999998765321 11233456667788888999999999999998853 223344444333
Q ss_pred -HHHhcCCH-------HHHHHHHHHHH
Q 047932 470 -GLCNDGQM-------DKAHDLFLDME 488 (598)
Q Consensus 470 -~~~~~g~~-------~~A~~~~~~~~ 488 (598)
++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33467777 88888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.79 E-value=2.1 Score=41.80 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=61.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc----cHHHHHHHHHHHHHcCC------------------------CC
Q 047932 87 KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----RIMEAAALFTKLRVFGC------------------------EP 138 (598)
Q Consensus 87 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~a~~~~~~~~~~~~------------------------~~ 138 (598)
+..+++.-+++-+++++. .||-.+...++.. .+.++.+++++..+.|- .+
T Consensus 180 RERnp~aRIkaA~eALei--~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--NPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--hhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 445555555566666543 4555555555554 46666666666554310 00
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
-..+-..+..++.+.|+.++|++.|+++.+..+ ...+......|+..+...+.+.++..++.+..+
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-----~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-----NLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-----ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 011223344555566666666666666655431 011233555666666666666666666666543
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.37 Score=47.57 Aligned_cols=99 Identities=21% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
..+.|+++.|.++.++. .+...|..|.....++|+++-|.+.|.+... +..++-.|...|+.+..
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 34455555555443322 1344555555555555555555555554432 23333444455555555
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047932 376 LKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFC 415 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 415 (598)
.++.+.....| -++....++...|+.+++.+++.
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 55554444443 12223333344455555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.5 Score=39.64 Aligned_cols=148 Identities=14% Similarity=0.113 Sum_probs=85.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 148 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFS 227 (598)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (598)
......|++..|..+|....... +.+...-..++.+|...|+.+.|..++..+...--.........-+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 44567788888888888877765 34456666778888888888888888887765421111112112233333
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHHhcCCHHH
Q 047932 228 HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV-HPNTFVYNTLMDGFCLTGRVNH 304 (598)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~ 304 (598)
+.....+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.++..+. .-|...-..++..+...|..+.
T Consensus 215 qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 215 QAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 333333333333333321 22555555677777778888887776666655421 2244555566666655554333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.14 Score=40.88 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=50.6
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSP-PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL 106 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 106 (598)
..++.|++++|.+.|+.+....|.. -...+-..++.++.+++++++|+..+++.++...
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3467899999999999999988873 3556778899999999999999999999998743
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.68 Score=45.02 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLP-NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
..+-..+..++.+.|+.++|++.+++|.+..... +......|+.++...+.+.++..++.+--+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3344567777778888888888888887642211 2335567888888888888888888876543
|
The molecular function of this protein is uncertain. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.61 E-value=3.2 Score=42.59 Aligned_cols=342 Identities=13% Similarity=0.081 Sum_probs=170.5
Q ss_pred cCCCCCHhhHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH--HHHHHHHHH
Q 047932 134 FGCEPDVFTYN-----TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV--DKAMELFLQ 206 (598)
Q Consensus 134 ~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~ 206 (598)
.|++.+..-|. .++.-+...+.+..|+++-..+.... .. ....|......+.+..+. +++.+.+++
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~------~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~ 498 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE------SQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDE 498 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc------cc-ccHHHHHHHHHHHhccCccchHHHHHHHH
Confidence 35555554444 34666777788888888877765432 11 145666666666665321 222222222
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 207 MKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH----PNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
=.+... -....|..+.+-....|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+.+.-
T Consensus 499 kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~- 576 (829)
T KOG2280|consen 499 KLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL- 576 (829)
T ss_pred HhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-
Confidence 222111 24456777777777888888888777542211100 001112222333333444444333333333210
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-ccC-CCCCCHHHHH
Q 047932 283 HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKM-LPK-GIRPTVVTYS 360 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~ 360 (598)
+... .+....+...|..+|.+..+.. +. ..+-..|....+...+-.+.-+- ... -+.+-.....
T Consensus 577 --~~s~------l~~~l~~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk 642 (829)
T KOG2280|consen 577 --NRSS------LFMTLRNQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK 642 (829)
T ss_pred --HHHH------HHHHHHhchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH
Confidence 1111 1111233445555555544421 11 11112222222222221111111 000 0111122222
Q ss_pred HHHHHHHhcCCH----------HHHHHHHHHHhh-CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 361 TLFLGLFEVHQV----------EHALKLFDEMQH-NDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429 (598)
Q Consensus 361 ~l~~~~~~~~~~----------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 429 (598)
.....+.+.... .+-+.+.+.+.. .+..-...+.+--+.-+...|+..+|.++-.+.. -||-..|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 333344433321 112222222221 1222233344555566777888888888877665 4677788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRN 509 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 509 (598)
-.-+.+++..+++++-+++-+.... +.-|...+.+|.+.|+.++|.+++-+... .. -...+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHh
Confidence 8888888888998887777665432 34566788889999999999988865532 11 456778888
Q ss_pred CCccccch
Q 047932 510 NETSKSSR 517 (598)
Q Consensus 510 g~~~~A~~ 517 (598)
|++.+|.+
T Consensus 784 ~~~~eAad 791 (829)
T KOG2280|consen 784 GDVKEAAD 791 (829)
T ss_pred ccHHHHHH
Confidence 88888777
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.1 Score=41.53 Aligned_cols=236 Identities=12% Similarity=0.040 Sum_probs=126.3
Q ss_pred cccCCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPS-PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
+..+.++++|+..+.+-+..-.+ -.....+..+..+..+.|.+++++..--..+ +-|.+.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi-------------------~~a~~~ 76 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQI-------------------DTAREL 76 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHH-------------------HHHHHH
Confidence 45666777777777666543211 0123344555566666666665443322111 111111
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
-+.. .-..+|..+...+.+.-++.+++.+-..-....+.-.. ..-.....++..++.-.+.++++++.|+..
T Consensus 77 ~ds~------~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A 148 (518)
T KOG1941|consen 77 EDSD------FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQVSLSMGNAHLGLSVFQKALESFEKA 148 (518)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccchhhhhHHHHhhhHHHHHHHHHHHHHH
Confidence 1111 12345667777777777777887776665544321000 011233445666777777888888888877
Q ss_pred hhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHh-hH-----HHHHHHHHhCCCHHHHHH
Q 047932 208 KDEN-----INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ----GVHPNVV-TF-----SVIVDELCKNGKMEEASR 272 (598)
Q Consensus 208 ~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-~~-----~~l~~~~~~~g~~~~a~~ 272 (598)
..-. ......++..|...|....|+++|.-+..+..+. ++. |.. -| ..+.-++...|....|.+
T Consensus 149 ~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 149 LRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred HHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 6431 1112346788888888888888887766655432 211 111 11 223334556666666666
Q ss_pred HHHHHHh----cCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 273 LLDLMIQ----IGVHP-NTFVYNTLMDGFCLTGRVNHAKELFVSM 312 (598)
Q Consensus 273 ~~~~~~~----~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 312 (598)
.-++..+ .|-.+ .......+...|-..|+.+.|+.-|+..
T Consensus 228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 5555433 33111 1223444556677777777776666654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.1 Score=36.77 Aligned_cols=121 Identities=14% Similarity=0.084 Sum_probs=86.8
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHh--------ccH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN--------CRI 121 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~--------~~~ 121 (598)
.+.+..++|+..|..+.+.+-....+.+-..+.....+.|+...|+..|.++-.....|...--..-++ ..+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 567889999999999877554434555666777888899999999999999877654554431111111 166
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 122 MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
++.....+-+...+.+.....-..|.-+-.+.|++..|.+.|..+....
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 6666666666554444445566788888899999999999999988744
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.46 Score=43.41 Aligned_cols=153 Identities=16% Similarity=0.087 Sum_probs=108.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHH----HHHHHHHHHHhcCCH
Q 047932 297 CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV----TYSTLFLGLFEVHQV 372 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 372 (598)
...|+..+|-..++++.+. .|.|...+...-.+|...|+.+.-...++++... ..+|.. .-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888888888765 3678888888888899999999988889888765 223332 223344456678999
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047932 373 EHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS---KYELDIISYSCLIDGLCKIGKLETAWELF 449 (598)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (598)
++|++.-++..+.+ +.|.....+..+.+...|+..++.++..+-... +.-.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998888875 567777778888888889999988877654321 10111223334445566678899999999
Q ss_pred HHH
Q 047932 450 QSL 452 (598)
Q Consensus 450 ~~~ 452 (598)
++-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 854
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.44 E-value=2.4 Score=40.01 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
+.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++...+... ..++.-|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444444444444443332 13444444555555555555544443211 11223444445555555555
Q ss_pred HHHHHHHHH
Q 047932 408 LEALELFCA 416 (598)
Q Consensus 408 ~~A~~~~~~ 416 (598)
.+|..+..+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555544444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.67 Score=35.98 Aligned_cols=92 Identities=20% Similarity=0.116 Sum_probs=68.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhCC
Q 047932 189 DGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVV---TFSVIVDELCKNG 265 (598)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g 265 (598)
-++...|+.+.|++.|.+.... .+-....||.-..++--.|+.++|++-+++..+..-..+.. .|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567788999999999888775 33477889999999888999999998888887652222222 3444455677788
Q ss_pred CHHHHHHHHHHHHhcC
Q 047932 266 KMEEASRLLDLMIQIG 281 (598)
Q Consensus 266 ~~~~a~~~~~~~~~~~ 281 (598)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888887766
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.3 Score=41.44 Aligned_cols=116 Identities=16% Similarity=0.032 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHccC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC
Q 047932 337 VEEALNLYRKMLPK-GIRPT-VVTYSTLFLGLFE---------VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG 405 (598)
Q Consensus 337 ~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 405 (598)
.+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +.|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 46777788887721 22333 3444444433321 223445555556666654 456666666666666666
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 406 FVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 406 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
+++.|..+|++....+ +....+|......+...|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6777777777666553 22344555555556666777777777776655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.5 Score=46.72 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
.+.++..+.+.|..+.|+++-.. +. .-.....+.|+++.|.++.++. .+...|..|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~L 353 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQL 353 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHH
Confidence 45566666666666666555222 11 1223444566666665544322 245566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRV 302 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 302 (598)
.......|+++-|++.|.+... +..|+-.|...|+.+...++.+.....| -++....++.-.|+.
T Consensus 354 g~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~ 418 (443)
T PF04053_consen 354 GDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDV 418 (443)
T ss_dssp HHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-H
T ss_pred HHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCH
Confidence 6666666666666666655321 3445555566666655555555554443 123333334444555
Q ss_pred HHHHHHHHH
Q 047932 303 NHAKELFVS 311 (598)
Q Consensus 303 ~~a~~~~~~ 311 (598)
++..+++.+
T Consensus 419 ~~cv~lL~~ 427 (443)
T PF04053_consen 419 EECVDLLIE 427 (443)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.087 Score=32.55 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTI 502 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 502 (598)
+..+...|.+.|++++|+++|+++++.. |-|...+..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 4445555555555555555555555543 3344444333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.87 E-value=5.9 Score=41.40 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=88.5
Q ss_pred HHHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 047932 36 KFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 115 (598)
Q Consensus 36 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 115 (598)
..+......||..+.+.|++++|...|-+.+..-.. ..++.-|.......+.-.+++.+.+.|+.-...+ ..
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-------s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht-tl 436 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-------SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT-TL 436 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-------HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhH-HH
Confidence 356777778999999999999999999887643211 1345556666677777888888888886544333 23
Q ss_pred HHhc-----cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHH
Q 047932 116 LINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDG 190 (598)
Q Consensus 116 ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 190 (598)
++.+ +.+.-.+..+... .|. -..-....+..+.+.+-.++|.-+-.+... +.+....++
T Consensus 437 LLncYiKlkd~~kL~efI~~~~-~g~--~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----------he~vl~ill-- 500 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISKCD-KGE--WFFDVETALEILRKSNYLDEAELLATKFKK-----------HEWVLDILL-- 500 (933)
T ss_pred HHHHHHHhcchHHHHHHHhcCC-Ccc--eeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----------CHHHHHHHH--
Confidence 3333 3333222222221 110 011244566667677777777655444322 244444333
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 047932 191 VCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~ 208 (598)
-..+++++|++.+..+.
T Consensus 501 -e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 501 -EDLHNYEEALRYISSLP 517 (933)
T ss_pred -HHhcCHHHHHHHHhcCC
Confidence 34688999999887764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.095 Score=32.38 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTII 188 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li 188 (598)
.++..+...|.+.|++++|.++|+++++.. |.|...|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhh
Confidence 357788999999999999999999999986 56677776654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.3 Score=36.56 Aligned_cols=85 Identities=16% Similarity=0.006 Sum_probs=60.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc----cHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----RIMEA 124 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~a 124 (598)
+-..|-.+-|+--|.+.+...|. -+..||.+.-.+...|+++.|.+.|+...+....-+-...+.-|+. ++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence 33566677788888888888886 7889999999999999999999999999876432222222333332 66777
Q ss_pred HHHHHHHHHcC
Q 047932 125 AALFTKLRVFG 135 (598)
Q Consensus 125 ~~~~~~~~~~~ 135 (598)
.+-+...-+.+
T Consensus 153 q~d~~~fYQ~D 163 (297)
T COG4785 153 QDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHhcC
Confidence 66666655543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.85 E-value=5.5 Score=40.99 Aligned_cols=368 Identities=14% Similarity=0.115 Sum_probs=195.1
Q ss_pred ccCCcccccCCChHHHHHHHHHHHHcCCC-------CCCHHH-----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 047932 43 KSSGQGDINLITPNEALCIFDYMLRMHPS-------PPPVSS-----FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL 110 (598)
Q Consensus 43 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 110 (598)
.++|-..++..++++-..+.+...-.+-. |-...- -..+++-+...+.|..|+++-.-+...-... .
T Consensus 393 AsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~ 471 (829)
T KOG2280|consen 393 ASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-D 471 (829)
T ss_pred HhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-c
Confidence 34677777888888777666554321111 112222 2356777788888999988887765321111 2
Q ss_pred HhHHHHHhc-------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhH
Q 047932 111 YTHSILINC-------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVT 183 (598)
Q Consensus 111 ~~~~~ll~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 183 (598)
..+...... .-+++++..++=.+.-. .+..+|..+.......|+++.|..+++.=...+.. +..-.+...
T Consensus 472 ~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~q--V~lLL~m~~ 548 (829)
T KOG2280|consen 472 RVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQ--VPLLLKMKD 548 (829)
T ss_pred HHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccch--hHHHhccch
Confidence 222222221 22333333332222111 34556788888888899999998887643222100 000112223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 047932 184 YNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK 263 (598)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (598)
+..-+.-+.+.|+.+-...++-.+... .+...+... ..+...|..+|....+.. +..+ +-..|..
T Consensus 549 ~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q 613 (829)
T KOG2280|consen 549 SSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQ 613 (829)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhchhhhHHHHHHHHhh---chhh---hhhhhhc
Confidence 444555666677777777666666543 122222222 223445666666665531 1111 1122222
Q ss_pred CCCHHHHHHH-HHHHH----hcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHC-CCCCChhhHHHH
Q 047932 264 NGKMEEASRL-LDLMI----QIGVHPNTFVYNTLMDGFCLTGR----------VNHAKELFVSMESN-GCMHDVVSYTTL 327 (598)
Q Consensus 264 ~g~~~~a~~~-~~~~~----~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~-~~~~~~~~~~~l 327 (598)
..+...+-.+ ++... ..|..|+. ......+.+... ..+-..+.+.+... +......+.+--
T Consensus 614 ~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dT 690 (829)
T KOG2280|consen 614 DDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDT 690 (829)
T ss_pred ccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHH
Confidence 2222221111 11100 11222222 223333333322 11122222222221 222333445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
+..+...|+..+|.++-.+.+- ||...|-.-+.+++..+++++..++-+... .+.-|.-++.+|.+.|+.
T Consensus 691 v~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 6667788888999888877753 577778788888888888887766654443 234566678889999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQS 451 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (598)
++|..++.+.... . ....+|.+.|++.+|.++--+
T Consensus 761 ~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 9999988776532 2 356778888888888776543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.8 Score=37.42 Aligned_cols=199 Identities=22% Similarity=0.095 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHH-
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESN-GCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFL- 364 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 364 (598)
.........+...+++..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444455555555555555544431 112233444444444555555555555555555432221 111111111
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 047932 365 GLFEVHQVEHALKLFDEMQHNDV--AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL-DIISYSCLIDGLCKIGK 441 (598)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 441 (598)
.+...++++.+...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 44555555555555555533110 0112222222223444555555555555555432 11 23444455555555555
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 442 LETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
++.+...+...... .|+ ...+..+...+...|..+.+...+.+...
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555542 222 22233333333344445555555555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.8 Score=37.41 Aligned_cols=224 Identities=17% Similarity=0.056 Sum_probs=152.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047932 299 TGRVNHAKELFVSMESNGCM-HDVVSYTTLINGYCKTKNVEEALNLYRKMLPK-GIRPTVVTYSTLFLGLFEVHQVEHAL 376 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (598)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555566555554311 13466777778888899999999888887652 22335566667777777888899999
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHH-HHHHcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 377 KLFDEMQHNDVAADTYIYNTFID-GLCKNGFVLEALELFCAIGNSKY--ELDIISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999888754332 222222333 68889999999999998865321 1233444455555777889999999999988
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 454 RVGLLP-NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 454 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
... .. ....+..+...+...++++.|...+....... +.....+..+...+...|..+++.. .+......
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALE--ALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHH--HHHHHHHh
Confidence 752 22 35677778888888889999999999988753 2224555555555557777888888 88887755
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.69 E-value=3.6 Score=38.15 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 288 VYNTLMDGFCLTGRVN---HAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
++..++.+|...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455556666655533 3444554554332 223444444455555566666777777666654
|
It is also involved in sporulation []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.67 E-value=3.7 Score=38.13 Aligned_cols=167 Identities=12% Similarity=0.097 Sum_probs=98.6
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHH-------HHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHhccH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSS-------FNILFGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCRI 121 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 121 (598)
.++|+.+.|..++.++-...+. .++.. +...+......+ +++.|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~-~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~------------------ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNS-LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD------------------ 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhc-CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH------------------
Confidence 3689999999999998665421 23322 223333344556 88888888877653
Q ss_pred HHHHHHHHH---HHHcCCCCC-----HhhHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHH
Q 047932 122 MEAAALFTK---LRVFGCEPD-----VFTYNTLINGLCRTGHTI---VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDG 190 (598)
Q Consensus 122 ~~a~~~~~~---~~~~~~~~~-----~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 190 (598)
+++. +.+. .++ ..++..++.+|...+..+ +|..+++.+.... +..+..+..-+..
T Consensus 65 -----~l~~~~~~~~~--~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~i 130 (278)
T PF08631_consen 65 -----ILEKPGKMDKL--SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEI 130 (278)
T ss_pred -----HHHhhhhcccc--CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHH
Confidence 2222 1111 222 346777888888877654 4555666665543 3335666667777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 047932 191 VCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF---SHADDWNEAKRLFIKMMDQGVHPNV 251 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 251 (598)
+.+.++.+.+.+.+.+|... +.-....+..++..+ ... ....+...+..++...+.|..
T Consensus 131 l~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 131 LLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 77788999999999999875 221334444444443 332 334555555555544344443
|
It is also involved in sporulation []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.7 Score=34.05 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=22.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVG 456 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (598)
+..+...|.-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444444444444444443321 3344444444444444444444444444444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.65 E-value=2.6 Score=39.26 Aligned_cols=229 Identities=13% Similarity=0.058 Sum_probs=107.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCc---CHHHHHHHHHHHHh
Q 047932 226 FSHADDWNEAKRLFIKMMDQG--VHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI--GVHP---NTFVYNTLMDGFCL 298 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~---~~~~~~~ll~~~~~ 298 (598)
+....+.++|+..+.+.+..- ...--.++..+..+.+..|.+++++..--.-++- .... --..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777665531 0111234555666677777776655432211110 0010 11233444444444
Q ss_pred cCCHHHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHhc
Q 047932 299 TGRVNHAKELFVSMESN-GCMH---DVVSYTTLINGYCKTKNVEEALNLYRKMLPK-----GIRPTVVTYSTLFLGLFEV 369 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 369 (598)
.-++.+++.+-..-... |..+ .......+..++...+.++++++.|+....- +.......+..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44555555444443332 1111 1122333455556666667777776665432 1111224555666666666
Q ss_pred CCHHHHHHHHHHHhhC----CCCcCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHhh----CCCCC-CHHHHHHHHHH
Q 047932 370 HQVEHALKLFDEMQHN----DVAADTYIY-----NTFIDGLCKNGFVLEALELFCAIGN----SKYEL-DIISYSCLIDG 435 (598)
Q Consensus 370 ~~~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~ 435 (598)
.++++|.-+..++.+. ++..-..-| ..+.-++...|....|.+..++..+ .|-.+ .......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6676666665554332 111111111 1233344455666566555555432 22111 12233455566
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 047932 436 LCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~ 454 (598)
|...|+.+.|+.-|+....
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6666666666666665544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.57 E-value=2.9 Score=36.44 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047932 440 GKLETAWELFQSLSRV--GLLPN---VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 440 g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 495 (598)
.+++.|+..|+..-+. |-..+ ...+.-+...-...+++.+|+++|++.....+..+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4556666666655431 11111 11222233333456777777777777765543333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.35 E-value=2 Score=33.65 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
.+...+..+...|.-++..+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445566667777777777777776543 56777777777888888888888888877777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.17 E-value=2.6 Score=34.27 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=17.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK 403 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (598)
+..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333444444444444444443 2344444444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.54 Score=39.52 Aligned_cols=92 Identities=9% Similarity=0.066 Sum_probs=51.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH-
Q 047932 468 IHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIF-----NTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI- 541 (598)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~- 541 (598)
...+..+|++++|...++..+.. |....+ ..|.+.....|.+++|.. .++..... +..+.......
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~--~L~t~~~~---~w~~~~~elrGD 167 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALK--TLDTIKEE---SWAAIVAELRGD 167 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHH--HHhccccc---cHHHHHHHHhhh
Confidence 34556677777777777666542 222222 223445666777777777 66665533 22222222222
Q ss_pred HHHHhCCCCCChhhHHHhhhcCcccc
Q 047932 542 SIMLQKDMSPGDTMFSTALLMDPDCS 567 (598)
Q Consensus 542 ~~~~~~~~~~a~~~~~~~l~~~P~~~ 567 (598)
++...|+-++|+..|+++++.+++.+
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCChH
Confidence 55566777777777777777764443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.9 Score=33.91 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 047932 184 YNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK 263 (598)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (598)
...++..+...+.+......++.+...+. .+...++.++..|++.+ ..+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34567777777888888888888887763 57778888888888654 3444444442 1233344557777777
Q ss_pred CCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047932 264 NGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT-GRVNHAKELFVSMESNGCMHDVVSYTTLINGYC 332 (598)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 332 (598)
.+.++++.-++..+-. .. ..+..+... ++.+.|.+.+.+. .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~----~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FK----DAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HH----HHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777766522 11 122333333 6777777766642 15556666666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.74 E-value=13 Score=40.78 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=20.5
Q ss_pred CCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHhh
Q 047932 178 KPDTVTYNTIIDGVCKEG--FVDKAMELFLQMKD 209 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 209 (598)
.|+ .-...+|..|.+.+ .++.+++...+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 454 44456778888877 67777776666654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.55 E-value=3.2 Score=38.68 Aligned_cols=133 Identities=11% Similarity=0.183 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--c----CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC
Q 047932 122 MEAAALFTKLRVFGCEPDVFTYNTLINGLCR--T----GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG 195 (598)
Q Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 195 (598)
++.+.+++.+.+.|+..+..+|.+....+.. . -...+|..+|+.|.+..+-. ..++...+..++.. ..+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL---Ts~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL---TSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---cCccchhHHHHHhc--ccc
Confidence 3455566677777776666655553333332 1 23457888999998876311 24455566666544 333
Q ss_pred C----HHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047932 196 F----VDKAMELFLQMKDENINPNVV--TYNSLIHCFSHADD--WNEAKRLFIKMMDQGVHPNVVTFSVIVD 259 (598)
Q Consensus 196 ~----~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (598)
+ .+.+..+|+.+...|...+-. ....++........ ..++.++++.+.+.|+++....|..+.-
T Consensus 154 ~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3 345667777777766654332 22223322222211 4577778888888887777766665443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.93 Score=41.21 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCC
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD-----ENINPN 215 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 215 (598)
.++..++..+...|+++.+.+.++++...+ +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 355666777777777777777777777765 55677777777777777777777777776654 255555
Q ss_pred HHHHHH
Q 047932 216 VVTYNS 221 (598)
Q Consensus 216 ~~~~~~ 221 (598)
..+...
T Consensus 227 ~~~~~~ 232 (280)
T COG3629 227 PELRAL 232 (280)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.22 E-value=15 Score=40.19 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCC--CHHHHHHHHHHHHh
Q 047932 235 AKRLFIKMMDQGVHPNVVTFSVIVDELCKNG--KMEEASRLLDLMIQ 279 (598)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 279 (598)
.-+.+...+.+ ..|+ .....++.+|.+.+ .++.+++.......
T Consensus 776 vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 776 VCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33333333333 2444 44455677787777 66777776666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.2 Score=29.29 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLN 102 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (598)
+|..+..+|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999965
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.4 Score=40.14 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 047932 427 ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA-----KGVEPDCVIFNT 501 (598)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 501 (598)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456677777888888888888888887763 33677788888888888888888888887764 378888777766
Q ss_pred HHHH
Q 047932 502 IMLG 505 (598)
Q Consensus 502 l~~~ 505 (598)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.99 E-value=4.4 Score=33.27 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 437 CKIGKLETAWELFQSLSRVGLLPNVVTYNI-MIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
...++.+++..++..+.- +.|....... -...+...|+|.+|+++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345667777777776665 3444332221 123355677777777777776554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.1 Score=39.97 Aligned_cols=35 Identities=31% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047932 478 DKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNET 512 (598)
Q Consensus 478 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 512 (598)
+-++.++++|...|+-||..+-..++.++.+.|-.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 46899999999999999999999999999777654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.29 Score=28.57 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777777777777777744
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.52 E-value=12 Score=36.91 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH-------hccHHHHHHH
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI-------NCRIMEAAAL 127 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll-------~~~~~~a~~~ 127 (598)
+.+-..+|+.+....+. |+..|...+..+.+.+.+.+.-.+|.+|+.. .|+....-... +.+++.|+.+
T Consensus 87 ~~rIv~lyr~at~rf~~--D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--Hp~~~dLWI~aA~wefe~n~ni~saRal 162 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNG--DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK--HPNNPDLWIYAAKWEFEINLNIESARAL 162 (568)
T ss_pred HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCchhHHhhhhhHHhhccchHHHHHH
Confidence 45666778888776665 9999999999998888899999999999876 34433322222 2278999999
Q ss_pred HHHHHHcC
Q 047932 128 FTKLRVFG 135 (598)
Q Consensus 128 ~~~~~~~~ 135 (598)
|...++.+
T Consensus 163 flrgLR~n 170 (568)
T KOG2396|consen 163 FLRGLRFN 170 (568)
T ss_pred HHHHhhcC
Confidence 99988874
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.7 Score=35.77 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN--VVTFSVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666666655432222 22344555555666666666555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.30 E-value=16 Score=37.94 Aligned_cols=273 Identities=14% Similarity=0.086 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhC
Q 047932 197 VDKAMELFLQMKDENINPNVVTYNSLIHC-----FSHADDWNEAKRLFIKMMD-------QGVHPNVVTFSVIVDELCKN 264 (598)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 264 (598)
...|.+.++...+.| +......+..+ +....|.+.|...|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888775 33333333333 3456789999999998877 44 333556677777764
Q ss_pred C-----CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hc
Q 047932 265 G-----KMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL-TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYC----KT 334 (598)
Q Consensus 265 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 334 (598)
. +.+.|..++...-..|. |+.......+..... ..+...|.++|......| ....+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence 3 56779999998888773 344333222222222 235779999999998887 3333333333333 23
Q ss_pred CCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH-HHHH---HH----cCC
Q 047932 335 KNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTF-IDGL---CK----NGF 406 (598)
Q Consensus 335 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~----~g~ 406 (598)
.+...|..++.+..+.|. |....-...+..+.. +.++.+...+..+...+... ..+-... +... .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccc
Confidence 467899999999888872 232222222333333 67777766666666554321 1111111 1111 00 124
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHH
Q 047932 407 VLEALELFCAIGNSKYELDIISYSCLIDGLCKI----GKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC----NDGQMD 478 (598)
Q Consensus 407 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~ 478 (598)
...+...+......| +......+...|..- .+++.|...+......+ ......+...+- ... +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 555666666665544 445555555554433 35777777777776653 333333333332 123 56
Q ss_pred HHHHHHHHHHHC
Q 047932 479 KAHDLFLDMEAK 490 (598)
Q Consensus 479 ~A~~~~~~~~~~ 490 (598)
.|.+++++..+.
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 777777776654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.18 Score=45.94 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=14.1
Q ss_pred hCCCCCChhhHHHhhhcCccccc
Q 047932 546 QKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 546 ~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
.|+..+|.+.++.+|++.|++..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHH
Confidence 35555666666666666666543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.11 E-value=17 Score=37.91 Aligned_cols=55 Identities=15% Similarity=-0.020 Sum_probs=36.8
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNS 103 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (598)
+++.+.|++|+.+-+.....-+....-..+..++..+...|++.+|-.+.-+|..
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 3455667888877665433322212345677888888888899888888877774
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.91 E-value=19 Score=38.00 Aligned_cols=183 Identities=15% Similarity=0.110 Sum_probs=97.7
Q ss_pred HHHHHHHHHH-HcCCCC--CHhhHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCccccCCCH-----hHHHHHHHHHHh
Q 047932 123 EAAALFTKLR-VFGCEP--DVFTYNTLINGLC-RTGHTIVALNLFEEMANGNGEFGVVCKPDT-----VTYNTIIDGVCK 193 (598)
Q Consensus 123 ~a~~~~~~~~-~~~~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~ 193 (598)
.|+..++-+. ...+.| +..++..++..|. ...+++.|...+++...... +++. .....++..+.+
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~------~~~~~d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE------RHRLTDLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHHHh
Confidence 3445555444 222233 3345566677666 56788888888887755431 1211 122345566666
Q ss_pred cCCHHHHHHHHHHHhhC--C--CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHH--h
Q 047932 194 EGFVDKAMELFLQMKDE--N--INPNVVTYNSL-IHCFSHADDWNEAKRLFIKMMDQG---VHPNVVTFSVIVDELC--K 263 (598)
Q Consensus 194 ~g~~~~A~~~~~~~~~~--~--~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~ 263 (598)
.+... |...+++..+. + ..+-...|..+ +..+...++...|.+.++.+...- ..|...++..++.+.. .
T Consensus 113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR 191 (608)
T ss_pred cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 66555 88888776653 1 11112223333 222333478888888888776542 2233334444444333 4
Q ss_pred CCCHHHHHHHHHHHHhcC---------CCcCHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 047932 264 NGKMEEASRLLDLMIQIG---------VHPNTFVYNTLMDG--FCLTGRVNHAKELFVSM 312 (598)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~ 312 (598)
.+..+++.+.++.+.... ..|...++..++.. +...|+++.+...++++
T Consensus 192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666663321 12345556666544 45567766766665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.88 E-value=6.6 Score=32.72 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=49.8
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 237 RLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
+.++.+.+.+++|+...+..+++.+.+.|++... ..+++.++-+|.......+-.+. +.+..+.++--+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444455556666666666666666666665443 33334444444443333332221 2223333333333332
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 317 CMHDVVSYTTLINGYCKTKNVEEALNLYRKM 347 (598)
Q Consensus 317 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 347 (598)
=...+..++..+...|++-+|+++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0112445556666667777777666654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.79 E-value=35 Score=40.80 Aligned_cols=324 Identities=12% Similarity=0.035 Sum_probs=167.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 145 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIH 224 (598)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 224 (598)
.+..+-.+.+.+.+|...++.-...... -......|..+...|...+++|...-+...-.. +...+ .-+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~----~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKE----KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccch----hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHH
Confidence 4455566788899999888884111100 011233444555589999999988877764221 22223 2344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHH-HHHHHHHhcCCHH
Q 047932 225 CFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYN-TLMDGFCLTGRVN 303 (598)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~ 303 (598)
.....|+|..|...|+.+.+.+ ++...+++.++......|.++..+-..+-..... .+....++ .-+.+.-+.+++|
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 5677899999999999998763 3346678888888888888887777665554432 22233333 3334556778888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHH--HHHHHh--cCCHHHHHHHHHHHccCCCCC---------CHHHHHHHHHHHHhcC
Q 047932 304 HAKELFVSMESNGCMHDVVSYTTL--INGYCK--TKNVEEALNLYRKMLPKGIRP---------TVVTYSTLFLGLFEVH 370 (598)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~--~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~ 370 (598)
.....+. .. +..+|... +....+ ..+.-.-.+.++.+.+.-+.| -...|..++..+.-..
T Consensus 1536 ~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 7777665 11 33333333 222222 222222222333222211100 1123333333322111
Q ss_pred CHHHHHHHHHHHh-hCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH-hhC----CC-CCCHHHHHHHHHHHHHcCCHH
Q 047932 371 QVEHALKLFDEMQ-HNDVAADTYIYNTFIDGLCKNGFVLEALELFCAI-GNS----KY-ELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 371 ~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----~~-~~~~~~~~~l~~~~~~~g~~~ 443 (598)
--... +.+.... ......+..-|..-+..-....+..+-+-.+++. ... +. .--..+|...++...+.|+++
T Consensus 1609 l~~~~-~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1609 LENSI-EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHH-HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 10000 0000000 0000111111111111111111111111111111 111 11 123567888888888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (598)
.|...+-...+.+ .| ..+.-.+.-....|+...|+.++++.++..
T Consensus 1688 ~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9998887777754 33 334556777888999999999999988653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.22 Score=28.61 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=20.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHH
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAM 201 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~ 201 (598)
|.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 567888888888888888888875
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.43 Score=27.25 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 75 VSSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
+.+|..++..+...|++++|+..|+++++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357888899999999999999999998865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.44 Score=27.10 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 76 SSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
.+|..+...+.+.|++++|++.|++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56778888899999999999999988764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.40 E-value=22 Score=37.80 Aligned_cols=226 Identities=16% Similarity=0.097 Sum_probs=121.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHH-HHHhcCCHHHHHHHHHHHccC----CCCCCHHHHHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDV-------VSYTTLIN-GYCKTKNVEEALNLYRKMLPK----GIRPTVVTYSTLF 363 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~ 363 (598)
.....++++|..++.++...-..|+. ..++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44568899999998887654222221 12333322 334578899999888876553 2233556677778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHH---H--HHHHHHcCCH--HHHHHHHHHHhhC---CCC---CCHHHHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNT---F--IDGLCKNGFV--LEALELFCAIGNS---KYE---LDIISYS 430 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~g~~--~~A~~~~~~~~~~---~~~---~~~~~~~ 430 (598)
.+..-.|++++|..+.....+..-..+...+.. + ...+..+|+. .+.+..|...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999999877665422223333322 2 2335566733 3333333333211 001 1223444
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHH
Q 047932 431 CLIDGLCKI-GKLETAWELFQSLSRVGLLPNVVT--YNIMIHGLCNDGQMDKAHDLFLDMEAKGV----EPDCVIFNTIM 503 (598)
Q Consensus 431 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~ 503 (598)
.+..++.+. +...++..-+.-.......|-... +..|+......|+.++|...+.++..... .++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 455554441 222222222222222222222222 22566777889999999999998876422 22222222333
Q ss_pred HH--HHhcCCccccchhHHHHH
Q 047932 504 LG--FIRNNETSKSSRGKLMSQ 523 (598)
Q Consensus 504 ~~--~~~~g~~~~A~~~~~~~~ 523 (598)
.. ....|+.+++.. ...+
T Consensus 665 ~~~lwl~qg~~~~a~~--~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAE--WLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHH--HHHh
Confidence 32 235777777666 5555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.97 E-value=8.3 Score=32.14 Aligned_cols=135 Identities=15% Similarity=0.183 Sum_probs=82.8
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 201 MELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
.+.++.+...+++|+...+..++..+.+.|.+.....++ ..++-+|.......+-.+ .+.+..+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 355566667788899999999999999999876655544 444555554443333222 22344455544444442
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHcc
Q 047932 281 GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 349 (598)
=...+..++..+...|++-+|.++.+..... +......++.+..+.++...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1114556677888899999999888775432 223345566666677776655555555444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.96 E-value=5 Score=33.58 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHH
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLA---KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKL 131 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~ 131 (598)
++.|++.++.....+|. ++..++.-..++. +..+..++..+++.. +.-|++.
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLELAqfk~g~es~~miedA-----------------------isK~eeA 61 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLELAQFKQGPESKKMIEDA-----------------------ISKFEEA 61 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHHHHhccCcchHHHHHHHH-----------------------HHHHHHH
Confidence 57788888888888887 7776655444444 334445555555544 4455666
Q ss_pred HHcCCCCC-HhhHHHHHHHHHhcCC-----------hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHH
Q 047932 132 RVFGCEPD-VFTYNTLINGLCRTGH-----------TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDK 199 (598)
Q Consensus 132 ~~~~~~~~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 199 (598)
+..+ |+ ..++.++..+|...+. +++|.+.|++.... .|+...|+.-+.... +
T Consensus 62 L~I~--P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--------~P~ne~Y~ksLe~~~------k 125 (186)
T PF06552_consen 62 LKIN--PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--------DPNNELYRKSLEMAA------K 125 (186)
T ss_dssp HHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHH------T
T ss_pred HhcC--CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHH------h
Confidence 6553 33 4566777777765432 56677777777774 588889988887753 4
Q ss_pred HHHHHHHHhhCC
Q 047932 200 AMELFLQMKDEN 211 (598)
Q Consensus 200 A~~~~~~~~~~~ 211 (598)
|-++..++.+.+
T Consensus 126 ap~lh~e~~~~~ 137 (186)
T PF06552_consen 126 APELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHSS
T ss_pred hHHHHHHHHHHH
Confidence 556666665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.96 E-value=2.1 Score=36.35 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN--VVTYNIMIHGLCNDGQMDKAHDLFLDMEAK---GVEPDCVIFNTI 502 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l 502 (598)
.+..++..|.+.|+.+.|.+.|.++.+....+. ...+..+++.....|++..+...+.++... +-.++...-...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456667777777777777777777766433333 234556666777777777777776666543 111111111111
Q ss_pred HH--HHHhcCCccccchhHHHHHHH
Q 047932 503 ML--GFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 503 ~~--~~~~~g~~~~A~~~~~~~~~~ 525 (598)
.. .+...|++.+|-+ .|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~--~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAE--LFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHH--HHHccC
Confidence 11 2345677777776 665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=8.6 Score=31.92 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=47.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-HH--HHHHHHHHHcCCH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTY-IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDII-SY--SCLIDGLCKIGKL 442 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~~g~~ 442 (598)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++......|-.. -. ..-...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455555555555555544221111 11112222344455555555555554332222111 00 0111123344444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 443 ETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
+......+-+...+-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44444444443322222222223333344445555555555544443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.58 E-value=15 Score=34.35 Aligned_cols=130 Identities=13% Similarity=0.233 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhCCC-
Q 047932 197 VDKAMELFLQMKDENINPNVVTYNSLIHCFSH--AD----DWNEAKRLFIKMMDQGV---HPNVVTFSVIVDELCKNGK- 266 (598)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 266 (598)
+++...+++.|.+.|..-+..+|-+....... .. ...++..+|+.|++.-. .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 33455666777777766665554432222211 11 24556666776665421 1223333333322 2222
Q ss_pred ---HHHHHHHHHHHHhcCCCcCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047932 267 ---MEEASRLLDLMIQIGVHPNTF--VYNTLMDGFCLTGR--VNHAKELFVSMESNGCMHDVVSYTTLI 328 (598)
Q Consensus 267 ---~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (598)
.+.+..+|+.+.+.|+..+.. ....++.......+ ..++.++++.+.+.|++.....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 234455555555555433221 12222221111111 234555555555555555554444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.47 E-value=3.4 Score=37.08 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHhHHHHHhc---------
Q 047932 55 PNEALCIFDYMLRM-HPSPPPVSSFNILFGCLAKN-----KHYDTVLSLFKRLNSTGLFPDLYTHSILINC--------- 119 (598)
Q Consensus 55 ~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~--------- 119 (598)
+.+++-.|+..-.. .|...+-.+|...+..+... +..+=-...++.|...|+..|..+|+.+|+.
T Consensus 46 pTK~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~ 125 (406)
T KOG3941|consen 46 PTKSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ 125 (406)
T ss_pred ccccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH
Confidence 34454444443322 22335778888888887643 4455566677889999999999999999986
Q ss_pred ------------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh-HHHHHHHHHHh
Q 047932 120 ------------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI-VALNLFEEMAN 168 (598)
Q Consensus 120 ------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~ 168 (598)
+-+=++.++++|.-.|+-||-.+-..|++++.+.|-.- +...+.-.|.+
T Consensus 126 nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 126 NVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 45568899999999999999999999999999888653 34444445544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.35 E-value=25 Score=36.53 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHCC
Q 047932 230 DDWNEAKRLFIKMMDQG 246 (598)
Q Consensus 230 ~~~~~a~~~~~~~~~~~ 246 (598)
.+...|..++.+..+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 34555555555555544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.22 E-value=18 Score=34.87 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 047932 355 TVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA---DTYIYNTFIDGLCKNGFVLEALELFCAIGN 419 (598)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 419 (598)
...++..++..+.+.|.++.|...+..+...+... .+.+...-+..+-..|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666667777777777777777766533111 233444445555666777777776666654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.36 E-value=31 Score=36.29 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047932 181 TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHA 229 (598)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (598)
...| .+|-.|.|.|++++|.++....... .......+...+..|...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3344 4778899999999999999665543 333455666667776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.28 E-value=1.1 Score=25.45 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
|..++.+|...|++++|+..|++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3334444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.16 E-value=32 Score=36.18 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=27.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhc
Q 047932 145 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKE 194 (598)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 194 (598)
.+|--|.|+|++++|.++.......- ......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~-------~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQF-------QKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS--------TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhh-------cchhHHHHHHHHHHHhC
Confidence 35666789999999999995554432 34455666666666654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.92 E-value=25 Score=34.69 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC--NDGQMDKAHDLFLDMEAK-GVEPDCVIFNTIMLGF 506 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~ 506 (598)
+.++..+...|-..+|...+..+... .+|+...|..++..-. ..-+...+.++|+.|... | .|+..|...+.--
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 45666667777777777777777665 4556666666665322 122266777777777654 4 5677777666666
Q ss_pred HhcCCccccchhHHHHHHHhc
Q 047932 507 IRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~ 527 (598)
...|..+.+-. ++.++.+.
T Consensus 541 ~~~g~~en~~~--~~~ra~kt 559 (568)
T KOG2396|consen 541 LPLGRPENCGQ--IYWRAMKT 559 (568)
T ss_pred ccCCCcccccH--HHHHHHHh
Confidence 67777777777 77666655
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.75 E-value=15 Score=31.83 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 462 VTYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (598)
.||.-|...+...|+.++|..+|+-.+..+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 456777777888888888888888777653
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.28 E-value=7.5 Score=33.09 Aligned_cols=90 Identities=20% Similarity=0.097 Sum_probs=61.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 047932 399 DGLCKNGFVLEALELFCAIGNSKYELD----IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCN 473 (598)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 473 (598)
.-+.+.|++++|..-|..++....... ...|..-..++.+.+.++.|+.-..+.++. .|+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 346778888888888888876642221 224555556777888888888887777774 333 3334444556777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047932 474 DGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~ 490 (598)
...+++|++-|+++++.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 78888888888888875
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.61 Score=45.99 Aligned_cols=101 Identities=15% Similarity=0.021 Sum_probs=76.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH---HHHHhCC
Q 047932 472 CNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI---SIMLQKD 548 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~ 548 (598)
...|+...|...+..+....-....+....|.....+.|...+|.. ++.+.+..+ ...+.++.. ......|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~--~l~q~l~~~----~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATK--LLLQALAIN----SSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHH--HHHHHHhhc----ccCchHHHhcchhHHHHhh
Confidence 3579999999999888754312233455667778888899999999 999988762 334444433 5666889
Q ss_pred CCCChhhHHHhhhcCccccchhhHhhhhCC
Q 047932 549 MSPGDTMFSTALLMDPDCSCDLESLIHNTD 578 (598)
Q Consensus 549 ~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~ 578 (598)
++.|++.++.++.++|+++..-+.|..--+
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999998888754433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.17 E-value=13 Score=31.68 Aligned_cols=95 Identities=17% Similarity=0.063 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAAD-----TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC 437 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (598)
..-+...|++++|..-|..++... ++. ...|..-..++.+.+.++.|+.-..+.++.+ +.....+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 344778999999999999998863 332 3445556677889999999999888888765 223344455567888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCH
Q 047932 438 KIGKLETAWELFQSLSRVGLLPNV 461 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~ 461 (598)
+..++++|+.-|.++.+. .|..
T Consensus 180 k~ek~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHh--Ccch
Confidence 889999999999999885 4543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.09 E-value=8.3 Score=35.35 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 441 KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
++++++.++..=++.|+-||..+++.+++.+.+.+++.+|.++.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555544444443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.77 E-value=42 Score=35.85 Aligned_cols=227 Identities=16% Similarity=0.059 Sum_probs=121.0
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCcCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHH
Q 047932 260 ELCKNGKMEEASRLLDLMIQIGVHPNTF-------VYNTLM-DGFCLTGRVNHAKELFVSMESN----GCMHDVVSYTTL 327 (598)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l 327 (598)
......++++|..++.++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4456788999999988876542222211 233322 2334578899999888877654 123345666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHH---HHHH--HHHHhcCCHH--HHHHHHHHHhhC---CCC---cCHHHH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTY---STLF--LGLFEVHQVE--HALKLFDEMQHN---DVA---ADTYIY 394 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~--~~~~~~~~~~--~a~~~~~~~~~~---~~~---~~~~~~ 394 (598)
..+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +....|...... ..+ +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 78888899999999988876554222233322 2222 2344566332 223333332221 111 112333
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHH
Q 047932 395 NTFIDGLCKN-GFVLEALELFCAIGNSKYELDII--SYSCLIDGLCKIGKLETAWELFQSLSRVGLL----PNVVTYNIM 467 (598)
Q Consensus 395 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l 467 (598)
..+..++.+. +...++..-+.-.......|-.. .+..|+......|++++|...++++...... ++..+....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4444444441 22223333332222222122222 2236788888999999999999988763222 232222223
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 047932 468 IHG--LCNDGQMDKAHDLFLD 486 (598)
Q Consensus 468 ~~~--~~~~g~~~~A~~~~~~ 486 (598)
+.. ....|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 332 3367887777766655
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.77 E-value=1.6 Score=24.69 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 465 NIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
..+..++...|++++|++.|++.++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.72 E-value=14 Score=30.39 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=7.9
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 047932 436 LCKIGKLETAWELFQSLS 453 (598)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~ 453 (598)
++..|++.+|+.+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444444444444443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.72 E-value=30 Score=34.06 Aligned_cols=380 Identities=10% Similarity=0.008 Sum_probs=194.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHH-----HHHHHH
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG-FVDKAMELFLQMKDENINPNVVTY-----NSLIHC 225 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~ 225 (598)
...+++.|...+++........+......-.++..|...|+... .+..+..++++..+..- +...| .-|+..
T Consensus 59 yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq--~~p~wsckllfQLaql 136 (629)
T KOG2300|consen 59 YTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ--SVPYWSCKLLFQLAQL 136 (629)
T ss_pred HhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc--CCchhhHHHHHHHHHH
Confidence 34567777777776544332221112233456777888888776 78889999988876421 22223 235566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH------HHhCCCH---HHHHHHHHHHHhcCCCcCHHH------HH
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDE------LCKNGKM---EEASRLLDLMIQIGVHPNTFV------YN 290 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~---~~a~~~~~~~~~~~~~~~~~~------~~ 290 (598)
+.-..|+..|.+++.---+. -.+--..|..++.. .....+. ..+.....++.+. ..+|... |.
T Consensus 137 ~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFy 214 (629)
T KOG2300|consen 137 HIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFY 214 (629)
T ss_pred HhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHH
Confidence 67788999998885432211 11222233322221 2222343 4444444555543 3444332 21
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHC---CC------------CCChhhHHHHHH-------------HHHhcCCHHHH
Q 047932 291 --TLMDGFCLTGRVNHAKELFVSMESN---GC------------MHDVVSYTTLIN-------------GYCKTKNVEEA 340 (598)
Q Consensus 291 --~ll~~~~~~g~~~~a~~~~~~~~~~---~~------------~~~~~~~~~l~~-------------~~~~~~~~~~A 340 (598)
.-+.-|...|+...+...++++... +- .|.+..+..+.. .-.-.|-+++|
T Consensus 215 l~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~ 294 (629)
T KOG2300|consen 215 LVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKA 294 (629)
T ss_pred HHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHH
Confidence 2234456678888777777766432 11 112221111111 00122334444
Q ss_pred HHHHH-------HHccCCCCCCHHHHH--------HHHHHHHhcCCHHHHHHHHHHHhhCC-CCcC--------HHHHHH
Q 047932 341 LNLYR-------KMLPKGIRPTVVTYS--------TLFLGLFEVHQVEHALKLFDEMQHND-VAAD--------TYIYNT 396 (598)
Q Consensus 341 ~~~~~-------~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--------~~~~~~ 396 (598)
.++-+ +..+... ....++ .++.+-.-.|++.+|+.-...|.+-. -.|. ......
T Consensus 295 ~K~tDe~i~q~eklkq~d~--~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~L 372 (629)
T KOG2300|consen 295 QKYTDEAIKQTEKLKQADL--MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHML 372 (629)
T ss_pred HHHHHHHHHHHhhcccccc--hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHH
Confidence 44443 3333321 222222 22222234789999998888887531 1222 112222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHH-----HHHHHH
Q 047932 397 FIDGLCKNGFVLEALELFCAIGNSKYELDIISY--SCLIDGLCKIGKLETAWELFQSLSRVGL-LPNVV-----TYNIMI 468 (598)
Q Consensus 397 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~-----~~~~l~ 468 (598)
+...++..+.++.|+.-|....+..-..|...+ ..+...|.+.|+.+.-.++++.+-..+- ..... .+....
T Consensus 373 lGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~g 452 (629)
T KOG2300|consen 373 LGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYG 452 (629)
T ss_pred HhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHH
Confidence 334456678999999999887764333343333 4566778888888877777776543210 11111 111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 469 HGLCNDGQMDKAHDLFLDMEAKGVEPD-----CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
-.....+++.+|...+.+-++..-..| .-....+...+...|+..++.. .+.-..+. ..-.||..+-..
T Consensus 453 lfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~n--mvrpamql--AkKi~Di~vqLw 526 (629)
T KOG2300|consen 453 LFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRN--MVRPAMQL--AKKIPDIPVQLW 526 (629)
T ss_pred HHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh--ccchHHHH--HhcCCCchHHHH
Confidence 223478999999999998876421111 1122333445667787777666 54433222 122467655433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.69 Score=25.99 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
++..++.++.+.|++++|.+.|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445666677777777777777777654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.50 E-value=9.9 Score=38.22 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=20.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047932 228 HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLM 277 (598)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 277 (598)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4445555544443321 3334555555555555555555554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.84 E-value=35 Score=33.90 Aligned_cols=180 Identities=13% Similarity=0.158 Sum_probs=100.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVI 257 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (598)
+.|.....+++..+..+....-...+-.+|..-| -+...|..++.+|... ..++-..+++++.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4455666667777777766766777777776643 3566677777777766 446666777766665332 33333344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCc--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHH
Q 047932 258 VDELCKNGKMEEASRLLDLMIQIGVHP--N---TFVYNTLMDGFCLTGRVNHAKELFVSMESN-GCMHDVVSYTTLINGY 331 (598)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 331 (598)
+..|-+ ++.+.+...|.++...=++. + ...|..+... -..+.+....+...+... |...-...+.-+-..|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 66666777776665542110 1 1133333321 134555566665555443 2223344444555566
Q ss_pred HhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHH
Q 047932 332 CKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLG 365 (598)
Q Consensus 332 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (598)
....++++|++++..+.+.+-+ |..+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 6677777777777777665433 44444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.7 Score=26.06 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 75 VSSFNILFGCLAKNKHYDTVLSLFKRLNS 103 (598)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (598)
..+++.+...|...|++++|..+++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998864
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.42 E-value=24 Score=31.65 Aligned_cols=162 Identities=12% Similarity=0.163 Sum_probs=90.8
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAA 126 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~ 126 (598)
-++..++++|+..|+..++..|... ...+...++....+.|++++....|.+++..
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY---------------------- 94 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY---------------------- 94 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH----------------------
Confidence 3466789999999999998776522 3456678899999999999999999888732
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH-------HHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHH
Q 047932 127 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFE-------EMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDK 199 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 199 (598)
....+..+ -+..+.|+++..-....+.+.-.+.|+ .+.... .| + .|-.-|...|...|.+.+
T Consensus 95 -IkSAVTrN--ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeR--LW--F----KTNtKLgkl~fd~~e~~k 163 (440)
T KOG1464|consen 95 -IKSAVTRN--YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNER--LW--F----KTNTKLGKLYFDRGEYTK 163 (440)
T ss_pred -HHHHHhcc--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcce--ee--e----eccchHhhhheeHHHHHH
Confidence 11111111 123344455444444333333333333 222111 00 1 122446667777777777
Q ss_pred HHHHHHHHhhCCCC----C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 200 AMELFLQMKDENIN----P-------NVVTYNSLIHCFSHADDWNEAKRLFIKMM 243 (598)
Q Consensus 200 A~~~~~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (598)
..++++++...-.. . -...|..=|..|...++-.....+|++.+
T Consensus 164 l~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 164 LQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred HHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 77777776543100 0 12344444555555555555555555543
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.30 E-value=46 Score=34.75 Aligned_cols=155 Identities=11% Similarity=0.093 Sum_probs=78.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH-hCCCCCCHHhHHHHHhc----cHHHHHHHHHHHH-HcCCCCCH-hhHHHHHHHHHh
Q 047932 80 ILFGCLAKNKHYDTVLSLFKRLN-STGLFPDLYTHSILINC----RIMEAAALFTKLR-VFGCEPDV-FTYNTLINGLCR 152 (598)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~ll~~----~~~~a~~~~~~~~-~~~~~~~~-~~~~~l~~~~~~ 152 (598)
.+-..|.-.|++++|+..--..- ...+.++...+.+++.. -++.+.+.+..-. ..++.+.. ...+.++..|..
T Consensus 64 ~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~ 143 (929)
T KOG2062|consen 64 LASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLD 143 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhh
Confidence 34456667788888887665543 33456666666666655 2333444433211 11111111 234556666666
Q ss_pred cCChhHHHH---------HHHHH-HhcCCCCccccCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHhhC---CCCCCHHH
Q 047932 153 TGHTIVALN---------LFEEM-ANGNGEFGVVCKPDTVTYNTIIDGVCKEGF-VDKAMELFLQMKDE---NINPNVVT 218 (598)
Q Consensus 153 ~g~~~~A~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~~ 218 (598)
.+++..|+. ++++. .+.+ .+....+.++..+....+ .+--.++++.+.+. ...||
T Consensus 144 d~e~~~aiGia~E~~rld~ie~Ail~~d--------~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD--- 212 (929)
T KOG2062|consen 144 DNEYKQAIGIAFETRRLDIIEEAILKSD--------SVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD--- 212 (929)
T ss_pred hhHHHHHHhHHhhhhhHHHHHHHhcccc--------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---
Confidence 666555433 34442 2222 112233333333333222 22223333333332 23333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
|..+..+|....+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 556778888889999999999998874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.29 E-value=12 Score=37.58 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=51.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
..+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 345566666666554433 445566666666666666666666665443 23344445555555544
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047932 376 LKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFC 415 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 415 (598)
..+-....+.| ..+. ...++...|+++++.+++.
T Consensus 712 ~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 712 AVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHH
Confidence 44444444443 1111 1223444566665555543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.25 E-value=6.5 Score=28.91 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
++.+-++.+...++.|+.....+-+++|.+.+++..|+++|+-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.01 E-value=4.9 Score=38.98 Aligned_cols=126 Identities=12% Similarity=0.118 Sum_probs=82.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF 226 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (598)
|.--...|+.-.|-+-+....++. +.++.............|+++.+.+.+...... +.....+...+++..
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhh
Confidence 333445677766655555554443 223333333334456789999999888776553 333566778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
.+.|+++.|..+-+.|+...+. +...........-..|-++++...|+++...+
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999999998888876554 44444444444556677888888888887654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.74 E-value=6 Score=29.08 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIID 189 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 189 (598)
+.++-++.+...+..|+..+..+.+++|-+.+++..|.++|+.+...- ..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-------~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-------GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cCchhhHHHHHH
Confidence 566667777777888999999999999999999999999999887542 233445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.73 E-value=9.3 Score=32.77 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=48.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhCCCH
Q 047932 191 VCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ---GVHPNVVTFSVIVDELCKNGKM 267 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 267 (598)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+.++. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 566666666666554445555555555554 55667777777766653 2245666777777777777777
Q ss_pred HHHH
Q 047932 268 EEAS 271 (598)
Q Consensus 268 ~~a~ 271 (598)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 6653
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.58 E-value=6.6 Score=33.92 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDEN--INPNVVTYNS 221 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ 221 (598)
+..+..+.+.++..+++...+.-++.+ |.|...-..+++.+|-.|++++|..-++-..... ..+....|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 444556667777777777777666654 4556666667777777777777766665554431 2223445555
Q ss_pred HHHH
Q 047932 222 LIHC 225 (598)
Q Consensus 222 l~~~ 225 (598)
++++
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 5543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.25 E-value=54 Score=34.63 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=90.7
Q ss_pred HhcCCHHHHHHHHHHHccCCC-CC-----CHHHHHHHHH--HHHhcCCHHHHHHHHH--------HHhhCCCCcCHHHHH
Q 047932 332 CKTKNVEEALNLYRKMLPKGI-RP-----TVVTYSTLFL--GLFEVHQVEHALKLFD--------EMQHNDVAADTYIYN 395 (598)
Q Consensus 332 ~~~~~~~~A~~~~~~~~~~~~-~~-----~~~~~~~l~~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 395 (598)
+-.+++..|...+..+..... .| ....+...+. .+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 347888889988888775311 11 1122222222 3345789999999997 444444444444443
Q ss_pred HH--HHHHHHcC--CHHH--HHHHHHHHhhC---CCCCCHHHHHHHH-HHHHHcC--CHHHHHHHHHHHHhC---CCCCC
Q 047932 396 TF--IDGLCKNG--FVLE--ALELFCAIGNS---KYELDIISYSCLI-DGLCKIG--KLETAWELFQSLSRV---GLLPN 460 (598)
Q Consensus 396 ~l--~~~~~~~g--~~~~--A~~~~~~~~~~---~~~~~~~~~~~l~-~~~~~~g--~~~~A~~~~~~~~~~---~~~p~ 460 (598)
.+ +..+...+ ...+ +..+++.+... ....+..++..++ .++.... ...++...+.+..+. ....+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 11122222 2223 66677666532 1112233333333 3332211 122444444433221 01111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHH-----HHHHHHhcCCccccchhHHHHHHH
Q 047932 461 ---VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV-EP--DCVIFNT-----IMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 461 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
..+++.+...+. .|+..+..+.........- .| ....|.. +...+...|+.++|.. ...+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~--~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE--ARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH--HHHHHH
Confidence 122333333333 6777776555554432211 12 3344533 3344778899999888 776654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.14 E-value=2.5 Score=25.25 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 462 VTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777654
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=85.11 E-value=38 Score=32.77 Aligned_cols=168 Identities=10% Similarity=-0.012 Sum_probs=86.7
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 047932 388 AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGL---CKIGKLETAWELFQSLSRVGLLPNVVTY 464 (598)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 464 (598)
+-...++..+...+...|+.+.|.+++++++-.- + .++......+ ...|.. + ......-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~---e-~~~~~~F~~~~~~~~~g~~--------r-L~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF---E-RAFHPSFSPFRSNLTSGNC--------R-LDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---H-HHHHHHhhhhhcccccCcc--------c-cCCccccchHHH
Confidence 4456666677777777888777777777664110 0 0000000000 000000 0 000011133333
Q ss_pred HHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCccccchhHHHHHHHhccc---CCCCCChH
Q 047932 465 NIM---IHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI-RNNETSKSSRGKLMSQMSSCWS---MCFQPKTL 537 (598)
Q Consensus 465 ~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~---~~~~p~~~ 537 (598)
.++ +..+.+.|-+..|.++.+-+...+..-|+......|+.|. +.++++--++ +.+....... ...-|+..
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~--~~~~~~~~~~~~~~~~lPn~a 181 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLID--FSESPLAKCYRNWLSLLPNFA 181 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHH--HHHhHhhhhhhhhhhhCccHH
Confidence 333 4556677888888888888877663336666666666653 6666666666 6665543100 01234443
Q ss_pred HHHH-HHHHhCCC---------------CCChhhHHHhhhcCccccchh
Q 047932 538 ICSI-SIMLQKDM---------------SPGDTMFSTALLMDPDCSCDL 570 (598)
Q Consensus 538 ~~~~-~~~~~~~~---------------~~a~~~~~~~l~~~P~~~~~~ 570 (598)
.-.. .....++. +.|....++++...|.-...+
T Consensus 182 ~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~L 230 (360)
T PF04910_consen 182 FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPL 230 (360)
T ss_pred HHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHH
Confidence 3333 22333444 678888888888887655544
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.11 E-value=3.1 Score=38.35 Aligned_cols=97 Identities=14% Similarity=-0.008 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047932 396 TFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG 475 (598)
Q Consensus 396 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (598)
.-.+-|.++|.+++|++.|...+... +-++.++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 34667889999999999998887653 3377888888889999999988887777666531 001233444444444456
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 047932 476 QMDKAHDLFLDMEAKGVEPDC 496 (598)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~p~~ 496 (598)
+..+|.+-++..+. ++|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 67777777777665 45663
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.01 E-value=7 Score=35.77 Aligned_cols=102 Identities=14% Similarity=0.206 Sum_probs=55.4
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHH
Q 047932 281 GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG---CMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV 357 (598)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 357 (598)
|......+...++.......+++.++..+-++.... ..++. +-...++.+ -.-++++++.++..=+.-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 334444445555554455566666666666665431 01111 111122222 2235556666666666667777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (598)
+++.++..+.+.+++.+|..+...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777666666655554
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.56 E-value=6.3 Score=29.33 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIID 189 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 189 (598)
+..+-++.+...+..|+..+..+.+.+|.+.+++..|.++|+.+...- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-------~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-------GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cChHHHHHHHHH
Confidence 556667777777888999999999999999999999999999988763 233336665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.32 E-value=33 Score=31.36 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047932 56 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKR 100 (598)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (598)
.+|+++|..+....+. . ..-..++..+....+..+|...+..
T Consensus 150 ~KA~ELFayLv~hkgk--~-v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHKGK--E-VTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhcCC--c-ccHhHHHHHHccccchhhHHHHHHH
Confidence 6899999999887654 2 3344566666677777666665543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.95 E-value=15 Score=31.53 Aligned_cols=20 Identities=5% Similarity=0.092 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHhcCCccc
Q 047932 495 DCVIFNTIMLGFIRNNETSK 514 (598)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~ 514 (598)
|+..+.+|+..|.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 34444444444444444433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.30 E-value=3.3 Score=23.38 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 76 SSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
.+|..+...+...|++++|...|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888899999999999999999998764
|
... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.96 E-value=51 Score=32.57 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=31.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047932 193 KEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWN 233 (598)
Q Consensus 193 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (598)
..+.++...+++..+...|.......++.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 46789999999999998877766666777777777777643
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.87 E-value=40 Score=31.27 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH----HHHHHHHHHHhhCCCC
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV----DKAMELFLQMKDENIN 213 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~ 213 (598)
+|..+....+..+...|.. .+...+..+.. .+|...-...+.+++..|+. .++...+..+... .
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D 102 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---------SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--D 102 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---------CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--C
Confidence 4555555555666555542 33333333332 23455555555666666653 3455555554322 2
Q ss_pred CCHHHHHHHHHHHHh
Q 047932 214 PNVVTYNSLIHCFSH 228 (598)
Q Consensus 214 ~~~~~~~~l~~~~~~ 228 (598)
++..+-...+.++..
T Consensus 103 ~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 103 KSACVRASAINATGH 117 (280)
T ss_pred CCHHHHHHHHHHHhc
Confidence 344444444444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=82.57 E-value=48 Score=31.94 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=51.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 319 HDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRP---TVVTYSTLFLGLFEVHQVEHALKLFDEMQHN 385 (598)
Q Consensus 319 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 385 (598)
....+|..++..+.+.|.++.|...+..+...+... .+.....-++.+-..|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356678889999999999999999999988754221 3344444566677789999999999888873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.89 E-value=84 Score=34.25 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 366777777777888888888777765
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.83 E-value=9.6 Score=28.39 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 445 AWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
..+-++.+....+.|++....+.+.+|.+.+++..|+++|+-...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.30 E-value=2.3 Score=22.48 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFK 99 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~ 99 (598)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567788888899998888876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.68 E-value=16 Score=30.65 Aligned_cols=109 Identities=18% Similarity=0.158 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhc---CCHHHHHHH-------HHHHhhCCCCCCH-HHHHHHHH
Q 047932 156 TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKE---GFVDKAMEL-------FLQMKDENINPNV-VTYNSLIH 224 (598)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~-------~~~~~~~~~~~~~-~~~~~l~~ 224 (598)
++.|.+.++.....+ |.|...++....++... ....++.++ |++... +.|+- .++..+..
T Consensus 7 FE~ark~aea~y~~n-------P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-------PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH--------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-------cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHH
Confidence 456667777766655 56666665555554443 332334444 444444 34443 56666666
Q ss_pred HHHhcC----C-------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 225 CFSHAD----D-------WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 225 ~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
+|...+ + +++|.+.|++.... .|+..+|+.-+.... +|-.+..++.+.+
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 665432 2 34444455544443 667777776666542 3455555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.59 E-value=5.3 Score=22.47 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777766654
|
... |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=80.42 E-value=5 Score=22.13 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 047932 53 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGC 84 (598)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (598)
|+++.|..+|++++...|. ++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~--~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPK--SVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC--ChHHHHHHHHH
Confidence 5678899999999988775 88888877764
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 96.4 bits (238), Expect = 8e-21
Identities = 23/202 (11%), Positives = 66/202 (32%), Gaps = 4/202 (1%)
Query: 120 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP 179
+ A + T +A +L + +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL---L 163
Query: 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEA-KRL 238
YN ++ G ++G + + + +KD + P++++Y + + C D +R
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 239 FIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298
+M +G+ + +V++ E + ++ ++ P + L+
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 299 TGRVNHAKELFVSMESNGCMHD 320
+L + +++ C+ +
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.8 bits (213), Expect = 8e-18
Identities = 22/228 (9%), Positives = 59/228 (25%), Gaps = 4/228 (1%)
Query: 200 AMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVD 259
A L + +P L+ + + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 260 ELCKNGKMEEASRLLDL---MIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG 316
++ A LL + Q +YN +M G+ G + ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 317 CMHDVVSYTTLINGYCKTKNVEEALNLY-RKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375
D++SY + + + +M +G++ + + L ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 376 LKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE 423
K+ + + + + +L + +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 82.9 bits (203), Expect = 1e-16
Identities = 23/210 (10%), Positives = 57/210 (27%), Gaps = 4/210 (1%)
Query: 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKR 237
P ++ + +D Q ++ + C D A
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 238 LFIKMMDQ---GVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMD 294
L + Q + ++ ++ + G +E +L ++ G+ P+ Y +
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 295 GFCLTGRVNHA-KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR 353
+ + M G + L++ + ++ +
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 354 PTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383
P V S L ++ KL ++
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.2 bits (188), Expect = 9e-15
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 4/115 (3%)
Query: 420 SKYELDIISYSCLIDGLCKIGKLETAWELFQSL---SRVGLLPNVVTYNIMIHGLCNDGQ 476
++ +L A L + L + YN ++ G G
Sbjct: 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA 180
Query: 477 MDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMC 531
+ + ++ G+ PD + + + R ++ + + + + QMS
Sbjct: 181 FKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE-RCLEQMSQEGLKL 234
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.2 bits (175), Expect = 3e-13
Identities = 22/197 (11%), Positives = 66/197 (33%), Gaps = 3/197 (1%)
Query: 338 EEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTF 397
+ + + G + ++ + L ++ H L + + +YN
Sbjct: 112 QAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAV 171
Query: 398 IDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGK-LETAWELFQSLSRVG 456
+ G + G E + + + ++ D++SY+ + + + + T + +S+ G
Sbjct: 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231
Query: 457 LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSS 516
L + +++ + H + P V + ++ + + S
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV--YAKDGRVS 289
Query: 517 RGKLMSQMSSCWSMCFQ 533
KL + + + +
Sbjct: 290 YPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 5e-07
Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 25/233 (10%)
Query: 1 KPTSSISENEPSDPTTTAKLKESLRLTVKDGASIEKFLKERSKSSGQGDINLIT------ 54
+ + + P + L+E+ D +++ SGQ L+
Sbjct: 80 EDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQ-QQRLLAFFKCCL 138
Query: 55 ----PNEALCIFDYMLRM--HPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP 108
A + + +N + A+ + ++ + + GL P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 109 DLYTHSILINC------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNL 162
DL +++ + C ++ G + L++ R +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 163 FEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215
+ P V + ++ V + +L L +K
Sbjct: 259 KPTFSLP------PQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 3e-12
Identities = 78/511 (15%), Positives = 153/511 (29%), Gaps = 151/511 (29%)
Query: 26 LTVKDGASIEKFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCL 85
KD ++ K ++++ E D+++ S VS LF L
Sbjct: 33 FDCKD---VQDMPK-----------SILSKEE----IDHIIM---SKDAVSGTLRLFWTL 71
Query: 86 --------------AKNKHYDTVLSLFK-RLNSTGLFPDLY--THSILINCRIMEAAALF 128
+Y ++S K + +Y L N +F
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-----DNQVF 126
Query: 129 TKLRVFGCEPDVFTYNTLINGLCR-TGHTIVALNLFEEMANGNG----------EFGVVC 177
K V +P Y L L V + + + G+G + V C
Sbjct: 127 AKYNVSRLQP----YLKLRQALLELRPAKNVLI---DGVL-GSGKTWVALDVCLSYKVQC 178
Query: 178 K-PDTVTYNTIIDGVCK--EGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNE 234
K + + + C E ++ +L Q+ D N +++
Sbjct: 179 KMDFKIFWLNL--KNCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKL---RIHSIQA 232
Query: 235 AKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMD 294
R +K + N + +++ + N K A +L +I + T
Sbjct: 233 ELRRLLKSKP---YENCL---LVLLNVQ-NAKAWNA---FNLSCKILL--------TTRF 274
Query: 295 GFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML---PKG 351
+T ++ A +S++ H ++ T +E +L K L P+
Sbjct: 275 K-QVTDFLSAATTTHISLD-----HHSMTLTP-----------DEVKSLLLKYLDCRPQD 317
Query: 352 IRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEAL 411
+ V+T + L + + L +D +H + T I + ++ L E
Sbjct: 318 LPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA----EYR 372
Query: 412 ELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAW---------ELFQSLSRVGLL---P 459
++F L + S I L W + L + L+ P
Sbjct: 373 KMF-------DRLSVFPPSAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 460 NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490
T +I ++L+++ K
Sbjct: 422 KESTISI--------------PSIYLELKVK 438
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 6e-12
Identities = 65/478 (13%), Positives = 149/478 (31%), Gaps = 144/478 (30%)
Query: 175 VVCKPDTV--TYNTIIDGVCKEG------FVDKAMEL---FL--QMKDENINPNVVT--Y 219
++ D V T + + + FV++ + + FL +K E P+++T Y
Sbjct: 54 IIMSKDAVSGTL-RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQ 279
+N+ ++F K NV +++ +L +++
Sbjct: 113 IE-----QRDRLYNDN-QVFAKY-------NVS-------------RLQPYLKLRQALLE 146
Query: 280 IGVHPNTFVYNTLMDGF---CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKN 336
+ N + + G + V + ++ M+ + + L C +
Sbjct: 147 LRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFK------IFWLNL--KNCNSPE 196
Query: 337 --VEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALK-LFDEMQHN-------D 386
+E L ++ P + + + +H ++ L+ L + +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 387 VAADTYIYNTFIDGLCK------NGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIG 440
V + +N F + CK V + L + + + +S L
Sbjct: 253 VQ-NAKAWNAF-NLSCKILLTTRFKQVTDFL-----SAATTTHISLDHHS---MTL---T 299
Query: 441 KLETAWELF--------QSLSR--VGLLPNVVTYNIMIHGLCNDG-------------QM 477
E L Q L R + P ++ +I DG ++
Sbjct: 300 PDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKL 355
Query: 478 DKAHDLFLDM----EAKGVEPDCVIFN------TIMLGFIRNNETSKSSRGKLMSQMSSC 527
+ L++ E + + +F TI+L I + +++++
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-VVVNKLHK- 413
Query: 528 WSMCF-QPKTLICSISIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLDQDEL 584
+S+ QPK SI P + ++ + E +H + +D +
Sbjct: 414 YSLVEKQPKESTISI---------PS-------IYLELKVKLENEYALHRSIVDHYNI 455
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 51/333 (15%), Positives = 99/333 (29%), Gaps = 39/333 (11%)
Query: 178 KPD-TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN-VVTYNSLIHCFSHADDWNEA 235
P+ V + G V + + + Q + P VV S +
Sbjct: 68 TPEQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQRL 125
Query: 236 KRLFIKMMDQGVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV-YNTLM 293
+ + G+ P VV + ++ L L G+ P V +
Sbjct: 126 LPVLCQ--AHGLTPEQVVAIASHDGGKQALETVQAL--LPVLCQAHGLTPEQVVAIASNG 181
Query: 294 DGFCLTGRVNHAKELF---VSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350
G V + + VV+ + G + V+ L + +
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQ----QVVAIASNGGGKQALETVQRLLPVLCQAH-- 235
Query: 351 GIRPT-VVTYSTLFLGLFEVHQVEHALKLFD---EMQHNDVAADTYIYNTFIDGLCKNGF 406
G+ P VV ++ G + V+ L + + V A + G
Sbjct: 236 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA----IASNSGGKQALET 291
Query: 407 VLEALELFC-AIG-NSKYELDIISYSCLIDGLCKIGKLETAWELF-QSLSRVGLLPN-VV 462
V L + C A G + +++ + G + ++ + Q+ GL P VV
Sbjct: 292 VQRLLPVLCQAHGLTPQQ---VVAIASNGGGKQALETVQRLLPVLCQAH---GLTPQQVV 345
Query: 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495
G + + + +A G+ P+
Sbjct: 346 AIASHDGGKQALETVQRLLPVL--CQAHGLTPE 376
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)
Query: 320 DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT-VVTYSTLFLGLFEVHQVEHALKL 378
VV+ + G + V+ L + + G+ P VV ++ G + ++ L +
Sbjct: 191 QVVAIASNNGGKQALETVQRLLPVLCQAH--GLTPAQVVAIASHDGGKQALETMQRLLPV 248
Query: 379 FD---EMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFC-AIG-NSKYELDIISYSCLI 433
+ + V A + I G V L + C A G +++ +
Sbjct: 249 LCQAHGLPPDQVVA----IASNIGGKQALETVQRLLPVLCQAHGLTPDQ---VVAIASHG 301
Query: 434 DGLCKIGKLETAWELF-QSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491
G + ++ + Q+ GL P+ VV G + + + +A G
Sbjct: 302 GGKQALETVQRLLPVLCQAH---GLTPDQVVAIASHDGGKQALETVQRLLPVL--CQAHG 356
Query: 492 VEPD 495
+ PD
Sbjct: 357 LTPD 360
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 22/184 (11%)
Query: 320 DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT-VVTYSTLFLGLFEVHQVEHALKL 378
VV+ + G + ++ L + + G+ P VV ++ G + V+ L +
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAH--GLPPDQVVAIASNIGGKQALETVQRLLPV 282
Query: 379 FD---EMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFC-AIG-NSKYELDIISYSCLI 433
+ + V A + G V L + C A G +++ +
Sbjct: 283 LCQAHGLTPDQVVA----IASHGGGKQALETVQRLLPVLCQAHGLTPDQ---VVAIASHD 335
Query: 434 DGLCKIGKLETAWELF-QSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491
G + ++ + Q+ GL P+ VV G + + + +A G
Sbjct: 336 GGKQALETVQRLLPVLCQAH---GLTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHG 390
Query: 492 VEPD 495
+ PD
Sbjct: 391 LTPD 394
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 47/341 (13%), Positives = 97/341 (28%), Gaps = 41/341 (12%)
Query: 123 EAAALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT 181
+ + G P V + G L + + +
Sbjct: 447 RLLPVLCQ--THGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHG-------LTPDQV 497
Query: 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN-VVTYNSLIHCFSHADDWNEAKRLFI 240
V + I G V + + + Q + P+ VV S + +
Sbjct: 498 VAIASNIGGKQALATVQRLLPVLCQ--AHGLTPDQVVAIASNGGGKQALETVQRL----L 551
Query: 241 KMMDQ--GVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV-YNTLMDGF 296
++ Q G+ P VV + ++ L L G+ V + + G
Sbjct: 552 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRL--LPVLCQAHGLTQVQVVAIASNIGGK 609
Query: 297 CLTGRVNHAKELFVSMESNGCMHD-VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT 355
V + +++G VV+ + G + V+ L + + G+ P
Sbjct: 610 QALETVQRLLPVL--CQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPD 665
Query: 356 -VVTYSTLFLGLFEVHQVEHALKLFD---EMQHNDVAADTYIYNTFIDGLCKNGFVLEAL 411
VV ++ G + V+ L + + V A + G V L
Sbjct: 666 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA----IASNNGGKQALETVQRLL 721
Query: 412 ELFC-AIG-NSKYELDIISYSCLIDGLCKIGKLETAWELFQ 450
+ C A G +++ + G + ++ +
Sbjct: 722 PVLCQAHGLTPDQ---VVAIASNGGGKQALETVQRLLPVLC 759
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 28/206 (13%), Positives = 71/206 (34%), Gaps = 24/206 (11%)
Query: 159 ALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKE-GFVDKAMELF---LQMKDENINP 214
A +++E + +++ + + A+ F M + P
Sbjct: 169 AYEIYKEHEA--------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP 220
Query: 215 NVV--TYNSLIHCFSHADDWNEAKRLF---IKMMDQ-GVHPNVV-TFSVIVDELCKNGKM 267
++ T ++ C + + +A F I + ++ + P++ + +I K GK+
Sbjct: 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKI 280
Query: 268 EEASRL----LDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVS 323
++A + + G + L + + F +ES D+
Sbjct: 281 DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED 340
Query: 324 YTTLI-NGYCKTKNVEEALNLYRKML 348
+ + Y + KN ++A + K+
Sbjct: 341 FAIDVAKYYHERKNFQKASAYFLKVE 366
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 598 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.71 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.67 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.63 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.29 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.27 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.22 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.13 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.13 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.11 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.1 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.03 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.03 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.0 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.84 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.8 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.77 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.71 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.71 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.68 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.66 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.66 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.64 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.62 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.56 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.54 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.52 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.51 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.5 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.45 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.42 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.41 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.39 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.36 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.34 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.3 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.28 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.28 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.24 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.21 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.19 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.16 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.15 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.09 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.04 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.0 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.99 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.97 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.94 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.92 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.89 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.8 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.79 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.68 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.67 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.6 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.46 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.36 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.19 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.92 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.91 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.9 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.69 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.68 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.66 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.59 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.41 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.38 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.33 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.13 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.02 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.91 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.76 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.73 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.68 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.53 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.46 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.01 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.87 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.86 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.33 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.86 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.7 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.64 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.57 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.09 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.08 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.96 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.74 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.61 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.22 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.08 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.07 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.98 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.86 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.12 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.65 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.57 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.53 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.09 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.08 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.67 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.54 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.41 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.99 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.15 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.11 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=345.52 Aligned_cols=502 Identities=10% Similarity=0.007 Sum_probs=404.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAA 126 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~~ 126 (598)
.|.+..+...+... |. +++..|+.++..+.+.|++++|+.+|+++... .|+..++..+... ++++|+.
T Consensus 66 ~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 66 DGSFLKERNAQNTD----SL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCccCCCCCccccc----hH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 44455555555433 32 57889999999999999999999999999854 6787777665554 8999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC---------CCccccCCCHhHHHHHHHHHHhcCCH
Q 047932 127 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---------EFGVVCKPDTVTYNTIIDGVCKEGFV 197 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~li~~~~~~g~~ 197 (598)
+|+++... +++..+++.++.+|.+.|++++|.++|+++..... ......+.+..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99998654 57889999999999999999999999995332210 00001244688999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHH
Q 047932 198 DKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKR--L-FIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLL 274 (598)
Q Consensus 198 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 274 (598)
++|.++|++|.+.+.. +...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999986432 56677767665554433322221 1 444444444444556777788889999999999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCC
Q 047932 275 DLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRP 354 (598)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 354 (598)
+++.+. +++..++..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.... +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 999875 5789999999999999999999999999998775 4578889999999999999999999999998653 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 355 TVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLID 434 (598)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 434 (598)
+..++..++..|.+.|++++|..+|+++.+.. +.+..+++.++.++.+.|++++|+.+|+++.+.. +.+..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 78899999999999999999999999998753 5578899999999999999999999999998765 457889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHh
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK----GVEPD--CVIFNTIMLGFIR 508 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~ 508 (598)
+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999998863 347889999999999999999999999999876 56777 7899999999999
Q ss_pred cCCccccchhHHHHHHHhcccCCCCCC-hHHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhC
Q 047932 509 NNETSKSSRGKLMSQMSSCWSMCFQPK-TLICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNT 577 (598)
Q Consensus 509 ~g~~~~A~~~~~~~~~~~~~~~~~~p~-~~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~ 577 (598)
.|++++|.+ +++++.+. .|+ ...|.. .+...|+.++|...++++++++|+++.++..+...+
T Consensus 529 ~g~~~~A~~--~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 529 LKMYDAAID--ALNQGLLL-----STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp TTCHHHHHH--HHHHHHHH-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hcCHHHHHH--HHHHHHHh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999999 99999866 454 444444 567789999999999999999999999988876544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=329.40 Aligned_cols=466 Identities=12% Similarity=0.034 Sum_probs=390.9
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHH
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIM 122 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~ 122 (598)
.+.+.|++++|+.+|++++...| +..++..++..|.+.|++++|+.+|+++... .++..++..+... +++
T Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 93 DALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHH
Confidence 35678999999999999997665 5578899999999999999999999998654 5677777766655 999
Q ss_pred HHHHHHHHHHHc---------------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHH
Q 047932 123 EAAALFTKLRVF---------------GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTI 187 (598)
Q Consensus 123 ~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (598)
+|+++|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+...+..+
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l 240 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-------AKCYEAFDQL 240 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------chhhHHHHHH
Confidence 999999853221 123357899999999999999999999999999875 4456677777
Q ss_pred HHHHHhcCCHHHHHH--H-HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC
Q 047932 188 IDGVCKEGFVDKAME--L-FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN 264 (598)
Q Consensus 188 i~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (598)
...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++..|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh
Confidence 665554433332221 1 444444444445566777788899999999999999998765 57889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047932 265 GKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLY 344 (598)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 344 (598)
|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999998753 377889999999999999999999999998654 567889999999999999999999999
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 047932 345 RKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL 424 (598)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 424 (598)
+++.+... .+..+|..++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.
T Consensus 397 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 397 SKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 99987543 368899999999999999999999999998875 5578899999999999999999999999998764 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRV----GLLPN--VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVI 498 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 498 (598)
+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 552 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANV 552 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHH
Confidence 7899999999999999999999999999875 55777 7899999999999999999999999999876 668899
Q ss_pred HHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHH
Q 047932 499 FNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICS 540 (598)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~ 540 (598)
|..++.+|.+.|++++|.+ +++++.+. .|+.....
T Consensus 553 ~~~l~~~~~~~g~~~~A~~--~~~~~l~~-----~p~~~~~~ 587 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAIT--HLHESLAI-----SPNEIMAS 587 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHH--HHHHHHHH-----CTTCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHH--HHHHHHhc-----CCCChHHH
Confidence 9999999999999999999 99999865 67654433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-28 Score=242.45 Aligned_cols=379 Identities=13% Similarity=0.053 Sum_probs=234.6
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+.+.|++++|.+.|+.+++..|. ++..+..+...+.+.|++++|...++.+++..
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~----------------------- 63 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----------------------- 63 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------
Confidence 34677888888888888877776 77777777788888888888877777766431
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
+.+..+|..++..|.+.|++++|+..|+++.+.. |.+..+|..++..+.+.|++++|.+.|+++.
T Consensus 64 --------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 64 --------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp --------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred --------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3356677888888888888888888888887754 4456677888888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
+.+. .+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++++.+ +.+...
T Consensus 129 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 129 QYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 6532 245566667777777788888888777777652 3345667777777777777777777777776653 224555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
+..+...+...|++++|...+++..... +.+..++..+...+...|++++|+..|+++...++. +..++..+...+..
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 6666666666666666666666665542 234455555555555666666666655555544221 33444444444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 369 VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWEL 448 (598)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 448 (598)
.|++++|...|+++.+. . +.+..++..++..+...|++++|...
T Consensus 284 ~g~~~~A~~~~~~al~~-----------------------------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL-----------------------------------C-PTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp HSCHHHHHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh-----------------------------------C-cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555555544444443 2 33444455555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 449 FQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 449 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
++++.+.. +.+..++..++.++.+.|++++|++.|+++++.. +.+...+..+...+...|
T Consensus 328 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 328 YRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 55554431 2234445555555555555555555555555432 233445555555444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-28 Score=240.46 Aligned_cols=365 Identities=12% Similarity=0.059 Sum_probs=301.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047932 146 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHC 225 (598)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (598)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 3556777888888888888887764 4556677777778888888888888888777653 3467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHA 305 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 305 (598)
|...|++++|...|+++.+.. +.+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 888888888888888887753 3345577888888888888888888888888764 22455667777888888888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN 385 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 385 (598)
.+.|+++.+.. +.+..+|..+...+...|++++|...|+++...++. +...+..+...+...|++++|...+.++...
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888887764 446778888888888999999999999988876433 5778888888899999999999999988876
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047932 386 DVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYN 465 (598)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 465 (598)
. +.+..++..++.++...|++++|...|+++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 4 4568888999999999999999999999999775 4468889999999999999999999999998863 45788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcc
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCW 528 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 528 (598)
.++..+...|++++|++.++++.+.. +.+..++..++.+|.+.|++++|.+ .++++.+..
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~~~ 369 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM--HYKEAIRIS 369 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH--HHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhC
Confidence 99999999999999999999999864 6678899999999999999999999 999999883
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=242.87 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhCCCCcCHHHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVH---------QVEHALKLFDEMQHNDVAADTYIY 394 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~ 394 (598)
++.+|.+|++.|++++|+++|++|...|+.||..+|+.+|.+|++.+ ..+.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44444444444555555555555444444445555555544444332 245566666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCND 474 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (598)
+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047932 475 GQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR 508 (598)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 508 (598)
|++++|.+++++|.+.|+.|+..||+.++..|..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666655543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-28 Score=240.60 Aligned_cols=203 Identities=14% Similarity=0.194 Sum_probs=180.1
Q ss_pred HHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC--------
Q 047932 126 ALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF-------- 196 (598)
Q Consensus 126 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------- 196 (598)
.+.+++.+.+.... ...++.+|..|++.|++++|+++|++|.+.| ++||..+|++||.+|++.+.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG------VQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 34444544444333 3457889999999999999999999999998 89999999999999997665
Q ss_pred -HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHH
Q 047932 197 -VDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLD 275 (598)
Q Consensus 197 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 275 (598)
+++|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047932 276 LMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT 334 (598)
Q Consensus 276 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 334 (598)
+|.+.|+.||..+|+.|+.+|++.|+.++|.++|++|.+.+..|+..||+.++..|+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999988763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-26 Score=231.92 Aligned_cols=448 Identities=12% Similarity=0.005 Sum_probs=308.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 047932 75 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG 154 (598)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 154 (598)
+..+...+..+.+.|++++|+..|+++++. .|+..++..++.+|.+.|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------------~p~~~~~~~la~~~~~~g 53 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--------------------------------KEDPVFYSNLSACYVSVG 53 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------------------------------CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------------------------------CccHHHHHhHHHHHHHHh
Confidence 456667777777888888888888777753 246667777888888888
Q ss_pred ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047932 155 HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNE 234 (598)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 234 (598)
++++|+..|+++.+.+ |.+..+|..++.++.+.|++++|...|+.+...+. ++......++..+........
T Consensus 54 ~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 54 DLKKVVEMSTKALELK-------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSK 125 (514)
T ss_dssp CHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccC-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHH
Confidence 8888888888887765 45667788888888888888888888888877642 344444444444443333333
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------CcCHHHHHHHHHHHHh---cCCH
Q 047932 235 AKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV---------HPNTFVYNTLMDGFCL---TGRV 302 (598)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~---~g~~ 302 (598)
+.+.+..+...+..|+...+..................+...+..... +.+...+......+.. .|++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 333332222211111111111100000111111111111111111110 1224455555555554 7899
Q ss_pred HHHHHHHHHHHH-----CCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhc
Q 047932 303 NHAKELFVSMES-----NGC--------MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEV 369 (598)
Q Consensus 303 ~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (598)
++|...|+++.+ ... +.+...+..+...+...|++++|...++++...+.. ...+..+...+...
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHC
Confidence 999999998887 310 224566778888899999999999999998876443 77888888899999
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047932 370 HQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELF 449 (598)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (598)
|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...+
T Consensus 284 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988764 4567788889999999999999999999998765 346778888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCccccchhHHH
Q 047932 450 QSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV-EPD----CVIFNTIMLGFIR---NNETSKSSRGKLM 521 (598)
Q Consensus 450 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~ 521 (598)
+++.+.. +.+...+..++..+...|++++|...++++.+..- .++ ...+..++.++.. .|++++|.+ .+
T Consensus 362 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~--~~ 438 (514)
T 2gw1_A 362 SEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN--LL 438 (514)
T ss_dssp HHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH--HH
T ss_pred HHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH--HH
Confidence 9988753 23567788889999999999999999999876420 111 3488888999999 999999999 99
Q ss_pred HHHHhcccCCCCCChHHHH-H---HHHHhCCCCCChhhHHHhhhcCccccchhhHhh
Q 047932 522 SQMSSCWSMCFQPKTLICS-I---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLI 574 (598)
Q Consensus 522 ~~~~~~~~~~~~p~~~~~~-~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~ 574 (598)
+++.+. .|+..... . ++...|+.++|...++++++++|+++..+..+.
T Consensus 439 ~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 439 EKASKL-----DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHh-----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999865 45543332 2 566789999999999999999999998876663
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-25 Score=224.44 Aligned_cols=440 Identities=9% Similarity=-0.024 Sum_probs=294.6
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
|..+.+.|++++|+..|++++..+| ++.+|..++.++.+.|++++|+..|+++++..
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------- 69 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------------------- 69 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--------------------
Confidence 4445689999999999999999875 68899999999999999999999999988642
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
+.+..++..++.+|.+.|++++|...|+++...+ +++......++..+........+.+.+.
T Consensus 70 -----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 70 -----------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-------DFNDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp -----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-------SCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred -----------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356788899999999999999999999999876 4455555555555554444444444333
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCCHhhHHHHHHHHHh---CCCHHHHHHH
Q 047932 206 QMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV---------HPNVVTFSVIVDELCK---NGKMEEASRL 273 (598)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~ 273 (598)
.+...+..|+...+..-...............+...+..... +.+...+......+.. .|++++|...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 322221111111111100000000000001111111111000 1123344444444443 7788888888
Q ss_pred HHHHHh-----cCC--------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047932 274 LDLMIQ-----IGV--------HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEA 340 (598)
Q Consensus 274 ~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 340 (598)
++++.+ ... +.+..++..+...+...|++++|...++.+.+... +...+..+...+...|++++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHH
Confidence 888776 311 12345667777778888888888888888777642 277777788888888888888
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 047932 341 LNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS 420 (598)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 420 (598)
...++++...... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 290 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 290 YNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp GGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888887776432 55677777888888888888888888887764 445667777888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 047932 421 KYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL-PN----VVTYNIMIHGLCN---DGQMDKAHDLFLDMEAKGV 492 (598)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 492 (598)
. +.+..++..++..+...|++++|...++++.+.... ++ ...+..++.++.. .|++++|...++++.+..
T Consensus 368 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~- 445 (514)
T 2gw1_A 368 F-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD- 445 (514)
T ss_dssp S-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-
T ss_pred c-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-
Confidence 3 335677788888888888888888888887663211 11 2367778888888 888888888888888754
Q ss_pred CCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHH
Q 047932 493 EPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLIC 539 (598)
Q Consensus 493 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~ 539 (598)
+.+..++..+..+|.+.|++++|.. .++++.+. .|+....
T Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~-----~~~~~~~ 485 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQEDIDEAIT--LFEESADL-----ARTMEEK 485 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHH-----CSSHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHH--HHHHHHHh-----ccccHHH
Confidence 5567778888888888888888888 88888855 5665443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-23 Score=206.10 Aligned_cols=365 Identities=11% Similarity=0.043 Sum_probs=285.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 047932 137 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV 216 (598)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 216 (598)
+.+...+..++..|.+.|++++|+.+|+++.... +.+..+|..++.++...|++++|...|+++.+.+. .+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~ 94 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFT 94 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcH
Confidence 3467788999999999999999999999999875 56789999999999999999999999999988643 368
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHH------------HHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 217 VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV---VTFSVI------------VDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
.++..+..+|...|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...++.+.+..
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 899999999999999999999999998763 2233 444444 445889999999999999998864
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHH
Q 047932 282 VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYST 361 (598)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 361 (598)
+.+..++..++.+|...|++++|...|+.+.+.. +.+..++..++..|...|++++|+..|+++...... +...+..
T Consensus 174 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~ 250 (450)
T 2y4t_A 174 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAH 250 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 3477888999999999999999999999988764 457888999999999999999999999999875332 4444444
Q ss_pred H------------HHHHHhcCCHHHHHHHHHHHhhCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 047932 362 L------------FLGLFEVHQVEHALKLFDEMQHNDVAAD----TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD 425 (598)
Q Consensus 362 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 425 (598)
+ +..+...|++++|...|+++.+.. +.+ ...+..++.++.+.|++++|+..++++.... +.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~ 328 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence 4 778888999999999999988753 222 3467788888999999999999999988654 447
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHG------------LCNDG-----QMDKAHDLFLDM 487 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~~ 487 (598)
..+|..++.+|...|++++|...++++.+. .|+ ...+..+..+ |...| +.+++.+.|+++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 888999999999999999999999999884 343 5555555532 33334 566778888763
Q ss_pred -HHCC--CCCC-------HHHHHHHHHHHHhcCCccccch
Q 047932 488 -EAKG--VEPD-------CVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 488 -~~~~--~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
.+.. ..|+ ...|..+..+|...|+.+++.+
T Consensus 407 ~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 407 ALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 3321 1122 2367777788888888776544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-23 Score=207.16 Aligned_cols=349 Identities=11% Similarity=0.042 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcC
Q 047932 56 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFG 135 (598)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~ 135 (598)
..+...|..++..+|. ++..|..++..+.+.|++++|+.+|+++++..
T Consensus 9 ~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------------------ 56 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDGD------------------------------ 56 (450)
T ss_dssp --------------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------
T ss_pred ccccccccccccccHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------
Confidence 4556666777776765 88899999999999999999999999887531
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 047932 136 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215 (598)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 215 (598)
+.+..++..++.+|...|++++|+..|+++.+.+ +.+..++..++..|.+.|++++|.+.|+++...... +
T Consensus 57 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 127 (450)
T 2y4t_A 57 -PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-E 127 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-H
T ss_pred -CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C
Confidence 2356778888888888888889988888888865 456788888888888888999998888888875322 3
Q ss_pred H---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 216 V---VTYNSL------------IHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 216 ~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
. ..+..+ ...+...|++++|...|+++.+.. +.+..++..++.+|...|++++|...++.+.+.
T Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 455444 444888899999999999988763 446778888899999999999999999998876
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHc
Q 047932 281 GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL------------INGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~ 348 (598)
. +.+..++..+..++...|++++|...|+.+.... +.+...+..+ +..+...|++++|...|+++.
T Consensus 207 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 207 K-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp H-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 3467888889999999999999999999988763 3344445444 788889999999999999988
Q ss_pred cCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 047932 349 PKGIRPT----VVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL 424 (598)
Q Consensus 349 ~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 424 (598)
..... + ...+..+...+.+.|++++|...++++.+.. +.+...+..++.+|...|++++|...|+++.+.. +-
T Consensus 285 ~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~ 361 (450)
T 2y4t_A 285 KTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-EN 361 (450)
T ss_dssp HHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SS
T ss_pred hcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cc
Confidence 75322 2 3467888889999999999999999988763 5578889999999999999999999999998764 33
Q ss_pred CHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH
Q 047932 425 DIISYSCLIDG------------LCKIG-----KLETAWELFQS 451 (598)
Q Consensus 425 ~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 451 (598)
+...+..+..+ |...| +.+++.+.+++
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 56666666633 33334 55667777776
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-22 Score=209.34 Aligned_cols=402 Identities=11% Similarity=0.035 Sum_probs=257.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT 153 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (598)
.+..|..++..+.+.|++++|+..|++++... |+ +..++..++.+|.+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-----------------------------~~~~~~~la~~~~~~ 72 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PN-----------------------------EPVFYSNISACYIST 72 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TT-----------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CC-----------------------------CcHHHHHHHHHHHHc
Confidence 45678888899999999999999999988652 32 344455555555555
Q ss_pred CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047932 154 GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWN 233 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (598)
|++++|++.|+++.+.+ +.+..++..+...+...|++++|...|+.+ .. .|+ .....+..+...+...
T Consensus 73 g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~ 140 (537)
T 3fp2_A 73 GDLEKVIEFTTKALEIK-------PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNK 140 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHH
Confidence 55555555555555543 334555555555555555555555555422 11 111 1111122223333334
Q ss_pred HHHHHHHHHHHCC-----------------------------------CCCCHh-hHHHHHHHHH--------hCCCHHH
Q 047932 234 EAKRLFIKMMDQG-----------------------------------VHPNVV-TFSVIVDELC--------KNGKMEE 269 (598)
Q Consensus 234 ~a~~~~~~~~~~~-----------------------------------~~~~~~-~~~~l~~~~~--------~~g~~~~ 269 (598)
.|...++.+.... ..+... ....+...+. ..|++++
T Consensus 141 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 141 QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4444444443210 011111 1112222211 1246778
Q ss_pred HHHHHHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047932 270 ASRLLDLMIQIGVHPN-------TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALN 342 (598)
Q Consensus 270 a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 342 (598)
|..+++.+.+.... + ..++..+...+...|++++|...++.+.... |+...+..+...+...|++++|..
T Consensus 221 A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 221 STDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHH
Confidence 88888888765322 2 2245566677778888888888888887763 446777778888888888888888
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 343 LYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
.++++...... +..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 298 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 298 FFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 88888766432 56778888888888888888888888887754 3456677788888888888888888888887654
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 047932 423 ELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL-----LPNVVTYNIMIHGLCND----------GQMDKAHDLFLDM 487 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~ 487 (598)
+.+..++..+..++...|++++|...++++.+... ......+..+..++... |++++|+..|+++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 44567788888888888888888888888765321 11122234445666666 8888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 488 EAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 488 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
.+.. +.+...+..+..+|.+.|++++|.+ .++++.+.
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~ 491 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIE--LFEDSAIL 491 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHH--HHHHHHHh
Confidence 8764 5567788888888888888888888 88888855
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-23 Score=212.79 Aligned_cols=408 Identities=12% Similarity=0.067 Sum_probs=313.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+.+.|++++|+..|+++...+ +.+..+|..+..+|.+.|++++|++.|+++.+.+. .+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 96 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHH
Confidence 4567889999999999999999999999976 66789999999999999999999999999998643 378899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CCcCHH------
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG------VHPNTF------ 287 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~------ 287 (598)
..+..++...|++++|...|+. ... .|+.. ...+..+...+...++...++.+.... ..|+..
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSV-LSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-Hhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 9999999999999999999963 332 22221 122334445555677888888775531 111111
Q ss_pred ------------------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHH
Q 047932 288 ------------------------VYNTLMDGFC--------LTGRVNHAKELFVSMESNGCMHDV-------VSYTTLI 328 (598)
Q Consensus 288 ------------------------~~~~ll~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~ 328 (598)
....+...+. ..|++++|..+++.+.+.. +.+. .++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTG 250 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHH
Confidence 1222222221 1247899999999998764 2232 3466777
Q ss_pred HHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHH
Q 047932 329 NGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVL 408 (598)
Q Consensus 329 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 408 (598)
..+...|++++|...++++.... |+...+..+...+...|++++|...+.++.+.. +.+..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 88889999999999999998864 557888889999999999999999999998864 557888999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 409 EALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 409 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
+|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|+..|+++.
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998765 3467889999999999999999999999998863 3356788899999999999999999999987
Q ss_pred HCC-----CCCCHHHHHHHHHHHHhc----------CCccccchhHHHHHHHhcccCCCCCChHH-HHH---HHHHhCCC
Q 047932 489 AKG-----VEPDCVIFNTIMLGFIRN----------NETSKSSRGKLMSQMSSCWSMCFQPKTLI-CSI---SIMLQKDM 549 (598)
Q Consensus 489 ~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~---~~~~~~~~ 549 (598)
+.. .......+.....++... |++++|.. .++++.+. .|+... +.. ++...|+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~--~~~~a~~~-----~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK--LLTKACEL-----DPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH--HHHHHHHH-----CTTCHHHHHHHHHHHHHTTCH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH--HHHHHHHh-----CCCCHHHHHHHHHHHHHhccH
Confidence 642 111223355556778888 99999999 99999965 455433 222 66778999
Q ss_pred CCChhhHHHhhhcCccccchhhHh
Q 047932 550 SPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 550 ~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
++|...++++++++|++.......
T Consensus 479 ~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 479 DEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHH
Confidence 999999999999999998876544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-19 Score=179.21 Aligned_cols=401 Identities=11% Similarity=0.026 Sum_probs=320.1
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh----cCCH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK----EGFV 197 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 197 (598)
..+....+. .+..++..+...|.. .+++++|+..|++..+.+ +...+..|...|.. .+++
T Consensus 28 ~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~ 95 (490)
T 2xm6_A 28 EQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQDY 95 (490)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCH
Confidence 344444443 367788888888888 899999999999988754 46788888888888 8999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----CCCHHH
Q 047932 198 DKAMELFLQMKDENINPNVVTYNSLIHCFSH----ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK----NGKMEE 269 (598)
Q Consensus 198 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 269 (598)
++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++
T Consensus 96 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 96 AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998864 67788888888888 889999999999998875 56677788888887 789999
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 047932 270 ASRLLDLMIQIGVHPNTFVYNTLMDGFCL----TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCK----TKNVEEAL 341 (598)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 341 (598)
|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.
T Consensus 170 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 170 AREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998875 67788888888887 889999999999998875 66778888888876 78999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc-----CCHHHHHH
Q 047932 342 NLYRKMLPKGIRPTVVTYSTLFLGLFE----VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN-----GFVLEALE 412 (598)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~ 412 (598)
.+|++..+.+ +...+..+...+.. .++.++|..+|++..+.+ +...+..+...+... +++++|..
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 9999988764 55667777777777 899999999999998764 556777788888887 89999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 047932 413 LFCAIGNSKYELDIISYSCLIDGLCKIG---KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFL 485 (598)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 485 (598)
+|++..+.+ +...+..+...|...| ++++|++.|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999998865 5677888888888766 7899999999998863 67788889998888 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCccccchhHHHHHHHhcccCCCC-CChHHHHH-HH-HHhCCCCCChhhHHH
Q 047932 486 DMEAKGVEPDCVIFNTIMLGFIR----NNETSKSSRGKLMSQMSSCWSMCFQ-PKTLICSI-SI-MLQKDMSPGDTMFST 558 (598)
Q Consensus 486 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~-p~~~~~~~-~~-~~~~~~~~a~~~~~~ 558 (598)
+..+.+ +...+..+..+|.. .++.++|.. +++++.+. +.. |+...... +- ....+.+.+..+.++
T Consensus 392 ~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~--~~~~A~~~---~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~ 463 (490)
T 2xm6_A 392 KAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWA--WFDTASTN---DMNLFGTENRNITEKKLTAKQLQQAELLSQQ 463 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH--HHHHHHHH---HCCHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH--HHHHHHHC---CCCCcCCHHHHHHHHhcCHhHHHHHHHHHHH
Confidence 999876 67788889888988 899999999 99999876 322 22222211 11 111234555666777
Q ss_pred hhhcCccccchh
Q 047932 559 ALLMDPDCSCDL 570 (598)
Q Consensus 559 ~l~~~P~~~~~~ 570 (598)
.++..|+++..-
T Consensus 464 ~~~~~~~~~~~~ 475 (490)
T 2xm6_A 464 YIEKYAPEAWAR 475 (490)
T ss_dssp HHHHHCHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.5e-20 Score=176.72 Aligned_cols=321 Identities=12% Similarity=0.030 Sum_probs=253.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVD 259 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (598)
++..+..+...+...|++++|...|+++.+... .+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 356788889999999999999999999988643 378899999999999999999999999998863 336678889999
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCC--cCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047932 260 ELCKNGKMEEASRLLDLMIQIGVH--PNTFVYNTL------------MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYT 325 (598)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 325 (598)
++...|++++|...++.+.+.... .+...+..+ ...+...|++++|...++.+.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999886420 244444444 577888999999999999988764 45778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH----------
Q 047932 326 TLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYN---------- 395 (598)
Q Consensus 326 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 395 (598)
.+...+...|++++|...++++....+ .+..++..+...+...|++++|...++++.+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 889999999999999999999887643 367888888889999999999999999888753 33333332
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 396 --TFIDGLCKNGFVLEALELFCAIGNSKYELDI----ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 396 --~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 2356688889999999999888865422 33 235567788888999999999999888752 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047932 470 GLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR 508 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 508 (598)
++...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 8889999999999999988764 4456666666665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-19 Score=175.45 Aligned_cols=319 Identities=11% Similarity=0.053 Sum_probs=264.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
++..+..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH
Confidence 45678889999999999999999999999875 5678899999999999999999999999998863 336788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHH------------HHHHHhCCCHHHHHHHHHHHHhcCCCc
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVH--PNVVTFSVI------------VDELCKNGKMEEASRLLDLMIQIGVHP 284 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (598)
+..+..++...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++.+.+.. +.
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 999999999999999999999999876320 244445444 578899999999999999998875 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHH----
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYS---- 360 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---- 360 (598)
+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++...... +...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH
Confidence 77889999999999999999999999999874 567889999999999999999999999999876432 333332
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 361 --------TLFLGLFEVHQVEHALKLFDEMQHNDVAADT----YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIIS 428 (598)
Q Consensus 361 --------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 428 (598)
.+...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|...++++.+.. +.+..+
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 308 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHH
Confidence 23667889999999999999998864 2233 335567889999999999999999998764 447889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 047932 429 YSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLC 472 (598)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 472 (598)
+..+..++...|++++|...|+++.+. .|+ ...+..+..+..
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 999999999999999999999999985 444 555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-18 Score=172.13 Aligned_cols=364 Identities=13% Similarity=0.039 Sum_probs=291.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHH
Q 047932 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRV 133 (598)
Q Consensus 58 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~ 133 (598)
++..+...... .++.++..+...|.. .+++++|+..|++..+.|
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------------- 73 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------------- 73 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----------------------------
Confidence 45556555442 377888888888887 778888888888776542
Q ss_pred cCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh----cCCHHHHHHHHH
Q 047932 134 FGCEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK----EGFVDKAMELFL 205 (598)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 205 (598)
+...+..|...|.. .+++++|...|++....+ +...+..|...|.. .+++++|...|+
T Consensus 74 -----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 139 (490)
T 2xm6_A 74 -----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFR 139 (490)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 45567777888887 888999999999887754 46777778888887 788999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHH
Q 047932 206 QMKDENINPNVVTYNSLIHCFSH----ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK----NGKMEEASRLLDLM 277 (598)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 277 (598)
+..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.++|++.
T Consensus 140 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 140 LAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKS 213 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 888764 66778888888877 788999999999888864 66777788888887 88999999999998
Q ss_pred HhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHcc
Q 047932 278 IQIGVHPNTFVYNTLMDGFCL----TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCK----TKNVEEALNLYRKMLP 349 (598)
Q Consensus 278 ~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 349 (598)
.+.| +...+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|+..|++..+
T Consensus 214 ~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 214 ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 8865 56677777777776 788999999999988765 56667777777777 8899999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhCC
Q 047932 350 KGIRPTVVTYSTLFLGLFEV-----HQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG---FVLEALELFCAIGNSK 421 (598)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 421 (598)
.+ +...+..+...+... +++++|..+|++..+.+ +...+..+...|...| ++++|..+|++..+.+
T Consensus 288 ~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 288 QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 64 556677777777776 89999999999988865 4566777777777766 7889999999988764
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047932 422 YELDIISYSCLIDGLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 422 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 491 (598)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|...|++..+.+
T Consensus 362 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 362 ---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 67888888999988 889999999999998864 56778888888887 899999999999998875
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-18 Score=174.98 Aligned_cols=141 Identities=14% Similarity=0.165 Sum_probs=94.6
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHh
Q 047932 62 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVF 141 (598)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~ 141 (598)
|+.+++.+|. +..+|..++.. .+.|++++|+.+|+++++. .| .+..
T Consensus 2 le~al~~~P~--~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P-----------------------------~~~~ 47 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FP-----------------------------SSGR 47 (530)
T ss_dssp HHHHHHHCTT--CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CT-----------------------------TCHH
T ss_pred hhhHhhhCCC--CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CC-----------------------------CCHH
Confidence 6677778886 89999999984 7789999999999998865 23 2455
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHH-HhcCCHHHHHH----HHHHHhhC-CCCC-
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGV-CKEGFVDKAME----LFLQMKDE-NINP- 214 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~-~~~~- 214 (598)
.|..++..+.+.|++++|..+|++++... |+...|..++... ...|+.+.|.+ +|+..... |..|
T Consensus 48 ~w~~~~~~~~~~~~~~~a~~~~~ral~~~--------p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~ 119 (530)
T 2ooe_A 48 FWKLYIEAEIKAKNYDKVEKLFQRCLMKV--------LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTC--------CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc
Confidence 67777777777777777777777777643 4666666665432 34456555544 55555432 3332
Q ss_pred CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 047932 215 NVVTYNSLIHCFSH---------ADDWNEAKRLFIKMMD 244 (598)
Q Consensus 215 ~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 244 (598)
+...|...+..... .|+++.|..+|++.++
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 44566665555443 5677777777777766
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-19 Score=179.43 Aligned_cols=422 Identities=10% Similarity=-0.002 Sum_probs=306.7
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
|++.++.+ +-+...|..++. +.+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|+++
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444443 347788999998 478999999999999999875 667889999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHhhHHHHHHHHHh---------CCCHHHHH
Q 047932 208 KDENINPNVVTYNSLIHCF-SHADDWNEAKR----LFIKMMDQ-GVHP-NVVTFSVIVDELCK---------NGKMEEAS 271 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~ 271 (598)
... .|+...|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+..... .|+++.|.
T Consensus 73 l~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 73 LMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp TTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred Hhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 986 36888887777533 34566666554 77766553 4433 45677777766554 68899999
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------h
Q 047932 272 RLLDLMIQIGVHPNTFVYNTLMDGF-------------CLTGRVNHAKELFVSME------SNG---CMHD--------V 321 (598)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~~~--------~ 321 (598)
.+|++.++.........|....... ...+++..|..++.... +.. ++|+ .
T Consensus 151 ~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 151 RVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 9999999842221123443332211 12456777777776532 211 2333 2
Q ss_pred hhHHHHHHHHHhc----CCH----HHHHHHHHHHccCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 047932 322 VSYTTLINGYCKT----KNV----EEALNLYRKMLPKGIRPTVVTYSTLFLGLFE-------VHQVE-------HALKLF 379 (598)
Q Consensus 322 ~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~ 379 (598)
..|...+...... ++. +.+..+|+++....+ .+...|..++..+.. .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 4555555433322 232 477888998887633 367788888887765 68876 899999
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047932 380 DEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDI-ISYSCLIDGLCKIGKLETAWELFQSLSRVGLL 458 (598)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (598)
++..+.-.+.+...+..++..+.+.|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|..+|++..+.. +
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~ 387 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 387 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-T
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 999973235578899999999999999999999999999863 2233 589999999999999999999999998852 2
Q ss_pred CCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCC--
Q 047932 459 PNVVTYNIMIHG-LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPK-- 535 (598)
Q Consensus 459 p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~-- 535 (598)
.+...|...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|.. +++++.... +..|+
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~--~~~~al~~~--~~~~~~~ 462 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV--LFERVLTSG--SLPPEKS 462 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHH--HHHHHHHSC--CSCGGGC
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHH--HHHHHHhcc--CCCHHHH
Confidence 233333333322 336899999999999998864 5578999999999999999999999 999999761 23343
Q ss_pred hHHHHH---HHHHhCCCCCChhhHHHhhhcCccccc
Q 047932 536 TLICSI---SIMLQKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 536 ~~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
...|.. .....|+.+.+..+.+++++..|+++.
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~ 498 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 498 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhcc
Confidence 224433 455679999999999999999997554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-19 Score=170.41 Aligned_cols=293 Identities=13% Similarity=0.044 Sum_probs=214.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 047932 213 NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292 (598)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (598)
+.+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455666677777777788888888888777653 3345566667777777788888888888777753 3356677777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCC
Q 047932 293 MDGFCLTG-RVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQ 371 (598)
Q Consensus 293 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 371 (598)
...+...| ++++|...|+++.... +.+...|..+...+...|++++|+..++++...... +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 77777787 7888888888877654 445667777788888888888888888877765332 34556667777888888
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHHcCCHH
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK--------YELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 443 (598)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888887764 4567778888888888888888888888776421 1334567888888888889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCc
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF-IRNNET 512 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~ 512 (598)
+|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 9999988887753 2356778888888888899999999998887754 45677777787777 455544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-18 Score=167.22 Aligned_cols=294 Identities=12% Similarity=0.002 Sum_probs=165.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVV 217 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 217 (598)
.+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 91 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPV 91 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHH
Confidence 355566667777777777777777777777654 4455566666677777777777777777776642 22556
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHAD-DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGF 296 (598)
Q Consensus 218 ~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (598)
.+..+...+...| ++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+...+
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 6666677777777 6777777777766543 22445566666666666666666666666665532 2344455555666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047932 297 CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHAL 376 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (598)
...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++........
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------- 227 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG--------------------- 227 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS---------------------
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc---------------------
Confidence 66666666666666665543 33445555555555556666666555555443210000
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047932 377 KLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVG 456 (598)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (598)
.....+....++..+..++...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 228 ------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 228 ------NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp ------CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred ------ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 000002223444455555555555555555555554432 2244455555555555555555555555555431
Q ss_pred CCCCHHHHHHHHHHH
Q 047932 457 LLPNVVTYNIMIHGL 471 (598)
Q Consensus 457 ~~p~~~~~~~l~~~~ 471 (598)
+.+...+..+..++
T Consensus 301 -p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 301 -RDDTFSVTMLGHCI 314 (330)
T ss_dssp -SCCHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHH
Confidence 11344444444444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-19 Score=171.96 Aligned_cols=305 Identities=12% Similarity=0.039 Sum_probs=151.8
Q ss_pred cCCChHHHHH-HHHHHHHcCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 51 NLITPNEALC-IFDYMLRMHPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 51 ~~g~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
..|++++|+. .|++++...|..| +...+..++..+.+.|++++|+..|+++++..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 3455555555 5555444433311 23345555555555555555555555555431
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
+.+..++..++.+|.+.|++++|+..|+++.+.+ +.+..++..+...+...|++++|.+.++++
T Consensus 95 ---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 95 ---------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------PDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1233445555555555555555555555555543 334555555555555555555555555555
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-CH
Q 047932 208 KDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP-NT 286 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~ 286 (598)
...... +...+..+... .. . ..+ ...+.. +..+...|++++|...++++.+..... +.
T Consensus 159 ~~~~~~-~~~~~~~~~~~-------~~-------~----~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 159 LRYTPA-YAHLVTPAEEG-------AG-------G----AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp HHTSTT-TGGGCC----------------------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred HHhCcC-cHHHHHHHHHH-------hh-------h----hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccH
Confidence 543211 11111100000 00 0 000 000001 222225566666666666665543111 35
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGL 366 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (598)
.++..+..++...|++++|...++++.... +.+...+..+...+...|++++|+..++++..... .+...+..+...+
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~ 295 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 556666666666666666666666665543 33455666666666666666666666666655432 2455666666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC----------cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVA----------ADTYIYNTFIDGLCKNGFVLEALELFCA 416 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 416 (598)
...|++++|...|+++.+.... ....++..+..++...|++++|..++++
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 6666666666666666543110 1156677777777777777777766654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-19 Score=171.56 Aligned_cols=280 Identities=14% Similarity=-0.004 Sum_probs=175.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (598)
.+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555442 2234444445555555555555555555554442 223444444455555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047932 298 LTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALK 377 (598)
Q Consensus 298 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 377 (598)
..|++++|...++.+.... +.+...+..+... .. . ..+ ...+..+. .+...|++++|..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~----~~~-~~~~~~~~-~~~~~~~~~~A~~ 202 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------G----AGL-GPSKRILG-SLLSDSLFLEVKE 202 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------------------CTTH-HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------h----hcc-cHHHHHHH-HHhhcccHHHHHH
Confidence 5555555555555544432 1111111110000 00 0 000 00011222 2337888999999
Q ss_pred HHHHHhhCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047932 378 LFDEMQHNDVAA-DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVG 456 (598)
Q Consensus 378 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (598)
.++++.+..... +..++..+...+...|++++|...|+++.... +.+..++..++.++...|++++|+..++++.+..
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999888764221 57888889999999999999999999988764 4467889999999999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 457 LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD-----------CVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 457 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
+.+...+..+..++.+.|++++|...|+++.+.. +.+ ..+|..+..+|...|++++|.. ++++..
T Consensus 282 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~l 357 (368)
T 1fch_A 282 -PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA--ADARDL 357 (368)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH--HHTTCH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH--hHHHHH
Confidence 3357788889999999999999999999988642 222 6889999999999999999988 776544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-17 Score=163.68 Aligned_cols=396 Identities=12% Similarity=-0.053 Sum_probs=245.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-Ccc-ccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE-FGV-VCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE----- 210 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 210 (598)
.....|+.|..++...|++++|++.|++..+.... .+. ..+....+|+.+..+|...|++++|...++++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987652100 000 01334678999999999999999999999887642
Q ss_pred C-C-CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhCCCHHHHHHHHHHHHhcCCC
Q 047932 211 N-I-NPNVVTYNSLIHCFSH--ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDE---LCKNGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 211 ~-~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~ 283 (598)
+ . .....++..+..++.. .+++++|++.|++.++.. +-+...+..+..+ +...++.++|++.+++.++.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1 1234567666666655 457999999999998863 2245555555444 445678888999999988864 3
Q ss_pred cCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHH
Q 047932 284 PNTFVYNTLMDGFCL----TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTY 359 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 359 (598)
.+..++..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|+..++++.+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 355566655555544 467889999999988764 557788889999999999999999999999876433 56666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 047932 360 STLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI 439 (598)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 439 (598)
..+..+|...+.... ... ...........+.++.|...++++.... +.+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 666665543211110 000 0001111122334677888888887654 33556778889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047932 440 GKLETAWELFQSLSRVGLLPNV--VTYNIMIH-GLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSS 516 (598)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 516 (598)
|++++|+..|++..+....+.. ..+..+.. .....|++++|+..|++.++. .|+.......+ ..+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHH
Confidence 9999999999998885433322 12333333 234778999999999999875 45543332222 2334
Q ss_pred hhHHHHHHHhcccCCCCCCh-HHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhH
Q 047932 517 RGKLMSQMSSCWSMCFQPKT-LICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLES 572 (598)
Q Consensus 517 ~~~~~~~~~~~~~~~~~p~~-~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~ 572 (598)
+ ++++.++. .|+. ..+.. ++...|+.++|++.|++++++.|.+|.+...
T Consensus 417 ~--~~~~~l~~-----~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 417 K--IAKMRLSK-----NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp H--HHHHHHHH-----CC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred H--HHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 5 66666644 3432 33333 6677899999999999999999999887643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-16 Score=161.26 Aligned_cols=386 Identities=10% Similarity=-0.045 Sum_probs=247.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----
Q 047932 179 PDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE--------NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG---- 246 (598)
Q Consensus 179 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 246 (598)
.....|+.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999887542 112245688999999999999999999998876421
Q ss_pred --C-CCCHhhHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCC
Q 047932 247 --V-HPNVVTFSVIVDELCK--NGKMEEASRLLDLMIQIGVHPNTFVYNTLMDG---FCLTGRVNHAKELFVSMESNGCM 318 (598)
Q Consensus 247 --~-~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~ 318 (598)
. .....++.....++.. .+++++|+..|++.++... .+...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 1123455555555544 4568899999999888642 244555555444 344577788888888887764 3
Q ss_pred CChhhHHHHHHHHHh----cCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 047932 319 HDVVSYTTLINGYCK----TKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIY 394 (598)
Q Consensus 319 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 394 (598)
.+...+..+...+.. .+++++|.+.+++...... .+..++..+...+...|++++|...+.++.+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 455556555554443 4567888888888776543 366778888888888899999999888888764 4456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCND 474 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (598)
..+..+|...+....+.. ...........+.++.|...+++..+.. +.+..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 666665543221111100 0001111122234788999999988753 23456788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCCCC
Q 047932 475 GQMDKAHDLFLDMEAKGVEPDC--VIFNTIML-GFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDMSP 551 (598)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 551 (598)
|++++|+..|+++++....+.. ..+..+.. .+...|++++|+. .++++++. .|+........ ..
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~--~y~kal~i-----~~~~~~~~~~~------~~ 414 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH--HFIEGVKI-----NQKSREKEKMK------DK 414 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH--HHHHHHHS-----CCCCHHHHHHH------HH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHhc-----CcccHHHHHHH------HH
Confidence 9999999999999986533222 12233332 3457899999999 99999855 67765444322 22
Q ss_pred ChhhHHHhhhcCccccchhhHhhhhCCCCcc-chhhheecccccccCC
Q 047932 552 GDTMFSTALLMDPDCSCDLESLIHNTDLDQD-ELAYVITNSTWLLMPN 598 (598)
Q Consensus 552 a~~~~~~~l~~~P~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 598 (598)
+...++++++.+|+++.++..|........+ +.|....++|.++.|.
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4567889999999999999998665554333 6788899999988763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.8e-18 Score=162.98 Aligned_cols=234 Identities=13% Similarity=0.054 Sum_probs=149.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..++..+.+.|++++|+..|+++.+.. +.+..+|..+...+...|++++|+..|+++.... +.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 45568888888888899999999998888865 5567888888888888888888888888888753 236778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhH----------HHHHHHHHhCCCHHHHHHHHHHHHhcCCC-cCH
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTF----------SVIVDELCKNGKMEEASRLLDLMIQIGVH-PNT 286 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~ 286 (598)
+..+..+|...|++++|...|+++.+.. |+ ...+ ..+...+...|++++|...++++.+.... .+.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 8888888888888888888888887642 22 1122 22355666666666666666666665321 145
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGL 366 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (598)
.++..+...+...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|+++....+. +..++..+..++
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 556666666666666666666666665543 334555556666666666666666666655544221 345555555555
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 047932 367 FEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~ 384 (598)
...|++++|...|+++.+
T Consensus 292 ~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHTCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555555555555555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=162.12 Aligned_cols=231 Identities=12% Similarity=-0.023 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (598)
.+..+...+...|++++|...|+++++.. +.+..++..+..++...|++++|+..|+++++.. +.+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555544432 2234444445555555555555555555554432 223444455555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC-CCHHHHHHHHHHH
Q 047932 298 LTGRVNHAKELFVSMESNGCMHD----------VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR-PTVVTYSTLFLGL 366 (598)
Q Consensus 298 ~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 366 (598)
..|++++|...++++.+.. +.+ ...+..+...+...|++++|+..++++...... .+..++..+...+
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 5555555555555544431 101 111222344445555555555555555443211 1344444444444
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAW 446 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 446 (598)
...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 44455555555544444432 2234444444444444444444444444444332 223444444444444444444444
Q ss_pred HHHHHHH
Q 047932 447 ELFQSLS 453 (598)
Q Consensus 447 ~~~~~~~ 453 (598)
..|+++.
T Consensus 302 ~~~~~al 308 (365)
T 4eqf_A 302 SNFLTAL 308 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-18 Score=162.04 Aligned_cols=283 Identities=12% Similarity=0.087 Sum_probs=84.8
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+-+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +
T Consensus 13 l~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~-------------------- 59 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------D-------------------- 59 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------C--------------------
Confidence 34678899999999998 24469999999999999999999999653 2
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
|...|..++..+...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++
T Consensus 60 ----------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--- 118 (449)
T 1b89_A 60 ----------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--------ARESYVETELIFALAKTNRLAELEEFIN--- 118 (449)
T ss_dssp -------------------------------------------------------------------CHHHHTTTTT---
T ss_pred ----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHHhCCHHHHHHHHc---
Confidence 3334445555555566666666654444432 2334555556666666666655555542
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
.|+..+|+.++..|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+
T Consensus 119 ----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~ 179 (449)
T 1b89_A 119 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 179 (449)
T ss_dssp ----CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHH
T ss_pred ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchh
Confidence 134456666666666666666666666544 24555666666666666666666555 14555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
|..++.+|...|+++.|......+. ..+.....++..|.+.|.+++|+.+++...... +-....|+-+...+++
T Consensus 180 Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 180 WKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 6666666666666666643333221 122223345555666666666666666655443 2234445544444443
Q ss_pred --cCCHHHHHHHHHHHhhCCCCc------CHHHHHHHHHHHHHcCCHHHHHH
Q 047932 369 --VHQVEHALKLFDEMQHNDVAA------DTYIYNTFIDGLCKNGFVLEALE 412 (598)
Q Consensus 369 --~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 412 (598)
.++..+.++.|.. +.++++ +...|..++..|...++++.|..
T Consensus 254 y~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 254 FKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp TCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 2222233332221 111222 23345555556666666665554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-14 Score=150.33 Aligned_cols=396 Identities=14% Similarity=0.166 Sum_probs=275.5
Q ss_pred cCCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-cHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHP-SPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-RIMEAAALF 128 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~a~~~~ 128 (598)
..|.+.+|+++++++.-... ...+....+.++..-.+. +..+..+...+.... .. ......++.. .+++|..+|
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d~-~eIA~Iai~lglyEEAf~IY 1072 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--DA-PDIANIAISNELFEEAFAIF 1072 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--cH-HHHHHHHHhCCCHHHHHHHH
Confidence 67888888888888873321 113445566666665555 445555555555422 11 1122222222 788888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
++... .....+.+ +...|++++|.++.++. .+..+|..+..++...|++++|++.|.+.
T Consensus 1073 kKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1073 RKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 87631 11222222 22677888888887754 23778888999999999999999998664
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
.|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...++ + .++...
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 277888889999999999999999998877753 33333445888888888888544332 2 345566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.. +..+|..+..+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhh
Confidence 777888899999999999999875 368889999999999999999998773 56888888888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--CCHHHHH
Q 047932 369 VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI--GKLETAW 446 (598)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~ 446 (598)
.|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|+.+...|++. ++..++.
T Consensus 1263 ~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888866542 3356677788999999999999999998888665 44556777777777764 3555556
Q ss_pred HHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHH
Q 047932 447 ELFQSLSRVGLLP------NVVTYNIMIHGLCNDGQMDKAHDLF-------------LDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 447 ~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
++|..-.. +++ +...|..++..|.+.|+++.|...+ +..+. -..|...|...+.-|.
T Consensus 1337 k~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1337 ELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHH
Confidence 65554322 222 4667888999999999999988332 22221 2446777777777777
Q ss_pred hcC
Q 047932 508 RNN 510 (598)
Q Consensus 508 ~~g 510 (598)
..+
T Consensus 1413 ~~~ 1415 (1630)
T 1xi4_A 1413 EFK 1415 (1630)
T ss_pred hhC
Confidence 444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-17 Score=156.46 Aligned_cols=280 Identities=9% Similarity=-0.058 Sum_probs=163.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..++..+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHH
Confidence 44556777888888888888888888888765 4567788888888888888888888888887753 336777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHH-HH-HH
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL-MD-GF 296 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~-~~ 296 (598)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+ ++......+ .. .+
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFF 148 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHH
Confidence 8888888888888888888888887753 22222333221000 000000111 11 13
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047932 297 CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHAL 376 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (598)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++..... .+..++..+...+...|++++|.
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 34445555555555554432 22444455555555555555555555555544322 13445555555555556666666
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-----------CHHHHHHHHHHHHHcCCHHHH
Q 047932 377 KLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL-----------DIISYSCLIDGLCKIGKLETA 445 (598)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A 445 (598)
..++++.+.. +.+...+..+...+...|++++|...++++....... +..++..+..++...|++++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 6665555442 3345555556666666666666666666555432111 345566666666666666666
Q ss_pred HHHHHHH
Q 047932 446 WELFQSL 452 (598)
Q Consensus 446 ~~~~~~~ 452 (598)
..++++.
T Consensus 306 ~~~~~~~ 312 (327)
T 3cv0_A 306 ELTYAQN 312 (327)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 6666543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-17 Score=152.68 Aligned_cols=218 Identities=10% Similarity=0.066 Sum_probs=91.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCC-CHHHHHHHHHHHHhcC
Q 047932 292 LMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRP-TVVTYSTLFLGLFEVH 370 (598)
Q Consensus 292 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 370 (598)
+.++|...|+++.|...++.. .+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 334444444444444433221 12333444444444444444444444444444332212 2333333334444444
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-H--HHHHHHHHHHcCCHHHHHH
Q 047932 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDII-S--YSCLIDGLCKIGKLETAWE 447 (598)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~ 447 (598)
++++|+..+++ +.+...+..++..+.+.|++++|...|+++.+.. |+.. . ...++..+...|++++|..
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 44444444443 2233444444444444444444444444444332 1211 0 0111122222344555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccc-cchhHHHHHHH
Q 047932 448 LFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSK-SSRGKLMSQMS 525 (598)
Q Consensus 448 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 525 (598)
+|+++.+. .+.+...++.+..++.+.|++++|...|+++++.. +.+..++..++.++...|+.++ +.+ +++++.
T Consensus 188 ~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~--~~~~~~ 262 (291)
T 3mkr_A 188 IFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNR--YLSQLK 262 (291)
T ss_dssp HHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHH--HHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHH--HHHHHH
Confidence 55554443 12234444444445555555555555555544432 3344444444444444444433 234 444444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-15 Score=155.30 Aligned_cols=380 Identities=12% Similarity=0.125 Sum_probs=288.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHhc----cHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 047932 73 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTHSILINC----RIMEAAALFTKLRVFGCEPDVFTYNTL 146 (598)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (598)
.++.--...+..|...|.+.+|++++++..-.+- +-+...-+.++.. +.....+..++.... ....+
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhc-------cHHHH
Confidence 4666677888899999999999999999984321 1122223333333 444444444444321 23457
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF 226 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (598)
...+...|++++|..+|++.... ....+.++. ..+++++|.++.++.. +..+|..+..++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-----------~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-----------TSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-----------HHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHH
Confidence 88899999999999999996421 222333333 6788999999998662 578899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAK 306 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 306 (598)
...|++++|++.|.+. .+...|..++.++.+.|++++|.+.+....+.. +++.....++.+|++.++++...
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence 9999999999999663 377788899999999999999999999988764 34444446889999999988644
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 307 ELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND 386 (598)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 386 (598)
... . .++...|..+...|...|++++|...|..+ ..|..+..++.+.|++++|.+.+++..
T Consensus 1188 ~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1188 EFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred HHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 332 2 346677778999999999999999999985 478999999999999999999998873
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047932 387 VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNI 466 (598)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 466 (598)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|.-
T Consensus 1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1249 ---STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred ---CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 5678999999999999999999876643 3467778899999999999999999999887643 223446666
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCccccch
Q 047932 467 MIHGLCN--DGQMDKAHDLFLDMEAKGVEP------DCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 467 l~~~~~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+...+++ -++..++.++|..-. +++| +...|..++..|.+.|+++.|..
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6666664 456666666665433 3444 56789999999999999998773
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5e-17 Score=155.27 Aligned_cols=244 Identities=9% Similarity=-0.047 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELC 262 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (598)
.+..+...+...|++++|..+|+++.+... .+...+..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 344455555555555555555555544321 244444445555555555555555555554431 223334444444444
Q ss_pred hCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HH-HHHhcCCHHHH
Q 047932 263 KNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL-IN-GYCKTKNVEEA 340 (598)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~A 340 (598)
..|++++|.+.++.+.+.... +...+..+... .++......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 444444444444444433111 11111100000 0000000011 11 14444555555
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 047932 341 LNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS 420 (598)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 420 (598)
...++++...... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 158 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555443221 34444555555555555555555555544432 223444444444445555555555555444433
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 421 KYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
. +.+..++..+..++...|++++|...++++.+
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2 22344444444444444444444444444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-16 Score=148.26 Aligned_cols=251 Identities=11% Similarity=0.033 Sum_probs=142.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHH
Q 047932 190 GVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEE 269 (598)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (598)
-....|++..|+..++........+.......+.++|...|+++.|+..++. .-+|+..++..+...+...|+.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445677777777666654432111123445556677777777777665543 123455566666666666667777
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 270 ASRLLDLMIQIGVHP-NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 270 a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777666554323 344555555666667777777766665 3455666666666666667777766666666
Q ss_pred cCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 047932 349 PKGIRPTVVTY---STLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD 425 (598)
Q Consensus 349 ~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 425 (598)
... |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++++... +.+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 543 222111 111222233456666666666666542 4455566666666666666666666666655543 335
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHh
Q 047932 426 IISYSCLIDGLCKIGKLET-AWELFQSLSR 454 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 454 (598)
..++..++..+...|+.++ +.++++++.+
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5556666666666666544 4455566555
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-17 Score=154.30 Aligned_cols=351 Identities=12% Similarity=0.130 Sum_probs=170.3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047932 151 CRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHAD 230 (598)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (598)
.+.|+.++|.+.++++.. +.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|
T Consensus 14 ~~~~~ld~A~~fae~~~~------------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 367889999999998822 358999999999999999999999653 47779999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877764 4557788899999999999999888774 3677799999999999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 047932 311 SMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAAD 390 (598)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 390 (598)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhC
Confidence 76 46999999999999999999999998 2789999999999999999999665543 2234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCC------CHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI--GKLETAWELFQSLSRVGLLP------NVV 462 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~ 462 (598)
+.....++..|.+.|.+++|..+++..+... +-....|+.+...|++- ++..+.++.|.. +.+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 4455678999999999999999999998766 56788888888888764 344445554432 222333 356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCC
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAK-----------GVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMC 531 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 531 (598)
.|..+...|.+.++++.|...+-+-... .-..+...|...+.-|. +.....+. -+-....
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~--~ll~~l~----- 354 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLN--DLLMVLS----- 354 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHH--HHHHHHG-----
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHH--HHHHHHH-----
Confidence 7889999999999999987744221110 01335667777777776 33344444 3333321
Q ss_pred CCCChHHHHHHHHHhCCCCCChhhHHHhh
Q 047932 532 FQPKTLICSISIMLQKDMSPGDTMFSTAL 560 (598)
Q Consensus 532 ~~p~~~~~~~~~~~~~~~~~a~~~~~~~l 560 (598)
.+-|....-...+..|++......++.+.
T Consensus 355 ~~ld~~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 355 PRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp GGCCHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred hccCcHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 12333333335666788887777765544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-15 Score=150.95 Aligned_cols=338 Identities=11% Similarity=0.010 Sum_probs=183.0
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHhHHHH-Hhc------
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHY---DTVLSLFKRLNSTGLFPDLYTHSIL-INC------ 119 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l-l~~------ 119 (598)
.+.|++++|.+.|+++.+.+ ++.++..+...+...|++ ++|+.+|++..+. .|+....... +..
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC------------------------------CHHHHHHHHHTC--CCH
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCC
Confidence 46788999999999987653 445666777777778888 8899999888865 4443332222 222
Q ss_pred -cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH---HHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC
Q 047932 120 -RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVA---LNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG 195 (598)
Q Consensus 120 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 195 (598)
+.++|...|++....| +...+..|...|...+..+.+ .+.+......+ +...+..+...|...+
T Consensus 88 ~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---------~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---------YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---------CTTHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCC
Confidence 5677888888877754 233667777777766554433 33333333322 3556666777777776
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC----CCHH
Q 047932 196 FVDKAMELFLQMKDENINPNVVTYNSLIHCFSHAD---DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN----GKME 268 (598)
Q Consensus 196 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 268 (598)
.++++.+....+...-...+...+..|...|...| +.++|++.|++..+.| .++...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 54444433222222111123336677777777777 7777777777777765 33444445566665443 5777
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----CHHHH
Q 047932 269 EASRLLDLMIQIGVHPNTFVYNTLMDG-F--CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTK-----NVEEA 340 (598)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A 340 (598)
+|..+|+... .| +...+..+..+ + ...+++++|...|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777766 32 45555555555 3 34667777777777777665 5556666666665 34 67777
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH----cCCHHHHHH
Q 047932 341 LNLYRKMLPKGIRPTVVTYSTLFLGLFE----VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK----NGFVLEALE 412 (598)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 412 (598)
+..|++.. . -+...+..+...|.. ..++++|..+|.+..+.|. ......+...|.. ..+..+|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 77777666 2 244555555555544 2366666666666665542 2233344444432 235666666
Q ss_pred HHHHHhhCC
Q 047932 413 LFCAIGNSK 421 (598)
Q Consensus 413 ~~~~~~~~~ 421 (598)
+|+...+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 666665554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-15 Score=147.60 Aligned_cols=352 Identities=11% Similarity=0.003 Sum_probs=212.0
Q ss_pred hhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCC
Q 047932 141 FTYNTLINGLCRTGHT---IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG-----FVDKAMELFLQMKDENI 212 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~ 212 (598)
.++..|...|...|+. ++|...|++.... ++..+..+...+...+ ++++|+..|++..+.|.
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~ 105 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE 105 (452)
T ss_dssp TGGGTCC--------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 3444555666666766 7777777777642 4555666666455544 67788888888777543
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHH
Q 047932 213 NPNVVTYNSLIHCFSHADDW---NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVY 289 (598)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (598)
. ..+..|...|...+.. ..+.+.+......| +......+...|...+.++++......+.+.-...+...+
T Consensus 106 ~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~ 179 (452)
T 3e4b_A 106 G---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICY 179 (452)
T ss_dssp S---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHH
T ss_pred H---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHH
Confidence 2 3566666666655433 33444555544443 3445666777777777554444433222222112234477
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 290 NTLMDGFCLTG---RVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT----KNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 290 ~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
..+..+|...| +.++|+..|+...+.| +++...+..+...|... +++++|+..|++.. . -+...+..+
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~L 254 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHH
Confidence 77888888888 8888888888888876 44555556666666554 68889999988887 3 245556666
Q ss_pred HHH-H--HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 363 FLG-L--FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG-----FVLEALELFCAIGNSKYELDIISYSCLID 434 (598)
Q Consensus 363 ~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 434 (598)
... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|..+|++.. .+ +...+..|..
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~ 326 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQ 326 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHH
Confidence 665 3 45788999999999888766 5667777777776 55 8999999998887 43 6677777777
Q ss_pred HHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047932 435 GLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF 506 (598)
Q Consensus 435 ~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 506 (598)
.|.. ..++++|...|++..+.|. ......|...|.. ..+..+|...|+...+.| .++.......+...
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~ 402 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAP 402 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHh
Confidence 7766 3489999999999888653 3445566766664 458899999999988877 33333333333333
Q ss_pred HhcCCccccchhHHHHHHHhc
Q 047932 507 IRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~ 527 (598)
...++..+|.+ +.++..+.
T Consensus 403 ~~~~~~~~a~~--~~~~~~~~ 421 (452)
T 3e4b_A 403 LTPAQRAEGQR--LVQQELAA 421 (452)
T ss_dssp CCHHHHHHHHH--HHHHHHHH
T ss_pred CCHHHHHHHHH--HHHHHHHh
Confidence 33445566666 66666544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-15 Score=132.57 Aligned_cols=199 Identities=10% Similarity=-0.000 Sum_probs=129.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 047932 319 HDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFI 398 (598)
Q Consensus 319 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 398 (598)
++...+..+...+...|++++|+..|++.....+. +...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 44555566666666666666666666666655332 45556666666666666666666666666543 34455666666
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047932 399 DGLCKN-----------GFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIM 467 (598)
Q Consensus 399 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 467 (598)
.++... |++++|+..|+++.+.. +.+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 88888888888887654 3367778888888888888888888888887765 567778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 468 IHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
..++...|++++|+..|+++++.. |.+...+..+..++...|++++|.+ .+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~--~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAAR--AAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH--HHHHHh
Confidence 888888888888888888888764 5567777888888888888888888 777654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-14 Score=133.83 Aligned_cols=223 Identities=14% Similarity=0.056 Sum_probs=133.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----hhhHHHH
Q 047932 254 FSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCM--HD----VVSYTTL 327 (598)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 327 (598)
+..+...+...|++++|...++++++.. .+...+..+..++...|++++|...++.+.+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444444444444444444443 34444444444445555555555554444432100 01 3455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
...+...|++++|...++++.... |+. ..+...|++++|...++.+.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 556666666666666666655532 222 23445566677777777766653 33456667777777777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777654 3466777777788888888888888888777653 234667777777888888888888888777
Q ss_pred HHC
Q 047932 488 EAK 490 (598)
Q Consensus 488 ~~~ 490 (598)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-15 Score=131.38 Aligned_cols=200 Identities=15% Similarity=0.046 Sum_probs=141.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 047932 137 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV 216 (598)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 216 (598)
+++...+..+...+.+.|++++|+..|++..+.+ |.+...+..+...+.+.|++++|+..|++..+... .+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcH
Confidence 3466677888888888888888888888888875 56778888888888888888888888888887643 366
Q ss_pred HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC
Q 047932 217 VTYNSLIHCFSHA-----------DDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN 285 (598)
Q Consensus 217 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 285 (598)
..+..+..++... |++++|+..|++.++.. +.+...+..+..++...|++++|+..++++++.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 7788888888888 88888888888877753 3355677777778888888888888888887776 56
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 286 TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 286 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
...+..+..++...|++++|...|+...+.. |.+...+..+...+...|++++|+..+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777888888888888888777653 4466667777777777777777777776654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-15 Score=136.11 Aligned_cols=247 Identities=12% Similarity=0.089 Sum_probs=160.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cCHHHHHHHHHHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVA--ADTYIYNTFIDGL 401 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 401 (598)
+......+...|++++|+..++++.+..+. +...+..+..++...|++++|...++++.+.... .....+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455555666666666666665554322 3335555555666666666666666666552211 1233466677777
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047932 402 CKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAH 481 (598)
Q Consensus 402 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 481 (598)
...|++++|+..|+++.+.. +.+..++..+..+|...|++++|+..+++..+.. +.+...+..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776653 3356677788888888888888888888877652 234566666663444456888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---ccccchhHHHHHHHhcccCCCCCCh------HHHHH---HHHHhCCC
Q 047932 482 DLFLDMEAKGVEPDCVIFNTIMLGFIRNNE---TSKSSRGKLMSQMSSCWSMCFQPKT------LICSI---SIMLQKDM 549 (598)
Q Consensus 482 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~p~~------~~~~~---~~~~~~~~ 549 (598)
+.|+++++.. +.+...+..+..++...|+ +++|.. .++++.+.. .-.|+. ..+.. .+...|+.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~a~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKP--YYEKLIEVC--APGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHH--HHHHHHHHH--GGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHH--HHHHHHHHH--hcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 8888888764 4457777778888888887 788888 888887651 122332 11211 45567899
Q ss_pred CCChhhHHHhhhcCccccchhhHhhhhCC
Q 047932 550 SPGDTMFSTALLMDPDCSCDLESLIHNTD 578 (598)
Q Consensus 550 ~~a~~~~~~~l~~~P~~~~~~~~l~~~~~ 578 (598)
++|...++++++++|+|+.+...+-....
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 99999999999999999988877754433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-14 Score=131.69 Aligned_cols=229 Identities=12% Similarity=0.057 Sum_probs=123.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHH
Q 047932 181 TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH--PNVVTFSVIV 258 (598)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 258 (598)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|.+.+++..+.... ++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3445555555555555555555555555543 34555555555555555555555555555442110 0100
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 047932 259 DELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVE 338 (598)
Q Consensus 259 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 338 (598)
....++..+..++...|++++|...++++.... |+ ...+...|+++
T Consensus 77 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~ 122 (258)
T 3uq3_A 77 -------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAE 122 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHH
Confidence 002344444444444444444444444444431 12 12234445555
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047932 339 EALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIG 418 (598)
Q Consensus 339 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 418 (598)
+|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.
T Consensus 123 ~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 123 KELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555554321 133455555566666666666666666665543 3355666666667777777777777777666
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 419 NSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
+.. +.+..++..+..++...|++++|...+++..+
T Consensus 201 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 201 EKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 543 33566677777777777777777777777665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=161.41 Aligned_cols=151 Identities=12% Similarity=0.150 Sum_probs=125.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKD---ENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSV 256 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (598)
-..+|++||++||+.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCH-HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHHH
Q 047932 257 IVDELCKNGKM-EEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHD------VVSYTTLIN 329 (598)
Q Consensus 257 l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 329 (598)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..++.|+ ..+...|..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 78999999999999999999999988655442 334444444 2233332 445556667
Q ss_pred HHHhcC
Q 047932 330 GYCKTK 335 (598)
Q Consensus 330 ~~~~~~ 335 (598)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 776655
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-12 Score=132.33 Aligned_cols=431 Identities=11% Similarity=0.066 Sum_probs=260.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHH
Q 047932 54 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRV 133 (598)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~ 133 (598)
..++.+..|+..+..+|. +...|..++..+.+.+.++.++.+|++++.. .
T Consensus 47 ~~~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--f-------------------------- 96 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--F-------------------------- 96 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--------------------------
T ss_pred CCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--C--------------------------
Confidence 345677788999999987 9999999999999999999999999998865 2
Q ss_pred cCCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH--------HHHHH
Q 047932 134 FGCEPDVFTYNTLINGLCRTGH---TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV--------DKAME 202 (598)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~ 202 (598)
+.....|...+..-.+.|. ++.+..+|++.+.... .+|++..|...+....+.++. +...+
T Consensus 97 ---P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~ 168 (679)
T 4e6h_A 97 ---PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL-----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQ 168 (679)
T ss_dssp ---TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence 2345556666666667777 8888899998887531 137788888777766655543 33447
Q ss_pred HHHHHhh-CCC-CC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------
Q 047932 203 LFLQMKD-ENI-NP-NVVTYNSLIHCFS---------HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK------- 263 (598)
Q Consensus 203 ~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 263 (598)
+|+.... .|. .+ +...|...+.... ..++++.+..+|++++......-..+|......-..
T Consensus 169 ~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~ 248 (679)
T 4e6h_A 169 AFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTAR 248 (679)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHH
T ss_pred HHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHH
Confidence 7777654 355 44 3456666665433 234567788888888753111112233222111101
Q ss_pred ------CCCHHHHHHHHHHHHhc--CC----C-----------c-----C---HHHHHHHHHHHHhcC-------CHHHH
Q 047932 264 ------NGKMEEASRLLDLMIQI--GV----H-----------P-----N---TFVYNTLMDGFCLTG-------RVNHA 305 (598)
Q Consensus 264 ------~g~~~~a~~~~~~~~~~--~~----~-----------~-----~---~~~~~~ll~~~~~~g-------~~~~a 305 (598)
..+++.|...+.++... ++ + | + ...|...+..--..+ ..+.+
T Consensus 249 ~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv 328 (679)
T 4e6h_A 249 RHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARM 328 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHH
Confidence 11223334444333211 11 0 0 0 123444443322221 12344
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEAL-NLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (598)
..+|++++.. ++.....|...+..+...|+.++|. ++|++.... ++.+...+...+......|+++.|..+|+.+..
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5667776654 2446677777777777777777775 777777654 233555566666667777788888888877765
Q ss_pred CC----------CCc-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CCH
Q 047932 385 ND----------VAA-----------DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI-GKL 442 (598)
Q Consensus 385 ~~----------~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 442 (598)
.. .+. ...+|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 31 111 12356666666667777777888887776541122333444333333333 347
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCccccchhHH
Q 047932 443 ETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP--DCVIFNTIMLGFIRNNETSKSSRGKL 520 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~ 520 (598)
+.|..+|+..++. .+-+...|..++......|+.+.|..+|++++....++ ....|...+..-.+.|+.+.+.+ +
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~--v 563 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT--L 563 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH--H
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH--H
Confidence 7788887777664 33355566677776667777788888887777653211 23566666666667777777777 7
Q ss_pred HHHHHhc
Q 047932 521 MSQMSSC 527 (598)
Q Consensus 521 ~~~~~~~ 527 (598)
.+++.+.
T Consensus 564 ~~R~~~~ 570 (679)
T 4e6h_A 564 EKRFFEK 570 (679)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-15 Score=136.60 Aligned_cols=254 Identities=11% Similarity=-0.039 Sum_probs=185.6
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHH
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPS--PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIM 122 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 122 (598)
.+..+...|++++|+..|+.++...+. +.++.+|..++..+...|++++|...|+++++..
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------- 73 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----------------- 73 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----------------
Confidence 345667789999999999999987432 1367789999999999999999999999888642
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAME 202 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 202 (598)
+.+..++..++..|...|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+
T Consensus 74 --------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~ 132 (275)
T 1xnf_A 74 --------------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQD 132 (275)
T ss_dssp --------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------ccccHHHHHHHHHHHHhccHHHHHH
Confidence 2356788889999999999999999999999875 4568889999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 203 LFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
.|+++.+. .|+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...++.+.....
T Consensus 133 ~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 133 DLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 99999875 3444444445555677789999999998877653 3343343 466677788888888888888765421
Q ss_pred C---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047932 283 H---PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLY 344 (598)
Q Consensus 283 ~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 344 (598)
. .+..++..+..++...|++++|...|+++.... |+ .+.....++...|++++|++.+
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~--~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH--NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT--TCHHHHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch--hHHHHHHHHHHHHHHHhhHHHH
Confidence 1 014566777777777788888888887777653 21 1223344555666666666554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=162.77 Aligned_cols=151 Identities=14% Similarity=0.216 Sum_probs=123.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHh---cCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMAN---GNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 215 (598)
-..+|++||.+||+.|++++|.++|++|.+ .+ +.||..|||+||.+||+.|++++|.++|++|.+.|+.||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG------~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR------KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH------TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC------CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 356899999999999999999999988764 34 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC------HHH
Q 047932 216 VVTYNSLIHCFSHADD-WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN------TFV 288 (598)
Q Consensus 216 ~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~ 288 (598)
..||++||.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. ..++.++++ .-++.|+ ..+
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t 274 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNT 274 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccc
Confidence 9999999999999998 588999999999999999999999888655443 333333333 2233333 334
Q ss_pred HHHHHHHHHhcC
Q 047932 289 YNTLMDGFCLTG 300 (598)
Q Consensus 289 ~~~ll~~~~~~g 300 (598)
...|.+.|.+.+
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 445556666544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-13 Score=127.07 Aligned_cols=222 Identities=10% Similarity=-0.055 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHccCCCCCCHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCK----TKNVEEALNLYRKMLPKGIRPTVVTYS 360 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 360 (598)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555566666666666666666665532 44555555566666 666666666666655543 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 361 TLFLGLFE----VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK----NGFVLEALELFCAIGNSKYELDIISYSCL 432 (598)
Q Consensus 361 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 432 (598)
.+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 566666666666555543 44555555555555 556666666665555543 34445555
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 433 IDGLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 433 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
...|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 555555555555555532 33445555555555 555555555555555543 2444455555
Q ss_pred HHHh----cCCccccchhHHHHHHHh
Q 047932 505 GFIR----NNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 505 ~~~~----~g~~~~A~~~~~~~~~~~ 526 (598)
+|.. .+++++|.+ ++++..+
T Consensus 227 ~~~~g~~~~~~~~~A~~--~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIE--NFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHH--HHHHHHH
T ss_pred HHHcCCCcccCHHHHHH--HHHHHHH
Confidence 5555 555555555 5555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.7e-13 Score=122.84 Aligned_cols=189 Identities=10% Similarity=-0.026 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 047932 321 VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE----VHQVEHALKLFDEMQHNDVAADTYIYNT 396 (598)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 396 (598)
...+..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 334444444444445555555555444442 123344444444444 445555555555444432 3344444
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047932 397 FIDGLCK----NGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMI 468 (598)
Q Consensus 397 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 468 (598)
+...+.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 4444444 455555555555444432 34444444444444 445555555555444432 233344444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCccccchhHHHHHHHh
Q 047932 469 HGLCN----DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR----NNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 469 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 526 (598)
..|.. .+++++|+..|++..+.+ +...+..+..+|.. .+++++|.. ++++..+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~--~~~~a~~ 214 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALA--RYSKACE 214 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHH--HHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHH--HHHHHHh
Confidence 44444 445555555555444432 33444444444444 445555555 5544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-14 Score=130.59 Aligned_cols=164 Identities=9% Similarity=0.034 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC--HHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN--TFVYNTLMDG 295 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~ 295 (598)
.+......+...|++++|+..|+++++.. +.+...+..+..++...|++++|+..++.+.+.+..++ ...+..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445555666666666666666666542 22334555566666666666666666666655321111 2235555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
+...|++++|...|+...+.. +.+...+..+...|...|++++|+..+++...... .+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666555542 22444555555555555555555555555554421 1333444443122222344444
Q ss_pred HHHHHHHhh
Q 047932 376 LKLFDEMQH 384 (598)
Q Consensus 376 ~~~~~~~~~ 384 (598)
...|+++.+
T Consensus 162 ~~~~~~a~~ 170 (272)
T 3u4t_A 162 DSSFVKVLE 170 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-14 Score=136.34 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=71.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+..+|..+..++...|++++|+..|+++++.+ +.+...|..+..++.+.|++++|+..|+++++.... +...
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a 236 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSV 236 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHH
Confidence 34445555555555555555555555555543 334555555555555555555555555555544322 4445
Q ss_pred HHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCcCHHHHH
Q 047932 219 YNSLIHCFSH-ADDWNEA-----KRLFIKMMDQGVHPNVVTFSVIVDELCKNG--KMEEASRLLDLMIQIGVHPNTFVYN 290 (598)
Q Consensus 219 ~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (598)
|+.+..++.. .|..++| +..|++.+... +-+...|..+..++...| ++++|++.+..+ +. .+.+...+.
T Consensus 237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~ 313 (382)
T 2h6f_A 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIA 313 (382)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHH
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHH
Confidence 5555555555 3332444 24444444432 223344444444444444 345555555444 21 122334444
Q ss_pred HHHHHHHhc
Q 047932 291 TLMDGFCLT 299 (598)
Q Consensus 291 ~ll~~~~~~ 299 (598)
.+..+|.+.
T Consensus 314 ~La~~~~~~ 322 (382)
T 2h6f_A 314 FLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=133.10 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=201.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF-VDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
..+|..+..++.+.|++++|+..|++++..+ +.+...|+.+..++...|+ +++|+..|+++...... +...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHH
Confidence 4567888889999999999999999999976 5678899999999999997 99999999999987544 7889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
|..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++... .+...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999874 44778899999999999999999999999998753 377889999988888
Q ss_pred -cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcC
Q 047932 299 -TGRVNHA-----KELFVSMESNGCMHDVVSYTTLINGYCKTK--NVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVH 370 (598)
Q Consensus 299 -~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (598)
.|..++| +..+++.+... +.+...|..+...+...| ++++|++.+.++ +.. ..+...+..++..+.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHh
Confidence 5665777 47788887764 457778888888888877 688999988887 432 336677788888887763
Q ss_pred ---------CHHHHHHHHHHH-hhCCCCcCHHHHHHHHHHHH
Q 047932 371 ---------QVEHALKLFDEM-QHNDVAADTYIYNTFIDGLC 402 (598)
Q Consensus 371 ---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 402 (598)
..++|..+++++ .+.+ +.....|..+...+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258888888888 5543 344556665555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-12 Score=129.08 Aligned_cols=437 Identities=11% Similarity=0.021 Sum_probs=299.3
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC---HHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF---VDKAM 201 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 201 (598)
+..|++.+..+ +-|...|..++..+.+.+.++.+..+|+++.... |.....|...+..-.+.|+ ++.+.
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-------P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-------PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 33445444444 4588999999999999999999999999999874 6778899999999899999 99999
Q ss_pred HHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHH-------
Q 047932 202 ELFLQMKDEN-INPNVVTYNSLIHCFSHADDW--------NEAKRLFIKMMD-QGV-HPN-VVTFSVIVDELC------- 262 (598)
Q Consensus 202 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~------- 262 (598)
.+|++..... .+|++..|..-+....+.++. +...++|+..+. .|. .++ ...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999999863 147888888777665554443 345578877665 355 443 457777766443
Q ss_pred --hCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC--C----CCCC-
Q 047932 263 --KNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL-------------TGRVNHAKELFVSMESN--G----CMHD- 320 (598)
Q Consensus 263 --~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~--~----~~~~- 320 (598)
..++++.+.++|+.++......-..+|......-.. ..+++.|...+.++... + .+..
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 234577889999999864322222333322211111 12334455555543221 1 1110
Q ss_pred ------------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 321 ------------------VVSYTTLINGYCKTK-------NVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 321 ------------------~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
...|...+..--..+ ..+.+..+|+++.... +-....|...+..+...|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHH
Confidence 133444444333322 1244567788887653 33778888888888888999999
Q ss_pred H-HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC---------CC------------CHHHHHHHH
Q 047932 376 L-KLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY---------EL------------DIISYSCLI 433 (598)
Q Consensus 376 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~------------~~~~~~~l~ 433 (598)
. .+|++.... ++.+...+...+....+.|++++|..+|+++++... .| ...+|..++
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 999999875 466777788888889999999999999999875310 13 234688888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047932 434 DGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCND-GQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNET 512 (598)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 512 (598)
....+.|..+.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+..++. .+.+...|...+......|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 88889999999999999998751112334444333333344 4589999999999986 466778888888888899999
Q ss_pred cccchhHHHHHHHhcccCCCCC-Ch-HHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCC
Q 047932 513 SKSSRGKLMSQMSSCWSMCFQP-KT-LICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTD 578 (598)
Q Consensus 513 ~~A~~~~~~~~~~~~~~~~~~p-~~-~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~ 578 (598)
+.|.. +|++++.. ...+ +. ..|.. .-...|+.+.+..+.+++.+..|+++. +..++.++.
T Consensus 521 ~~AR~--lferal~~---~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~-~~~f~~ry~ 585 (679)
T 4e6h_A 521 SQVKS--LFESSIDK---ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK-LEEFTNKYK 585 (679)
T ss_dssp HHHHH--HHHHHTTT---SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH-HHHHHHHTC
T ss_pred HHHHH--HHHHHHHh---cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH-HHHHHHHhc
Confidence 99999 99999966 2111 22 23333 345689999999999999999998754 334444444
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-13 Score=126.59 Aligned_cols=252 Identities=9% Similarity=-0.007 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHccC-CCCCCHHHHHHHHHHHH
Q 047932 303 NHAKELFVSMESNGCMHDVVSYTTLINGYC-------KTKNV-------EEALNLYRKMLPK-GIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 367 (598)
++|..+|+++.... +.++..|..++..+. ..|++ ++|..+|++.... .+ -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 56777777777653 446677777776665 34775 8899999988873 32 25667888888888
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDVAADTY-IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC-KIGKLETA 445 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 445 (598)
..|++++|..+|+++++.. +.+.. .|..++..+.+.|++++|..+|+++.+.. +.+...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999988753 22343 78888888899999999999999998764 345555654444433 36999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCccccchhHHHH
Q 047932 446 WELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG-VEP--DCVIFNTIMLGFIRNNETSKSSRGKLMS 522 (598)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (598)
..+|++..+.. +.+...|..++..+.+.|++++|+.+|++++... ++| ....|..++..+.+.|+.++|.. +++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~--~~~ 265 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK--VEK 265 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH--HHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHH
Confidence 99999998752 3367889999999999999999999999999863 455 46788889999999999999999 999
Q ss_pred HHHhcccCCCCCChHH--HHHHHHHhCCCCCChhhHHHhhhcCccccchhhHhhhh
Q 047932 523 QMSSCWSMCFQPKTLI--CSISIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHN 576 (598)
Q Consensus 523 ~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~ 576 (598)
++.+. .|+... ....+ ....+++.++|+++..++.|.+.
T Consensus 266 ~a~~~-----~p~~~~~~~~~~~----------~~r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 266 RRFTA-----FREEYEGKETALL----------VDRYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HHHHH-----TTTTTSSCHHHHH----------HTTTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHHH-----cccccccchHHHH----------HHHHHhcccCCCCHHHHHhcCCC
Confidence 99876 344221 11111 22227788999999999988664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-13 Score=122.91 Aligned_cols=201 Identities=12% Similarity=0.011 Sum_probs=141.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+...|++++|...|+++.... +.+...+..+...+...|++++|.+.++++..... .+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHH
Confidence 4567777888888888888888888887764 45677777888888888888888888888776532 256677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
..+...+...|++++|.+.++++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 777777888888888888887776622233 34566667777777777777777777777653 2345666667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 299 TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
.|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++...
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777777766543 345556666666677777777777777766654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-13 Score=121.28 Aligned_cols=199 Identities=16% Similarity=0.036 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (598)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++...... +...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHH
Confidence 34444445555555555555555554432 224444555555555555555555555555443221 4445555555555
Q ss_pred hcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDV-AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAW 446 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 446 (598)
..|++++|..+++++...+. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 55666666666655554211 2234455556666666666666666666665443 234556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 447 ELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
..++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666542 234555666666666667777777766666654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.8e-14 Score=125.98 Aligned_cols=203 Identities=16% Similarity=0.166 Sum_probs=145.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVV 217 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 217 (598)
.....|..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 92 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAAT 92 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchH
Confidence 345667788888889999999999999988865 5568888888888999999999999998888753 23677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (598)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 88888888888999999999998888763 3466777888888888888888888888887764 336677778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCC
Q 047932 298 LTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKG 351 (598)
Q Consensus 298 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 351 (598)
..|++++|...++.+.+.. +.+...+..+...|...|++++|...++++....
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 8888888888888877664 3456777778888888888888888888877653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-14 Score=126.15 Aligned_cols=209 Identities=14% Similarity=0.073 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (598)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..++++..... .+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHH
Confidence 34444455555555555555555555432 33455555555555566666666666665554422 24555555566666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWE 447 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 447 (598)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665543 3345556666666666667777776666666543 3356666666777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047932 448 LFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTI 502 (598)
Q Consensus 448 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 502 (598)
.++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 777766542 2245566667777777777777777777776643 3344444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-14 Score=128.87 Aligned_cols=130 Identities=12% Similarity=-0.050 Sum_probs=65.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
..++..++..+...|++++|...|+++...+ +.+..+|..+...+...|++++|.+.|+++..... .+..++
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~ 114 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAH 114 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHH
Confidence 3445555555666666666666666655543 33455555555555555666666655555555321 234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...++....
T Consensus 115 ~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 115 LNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 55555555555555555555555543 22222222222333344455555555544443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-12 Score=117.26 Aligned_cols=201 Identities=10% Similarity=-0.047 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGL 366 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (598)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++..... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 344444445555555555555555544432 22344455555555555555555555555544322 1444555555555
Q ss_pred Hhc-CCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047932 367 FEV-HQVEHALKLFDEMQHNDV-AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLET 444 (598)
Q Consensus 367 ~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 444 (598)
... |++++|...++++.+.+. +.+...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 666666666655555211 2224555556666666666666666666665543 2345666666666666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 445 AWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777766665422134555555556666667777777776666543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-13 Score=118.45 Aligned_cols=203 Identities=13% Similarity=0.003 Sum_probs=131.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 78 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHH
Confidence 44566677777777777777777777777654 4456677777777777777777777777776643 225666
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q 047932 219 YNSLIHCFSHA-DDWNEAKRLFIKMMDQGVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGF 296 (598)
Q Consensus 219 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (598)
+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 77777777777 777777777777766222222 4456666667777777777777777766653 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 297 CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
...|++++|...++.+.+.....+...+..+...+...|+.+++..+++.+...
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 667777777777666665431134555555556666666666666666665543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.2e-14 Score=136.91 Aligned_cols=307 Identities=13% Similarity=0.069 Sum_probs=181.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 047932 179 PDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN----VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ----GVHP- 249 (598)
Q Consensus 179 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 249 (598)
.....+......+...|++++|...|+++...+.. + ...+..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34445556666667777777777777766664221 2 235556666666667777776666665432 1111
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047932 250 NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVH-PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLI 328 (598)
Q Consensus 250 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (598)
...++..+...+...|++++|...++++.+.... .+. .....++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHH
Confidence 1234455555566666666666666655543100 010 00122334444
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHccC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 329 NGYCKTKN--------------------VEEALNLYRKMLPK----GIRP-TVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 329 ~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
..|...|+ +++|...+.+.... +..+ ...++..+...+...|++++|...++++.
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444 55555555443321 1011 12455666667777777777777777665
Q ss_pred hC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 384 HN----DV-AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE-LD----IISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 384 ~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
+. +. .....++..+...+...|++++|...++++...... .+ ..++..+...|...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 42 10 111336777788888888888888888877632100 11 4577888889999999999999998876
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCccccch
Q 047932 454 RVGL-LPN----VVTYNIMIHGLCNDGQMDKAHDLFLDMEAK----GVE-PDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 454 ~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+... ..+ ..++..+...|...|++++|...+++..+. +-. ....++..+..++...|+...+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 5211 111 456778888999999999999999988753 211 124567778888888887755444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=135.71 Aligned_cols=303 Identities=13% Similarity=0.069 Sum_probs=181.7
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhhC--
Q 047932 137 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD----TVTYNTIIDGVCKEGFVDKAMELFLQMKDE-- 210 (598)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 210 (598)
......+......+...|++++|...|+++.... +.+ ...+..+...+...|++++|...++++...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3456677888999999999999999999999865 333 357888999999999999999999987543
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhCCC----------------
Q 047932 211 --NINP-NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH-PN----VVTFSVIVDELCKNGK---------------- 266 (598)
Q Consensus 211 --~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~---------------- 266 (598)
+..| ...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 1111 2457888899999999999999999988753110 11 3367777788888888
Q ss_pred ----HHHHHHHHHHHHhc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC----ChhhHHHHHHHHH
Q 047932 267 ----MEEASRLLDLMIQI----GVH-PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC-MH----DVVSYTTLINGYC 332 (598)
Q Consensus 267 ----~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~ 332 (598)
+++|...+++.... +.. ....++..+...+...|++++|...+++..+... .+ ...++..+...|.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 77777777766542 101 1123455555666666666666666665543210 00 1123444444555
Q ss_pred hcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHHcCCHHHHH
Q 047932 333 KTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA-DTYIYNTFIDGLCKNGFVLEAL 411 (598)
Q Consensus 333 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 411 (598)
..|++++|...+++...... ..+..+ ...++..+...+...|++++|.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHH-------------------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 55555555555544432100 000000 1334455555556666666666
Q ss_pred HHHHHHhhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 047932 412 ELFCAIGNSKY-----ELDIISYSCLIDGLCKIGKLETAWELFQSLSRV----GLLP-NVVTYNIMIHGLCNDGQM 477 (598)
Q Consensus 412 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 477 (598)
..++++..... .....++..+..+|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 66555442110 001345566666666777777777766665441 1111 133455566666665554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=134.51 Aligned_cols=276 Identities=13% Similarity=0.065 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT----VTYNTIIDGVCKEGFVDKAMELFLQMKDE----N- 211 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~- 211 (598)
..+..+...+...|++++|+..|+++.+.. +.+. ..+..+...|...|++++|...++++... +
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 345567788889999999999999998865 3333 46788888999999999999998887653 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHhCCC-----------------HHH
Q 047932 212 INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG-----VHPNVVTFSVIVDELCKNGK-----------------MEE 269 (598)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~ 269 (598)
.+....++..+...|...|++++|...+++..+.. ......++..+...|...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 11234567778888888888888888888776531 01123356666777777777 666
Q ss_pred HHHHHHHHHhc----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHH
Q 047932 270 ASRLLDLMIQI----GV-HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCM-HD----VVSYTTLINGYCKTKNVEE 339 (598)
Q Consensus 270 a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~ 339 (598)
|...+++..+. +. .....++..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 66666665432 10 111224455555555666666666655554432100 00 1134444444444555555
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047932 340 ALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDV-AADTYIYNTFIDGLCKNGFVLEALELFCAIG 418 (598)
Q Consensus 340 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 418 (598)
|...+++...... ..+. .....++..+...+...|++++|...++++.
T Consensus 282 A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 282 AAEHYKRTLALAV-------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5444444332100 0000 0113344555555566666666666665544
Q ss_pred hCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 419 NSK-----YELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 419 ~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
... ......++..+..+|...|++++|...+++..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 210 011134556666677777777777777777665
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-12 Score=118.74 Aligned_cols=219 Identities=9% Similarity=0.060 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCCCCHHhHHHHHhccH
Q 047932 56 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAK-------NKHY-------DTVLSLFKRLNSTGLFPDLYTHSILINCRI 121 (598)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 121 (598)
++|...|++++...|. ++.+|..++..+.. .|++ ++|+.+|++++..
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~----------------- 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----------------- 93 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-----------------
Confidence 7899999999999887 99999999988864 4665 5666666665541
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHh-HHHHHHHHHHhcCCHHHH
Q 047932 122 MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTV-TYNTIIDGVCKEGFVDKA 200 (598)
Q Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A 200 (598)
.. +.+...|..++..+.+.|++++|..+|+++.+.. +.+.. .|..++..+.+.|++++|
T Consensus 94 ------------~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 94 ------------LL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp ------------TT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred ------------hC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-------ccCccHHHHHHHHHHHHhcCHHHH
Confidence 11 2355678889999999999999999999999854 33344 788899999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 201 MELFLQMKDENINPNVVTYNSLIHCFS-HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
..+|++..+.+. .+...|...+.... ..|++++|..+|++.++.. +.+...|..++..+.+.|++++|..+|++.+.
T Consensus 154 ~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 154 RMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999987632 34555544433322 3688888888888887752 33566777788888888888888888888887
Q ss_pred cC-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 280 IG-VHP--NTFVYNTLMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 280 ~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
.. +.| ....|..++....+.|+.+.|..+++++.+.
T Consensus 232 ~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 52 343 3556777777777788888888888877765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-13 Score=133.82 Aligned_cols=277 Identities=13% Similarity=0.088 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHh
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV----VTYNSLIHCFSHADDWNEAKRLFIKMMDQ----GV-HPNVV 252 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 252 (598)
..+..+...+...|++++|...|+++.+.+.. +. ..+..+...|...|++++|...+++..+. +. +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 33444555666666666666666666654221 22 34555666666666666666666655432 00 11223
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHH
Q 047932 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG-CMHDVVSYTTLINGY 331 (598)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 331 (598)
++..+...|...|++++|...++++.+... ..+ .+....++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHH
Confidence 444455555555555555555555443200 000 011122333444444
Q ss_pred HhcCC-----------------HHHHHHHHHHHccC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--
Q 047932 332 CKTKN-----------------VEEALNLYRKMLPK----GI-RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDV-- 387 (598)
Q Consensus 332 ~~~~~-----------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 387 (598)
...|+ +++|+..+.+.... +. .....++..+...+...|++++|...+++..+...
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 44444 44444444433221 00 01123444555555666666666666655543210
Q ss_pred ---CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 047932 388 ---AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE-----LDIISYSCLIDGLCKIGKLETAWELFQSLSRV---- 455 (598)
Q Consensus 388 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 455 (598)
......+..+...+...|++++|...++++...... ....++..+...|...|++++|...+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 001225556666666677777777666665432100 11345666667777777777777777766542
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 456 GLLP-NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 456 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
+..+ ...++..+..+|...|++++|...+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0000 1235556666667777777777777766653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-13 Score=127.32 Aligned_cols=277 Identities=12% Similarity=0.051 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD----TVTYNTIIDGVCKEGFVDKAMELFLQMKDE----NI 212 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~ 212 (598)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++.... +.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc
Confidence 345566778888999999999999988764 233 356778888888899999998888876542 11
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhCCC--------------------
Q 047932 213 N-PNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV-HPN----VVTFSVIVDELCKNGK-------------------- 266 (598)
Q Consensus 213 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~-------------------- 266 (598)
. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 1 1244667777778888888888888877654310 011 2255666666777777
Q ss_pred HHHHHHHHHHHHhc----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047932 267 MEEASRLLDLMIQI----GV-HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEAL 341 (598)
Q Consensus 267 ~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 341 (598)
+++|...+++.... +. .....++..+...+...|++++|...+++..+...
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------------ 214 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK------------------------ 214 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH------------------------
Confidence 66666666554432 10 00122344444445555555555555544432100
Q ss_pred HHHHHHccCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047932 342 NLYRKMLPKGI-RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN----DVA-ADTYIYNTFIDGLCKNGFVLEALELFC 415 (598)
Q Consensus 342 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 415 (598)
..+. .....++..+...+...|++++|...+++.... +.. ....++..+...+...|++++|...++
T Consensus 215 -------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (338)
T 3ro2_A 215 -------EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 287 (338)
T ss_dssp -------HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 0000 001124444555555555555555555554432 100 013455566666677777777777766
Q ss_pred HHhhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047932 416 AIGNSK-----YELDIISYSCLIDGLCKIGKLETAWELFQSLSRV 455 (598)
Q Consensus 416 ~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (598)
++.... ......++..+...|...|++++|...+++..+.
T Consensus 288 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 288 KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 654321 0111335667777777778888888877777663
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-12 Score=125.72 Aligned_cols=293 Identities=11% Similarity=0.021 Sum_probs=145.5
Q ss_pred HHhcCCHHHHHHHHHHHhhC--CCCCCH--HHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCCCHhh
Q 047932 191 VCKEGFVDKAMELFLQMKDE--NINPNV--VTYNSLIHC--FSHADDWNEAK-----------RLFIKMMDQGVHPNVVT 253 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 253 (598)
+.+.+++++|..+++++.+. .+..+. ..|..++.. ....++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45689999999999988664 222233 333444332 12223333333 5555544321 11111
Q ss_pred ------HHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 047932 254 ------FSVIVDELCKNGKMEEASRLLDLMIQI----GVHP-NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC----- 317 (598)
Q Consensus 254 ------~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----- 317 (598)
+......+...|++++|...+++..+. +-.+ ...++..+..+|...|+++.|...+++..+...
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 122455667778888888888777654 1111 234566667777777777777777776654210
Q ss_pred -CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CC
Q 047932 318 -MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR-PT----VVTYSTLFLGLFEVHQVEHALKLFDEMQH-----ND 386 (598)
Q Consensus 318 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~ 386 (598)
+....++..+...|...|++++|...+++....... ++ ..++..+...+...|++++|...+++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112334555666666666666666666655432100 01 12445555555556666666665555544 11
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC
Q 047932 387 VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK----YELDIISYSCLIDGLCKIGK---LETAWELFQSLSRVGLLP 459 (598)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p 459 (598)
.+....++..+...+...|++++|...+++..... -+.....+..+...+...|+ +++|+.++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 12234445555555555555555555555544210 01111123334444444454 44444444333 1111
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 460 N-VVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 460 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
+ ...+..+...|...|++++|...+++..
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 2233444445555555555555555444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-12 Score=109.95 Aligned_cols=163 Identities=11% Similarity=0.042 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 357 VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGL 436 (598)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 436 (598)
..|..+...+...|++++|+..|+++++.. |.+...+..+..++.+.|++++|...+..+.... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 334444444444444444444444444432 2234444444444444444444444444444332 22333444444444
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047932 437 CKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSS 516 (598)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 516 (598)
...++++.|...+.+..... +.+...+..+..++.+.|++++|++.|+++++.. +.+..+|..++.+|.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 44444444444444444421 1133444444444444444444444444444432 333444444444444444444444
Q ss_pred hhHHHHHHH
Q 047932 517 RGKLMSQMS 525 (598)
Q Consensus 517 ~~~~~~~~~ 525 (598)
+ .+++++
T Consensus 162 ~--~~~~al 168 (184)
T 3vtx_A 162 K--YFKKAL 168 (184)
T ss_dssp H--HHHHHH
T ss_pred H--HHHHHH
Confidence 4 444444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=125.42 Aligned_cols=132 Identities=12% Similarity=-0.025 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CC----HH
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQHND-----VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE-LD----II 427 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~ 427 (598)
.+..+...+...|++++|...++++.+.. ......++..+...+...|++++|...+++....... .+ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 44455555556666666666665554320 0001224455555556666666666666554421100 01 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRVG----LLP-NVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
++..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|...++++.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555555544310 000 022344455555555555555555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.5e-12 Score=107.34 Aligned_cols=167 Identities=11% Similarity=0.051 Sum_probs=122.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+..+|..++..|.+.|++++|++.|++..+.+ |.+..++..+...|.+.|++++|...+........ .+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHH
Confidence 55677788888888888888888888887765 45677777888888888888888888877776532 25666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
+..+...+...++++.+...+.+..... +.+...+..+..++.+.|++++|++.+++.++.. +.+..++..+..+|.+
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHH
Confidence 7777777777788888888887777653 3356667777777777788888887777777764 3356677777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047932 299 TGRVNHAKELFVSMESN 315 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~ 315 (598)
.|++++|.+.|++..+.
T Consensus 154 ~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 77777777777777665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-12 Score=124.19 Aligned_cols=234 Identities=10% Similarity=-0.009 Sum_probs=129.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CC----CCHH
Q 047932 145 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP-DTVTYNTIIDGVCKEGFVDKAMELFLQMKDEN--IN----PNVV 217 (598)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~ 217 (598)
..+..+...|++++|...|++..+.....+ .++ ...++..+...|...|++++|...+++..+.. .. ....
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVK--DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 356677788888888888888776421000 011 24567777888888888888888887766431 10 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhCCCHHHHHHHHHHHHhc----CC-CcCHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVH-PN----VVTFSVIVDELCKNGKMEEASRLLDLMIQI----GV-HPNTF 287 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 287 (598)
+++.+..+|...|++++|.+.+++.++.... ++ ..++..+..+|...|++++|...+++..+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 5666777777777777777777776543100 11 125566666777777777777777666652 22 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHccCCCCCCHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESN----GCMHDVVSYTTLINGYCKTKN---VEEALNLYRKMLPKGIRPTVVTYS 360 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~ 360 (598)
++..+..++...|++++|...+++.... +.+.....+..+...|...|+ +++|+.++++.... ......+.
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~ 343 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHH
Confidence 5666666666666666666666665432 111111223444445555555 44444444443110 11122333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 047932 361 TLFLGLFEVHQVEHALKLFDEM 382 (598)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~ 382 (598)
.+...|...|++++|...+++.
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444455555555544444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-12 Score=128.28 Aligned_cols=214 Identities=9% Similarity=-0.040 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHH
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHY-DTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRV 133 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~ 133 (598)
+++|+..++......|. +...|..++..+...|++ ++|+..|+++++..
T Consensus 84 ~~~al~~l~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---------------------------- 133 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQV--EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---------------------------- 133 (474)
T ss_dssp HHHHHHHHHHHHTTCCC--CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHHhccCch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----------------------------
Confidence 67778888877766664 889999999999999999 99999999888642
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhc---------CCHHHHHHHH
Q 047932 134 FGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKE---------GFVDKAMELF 204 (598)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~ 204 (598)
+.+..+|..+..+|.+.|++++|.+.|+++.+.. |+...+..+...+... |++++|++.|
T Consensus 134 ---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~ 202 (474)
T 4abn_A 134 ---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--------KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202 (474)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--------CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHH
Confidence 2357789999999999999999999999999864 6678999999999999 9999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhCCCHHHHHHHH
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHA--------DDWNEAKRLFIKMMDQGVH--PNVVTFSVIVDELCKNGKMEEASRLL 274 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~ 274 (598)
++..+... .+...|..+..+|... |++++|+..|++..+.... .+...|..+..+|...|++++|...|
T Consensus 203 ~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 203 KLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99988643 3678899999999888 8899999999998886320 36778888888999999999999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 275 DLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVS 311 (598)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 311 (598)
++..+.. +.+...+..+..++...|++++|.+.+..
T Consensus 282 ~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 282 SQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9988864 33566777788888888888888765543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-12 Score=127.91 Aligned_cols=216 Identities=10% Similarity=-0.073 Sum_probs=170.8
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHH
Q 047932 120 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHT-IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVD 198 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 198 (598)
.+++++..+++..... +.+...+..+...|...|++ ++|++.|+++.+.+ +.+...|..+...|...|+++
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-------PELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHH
Confidence 4556666777665542 34677888889999999999 99999999988875 556888999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC-----
Q 047932 199 KAMELFLQMKDENINPNVVTYNSLIHCFSHA---------DDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN----- 264 (598)
Q Consensus 199 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 264 (598)
+|.+.|++..+. .|+...+..+..++... |++++|+..|++.++.. +.+...|..+..+|...
T Consensus 155 ~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 155 SAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence 999999998875 46678888888888888 89999999999888763 34567888888888887
Q ss_pred ---CCHHHHHHHHHHHHhcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047932 265 ---GKMEEASRLLDLMIQIGVH--PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEE 339 (598)
Q Consensus 265 ---g~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (598)
|++++|+..|+++++.... .+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8888898888888876321 367788888888888888888888888887764 4466677778888888888888
Q ss_pred HHHHHHHH
Q 047932 340 ALNLYRKM 347 (598)
Q Consensus 340 A~~~~~~~ 347 (598)
|++.+.++
T Consensus 311 Ai~~~~~~ 318 (474)
T 4abn_A 311 LLESKGKT 318 (474)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccc
Confidence 87765443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.7e-12 Score=112.56 Aligned_cols=206 Identities=8% Similarity=-0.040 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 355 TVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLID 434 (598)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 434 (598)
|+..+......+...|++++|...|+++.+...+++...+..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566667777777778888888888777776433566666667778888888888888888887664 335667788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPNV-------VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP--DCVIFNTIMLG 505 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~ 505 (598)
+|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|+++++.. +. +...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 8888888888888888887742 2234 457777788888999999999999988753 33 35677778888
Q ss_pred HHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH-HHHHhCCCCCChhhHHHhhhcCccccchhhHhh
Q 047932 506 FIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI-SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLI 574 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~ 574 (598)
|...|+ . .++++... + ..+...+.. .....+.+++|...++++++++|+++.+...+.
T Consensus 163 ~~~~~~-----~--~~~~a~~~---~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 163 FYNNGA-----D--VLRKATPL---A-SSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----H--HHHHHGGG---T-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHH-----H--HHHHHHhc---c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 876653 2 45555543 1 222333333 445567788999999999999999998876664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=123.93 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=125.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-------NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ----- 245 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 245 (598)
+.+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445677888899999999999999999988763 22334567788888899999999999999888764
Q ss_pred -CC-CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc------CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 047932 246 -GV-HPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI------GV-HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN- 315 (598)
Q Consensus 246 -~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 315 (598)
+. +....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 223456777888888889999988888888764 11 223445677777888888888888888877653
Q ss_pred -----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHcc
Q 047932 316 -----G-CMHDVVSYTTLINGYCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 316 -----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 349 (598)
+ .+....++..+...|...|++++|...++++..
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122345566777777778888888877777664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=122.45 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc------C
Q 047932 215 NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ-------GVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI------G 281 (598)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~ 281 (598)
+..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++++.. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888889999999999999999988763 22334457778888899999999999999888764 1
Q ss_pred C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC---
Q 047932 282 V-HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN------G-CMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK--- 350 (598)
Q Consensus 282 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 350 (598)
. +....++..+...+...|++++|...++++.+. + .+.....+..+...+...|++++|++.++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223456777788888888888888888877653 1 1223455666777777777777777777776543
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 351 ---GIRP-TVVTYSTLFLGLFEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 351 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (598)
+..| ...++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 234555666666677777777777766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.9e-11 Score=114.96 Aligned_cols=228 Identities=9% Similarity=-0.032 Sum_probs=141.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC----C-CCC-CHHHHHH
Q 047932 293 MDGFCLTGRVNHAKELFVSMESNGC-----MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK----G-IRP-TVVTYST 361 (598)
Q Consensus 293 l~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~-~~~~~~~ 361 (598)
...+...|++++|...|++...... +....++..+...|...|+++.|...+.+.... + ..+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445666777777777776654310 012345566667777777777777777665532 1 011 1345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCCCCCHHHHHH
Q 047932 362 LFLGLFEVHQVEHALKLFDEMQHN----DVA-ADTYIYNTFIDGLCKNGFVLEALELFCAIGN-----SKYELDIISYSC 431 (598)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 431 (598)
+...+...|++++|...|.++.+. +.+ ....++..+..++...|++++|...+++... .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 777777777777777777766542 111 1234566777777888888888888877765 33 223566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 047932 432 LIDGLCKIGKLETAWELFQSLSRVGL---LPN-VVTYNIMIHGLCNDGQ---MDKAHDLFLDMEAKGVEP-DCVIFNTIM 503 (598)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 503 (598)
+..++.+.|++++|...+++..+... .+. ...+..+...+...|+ +.+|+.++++. +..| ....+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 78888888888888888887766311 122 2344555555666677 66666666652 2122 234556777
Q ss_pred HHHHhcCCccccchhHHHHHHHh
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
..|...|++++|.. .++++.+
T Consensus 344 ~~y~~~g~~~~A~~--~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAA--FYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHH--HHHHHHH
T ss_pred HHHHHCCCHHHHHH--HHHHHHH
Confidence 78888888888888 8877764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-10 Score=109.55 Aligned_cols=274 Identities=11% Similarity=0.031 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----hhHH
Q 047932 185 NTIIDGVCKEGFVDKAMELFLQMKDENINPNVV----TYNSLIHCFSHADDWNEAKRLFIKMMDQGV-HPNV----VTFS 255 (598)
Q Consensus 185 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~ 255 (598)
......+...|++++|...+++........+.. +++.+...+...|++++|.+.+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556677777777776666542221211 344455556666666666666666544210 0111 1233
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQI----GVH--P-NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLI 328 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (598)
.+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 168 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------- 168 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---------
Confidence 4445555556666665555555432 110 1 12233334444455555555555555444321100
Q ss_pred HHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cC-HHHHH----HHHHHHH
Q 047932 329 NGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVA-AD-TYIYN----TFIDGLC 402 (598)
Q Consensus 329 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~----~l~~~~~ 402 (598)
+......++..+...+...|++++|...+++....... .. ..... ..+..+.
T Consensus 169 ----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 169 ----------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp ----------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 00001223344444445555555555555544321000 00 11110 1223345
Q ss_pred HcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhc
Q 047932 403 KNGFVLEALELFCAIGNSKYEL---DIISYSCLIDGLCKIGKLETAWELFQSLSRV----GLLPNV-VTYNIMIHGLCND 474 (598)
Q Consensus 403 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~ 474 (598)
..|++++|...+++.......+ ....+..+...+...|++++|...+++.... |..++. ..+..+..++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 5666666666666555432111 1223445556666666666666666655431 111111 2444455566666
Q ss_pred CCHHHHHHHHHHHHH
Q 047932 475 GQMDKAHDLFLDMEA 489 (598)
Q Consensus 475 g~~~~A~~~~~~~~~ 489 (598)
|+.++|...+++...
T Consensus 307 g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 307 GRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777766666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=113.32 Aligned_cols=307 Identities=9% Similarity=-0.010 Sum_probs=211.7
Q ss_pred CCHhHHHHHHHHH--HhcCCHHHHHHHHHHHhhC--CCCCC--HHHHHHHHHHH--HhcCCHH---------HHHHHHHH
Q 047932 179 PDTVTYNTIIDGV--CKEGFVDKAMELFLQMKDE--NINPN--VVTYNSLIHCF--SHADDWN---------EAKRLFIK 241 (598)
Q Consensus 179 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~--~~~~~~~---------~a~~~~~~ 241 (598)
|+..+-+.|-.-| .+.+++++|.++++++... .+..| ...|..++..- ...+.+. ...+.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444445555555 7899999999999987653 22223 33444444321 1112222 22255555
Q ss_pred HHHCCCCCCH----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-Cc----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 242 MMDQGVHPNV----VTFSVIVDELCKNGKMEEASRLLDLMIQIGV-HP----NTFVYNTLMDGFCLTGRVNHAKELFVSM 312 (598)
Q Consensus 242 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 312 (598)
+.....+.+. ..+......+...|++++|+..++++.+... .+ ...++..+..+|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432111111 1233445667899999999999999986521 11 2457788889999999999999999987
Q ss_pred HHC----CC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHccC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 313 ESN----GC-M-HDVVSYTTLINGYCKTKNVEEALNLYRKMLPK----GIR-PTVVTYSTLFLGLFEVHQVEHALKLFDE 381 (598)
Q Consensus 313 ~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 381 (598)
.+. +. . ....+++.+...|...|++++|.+.+.+.... +.. ....++..+..++...|++++|...+.+
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 653 10 1 12456788999999999999999999987653 111 1235677888999999999999999999
Q ss_pred Hhh-----CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 047932 382 MQH-----NDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK----YELDIISYSCLIDGLCKIGK---LETAWELF 449 (598)
Q Consensus 382 ~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 449 (598)
..+ .. +....++..+...+.+.|++++|...+++..... .+.....+..+...+...++ +.+|+..+
T Consensus 248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 887 43 3347788899999999999999999999987532 12223456666777777888 77777777
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 450 QSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 450 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
++. +..|+ ...+..+...|...|++++|...|+++.+
T Consensus 327 ~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 762 22222 34567788999999999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-10 Score=107.49 Aligned_cols=201 Identities=10% Similarity=0.031 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-C
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKDENI-NPNV----VTYNSLIHCFSHADDWNEAKRLFIKMMDQ----GVH--P-N 250 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 250 (598)
+++.+...+...|++++|.+.+++...... ..+. .++..+...+...|++++|...+++.... +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 466777888899999999999998875311 1122 23567888899999999999999988753 221 2 2
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHH
Q 047932 251 VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP----NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHD-VVSYT 325 (598)
Q Consensus 251 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 325 (598)
...+..+...+...|++++|...+++........ ...++..+...+...|++++|...+++.......++ ...+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 3456678889999999999999999988753221 234567777888888999999998888765311111 11121
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHccCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 326 -----TLINGYCKTKNVEEALNLYRKMLPKGIRPT---VVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 326 -----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
..+..+...|++++|...+.+.......+. ...+..+...+...|++++|...++.+.
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223346678888888888877765432111 1233444555555566666666555543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-10 Score=101.92 Aligned_cols=208 Identities=11% Similarity=-0.019 Sum_probs=152.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLF 363 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 363 (598)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++.....+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888888889999999999999999888764367777777888999999999999999998876433 567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADT-------YIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL--DIISYSCLID 434 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 434 (598)
..+...|++++|...+++..+.. +.+. ..+..+...+...|++++|+..|+++++.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 89999999999999999988764 3344 457778888888999999999999988763 22 3567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
+|...| ...++++...+ ..+...|.... ....+.+++|+..+++..+.. |.+..+...+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~ 221 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 775543 44455555542 22344444333 334567889999999998864 44455444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-10 Score=98.56 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+..++..+...|++++|...++++.... +.+...+..+...+...|++++|.+.++.+.+.. +.+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345666777777777777777777776654 4456677777777777777777777777776642 23566667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG 300 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 300 (598)
.+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 77777777777777777777776652 3355566666667777777777777777766653 234556666666666677
Q ss_pred CHHHHHHHHHHHHHC
Q 047932 301 RVNHAKELFVSMESN 315 (598)
Q Consensus 301 ~~~~a~~~~~~~~~~ 315 (598)
++++|...++.+.+.
T Consensus 159 ~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 159 RHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 777777666666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-10 Score=97.60 Aligned_cols=162 Identities=11% Similarity=0.060 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK 403 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (598)
+..+...+...|++++|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 34444445555555555555555544322 134444444555555555555555555544432 2334444444555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 404 NGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDL 483 (598)
Q Consensus 404 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 483 (598)
.|++++|...++++.... +.+...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544332 2244444455555555555555555555544431 12344444455555555555555555
Q ss_pred HHHHHH
Q 047932 484 FLDMEA 489 (598)
Q Consensus 484 ~~~~~~ 489 (598)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.8e-11 Score=121.83 Aligned_cols=166 Identities=11% Similarity=0.075 Sum_probs=147.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+..+|+.|..+|.+.|++++|++.|++.++.+ +.+..+|..+..+|.+.|++++|++.|++..+.... +...
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a 79 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADA 79 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 46789999999999999999999999999876 556889999999999999999999999999886433 6889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
|..+..+|...|++++|++.|++.++.. +-+...+..+..+|...|++++|++.|++.++.. +-+...+..+..++..
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 9999999999999999999999999864 3367789999999999999999999999999875 3367889999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 047932 299 TGRVNHAKELFVSMES 314 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~ 314 (598)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998887754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=121.27 Aligned_cols=163 Identities=19% Similarity=0.088 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 047932 321 VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDG 400 (598)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (598)
...++.+...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|+..|+++++.. +.+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444555555555555555555555554443221 34444444444555555555555554444432 2234444444444
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 047932 401 LCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLP-NVVTYNIMIHGLCNDGQMDK 479 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 479 (598)
+...|++++|+..|+++++.. +-+...|..+..+|...|++++|+..|++.++. .| +...+..++.++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 444444444444444444332 223444444444444444444444444444442 12 23344444444444444444
Q ss_pred HHHHHHHHH
Q 047932 480 AHDLFLDME 488 (598)
Q Consensus 480 A~~~~~~~~ 488 (598)
|.+.+++++
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.5e-11 Score=110.33 Aligned_cols=173 Identities=15% Similarity=0.133 Sum_probs=125.3
Q ss_pred ccCCChHHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHH
Q 047932 50 INLITPNEALCIFDYMLRMH------PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIME 123 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 123 (598)
...|++++|...|+++++.. ..+....++..++..+...|++++|+..|++++..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------- 72 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI------------------- 72 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------------------
Confidence 35678888888888877621 11236778999999999999999999999987742
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ccccCCCHhHHHHHHHHHHhcCCHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCKPDTVTYNTIIDGVCKEGFVDKAME 202 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 202 (598)
.......+.+....++..+...|...|++++|...|+++....... +...+....++..+...|...|++++|..
T Consensus 73 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 73 ----REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp ----HHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ----HHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1222111112245578899999999999999999999988641000 00013346788889999999999999999
Q ss_pred HHHHHhhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 203 LFLQMKDE------NINP-NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 203 ~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
.++++... +-.| ...++..+..+|...|++++|...++++.+.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99988764 1122 3457788888899999999999999888753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-09 Score=98.71 Aligned_cols=190 Identities=7% Similarity=-0.004 Sum_probs=137.9
Q ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 375 ALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY-ELDIISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
++..|++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 44555666788888899999999999998876543 1366778888999999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHH
Q 047932 454 RVGLLP-----NVVTYNIMIHG--LCNDG--QMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQM 524 (598)
Q Consensus 454 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (598)
+. .| +..+...|+.+ ....| ++++|..+|+++.+. .|+..+...++.++.+.|++++|.+ .++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~--~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG--IVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH--HHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH--HHHHH
Confidence 74 55 34555566655 33334 899999999998764 4664444445558999999999999 99987
Q ss_pred HhcccC-----CCCCChHHHH-H---HHHHhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 525 SSCWSM-----CFQPKTLICS-I---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 525 ~~~~~~-----~~~p~~~~~~-~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
.+..+. ...|+..... . +....|+ .|.+.++++.+.+|+++.+.+-.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 653100 0025554443 2 3344565 89999999999999999977654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-09 Score=96.98 Aligned_cols=188 Identities=12% Similarity=0.044 Sum_probs=120.5
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047932 340 ALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDV-AADTYIYNTFIDGLCKNGFVLEALELFCAIG 418 (598)
Q Consensus 340 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 418 (598)
|+..|++....+ .++..++..+...+...|++++|++++.+.+..+. ..+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666777666554 33455555667777777888888888877766542 2356667777777888888888888888776
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 419 NSKYEL-----DIISYSCLIDG--LCKIG--KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 419 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 24444555544 33334 788888888887664 34433333444477788888888888876654
Q ss_pred C-----C----CCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 490 K-----G----VEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 490 ~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
. + -+.|+.+...++.+....|+ +|.+ +++++.+. .|+......
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~--l~~qL~~~-----~P~hp~i~d 291 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTED--LTNQLVKL-----DHEHAFIKH 291 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHH--HHHHHHHT-----TCCCHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHH--HHHHHHHh-----CCCChHHHH
Confidence 2 0 03356666566666666675 7777 88888754 566655444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.19 E-value=4.8e-08 Score=97.46 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=62.6
Q ss_pred CC-ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 52 LI-TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 52 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
.| +++.|+.+|++++...|. |+++.+..+|++.+..
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~-------------------------- 43 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKK-------------------------- 43 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTT--------------------------
T ss_pred cCcchHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhcc--------------------------
Confidence 45 366777777777665543 5677777777776653
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHH----hcCCHHHHHHHHH
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRTGH-TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC----KEGFVDKAMELFL 205 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~ 205 (598)
.|++..|...+....+.++ .+....+|+.++..-+. -+.+...|...+..+. .+++.+.+..+|+
T Consensus 44 ------~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~----d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~ 113 (493)
T 2uy1_A 44 ------SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN----YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYM 113 (493)
T ss_dssp ------CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT----CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC----CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Confidence 2455555555554444442 34566777777654210 1345677777776654 3467888999999
Q ss_pred HHhhC
Q 047932 206 QMKDE 210 (598)
Q Consensus 206 ~~~~~ 210 (598)
+....
T Consensus 114 rAL~~ 118 (493)
T 2uy1_A 114 RALQT 118 (493)
T ss_dssp HHHTS
T ss_pred HHHhC
Confidence 99874
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-10 Score=106.07 Aligned_cols=121 Identities=13% Similarity=-0.015 Sum_probs=58.2
Q ss_pred hCCCHHHHHHHHHHHHhc-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCChhhHHHHH
Q 047932 263 KNGKMEEASRLLDLMIQI-------GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN------G-CMHDVVSYTTLI 328 (598)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~ 328 (598)
..|++++|+..+++.++. ..+....++..+...+...|++++|...++++.+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345555555555554431 11223345555666666666666666666665432 1 112334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHccC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 329 NGYCKTKNVEEALNLYRKMLPK------G-IRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 329 ~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
..|...|++++|...+.++... . .+....++..+...+...|++++|...++++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555566666666555555432 0 01122334444444444455555555444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-09 Score=99.72 Aligned_cols=211 Identities=12% Similarity=0.013 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCcC-HHHHHHHHHHHHhcCCHHHH
Q 047932 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI----GVHPN-TFVYNTLMDGFCLTGRVNHA 305 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a 305 (598)
++++|...|.+. +..|...|++++|...|.+.... |-.++ ..+++.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 33455667777777777666543 11111 34556666666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEV-HQVEHALKLFDEMQH 384 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 384 (598)
+..+++..... ...|+...+ ..++..+...|... |++++|+..|++..+
T Consensus 97 ~~~~~~Al~l~---------------~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQIF---------------THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHH---------------HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 66666554321 001111100 12333444444443 555555555544433
Q ss_pred CCC----Cc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 385 NDV----AA-DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDI------ISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 385 ~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
... .. ...++..+...+...|++++|+..|+++......... ..+..+..++...|++++|+..+++..
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 210 00 0234455555555556666666655555543221111 134455555556666666666666555
Q ss_pred hCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 047932 454 RVGLLPNV------VTYNIMIHGLC--NDGQMDKAHDLFLDME 488 (598)
Q Consensus 454 ~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 488 (598)
+. .|+. ..+..++.++. ..+++++|+..|+++.
T Consensus 227 ~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 227 SE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 42 2221 12333444443 3345666666665543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=5.2e-09 Score=97.43 Aligned_cols=166 Identities=12% Similarity=-0.036 Sum_probs=89.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKP-DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN-PN----VVTYN 220 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 220 (598)
+..|...|++++|...|++........+ .++ ...+|+.+...|.+.|++++|+..|++....... .+ ..+++
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456677888888888877765321000 011 1456777777777777888777777766542100 01 23555
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCH------HH
Q 047932 221 SLIHCFSHA-DDWNEAKRLFIKMMDQGVHP-N----VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNT------FV 288 (598)
Q Consensus 221 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~ 288 (598)
.+..+|... |++++|+..|++.++..... + ..++..+...+...|++++|+..++++.+....... ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 566666664 66666666666655421000 0 224455555566666666666666665554321111 13
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMES 314 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 314 (598)
+..+..++...|++++|...|++..+
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555555555555555555544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.6e-10 Score=97.67 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=34.1
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNI----------------LFGCLAKNKHYDTVLSLFKRLN 102 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~ 102 (598)
+.+.|++++|+..|+++++.+|. ++.+|.. ++.++.+.|++++|+..|++++
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45788899999999998888876 6666655 4444445555555544444444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-08 Score=98.51 Aligned_cols=349 Identities=9% Similarity=-0.058 Sum_probs=213.9
Q ss_pred CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHH---
Q 047932 154 GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF-VDKAMELFLQMKDE-NIN-PNVVTYNSLIHCFS--- 227 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~--- 227 (598)
|+++.+..+|++.+.. .|+...|...+....+.+. .+....+|+..... |.. .+...|...+..+.
T Consensus 28 ~~~e~~~~iferal~~--------~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~ 99 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--------SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE 99 (493)
T ss_dssp TCHHHHHHHHHHHSTT--------CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS
T ss_pred CCHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch
Confidence 8899999999999984 4689999999888877764 45677888887754 432 36677777776654
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------------CCCHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 047932 228 -HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK-------------NGKMEEASRLLDLMIQIGVHPNTFVYNTLM 293 (598)
Q Consensus 228 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 293 (598)
..++.+.+.++|++.+......-...|......-.. .+.+..|..+++.+...-...+...|...+
T Consensus 100 ~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~ 179 (493)
T 2uy1_A 100 DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLI 179 (493)
T ss_dssp SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 346788999999999874211111223222211101 112233444444443210001233555544
Q ss_pred HHHHhc--CC-----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 047932 294 DGFCLT--GR-----VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGL 366 (598)
Q Consensus 294 ~~~~~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (598)
..-... |- .+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.... + .+...+.. |
T Consensus 180 ~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~----y 252 (493)
T 2uy1_A 180 DLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLY----Y 252 (493)
T ss_dssp HHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHH----H
T ss_pred HHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHH----H
Confidence 433221 11 345677888888753 556888888888888999999999999999887 2 23222221 2
Q ss_pred HhcCCHHHH-HHHHHHHhhCC--------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 367 FEVHQVEHA-LKLFDEMQHND--------VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC 437 (598)
Q Consensus 367 ~~~~~~~~a-~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (598)
....+.++. ..+.+...... .......|...+....+.++.+.|..+|+++ ... ..+..+|...+..-.
T Consensus 253 ~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 253 GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp HHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred HhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 221111111 11221110000 0111245666666666778899999999988 322 235555554443333
Q ss_pred HcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047932 438 KIG-KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSS 516 (598)
Q Consensus 438 ~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 516 (598)
..+ +.+.|..+|+...+. .+-+...|...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 333 699999999998775 22245566677777778899999999998872 25677888877777789888888
Q ss_pred hhHHHHHHHhc
Q 047932 517 RGKLMSQMSSC 527 (598)
Q Consensus 517 ~~~~~~~~~~~ 527 (598)
. +++++.+.
T Consensus 405 ~--v~~~~~~~ 413 (493)
T 2uy1_A 405 E--LVDQKMDA 413 (493)
T ss_dssp H--HHHHHHHH
T ss_pred H--HHHHHHHH
Confidence 8 88888753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.6e-09 Score=96.82 Aligned_cols=212 Identities=9% Similarity=-0.037 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC-CC-HHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHD---VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR-PT-VVTY 359 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~ 359 (598)
+...+..+...+.+.|++++|...|+.+.+.. |.+ ...+..+..+|.+.|++++|+..|+++....+. |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555556666666777777777777666553 222 455566666666667777777777666654221 11 3344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 360 STLFLGLFE--------VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSC 431 (598)
Q Consensus 360 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 431 (598)
..+..++.. .|++++|...|+++++.. +.+......+... ..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 555555555 666666666666665542 1111111111000 000000 0112356
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCC---H
Q 047932 432 LIDGLCKIGKLETAWELFQSLSRVGLLP--NVVTYNIMIHGLCND----------GQMDKAHDLFLDMEAKGVEPD---C 496 (598)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~---~ 496 (598)
+..+|...|++++|+..|+++.+..... ....+..+..+|... |++++|+..|+++++.. |.+ .
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 232 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPLLR 232 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChHHH
Confidence 7788888899999999999887742211 234666777777755 88899999999888753 222 2
Q ss_pred HHHHHHHHHHHhcCCccccch
Q 047932 497 VIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~ 517 (598)
.....+..++.+.|+++++..
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHhhhhhH
Confidence 344555555666666655544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-10 Score=92.90 Aligned_cols=145 Identities=10% Similarity=-0.060 Sum_probs=110.0
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
|..+...|++++|+..|+.+....|. ++..+..++..|.+.|++++|++.|+++++. .|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p----------------- 62 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QE----------------- 62 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-----------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC-----------------
Confidence 45566788899999999988776665 6677888899999999999999999988864 22
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH-H
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL-F 204 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~ 204 (598)
.+..+|..+..+|.+.|++++|+..|+++.+.+ |.+..+|..+...|.+.|++++|.+. +
T Consensus 63 ------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 63 ------------RDPKAHRFLGLLYELEENTDKAVECYRRSVELN-------PTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 366778888888999999999999999888865 45678888888888888888766554 5
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHADD 231 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (598)
++..+..+ -+..+|......+...|+
T Consensus 124 ~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 124 ERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 77766532 266677766666666554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-07 Score=86.44 Aligned_cols=231 Identities=10% Similarity=0.047 Sum_probs=173.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHH
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK--HYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLR 132 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~ 132 (598)
.++|++.++.++..+|. +..+|+.-..++...| ++++++.+++.++.. .|.
T Consensus 49 s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk----------------------- 101 (306)
T 3dra_A 49 SERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEK----------------------- 101 (306)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTT-----------------------
T ss_pred CHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--Ccc-----------------------
Confidence 47999999999999998 8999999999998888 888888888887764 222
Q ss_pred HcCCCCCHhhHHHHHHHH----Hhc---CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHH--HHHHH
Q 047932 133 VFGCEPDVFTYNTLINGL----CRT---GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVD--KAMEL 203 (598)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~ 203 (598)
+..+|+.-..++ ... +++++++.+++.+.+.+ +.+..+|+.-...+.+.|.++ ++++.
T Consensus 102 ------~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 102 ------NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 334444433333 344 78999999999999986 678889988888888889888 99999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHH-HHHHHHH
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADD------WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEE-ASRLLDL 276 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 276 (598)
++.+.+.++. |..+|+.....+...+. ++++++.+++++... +-|...|+.+...+.+.|+... +......
T Consensus 169 ~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 169 VDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 9999987655 88888887777777776 888999998888774 4477788888888888887444 4455555
Q ss_pred HHhcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047932 277 MIQIG--VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL 327 (598)
Q Consensus 277 ~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (598)
+...+ -..++..+..++.++.+.|+.++|.++++.+.+.--|.....|+..
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 54432 1336677777888888888888888888888763213344444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.9e-09 Score=95.36 Aligned_cols=101 Identities=9% Similarity=-0.019 Sum_probs=80.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD---TVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN- 213 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 213 (598)
.+...+..++..+.+.|++++|+..|+++.+.. +.+ ...+..+..+|.+.|++++|+..|+.+.+....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 356677788888899999999999999998865 333 677888889999999999999999998875321
Q ss_pred -CCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 047932 214 -PNVVTYNSLIHCFSH--------ADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 214 -~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 245 (598)
....++..+..++.. .|++++|+..|+++++.
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 124567777888888 89999999999998876
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.6e-10 Score=115.43 Aligned_cols=172 Identities=12% Similarity=-0.059 Sum_probs=105.4
Q ss_pred ccCCChHHHHHHHHHHH--------HcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccH
Q 047932 50 INLITPNEALCIFDYML--------RMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRI 121 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 121 (598)
...|++++|++.|++++ +.+|. +..++..++..+.+.|++++|+..|+++++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------------- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERV---------------- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----------------
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC----------------
Confidence 35667777777777776 55554 66667777777777777777777777666431
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHH
Q 047932 122 MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAM 201 (598)
Q Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 201 (598)
+.+...|..+..+|...|++++|+..|+++.+.+ +.+...|..+..++.+.|++++ +
T Consensus 464 ---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~~lg~~~~~~g~~~~-~ 520 (681)
T 2pzi_A 464 ---------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-------PGELAPKLALAATAELAGNTDE-H 520 (681)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHHTCCCT-T
T ss_pred ---------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCChHH-H
Confidence 2245566666666777777777777777766654 3455666666667777777777 6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCC
Q 047932 202 ELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTFSVIVDELCKNG 265 (598)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 265 (598)
+.|+++.+.+.. +...|..+..++...|++++|++.|++..+. .|+ ...+..+..++...+
T Consensus 521 ~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 521 KFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp CHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 667666654322 5556666666667777777777766666543 232 344544555544433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.1e-09 Score=90.61 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=90.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+...+..+...|++++|+..|++..+.+ |.+...|... .... .........
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~-----~~~~--------------~~~~~~~~~ 57 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------IDRTEMYYWT-----NVDK--------------NSEISSKLA 57 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------HHHHHHHHHH-----HSCT--------------TSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHh-----hhcc--------------hhhhhHHHH
Confidence 3445556777889999999999999999865 3334445440 0000 000011222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT 299 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 299 (598)
..+..+|...|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++++.. +.+..++..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 334555555555555555555555542 2234455555555555555555555555555543 22344555555544443
Q ss_pred CC--HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 300 GR--VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 300 g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
|+ ...+...++..... .|....+.....++...|++++|+..|++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 32 22333333333221 112222233344444556666666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-08 Score=82.47 Aligned_cols=130 Identities=14% Similarity=0.255 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
++..++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 45566667777777777777777776654 3456666667777777777777777777766543 224556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++.+...
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666677777777777776666542 234455556666666666666666666666543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=7.9e-09 Score=83.34 Aligned_cols=128 Identities=11% Similarity=0.133 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (598)
+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444555555555555555555555432 2244555555555555666666666666555432 2234455555555666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 474 DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
.|++++|.++++++.+.. +.+...+..++.++...|++++|.. .++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~--~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIE--YYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH--HHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHH--HHHHHHc
Confidence 666666666666655543 3345555555666666666666666 6665553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=93.00 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=89.6
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+.+.|++++|...|+++++.+|. ++.++..++.++.+.|++++|+..|++++... |+.... .
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~-~------------- 77 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYK-S------------- 77 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHH-H-------------
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHH-H-------------
Confidence 44678888888888888887776 78888888888888888888888888876542 222111 1
Q ss_pred HHHHHcCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 129 TKLRVFGCEPDVFTYNTLING-LCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
.+... +...++...|+..+++..+.+ |.+...+..+...+...|++++|...|+++
T Consensus 78 ----------------~~~~~~~~~~~~~~~a~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 78 ----------------LIAKLELHQQAAESPELKRLEQELAAN-------PDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp ----------------HHHHHHHHHHHTSCHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHhhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00000 111122233455555555543 334555555556666666666666666655
Q ss_pred hhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 208 KDENINP-NVVTYNSLIHCFSHADDWNEAKRLFIKMM 243 (598)
Q Consensus 208 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (598)
.+....+ +...+..+..++...|+.++|...|++.+
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5543221 23455555555555566555555555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.3e-07 Score=83.64 Aligned_cols=235 Identities=8% Similarity=-0.024 Sum_probs=170.4
Q ss_pred HhcCCh-hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-
Q 047932 151 CRTGHT-IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG--FVDKAMELFLQMKDENINPNVVTYNSLIHCF- 226 (598)
Q Consensus 151 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~- 226 (598)
.+.|.+ ++|+.+++.++..+ |.+..+|+.-...+...| +++++++.++.+...+.+ +..+|+.-...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~ 114 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIG 114 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence 344444 68999999999876 556778888888888888 899999999999887544 666777665555
Q ss_pred ---Hhc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHH--HHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 227 ---SHA---DDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKME--EASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 227 ---~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
... +++++++++++++++.. +-+..+|+....++.+.|.++ ++++.++.+++.... |...|+.-...+..
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 455 78899999999998874 447788888888888888888 899999999887643 67777776666666
Q ss_pred cCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHccCC--CCCCHHHHHHHHHHHHhc
Q 047932 299 TGR------VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEE-ALNLYRKMLPKG--IRPTVVTYSTLFLGLFEV 369 (598)
Q Consensus 299 ~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 369 (598)
.|. ++++++.++.+.... +.|...|+.+...+.+.|+... +.+...++...+ -..+...+..++..+.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 665 778888888877764 5577888888777777776433 455666655432 123566777777777777
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 047932 370 HQVEHALKLFDEMQHNDVAADTYIYNT 396 (598)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ 396 (598)
|+.++|.++++.+.+.--+.....|+.
T Consensus 272 ~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 777888888877765311334444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=89.64 Aligned_cols=144 Identities=10% Similarity=-0.086 Sum_probs=92.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (598)
..+...|++++|+..+....... +.+...+..+...|.+.|++++|+..|+++++.. +-+..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 33445566677777766665532 2234445566677777777777777777777654 336677777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDL-FLDMEAKGVEPDCVIFNTIMLGFIRNNE 511 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 511 (598)
+|+..|++..+.. +-+...|..+...|.+.|++++|.+. ++++++.. |-++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 7777777777642 12466677777777777777665554 46666653 4456666666666666664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-09 Score=110.77 Aligned_cols=177 Identities=10% Similarity=-0.014 Sum_probs=141.4
Q ss_pred HhcCCHHHHHHHHHHHc--------cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Q 047932 332 CKTKNVEEALNLYRKML--------PKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK 403 (598)
Q Consensus 332 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (598)
...|++++|++.+++.. ... +.+...+..+...+...|++++|...|+++.+.+ +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999987 432 2356778888889999999999999999998764 5578888899999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 404 NGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDL 483 (598)
Q Consensus 404 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 483 (598)
.|++++|+..|+++.+.. +.+...+..+..++...|++++ +..|+++.+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998765 3467888899999999999999 99999998853 23577889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCccc
Q 047932 484 FLDMEAKGVEPDCVIFNTIMLGFIRNNETSK 514 (598)
Q Consensus 484 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 514 (598)
|+++.+.+ +.+...+..+..++...|+.++
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-------
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCCCCC
Confidence 99988754 3346777888888877666333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-08 Score=86.25 Aligned_cols=176 Identities=12% Similarity=-0.022 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC----CHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG----FVD 198 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~ 198 (598)
+|.+.|++..+.| +..++..|...|...+++++|+..|++..+.+ +...+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 4556666666543 66777777777777888888888888777644 45666677777766 5 777
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh----CCCHHH
Q 047932 199 KAMELFLQMKDENINPNVVTYNSLIHCFSH----ADDWNEAKRLFIKMMDQGVH-PNVVTFSVIVDELCK----NGKMEE 269 (598)
Q Consensus 199 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~ 269 (598)
+|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888887776653 56667777777766 67777777777777765421 015566667777766 667777
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 047932 270 ASRLLDLMIQIGVHPNTFVYNTLMDGFCLT-G-----RVNHAKELFVSMESNG 316 (598)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 316 (598)
|..+|++..+. ..+...+..|..+|... | ++++|...|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777777665 12344555566665543 2 6777777777766655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-08 Score=105.38 Aligned_cols=154 Identities=9% Similarity=-0.031 Sum_probs=115.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKL 131 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~ 131 (598)
.|++++|.+.|+++++.+|. +..+|..++..+.+.|++++|...|+++++.. |
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p----------------------- 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH--P----------------------- 54 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--T-----------------------
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-----------------------
Confidence 47899999999999998886 88999999999999999999999999998652 2
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 132 RVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDEN 211 (598)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 211 (598)
.+...+..+..+|...|++++|.+.|++..+.+ +.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 55 ------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 55 ------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 256678888899999999999999999988875 5567888999999999999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 047932 212 INPNVVTYNSLIHCFSHA---DDWNEAKRLFIKMMDQG 246 (598)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 246 (598)
. .+...+..+..++... |++++|.+.+++..+.+
T Consensus 122 p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 122 P-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp T-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred C-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 3 3677888888999888 99999999999988764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-08 Score=86.14 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047932 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG----RVNHAKELFVSMESNGCMHDVVSYTTLI 328 (598)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (598)
.+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..+.+ +...+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33333444444444444444444443332 23333333333333 3 3444444444443332 333333344
Q ss_pred HHHHh----cCCHHHHHHHHHHHccC
Q 047932 329 NGYCK----TKNVEEALNLYRKMLPK 350 (598)
Q Consensus 329 ~~~~~----~~~~~~A~~~~~~~~~~ 350 (598)
..|.. .+++++|+..|++..+.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 33333 34444444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=87.26 Aligned_cols=163 Identities=14% Similarity=0.094 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+..+...+.+.|++++|...|+++.+.+ |.+...+..+...+...|++++|+..|+.+.... |+...+.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~ 77 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKS 77 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHH
Confidence 345667777888888888888888887764 5567888888888888888888888888877642 2443333
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHh
Q 047932 221 SLIHC-FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP-NTFVYNTLMDGFCL 298 (598)
Q Consensus 221 ~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~ 298 (598)
.+... +...+....|...+++..+.. +.+...+..+..++...|++++|...++++++....+ +...+..+..++..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 22212 112222234567777766652 2346667777777777777777777777777654322 24466677777777
Q ss_pred cCCHHHHHHHHHHHH
Q 047932 299 TGRVNHAKELFVSME 313 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~ 313 (598)
.|+.++|...|++..
T Consensus 157 ~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 157 LGQGNAIASKYRRQL 171 (176)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 777777777776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-08 Score=91.22 Aligned_cols=166 Identities=8% Similarity=-0.009 Sum_probs=122.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVV 217 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 217 (598)
.+...+..+...+.+.|++++|...|+++.+.. |.+...+..+...+.+.|++++|...++++... .|+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~ 185 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTR 185 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchH
Confidence 355667778888888899999999999888875 556788888888888899999999888888765 33433
Q ss_pred HHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-cCHHHHHHHHHH
Q 047932 218 TYN-SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVH-PNTFVYNTLMDG 295 (598)
Q Consensus 218 ~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~ 295 (598)
... .....+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++++.... .+...+..++..
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 322 22333566677777888888877763 446677778888888888888888888888876422 125677778888
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 047932 296 FCLTGRVNHAKELFVSME 313 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~ 313 (598)
+...|+.++|...+++..
T Consensus 265 ~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 265 LAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHH
Confidence 888888888887777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-07 Score=84.13 Aligned_cols=189 Identities=8% Similarity=-0.015 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT 153 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (598)
++..+..++..+.+.|++++|+..|+++++. .|+. ......+..++.+|.+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~--------------------------~~~~~a~~~lg~~~~~~ 54 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFG--------------------------PYSQQVQLDLIYAYYKN 54 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTS--------------------------TTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------------------------hHHHHHHHHHHHHHHhc
Confidence 4567778888899999999999999998864 2210 11235677788999999
Q ss_pred CChhHHHHHHHHHHhcCCCCccccCCCH---hHHHHHHHHHHh------------------cCCHHHHHHHHHHHhhCCC
Q 047932 154 GHTIVALNLFEEMANGNGEFGVVCKPDT---VTYNTIIDGVCK------------------EGFVDKAMELFLQMKDENI 212 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~------------------~g~~~~A~~~~~~~~~~~~ 212 (598)
|++++|+..|+++.+..+ .+. ..+..+..++.. .|++++|...|+++.+...
T Consensus 55 ~~~~~A~~~~~~~l~~~P-------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 55 ADLPLAQAAIDRFIRLNP-------THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp TCHHHHHHHHHHHHHHCT-------TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHHHCc-------CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 999999999999988652 222 245555555544 4567777777777766421
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--CHHHHH
Q 047932 213 NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP--NTFVYN 290 (598)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 290 (598)
-+...+....... .+...+. .....+...+.+.|++++|+..|+.+++..... ....+.
T Consensus 128 -~~~~a~~a~~~l~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 188 (225)
T 2yhc_A 128 -NSQYTTDATKRLV----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP 188 (225)
T ss_dssp -TCTTHHHHHHHHH----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred -CChhHHHHHHHHH----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence 1222222111100 0000000 011345677888899999999999988763221 124677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 291 TLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 291 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
.+..++.+.|+.++|.+.++.+...+
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 78888999999999999998888764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-07 Score=83.24 Aligned_cols=190 Identities=11% Similarity=-0.058 Sum_probs=126.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CH-
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP-NV- 216 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~- 216 (598)
+...+..++..+.+.|++++|+..|+++....+. .+.....+..++.+|.+.|++++|+..|+++.+..... ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH
Confidence 3455667788899999999999999999886511 01113577888999999999999999999998753321 11
Q ss_pred HHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047932 217 VTYNSLIHCFSH------------------ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 217 ~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (598)
.++..+..++.. .|++++|...|+++++.. +-+........... .+...+
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~- 146 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL- 146 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-
Confidence 244445555543 456777777777776642 11222222111100 000000
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCC
Q 047932 279 QIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHD---VVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352 (598)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 352 (598)
......+...|.+.|++++|...|+.+.+.. |.+ ...+..+..+|.+.|++++|.+.++.+...++
T Consensus 147 -------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0112346678999999999999999998863 222 25688899999999999999999999887643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.2e-08 Score=90.88 Aligned_cols=163 Identities=10% Similarity=0.017 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHH-HHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTY-STLF 363 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 363 (598)
+...+..+...+...|++++|...|+++.... |.+...+..+...+...|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 33444555555566666666666666655543 3345555556666666666666666666555442 222211 1111
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL-DIISYSCLIDGLCKIGKL 442 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 442 (598)
..+...++.+.|...++++.... +.+...+..+...+...|++++|+..|.++++..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 22333444444444454444432 3334444444455555555555555555444332110 133444444444444444
Q ss_pred HHHHHHHHH
Q 047932 443 ETAWELFQS 451 (598)
Q Consensus 443 ~~A~~~~~~ 451 (598)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 444444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-08 Score=99.82 Aligned_cols=154 Identities=12% Similarity=-0.014 Sum_probs=118.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (598)
.|++++|.+.|+++.+.+ +.+...|..+...+...|++++|.+.|++..+... .+...+..+..+|...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCH
Confidence 478899999999998865 55688999999999999999999999999998643 3678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHH
Q 047932 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT---GRVNHAKELF 309 (598)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~ 309 (598)
++|.+.+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+
T Consensus 74 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999998874 3467788899999999999999999999998874 33677888899999999 9999999999
Q ss_pred HHHHHCC
Q 047932 310 VSMESNG 316 (598)
Q Consensus 310 ~~~~~~~ 316 (598)
++..+.+
T Consensus 152 ~~al~~~ 158 (568)
T 2vsy_A 152 RAAVAQG 158 (568)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9998875
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.7e-08 Score=91.62 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=83.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK-EGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADD 231 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (598)
.|++++|.+++++..+.. +.. +.+ .++++.|...|.++ ...|...|+
T Consensus 4 ~~~~~eA~~~~~~a~k~~-------~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~ 51 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-------KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQ 51 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-------CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHc-------ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCC
Confidence 456677777777766542 110 011 35666666665544 345566677
Q ss_pred HHHHHHHHHHHHHCCC----CC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C-Cc--CHHHHHHHHHHHHhcCC
Q 047932 232 WNEAKRLFIKMMDQGV----HP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIG--V-HP--NTFVYNTLMDGFCLTGR 301 (598)
Q Consensus 232 ~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~--~~~~~~~ll~~~~~~g~ 301 (598)
+++|...|.+..+... .. -..+|..+..+|...|++++|+..+++.++.- . .+ ...++..+..+|.. |+
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 7777777766554210 00 12355566666666777777776666655431 0 01 12344455555555 66
Q ss_pred HHHHHHHHHHHHHCCCC----C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 302 VNHAKELFVSMESNGCM----H-DVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 302 ~~~a~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
+++|+..|++....... . ...++..+...|...|++++|+..|++..
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666555432100 0 12334444555555555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-07 Score=84.91 Aligned_cols=210 Identities=9% Similarity=-0.047 Sum_probs=144.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNIL-------FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIME 123 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 123 (598)
..+++..|.+.|.++.+.+|. ....|..+ ...+.+.++..+++..+.+.+.. .|+......-|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g---- 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGG---- 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCT----
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCC----
Confidence 579999999999999999997 99999988 56666666666666666665542 3322110000000
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
+|.. +..-+..-...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..
T Consensus 90 ---~y~~-~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--------p~~~~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 90 ---LYGD-ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--------SEHLVAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp ---TTCC-CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--------CHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---cccc-cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHcCCHHHHHHH
Confidence 0000 000000012344567788889999999999999887754 3333666777788999999999999
Q ss_pred HHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 204 FLQMKDENINPN--VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN--VVTFSVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 204 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
|+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++..
T Consensus 158 l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 158 VKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98665531 111 23677788889999999999999999875433243 33556677788899999999999999988
Q ss_pred cC
Q 047932 280 IG 281 (598)
Q Consensus 280 ~~ 281 (598)
..
T Consensus 237 ~~ 238 (282)
T 4f3v_A 237 TH 238 (282)
T ss_dssp HS
T ss_pred cC
Confidence 63
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.6e-08 Score=89.83 Aligned_cols=137 Identities=12% Similarity=-0.044 Sum_probs=90.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP----- 214 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----- 214 (598)
..+|+.+..+|.+.|++++|+..|++........+. ......++..+...|.. |++++|+..|++........
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 346888899999999999999999987754210000 01113567778888877 88888888888776531100
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047932 215 NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG----VHPN-VVTFSVIVDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (598)
...++..+...|...|++++|+..|++.+... ..+. ...+..++.++...|++++|...+++.+
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 13466777777888888888888887776531 1111 1244555566666777777777777776
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.3e-06 Score=77.17 Aligned_cols=174 Identities=10% Similarity=0.044 Sum_probs=132.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
.+..++|++.++.++..+|. +..+|+.-..++...| .+++++.+++.++... |
T Consensus 67 ~e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--P---------------------- 120 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--L---------------------- 120 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--C----------------------
T ss_pred CCCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--C----------------------
Confidence 34457899999999999997 8999998888888888 4888888888877652 2
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhc-C-ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHH--------HH
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRT-G-HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVD--------KA 200 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A 200 (598)
.+..+|+.-..++.+. + ++++++++++.+...+ +.|..+|+.-...+.+.|.++ ++
T Consensus 121 -------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 121 -------KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp -------CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred -------CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHH
Confidence 3556677666666665 6 8899999999999886 667888877766666666666 88
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCH
Q 047932 201 MELFLQMKDENINPNVVTYNSLIHCFSHADD-------WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKM 267 (598)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 267 (598)
++.++++.+..+. |..+|+.....+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|..
T Consensus 187 Le~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 187 LDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 8899988887554 88888888888777776 688888888888763 44667777766666665553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-07 Score=73.29 Aligned_cols=111 Identities=14% Similarity=0.016 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 470 (598)
...+......+.+.|++++|+..|+++++.. +.+..+|..+..+|...|++++|+..+++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456667777888888888888888877654 4467778888888888888888888888887753 2246777788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
+...|++++|++.|++.++.. |-+...+..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 888888888888888887754 445555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.4e-06 Score=76.62 Aligned_cols=176 Identities=9% Similarity=-0.009 Sum_probs=128.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 047932 150 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG-FVDKAMELFLQMKDENINPNVVTYNSLIHCFSH 228 (598)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 228 (598)
..+.+..++|+++++.++..+ +.+..+|+.-...+...| .+++++++++.+...+.+ +..+|+.-..++..
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 334455578999999998876 556778888888888888 599999999999887554 77788887777766
Q ss_pred c-C-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHH--------HHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 229 A-D-DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKME--------EASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 229 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
. + ++++++++++++++.. +.|..+|+....++.+.|.++ ++++.++++++.... |...|+.....+.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 6 6 7889999999988764 446777777666666655555 788888888877533 67777777777766
Q ss_pred cCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047932 299 TGR-------VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKN 336 (598)
Q Consensus 299 ~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 336 (598)
.+. ++++++.++++.... +.|...|+.+-..+.+.|.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 665 567777777777654 4567777766666665554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.5e-08 Score=81.33 Aligned_cols=126 Identities=11% Similarity=0.132 Sum_probs=103.2
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
+..+...|++++|...|+.++...|. ++.+|..++..+...|++++|+..|+++++..
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------------------- 74 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------------------- 74 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------
Confidence 34467889999999999999999886 88999999999999999999999999988541
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHH-HHhcCCh--hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLING-LCRTGHT--IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAME 202 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 202 (598)
+.+...+..+..+ +...|++ ++|...|+++.+.+ +.+...+..+...+...|++++|..
T Consensus 75 -----------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 75 -----------GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp -----------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHH
Confidence 2355677778888 7789998 99999999998875 5567888899999999999999999
Q ss_pred HHHHHhhCC
Q 047932 203 LFLQMKDEN 211 (598)
Q Consensus 203 ~~~~~~~~~ 211 (598)
.|+.+....
T Consensus 137 ~~~~al~~~ 145 (177)
T 2e2e_A 137 LWQKVMDLN 145 (177)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhC
Confidence 999988863
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.5e-06 Score=76.88 Aligned_cols=172 Identities=10% Similarity=0.046 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---CC--
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN---PN-- 215 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~-- 215 (598)
..+...+..+...|++++|.+.++...+...... ........+..+...+...|++++|+..+++....... +.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3455667788899999999999988877541000 00001123444666677888899999988887753211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CC-c
Q 047932 216 VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ--GVHPN----VVTFSVIVDELCKNGKMEEASRLLDLMIQIG----VH-P 284 (598)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~ 284 (598)
..+++.+...|...|++++|...|++..+. ..+.+ ..++..+..+|...|++++|+..+++.++.. .. .
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 447788888888888888888888887621 01111 1467777888888888888888888776531 00 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHA-KELFVSME 313 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~ 313 (598)
-..++..+..+|...|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145666777777777777777 55566544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=7.3e-07 Score=78.37 Aligned_cols=130 Identities=12% Similarity=-0.002 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+..+...+...|++++|+..|++.. .++...|..+...+...|++++|++.|++..... +.+...+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 75 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 345567777888888888888888763 3467788888888888888888888888887753 33677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------------CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHP---------------NVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
.+..+|...|++++|...|++..+..... ....+..+..++...|++++|...++.+.+..
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888888888888888753211 11566777778888888888888888887754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-07 Score=80.21 Aligned_cols=127 Identities=11% Similarity=-0.063 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 472 (598)
.+..+...+...|++++|...|+++. .|+..++..+..+|...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667788888888888888774 4577888888888888899999999888887753 335677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 473 NDGQMDKAHDLFLDMEAKGVEPDC----------------VIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
..|++++|++.|+++.+.. +.+. ..+..+..+|...|++++|.+ .++++.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE--QLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH--HHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH--HHHHHHHc
Confidence 8999999999998888753 2222 678888889999999999999 99999855
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.8e-07 Score=72.27 Aligned_cols=97 Identities=12% Similarity=0.176 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+...+..|.+.|++++|++.|++..+.+ |.+...|..+..+|.+.|++++|++.|++..+.+.. +...|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 345666677777777777777777776654 455666777777777777777777777776664322 556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
.+..++...|++++|++.|++.++.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6667777777777777777766664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.7e-06 Score=76.31 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=86.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cC----HHHHHHH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGI-RPTV----VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVA-AD----TYIYNTF 397 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 397 (598)
+..+...|++++|..++++...... .|+. ..+..+...+...+++++|...+.++...... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776655321 1111 11223444445556666776666666653111 11 2346666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 047932 398 IDGLCKNGFVLEALELFCAIGN----S-KYEL-DIISYSCLIDGLCKIGKLETAWELFQSLSRV----GLLPN-VVTYNI 466 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~ 466 (598)
..+|...|++++|...|+++.+ . +..+ ...++..+..+|...|++++|+..+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666666552 1 1111 1225566666666666666666666665431 11111 445666
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHH
Q 047932 467 MIHGLCNDG-QMDKAHDLFLDME 488 (598)
Q Consensus 467 l~~~~~~~g-~~~~A~~~~~~~~ 488 (598)
+..++.+.| ++++|.+.++++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 666666666 3466666666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-06 Score=81.10 Aligned_cols=190 Identities=12% Similarity=0.001 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG--FVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGK-LETAWEL 448 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 448 (598)
+++++.+++.+...+ +.+..+|+.-...+...| .+++++.+++.+.+.. +-|..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777777654 556777777776777777 4788888888888765 4477788877777777787 5888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 047932 449 FQSLSRVGLLPNVVTYNIMIHGLCND--------------GQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRN----- 509 (598)
Q Consensus 449 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 509 (598)
++++++..+. |...|+.....+... +.++++++.+.+++... |-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 8888876433 677777666555543 45788999999888765 66777887665555554
Q ss_pred ------CCccccchhHHHHHHHhcccCCCCCChHHHHH----HHH----HhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 510 ------NETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIM----LQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 510 ------g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~----~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
+..+++++ .++++.+. .||. .|.. ++. ..+..++....+.+++++||.....|..+
T Consensus 246 ~~~~~~~~l~~el~--~~~elle~-----~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 246 LSVEKSTVLQSELE--SCKELQEL-----EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp CCHHHHHHHHHHHH--HHHHHHHH-----CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cchHHHHHHHHHHH--HHHHHHhh-----Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 45678888 89999855 7877 4544 111 12344466788999999999999988766
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-08 Score=81.19 Aligned_cols=98 Identities=16% Similarity=0.046 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG 505 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 505 (598)
...+..+...+...|++++|+..|+++.... +.+...|..+..+|...|++++|+..|+++++.. |.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3345555555556666666666666655532 1235555555555666666666666666665543 3345555555666
Q ss_pred HHhcCCccccchhHHHHHHHhc
Q 047932 506 FIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
|...|++++|.. .++++++.
T Consensus 114 ~~~lg~~~eA~~--~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKE--CFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHH--HHHHHHHh
Confidence 666666666666 66665533
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=7.5e-07 Score=82.81 Aligned_cols=166 Identities=10% Similarity=0.054 Sum_probs=113.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC---
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT----VTYNTIIDGVCKEGFVDKAMELFLQMKDENIN-PN--- 215 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~--- 215 (598)
...+..+...|++++|..++++...... ..++. ..+..+...+...|++++|+..|+++...... ++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 3346778899999999999999887541 12221 13335677777788999999999988874222 22
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCc
Q 047932 216 -VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ-----GVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIG----VHP 284 (598)
Q Consensus 216 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~ 284 (598)
..+++.+..+|...|++++|...|+++++. +..+. ..++..+..+|.+.|++++|...+++.++.. ..+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 236888888899999999999999888741 11111 2366777888888888888888888776531 111
Q ss_pred -CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 047932 285 -NTFVYNTLMDGFCLTGR-VNHAKELFVSMES 314 (598)
Q Consensus 285 -~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~ 314 (598)
-..++..+..++...|+ +++|.+.+++...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 14567777777777774 5777777776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.5e-07 Score=84.26 Aligned_cols=99 Identities=13% Similarity=-0.014 Sum_probs=75.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..++..+.+.|++++|+..|+++.... +.+...|..+...|.+.|++++|...+++..+... .+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHH
Confidence 45567777788888888888888888887764 45677788888888888888888888888877532 35667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
+..+..+|...|++++|...|++..+.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777888888888888888888877654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.9e-07 Score=71.57 Aligned_cols=120 Identities=9% Similarity=0.002 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+...+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34566667777778888888888888777653 3467777788888888888888888888877752 234667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047932 470 GLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNET 512 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 512 (598)
++...|++++|...++++.+.. +.+...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888887764 44667777777777777765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=94.65 Aligned_cols=167 Identities=11% Similarity=-0.016 Sum_probs=121.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
..+++++|+..|+......|. +...|..+...+.+.|++++|+..|++++... |+...+ ..+.+...
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~------~~~~~~~~--- 191 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF------SNEEAQKA--- 191 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC------CSHHHHHH---
T ss_pred EEeecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC------ChHHHHHH---
Confidence 445677788888777766665 77899999999999999999999999998753 221000 00000000
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
. +....+|..+..+|.+.|++++|+..|+++.+.+ +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 192 -~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 192 -Q----ALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp -H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -H----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0 0124677888888999999999999999988875 556788888888888999999999999888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 047932 211 NINPNVVTYNSLIHCFSHADDWNEA-KRLFIKMM 243 (598)
Q Consensus 211 ~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 243 (598)
.. .+...+..+..++...|+.+++ ...|..|.
T Consensus 260 ~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 260 YP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3667788888888888888877 44555554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-07 Score=75.11 Aligned_cols=128 Identities=8% Similarity=-0.083 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 472 (598)
.+..+...+...|++++|...|+++.... +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44555566666777777777777666543 3356666667777777777777777777766642 224556666677777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCccccchhHHHHHHH
Q 047932 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTI--MLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
..|++++|...++++.+.. +.+...+..+ +..+...|++++|.+ .++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA--GDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHH--cccchH
Confidence 7777777777777776653 3344444333 333566677777777 666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.66 E-value=8.9e-07 Score=74.13 Aligned_cols=128 Identities=9% Similarity=0.012 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+..++..+...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..... +.+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 85 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 345556666666777777777777666653 3456666666666666666666666666666542 22455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH--HHHHHHhCCCHHHHHHHHHHH
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSV--IVDELCKNGKMEEASRLLDLM 277 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~ 277 (598)
.+..++...|++++|...|++..+.. +.+...+.. .+..+...|++++|...+...
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666666666665542 123333322 222244555555555555544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-06 Score=69.28 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 470 (598)
...+..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4455666666777777777777777766543 3356666777777777777777777777776642 2345666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047932 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRN 509 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 509 (598)
+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 777777777777777776653 34555555555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=9.4e-08 Score=78.39 Aligned_cols=111 Identities=10% Similarity=0.015 Sum_probs=84.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCC
Q 047932 60 CIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPD 139 (598)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~ 139 (598)
..|++++..+|. +...+..++..+.+.|++++|+..|++++... +.+
T Consensus 8 ~~~~~al~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------p~~ 54 (148)
T 2vgx_A 8 GTIAMLNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------------------------------HYD 54 (148)
T ss_dssp CSHHHHTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------TTC
T ss_pred hhHHHHHcCCHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------------------------------ccc
Confidence 456666666655 77778888888888888888888888877541 235
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
...|..+..+|...|++++|+..|+++...+ +.+...+..+..+|...|++++|.+.|+...+.
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-------IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677778888888888888888888888765 456777888888888888888888888887764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=4.3e-06 Score=77.64 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CcC--HHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV-----VTYSTLFLGLFEVHQVEHALKLFDEMQHNDV---AAD--TYI 393 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~ 393 (598)
+...+..+...|++++|.+.+.+.......... ..+..+...+...|++++|...+.++..... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455566666777776666665543221110 1122333444555666666666666554211 111 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh---CCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC-HH
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGN---SKY-EL--DIISYSCLIDGLCKIGKLETAWELFQSLSRVG----LLPN-VV 462 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~ 462 (598)
++.+...|...|++++|...|+++.+ ... .+ ...++..+..+|...|++++|+..+++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 66666666666666666666666551 110 00 11456666666777777777777766654421 1111 44
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 047932 463 TYNIMIHGLCNDGQMDKA-HDLFLDME 488 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A-~~~~~~~~ 488 (598)
+|..+..+|...|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 566666666677777776 55566554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=7e-07 Score=71.48 Aligned_cols=119 Identities=10% Similarity=-0.013 Sum_probs=81.7
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047932 389 ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMI 468 (598)
Q Consensus 389 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 468 (598)
.+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|+..++++.+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345666677777777777777777777777553 3366677777777777778888888777777642 23566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 469 HGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
.++...|++++|++.|++..+.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77777888888888887777653 334456666666665554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=9.8e-07 Score=70.58 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=54.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGY 87 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHH
Confidence 3445555556666666666666666655543 3345555555555555666666666665555432 1244455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|.+.|++..+.
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555555555555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-06 Score=68.91 Aligned_cols=98 Identities=15% Similarity=0.266 Sum_probs=56.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++.... +.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHH
Confidence 3445555666666666666666666665543 3345555566666666666666666666655532 2244555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|...++++.+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 55555566666666666666655544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=77.68 Aligned_cols=96 Identities=13% Similarity=-0.022 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047932 427 ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF 506 (598)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 506 (598)
..+..+...+...|++++|+..|+++.... +.+...|..+..++...|++++|+..|++++... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344444555555555555555555554432 1234445555555555555555555555555433 33444555555555
Q ss_pred HhcCCccccchhHHHHHHHh
Q 047932 507 IRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~ 526 (598)
...|++++|.. .++++++
T Consensus 100 ~~~g~~~~A~~--~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAES--GLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHH--HHHHHHH
Confidence 55555555555 5555543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5.7e-07 Score=73.58 Aligned_cols=96 Identities=10% Similarity=-0.024 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
.+..+...+.+.|++++|+..|+++...+ |.+...|..+..+|...|++++|+..|+++...... +...|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 44455555555555555555555555543 334555555555555555555555555555543221 4445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
+..+|...|++++|...|++.++.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555555543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=8e-07 Score=77.36 Aligned_cols=133 Identities=10% Similarity=-0.047 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCC--CC
Q 047932 357 VTYSTLFLGLFEVHQVEHALKLFDEMQHN----DV-AADTYIYNTFIDGLCKNGFVLEALELFCAIGNS----KYE--LD 425 (598)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~ 425 (598)
..+..+...+...|++++|...+++.... +. +.....+..+...+...|++++|...+++.... +.. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34444444444455555555554444331 11 112334445555555566666666555554421 101 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGL-LPN----VVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
..++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 23455556666666666666666665543100 011 12345556666666777776666666553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=69.22 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+..++..+...|++++|...|+++.... +.+...+..+...+...|++++|.+.++...... +.+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHH
Confidence 344455555555555555555555555443 3344455555555555555555555555554432 12344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNG 265 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 265 (598)
.+..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 55555555555555555555554432 123333444444444333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-06 Score=76.78 Aligned_cols=187 Identities=7% Similarity=-0.041 Sum_probs=122.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCCC---------
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTI-------IDGVCKEGFVDKAMELFLQMKDENINPN--------- 215 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 215 (598)
..++...|.+.|.++...+ |.....|..+ ...+.+.++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIG 88 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECC
T ss_pred cCCCHHHHHHHHHHHHHhC-------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccC
Confidence 6899999999999999976 5567888877 4666666666666666655554 1221
Q ss_pred -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 216 -------------VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 216 -------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~- 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP- 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-
Confidence 1233445666777888888888887776543 333344555567778888888888887554431
Q ss_pred CcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 283 HPN--TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMH--DVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 283 ~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
.|. ...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111 2356666677777777777777777776432212 2334555666677777777777777777765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-07 Score=83.11 Aligned_cols=95 Identities=8% Similarity=-0.097 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q 047932 217 VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGF 296 (598)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (598)
..+..+...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++++++.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334444444444444444444444444431 1133344444444444444444444444444432 12333444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 047932 297 CLTGRVNHAKELFVSME 313 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~ 313 (598)
...|++++|...|+...
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.9e-07 Score=77.76 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=93.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHHHHHHHHHH
Q 047932 151 CRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE----NIN-PNVVTYNSLIHC 225 (598)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~ 225 (598)
...|++++|.++++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-------PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV 75 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-------TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4578888888855555432 1234677788888888888888888888877652 111 123466677777
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCC--CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCcC--HHHHHHHHH
Q 047932 226 FSHADDWNEAKRLFIKMMDQ----GVHP--NVVTFSVIVDELCKNGKMEEASRLLDLMIQIG---VHPN--TFVYNTLMD 294 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~ll~ 294 (598)
+...|++++|.+.+++.... +..+ ....+..+...+...|++++|...+++..... ..+. ..++..+..
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 77888888888877776543 1011 12345566667777777777777777665421 0111 123445555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047932 295 GFCLTGRVNHAKELFVSME 313 (598)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~ 313 (598)
++...|++++|...+++..
T Consensus 156 ~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHH
Confidence 6666666666666665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=0.00012 Score=67.81 Aligned_cols=190 Identities=11% Similarity=0.019 Sum_probs=134.6
Q ss_pred HHhcCChh-HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHHH
Q 047932 150 LCRTGHTI-VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF----------VDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 150 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
..+.|.+. +|+.+++.+...+ |.+..+|+.--..+...+. +++++.+++.+...+.+ +..+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~a 110 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGT 110 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHH
Confidence 34567665 7999999999977 4556677665555444433 67888999988886544 7888
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q 047932 219 YNSLIHCFSHAD--DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGK-MEEASRLLDLMIQIGVHPNTFVYNTLMDG 295 (598)
Q Consensus 219 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (598)
|+.-..++...+ ++++++.+++++.+.. +.|...|+....++...|. ++++++.++.+++..+ .|...|+.....
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 888888887777 4899999999999874 4478888888888888888 5899999999988753 377777766665
Q ss_pred HHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHccC
Q 047932 296 FCLT--------------GRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT-----------KNVEEALNLYRKMLPK 350 (598)
Q Consensus 296 ~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~ 350 (598)
+... +.++++++.+....... |.|...|+-+-..+.+. +.++++++.+.++.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 5554 34667777777777654 45667776555444443 2345555555555554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=82.76 Aligned_cols=130 Identities=13% Similarity=-0.062 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD--------------IISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
..+..+...+.+.|++++|+..|++++....... ..+|..+..+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444555555555555555555555554321111 4566777777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc-chhHHHHHHH
Q 047932 458 LPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKS-SRGKLMSQMS 525 (598)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 525 (598)
+.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++| .. .++.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~--~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKK--LYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 2256667777777777777777777777777654 44566677777777777777666 33 555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.4e-07 Score=73.84 Aligned_cols=108 Identities=13% Similarity=-0.003 Sum_probs=60.4
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHh
Q 047932 62 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVF 141 (598)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~ 141 (598)
|+.++..+|. +...+..++..+.+.|++++|+..|++++... +.+..
T Consensus 7 l~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------------------------------p~~~~ 53 (142)
T 2xcb_A 7 LAMLRGLSED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------------------------------HYDAR 53 (142)
T ss_dssp --CCTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------TTCHH
T ss_pred HHHHHcCCHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------------------------------CccHH
Confidence 3444444433 45555556666666666666666666555431 12444
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
.|..+..+|.+.|++++|+..|++....+ +.+...+..+..+|...|++++|.+.|+....
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYGALMD-------INEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55556666666666666666666666554 34455556666666666666666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=74.47 Aligned_cols=122 Identities=8% Similarity=0.136 Sum_probs=84.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhc
Q 047932 151 CRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHC-FSHA 229 (598)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 229 (598)
...|++++|...++...... +.+...|..+...|...|++++|...|+++..... .+...+..+..+ +...
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQA 92 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 45677778888888777764 45667777788888888888888888887776532 256667777777 6677
Q ss_pred CCH--HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 230 DDW--NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 230 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
|++ ++|...++++++.. +.+...+..+..++...|++++|...++.+.+..
T Consensus 93 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777 78888887777653 3345666677777777888888888877777653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-06 Score=67.55 Aligned_cols=107 Identities=9% Similarity=-0.001 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL--LPN----VVTYNI 466 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 466 (598)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556667777777777777777776654 33566677777777777777777777777655211 111 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047932 467 MIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTI 502 (598)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 502 (598)
+..++...|++++|++.|++.+.. .|++.....+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 667777777777777777777653 4565554433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=7.6e-06 Score=63.55 Aligned_cols=109 Identities=11% Similarity=-0.010 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGL 471 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 471 (598)
..+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445556666667777777777777766543 3356666777777777777777777777776642 22456666677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 472 CNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
...|++++|.+.+++..+.+ +.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 77777777777777777643 33444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.1e-06 Score=67.00 Aligned_cols=98 Identities=10% Similarity=-0.015 Sum_probs=66.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+.+.|++++|+..|++..+.+ +.+...|..+..++.+.|++++|+..+++..+... .+...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHH
Confidence 3455666677777777777777777777654 44566777777777777777777777777766532 255666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 66777777777777777777766654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-06 Score=67.54 Aligned_cols=97 Identities=10% Similarity=0.089 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC---
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI--NPN--- 215 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~--- 215 (598)
.++..++..+.+.|++++|+..|++..+.+ |.+...|..+..+|.+.|++++|++.+++..+.+. .++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 345667777777777777777777777654 44566777777777777777777777776654311 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 216 -VVTYNSLIHCFSHADDWNEAKRLFIKMMD 244 (598)
Q Consensus 216 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (598)
..+|..+..++...|++++|++.|++.+.
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12455555556666666666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-07 Score=80.20 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=104.4
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
..|++++|.+.|+......+. ....+..++..+.+.|++++|+..|++++... |+...+.... ...- .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~---~~~~----~- 83 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQ--SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQI---LLDK----K- 83 (198)
T ss_dssp ------CCCSGGGCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHH---HHHH----H-
T ss_pred hhhhccccCchhhCCHHHHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhh---HHHH----H-
Confidence 455666666666544433332 55678888889999999999999999988752 2211000000 0000 0
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
. .....++..+..+|.+.|++++|+..++++.... +.+...+..+..+|...|++++|.+.|++....
T Consensus 84 -~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 84 -K----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -H----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 0013567788888889999999999999988865 556788888888899999999999999888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 047932 211 NINPNVVTYNSLIHCFSHADDWNEAK-RLFIKMM 243 (598)
Q Consensus 211 ~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 243 (598)
.. .+...+..+..++...++.+++. ..+..+.
T Consensus 152 ~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 152 NP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHHHHHC----------
T ss_pred CC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32 25667777777776666665555 4444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=6e-06 Score=65.31 Aligned_cols=96 Identities=10% Similarity=-0.077 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGL 471 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 471 (598)
..+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555566666666666666666666543 3356666666666667777777777776666642 22355666666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 047932 472 CNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~ 489 (598)
...|++++|+..|++.++
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 667777777777766665
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.9e-06 Score=68.86 Aligned_cols=98 Identities=12% Similarity=0.029 Sum_probs=73.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..+...+.+.|++++|+..|+++...+ +.+...|..+..++.+.|++++|+..|+.....+. .+...+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 89 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFP 89 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHH
Confidence 3455667777788888888888888887765 55677777888888888888888888888777543 356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..+|...|++++|...|+..++.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77788888888888888888877664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=9.7e-06 Score=62.91 Aligned_cols=98 Identities=19% Similarity=0.126 Sum_probs=61.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+...|++++|...|++..... +.+...+..+...+...|++++|...+++...... .+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHH
Confidence 3455566666667777777777777766653 34566666666666666777777776666665422 245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|.+.+++..+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.9e-06 Score=67.55 Aligned_cols=98 Identities=11% Similarity=-0.077 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+...+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45556666666666666666666666666543 3355666666666777777777777777666642 224556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047932 470 GLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~ 489 (598)
++...|++++|+..|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 67777777777777766664
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-06 Score=86.34 Aligned_cols=123 Identities=11% Similarity=0.066 Sum_probs=100.6
Q ss_pred cCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHH
Q 047932 44 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIME 123 (598)
Q Consensus 44 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 123 (598)
..+..+.+.|++++|++.|+++++.+|. +..+|..++.++.+.|++++|+..|+++++..
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------ 70 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD------------------ 70 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------
Confidence 4577788999999999999999999887 89999999999999999999999999998752
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHH--HHhcCCHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDG--VCKEGFVDKAM 201 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~ 201 (598)
+.+..++..+..+|.+.|++++|.+.|+++.+.. +.+...+..+..+ +.+.|++++|+
T Consensus 71 -------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 71 -------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred -------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2356788899999999999999999999999875 3445566666665 88889999999
Q ss_pred HHHHH
Q 047932 202 ELFLQ 206 (598)
Q Consensus 202 ~~~~~ 206 (598)
+.+++
T Consensus 131 ~~~~~ 135 (477)
T 1wao_1 131 AGDEH 135 (477)
T ss_dssp -----
T ss_pred ccccc
Confidence 99883
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-05 Score=70.05 Aligned_cols=129 Identities=13% Similarity=-0.001 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELD---------------IISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
.+..+...+...|++++|...|+++........ ..++..+..+|...|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344455555556666666666665554321100 2567777888888888888888888887752
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc-hhHHHHHHH
Q 047932 458 LPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSS-RGKLMSQMS 525 (598)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 525 (598)
+.+...+..+..++...|++++|+..|++.++.. +.+...+..+..++...|+.+++. . .+..+.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~f 184 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKL--TFGGMF 184 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 2356777778888888888888888888887754 446677777777777777776666 3 444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-05 Score=64.15 Aligned_cols=111 Identities=12% Similarity=-0.082 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD----IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYN 465 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 465 (598)
+...+..+...+...|++++|...|+++.+.. |+ ...+..+..+|...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 45555566666666666666666666666542 33 4566666667777777777777777766542 22455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
.+..++...|++++|...|++.++.. +.+...+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 66677777777777777777776643 334444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.3e-06 Score=68.07 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=71.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++...... .+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHH
Confidence 34566777777777888888888888777764 44667777777777777888888777777776532 25667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
|..+..+|...|++++|...|++.++.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777777777664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.9e-06 Score=67.88 Aligned_cols=99 Identities=10% Similarity=-0.031 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+...+..+...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666777777777777777766553 3356667777777777777777777777776642 224666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 047932 470 GLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~ 490 (598)
++...|++++|+..|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.34 E-value=5.2e-06 Score=65.96 Aligned_cols=113 Identities=10% Similarity=0.025 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL--LPN----VVTYN 465 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 465 (598)
..+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666667777777777777766543 33566667777777777777777777777655321 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
.+..++...|++++|.+.|+++.+. .|+......+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 6777777777777777777777764 346555555544443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.3e-06 Score=63.78 Aligned_cols=97 Identities=9% Similarity=-0.014 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP--NVVT 218 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 218 (598)
..+..++..+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 78 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDV 78 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHH
Confidence 344445555555555555555555555443 3344455555555555555555555555555431 11 3444
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 047932 219 YNSLIHCFSHA-DDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 219 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 245 (598)
+..+..++... |++++|.+.++.....
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 45555555555 5555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=64.79 Aligned_cols=98 Identities=13% Similarity=-0.009 Sum_probs=51.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..+...+...|++++|...|+...... +.+...|..+...+...|++++|...++....... .+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 79 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKA 79 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHH
Confidence 34455555555555555555555555555543 33445555555555555555555555555554321 14445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMD 244 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (598)
+..+..++...|++++|...|++..+
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5e-06 Score=66.06 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC---
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI--NPN--- 215 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~--- 215 (598)
..+..++..+...|++++|...|++..... +.+...+..+...+...|++++|...++.+..... .++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 456667777777777777777777777654 44566677777777777777777777777665421 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 216 -VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 216 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..++..+..++...|++++|.+.|++..+.
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 455666666666667777777776666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.5e-06 Score=65.44 Aligned_cols=90 Identities=7% Similarity=-0.004 Sum_probs=42.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047932 432 LIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNE 511 (598)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 511 (598)
+...+...|++++|+..+++.++.. +.+...|..+..++...|++++|+..|+++++.. +.+...+..+..+|...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3444444555555555555554431 1134444444455555555555555555554432 2334444445555555555
Q ss_pred ccccchhHHHHHHH
Q 047932 512 TSKSSRGKLMSQMS 525 (598)
Q Consensus 512 ~~~A~~~~~~~~~~ 525 (598)
+++|.. .+++++
T Consensus 101 ~~~A~~--~~~~al 112 (121)
T 1hxi_A 101 ANAALA--SLRAWL 112 (121)
T ss_dssp HHHHHH--HHHHHH
T ss_pred HHHHHH--HHHHHH
Confidence 555555 555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-06 Score=83.16 Aligned_cols=151 Identities=9% Similarity=-0.107 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 470 (598)
...+..+...+.+.|++++|...|++++... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4455566666777777788887777776542 22221 112233333332211 1367888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----H-HHH
Q 047932 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----S-IML 545 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~-~~~ 545 (598)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|.. .++++.+. .|+...... + ...
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~--~l~~al~l-----~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARD--DFRKAQKY-----APDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH--HHHHTTC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH-----CCCCHHHHHHHHHHHHHH
Confidence 999999999999999998865 5578889999999999999999999 99999844 565443332 1 233
Q ss_pred hCCCCCChhhHHHhhhcCccccc
Q 047932 546 QKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 546 ~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
.+..+.+...|++++...|+++.
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCCC
Confidence 56778888999999999998864
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-05 Score=78.29 Aligned_cols=55 Identities=16% Similarity=0.039 Sum_probs=45.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCH---------------HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPV---------------SSFNILFGCLAKNKHYDTVLSLFKRLNS 103 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (598)
+.+.|++++|++.|..++...+...+. .++..++..|...|++++|.+.+.++.+
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346899999999999999877653221 2477899999999999999999988764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=6.2e-06 Score=64.66 Aligned_cols=96 Identities=7% Similarity=-0.041 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
.+..+...+.+.|++++|+..|+++.+.+ +.+...|..+..++...|++++|+..|++..+.... +...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 34556666777777777777777777754 456677777777777777777777777777665322 5566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
+..++...|++++|+..+++.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777776653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=9.6e-06 Score=82.24 Aligned_cols=163 Identities=10% Similarity=0.001 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 047932 407 VLEALELFCAIGNSKYELDIISYSCLIDGLCKIGK----------LETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG- 475 (598)
Q Consensus 407 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g- 475 (598)
.++|+..++.++... +-+..+|+.-..++...|+ ++++++.++.+.+... -+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccc
Confidence 345666666666554 2345556555555555555 6777777777766532 25666666666666666
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CccccchhHHHHHHHhcccCCCCCCh-HHHHH---HHHHh---
Q 047932 476 -QMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN-ETSKSSRGKLMSQMSSCWSMCFQPKT-LICSI---SIMLQ--- 546 (598)
Q Consensus 476 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~---~~~~~--- 546 (598)
+++++++.++++.+.. +-|...|+.-..++.+.| .++++++ .++++++. .|+. ..|.. ++...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~--~~~~~I~~-----~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA--FTDSLITR-----NFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH--HHHTTTTT-----TCCCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHH--HHHHHHHH-----CCCCccHHHHHHHHHHhhccc
Confidence 5577777777777665 456677776666666666 6667777 77777644 4433 33333 22211
Q ss_pred -----------CCCCCChhhHHHhhhcCccccchhhHhhhhCCC
Q 047932 547 -----------KDMSPGDTMFSTALLMDPDCSCDLESLIHNTDL 579 (598)
Q Consensus 547 -----------~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~ 579 (598)
+.+++|.+.++++++++|+|..++.-+-|....
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 234667788889999999999987777555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-05 Score=62.18 Aligned_cols=99 Identities=13% Similarity=0.015 Sum_probs=62.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHP--NVVTFSVI 257 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 257 (598)
+...+..+...+...|++++|...|+++.+... .+...+..+..++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 455566666667777777777777776665422 245566666666666777777777776666542 22 34556666
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHhc
Q 047932 258 VDELCKN-GKMEEASRLLDLMIQI 280 (598)
Q Consensus 258 ~~~~~~~-g~~~~a~~~~~~~~~~ 280 (598)
..++... |++++|.+.++.+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666666654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.28 E-value=6e-07 Score=89.05 Aligned_cols=161 Identities=11% Similarity=-0.005 Sum_probs=112.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
..+++++|+..|+......|. ....|..+...+.+.|++++|+..|+++++.. |+...+ ..+... +
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~------~~~~~~----~ 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLE--QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL------SEKESK----A 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC------CHHHHH----H
T ss_pred hhhhcccCcchhhcCHHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC------ChHHHH----H
Confidence 345667788777777666654 67889999999999999999999999998642 221000 000000 0
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.. .....+|..+..+|.+.|++++|+..|++++..+ +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 312 ~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 312 SE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 00 0124567788888888888888888888888865 556778888888888888888888888888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047932 211 NINPNVVTYNSLIHCFSHADDWNEAKR 237 (598)
Q Consensus 211 ~~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (598)
.. .+...+..+..++...++.+++.+
T Consensus 381 ~P-~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 381 NP-QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp C-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 255677777777777777766653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-06 Score=71.26 Aligned_cols=107 Identities=6% Similarity=-0.137 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------CH-----HHHHHHHHHHHhcCCccccchhHHHHHHHhc--cc
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP-------DC-----VIFNTIMLGFIRNNETSKSSRGKLMSQMSSC--WS 529 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~ 529 (598)
+......+...|++++|+..|++.++.. +. +. ..|..+..++.+.|++++|+. .+++.++. ..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~--~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH--SADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHhhhcc
Confidence 4445555556666666666666666532 11 22 378888888888888888888 88888732 00
Q ss_pred CCCCCChHHHH----H----HHHHhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 530 MCFQPKTLICS----I----SIMLQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 530 ~~~~p~~~~~~----~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
-.+.|+....+ . .+...|++++|+..|+++++++|++..++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 01178765444 2 66778999999999999999999999987665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.1e-05 Score=74.28 Aligned_cols=197 Identities=10% Similarity=-0.017 Sum_probs=95.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCcCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 047932 258 VDELCKNGKMEEASRLLDLMIQIGVHPNT----------------FVYNTLMDGFCLTGRVNHAKELFVSMESNGC-MHD 320 (598)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 320 (598)
.+.+.+.|++++|++.|..+++....... ..+..+...|...|++++|.+.+..+..... ..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45566777888888887777765322110 1245556666666666666666665543210 011
Q ss_pred h----hhHHHHHHHHHhcCCHHHHHHHHHHHccC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-
Q 047932 321 V----VSYTTLINGYCKTKNVEEALNLYRKMLPK----GIRP-TVVTYSTLFLGLFEVHQVEHALKLFDEMQHN----D- 386 (598)
Q Consensus 321 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~- 386 (598)
. ...+.+...+...|++++|..++...... +..+ -..++..+...+...|++++|..+++++... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11122222333455566666666554321 1111 1334455555556666666666665554432 1
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 387 VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS----KYELD--IISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
.+....++..++..|...|++++|..++++.... ..++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0111334555555555566666666555554321 10111 12334444444555555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.8e-05 Score=63.26 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=59.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD----TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP 214 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 214 (598)
+...+..+...+...|++++|...|++..+.. |+ ...|..+...|...|++++|+..++...... +.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-cc
Confidence 44556666666666777777777777666643 33 4556666666666666666666666665542 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 215 NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
+...+..+..++...|++++|...|++..+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4555566666666666666666666666554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.2e-06 Score=65.23 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047932 404 NGFVLEALELFCAIGNSK--YELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAH 481 (598)
Q Consensus 404 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 481 (598)
.|++++|+..|+++++.+ -+.+...+..+..+|...|++++|+..+++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666667776666542 12234566667777777777777777777776642 224556666677777777777777
Q ss_pred HHHHHHHHC
Q 047932 482 DLFLDMEAK 490 (598)
Q Consensus 482 ~~~~~~~~~ 490 (598)
..+++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.5e-05 Score=79.19 Aligned_cols=186 Identities=10% Similarity=-0.027 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 047932 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGF----------VLEALELFCAIGNSKYELDIISYSCLIDGLCKIG 440 (598)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 440 (598)
..++|.+.++++...+ +-+..+|+.-..++...|+ +++++.+++.+.+.. +.+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456778888877764 4456667666666666666 889999999998766 448888988888888888
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 047932 441 --KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG-QMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRN-------- 509 (598)
Q Consensus 441 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 509 (598)
+++++++.++++.+...+ +..+|+.-...+.+.| .++++++.++++++.. +-|...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999987533 7888888888888888 8999999999998875 55788888887777663
Q ss_pred ------CCccccchhHHHHHHHhcccCCCCCCh-HHHHH---HHHHhCCCCC------------ChhhHHHhhhcCcccc
Q 047932 510 ------NETSKSSRGKLMSQMSSCWSMCFQPKT-LICSI---SIMLQKDMSP------------GDTMFSTALLMDPDCS 567 (598)
Q Consensus 510 ------g~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~---~~~~~~~~~~------------a~~~~~~~l~~~P~~~ 567 (598)
+.++++++ .+++++.. .|+. ..|.. ++...+..++ |+..|.++++++|+.+
T Consensus 200 ~~~~~~~~~~eel~--~~~~ai~~-----~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~ 272 (567)
T 1dce_A 200 QGRLPENVLLKELE--LVQNAFFT-----DPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMG 272 (567)
T ss_dssp CCSSCHHHHHHHHH--HHHHHHHH-----CSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTTB
T ss_pred cccccHHHHHHHHH--HHHHHHhh-----CCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccccc
Confidence 45678888 89888855 5654 44444 2222233333 5566899999999863
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=66.33 Aligned_cols=66 Identities=15% Similarity=0.055 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (598)
+..+|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++...|++++|+..|++.++..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 34577888888888888888888888888753 2357788888888888899999999888888753
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.7e-05 Score=59.73 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---H
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT---VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN---V 216 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~ 216 (598)
+..+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+.+...... + .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-------PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccH
Confidence 3445666777777777777777777654 2223 46666777777777777777777777664322 2 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 217 VTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..+..++...|++++|...|+.+.+.
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666677777777777777777777665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-05 Score=78.93 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG 505 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 505 (598)
..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566677777777777777777777776643 2246667777777777777777777777777653 3345566666667
Q ss_pred HHhcCCccccchhHHHHHHH
Q 047932 506 FIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~ 525 (598)
+.+.|+.+++.+ ..++.|.
T Consensus 395 ~~~~~~~~~a~~-~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDR-RIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHH-HHHHHC-
T ss_pred HHHHHHHHHHHH-HHHHHHH
Confidence 777776665553 1444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.1e-05 Score=58.83 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=55.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 047932 397 FIDGLCKNGFVLEALELFCAIGNSKYELDI---ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN---VVTYNIMIHG 470 (598)
Q Consensus 397 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 470 (598)
+...+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...++++.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 44455666666666666666665321 122 35556666666777777777777766654211 2 4455666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 047932 471 LCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~ 490 (598)
+...|++++|+..|+++++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66777777777777776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.5e-06 Score=81.50 Aligned_cols=118 Identities=8% Similarity=-0.089 Sum_probs=70.6
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047932 400 GLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDK 479 (598)
Q Consensus 400 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 479 (598)
.+.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3445666777777776666543 3356666777777777777777777777776642 2245666666777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCccccchhHHHH
Q 047932 480 AHDLFLDMEAKGVEPDCVIFNTIMLG--FIRNNETSKSSRGKLMS 522 (598)
Q Consensus 480 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~ 522 (598)
|++.|+++++.. +.+...+..+..+ +.+.|++++|++ .++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~--~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA--GDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhc--ccc
Confidence 777777776643 2233444444444 666677777777 666
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.7e-06 Score=65.55 Aligned_cols=87 Identities=9% Similarity=-0.022 Sum_probs=71.2
Q ss_pred cCCChHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMH---PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
..|++++|+..|+++++.+ |. ++.+|..++.++.+.|++++|+..|+++++.. |
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p------------------- 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--P------------------- 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------------------
Confidence 4688999999999999874 54 77889999999999999999999999988652 2
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
.+..++..+..++.+.|++++|+..|++.....
T Consensus 59 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 59 ----------NHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp ----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ----------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 256778889999999999999999999998864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-05 Score=64.97 Aligned_cols=96 Identities=11% Similarity=-0.068 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSK----YEL-DIISYSCLIDGLCKIGKLETAWELFQSLSRV----GLLP-NVV 462 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 462 (598)
++..+...+...|++++|...+++..... ..+ ...++..+..++...|++++|...+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444445555555555555555443210 000 1234445555555555666655555554431 1000 022
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
.+..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34445555555566666666655554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.7e-05 Score=74.57 Aligned_cols=91 Identities=9% Similarity=-0.024 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
+..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777888888888888888888887753 2256677778888888888888888888887754 446667777777
Q ss_pred HHHhcCCccccch
Q 047932 505 GFIRNNETSKSSR 517 (598)
Q Consensus 505 ~~~~~g~~~~A~~ 517 (598)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.6e-05 Score=64.50 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=76.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----
Q 047932 181 TVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN-PN----VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH-PN---- 250 (598)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 250 (598)
..++..+...+...|++++|...+++....... ++ ..++..+...+...|++++|.+.+++..+.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456677778888888888888888777653110 11 135666777777777777777777776542100 01
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 251 VVTFSVIVDELCKNGKMEEASRLLDLMIQIG----VH-PNTFVYNTLMDGFCLTGRVNHAKELFVSME 313 (598)
Q Consensus 251 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 313 (598)
...+..+..++...|++++|...+++..+.. .. .....+..+...+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2345556666667777777777666655421 00 012234444455555555555555555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.7e-05 Score=62.70 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=62.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccc-----------cCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-----------CKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
...+...+..+.+.|++++|+..|.+....-...... .+.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4567888999999999999999999988741000000 01123455555556666666666666666555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
... +.+...|..+..+|...|++++|...|++.+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 542 224555555555566666666666666555554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.04 E-value=4.9e-05 Score=72.71 Aligned_cols=104 Identities=9% Similarity=-0.030 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---------cccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG---------VVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDEN 211 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 211 (598)
..+..+...+.+.|++++|+..|+++.+...... ...+.+...|..+..+|.+.|++++|++.++++.+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3577888999999999999999999886210000 0001223444445555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 212 INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
. .+...|..+..+|...|++++|+..|++.++.
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1 13444444444555555555555555544443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-05 Score=79.11 Aligned_cols=138 Identities=9% Similarity=-0.040 Sum_probs=97.8
Q ss_pred cccCCChHHHHHHHHHHHHc-----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHH
Q 047932 49 DINLITPNEALCIFDYMLRM-----HPSPP-PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIM 122 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 122 (598)
+..+|++++|..++++++.. ++.+| -..+++.++..|..+|++++|..++++++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------------- 379 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD------------------- 379 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------
Confidence 34689999999999998853 33322 345688999999999999999999998763
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCccccCCCHhHHHHHHHHHHhcCCHHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG-EFGVVCKPDTVTYNTIIDGVCKEGFVDKAM 201 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 201 (598)
++++....+.+....+++.|...|...|++++|..++++...... .+|...+....+.+.+...+...+.+++|+
T Consensus 380 ----i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 380 ----GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp ----HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222222345799999999999999999999998775320 111112222345566777777888888888
Q ss_pred HHHHHHhh
Q 047932 202 ELFLQMKD 209 (598)
Q Consensus 202 ~~~~~~~~ 209 (598)
.+|..+.+
T Consensus 456 ~~~~~~~~ 463 (490)
T 3n71_A 456 FMYHKMRE 463 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00013 Score=58.86 Aligned_cols=96 Identities=13% Similarity=-0.038 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGNSKYEL------D-----IISYSCLIDGLCKIGKLETAWELFQSLSRV-----GL 457 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~ 457 (598)
+......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666666666666666666432110 2 227777777788888888888888777763 11
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 458 LPN-VVTY----NIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 458 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.|+ ...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 454 4566 7777888888888888888888765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.7e-05 Score=59.68 Aligned_cols=97 Identities=12% Similarity=0.021 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHH
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD------CVI 498 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~ 498 (598)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.++++++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 45667778888888999999999999888753 3357788888889999999999999999988753 333 667
Q ss_pred HHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 499 FNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
+..+..++...|+.++|.+ .++++.
T Consensus 81 ~~~~~~~~~~~~~~~~a~~--~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV--EVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS--SSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHh--HHHHhH
Confidence 7777888888888888888 666553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.7e-05 Score=75.11 Aligned_cols=149 Identities=13% Similarity=0.011 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047932 356 VVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDG 435 (598)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (598)
...+..+...+...|++++|...|.+++.. .|+... +...|+..++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455677778888999999999999998875 333321 222333444333221 1367788889
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCccc
Q 047932 436 LCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG-FIRNNETSK 514 (598)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 514 (598)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..+ ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988753 2367788889999999999999999999887653 3344555555555 334566777
Q ss_pred cchhHHHHHHHhc
Q 047932 515 SSRGKLMSQMSSC 527 (598)
Q Consensus 515 A~~~~~~~~~~~~ 527 (598)
+.+ .+++|...
T Consensus 318 a~~--~~~~~l~~ 328 (338)
T 2if4_A 318 QKE--MYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHH--HHHHhhCC
Confidence 888 88888744
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0005 Score=55.03 Aligned_cols=110 Identities=8% Similarity=-0.079 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 047932 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK----IGKLETAW 446 (598)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 446 (598)
++++|..+|++..+.+ .++.. +...|...+..++|..+|++..+.+ +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 4455555556666666666666554 55566666666666 56677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047932 447 ELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 491 (598)
..|++..+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777766643 45556666666666 667777777777776665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=5.4e-05 Score=61.02 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=83.8
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFT 129 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~ 129 (598)
.+.+.+++|++.|+.+++.+|. ++..|..+..++...++++.+....+ .+++|+..|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~--------------------~~~eAi~~le 70 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQ--------------------MIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHH--------------------HHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHh--------------------HHHHHHHHHH
Confidence 3456689999999999999997 99999999999999888765544332 1356777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcC-----------ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHH
Q 047932 130 KLRVFGCEPDVFTYNTLINGLCRTG-----------HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIID 189 (598)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 189 (598)
+.++.++ .+..+|..+..+|...| ++++|++.|+++++.+ |+...|...+.
T Consensus 71 ~AL~ldP-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--------P~~~~y~~al~ 132 (158)
T 1zu2_A 71 EALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred HHHHhCc-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence 7777653 26778999999998874 8999999999999954 66555544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.4e-05 Score=57.44 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcC
Q 047932 56 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFG 135 (598)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~ 135 (598)
++|+..|+++++.+|. ++..|..++..+...|++++|+..|++++...
T Consensus 2 ~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------------ 49 (115)
T 2kat_A 2 QAITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD------------------------------ 49 (115)
T ss_dssp CCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------
T ss_pred hHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------------------------------
Confidence 3588899999998886 89999999999999999999999999988642
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 136 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
+.+...|..+..+|...|++++|...|++.....
T Consensus 50 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 50 -PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2356678889999999999999999999987743
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00082 Score=53.74 Aligned_cols=88 Identities=8% Similarity=0.001 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSH----ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELC 262 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (598)
|...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3444444444444555555544432 34444444444444 445555555555544432 3334444444444
Q ss_pred h----CCCHHHHHHHHHHHHhc
Q 047932 263 K----NGKMEEASRLLDLMIQI 280 (598)
Q Consensus 263 ~----~g~~~~a~~~~~~~~~~ 280 (598)
. .+++++|.+++++..+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 4 44444444444444444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=9.7e-05 Score=56.48 Aligned_cols=93 Identities=8% Similarity=-0.018 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCCh---
Q 047932 460 NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKT--- 536 (598)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--- 536 (598)
+...+..+...+...|++++|++.|++.++.. +.+...+..+..+|...|++++|.+ .++++++. .|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~-----~p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQ--MCQQGLRY-----TSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH--HHHHHHTS-----CSSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHH--HHHHHHHh-----CCCccHH
Confidence 45678888999999999999999999999875 5678899999999999999999999 99999955 5664
Q ss_pred ---H-HHHH---HHHHhCCCCCChhhHHHhh
Q 047932 537 ---L-ICSI---SIMLQKDMSPGDTMFSTAL 560 (598)
Q Consensus 537 ---~-~~~~---~~~~~~~~~~a~~~~~~~l 560 (598)
. .+.. .....|+.+.|...++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 1 1111 4455678888888777643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=72.57 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHhcCCHHHHHHHHHHHhhC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HhhHHH
Q 047932 191 VCKEGFVDKAMELFLQMKDE-----NI-NP-NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ-----GV-HPN-VVTFSV 256 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ 256 (598)
+..+|++++|+.++++..+. |. .| ...+++.|..+|...|++++|+.++++.+.. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45677777777777666542 11 11 2346677777777777777777777765532 11 122 235666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-----CC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 257 IVDELCKNGKMEEASRLLDLMIQI-----GV-HPN-TFVYNTLMDGFCLTGRVNHAKELFVSMES 314 (598)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 314 (598)
|...|...|++++|+.++++.+.. |. .|+ ..+...+..++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777766666542 21 111 22334444555555566666666655543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00036 Score=50.87 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=44.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++...... .+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHH
Confidence 3445555666666666666666666665543 33455556666666666666666666666555321 234444
Q ss_pred HHHHHHHH
Q 047932 220 NSLIHCFS 227 (598)
Q Consensus 220 ~~l~~~~~ 227 (598)
..+..++.
T Consensus 81 ~~l~~~~~ 88 (91)
T 1na3_A 81 QNLGNAKQ 88 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00052 Score=49.96 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG 505 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 505 (598)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666665542 2245556666666666666666666666666543 3345555555555
Q ss_pred HHhc
Q 047932 506 FIRN 509 (598)
Q Consensus 506 ~~~~ 509 (598)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00048 Score=53.02 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047932 158 VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKR 237 (598)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (598)
.|+..|+++.+.+ +.+...+..+...|...|++++|+..|++...... .+...|..+..+|...|++++|..
T Consensus 3 ~a~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666654 44566666677777777777777777776665432 245566666666666677777766
Q ss_pred HHHHHHH
Q 047932 238 LFIKMMD 244 (598)
Q Consensus 238 ~~~~~~~ 244 (598)
.|++..+
T Consensus 75 ~~~~al~ 81 (115)
T 2kat_A 75 AWESGLA 81 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00018 Score=57.91 Aligned_cols=99 Identities=10% Similarity=0.029 Sum_probs=75.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCCCCCHHHH
Q 047932 150 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV----------DKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
..+.+++++|++.++...+.+ |.+...|..+..++...+++ ++|+..|++..+.+.. +..+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~ 83 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHH
Confidence 346678899999999999986 67899999999999988775 4888888888876433 66788
Q ss_pred HHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 047932 220 NSLIHCFSHAD-----------DWNEAKRLFIKMMDQGVHPNVVTFSVIV 258 (598)
Q Consensus 220 ~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (598)
..+..+|...| ++++|++.|++.++. .|+...|...+
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888887764 777888888777774 45554444333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.46 E-value=5.6e-05 Score=56.53 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHh
Q 047932 468 IHGLCNDGQMDKAHDLFLDMEAKGVEPDCV-IFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQ 546 (598)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 546 (598)
+..+...|++++|++.|+++++.. +.+.. .+..+..+|...|++++|.+ .++++++. .|+...... .
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~--~~~~al~~-----~p~~~~~~~----~ 74 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALN--NYQSAIEL-----NPDSPALQA----R 74 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHH-----CTTSTHHHH----H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhc-----CCCcHHHHH----H
Confidence 344555566666666666665543 33445 55566666666666666666 66666543 344332211 1
Q ss_pred CCCCCChhhHHHhhhcCccccc
Q 047932 547 KDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 547 ~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
+.+.++...+++++..+|+++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 3334445556666666665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0009 Score=49.91 Aligned_cols=64 Identities=20% Similarity=0.100 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
+...+..+..+|...|++++|+..|+++.+... .+...|..+..+|...|++++|++.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666666655421 1344556666666666666666666666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0012 Score=49.27 Aligned_cols=65 Identities=23% Similarity=0.218 Sum_probs=54.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
.+...+..+...|.+.|++++|+..|+++.+.+ +.+...|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356778888889999999999999999988875 45677888888899999999999988888765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00096 Score=64.71 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=72.8
Q ss_pred cCCChHHHHHHHHHHHHc-----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHH
Q 047932 51 NLITPNEALCIFDYMLRM-----HPSPP-PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEA 124 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a 124 (598)
+.|++++|..++++++.. ++.+| -..+++.++..|..+|++++|..++++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 468999999999998863 33322 235688999999999999999999998764
Q ss_pred HHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 125 AALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEMAN 168 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (598)
++++....+ .|+ ..+++.|...|...|++++|+.++++..+
T Consensus 369 --i~~~~lG~~-Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 --PYSKHYPVY-SLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp --HHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHcCCC-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333333222 333 45699999999999999999999998875
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.018 Score=53.58 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047932 423 ELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFN 500 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 500 (598)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 3456666666666666677777777777766643 56555656666666677777777777666654 35555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0018 Score=47.24 Aligned_cols=49 Identities=8% Similarity=0.190 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG 105 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (598)
.++|..+|++++..+|. ++.+...+...+.+.|++++|+..|++++...
T Consensus 25 ~~~A~~~l~~AL~~dp~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY--NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 69999999999999997 99999999999999999999999999999874
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.025 Score=52.53 Aligned_cols=135 Identities=9% Similarity=-0.038 Sum_probs=73.9
Q ss_pred CCCHhhHHHHHHHHH--hcC---ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh---cC-C----HHHHHHH
Q 047932 137 EPDVFTYNTLINGLC--RTG---HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK---EG-F----VDKAMEL 203 (598)
Q Consensus 137 ~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g-~----~~~A~~~ 203 (598)
+.+..+|...+.+.. ..+ +..+|+.+|+++.+.+ |.....|..+..+|.- .+ . .......
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-------P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-------PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 456677777765543 333 3478999999999876 3335555554444431 00 0 0011111
Q ss_pred HHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 204 FLQMKD-ENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 204 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
++.... ...+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|...+++....
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 111111 0123355556555555555666666666666666653 45555555566666666666666666666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.023 Score=50.57 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCccccCC-CHhHHHHHHHH
Q 047932 120 RIMEAAALFTKLRVFGCEPD---VFTYNTLINGLCRT-----GHTIVALNLFEEMANGNGEFGVVCKP-DTVTYNTIIDG 190 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~ 190 (598)
....|...+++..+.+ |+ ...|..++..|.+. |+.++|.+.|++.++.+ +. +..++......
T Consensus 178 ~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-------P~~~id~~v~YA~~ 248 (301)
T 3u64_A 178 TVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-------SAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-------CTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-------CCCCchHHHHHHHH
Confidence 4455556666665552 33 34566666666663 66666666666666643 11 25555555666
Q ss_pred HHhc-CCHHHHHHHHHHHhhCCCC
Q 047932 191 VCKE-GFVDKAMELFLQMKDENIN 213 (598)
Q Consensus 191 ~~~~-g~~~~A~~~~~~~~~~~~~ 213 (598)
+++. |+.+++.+.+++.......
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCC
Confidence 6553 6666666666666655433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0033 Score=46.55 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=40.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 146 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTV-TYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+..+.+.|++++|+..|+++.+.. +.+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4555667777777777777777654 44556 6777777777777777777777777665
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0086 Score=58.15 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=68.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC-CccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CC-CHH
Q 047932 146 LINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-----NI-NP-NVV 217 (598)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~ 217 (598)
.+..+.+.|++++|+.++++.+..... +|...+.-..+++.+...|...|++++|+.+++++... |. .| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355567889999999999998875422 22222223467888888999999999999888877642 21 12 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMD 244 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (598)
+++.|...|...|++++|+.++++.++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677777778888888888777776653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.17 Score=54.09 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=67.8
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 047932 226 FSHADDWNEAKR-LFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNH 304 (598)
Q Consensus 226 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 304 (598)
....+++++|.+ ++..+ + +......++..+.+.|..+.|+++.+. .. .-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHH
Confidence 345667777665 43111 1 012225566666777777776655421 11 11233455677777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 305 AKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...++-+...
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 77765433 2556777777777777777777777776643 2233333444555555444433333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0035 Score=60.77 Aligned_cols=91 Identities=8% Similarity=-0.061 Sum_probs=53.5
Q ss_pred cCChhHHHHHHHHHHhcCC-CCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCC-HHHHHHHHH
Q 047932 153 TGHTIVALNLFEEMANGNG-EFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-----NI-NPN-VVTYNSLIH 224 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~ 224 (598)
.|++++|+.++++.+.... .+|...+.-..+++.|...|...|++++|+.++++.... |. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677888888877665321 122111222456777777777777777777777766532 21 111 235666666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047932 225 CFSHADDWNEAKRLFIKMM 243 (598)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~ 243 (598)
.|...|++++|+.++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.014 Score=56.65 Aligned_cols=92 Identities=17% Similarity=0.008 Sum_probs=64.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCC-CCC-HHH
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSK---YELD----IISYSCLIDGLCKIGKLETAWELFQSLSR-----VGL-LPN-VVT 463 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~ 463 (598)
+..+.+.|++++|+.++++.+... +.++ ..+++.++.+|...|++++|+.++++++. .|. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888776421 1122 34678888888888888888888887764 221 122 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888888889999998888888764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.48 Score=42.20 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHhcCCCCccccCCC---HhHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 156 TIVALNLFEEMANGNGEFGVVCKPD---TVTYNTIIDGVCK-----EGFVDKAMELFLQMKDENINPNVVTYNSLIHCFS 227 (598)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (598)
...|...+++..+.+ |+ ...|..+...|.+ -|+.++|.+.|++..+.+..-+..++......++
T Consensus 179 l~~A~a~lerAleLD--------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 179 VHAAVMMLERACDLW--------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC--------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 467888888888865 44 6689999999998 4999999999999998644334788888888888
Q ss_pred hc-CCHHHHHHHHHHHHHCCCC--CCHhhHH
Q 047932 228 HA-DDWNEAKRLFIKMMDQGVH--PNVVTFS 255 (598)
Q Consensus 228 ~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~ 255 (598)
.. |+.+.+.+.+++.+..... |+....+
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 84 9999999999999987555 5544443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.029 Score=40.75 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=35.8
Q ss_pred CHhhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 139 DVFTYNTLINGLCRTGH---TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
+...+..+..++...++ .++|..++++.++.+ +.+......+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 456666666665554 344555555556666666666666666665554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.027 Score=44.78 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISYSCLIDGLCKIG---KLETAWELFQSLSRVGLLP--NVVTYNIMIHGLCNDGQMDKAHD 482 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 482 (598)
..+.+-|.+....+ .++..+...+..++++.+ ++++++.+++...+.+ .| +...+..+.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34455555555444 356667677777777766 4557777777776643 23 23445556666677777777777
Q ss_pred HHHHHHHC
Q 047932 483 LFLDMEAK 490 (598)
Q Consensus 483 ~~~~~~~~ 490 (598)
+++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.043 Score=43.64 Aligned_cols=91 Identities=18% Similarity=0.101 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCccccc
Q 047932 442 LETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG---QMDKAHDLFLDMEAKGVEP--DCVIFNTIMLGFIRNNETSKSS 516 (598)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 516 (598)
...+.+-|.+..+.|. ++..+...+..++++.+ ++++++.++++..+.. .| +...+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455666666655543 57777777888888877 6668888888887754 34 3566667777788888888888
Q ss_pred hhHHHHHHHhcccCCCCCChHHHHH
Q 047932 517 RGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 517 ~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
+ +++.+++. .|+......
T Consensus 92 ~--y~~~lL~i-----eP~n~QA~~ 109 (152)
T 1pc2_A 92 K--YVRGLLQT-----EPQNNQAKE 109 (152)
T ss_dssp H--HHHHHHHH-----CTTCHHHHH
T ss_pred H--HHHHHHhc-----CCCCHHHHH
Confidence 8 88888854 676544433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.51 Score=50.30 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=58.9
Q ss_pred HHHhCCCHHHHHH-HHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 047932 260 ELCKNGKMEEASR-LLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVE 338 (598)
Q Consensus 260 ~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 338 (598)
.....+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+... .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3445677777765 44211 112223566666777777777776552111 1123345667777
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 339 EALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 339 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 777775433 256677777777777777777777776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.56 Score=38.30 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=50.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
....|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 345566666666555441 455566666666666666666666655442 12233334445555555
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047932 376 LKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCA 416 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 416 (598)
.++-+.....| -++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54444444333 122223334445666666655543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.12 Score=38.47 Aligned_cols=64 Identities=9% Similarity=-0.116 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSK------YELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
...+..+...+...|++..|..+|+.+.+.. ..+...++..+..++.+.|+++.|+..++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555556666666666665554310 012334445555555555555555555555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.11 Score=40.67 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH-hHHHHHh---------c--cHHHHHHHHHHHHHc
Q 047932 73 PPVSSFNILFGCLAKNKHY------DTVLSLFKRLNSTGLFPDLY-THSILIN---------C--RIMEAAALFTKLRVF 134 (598)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~ll~---------~--~~~~a~~~~~~~~~~ 134 (598)
.|+++|-..+..+-+.|++ ++.+++|+++... +.|+.. .+...+. . +.++|+++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4889999999999888999 8999999998875 344321 1111111 1 888999999999775
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 135 GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
+ +.=...|......-.++|++..|.+++......+
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 2 3336778888888889999999999999998865
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.065 Score=39.89 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 427 ISYSCLIDGLCKIGKLETAWELFQSLSRVG------LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
.-...+...+...|++..|...|+...+.- -.+....+..+..++.+.|+++.|+.+++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334455555666666666666665554420 1123445555666666666666666666666553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.15 Score=40.01 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=44.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 438 KIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
..+++++|.++|+.+.+.+-.- ...|......-.++|+...|.+++.+.+..+ +.+...+...+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~ 136 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALR 136 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHH
Confidence 3478888888888886642222 6677777777778888888888888888766 334444444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.84 Score=37.25 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=64.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHH
Q 047932 189 DGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKME 268 (598)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 268 (598)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445677888887777665 2667788888888888888888877766532 334555566667776
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 269 EASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSM 312 (598)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 312 (598)
...++-+.....| -++....++.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 6665555554443 1233344455667777777776543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.88 Score=34.87 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 396 TFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 396 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
..++.+...|.-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|+
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3334444444444444444443321 134444444455555555555555555555444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.96 Score=34.65 Aligned_cols=140 Identities=11% Similarity=0.035 Sum_probs=75.2
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047932 262 CKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEAL 341 (598)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 341 (598)
.-.|.+++..++..+..... +..-+|=++--....-+-+-..++++.+-+. .|. ...|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 34566666666666655532 3333333333333344444444444444322 121 1233333333
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 047932 342 NLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK 421 (598)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 421 (598)
..+-.+-. +...+...+..+...|..++..+++..+... .+|++.....+..+|.+.|+..+|.+++.++.+.|
T Consensus 82 ~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333221 3333455566666777777777777776543 36677777777777888888877777777777766
Q ss_pred CC
Q 047932 422 YE 423 (598)
Q Consensus 422 ~~ 423 (598)
.+
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 43
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.25 Score=37.72 Aligned_cols=84 Identities=11% Similarity=-0.052 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 047932 405 GFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLET---AWELFQSLSRVGLLP--NVVTYNIMIHGLCNDGQMDK 479 (598)
Q Consensus 405 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 479 (598)
.....+.+-|......+ .++..+-..+..++++..+... ++.+++.+...+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445555555554444 3566777777777777776555 777777776643 12 23334455667778888888
Q ss_pred HHHHHHHHHHC
Q 047932 480 AHDLFLDMEAK 490 (598)
Q Consensus 480 A~~~~~~~~~~ 490 (598)
|.++++.+++.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888774
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.39 Score=36.61 Aligned_cols=89 Identities=18% Similarity=0.093 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcccc
Q 047932 441 KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDK---AHDLFLDMEAKGVEP--DCVIFNTIMLGFIRNNETSKS 515 (598)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 515 (598)
....+.+-|.+....|. ++..+-..+..++++..+... ++.+++.....+ .| .......+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555544433 566666667777777665554 777777766643 23 334455566677777777777
Q ss_pred chhHHHHHHHhcccCCCCCChHH
Q 047932 516 SRGKLMSQMSSCWSMCFQPKTLI 538 (598)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~p~~~~ 538 (598)
.+ .++.+++. .|+...
T Consensus 94 ~~--~~~~lL~~-----eP~n~Q 109 (126)
T 1nzn_A 94 LK--YVRGLLQT-----EPQNNQ 109 (126)
T ss_dssp HH--HHHHHHHH-----CTTCHH
T ss_pred HH--HHHHHHHh-----CCCCHH
Confidence 77 77777744 565543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.002 Score=61.21 Aligned_cols=257 Identities=11% Similarity=0.126 Sum_probs=142.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAA 125 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~ 125 (598)
..+++++|.++-++. ..+..|..++.+..+.+...+|++.|-+.. |+..|..++.. .+++-+
T Consensus 37 ~i~~ldRa~eyA~~~-------n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv 103 (624)
T 3lvg_A 37 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELV 103 (624)
T ss_dssp GGCCSTTTTTSSSSC-------CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHH
T ss_pred hccccHHHHHHHHHh-------CCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHH
Confidence 345566666554433 244566667766666666666665553322 12222222222 344444
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
+.+.-..+. ..+..+=+.|+-+|.+.|+..+-.++ +. .||..-...+.+-|...|.++.|.-+|.
T Consensus 104 ~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEef----l~---------~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 104 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEF----IN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp HHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTST----TS---------CCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred HHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHH----Hc---------CCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 444433332 22444446777778887776543322 11 3555555667777777777777766665
Q ss_pred HHhhCC--------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCC
Q 047932 206 QMKDEN--------------------INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNG 265 (598)
Q Consensus 206 ~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 265 (598)
.+.... -..++.||-.+-.+|...+++.-|.-.--.++-. ++ -...++..|-..|
T Consensus 169 ~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G 243 (624)
T 3lvg_A 169 NVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRG 243 (624)
T ss_dssp GSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTC
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCC
Confidence 442110 0125667777777777777776665544444321 12 2234566677788
Q ss_pred CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------CChhhHHHHHHHHHhcCCHH
Q 047932 266 KMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN-GCM------HDVVSYTTLINGYCKTKNVE 338 (598)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~ 338 (598)
.+++.+.+++..+... ......|+-|.-.|++- ++++..+.++..-.. +++ .....|.-++-.|.+-.+++
T Consensus 244 ~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 244 YFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp CCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence 8888888887776432 34566777777766654 555555555443221 111 13455777888888878877
Q ss_pred HHHH
Q 047932 339 EALN 342 (598)
Q Consensus 339 ~A~~ 342 (598)
.|..
T Consensus 322 nA~l 325 (624)
T 3lvg_A 322 NAII 325 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.70 E-value=8.4 Score=40.84 Aligned_cols=267 Identities=10% Similarity=0.031 Sum_probs=138.5
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCChhhHHHHHHHH
Q 047932 261 LCKNGKMEEASRLLDLMIQIGVHPN--TFVYNTLMDGFCLTGRVNHAKELFVSMESNGC-------MHDVVSYTTLINGY 331 (598)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 331 (598)
....|+.++++.++...+..+...+ ...-..+.-+....|..+++..++.......- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456677777666665543210112 22223333445556665667777776654321 01111122233333
Q ss_pred --HhcCCHHHHHHHHHHHccCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 332 --CKTKNVEEALNLYRKMLPKGIRPTVV--TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 332 --~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
.-.++ +++.+.+..+....- +... .-.++...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 33343 455666665554311 1111 11223333446678787788887776642 21222233333444567888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISY--SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFL 485 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (598)
+.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888888877532 2222222 23445567788887777788888764 12223333333334555677777777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCc-cccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 486 DMEAKGVEPDCVIFNTIMLGFIRNNET-SKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 486 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
.+.+.+ .|....-..+.-+....|+. .+++. .+..+.. .+|..+-..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid--~L~~L~~------D~d~~Vrq~ 666 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAID--VLDPLTK------DPVDFVRQA 666 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH--HHHHHHT------CSSHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH--HHHHHcc------CCCHHHHHH
Confidence 666544 34433333444444555555 46777 8888763 356554443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.64 E-value=7.9 Score=35.39 Aligned_cols=172 Identities=12% Similarity=0.075 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLC 151 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (598)
.|.++..-|.+++++++|++++..-.. .++.. -.|-+.-+.+-..+.+.++|......|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-----------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-----------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566667888999999887754321 11111 22344444555566677778777777777776
Q ss_pred hcCChh-HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047932 152 RTGHTI-VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHAD 230 (598)
Q Consensus 152 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (598)
.....+ .=..+.+++.+....+|....-|+.....+...|.+.+++.+|...|- . |-.++...+..++.-+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 655322 122333444332211111123466777778888888888888877762 2 22333355544444333333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047932 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (598)
... ..+..... .+-.|.-.+++..|...++...
T Consensus 182 ~~~--------------e~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 182 ESH--------------TAPLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp CGG--------------GHHHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCc--------------cHHHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 211 11111122 2233555667777766655544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.57 E-value=7.7 Score=35.16 Aligned_cols=173 Identities=13% Similarity=0.082 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLN----STGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR 152 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (598)
.|.++..-|.+++++++|++++..-. +.| +.+. -.|-|.-+.+-..+.+.+++......++..+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~-Q~~s---------a~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALSFLKAK-QGGS---------GTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHH---------HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCC-Ccch---------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566666778888888888875432 221 0000 123344455555666777787777777777665
Q ss_pred cCChh-HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--
Q 047932 153 TGHTI-VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHA-- 229 (598)
Q Consensus 153 ~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 229 (598)
....+ .-.++.+.+.+....+|....-|+..+..+...|.+.|++.+|...|-.-. .-+...+..++.-+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcC
Confidence 43222 223444444433211111123467788888888888888888887764211 11344555444443333
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047932 230 -DDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 230 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (598)
|...++--. ... .+-.|.-.|+...|..+++...
T Consensus 181 ~~~~~e~dlf--------------~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 181 DIEDSTVAEF--------------FSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCCHHHHHHH--------------HHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCcchHHHH--------------HHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 333222111 111 2223456677777777776554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.84 Score=43.50 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD-----ENINPNVVT 218 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 218 (598)
..++..+...|++.+++..++.+...+ |-+...|..++.++.+.|+..+|++.|+.+.. .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445566667777777777777766654 45666777777777777777777777766543 266665543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.08 E-value=7.2 Score=43.25 Aligned_cols=130 Identities=11% Similarity=0.161 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047932 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNT----FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLI 328 (598)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (598)
-|..++..+.+.+.++.+.+.-...++.....+. ..|..+.+.+...|++++|...+-.+.... .-......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 4666777788888888888777776654322222 246677788888888888888877776553 2344555555
Q ss_pred HHHHhcC------------CHHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 047932 329 NGYCKTK------------NVEEALNLYRKMLPK--GIRPTVVTYSTLFLGLFEVHQVEHA-LKLFDEMQH 384 (598)
Q Consensus 329 ~~~~~~~------------~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 384 (598)
...|..| ..++..+++..-.+. .+...+.-|..|-.-+...|++.+| .-+|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5555443 345555655432211 0111112233333344455665544 445555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.96 E-value=3.2e-05 Score=73.05 Aligned_cols=265 Identities=12% Similarity=0.167 Sum_probs=161.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVD 259 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (598)
.+..|..|..+..+.++..+|++-|-+. -|+..|..++....+.|.+++-...+....+..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3567888889988888888877655222 2667788888888899999988888877766533 4444457888
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047932 260 ELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEE 339 (598)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (598)
+|++.++..+..+.+ ..|+..-...+..-|...|.++.|.-+|..+.. |..|..++.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 899988876543332 135666666777778888888888776654432 3344455566666666
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 047932 340 ALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGN 419 (598)
Q Consensus 340 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 419 (598)
|.+.-++. .+..||..+-.+|...+.+.-|...--.++-.. + ....++..|...|.+++-+.+++....
T Consensus 189 AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 65433322 255667777777777777666555443333211 1 112345556677777777777777664
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 047932 420 SKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR-VGLLP------NVVTYNIMIHGLCNDGQMDKAH 481 (598)
Q Consensus 420 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p------~~~~~~~l~~~~~~~g~~~~A~ 481 (598)
.. +....+|+.|.-.|++- ++++..+.++.... .+++- ....|.-++-.|.+-.+++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33 45667777777777664 34444444333221 11111 1234555666666666666553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.74 E-value=13 Score=36.08 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047932 230 DDWNEAKRLFIKMMDQ-----GVHPNVVTFSVIVDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 230 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (598)
++++.|++.+..+.+. +..........++..|...|+++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5667777666555432 122234455566667777777776666555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=2.1 Score=40.73 Aligned_cols=74 Identities=8% Similarity=0.068 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 047932 429 YSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA-----KGVEPDCVIFNTIM 503 (598)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 503 (598)
...++..+...|+++++...++.+.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3456677777888888888888777642 33667788888888888888888888887653 38888876654443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.23 E-value=1.8 Score=34.67 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=11.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 047932 255 SVIVDELCKNGKMEEASRLLDLM 277 (598)
Q Consensus 255 ~~l~~~~~~~g~~~~a~~~~~~~ 277 (598)
..+..++...|++..|...|++.
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 33444555555555555555554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.22 E-value=1.5 Score=45.31 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=25.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
.+...|+++-|+++.++.... .+-+-.+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344455555555555555443 1112445555555555555555555554443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.08 E-value=2.4 Score=32.52 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 423 ELDIISYSCLIDGLCKIGKL---ETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.|+..+-..+..++++..+. .+++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444332 23444444444332111122333334444444555555555544444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.07 E-value=1.9 Score=44.62 Aligned_cols=51 Identities=6% Similarity=-0.016 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 458 LPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
+-+..-|..|+....+.+.+++|.+.|+..+.. .-+...+..|+..|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 345666888888888889999999999988864 578888999999998766
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.98 E-value=4.7 Score=30.88 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 459 PNVVTYNIMIHGLCNDGQM---DKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
|+..+-..+..++++..+. .+++.+++.+.+.+-.-....+..+.-++.+.|++++|.+ +.+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~--y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR--YVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHH--HHHHHHhh
Confidence 3444444444444443322 2344444444443200123333444444555555555555 55555444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.86 E-value=11 Score=34.12 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHCCCCCCHhhHHHH
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKR----LFIKMMDQGVHPNVVTFSVI 257 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l 257 (598)
..|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++...+.+.+++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455556666777777777777654332 1333444444433 33444445666666666666
Q ss_pred HHHHHhCCCHH-HHHHHHHHHH----hcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 258 VDELCKNGKME-EASRLLDLMI----QIG--VHPNTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 258 ~~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
+..+.....-+ .-.++++.++ +.| ..-++.....+...|.+.|++.+|+..|-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 65554432111 1122222222 222 12366777777778888888877776664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.12 E-value=6.8 Score=43.41 Aligned_cols=150 Identities=10% Similarity=0.039 Sum_probs=95.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc--------------------
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI-------------------- 280 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------- 280 (598)
.++..+...+..+.+.++..- .+.+......+..++...|++++|...|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345555556666555554322 1223333344566667777777777777554210
Q ss_pred C--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCC
Q 047932 281 G--VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDV----VSYTTLINGYCKTKNVEEALNLYRKMLPKGIRP 354 (598)
Q Consensus 281 ~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 354 (598)
. ...-..-|..++..+.+.|.++.+.++-....+...+.+. ..|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0 0111234677888999999999999888777654322222 2578889999999999999999988876533
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH
Q 047932 355 TVVTYSTLFLGLFEVHQVEHALK 377 (598)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~ 377 (598)
-...+..++..++..+..+.-..
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhC
Confidence 45677778887787777665543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.65 E-value=32 Score=36.59 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=69.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHH-HHH---HHHHHHHhcC
Q 047932 295 GFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV-TYS---TLFLGLFEVH 370 (598)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~~ 370 (598)
.+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+... .+.. -|. ++.-+|+..|
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSC
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCC
Confidence 3445556555556665555431 111122222333334556666666666665543 1221 121 2233455566
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHH
Q 047932 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKL-ETAWELF 449 (598)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 449 (598)
+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+++.++
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 6666666666666532 2222222222233344555555555555554432 33333333333333333332 4566666
Q ss_pred HHHHh
Q 047932 450 QSLSR 454 (598)
Q Consensus 450 ~~~~~ 454 (598)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 66653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.57 E-value=26 Score=35.48 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=12.7
Q ss_pred HHHHhcCCccccchhHHHHHHHh
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
..+...|....|.. .+..+.+
T Consensus 389 ~~L~~~g~~~~a~~--ew~~~~~ 409 (618)
T 1qsa_A 389 RELMYWNLDNTARS--EWANLVK 409 (618)
T ss_dssp HHHHHTTCHHHHHH--HHHHHHT
T ss_pred HHHHHCCChhhHHH--HHHHHHh
Confidence 34556676666666 6666553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.53 E-value=8.6 Score=29.90 Aligned_cols=67 Identities=12% Similarity=-0.007 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 423 ELDIISYSCLIDGLCKIGK---LETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.|+..+-..+..++++..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555555555543 234555555554432111122333344455555555555555555555
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.09 E-value=3.4 Score=29.75 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIID 189 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 189 (598)
+.++-++.+...+.-|+..+..+.+.+|.+.+++..|.++|+.+...- .+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-------~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCchhhHHHHHH
Confidence 566677777778889999999999999999999999999999987653 334456766654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.08 E-value=4.6 Score=32.37 Aligned_cols=123 Identities=10% Similarity=0.070 Sum_probs=72.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-NINPN-------VVTYNSLIHCFSHADDWNEAKRLFIKMMDQG--VHP 249 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 249 (598)
..+++..-+..+...|.++.|+-+...+... +..|+ ..++..+..++...+++.+|...|++.++.. +.-
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666778888999999999888876543 12233 1256678899999999999999999975431 111
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 250 NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 250 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
+..+...+. ....... ......+...-.-+..||.+.+++++|+.+++.+...
T Consensus 99 ~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 99 TSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred CCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 111111110 0000000 0112234455555778888889999988888876544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.67 E-value=21 Score=32.59 Aligned_cols=168 Identities=11% Similarity=0.095 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHhhHHHH
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLF----IKMMDQGVHPNVVTFSVI 257 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l 257 (598)
.+|.++..-|.+.+++++|++++..-.. .+.+.|+...+-++. +...+.+++++......+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455566667788888888887654332 133344444333333 444445666666666666
Q ss_pred HHHHHhCCCHH-HHHHHHHHHH----hcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047932 258 VDELCKNGKME-EASRLLDLMI----QIG--VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLING 330 (598)
Q Consensus 258 ~~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 330 (598)
+..+.....-+ .-.++++.++ +.| ..-|+.....+...|.+.+++.+|+..|- . |..+++..+..++.-
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHH
Confidence 66655544311 1122222222 222 23466777777788888888888877762 1 212233455444433
Q ss_pred HHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 331 YCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 331 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
+...+... .++...-.+++ .|...++...|..+++...
T Consensus 177 w~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 177 WYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 33333211 11222223333 3455677777777665544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.54 E-value=11 Score=29.27 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 459 PNVVTYNIMIHGLCNDGQM---DKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
|+..+-..+..++.+..+. .+++.+++.+...+-.-.......+.-++.+.|++++|.+ +.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~--y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR--YVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHH--HHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHH--HHHHHHhc
Confidence 4444444445555544332 3445555555443211122333344445555555555555 55555554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.41 E-value=8 Score=33.93 Aligned_cols=112 Identities=10% Similarity=0.017 Sum_probs=77.2
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHhccHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL----YTHSILINCRIMEA 124 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~a 124 (598)
+++.|++++|+......++..|. |...-..+++.++-.|++++|..-++...+. .|+. ..|..+|.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 57899999999999999999997 9999999999999999999999999888765 3432 233333322
Q ss_pred HHHHHHHHHcCCCCC-----HhhHHHHHHHHH--hcCChhHHHHHHHHHHhc
Q 047932 125 AALFTKLRVFGCEPD-----VFTYNTLINGLC--RTGHTIVALNLFEEMANG 169 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~-----~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 169 (598)
...-.+...-+-.|. ..-...++.++. ..|+.++|..+-+.+...
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 122222222111221 122334444444 569999999998888664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.99 E-value=29 Score=33.53 Aligned_cols=189 Identities=11% Similarity=0.020 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHhc-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH----HhcC
Q 047932 265 GKMEEASRLLDLMIQI-----GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGY----CKTK 335 (598)
Q Consensus 265 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 335 (598)
|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+...... .......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6777787777655532 23445667777888888888888877777665543211 112222333222 1222
Q ss_pred CHHH--HHHHHHHHcc--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcC---HHHHHHHHHHHH
Q 047932 336 NVEE--ALNLYRKMLP--KG-IRP---TVVTYSTLFLGLFEVHQVEHALKLFDEMQHN--DVAAD---TYIYNTFIDGLC 402 (598)
Q Consensus 336 ~~~~--A~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 402 (598)
..+. -..+...... .| +-. .......+...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111211111 01 111 1122344556666677777777777666532 11111 334555566666
Q ss_pred HcCCHHHHHHHHHHHh----hCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 403 KNGFVLEALELFCAIG----NSKYELD--IISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 403 ~~g~~~~A~~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
..+++.+|..+++++. .....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6777777776666653 1111121 12345555666666666666666665544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.15 E-value=13 Score=26.79 Aligned_cols=63 Identities=10% Similarity=0.165 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047932 196 FVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVD 259 (598)
Q Consensus 196 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (598)
+.-+..+-++.+-...+.|++....+.+++|-+.+++..|.++++-++.. ......+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44566677777777778888888888888888888888888888887654 2333445665553
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.11 E-value=14 Score=35.54 Aligned_cols=98 Identities=10% Similarity=-0.053 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhh--H
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDE--NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ---GVHPNVVT--F 254 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 254 (598)
.++..+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667888888899999999988888764 23334556777888888888888888888876542 11122110 0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 255 SVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 255 ~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
...+..+...+++..|.+.|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111223345666666666655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 598 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 4e-05
Identities = 42/248 (16%), Positives = 84/248 (33%), Gaps = 11/248 (4%)
Query: 206 QMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNG 265
+ NP++ S + A E + + V +S + G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 266 KMEEASRLLDLMIQIGVHPNTF-VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSY 324
++ A + + + PN Y L + + A ++ S H V +
Sbjct: 184 EIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-AVVH 240
Query: 325 TTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV-TYSTLFLGLFEVHQVEHALKLFDEMQ 383
L Y + ++ A++ YR+ + ++P Y L L E V A ++
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 384 HNDVAADTYIYNTFIDGLCKNGFVLEALELF-CAIGNSKYELDIISYSCLIDGLCKIGKL 442
N + + G + EA+ L+ A+ + ++S L L + GKL
Sbjct: 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKL 355
Query: 443 ETAWELFQ 450
+ A ++
Sbjct: 356 QEALMHYK 363
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 7e-04
Identities = 22/169 (13%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 184 YNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMM 243
Y + + + + D+A+ +L+ + + V + +L + + A + + +
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264
Query: 244 DQGVHPNVV-TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRV 302
+ + P+ + + + L + G + EA + +++ + N L + G +
Sbjct: 265 E--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNI 321
Query: 303 NHAKELF---VSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348
A L+ + + +++ L + + ++EAL Y++ +
Sbjct: 322 EEAVRLYRKALEVFPE----FAAAHSNLASVLQQQGKLQEALMHYKEAI 366
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 598 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.64 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.29 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.25 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.2 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.16 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.13 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.78 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.7 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.7 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.68 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.46 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.41 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.35 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.19 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.17 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.09 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.05 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.99 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.99 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.94 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.92 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.91 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.77 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.74 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.67 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.49 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.27 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.26 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.92 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.69 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.63 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.87 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.82 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.57 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.63 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.14 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.95 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=9.8e-23 Score=197.65 Aligned_cols=380 Identities=13% Similarity=0.066 Sum_probs=226.1
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
..+.|++++|++.|+++++.+|. ++.++..++.++.+.|++++|+..|+++++.. |
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p-------------------- 64 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--P-------------------- 64 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C--------------------
Confidence 34678888888888888888776 77888888888888888888888888776541 2
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
.+..++..++.+|.+.|++++|+..+..+.... +.+...+..........+....+........
T Consensus 65 ---------~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 65 ---------LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp ---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHhhhhccccccccccccccccc-------ccccccccccccccccccccccccccccccc
Confidence 245667777888888888888888888877765 3445555555555555555555555555444
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
.... ................+....+...+....... +.+...+..+...+...|++++|...++..++.. +.+...
T Consensus 129 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T d1w3ba_ 129 QYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cccc-ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHH
Confidence 4322 244444455555666666666666666665542 2244555556666666666666666666665543 223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
+..+...+...|++++|...++...... +.+...+..+...+.+.|++++|+..|+++
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--------------------- 263 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRA--------------------- 263 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH---------------------
Confidence 5555555555566666555555554432 223344444444455555555555555444
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 369 VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWEL 448 (598)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 448 (598)
.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+..++...|++++|+..
T Consensus 264 --------------l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 327 (388)
T d1w3ba_ 264 --------------IELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp --------------HHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred --------------HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHH
Confidence 4432 2234445555555555555555555555554432 33555555666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047932 449 FQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNE 511 (598)
Q Consensus 449 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 511 (598)
+++..+.. +-+..++..+..++...|++++|++.|+++++.. |-+...|..++.+|.+.|+
T Consensus 328 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 328 YRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 66665532 1134555666666666666666666666666543 3345566666666665553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.5e-22 Score=196.36 Aligned_cols=372 Identities=12% Similarity=0.051 Sum_probs=294.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047932 146 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHC 225 (598)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (598)
+...+.+.|++++|++.|+++.+.. |.+...+..+...|.+.|++++|...|+++.+... .+..+|..+..+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~ 76 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4566778888888888888888765 45677888888888888888888888888877532 266788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHA 305 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 305 (598)
|...|++++|+..+....+.. +.+..............+....+........... .................+....+
T Consensus 77 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred hhhhccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhh
Confidence 888888888888888887763 3344445555555556666666666555555543 23444555566667777888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN 385 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 385 (598)
...+....... +.+...+..+...+...|++++|...+.+.....+. +...+..+...+...|++++|...+.+....
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 88887776653 446677888888889999999999999988776433 6678888889999999999999999998876
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047932 386 DVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYN 465 (598)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 465 (598)
. +.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++..... .+.+...+.
T Consensus 233 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 309 (388)
T d1w3ba_ 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhh
Confidence 4 5567788889999999999999999999998775 447889999999999999999999999998876 345678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChH
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTL 537 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~ 537 (598)
.+...+...|++++|++.|+++++.. |.+..++..++.+|.+.|++++|.+ .++++++.. +-.++..
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~l~--P~~~~a~ 376 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM--HYKEAIRIS--PTFADAY 376 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH--HHHHHHTTC--TTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhC--CCCHHHH
Confidence 99999999999999999999998764 5567889999999999999999999 999999873 4444443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.4e-13 Score=128.69 Aligned_cols=272 Identities=13% Similarity=0.022 Sum_probs=149.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
.-..+..+.+.|++++|+..|+++.+.+ |.+..+|..+..++...|++++|...|++..+... -+...+..+
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 93 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMAL 93 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccc
Confidence 3456777889999999999999999876 55688999999999999999999999999887643 367788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRV 302 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 302 (598)
..+|...|++++|.+.++.+.... |+............... +.......+..+...+.+
T Consensus 94 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 152 (323)
T d1fcha_ 94 AVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGA-------------------GLGPSKRILGSLLSDSLF 152 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHH
T ss_pred cccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhc-------------------ccccchhhHHHHHHhhHH
Confidence 999999999999999999988752 22111100000000000 000000011111222333
Q ss_pred HHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 303 NHAKELFVSMESNGC-MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDE 381 (598)
Q Consensus 303 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 381 (598)
.+|...+........ ..+...+..+...+...|++++|+..+++.....+. +...+..+...+...|++++|...|++
T Consensus 153 ~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 153 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHH
Confidence 444444444333211 112334444444455555555555555554443221 344444455555555555555555555
Q ss_pred HhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh----------CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047932 382 MQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGN----------SKYELDIISYSCLIDGLCKIGKLETA 445 (598)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A 445 (598)
+++.. +.+...+..++.+|.+.|++++|+..|+++++ .........|..+-.++...++.+.+
T Consensus 232 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 232 ALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44432 22344455555555555555555555554432 11122344455555555555555433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.8e-13 Score=126.58 Aligned_cols=269 Identities=14% Similarity=0.025 Sum_probs=181.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG 300 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 300 (598)
.....+.+.|++++|+..|+++++.. +-+..+|..+..++...|++++|...+.++++.. +-+...+..+..++...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45666778888888888888887763 3356677778888888888888888888877764 235667777777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047932 301 RVNHAKELFVSMESNGCMHDVVSY-TTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLF 379 (598)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 379 (598)
++++|.+.++.+.... |+.... ........ . .+.......+..+...+...++...+
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-G-------------------AGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-h-------------------cccccchhhHHHHHHhhHHHHHHHHH
Confidence 8888888888777653 221110 00000000 0 00001111122233445667778888
Q ss_pred HHHhhCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047932 380 DEMQHND-VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL 458 (598)
Q Consensus 380 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (598)
.++.+.. ...+..++..+...+...|++++|+..|+++.... +.+..+|..+..+|...|++++|++.++++.+.. +
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence 7776542 23456778888888999999999999999988664 3467888899999999999999999999988753 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCCCHHHHHHHHHHHHhcCCcccc
Q 047932 459 PNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG----------VEPDCVIFNTIMLGFIRNNETSKS 515 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~p~~~~~~~l~~~~~~~g~~~~A 515 (598)
-+..+|..++.+|.+.|++++|++.|++.++.. .......|..+..++...|+.+.+
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 246778889999999999999999999887631 111233455566666666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.2e-10 Score=105.44 Aligned_cols=206 Identities=8% Similarity=0.078 Sum_probs=160.2
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
+.+.+.+++|++.++.+++.+|. +..+|+....++...| ++++|+..+++++...
T Consensus 53 ~~~~e~~~~Al~~~~~ai~lnP~--~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~---------------------- 108 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---------------------- 108 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----------------------
T ss_pred HHhCCchHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH----------------------
Confidence 44678889999999999999987 9999999999888876 4889888888887542
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
+.+..+|+.+..++.+.|++++|++.++++.+.+ +.+...|..+...+.+.|++++|++.++.+
T Consensus 109 ---------p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~a 172 (315)
T d2h6fa1 109 ---------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQL 172 (315)
T ss_dssp ---------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred ---------HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-------hcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2367788999999999999999999999999976 667899999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 208 KDENINPNVVTYNSLIHCFSHADD------WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
.+.++. +...|+.+..++.+.+. +++|++.+.+.++.. +.+...|..+...+.. ...+++.+.++...+..
T Consensus 173 l~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~ 249 (315)
T d2h6fa1 173 LKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQ 249 (315)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHT
T ss_pred HHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhC
Confidence 987544 77788888777766554 678888888888763 3466677766655444 44677777777776653
Q ss_pred CC-cCHHHHHHHHHHHH
Q 047932 282 VH-PNTFVYNTLMDGFC 297 (598)
Q Consensus 282 ~~-~~~~~~~~ll~~~~ 297 (598)
.. .+...+..++..|.
T Consensus 250 ~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 250 PSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp TTCCCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 22 23445555555553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=3.6e-09 Score=99.49 Aligned_cols=193 Identities=10% Similarity=0.061 Sum_probs=109.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHccC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc--CHHHH
Q 047932 325 TTLINGYCKTKNVEEALNLYRKMLPK----GIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN----DVAA--DTYIY 394 (598)
Q Consensus 325 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~ 394 (598)
..+...+...|+++.+...+...... +.......+......+...++...+...+...... +..+ ....+
T Consensus 137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (366)
T d1hz4a_ 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 216 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 33444555556666665555554332 11112233444445555566666666665554321 1111 12334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC-HHHHHH
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYE---LDIISYSCLIDGLCKIGKLETAWELFQSLSR----VGLLPN-VVTYNI 466 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~ 466 (598)
......+...|++++|...++........ .....+..+..++...|++++|...++++.. .+..|+ ...+..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 55566677778888888887776644322 1234556677788888888888888877653 233333 345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHhcCCccccch
Q 047932 467 MIHGLCNDGQMDKAHDLFLDMEAK----GVEP----DCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~----~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+..+|...|++++|.+.+++.++. |... ....+..++..+...++.+++.+
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 777888888888888888877643 2111 12334445555666666666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.9e-10 Score=105.87 Aligned_cols=227 Identities=12% Similarity=0.096 Sum_probs=147.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 047932 323 SYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVH-QVEHALKLFDEMQHNDVAADTYIYNTFIDGL 401 (598)
Q Consensus 323 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (598)
.++.+...+.+.+.+++|+++++++++.++. +...|.....++...+ ++++|+..++.+++.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 4455555666677777777777777766433 5566666666666655 4777777777776654 44677777777777
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----
Q 047932 402 CKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQ----- 476 (598)
Q Consensus 402 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----- 476 (598)
.+.|++++|+..++++++.. +.+...|..+..++...|++++|+..++++++.++ -+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhh
Confidence 77788888888888777654 34677777788888888888888888888877532 256667766666555444
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCCh--H-HHHHH-----HHHhC
Q 047932 477 -MDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKT--L-ICSIS-----IMLQK 547 (598)
Q Consensus 477 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~-~~~~~-----~~~~~ 547 (598)
+++|++.+.++++.. |.+...|..+...+...| .+++.+ .++...+. .|+. . .+..+ ....+
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~--~~~~~~~l-----~~~~~~~~~~~~l~~~y~~~~~~ 271 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPN--LLNQLLDL-----QPSHSSPYLIAFLVDIYEDMLEN 271 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHH--HHHHHHHH-----TTTCCCHHHHHHHHHHHHHHHHT
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHH--HHHHHHHh-----CCCcCCHHHHHHHHHHHHHHHhc
Confidence 567888888777754 456667766665554443 567777 77777654 3332 1 11111 12245
Q ss_pred CCCCChhhHHHhhhc
Q 047932 548 DMSPGDTMFSTALLM 562 (598)
Q Consensus 548 ~~~~a~~~~~~~l~~ 562 (598)
+.+.+...+++++++
T Consensus 272 ~~~~~~~~~~ka~~l 286 (315)
T d2h6fa1 272 QCDNKEDILNKALEL 286 (315)
T ss_dssp TCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666677777776655
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=1.5e-09 Score=99.77 Aligned_cols=235 Identities=9% Similarity=0.056 Sum_probs=162.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHH
Q 047932 54 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRV 133 (598)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~ 133 (598)
..+++..+|++++...|. ++..|...+..+.+.++... ..+.... -....++|..+|++..+
T Consensus 31 ~~~Rv~~vyerAl~~~~~--~~~lW~~y~~~~~~~~~~~~---------~~~~~~~-------~~~~~~~a~~i~~ral~ 92 (308)
T d2onda1 31 ITKRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLA---------EKGDMNN-------AKLFSDEAANIYERAIS 92 (308)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHH---------HTSCCHH-------HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCchHH---------HHHHHhh-------cccchHHHHHHHHHHHH
Confidence 346788899999988876 88899887776654332111 0000000 00034566777777765
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 047932 134 FGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD-TVTYNTIIDGVCKEGFVDKAMELFLQMKDENI 212 (598)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 212 (598)
...+.+...|...+..+.+.|+++.|..+|+++.... +.+ ...|...+..+.+.|+++.|.++|+.+.+.+.
T Consensus 93 ~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-------~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~ 165 (308)
T d2onda1 93 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-------cCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 4344466678888888889999999999999988754 223 45788888888889999999999998887643
Q ss_pred CCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCcC--HHH
Q 047932 213 NPNVVTYNSLIHC-FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG-VHPN--TFV 288 (598)
Q Consensus 213 ~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~ 288 (598)
. +...|...+.. +...|+.+.|..+|+.+++. .+.+...|...+..+...|+++.|..+|++.++.. ..|. ...
T Consensus 166 ~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~i 243 (308)
T d2onda1 166 T-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp C-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred C-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3 44445444433 34467888888888888876 34466778888888888888888888888887753 2222 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
|...+..-...|+.+.+..+++++.+.
T Consensus 244 w~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 244 WARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777667778888888887776553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=5.8e-09 Score=98.03 Aligned_cols=273 Identities=10% Similarity=-0.019 Sum_probs=159.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--C---CCHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI--N---PNVV 217 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~ 217 (598)
......++...|++++|++++++.....+... ......++..+...+...|++++|...|++...... . ....
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGW--FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC--cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 34456777889999999999999887641100 000124667788888899999999999988765311 1 1123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC---HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC----CcCH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQ----GVHPN---VVTFSVIVDELCKNGKMEEASRLLDLMIQIGV----HPNT 286 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~ 286 (598)
.+..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+........ ....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 4556677788888888888888776542 11111 12445566677788888888888877765421 2223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCC---CHH
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESN----GCMH--DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRP---TVV 357 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~ 357 (598)
..+......+...++...+...+...... +..+ ....+..+...+...|++++|...+.......... ...
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 34455556667777777777766655432 1000 12234445556666777777777776665442221 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQH----NDVAAD-TYIYNTFIDGLCKNGFVLEALELFCAI 417 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 417 (598)
.+..+...+...|++++|...++.+.. .+..|+ ...+..+..++...|++++|...+++.
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455566666666666666655542 121221 233444445555555555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=3.1e-09 Score=97.48 Aligned_cols=186 Identities=12% Similarity=0.044 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 302 VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDE 381 (598)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 381 (598)
.++|..+|++..+...+.+...|...+..+...|+++.|..+|+++...........|...+..+.+.|+.+.|..+|.+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34555555555544333444455555555556666666666666655543322234455556666666666666666666
Q ss_pred HhhCCCCcCHHHHHHHHHH-HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC
Q 047932 382 MQHNDVAADTYIYNTFIDG-LCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVG-LLP 459 (598)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p 459 (598)
+.+.+ +.+...+...+.. +...|+.+.|..+|+.+.+.. +.+...|..++..+...|+++.|..+|++..... ..|
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 65543 2233333333222 233466666777777666542 3456667777777777777777777777766542 222
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 460 N--VVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 460 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
+ ...|...+..-...|+.+.+..+++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 34566666666666777777777776655
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=1.2e-11 Score=115.83 Aligned_cols=229 Identities=11% Similarity=-0.035 Sum_probs=147.6
Q ss_pred cCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCcCHHHH-HHHHHHHHHcCCHHHH
Q 047932 334 TKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVH--QVEHALKLFDEMQHNDVAADTYIY-NTFIDGLCKNGFVLEA 410 (598)
Q Consensus 334 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A 410 (598)
.|.+++|+..++.+...++. +...|..+..++...+ ++++|...+.++.... +.+...+ ......+...+.+++|
T Consensus 86 ~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 34466777777777665433 5556666665555544 4777777777777654 3344443 3344566667788888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 411 LELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
+..++.++..+ +-+...|..+..++...|++++|...++...+. .|+. ..+...+...+..+++...+......
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 88888777665 346777777888888888777766555544332 1111 12233345556667777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccc
Q 047932 491 GVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDC 566 (598)
Q Consensus 491 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~ 566 (598)
. +++...+..++..+...|+.++|.. .+.+..+. .|+...... .+...|+.++|...+++++++||++
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~ 309 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCK--ELQELEPE-----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 309 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHH--HHHHHCTT-----CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHH--HHHHHHhh-----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence 4 4455556666777777788888888 88777643 455443332 3445678888888888888888888
Q ss_pred cchhhHhhhhCC
Q 047932 567 SCDLESLIHNTD 578 (598)
Q Consensus 567 ~~~~~~l~~~~~ 578 (598)
+.+|..|.+..-
T Consensus 310 ~~y~~~L~~~~~ 321 (334)
T d1dcea1 310 AAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888887755443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=2.5e-10 Score=106.55 Aligned_cols=157 Identities=10% Similarity=0.013 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHH----------hcCCHHHHHHHHHHHhhCCCC
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC----------KEGFVDKAMELFLQMKDENIN 213 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~~~~~~~~ 213 (598)
..++......+..++|+++++++...+ |.+...|+..-..+. ..|++++|+.+++...+.+.+
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~-------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk 105 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 105 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334443434445589999999999876 344555644333322 233466677777776664322
Q ss_pred CCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHH
Q 047932 214 PNVVTYNSLIHCFSHAD--DWNEAKRLFIKMMDQGVHPNVVTFS-VIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYN 290 (598)
Q Consensus 214 ~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (598)
+...|..+..++...+ ++++|...+.++.+.. +++...+. .....+...+.+++|+..++.+++.+. -+...|+
T Consensus 106 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~ 182 (334)
T d1dcea1 106 -SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWH 182 (334)
T ss_dssp -CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHH
T ss_pred -cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHH
Confidence 5556666655555543 4677777777776652 22344433 333455566677777777776666542 2555666
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 047932 291 TLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 291 ~ll~~~~~~g~~~~a~~~~~ 310 (598)
.+..++...|++++|...+.
T Consensus 183 ~l~~~~~~~~~~~~A~~~~~ 202 (334)
T d1dcea1 183 YRSCLLPQLHPQPDSGPQGR 202 (334)
T ss_dssp HHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHhcCHHHHHHHHH
Confidence 66666666666665544433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=9.9e-10 Score=98.25 Aligned_cols=197 Identities=11% Similarity=-0.045 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
.+|..++.+|.+.|++++|++.|++.++.+ |.+..+|..+..+|.+.|++++|++.|+++.+.... +..++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~ 109 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHL 109 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHH
Confidence 467778888889999999999999988875 556888888899999999999999999888876432 566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG 300 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 300 (598)
.+..+|...|++++|...|+..++.. +.+......+...+.+.+..+....+......... +...+. ++..+....
T Consensus 110 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~ 185 (259)
T d1xnfa_ 110 NRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGWN-IVEFYLGNI 185 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC--CSTHHH-HHHHHTTSS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch--hhhhhh-HHHHHHHHH
Confidence 88888888899999999998888763 22444444444455555555555555555444321 111111 122221111
Q ss_pred C----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 301 R----VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 301 ~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
. .+.+...+....... +....+|..+...|...|++++|.+.|++.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 186 SEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1 111111111111110 112234555666677777777777777776655
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=2.5e-09 Score=95.59 Aligned_cols=227 Identities=11% Similarity=-0.050 Sum_probs=154.8
Q ss_pred cccccCCChHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHH
Q 047932 47 QGDINLITPNEALCIFDYMLRMHPS--PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEA 124 (598)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a 124 (598)
..+...++.+.|+..+++++...+. +....+|..++..|.+.|++++|+..|+++++. .|
T Consensus 7 ~~~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p---------------- 68 (259)
T d1xnfa_ 7 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RP---------------- 68 (259)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC----------------
T ss_pred hcccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CC----------------
Confidence 3445566778888888888765442 124457888899999999999999999998864 22
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELF 204 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 204 (598)
.+..+|..++.+|.+.|++++|+..|+++.+.+ |.+..++..+..++...|++++|.+.|
T Consensus 69 -------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~ 128 (259)
T d1xnfa_ 69 -------------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQDDL 128 (259)
T ss_dssp -------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-------hhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence 366788899999999999999999999999876 456778889999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCH----HHHHHHHHHHHhc
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKM----EEASRLLDLMIQI 280 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~ 280 (598)
+...+... .+......+..++...+..+.+..+........ +....+. ++..+...... +.+...+......
T Consensus 129 ~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (259)
T d1xnfa_ 129 LAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL 204 (259)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH
T ss_pred HHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99887632 245555555555666666666666666555532 2222222 22222222222 2222211111111
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 281 GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
. +....++..+...+...|++++|...|+......
T Consensus 205 ~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 205 A-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred C-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 0 1123456778889999999999999999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=4.4e-07 Score=81.92 Aligned_cols=171 Identities=12% Similarity=-0.048 Sum_probs=99.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCCHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE----NI-NPNVVT 218 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~ 218 (598)
...+..|...|++++|.+.|.++.......+. .+.-..+|..+..+|.+.|++++|.+.++..... |. .....+
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~-~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGN-EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 33456788889999999998887763200000 0112357788888888888888888888776542 10 011334
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC-----H-
Q 047932 219 YNSLIHCFS-HADDWNEAKRLFIKMMDQ----GVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN-----T- 286 (598)
Q Consensus 219 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~- 286 (598)
+..+...|. ..|++++|++.|++..+. +.++ ...++..+...+...|++++|+..++++........ .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 555555553 357777777777766432 1111 123455666677777777777777777665421111 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
..+...+.++...|+++.|...++...+.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 12233344555666666666666666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=4.8e-07 Score=75.63 Aligned_cols=64 Identities=13% Similarity=-0.127 Sum_probs=40.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
+..+|..++.+|...|++++|++.|++.++.+ +.+...|..+..++.+.|++++|++.|++...
T Consensus 35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-------p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 98 (192)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-------hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44455566666666666666666666666654 44566666666666666666666666666543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=7.5e-08 Score=73.24 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=88.2
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
|..+.+.|++++|+..|++++..+|. ++.+|..++.++.+.|++++|+..|+++++..
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------------- 67 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------------------- 67 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc--chhhhhcccccccccccccccchhhhhHHHhc--------------------
Confidence 45567899999999999999999987 99999999999999999999999999998652
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTII 188 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li 188 (598)
+.+...|..++.++...|++++|+..|++..+.. |.+...+..+-
T Consensus 68 -----------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~l~ 112 (117)
T d1elwa_ 68 -----------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-------ANNPQLKEGLQ 112 (117)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------TTCHHHHHHHH
T ss_pred -----------cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence 3477789999999999999999999999999875 44555554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=4.6e-07 Score=81.79 Aligned_cols=162 Identities=14% Similarity=0.053 Sum_probs=79.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-----CcCHHHHHHH
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQ----GVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV-----HPNTFVYNTL 292 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l 292 (598)
...|...+++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|...++....... .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566677777777777666542 1111 123566666677777777777776666544210 0112234444
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCC-----H-HHHH
Q 047932 293 MDGFCL-TGRVNHAKELFVSMESN----GCMH-DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT-----V-VTYS 360 (598)
Q Consensus 293 l~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~-~~~~ 360 (598)
...|.. .|++++|.+.+++..+. +.++ ...++..+...+...|++++|+..|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444433 46666666666654321 1111 122344455556666666666666665544321111 0 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 361 TLFLGLFEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~ 384 (598)
..+..+...++++.|...+++..+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 233334445555555555555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=7.7e-07 Score=74.32 Aligned_cols=125 Identities=13% Similarity=-0.010 Sum_probs=91.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF 226 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (598)
+..+...|+++.|++.|+++ .+++..+|..+..+|...|++++|++.|++..+.+.. +...|..+..+|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 80 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHH
Confidence 55667888888888888764 2466778888888888889999999888888876433 677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC--------------C-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHP--------------N-VVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~--------------~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
.+.|++++|++.|++.+...... + ..++..+..++.+.|++++|.+.+....+...
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88888888888888876531110 0 12344566667777777777777777666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.70 E-value=8.2e-05 Score=65.49 Aligned_cols=111 Identities=12% Similarity=-0.052 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHH
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCK----NGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK----IGKLE 443 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 443 (598)
...+...+......+ +...+..+...+.. ..+...+..+++...+.+ +......+...|.. ..+++
T Consensus 126 ~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 344444444444322 33334444444433 234445555555555433 44444444444443 34566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 491 (598)
+|+..|++..+.| +...+..|...|.+ ..+.++|.++|++....|
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 6666666666543 34444555555543 235666666666666555
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.68 E-value=5.5e-05 Score=66.66 Aligned_cols=221 Identities=10% Similarity=-0.059 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCK----TKNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
..+..|...+...+++++|++.|++..+.| +...+..|...|.. ..++..|...+......+ +......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 344444445555556666666666555544 44444445554443 445566666666555443 22222333
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 363 FLGLFE----VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK----NGFVLEALELFCAIGNSKYELDIISYSCLID 434 (598)
Q Consensus 363 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 434 (598)
...+.. ..+.+.|...++.....+. ......+...+.. ......+...+......+ +...+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhh
Confidence 332222 3456667777776666542 1222222222322 345667777777766543 6667777777
Q ss_pred HHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047932 435 GLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF 506 (598)
Q Consensus 435 ~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 506 (598)
.|.. ..+...+...++...+.| +......+...+.. ..++++|+.+|++..+.| ++..+..|..+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 7775 456778888888887753 55666667666664 568899999999988877 566777777777
Q ss_pred Hh----cCCccccchhHHHHHHHhc
Q 047932 507 IR----NNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 507 ~~----~g~~~~A~~~~~~~~~~~~ 527 (598)
.+ ..+.++|.+ ++++..+.
T Consensus 225 ~~G~g~~~n~~~A~~--~~~kAa~~ 247 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIE--NFKKGCKL 247 (265)
T ss_dssp HTTSSSSCCSTTHHH--HHHHHHHH
T ss_pred HcCCCCccCHHHHHH--HHHHHHHC
Confidence 65 336788888 88888766
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=8.7e-07 Score=67.10 Aligned_cols=104 Identities=12% Similarity=0.001 Sum_probs=72.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047932 397 FIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQ 476 (598)
Q Consensus 397 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 476 (598)
-...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++.++.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 4556677777777777777777654 4467777777777777888888888887777753 3356677777777777888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 477 MDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 477 ~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
+++|+..|++.++.. |-+...+..+.
T Consensus 87 ~~~A~~~~~~a~~~~-p~~~~~~~~l~ 112 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE-ANNPQLKEGLQ 112 (117)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 888888887777653 33444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.8e-07 Score=74.57 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=82.2
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
|+.+.+.|++++|+..|++++..+|. ++.+|..++.++...|++++|+..|+++++..
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-------------------- 74 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-------------------- 74 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh--hhhhhhhhHHHHHhccccchHHHHHHHHHHHc--------------------
Confidence 44566899999999999999999987 99999999999999999999999999998652
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
+.+..+|..++.+|...|++++|...++++....
T Consensus 75 -----------p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 75 -----------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -----------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2366789999999999999999999999999865
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.2e-06 Score=69.09 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
+...+..|.+.|++++|+..|+++.+.+ |.+...|..+..+|...|++++|.+.|+.+.+... .+..+|..+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~ 84 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRR 84 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-------hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHH
Confidence 3345566778888888888888887765 55677778888888888888888888888777532 256777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
+.++...|++++|...+++....
T Consensus 85 g~~~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 85 AASNMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888888888888888877775
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=1.4e-06 Score=73.61 Aligned_cols=99 Identities=14% Similarity=0.017 Sum_probs=70.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVV 217 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 217 (598)
|++..+...+..|.+.|++++|+..|++++..+ |.+...|..+..+|.+.|++++|+..|+.+.+... -+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~ 73 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVK 73 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHH
Confidence 455566667777777777777777777777765 55677777777777777777777777777776432 2566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMD 244 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (598)
+|..+..+|...|++++|+..|++.++
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777777777776654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=2.5e-06 Score=72.01 Aligned_cols=99 Identities=11% Similarity=-0.059 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 047932 354 PTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLI 433 (598)
Q Consensus 354 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 433 (598)
|+...+...+..+.+.|++++|+..|.+++... |.+...|..+..+|.+.|++++|+..|+++++.. +-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 455555666666666677777777776666553 4456666666666666666666666666666543 22455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 047932 434 DGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~ 454 (598)
.+|...|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.38 E-value=1.4e-06 Score=65.35 Aligned_cols=91 Identities=8% Similarity=-0.035 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLI 223 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 223 (598)
..++..+.+.|++++|+..|++++..+ |.+..+|..+..++.+.|++++|+..|++..+... .+..++..+.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la 91 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALA 91 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-------cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHH
Confidence 345666777777777777777777765 44577777777777777777777777777776532 2566777777
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 047932 224 HCFSHADDWNEAKRLFIKM 242 (598)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~ 242 (598)
.+|...|++++|.+.+++.
T Consensus 92 ~~y~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 92 VSHTNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 7777777777777777665
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=2.3e-06 Score=64.85 Aligned_cols=95 Identities=11% Similarity=-0.013 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGK---LETAWELFQSLSRVGLLPN-VVTYNIMIHG 470 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 470 (598)
..+++.+...+++++|++.|++.+..+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666777777777777777777655 4466777777777766443 4457777777776433333 2356667777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 047932 471 LCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~ 490 (598)
|.+.|++++|++.|+++++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77788888888888887774
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.4e-07 Score=92.20 Aligned_cols=224 Identities=8% Similarity=-0.063 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH----HHHhccHHHHHHHHHHHH
Q 047932 57 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS----ILINCRIMEAAALFTKLR 132 (598)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~ll~~~~~~a~~~~~~~~ 132 (598)
+|.+.|+++++..|. .+.++..+...+..+|++++| |++++.. .|+..... .+.+..+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~--~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD--MTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGG--GTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 678888888887776 566777777778777777765 6776643 23211110 111113345556666655
Q ss_pred HcCCCCCHhhHHH--HHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 133 VFGCEPDVFTYNT--LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 133 ~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
+....++..-... +...+...+.++.|+..+....... +++...+..+...+.+.|+.+.|...+......
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 149 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-------LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY 149 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------------CCHHHHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC
Confidence 4432333222211 1222333455666666555544433 445667777888888888888888777666542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHH
Q 047932 211 NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYN 290 (598)
Q Consensus 211 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (598)
. ...++..+...+...+++++|...|.+..+.. +.+...|+.+...+...|+..+|...|.+.+... +|...++.
T Consensus 150 ~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~ 224 (497)
T d1ya0a1 150 I---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAST 224 (497)
T ss_dssp H---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHH
T ss_pred C---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 1 23467778888888889999999998888763 3355688888888888999999998888888764 45677777
Q ss_pred HHHHHHHhc
Q 047932 291 TLMDGFCLT 299 (598)
Q Consensus 291 ~ll~~~~~~ 299 (598)
.|...+.+.
T Consensus 225 nL~~~~~~~ 233 (497)
T d1ya0a1 225 NLQKALSKA 233 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=2.4e-06 Score=63.93 Aligned_cols=88 Identities=11% Similarity=-0.056 Sum_probs=42.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQM 477 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 477 (598)
...+.+.|++++|+..|++++... +-+..+|..+..++...|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 334445555555555555554433 2244455555555555555555555555554431 11344444455555555555
Q ss_pred HHHHHHHHHH
Q 047932 478 DKAHDLFLDM 487 (598)
Q Consensus 478 ~~A~~~~~~~ 487 (598)
++|++.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=5.7e-06 Score=62.64 Aligned_cols=95 Identities=8% Similarity=0.064 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCC-HHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF---VDKAMELFLQMKDENINPN-VVTY 219 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~ 219 (598)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+.+|+++...+..|+ ..++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~ 75 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYV 75 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHH
Confidence 456677777788888888888888765 5667777778877776544 4457888887776543333 2366
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..+|...|++++|++.|+++++.
T Consensus 76 ~~Lg~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 76 FYLAVGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 67778888888888888888888775
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.22 E-value=0.0007 Score=60.62 Aligned_cols=176 Identities=11% Similarity=0.125 Sum_probs=105.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVV 217 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 217 (598)
|+..-...++..|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.... +..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------------~~rl~~~~v~l~~~~~avd~~~k~~------~~~ 70 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRLASTLVHLGEYQAAVDGARKAN------STR 70 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------------HHHHHHHHHTTTCHHHHHHHHHHHT------CHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------------HHHHHHHHHhhccHHHHHHHHHHcC------CHH
Confidence 4555556677888899999999999986533 5667788889999999988887552 677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (598)
+|..+...+........+. +.......+......++..|-..|.+++...+++..... -..+...++.++.+|+
T Consensus 71 ~~k~~~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lya 144 (336)
T d1b89a_ 71 TWKEVCFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 144 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHH
Confidence 8888888888877765432 222233445566677888999999999999999987654 2456778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 298 LTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKM 347 (598)
Q Consensus 298 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 347 (598)
+.+ .++..+.+.... +......++..|.+.+-+.++.-++.++
T Consensus 145 k~~-~~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 145 KFK-PQKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp TTC-HHHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HhC-hHHHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence 754 344444443321 1122233344444455555544444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.8e-05 Score=64.24 Aligned_cols=81 Identities=11% Similarity=-0.093 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
+|+.+..+|.+.|++++|+..+++.++.+ +.+..+|..++.+|...|++++|+..|+++++.. |-+......+..+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 46667778888888888888888887753 2257778888888888888888888888888754 335555555555544
Q ss_pred hcC
Q 047932 508 RNN 510 (598)
Q Consensus 508 ~~g 510 (598)
+.+
T Consensus 142 ~~~ 144 (170)
T d1p5qa1 142 RIR 144 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.8e-06 Score=84.29 Aligned_cols=114 Identities=9% Similarity=-0.137 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGL 471 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 471 (598)
..+..+...+.+.|+.++|...+....... ...++..+...+...|++++|+..|++..+.. +.+...|+.|+..+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 334444444455555555554444433211 12344445555555555555555555555531 11234555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 472 CNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
...|+..+|+..|.+.+... +|-..++..|...+.+..
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 55555555555555555543 444555555555554433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=0.003 Score=56.35 Aligned_cols=288 Identities=13% Similarity=0.106 Sum_probs=151.8
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVI 257 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (598)
.||..--..++..|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+.+.+. -+..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 34555666778888899999999999986643 566788888999999998887654 266788888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 047932 258 VDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNV 337 (598)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 337 (598)
...+.......-+ .+.......+......++..|...|.++....+++...... ..+...++.++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence 8888887766543 22233334456666778888999999999999999876542 456777888888888764 4
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047932 338 EEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAI 417 (598)
Q Consensus 338 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 417 (598)
++..+.+..... .-| ...++..|.+.+-+.++.-++.++... + +++.....+..+..++..+.+-+
T Consensus 149 ~kl~e~l~~~s~---~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~----~----~A~~~~i~~~~~~~~~~~f~e~~ 214 (336)
T d1b89a_ 149 QKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDKYEEY----D----NAIITMMNHPTDAWKEGQFKDII 214 (336)
T ss_dssp HHHHHHHHHHST---TSC---HHHHHHHHHTTTCHHHHHHHHHHTTCH----H----HHHHHHHHSTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhccc---cCC---HHHHHHHHHHcCChHHHHHHHHhcCCH----H----HHHHHHHHcchhhhhHHHHHHHH
Confidence 555555544322 112 223445555555555555444433211 0 00000011111110111111111
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047932 418 GNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCV 497 (598)
Q Consensus 418 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 497 (598)
.+. .|+..|-..+..|... +++-...++..+... + |. ..++..+.+.++......+++.....| +..
T Consensus 215 ~k~---~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~-~--d~---~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~ 281 (336)
T d1b89a_ 215 TKV---ANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR-L--DH---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKS 281 (336)
T ss_dssp HHC---SSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG-C--CH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHH
T ss_pred Hcc---CChHHHHHHHHHHHHc-CHHHHHHHHHHhccC-C--CH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHH
Confidence 111 1333333344444332 122223333332221 1 11 234555556677777777776665544 456
Q ss_pred HHHHHHHHHHhcCCccc
Q 047932 498 IFNTIMLGFIRNNETSK 514 (598)
Q Consensus 498 ~~~~l~~~~~~~g~~~~ 514 (598)
..+++...|...++++.
T Consensus 282 vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 282 VNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCcchhHH
Confidence 77788888888877543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=4.7e-05 Score=58.24 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC-----HHHHHHHH
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL-PN-----VVTYNIMI 468 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-----~~~~~~l~ 468 (598)
..+...+...|++++|+..|+++++.+ +.+..++..+..+|...|++++|+..++++++.... +. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345566667777777777777766654 335666777777777777777777777776552110 01 23455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 047932 469 HGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
..+...+++++|++.|++.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 6666777777777777776653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.05 E-value=7.4e-05 Score=59.19 Aligned_cols=77 Identities=13% Similarity=0.002 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047932 427 ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG 505 (598)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 505 (598)
.+|..+..+|.+.|++++|++.++++++.+ +.+..+|..++.++...|++++|+..|++.++.. |-|..+...+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456778888888899999999988888753 3367888888888888999999999998888754 3345555444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=3.3e-05 Score=59.12 Aligned_cols=97 Identities=11% Similarity=0.139 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-----
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN-PN----- 215 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----- 215 (598)
.+..++..+.+.|++++|+..|++.++.+ |.+...+..+..+|.+.|++++|++.++++++.... +.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~ 78 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34566777788888888888888887765 556777777888888888888888888777653111 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 216 VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+|..+...+...+++++|++.|++.+..
T Consensus 79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 134555666666777777777777766553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=0.00015 Score=58.50 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENIN-PN-------------VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV 247 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 247 (598)
..+...+..+.+.|++++|+..|.+....... +. ..+|+.+..+|.+.|++++|+..++..+...
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 34455667888899999999999887753110 00 1234444555555555555555555555542
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 248 HPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
+.++.++..+..+|...|++++|+..|+.+++.
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 224445555555555555555555555555554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.99 E-value=2.1e-05 Score=61.78 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=72.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+-+.+.+++|++.|+.+++.+|. ++.++..+..++...+++..+.+-.+. +++|+..|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~--~~~~~~~~g~~l~~~~~~~~~~e~~~~--------------------~~~Ai~~~ 64 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQM--------------------IQEAITKF 64 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHHH--------------------HHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHhhhhhhhhHHHHH--------------------HHHHHHHH
Confidence 34556689999999999999997 999999999999877776655543332 34677778
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCC-----------hhHHHHHHHHHHhc
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGH-----------TIVALNLFEEMANG 169 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~ 169 (598)
++.++.+ +.+..+|..++.+|...|+ +++|.+.|++....
T Consensus 65 ~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 65 EEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 8877765 3367788888888877653 45566666666653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.95 E-value=0.00019 Score=56.78 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHT 156 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 156 (598)
.+...+..+.+.|++.+|+..|.+++..-...... .+.. ....... ....+|..+..+|.+.|++
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~---------~~~~--~~~~~~~----~~~~~~~Nla~~~~~l~~~ 83 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW---------DDQI--LLDKKKN----IEISCNLNLATCYNKNKDY 83 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC---------CCHH--HHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh---------hhHH--HHHhhhh----HHHHHHhhHHHHHHHhccc
Confidence 44555667778888888888888877541110000 0000 0000000 1234677788889999999
Q ss_pred hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 157 IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
++|++.++.++..+ |.+..+|..++.++...|++++|+..|+...+..+. +..+...+
T Consensus 84 ~~Al~~~~~al~~~-------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 84 PKAIDHASKVLKID-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred chhhhhhhcccccc-------chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 99999999988876 567888999999999999999999999988875322 44444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.95 E-value=5.8e-05 Score=60.99 Aligned_cols=82 Identities=11% Similarity=-0.029 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..|+++++.. |.+......+..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45667778888888888888888887753 3357778888888888888888888888888764 445556555555544
Q ss_pred hcCC
Q 047932 508 RNNE 511 (598)
Q Consensus 508 ~~g~ 511 (598)
+.+.
T Consensus 144 ~~~~ 147 (168)
T d1kt1a1 144 KAKE 147 (168)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=5.4e-05 Score=61.30 Aligned_cols=82 Identities=10% Similarity=-0.033 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
....+..+..++.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..|+++++.. +.+......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44567778888889999999999999988853 2357788888899999999999999999988864 446666666655
Q ss_pred HHHh
Q 047932 505 GFIR 508 (598)
Q Consensus 505 ~~~~ 508 (598)
+..+
T Consensus 154 ~~~~ 157 (169)
T d1ihga1 154 VKQK 157 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.92 E-value=0.00012 Score=59.40 Aligned_cols=125 Identities=9% Similarity=0.038 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh
Q 047932 78 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI 157 (598)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (598)
....+......|++++|.+.|.+++.. .++...-.. ... +.+...-..+.. .....+..++..+.+.|+++
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l~~~-~~~--~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALRE--WRGPVLDDL-RDF--QFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTTGGG-TTS--TTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CcccccccC-cch--HHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 344555667778888888888877754 121110000 000 000011111111 12346677888888999999
Q ss_pred HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHHH
Q 047932 158 VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD-----ENINPNVVT 218 (598)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 218 (598)
+|+..++++...+ +-+...|..++.+|.+.|+..+|++.|+++.. .|+.|+..+
T Consensus 85 ~Al~~~~~al~~~-------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 85 AVIAELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999988876 66788899999999999999999988888743 477777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=6.5e-05 Score=60.80 Aligned_cols=126 Identities=10% Similarity=-0.022 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh
Q 047932 78 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI 157 (598)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 157 (598)
+......+.+.|++++|+..|+++++.. +. . .+........... +.....+..+..+|.+.|+++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~--~~----~--------~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~~~~~ 94 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----S--------RAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQ 94 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----H--------HHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh--hh----h--------hhhhhhHHHHHhC-hhhHHHHHHHHHHHHhhcccc
Confidence 3455666788899999999998877420 00 0 0000000001100 123456777888888889999
Q ss_pred HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 158 VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF 226 (598)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (598)
+|+..++++++.+ |.+..+|..+..++...|++++|++.|+.+.+.... +......+..+.
T Consensus 95 ~Ai~~~~~al~~~-------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~ 155 (169)
T d1ihga1 95 GAVDSCLEALEID-------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhh-------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 9999999888876 567788888888888889999998888888875322 555555554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.90 E-value=0.00031 Score=56.48 Aligned_cols=126 Identities=9% Similarity=-0.045 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 047932 76 SSFNILFGCLAKNKHYDTVLSLFKRLNSTG---LFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR 152 (598)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (598)
..+...+..+.+.|++.+|+..|++++..- ...+. +.. .....+ ...+|+.+..+|.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~-----------~~~-~~~~~~-------~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE-----------KES-KASESF-------LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-----------HHH-HHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch-----------hhh-hhcchh-------HHHHHHhHHHHHHH
Confidence 455667777888899999999988876420 00000 000 000111 13456778888889
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSH 228 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 228 (598)
.|++++|+..++..+..+ |.+..+|..+..++...|++++|...|+.+....+ .+......+..+...
T Consensus 77 l~~~~~Ai~~~~~al~l~-------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQKK 144 (168)
T ss_dssp TTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHH
T ss_pred hhhcccchhhhhhhhhcc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 999999999999988876 66788888889999999999999999999887532 255555554444333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.77 E-value=2.2e-05 Score=68.53 Aligned_cols=117 Identities=10% Similarity=0.059 Sum_probs=84.9
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
.++.|++++|+..|+..++.+|. ++..+..++..|+..|++++|...|+++.+. .|+.......+.. .-.+....
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~--d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~-ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRH-LVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHH-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH-HHHhcccc
Confidence 45789999999999999999997 9999999999999999999999999999876 5654433322221 11122222
Q ss_pred HHHHH-------cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 129 TKLRV-------FGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 129 ~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
.+... .+.+++...+...+..+.+.|+.++|.+.++++.+..
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 22221 1212233445556777889999999999999988765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.74 E-value=0.00073 Score=54.64 Aligned_cols=73 Identities=8% Similarity=0.114 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 047932 427 ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA-----KGVEPDCVIFN 500 (598)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 500 (598)
..+..++.++...|++++|+..++++++.. +-+...|..++.++...|+..+|++.|+++.. .|+.|...+..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 456777888888888888888888888753 23677888888888888888888888888743 48888876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.72 E-value=6.6e-06 Score=71.89 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=86.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047932 437 CKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSS 516 (598)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 516 (598)
.+.|++++|+..+++.++.. +-|...+..++..++..|++++|.+.++.+.+.. +-+...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence 45688888888888888763 3357788888888888888888888888888753 334555555555555555444443
Q ss_pred hhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccchhhHhhh
Q 047932 517 RGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIH 575 (598)
Q Consensus 517 ~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~ 575 (598)
. ....... -..|+...... .....|+.++|...++++.++.|+.+..++...+
T Consensus 85 ~--~~~~~~~----~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~~f 141 (264)
T d1zbpa1 85 Q--GAATAKV----LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSF 141 (264)
T ss_dssp T--SCCCEEC----CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEEE
T ss_pred H--Hhhhhhc----ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccccCH
Confidence 3 2211111 11232222111 4456789999999999999999999887776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.67 E-value=0.00012 Score=57.14 Aligned_cols=73 Identities=8% Similarity=-0.087 Sum_probs=54.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC----------CHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 150 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG----------FVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
|-+.+.+++|+..|+...+.+ |.+..++..+..++...+ .+++|+..|+++.+.+.. +..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~ 78 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAV 78 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHH
Confidence 456777999999999999986 678889998988887543 456777777777765332 56677
Q ss_pred HHHHHHHHhcC
Q 047932 220 NSLIHCFSHAD 230 (598)
Q Consensus 220 ~~l~~~~~~~~ 230 (598)
..+..+|...|
T Consensus 79 ~~lG~~y~~~g 89 (145)
T d1zu2a1 79 WCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHcc
Confidence 77777766543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.49 E-value=0.00017 Score=57.32 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=75.2
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPP----------VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 115 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 115 (598)
|....+.|++++|+..|+++++..|..++ ..+|+.+..+|.+.|++++|+..+++.++.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~----------- 84 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----------- 84 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc-----------
Confidence 44456789999999999999987665332 457889999999999999999999887642
Q ss_pred HHhccHHHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047932 116 LINCRIMEAAALFTKLRVFGCE---PDVFTYNTLINGLCRTGHTIVALNLFEEMANG 169 (598)
Q Consensus 116 ll~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 169 (598)
+.+....... ....+++.+..+|...|++++|+..|++..+.
T Consensus 85 ------------~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 85 ------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp ------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222111100 01235778899999999999999999998764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00086 Score=47.58 Aligned_cols=83 Identities=12% Similarity=-0.007 Sum_probs=60.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..++..+.+.|++.+|+..|++..+..+...........++..+..++.+.|++++|++.++++.+..+. +..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence 445566889999999999999999999876532111111222567888999999999999999999998886432 4555
Q ss_pred HHHH
Q 047932 219 YNSL 222 (598)
Q Consensus 219 ~~~l 222 (598)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.26 E-value=0.0036 Score=49.22 Aligned_cols=92 Identities=13% Similarity=-0.014 Sum_probs=56.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCC-C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCC-
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYE-L----------DIISYSCLIDGLCKIGKLETAWELFQSLSRV-----GLLPN- 460 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~- 460 (598)
...+...|++++|+..|++.+..... | ...+|+.+..+|...|++++|...+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445566677777666666532100 1 1345667777777777777777777776541 11122
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 461 ----VVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 461 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
...++.+..+|...|++++|+..|+++++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456677777888888888888877764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0061 Score=42.91 Aligned_cols=60 Identities=13% Similarity=-0.029 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 431 CLIDGLCKIGKLETAWELFQSLSRV-----GLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
.+...+.+.|++++|+..|++..+. ...++ ..+++.+..++.+.|++++|+..++++++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3444445555555555555544331 00111 334555555555555555555555555553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.69 E-value=0.019 Score=43.28 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=7.8
Q ss_pred ChhHHHHHHHHHHhc
Q 047932 155 HTIVALNLFEEMANG 169 (598)
Q Consensus 155 ~~~~A~~~~~~~~~~ 169 (598)
+.++|.+.|++..+.
T Consensus 74 d~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 74 DLRKAAQYYSKACGL 88 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhhhhcc
Confidence 445555555555543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.63 E-value=0.047 Score=41.01 Aligned_cols=81 Identities=10% Similarity=-0.084 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 047932 405 GFVLEALELFCAIGNSKYELDIISYSCLIDGLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQ 476 (598)
Q Consensus 405 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 476 (598)
.+.++|+.++++..+.+ ++.....|...|.. ..+.++|.++|++..+.| +......|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45566666666666554 44444445555543 345667777777766654 33444455555554 346
Q ss_pred HHHHHHHHHHHHHCC
Q 047932 477 MDKAHDLFLDMEAKG 491 (598)
Q Consensus 477 ~~~A~~~~~~~~~~~ 491 (598)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 677777777776665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.69 Score=42.87 Aligned_cols=203 Identities=9% Similarity=-0.042 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHH----HHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 300 GRVNHAKELFVSMESNGCMHDVVSYTTLING----YCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 300 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
.+.+.+...+........ .+...+..+-.. ....+..+.+...+......+. +.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 456667776666654321 122222222222 2234555666666665554432 333333444445566777777
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047932 376 LKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV 455 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (598)
...+..+.... .......--+..++...|+.+.|..+|..+... ++ .|..|... +.|..-. +...
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~-------~~~~ 369 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEYE-------LKID 369 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCCC-------CCCC
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--HcCCCCC-------CCcC
Confidence 77776664331 223344445566777777777777777777632 23 23322221 1111000 0000
Q ss_pred CCC--CC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 456 GLL--PN-VVT---YNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 456 ~~~--p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
.+. +. ... -...+..+...|....|...+..+... .+......+.....+.|.++.|+. ...+..
T Consensus 370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~--a~~~~~ 440 (450)
T d1qsaa1 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQ--ATIAGK 440 (450)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHH--HHHHTT
T ss_pred CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHH--HHHHHH
Confidence 000 00 000 112345566889999999999888753 256667777888889999988888 766663
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.82 E-value=0.43 Score=34.13 Aligned_cols=63 Identities=19% Similarity=0.142 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
+...++.+.++|.-++-.++++.+.+.+ ++++.....+..+|.+.|...++-+++.++-+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3344445555555555555555554433 45555555555555555555555555555555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.57 E-value=0.5 Score=33.77 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
.+...+..+..+|.-++..++++.+.+.+ .+++.....+..+|.+.|...++-+++.++.+.|.
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34455566667777777777777776654 66777777777788888888888877777777664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=0.48 Score=34.17 Aligned_cols=67 Identities=12% Similarity=0.013 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 423 ELDIISYSCLIDGLCKIGK---LETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
.++..+-..+..++++..+ .++++.+++++.+.+ +.+ ...+..|.-+|.+.|++++|.++++.+++.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3455555566666665543 456677777766532 112 244555666677777777777777777764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.89 E-value=0.45 Score=34.32 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCC
Q 047932 458 LPNVVTYNIMIHGLCNDG---QMDKAHDLFLDMEAKGVEPDC-VIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQ 533 (598)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 533 (598)
.|+..+-..+..++++.. +.++++.+++++.+.+ +.+. ..+..+..+|.+.|++++|.+ .++.+++. .
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~--~~~~~L~i-----e 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKR--YVDTLFEH-----E 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHH-----C
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHcc-----C
Confidence 456666667777777654 4567888888887643 3343 566777778888888888888 88888854 6
Q ss_pred CChHHHHH
Q 047932 534 PKTLICSI 541 (598)
Q Consensus 534 p~~~~~~~ 541 (598)
|+......
T Consensus 104 P~n~qA~~ 111 (124)
T d2pqrb1 104 RNNKQVGA 111 (124)
T ss_dssp TTCHHHHH
T ss_pred CCcHHHHH
Confidence 76654443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.14 E-value=9.3 Score=34.76 Aligned_cols=203 Identities=10% Similarity=-0.035 Sum_probs=128.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047932 265 GKMEEASRLLDLMIQIGVHPNTFVYNTLM----DGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEA 340 (598)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 340 (598)
.+.+.+..++......... +......+- ......+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 5778888888887664322 222222222 22334566788888888777664 3444444556666778999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 047932 341 LNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS 420 (598)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 420 (598)
...+..+... ........--+..++...|+.+.|...|..+... ++ .|..+. ..+.|..-. +...
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LA--a~~Lg~~~~-------~~~~ 369 (450)
T d1qsaa1 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEYE-------LKID 369 (450)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCCC-------CCCC
T ss_pred HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHH--HHHcCCCCC-------CCcC
Confidence 9999988654 2234555567788999999999999999998753 33 333322 223332100 0000
Q ss_pred CC--CCC-HH---HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 421 KY--ELD-II---SYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 421 ~~--~~~-~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
.. .+. .. .-..-+..+...|+...|...|..+... .+......+.....+.|.++.|+....+..
T Consensus 370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 00 001 10 1123456677899999999999988764 245566677888889999999998877653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.95 E-value=3.1 Score=28.00 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 442 LETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.-++.+-++.+....+.|++....+-+.+|.+-+++..|+++|+....
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555555666666666666666666666666666665554
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