Citrus Sinensis ID: 047939

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
VSFFLHFSFPIILAEFSCIPVGLSAILVSNHTKYQSALEKMSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILVVVLAA
ccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHc
ccEEEEcccHHHEEEcccccccHHHHHEcccHHHHHHHHHccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
vsfflhfsfpiilaefscipvglSAILVSNHTKYQSALEKMSfqdleagrpvsslrrnlvngkqdstQAVASGIFQINTAVSTFQRLVNtlgtpkdtpeLREKIHKTRLHIGQLVKDTSAKLkqasetdhhaqvsaDKKIADAKLAKDFQAVLKEFQKAQRLAAEretaytpfvpqavlpssytaheldissdRSAEQHALLVESRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILVVVLAA
VSFFLHFSFPIILAEFSCIPVGLSAILVSNHTKYQSALEKMSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTlgtpkdtpelrEKIHKTRLHIGQLVKDTSAKLKQasetdhhaqvsadKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILVVVLAA
VSFFLHFSFPIILAEFSCIPVGLSAILVSNHTKYQSALEKMSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSadkkiadaklakdFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDneiafneaiieerelgiqeiqqqigeVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTClllvifgivllilvvvlAA
**FFLHFSFPIILAEFSCIPVGLSAILVSNHTKYQSA*******************************AVASGIFQINTAVSTFQRLVNTLG**************TRLHIGQ*******************************LAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYT***************ALLVESRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIE************************SLTCLLLVIFGIVLLILVVVL**
VSFFLHFSFPIILAEFSCIPVGLSAI****************************************TQAVASGIFQINTAVS*************************RLHIGQ************************************************************************************************************AIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILVVVLAA
VSFFLHFSFPIILAEFSCIPVGLSAILVSNHTKYQSALEKMSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTS*****************DKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENS********************NSSLTCLLLVIFGIVLLILVVVLAA
VSFFLHFSFPIILAEFSCIPVGLSAILVSNHTKYQSALEKMSF*D**A***************QDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPF*******************************SRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILVVVLAA
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VSFFLHFSFPIILAEFSCIPVGLSAILVSNHTKYQSALEKMSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILVVVLAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
P93654268 Syntaxin-22 OS=Arabidopsi yes no 0.815 0.955 0.790 1e-116
O04378255 Syntaxin-23 OS=Arabidopsi no no 0.770 0.949 0.759 3e-94
Q39233279 Syntaxin-21 OS=Arabidopsi no no 0.828 0.931 0.643 8e-90
Q9C615416 Putative syntaxin-24 OS=A no no 0.668 0.504 0.545 3e-56
Q54JY7356 Syntaxin-7A OS=Dictyostel yes no 0.777 0.685 0.307 3e-28
O70439261 Syntaxin-7 OS=Mus musculu yes no 0.767 0.923 0.325 7e-28
Q5R602261 Syntaxin-7 OS=Pongo abeli yes no 0.707 0.850 0.343 1e-27
Q3ZBT5261 Syntaxin-7 OS=Bos taurus yes no 0.707 0.850 0.343 2e-27
O15400261 Syntaxin-7 OS=Homo sapien yes no 0.732 0.881 0.324 2e-26
O70257261 Syntaxin-7 OS=Rattus norv yes no 0.707 0.850 0.343 6e-25
>sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1 Back     alignment and function desciption
 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/262 (79%), Positives = 232/262 (88%), Gaps = 6/262 (2%)

Query: 41  MSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPEL 100
           MSFQDLE+GR  S+  R    G+QDSTQAVASGIFQINT VSTFQRLVNTLGTPKDTPEL
Sbjct: 1   MSFQDLESGRGRST--RKFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPEL 58

Query: 101 REKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQ 160
           REK+HKTRLHIGQLVKDTSAKLK+ASETDH + V+  KKIADAKLA+DFQAVLKEFQKAQ
Sbjct: 59  REKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQ 118

Query: 161 RLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFN 220
           + AAERET YTPFVPQ+ LPSSYTA E+    D+  EQ A L ES+RQE+VLLDNEIAFN
Sbjct: 119 QTAAERETTYTPFVPQSALPSSYTAGEV----DKVPEQRAQLQESKRQELVLLDNEIAFN 174

Query: 221 EAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQL 280
           EA+IEERE GIQEI QQIGEVNE+FKDLAVLV++QG +IDDIG+HI+NS+ AT+QGKSQL
Sbjct: 175 EAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQL 234

Query: 281 VKAAKTQRSNSSLTCLLLVIFG 302
           V+AAKTQ+SNSSLTCLLLVIFG
Sbjct: 235 VQAAKTQKSNSSLTCLLLVIFG 256
May provide the t-SNARE function in the vacuolar assembly.
Arabidopsis thaliana (taxid: 3702)
>sp|O04378|SYP23_ARATH Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=1 SV=1 Back     alignment and function description
>sp|Q39233|SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1 Back     alignment and function description
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1 Back     alignment and function description
>sp|Q54JY7|STX7A_DICDI Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1 Back     alignment and function description
>sp|O70439|STX7_MOUSE Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3 Back     alignment and function description
>sp|Q5R602|STX7_PONAB Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3 Back     alignment and function description
>sp|Q3ZBT5|STX7_BOVIN Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1 Back     alignment and function description
>sp|O15400|STX7_HUMAN Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4 Back     alignment and function description
>sp|O70257|STX7_RAT Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
224138992274 predicted protein [Populus trichocarpa] 0.821 0.941 0.883 1e-130
224074317261 predicted protein [Populus trichocarpa] 0.831 1.0 0.862 1e-128
225427138274 PREDICTED: syntaxin-22 [Vitis vinifera] 0.834 0.956 0.854 1e-127
449462039274 PREDICTED: syntaxin-22-like [Cucumis sat 0.834 0.956 0.843 1e-125
356496277273 PREDICTED: syntaxin-22-like [Glycine max 0.831 0.956 0.851 1e-125
388505230273 unknown [Lotus japonicus] 0.831 0.956 0.847 1e-124
356531439273 PREDICTED: syntaxin-22-like [Glycine max 0.831 0.956 0.835 1e-123
255636806273 unknown [Glycine max] 0.831 0.956 0.874 1e-121
351723149273 syntaxin [Glycine max] gi|22597174|gb|AA 0.831 0.956 0.870 1e-120
116788059273 unknown [Picea sitchensis] gi|148909620| 0.831 0.956 0.809 1e-120
>gi|224138992|ref|XP_002326741.1| predicted protein [Populus trichocarpa] gi|222834063|gb|EEE72540.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/258 (88%), Positives = 244/258 (94%)

Query: 41  MSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPEL 100
           MSFQDLEAGRP++S RR L+NGKQD+TQAVASGIFQINTAVSTFQRLVNTLGTPKDTPEL
Sbjct: 1   MSFQDLEAGRPLASSRRELINGKQDATQAVASGIFQINTAVSTFQRLVNTLGTPKDTPEL 60

Query: 101 REKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQ 160
           REK+HKTRLHIGQLVKDTSA+LKQASETDH+A VS  KKIADAKLAKDFQAVLKEFQKAQ
Sbjct: 61  REKLHKTRLHIGQLVKDTSARLKQASETDHYAGVSQSKKIADAKLAKDFQAVLKEFQKAQ 120

Query: 161 RLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFN 220
           RLAAERETAYTPFVPQAVLPSSYTA E+D+S D+S EQ A+LVESRRQEV+LLDNEIAFN
Sbjct: 121 RLAAERETAYTPFVPQAVLPSSYTASEIDLSFDKSPEQRAILVESRRQEVLLLDNEIAFN 180

Query: 221 EAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQL 280
           EA+IEERE GI EIQQQIGEVNE+FKDLAVLVHEQGT+IDDIGSHIENSQ ATAQGKS L
Sbjct: 181 EAVIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSHIENSQAATAQGKSHL 240

Query: 281 VKAAKTQRSNSSLTCLLL 298
           VKAAKTQRSNSSL CLL+
Sbjct: 241 VKAAKTQRSNSSLACLLM 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224074317|ref|XP_002304351.1| predicted protein [Populus trichocarpa] gi|222841783|gb|EEE79330.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225427138|ref|XP_002278649.1| PREDICTED: syntaxin-22 [Vitis vinifera] gi|147791633|emb|CAN75135.1| hypothetical protein VITISV_018887 [Vitis vinifera] gi|297742058|emb|CBI33845.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462039|ref|XP_004148749.1| PREDICTED: syntaxin-22-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356496277|ref|XP_003516995.1| PREDICTED: syntaxin-22-like [Glycine max] Back     alignment and taxonomy information
>gi|388505230|gb|AFK40681.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356531439|ref|XP_003534285.1| PREDICTED: syntaxin-22-like [Glycine max] Back     alignment and taxonomy information
>gi|255636806|gb|ACU18736.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|351723149|ref|NP_001235989.1| syntaxin [Glycine max] gi|22597174|gb|AAN03474.1| syntaxin [Glycine max] Back     alignment and taxonomy information
>gi|116788059|gb|ABK24740.1| unknown [Picea sitchensis] gi|148909620|gb|ABR17901.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TAIR|locus:3356150268 VAM3 "VACUOLAR MORPHOLOGY 3" [ 0.792 0.929 0.654 3.8e-78
TAIR|locus:2129406262 SYP23 "syntaxin of plants 23" 0.770 0.923 0.620 6.1e-71
TAIR|locus:2148960279 SYP21 "syntaxin of plants 21" 0.808 0.910 0.524 2.7e-59
TAIR|locus:2028336416 ATSYP24 [Arabidopsis thaliana 0.582 0.439 0.497 3e-37
UNIPROTKB|Q3ZBT5261 STX7 "Syntaxin-7" [Bos taurus 0.707 0.850 0.3 1.9e-21
UNIPROTKB|O15400261 STX7 "Syntaxin-7" [Homo sapien 0.707 0.850 0.3 1.9e-21
RGD|619747261 Stx7 "syntaxin 7" [Rattus norv 0.707 0.850 0.3 1.9e-21
UNIPROTKB|F1S3P8261 STX7 "Uncharacterized protein" 0.707 0.850 0.295 6.3e-21
MGI|MGI:1858210261 Stx7 "syntaxin 7" [Mus musculu 0.707 0.850 0.3 1e-20
UNIPROTKB|E2R4Q2261 STX7 "Uncharacterized protein" 0.707 0.850 0.291 2.1e-20
TAIR|locus:3356150 VAM3 "VACUOLAR MORPHOLOGY 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 167/255 (65%), Positives = 191/255 (74%)

Query:    41 MSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPEL 100
             MSFQDLE+GR  S+ + N   G+QDSTQAVASGIFQINT VSTFQRLVNTLGTPKDTPEL
Sbjct:     1 MSFQDLESGRGRSTRKFN--GGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPEL 58

Query:   101 REKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQ 160
             REK+HKTRLHIGQLVKDTSAKLK+ASETDH + V+             FQAVLKEFQKAQ
Sbjct:    59 REKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQ 118

Query:   161 RLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDXXXXXX 220
             + AAERET YTPFVPQ+ LPSSYTA E+D    +  EQ A L ES+RQE+VLLD      
Sbjct:   119 QTAAERETTYTPFVPQSALPSSYTAGEVD----KVPEQRAQLQESKRQELVLLDNEIAFN 174

Query:   221 XXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQL 280
                                 VNE+FKDLAVLV++QG +IDDIG+HI+NS+ AT+QGKSQL
Sbjct:   175 EAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQL 234

Query:   281 VKAAKTQRSNSSLTC 295
             V+AAKTQ+SNSSLTC
Sbjct:   235 VQAAKTQKSNSSLTC 249
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0005770 "late endosome" evidence=TAS
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0030140 "trans-Golgi network transport vesicle" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009660 "amyloplast organization" evidence=IMP
GO:0005773 "vacuole" evidence=IDA
GO:0010118 "stomatal movement" evidence=IMP
GO:0000325 "plant-type vacuole" evidence=IDA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=IGI;RCA
GO:0009556 "microsporogenesis" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0016197 "endosomal transport" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0052543 "callose deposition in cell wall" evidence=RCA
GO:0009959 "negative gravitropism" evidence=IMP
TAIR|locus:2129406 SYP23 "syntaxin of plants 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148960 SYP21 "syntaxin of plants 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028336 ATSYP24 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBT5 STX7 "Syntaxin-7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O15400 STX7 "Syntaxin-7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|619747 Stx7 "syntaxin 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1S3P8 STX7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1858210 Stx7 "syntaxin 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4Q2 STX7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P93654SYP22_ARATHNo assigned EC number0.79000.81520.9552yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 3e-24
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 3e-18
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 8e-17
pfam0573962 pfam05739, SNARE, SNARE domain 9e-16
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 1e-11
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 4e-10
pfam00804103 pfam00804, Syntaxin, Syntaxin 1e-05
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 5e-05
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score = 95.4 bits (238), Expect = 3e-24
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)

Query: 68  QAVASGIFQINTAVSTFQRLVNTLGTPKD-TPELREKIHKTRLHIGQLVKDTSAKLKQAS 126
           + +   I +I+  V   Q+L + L T  D  PEL++++      I +L K+   KLK+  
Sbjct: 9   EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELE 68

Query: 127 ETDHHAQV---SAD---KKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLP 180
           E++   +    S+    +K   + L+K F  V+ EF KAQR   ER         +    
Sbjct: 69  ESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEIT-G 127

Query: 181 SSYTAHELD 189
              T  EL+
Sbjct: 128 GEATDEELE 136

Length = 151
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 100.0
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.96
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.96
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.8
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 99.62
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.55
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.52
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.49
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.38
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.28
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.16
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 98.92
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 98.58
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.7
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.64
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.29
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 96.99
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.92
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 96.62
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 96.21
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 95.44
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 94.92
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 94.18
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 93.97
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 93.11
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 89.58
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 89.38
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 87.99
PF1116698 DUF2951: Protein of unknown function (DUF2951); In 87.77
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 86.64
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 83.56
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 83.2
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 81.38
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 81.13
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-41  Score=307.02  Aligned_cols=246  Identities=42%  Similarity=0.559  Sum_probs=199.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHH
Q 047939           61 NGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKI  140 (314)
Q Consensus        61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~  140 (314)
                      .+|..++++|+..|+.|+..+..|.+.+..+||+.|++++|++++.....+..+++.+...|+++..... ....+..+.
T Consensus        17 ~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-~~~~~~~k~   95 (269)
T KOG0811|consen   17 FDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL-ESDLRQLKI   95 (269)
T ss_pred             CcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHH
Confidence            5799999999999999999999999999999999999999999999999999999999999999998876 344588999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccCccchHHHHHHHHHHHHH-HHHHHhh-Hhh
Q 047939          141 ADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQ-EVVLLDN-EIA  218 (314)
Q Consensus       141 ~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~~~q-~~~~~~~-E~~  218 (314)
                      +.++|.++|..++++|+++|+...+++|  .+..++.+..+.....+    +....+........+++ +...... +++
T Consensus        96 ~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~~~a~~s~~s~~~~~~----~~~~~~~~~~~~~~~~q~e~~~q~~e~~~  169 (269)
T KOG0811|consen   96 QLDKLVDEFSAALKEFQKVQRKSAEREK--IPMVARGSQNSQQLDEE----SPRVDELSNNGSQSQQQLEEQAQDNEILE  169 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhc--ccccccccccchhhhhh----hhhhhhhhccchhhhhHHHHHHhhhhhhh
Confidence            9999999999999999999999999988  33222211111000000    00000000001111111 2222223 367


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 047939          219 FNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLL  298 (314)
Q Consensus       219 ~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~  298 (314)
                      ++..++++|+++|++||++|.|||+||+|||.||++||++||+||+||+++..||++|+.+|.+|.+||+++|||+||++
T Consensus       170 ~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll  249 (269)
T KOG0811|consen  170 YQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILL  249 (269)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHh
Q 047939          299 VIFGIVLLILVVVLA  313 (314)
Q Consensus       299 ii~~Ivl~Ivl~vv~  313 (314)
                      ++++++++|+.++++
T Consensus       250 ~v~~~v~lii~l~i~  264 (269)
T KOG0811|consen  250 LVGGPVGLIIGLIIA  264 (269)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888777777654

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 1e-06
1gl2_B65 Crystal Structure Of An Endosomal Snare Core Comple 1e-06
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure 
Iteration: 1

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQR 288
           VN++FKDLA+++H+QG +ID I +++E+S+V   +   QL +AA  Q+
Sbjct: 18  VNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQK 65
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex Length = 65 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 7e-34
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 2e-30
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 2e-30
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 2e-23
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 1e-20
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 4e-20
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 8e-20
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 5e-19
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 3e-18
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 6e-18
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  124 bits (311), Expect = 7e-34
 Identities = 48/269 (17%), Positives = 99/269 (36%), Gaps = 15/269 (5%)

Query: 36  SALEKMSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNT-LGTP 94
             L      D +    V+  R   ++   +  + +   I +I   V   +R  +  L +P
Sbjct: 6   QELRTAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASP 65

Query: 95  KDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSAD-------KKIADAKLAK 147
               + +E++ +    I +      +KLK   ++    +           +K   + L++
Sbjct: 66  NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSR 125

Query: 148 DFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRR 207
            F  V+ E+   Q    ER         +    ++ +    D+    +    A  +    
Sbjct: 126 KFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDS 185

Query: 208 QEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIE 267
                  +EI       E R   I +++  I E++++F D+A+LV  QG +ID I  ++E
Sbjct: 186 SISKQALSEI-------ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVE 238

Query: 268 NSQVATAQGKSQLVKAAKTQRSNSSLTCL 296
           ++     +  S   KA K Q        +
Sbjct: 239 HAVDYVERAVSDTKKAVKYQSKARRKKIM 267
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.97
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.96
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.92
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.92
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.9
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.87
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.86
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.82
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.81
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.81
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 99.79
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.38
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.25
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 99.14
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.55
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.39
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.24
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 97.22
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.17
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 97.11
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 96.59
3b5n_D64 Protein transport protein SEC9; snare complex, syn 96.27
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.15
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 95.7
3b5n_C70 Protein transport protein SEC9; snare complex, syn 95.3
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 94.65
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 93.03
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 90.19
2c5k_T95 Syntaxin TLG1, T-snare affecting A late golgi comp 89.68
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 87.0
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 85.39
1sfc_A96 VAMP 2, protein (synaptobrevin 2); membrane fusion 84.66
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 83.84
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 82.7
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 82.36
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 81.8
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=1.1e-35  Score=271.86  Aligned_cols=226  Identities=19%  Similarity=0.243  Sum_probs=160.2

Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------cC
Q 047939           59 LVNGKQDSTQAVASGIFQINTAVSTFQRLVNTL-GTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASET-------DH  130 (314)
Q Consensus        59 ~~~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L-~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~-------~~  130 (314)
                      +.++|...+++|...|..|+.++.+|+++++.+ +++.+.+.++.+|+.++.+++.+++.|+.+|+.|...       .+
T Consensus        29 ~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~  108 (267)
T 1dn1_B           29 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR  108 (267)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            456899999999999999999999999999965 4566667899999999999999999999999999764       22


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC-CCCCCCCCCcccccccccCccchHHHHHHHHHH
Q 047939          131 HAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAY----TP-FVPQAVLPSSYTAHELDISSDRSAEQHALLVES  205 (314)
Q Consensus       131 ~~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~  205 (314)
                      +++..|++++++..|+++|++++.+|+.+|..|++++|..    .. ..+.++   ..+.++.--.++...++++++.++
T Consensus       109 ~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~t---deeie~~ie~g~~~~f~q~~l~~~  185 (267)
T 1dn1_B          109 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTT---SEELEDMLESGNPAIFASGIIMDS  185 (267)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHTCSSCTTTTTCCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCC---HHHHHHHHhCCcHHHHHHHHHHhh
Confidence            2345589999999999999999999999999999987642    22 233221   111100000111112332222111


Q ss_pred             HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939          206 RRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAK  285 (314)
Q Consensus       206 ~~q~~~~~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~  285 (314)
                        ++.       ......|++||++|.+||++|.|||+||+||++||++||++||+||+||+.+..||++|..+|.+|.+
T Consensus       186 --~~~-------~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~  256 (267)
T 1dn1_B          186 --SIS-------KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK  256 (267)
T ss_dssp             --HHH-------HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--------
T ss_pred             --HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              110       11224599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcchhhHHH
Q 047939          286 TQRSNSSLTCL  296 (314)
Q Consensus       286 ~qk~~rk~~~~  296 (314)
                      |||++|||+||
T Consensus       257 ~q~~~rkk~~~  267 (267)
T 1dn1_B          257 YQSKARRKKIM  267 (267)
T ss_dssp             -----------
T ss_pred             HHHHhcCcccC
Confidence            99999999986
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 1e-18
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.2 bits (197), Expect = 1e-18
 Identities = 22/192 (11%), Positives = 62/192 (32%), Gaps = 4/192 (2%)

Query: 64  QDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLK 123
            +    +   + + +  ++    L   L T  +  +     H     + Q          
Sbjct: 8   MNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKN 67

Query: 124 QASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSY 183
           +            +K+       + F  ++++++       E            + P + 
Sbjct: 68  EIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEAT 127

Query: 184 TAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNE 243
                   SD   +Q  +  ++        + + A  E  ++ R   + ++++ + E+ +
Sbjct: 128 EDEVEAAISDVGGQQ--IFSQALLNANRRGEAKTALAE--VQARHQELLKLEKSMAELTQ 183

Query: 244 VFKDLAVLVHEQ 255
           +F D+  LV EQ
Sbjct: 184 LFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.83
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.35
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 98.08
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=3.1e-20  Score=158.36  Aligned_cols=183  Identities=15%  Similarity=0.203  Sum_probs=133.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhH
Q 047939           62 GKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKD---TPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADK  138 (314)
Q Consensus        62 ~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D---~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~  138 (314)
                      .|.+.+++|...|..|+.++..|.+++..++++.+   ...++.+++.++.+++.+++.|++.++.+....   +..+.+
T Consensus         6 ~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~---~~~~~~   82 (196)
T d1fioa_           6 GFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDTNK   82 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cchHHH
Confidence            48999999999999999999999999998765543   467889999999999999999999999987764   456889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCcccccccccCccchHHHHHHHHHHHHHHHHHH
Q 047939          139 KIADAKLAKDFQAVLKEFQKAQRLAAERETAYTP-----FVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLL  213 (314)
Q Consensus       139 k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~~~q~~~~~  213 (314)
                      ++++.+|+++|..++..|+.+|..|.++.|....     ..+... +...+   ..... . ...+.+.... ....  .
T Consensus        83 ~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~-~~~~~---~~~~~-~-~~~~~~~~~~-~~~~--~  153 (196)
T d1fioa_          83 QAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEAT-EDEVE---AAISD-V-GGQQIFSQAL-LNAN--R  153 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC-HHHHH---HHTSH-H-HHHHHHHHHT-C------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc-chhhh---Hhhcc-c-cchHHHHHHH-HHHH--H
Confidence            9999999999999999999999999987765332     222210 10000   00000 0 0010111100 0000  0


Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047939          214 DNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQG  256 (314)
Q Consensus       214 ~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQG  256 (314)
                      ..+.......+++|+++|.+||++|.|||+||+|||+||++|.
T Consensus       154 ~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         154 RGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            1122334566999999999999999999999999999999984
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure