Citrus Sinensis ID: 047948

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIWPT
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccEEEEccccccccccccEEEccccccccccccccccccEEcccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcccccEEEEEcccccccccccHHHHcccccccEEEEccccccccccHHHcccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
fsldvssnsieEGHALVKWKASLKVHSRSLLHSWFLSSvnvtkispcawsgihcnhagrvVGINLTsmslngtllefpfssfphlaYLVLYNNELFYIILPQItnklsgqipseiglLTHLTVLHISrnqlngsipqevgQLTFLNHLILDLIFLIFWMVQSLVLLAIWPT
Flexible Loop (DISEMBL)
fsldvssnsieEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIWPT
Low Complexity Region (SEG)
FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIWPT
Disordered region (IsUnstruct)
*************HALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIW**
Disordered Region (DISOPRED)
FSLD***NSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIW**
Disordered Region (DISEMBL)
FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIWPT
Disordered Region (DISPRO)
FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSL********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIWPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.812	0.133	0.373	3e-19
Q9LP24	1120	Probable leucine-rich rep	no	no	0.818	0.125	0.357	3e-17
Q94F62	615	BRASSINOSTEROID INSENSITI	no	no	0.812	0.226	0.333	3e-12
C0LGR3	1091	Probable LRR receptor-lik	no	no	0.777	0.121	0.314	4e-12
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.695	0.107	0.342	3e-11
Q8LPS5	601	Somatic embryogenesis rec	no	no	0.760	0.216	0.320	3e-11
C0LGF4	591	LRR receptor-like serine/	no	no	0.859	0.248	0.311	4e-11
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.643	0.088	0.336	6e-11
Q9SKG5	620	Somatic embryogenesis rec	no	no	0.713	0.196	0.309	9e-11
Q9C9N5	685	Probable inactive leucine	no	no	0.695	0.173	0.343	1e-10

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 19/158 (12%)

Query: 7   SNSIEEGHALVKWKASLKVH-SRSLLHSWFLSSVNVTKISPC-AWSGIHCNHAGRVVGIN 64
           S ++EE +AL+KWK++     S S L SW    VN    S C +W G+ C+  G ++ +N
Sbjct: 45  SATVEEANALLKWKSTFTNQTSSSKLSSW----VNPNTSSFCTSWYGVACS-LGSIIRLN 99

Query: 65  LTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ------------ITNKLSGQIP 112
           LT+  + GT  +FPFSS P+L ++ L  N     I P               N+L G+IP
Sbjct: 100 LTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIP 159

Query: 113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
            E+G L++L  LH+  N+LNGSIP E+G+LT +  + +
Sbjct: 160 PELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAI 197

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 81/154 (52%), Gaps = 14/154 (9%)

Query: 9   SIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSM 68
           +I E +AL+KWK++    S+  L SW   +   T  S  +W G+ CN  G +  +NLT+ 
Sbjct: 30  TIAEANALLKWKSTFTNSSK--LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNT 87

Query: 69  SLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIG 116
            + GT  +FPF S  +LAY+ L  N L   I PQ             TN L+G+I   +G
Sbjct: 88  GIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLG 147

Query: 117 LLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
            L +LTVL++ +N L   IP E+G +  +  L L
Sbjct: 148 NLKNLTVLYLHQNYLTSVIPSELGNMESMTDLAL 181

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 23/162 (14%)

Query: 3   LDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVG 62
           L VS N+  EG AL   K SL      +L SW     + T ++PC W  + CN    V  
Sbjct: 21  LRVSGNA--EGDALSALKNSL-ADPNKVLQSW-----DATLVTPCTWFHVTCNSDNSVTR 72

Query: 63  INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQ 110
           ++L + +L+G L+       P+L YL LY+N +   I  Q+             N LSG 
Sbjct: 73  VDLGNANLSGQLV-MQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGP 131

Query: 111 IPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
           IPS +G L  L  L ++ N L+G IP+ +  +  L   +LDL
Sbjct: 132 IPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQ--VLDL 171

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGR3|Y4265_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 75/181 (41%), Gaps = 48/181 (26%)

Query: 1   FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRV 60
           FSLD      ++G AL+ WK+ L + S     SW     +V   SPC W G+ CN  G V
Sbjct: 23  FSLD------QQGQALLSWKSQLNI-SGDAFSSW-----HVADTSPCNWVGVKCNRRGEV 70

Query: 61  VGINLTSMSLNGTL------------------------LEFPFSSFPHLAYLVLYNNELF 96
             I L  M L G+L                        +      F  L  L L +N L 
Sbjct: 71  SEIQLKGMDLQGSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLS 130

Query: 97  YIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTF 144
             I  +I            TN L G IP EIG L+ L  L +  N+L+G IP+ +G+L  
Sbjct: 131 GDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFDNKLSGEIPRSIGELKN 190

Query: 145 L 145
           L
Sbjct: 191 L 191

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 24/143 (16%)

Query: 12  EGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAG---RVVGINLTSM 68
           EG  L++ K+   V ++  L +W     N     PC W+G+ C++      V+ +NL+SM
Sbjct: 30  EGQYLLEIKSKF-VDAKQNLRNW-----NSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSM 83

Query: 69  SLNGTLLEFPFSSFPHLAYLV-LYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHIS 127
            L+G L        P +  LV L   +L Y       N LSG+IP EIG  + L +L ++
Sbjct: 84  VLSGKL-------SPSIGGLVHLKQLDLSY-------NGLSGKIPKEIGNCSSLEILKLN 129

Query: 128 RNQLNGSIPQEVGQLTFLNHLIL 150
            NQ +G IP E+G+L  L +LI+
Sbjct: 130 NNQFDGEIPVEIGKLVSLENLII 152

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPS5|SERK5_ARATH Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 23/153 (15%)

Query: 14  HALVKWKASLKV--HSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLN 71
            AL+  ++SL    H+ ++L SW     N T ++PC+W  + CN    V  ++L S +L+
Sbjct: 29  DALIALRSSLSSGDHTNNILQSW-----NATHVTPCSWFHVTCNTENSVTRLDLGSANLS 83

Query: 72  GTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLT 119
           G L+    +  P+L YL L+NN +   I  ++             N +SG IPS +G L 
Sbjct: 84  GELVP-QLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLG 142

Query: 120 HLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
            L  L +  N L+G IP+    LT L   +LD+
Sbjct: 143 KLRFLRLYNNSLSGEIPR---SLTALPLDVLDI 172

Serine/threonine-kinase of unknown function.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 20/167 (11%)

Query: 12  EGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCN-HAGRVVGINLTSMSL 70
           +G AL+ ++ ++   S S +H W     +     PC W+G+ C+    RV+ +NLT   +
Sbjct: 33  DGEALLSFRNAV-TRSDSFIHQWRPEDPD-----PCNWNGVTCDAKTKRVITLNLTYHKI 86

Query: 71  NGTLLEFPFSSFPHLAYLVLYNNELFYII---------LPQI---TNKLSGQIPSEIGLL 118
            G L         HL  L+L+NN L+  I         L +I   +N  +G IP+E+G L
Sbjct: 87  MGPLPP-DIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDL 145

Query: 119 THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVL 165
             L  L +S N L+G IP  +GQL  L++  +   FL+  +    VL
Sbjct: 146 PGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSNNFLVGQIPSDGVL 192

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 15/125 (12%)

Query: 40  NVTKISPCAWSGIHCNHAG--RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY 97
           N   I+ C+W+G+ C++ G  RV+ +NLT + L G++  + F  F +L +L L +N L  
Sbjct: 51  NSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPW-FGRFDNLIHLDLSSNNLVG 109

Query: 98  IILPQITN------------KLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL 145
            I   ++N            +L+G+IPS++G L ++  L I  N+L G IP+ +G L  L
Sbjct: 110 PIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNL 169

Query: 146 NHLIL 150
             L L
Sbjct: 170 QMLAL 174

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SKG5|SERK4_ARATH Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 20/142 (14%)

Query: 12  EGHALVKWKASLKVH--SRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMS 69
           EG AL + K SL     + ++L SW     + T ++PC W  + CN   +V  ++L +  
Sbjct: 32  EGDALTQLKNSLSSGDPANNVLQSW-----DATLVTPCTWFHVTCNPENKVTRVDLGNAK 86

Query: 70  LNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRN 129
           L+G L+        +L YL LY            +N ++G+IP E+G L  L  L +  N
Sbjct: 87  LSGKLVP-ELGQLLNLQYLELY------------SNNITGEIPEELGDLVELVSLDLYAN 133

Query: 130 QLNGSIPQEVGQLTFLNHLILD 151
            ++G IP  +G+L  L  L L+
Sbjct: 134 SISGPIPSSLGKLGKLRFLRLN 155

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 18/137 (13%)

Query: 11  EEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSL 70
           ++G AL+ +K S++  S S+  +W     N +  +PC+W G+ CN+  RVV I L +  L
Sbjct: 24  DQGLALLSFKQSIQNQSDSVFTNW-----NSSDSNPCSWQGVTCNYDMRVVSIRLPNKRL 78

Query: 71  NGTLLEFPFSSFPHLAYLVLYNN--------ELFYIILPQ----ITNKLSGQIPSEIGLL 118
           +G+ L+    S   L ++ L +N        ELF +   Q      N  SG +P EIG L
Sbjct: 79  SGS-LDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEIGSL 137

Query: 119 THLTVLHISRNQLNGSI 135
             L  L +S N  NGSI
Sbjct: 138 KSLMTLDLSENSFNGSI 154

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
225456159	1038	PREDICTED: probable LRR receptor-like se	0.853	0.140	0.536	3e-34
225456161	1037	PREDICTED: probable LRR receptor-like se	0.853	0.140	0.524	2e-32
359491509	1032	PREDICTED: probable LRR receptor-like se	0.847	0.140	0.5	2e-27
359491512	1078	PREDICTED: probable LRR receptor-like se	0.859	0.136	0.470	2e-27
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.847	0.140	0.5	2e-27
224136674	945	predicted protein [Populus trichocarpa]	0.801	0.144	0.424	1e-22
224108397	968	predicted protein [Populus trichocarpa]	0.812	0.143	0.446	5e-22
60327226	487	Hcr2-p7.7 [Solanum pimpinellifolium]	0.824	0.289	0.440	5e-22
223452528	1052	leucine-rich repeat family protein / pro	0.847	0.137	0.414	6e-22
356568066	1074	PREDICTED: probable LRR receptor-like se	0.801	0.127	0.429	7e-22

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 103/166 (62%), Gaps = 20/166 (12%)

Query: 5   VSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTK--------ISPCAWSGIHCNH 56
           VSS S EE  AL+KWKASL+ H+ S L SW L   N T          SPC W GI CNH
Sbjct: 27  VSSYSNEETQALLKWKASLQNHNHSSLLSWDLYPNNSTNSSTHLGTATSPCKWYGISCNH 86

Query: 57  AGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQIT------------ 104
           AG V+ INLT   LNGTL++F FSSFP+LAY+ +  N L   I PQI             
Sbjct: 87  AGSVIKINLTESGLNGTLMDFSFSSFPNLAYVDISMNNLSGPIPPQIGLLFELKYLDLSI 146

Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           N+ SG IPSEIGLLT+L VLH+ +NQLNGSIP E+GQL  L  L L
Sbjct: 147 NQFSGGIPSEIGLLTNLEVLHLVQNQLNGSIPHEIGQLASLYELAL 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 101/166 (60%), Gaps = 20/166 (12%)

Query: 5   VSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVT--------KISPCAWSGIHCNH 56
           VSS S EE  AL+KWKA+L  H+ S L SW L   N T        ++SPC W GI CNH
Sbjct: 27  VSSYSNEETQALLKWKATLHNHNHSSLLSWTLYPNNFTNSSTHLGTEVSPCKWYGISCNH 86

Query: 57  AGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQIT------------ 104
           AG V+ INLT   L GTL  F FSSFP+LAY+ +  N L   I PQI             
Sbjct: 87  AGSVIRINLTESGLGGTLQAFSFSSFPNLAYVDISMNNLSGPIPPQIGLLSKLKYLDLSI 146

Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           N+ SG IP EIGLLT+L VLH+ +NQLNGSIP E+GQLT L  L L
Sbjct: 147 NQFSGGIPPEIGLLTNLEVLHLVQNQLNGSIPHEIGQLTSLYELAL 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 103/170 (60%), Gaps = 25/170 (14%)

Query: 2   SLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKIS---------PCAWSGI 52
           S +VSS+S EE  AL+KWKA+L ++   LL  W L   N+T  S         PC W GI
Sbjct: 24  SDNVSSHSNEETQALLKWKATL-LNQNLLL--WSLHPNNITNSSAQPGTATRTPCKWFGI 80

Query: 53  HCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI--------- 103
            C  AG V+ INLT + L GTL +F FSSFP+LAY  +  N+L   I PQI         
Sbjct: 81  SC-KAGSVIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYL 139

Query: 104 ---TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
              TN+ SG+IPSEIGLLT+L VLH+  NQLNGSIP E+GQL  L  L L
Sbjct: 140 DLSTNQFSGRIPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCDLSL 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 98/172 (56%), Gaps = 25/172 (14%)

Query: 4   DVSSNSIEEGHALVKWKASLKVHSRSLLHSWFL----------SSVNVTKISPCAWSGIH 53
           D+ S+S EE  AL+KWK++L  H+ S L SW L          S+ + T   PC W GI 
Sbjct: 52  DMKSDSNEETQALLKWKSTLHNHNHSFLLSWTLYPDPNNSTNSSTHHGTATGPCKWYGIS 111

Query: 54  CNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------- 103
           CNHAG V+ INLT   L GTL  F FSSFP+LAY+ +  N L   I PQI          
Sbjct: 112 CNHAGSVIRINLTESGLRGTLQAFSFSSFPNLAYVDVCINNLSGPIPPQIGLLSKLKYLD 171

Query: 104 --TNKLSGQIPSEIGLLTHLTVLH---ISRNQLNGSIPQEVGQLTFLNHLIL 150
             TN+ SG IP EIGLLT+L VLH   +  NQL GSIP  +G L+ L  L L
Sbjct: 172 LSTNQFSGGIPPEIGLLTNLEVLHLLALYTNQLEGSIPASLGNLSNLASLYL 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 103/170 (60%), Gaps = 25/170 (14%)

Query: 2   SLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKIS---------PCAWSGI 52
           S +VSS+S EE  AL+KWKA+L ++   LL  W L   N+T  S         PC W GI
Sbjct: 24  SDNVSSHSNEETQALLKWKATL-LNQNLLL--WSLHPNNITNSSAQPGTATRTPCKWFGI 80

Query: 53  HCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI--------- 103
            C  AG V+ INLT + L GTL +F FSSFP+LAY  +  N+L   I PQI         
Sbjct: 81  SC-KAGSVIRINLTDLGLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYL 139

Query: 104 ---TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
              TN+ SG+IPSEIGLLT+L VLH+  NQLNGSIP E+GQL  L  L L
Sbjct: 140 DLSTNQFSGRIPSEIGLLTNLEVLHLVENQLNGSIPHEIGQLKSLCDLSL 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136674|ref|XP_002322387.1| predicted protein [Populus trichocarpa] gi|222869383|gb|EEF06514.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 86/153 (56%), Gaps = 16/153 (10%)

Query: 7   SNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLT 66
           +N  +E  AL+KWK SL   S+SLL SW          SPC W GI C+ +G V  I+L 
Sbjct: 37  ANGRKEAEALLKWKVSLDNRSQSLLSSW-------AGDSPCNWVGISCDKSGSVTNISLP 89

Query: 67  SMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQIT---------NKLSGQIPSEIGL 117
           + SL GTL    F SFP+L YL+L+NN L+  I P I          N +SG IP E+G 
Sbjct: 90  NSSLRGTLNSLRFPSFPNLIYLILHNNSLYGSIPPHIGNLIRLDLSLNSISGNIPPEVGK 149

Query: 118 LTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           L  L +L +S N L+G +P  +G L+ L+ L L
Sbjct: 150 LVSLYLLDLSNNNLSGGLPTSIGNLSNLSFLYL 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108397|ref|XP_002333400.1| predicted protein [Populus trichocarpa] gi|222836440|gb|EEE74847.1| predicted protein [Populus trichocarpa]

 Score =  109 bits (272), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 92/159 (57%), Gaps = 20/159 (12%)

Query: 5   VSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPC-AWSGIHCNHAGRVVGI 63
           V+  +I+E  AL+KWKASL   S+SLL SW          SPC  W GI C+ +G V  +
Sbjct: 55  VAGGNIKETEALLKWKASLDNQSQSLLSSW-------VGTSPCINWIGITCDGSGSVANL 107

Query: 64  NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKLSGQI 111
              +  L GTL +F FSSFP+L+ L L NN +   I      L +IT      N L+G I
Sbjct: 108 TFPNFGLRGTLYDFNFSSFPNLSILDLSNNSIHGTIPSHIGNLSKITQLGLCYNDLTGSI 167

Query: 112 PSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           PSEIG L  +T L + RN L+GSIP E+G+LT L+ L L
Sbjct: 168 PSEIGSLKSITDLVLCRNLLSGSIPHEIGKLTSLSRLSL 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60327226|gb|AAX19036.1| Hcr2-p7.7 [Solanum pimpinellifolium]

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 88/159 (55%), Gaps = 18/159 (11%)

Query: 9   SIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSM 68
           S EE  AL+KWKA+ K  + S L SW  SS N  K     W G+ C   GRV  +N+T+ 
Sbjct: 27  STEEATALLKWKATFKNQNNSFLASWIPSS-NACK----DWDGVVC-FNGRVNTLNITNA 80

Query: 69  SLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIG 116
           S+ GTL  FPFSS P L  L L  N ++  I P+I             NK+SG IP +IG
Sbjct: 81  SVIGTLYAFPFSSLPSLENLDLSKNNIYGTIPPEIGNLTNLVYLDLNNNKISGTIPPQIG 140

Query: 117 LLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL 155
           LL  L ++ I  NQLNG IP+E+G L  L  L L + FL
Sbjct: 141 LLAKLQIIRIFHNQLNGFIPKEIGYLRSLTKLSLGINFL 179

Source: Solanum pimpinellifolium

Species: Solanum pimpinellifolium

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223452528|gb|ACM89591.1| leucine-rich repeat family protein / protein kinase family protein [Glycine max]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 88/164 (53%), Gaps = 19/164 (11%)

Query: 12  EGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLN 71
           E +AL+KWKASL   S++LL SW  +S       PC W GI C+H   V  INLT + L 
Sbjct: 28  EANALLKWKASLHNQSQALLSSWGGNS-------PCNWLGIACDHTKSVSNINLTRIGLR 80

Query: 72  GTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLT 119
           GTL    FSS P++  L + NN L   I PQI             N LSG+IP EI  L 
Sbjct: 81  GTLQTLSFSSLPNILTLDMSNNSLNGSIPPQIRMLSKLTHLNLSDNHLSGEIPFEITQLV 140

Query: 120 HLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSL 163
            L +L ++ N  NGSIPQE+G L  L  L ++ + L   +  S+
Sbjct: 141 SLRILDLAHNAFNGSIPQEIGALRNLRELTIEFVNLTGTIPNSI 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568066|ref|XP_003552234.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 85/156 (54%), Gaps = 19/156 (12%)

Query: 12  EGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLN 71
           E +AL+KWKASL   S++LL SW  +S       PC W GI C+H   V  INLT + L 
Sbjct: 50  EANALLKWKASLHNQSQALLSSWGGNS-------PCNWLGIACDHTKSVSNINLTRIGLR 102

Query: 72  GTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLT 119
           GTL    FSS P++  L + NN L   I PQI             N LSG+IP EI  L 
Sbjct: 103 GTLQTLSFSSLPNILTLDMSNNSLNGSIPPQIRMLSKLTHLNLSDNHLSGEIPFEITQLV 162

Query: 120 HLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL 155
            L +L ++ N  NGSIPQE+G L  L  L ++ + L
Sbjct: 163 SLRILDLAHNAFNGSIPQEIGALRNLRELTIEFVNL 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.812	0.133	0.373	9.6e-19
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.836	0.127	0.356	4.2e-17
TAIR|locus:2171973	614	AT5G45780 [Arabidopsis thalian	0.766	0.213	0.348	2.5e-15
TAIR|locus:2131518	1091	AT4G26540 [Arabidopsis thalian	0.807	0.126	0.358	2.2e-13
TAIR|locus:2170668	604	AT5G62710 [Arabidopsis thalian	0.795	0.225	0.352	1.4e-12
TAIR|locus:2040471	601	SERK5 "somatic embryogenesis r	0.754	0.214	0.328	2.3e-12
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.783	0.122	0.355	1.8e-11
TAIR|locus:2206179	592	FEI1 "FEI 1" [Arabidopsis thal	0.865	0.25	0.319	2.7e-11
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.643	0.088	0.352	2.8e-11
TAIR|locus:2040461	620	SERK4 "somatic embryogenesis r	0.824	0.227	0.319	3.7e-11

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 9.6e-19, P = 9.6e-19
 Identities = 59/158 (37%), Positives = 91/158 (57%)

Query:     7 SNSIEEGHALVKWKASLKVH-SRSLLHSWFLSSVNVTKISPC-AWSGIHCNHAGRVVGIN 64
             S ++EE +AL+KWK++     S S L SW    VN    S C +W G+ C+  G ++ +N
Sbjct:    45 SATVEEANALLKWKSTFTNQTSSSKLSSW----VNPNTSSFCTSWYGVACS-LGSIIRLN 99

Query:    65 LTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILP-----------QIT-NKLSGQIP 112
             LT+  + GT  +FPFSS P+L ++ L  N     I P            ++ N+L G+IP
Sbjct:   100 LTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIP 159

Query:   113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
              E+G L++L  LH+  N+LNGSIP E+G+LT +  + +
Sbjct:   160 PELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAI 197

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 4.2e-17, P = 4.2e-17
 Identities = 56/157 (35%), Positives = 83/157 (52%)

Query:     6 SSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINL 65
             +S +I E +AL+KWK++    S+  L SW   +   T  S  +W G+ CN  G +  +NL
Sbjct:    27 ASATIAEANALLKWKSTFTNSSK--LSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNL 84

Query:    66 TSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPS 113
             T+  + GT  +FPF S  +LAY+ L  N L   I PQ             TN L+G+I  
Sbjct:    85 TNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISP 144

Query:   114 EIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
              +G L +LTVL++ +N L   IP E+G +  +  L L
Sbjct:   145 SLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLAL 181

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2171973 AT5G45780 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
 Identities = 53/152 (34%), Positives = 80/152 (52%)

Query:    15 ALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTL 74
             AL+  K  +K   + +L  W ++SV+     PC W+ + C+  G VV + + S  L+G +
Sbjct:    42 ALMSVKNKMK-DEKEVLSGWDINSVD-----PCTWNMVGCSSEGFVVSLEMASKGLSG-I 94

Query:    75 LEFPFSSFPHLAYLVLYNNELFYII---LPQIT---------NKLSGQIPSEIGLLTHLT 122
             L        HL  L+L NN+L   I   L Q++         N+ SG+IP+ +G LTHL 
Sbjct:    95 LSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLN 154

Query:   123 VLHISRNQLNGSIPQEVGQLTFLNHLILDLIF 154
              L +SRN L+G +P  V  L+ L+   LDL F
Sbjct:   155 YLRLSRNLLSGQVPHLVAGLSGLS--FLDLSF 184

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2131518 AT4G26540 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 58/162 (35%), Positives = 74/162 (45%)

Query:     1 FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRV 60
             FSLD      ++G AL+ WK+ L + S     SW     +V   SPC W G+ CN  G V
Sbjct:    23 FSLD------QQGQALLSWKSQLNI-SGDAFSSW-----HVADTSPCNWVGVKCNRRGEV 70

Query:    61 VGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLS 108
               I L  M L G+L      S   L  L L +  L  +I  +I             N LS
Sbjct:    71 SEIQLKGMDLQGSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLS 130

Query:   109 GQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
             G IP EI  L  L  L ++ N L G IP E+G L+ L  L+L
Sbjct:   131 GDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSGLVELML 172

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2170668 AT5G62710 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 55/156 (35%), Positives = 76/156 (48%)

Query:    12 EGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAG-RVVGINLTSMSL 70
             +G AL++ K+     +R+ L +W  S       SPC+W+G+ CN    RVV INL  M L
Sbjct:    27 DGFALLELKSGFN-DTRNSLENWKDSDE-----SPCSWTGVSCNPQDQRVVSINLPYMQL 80

Query:    71 NGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNK------------LSGQIPSEIGLL 118
              G ++         L  L L+ N L   I  +ITN             L G IP ++G L
Sbjct:    81 GG-IISPSIGKLSRLQRLALHQNSLHGNIPNEITNCTELRAMYLRANFLQGGIPPDLGNL 139

Query:   119 THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIF 154
             T LT+L +S N L G+IP  + +LT L  L L   F
Sbjct:   140 TFLTILDLSSNTLKGAIPSSISRLTRLRSLNLSTNF 175

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2040471 SERK5 "somatic embryogenesis receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 50/152 (32%), Positives = 78/152 (51%)

Query:    15 ALVKWKASLKV--HSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNG 72
             AL+  ++SL    H+ ++L SW     N T ++PC+W  + CN    V  ++L S +L+G
Sbjct:    30 ALIALRSSLSSGDHTNNILQSW-----NATHVTPCSWFHVTCNTENSVTRLDLGSANLSG 84

Query:    73 TLLEFPFSSFPHLAYLVLYNN-----------ELFYII-LPQITNKLSGQIPSEIGLLTH 120
              L+    +  P+L YL L+NN           +L  ++ L    N +SG IPS +G L  
Sbjct:    85 ELVP-QLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGK 143

Query:   121 LTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
             L  L +  N L+G IP+    LT L   +LD+
Sbjct:   144 LRFLRLYNNSLSGEIPRS---LTALPLDVLDI 172

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 54/152 (35%), Positives = 68/152 (44%)

Query:    11 EEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSL 70
             E+G AL+ WK+ L + S   L SW  S  N     PC W GI CN  G+V  I L  M  
Sbjct:    30 EQGLALLSWKSQLNI-SGDALSSWKASESN-----PCQWVGIKCNERGQVSEIQLQVMDF 83

Query:    71 NGTLLEFPFSSFPHLAYLVLYN--------NELFYI----ILPQITNKLSGQIPSEIGLL 118
              G L          L  L L +         EL  +    +L    N LSG+IP +I  L
Sbjct:    84 QGPLPATNLRQIKSLTLLSLTSVNLTGSIPKELGDLSELEVLDLADNSLSGEIPVDIFKL 143

Query:   119 THLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
               L +L ++ N L G IP E+G L  L  L L
Sbjct:   144 KKLKILSLNTNNLEGVIPSELGNLVNLIELTL 175

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2206179 FEI1 "FEI 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.7e-11, P = 2.7e-11
 Identities = 54/169 (31%), Positives = 84/169 (49%)

Query:     2 SLDVSSNSIE-EGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCN-HAGR 59
             SL   S +I  +G AL+ ++ ++   S S +H W     +     PC W+G+ C+    R
Sbjct:    22 SLSNESQAISPDGEALLSFRNAV-TRSDSFIHQWRPEDPD-----PCNWNGVTCDAKTKR 75

Query:    60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII---------LPQI---TNKL 107
             V+ +NLT   + G L         HL  L+L+NN L+  I         L +I   +N  
Sbjct:    76 VITLNLTYHKIMGPLPP-DIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYF 134

Query:   108 SGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156
             +G IP+E+G L  L  L +S N L+G IP  +GQL  L++  +   FL+
Sbjct:   135 TGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSNNFLV 183

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009664 "plant-type cell wall organization" evidence=RCA;IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0016301 "kinase activity" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 44/125 (35%), Positives = 70/125 (56%)

Query:    40 NVTKISPCAWSGIHCNHAG--RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY 97
             N   I+ C+W+G+ C++ G  RV+ +NLT + L G++  + F  F +L +L L +N L  
Sbjct:    51 NSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPW-FGRFDNLIHLDLSSNNLVG 109

Query:    98 II---LPQIT---------NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL 145
              I   L  +T         N+L+G+IPS++G L ++  L I  N+L G IP+ +G L  L
Sbjct:   110 PIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNL 169

Query:   146 NHLIL 150
               L L
Sbjct:   170 QMLAL 174

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2040461 SERK4 "somatic embryogenesis receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 53/166 (31%), Positives = 82/166 (49%)

Query:     1 FSLDVSSNSIEEGHALVKWKASLKVH--SRSLLHSWFLSSVNVTKISPCAWSGIHCNHAG 58
             F+L V+ N+  EG AL + K SL     + ++L SW     + T ++PC W  + CN   
Sbjct:    23 FTLRVAGNA--EGDALTQLKNSLSSGDPANNVLQSW-----DATLVTPCTWFHVTCNPEN 75

Query:    59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNN--------ELFYII----LPQITNK 106
             +V  ++L +  L+G L+        +L YL LY+N        EL  ++    L    N 
Sbjct:    76 KVTRVDLGNAKLSGKLVP-ELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANS 134

Query:   107 LSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
             +SG IPS +G L  L  L ++ N L+G IP     LT +   +LD+
Sbjct:   135 ISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMT---LTSVQLQVLDI 177

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0008219 "cell death" evidence=IGI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0010150 "leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 6e-10
 Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 23/120 (19%)

Query: 46  PCA-----WSGIHC---NHAGR--VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNEL 95
           PC      WSG  C   +  G+  + G+ L +  L G +     S   HL  + L  N  
Sbjct: 396 PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGN-- 452

Query: 96  FYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL 155
                      + G IP  +G +T L VL +S N  NGSIP+ +GQLT L  L L+   L
Sbjct: 453 ----------SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 25/165 (15%)

Query: 1   FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRV 60
             L+ S    EE   L+ +K+S+    +      +LS+ N +    C W GI CN++ RV
Sbjct: 19  LFLNFSMLHAEELELLLSFKSSINDPLK------YLSNWNSS-ADVCLWQGITCNNSSRV 71

Query: 61  VGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-------------TNKL 107
           V I+L+  +++G +    F   P++  + L NN+L   I   I              N  
Sbjct: 72  VSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 108 SGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
           +G IP   G + +L  L +S N L+G IP ++G  +F +  +LDL
Sbjct: 131 TGSIPR--GSIPNLETLDLSNNMLSGEIPNDIG--SFSSLKVLDL 171

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIF 154
           +N+L GQIP E+G +  L  +++  N L+G IP E+G LT LNH  LDL++
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH--LDLVY 245

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 23/46 (50%), Positives = 27/46 (58%)

Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           N LSG+IP EIG LT L  L +  N L G IP  +G L  L +L L
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 11 EEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCN 55
          ++  AL+ +K+SL       L SW  SS +     PC+W+G+ C+
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSWNPSSSD-----PCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 94  ELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
            L Y+ L Q  NKLSG IP  I  L  L  L +S N L+G IP+ V QL  L  L L
Sbjct: 261 NLQYLFLYQ--NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 12/71 (16%)

Query: 80  SSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEV 139
           +S P L  L L+            +NK SG+IP  +G   +LTVL +S N L G IP+ +
Sbjct: 329 TSLPRLQVLQLW------------SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Query: 140 GQLTFLNHLIL 150
                L  LIL
Sbjct: 377 CSSGNLFKLIL 387

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           NKLSG+IP E+     L  L +S NQL+G IP    ++  L+ L L
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 12/79 (15%)

Query: 79  FSSFPHLAYLVLYNNELFYIILPQIT------------NKLSGQIPSEIGLLTHLTVLHI 126
             S   L  L L  N+L   I  +++            N+LSGQIP+    +  L+ L +
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 127 SRNQLNGSIPQEVGQLTFL 145
           S+NQL+G IP+ +G +  L
Sbjct: 555 SQNQLSGEIPKNLGNVESL 573

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
PLN03150	623	hypothetical protein; Provisional	99.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.35
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.12
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.03
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.9
PLN03150	623	hypothetical protein; Provisional	98.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.9
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.86
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.77
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.67
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.63
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.62
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.39
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.39
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.27
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.17
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.05
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.04
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.01
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.84
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.79
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.72
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.68
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.57
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.35
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.3
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.07
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.82
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.74
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.4
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.81
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.65
smart00370	26	LRR Leucine-rich repeats, outliers.	94.65
PRK15386	426	type III secretion protein GogB; Provisional	94.63
PRK15386	426	type III secretion protein GogB; Provisional	94.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	91.73
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	90.17
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	89.72
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	86.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	86.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	84.96
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	82.62
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	80.56

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=3.5e-21  Score=170.73  Aligned_cols=140  Identities=34%  Similarity=0.563  Sum_probs=102.6

Q ss_pred             ChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCCcccceeeCCCCCEEEEEcCCCccceecCCCCCCCCCCCcEE
Q 047948            9 SIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYL   88 (171)
Q Consensus         9 ~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c~w~gv~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L   88 (171)
                      .+.|..||++||+.+.+ +...+.+|+      ...++|.|.||+|+..++|+.|+++++.+++.++. .+..++.|+.|
T Consensus        27 ~~~~~~~l~~~~~~~~~-~~~~~~~w~------~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L   98 (968)
T PLN00113         27 HAEELELLLSFKSSIND-PLKYLSNWN------SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQTI   98 (968)
T ss_pred             CHHHHHHHHHHHHhCCC-CcccCCCCC------CCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCEE
Confidence            55799999999999965 666678997      56789999999999777999999999988887777 77778888888


Q ss_pred             EeecCcccccccccc-----------------------------------cccccccCCccccCCcCCCEEecccCcccc
Q 047948           89 VLYNNELFYIILPQI-----------------------------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNG  133 (171)
Q Consensus        89 ~l~~n~l~g~~p~~~-----------------------------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g  133 (171)
                      ++++|.+.|.+|..+                                   .|.+.+.+|..++.+++|++|++++|.+.+
T Consensus        99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~  178 (968)
T PLN00113         99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG  178 (968)
T ss_pred             ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence            888877777666532                                   344444555555666666666666666666


Q ss_pred             cCChhhhCccccCceeccccccc
Q 047948          134 SIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       134 ~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .+|..++++++|++|++++|.+.
T Consensus       179 ~~p~~~~~l~~L~~L~L~~n~l~  201 (968)
T PLN00113        179 KIPNSLTNLTSLEFLTLASNQLV  201 (968)
T ss_pred             cCChhhhhCcCCCeeeccCCCCc
Confidence            66666666666666666666554

>PLN03150 hypothetical protein; Provisional

Probab=99.75  E-value=5.4e-18  Score=144.27  Aligned_cols=135  Identities=35%  Similarity=0.482  Sum_probs=109.3

Q ss_pred             CCCChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCC-----cccceeeCCC-----CCEEEEEcCCCccceecC
Q 047948            6 SSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPC-----AWSGIHCNHA-----GRVVGINLTSMSLNGTLL   75 (171)
Q Consensus         6 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c-----~w~gv~c~~~-----~~v~~L~l~~~~l~~~~p   75 (171)
                      .+....|..||+.+|..+.. +.  ..+|.        .++|     .|.||.|...     ..|+.|+|+++.+.|.+|
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~-~~--~~~W~--------g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip  435 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGL-PL--RFGWN--------GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP  435 (623)
T ss_pred             cccCchHHHHHHHHHHhcCC-cc--cCCCC--------CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC
Confidence            34566799999999999864 32  24787        2455     6999999521     248999999999999999


Q ss_pred             CCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccccc
Q 047948           76 EFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL  155 (171)
Q Consensus        76 ~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l  155 (171)
                      . ++..|+.|+.|++++|.+.|            .+|..++.+++|+.|+|++|+++|.+|+.++++++|++|+|++|++
T Consensus       436 ~-~i~~L~~L~~L~Ls~N~l~g------------~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        436 N-DISKLRHLQSINLSGNSIRG------------NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             H-HHhCCCCCCEEECCCCcccC------------cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence            9 99999999999999998875            4556778888888888888888888888888888888888888888


Q ss_pred             ccccchhhh
Q 047948          156 IFWMVQSLV  164 (171)
Q Consensus       156 ~~~~~~~L~  164 (171)
                      ++.++..|.
T Consensus       503 ~g~iP~~l~  511 (623)
T PLN03150        503 SGRVPAALG  511 (623)
T ss_pred             cccCChHHh
Confidence            877766554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.35  E-value=1e-12  Score=117.02  Aligned_cols=95  Identities=37%  Similarity=0.494  Sum_probs=41.8

Q ss_pred             EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecc
Q 047948           60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      +++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+            .|.+.+.+|..++.+++|+.|+++
T Consensus       142 L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        142 LETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             CCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            44444444444444444 44445555555555555444444333            333444444444444444444444


Q ss_pred             cCcccccCChhhhCccccCceecccccc
Q 047948          128 RNQLNGSIPQEVGQLTFLNHLILDLIFL  155 (171)
Q Consensus       128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l  155 (171)
                      +|++++.+|..++++++|++|++++|.+
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCcee
Confidence            4444444444444444444444444433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.12  E-value=5.4e-12  Score=90.34  Aligned_cols=83  Identities=25%  Similarity=0.395  Sum_probs=57.7

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      .+++++.|+.|.++ .+|+ .+..|.+|+.|++.+|++.             .+|..++.++.|++|+++-|++. .+|.
T Consensus        33 s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-------------~lp~~issl~klr~lnvgmnrl~-~lpr   96 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-------------ELPTSISSLPKLRILNVGMNRLN-ILPR   96 (264)
T ss_pred             hhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-------------hcChhhhhchhhhheecchhhhh-cCcc
Confidence            36888888999887 6666 7888999999999988886             45555555556666666655555 5555


Q ss_pred             hhhCccccCceeccccccc
Q 047948          138 EVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .|+.++.|++|||++|++.
T Consensus        97 gfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             ccCCCchhhhhhccccccc
Confidence            5665555666655555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.03  E-value=2.4e-10  Score=90.77  Aligned_cols=51  Identities=22%  Similarity=0.370  Sum_probs=44.0

Q ss_pred             eeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc
Q 047948           52 IHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI  103 (171)
Q Consensus        52 v~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~  103 (171)
                      |.|..+|          ..+.|+|+.|+++ .+|+.+|..|+.|++|||++|.++.+-|..|
T Consensus        51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF  111 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAF  111 (498)
T ss_pred             EEccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhh
Confidence            6676544          6799999999999 6776699999999999999999998888777

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.92  E-value=2.1e-09  Score=59.97  Aligned_cols=41  Identities=34%  Similarity=0.807  Sum_probs=29.8

Q ss_pred             hHHHHHHHHHHHhcccCCCCCCCCCCCccCCCC-CCCCCcccceeeC
Q 047948           10 IEEGHALVKWKASLKVHSRSLLHSWFLSSVNVT-KISPCAWSGIHCN   55 (171)
Q Consensus        10 ~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~-~~~~c~w~gv~c~   55 (171)
                      +.|++||++||..+..++...+.+|+     .. ..+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~-----~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWN-----PSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT-------TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCC-----CcCCCCCeeeccEEeC
Confidence            57999999999999864667899998     23 3799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=1e-09  Score=65.76  Aligned_cols=60  Identities=35%  Similarity=0.410  Sum_probs=45.9

Q ss_pred             CCCcEEEeecCcccccccccccccccccCC-ccccCCcCCCEEecccCcccccCChhhhCccccCceecccccc
Q 047948           83 PHLAYLVLYNNELFYIILPQITNKLSGQIP-SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL  155 (171)
Q Consensus        83 ~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l  155 (171)
                      ++|+.|++++|+++             .+| ..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~-------------~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-------------EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-------------EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-------------ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            35778888888776             233 4667788888888888888866666788888888888888875

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.90  E-value=1.4e-10  Score=96.14  Aligned_cols=44  Identities=18%  Similarity=0.110  Sum_probs=27.4

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI  103 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~  103 (171)
                      .+..|+|+.|+++..-.. .+.+|+.|+.|++++|.+...-+..+
T Consensus       270 kme~l~L~~N~l~~vn~g-~lfgLt~L~~L~lS~NaI~rih~d~W  313 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEG-WLFGLTSLEQLDLSYNAIQRIHIDSW  313 (873)
T ss_pred             ccceeecccchhhhhhcc-cccccchhhhhccchhhhheeecchh
Confidence            466677777776644334 66677777777777777665444433

>PLN03150 hypothetical protein; Provisional

Probab=98.90  E-value=1.7e-09  Score=92.65  Aligned_cols=86  Identities=26%  Similarity=0.359  Sum_probs=76.3

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      .+++.|+|++|.+.|.+|. .+..++.|+.|++++|.++|            .+|..++.+++|+.|++++|+++|.+|.
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg------------~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNG------------SIPESLGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             CCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCC------------CCchHHhcCCCCCEEECcCCcccccCCh
Confidence            3789999999999999998 89999999999999998875            5668899999999999999999999999


Q ss_pred             hhhCc-cccCceeccccccc
Q 047948          138 EVGQL-TFLNHLILDLIFLI  156 (171)
Q Consensus       138 ~~~~l-~~L~~L~Ls~N~l~  156 (171)
                      .++.+ .++..+++.+|...
T Consensus       509 ~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        509 ALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             HHhhccccCceEEecCCccc
Confidence            98764 46778889888754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.90  E-value=6e-10  Score=88.90  Aligned_cols=94  Identities=29%  Similarity=0.359  Sum_probs=81.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++-++|++|-+. .+|. +++.+..|+.|+++.|+|. .+|..+            .|++...-|+.+.+|.+|..||+
T Consensus       436 kLt~L~L~NN~Ln-~LP~-e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL  512 (565)
T KOG0472|consen  436 KLTFLDLSNNLLN-DLPE-EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL  512 (565)
T ss_pred             cceeeecccchhh-hcch-hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence            6788899988877 8888 8999999999999999886 556554            46766555556999999999999


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .+|.+. .+|+.+++|.+|++|++.+|+|+
T Consensus       513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CCCchh-hCChhhccccceeEEEecCCccC
Confidence            999999 99999999999999999999998

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=1.6e-09  Score=78.53  Aligned_cols=92  Identities=23%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccc-cCCcCCCEEecccCcccccCC-
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEI-GLLTHLTVLHISRNQLNGSIP-  136 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~-~~l~~L~~L~ls~N~l~g~~P-  136 (171)
                      +++.|++++|.++ .+..  +..|+.|+.|++++|.++             .+...+ ..+++|+.|++++|++.. +- 
T Consensus        43 ~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~-------------~i~~~l~~~lp~L~~L~L~~N~I~~-l~~  105 (175)
T PF14580_consen   43 KLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRIS-------------SISEGLDKNLPNLQELYLSNNKISD-LNE  105 (175)
T ss_dssp             T--EEE-TTS--S---TT------TT--EEE--SS----------------S-CHHHHHH-TT--EEE-TTS---S-CCC
T ss_pred             CCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCC-------------ccccchHHhCCcCCEEECcCCcCCC-hHH
Confidence            4566666666655 2332  455566666666666654             222222 245667777777776652 21 


Q ss_pred             -hhhhCccccCceeccccccc---------cccchhhhccc
Q 047948          137 -QEVGQLTFLNHLILDLIFLI---------FWMVQSLVLLA  167 (171)
Q Consensus       137 -~~~~~l~~L~~L~Ls~N~l~---------~~~~~~L~~L~  167 (171)
                       ..+..+++|++|++.+|+++         ...+++|+.||
T Consensus       106 l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen  106 LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence             23455666777777777665         34455555555

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.86  E-value=1.2e-09  Score=90.77  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=20.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELF   96 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~   96 (171)
                      .+..+.|+.|+++ .+|...|.+|+.|+.|+|..|.+.
T Consensus       198 sL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  198 SLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence            4555555555555 334325555666666666665554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.82  E-value=3e-10  Score=81.48  Aligned_cols=93  Identities=29%  Similarity=0.366  Sum_probs=55.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------ccccc-ccCCccccCCcCCCEEe
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLS-GQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~-g~~p~~~~~l~~L~~L~  125 (171)
                      ++..+++.+|++. .+|. ++..++.|+.|+++-|++. ..|..|            +|++. ..+|..|..|+-|+.|.
T Consensus        57 nlevln~~nnqie-~lp~-~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   57 NLEVLNLSNNQIE-ELPT-SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhcccchhh-hcCh-hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            6788889999988 7777 8999999999999988886 223222            22222 22344444444444444


Q ss_pred             cccCcccccCChhhhCccccCceecccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFL  155 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l  155 (171)
                      ++.|.|. .+|+.++++++|+.|.+.+|.+
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            4444444 4555555555555555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.77  E-value=2.7e-09  Score=85.20  Aligned_cols=52  Identities=35%  Similarity=0.487  Sum_probs=45.0

Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .|+.-+.+|..+..+++|..|++++|-+. .+|.+++.+..|+.|+++.|+|.
T Consensus       420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr  471 (565)
T KOG0472|consen  420 SNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR  471 (565)
T ss_pred             hcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc
Confidence            56666678888889999999999998888 89999999999999999999886

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.74  E-value=1.2e-08  Score=73.89  Aligned_cols=94  Identities=22%  Similarity=0.291  Sum_probs=35.2

Q ss_pred             CEEEEEcCCCccceecCCCCCC-CCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFS-SFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~-~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      +++.|+|++|.++ .+.  .+. .+..|+.|++++|.++.             + ..+..++.|+.|++++|+++ .+.+
T Consensus        20 ~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~-------------l-~~l~~L~~L~~L~L~~N~I~-~i~~   81 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITK-------------L-EGLPGLPRLKTLDLSNNRIS-SISE   81 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----------------TT----TT--EEE--SS----S-CH
T ss_pred             ccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcc-------------c-cCccChhhhhhcccCCCCCC-cccc
Confidence            5789999999988 343  355 57899999999999972             2 24667899999999999999 6766


Q ss_pred             hh-hCccccCceeccccccc-------cccchhhhcccccc
Q 047948          138 EV-GQLTFLNHLILDLIFLI-------FWMVQSLVLLAIWP  170 (171)
Q Consensus       138 ~~-~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~~  170 (171)
                      .+ ..+++|++|++++|++.       ...+++|+.|++..
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred             chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence            55 46899999999999997       34567788887753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.68  E-value=2.6e-09  Score=89.70  Aligned_cols=107  Identities=24%  Similarity=0.296  Sum_probs=81.3

Q ss_pred             CEEEEEcCCCccce-ecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCc-cccCCcCCCEE
Q 047948           59 RVVGINLTSMSLNG-TLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPS-EIGLLTHLTVL  124 (171)
Q Consensus        59 ~v~~L~l~~~~l~~-~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~-~~~~l~~L~~L  124 (171)
                      +++++++..|++.. .+|. .+..|..|+.||||+|++. ..|..+            +|++. .||. -+.+++.|-.|
T Consensus        79 ~LRsv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hhHHHhhhccccccCCCCc-hhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence            45666777777653 3666 7888888888888888886 566655            56655 4664 46789999999


Q ss_pred             ecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          125 HISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       125 ~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      |||.|++. .+|+.+..+..|+.|+|++|.+.      ...+++|.+|.+.
T Consensus       156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS  205 (1255)
T ss_pred             ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence            99999999 99999999999999999999876      4445566655554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.67  E-value=1.5e-07  Score=81.94  Aligned_cols=24  Identities=17%  Similarity=-0.013  Sum_probs=18.5

Q ss_pred             ccccCCCChHHHHHHHHHHHhccc
Q 047948            2 SLDVSSNSIEEGHALVKWKASLKV   25 (171)
Q Consensus         2 ~~~~~~~~~~~~~~l~~~~~~l~~   25 (171)
                      |+.......++...+.++.+.+..
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~l~~   77 (754)
T PRK15370         54 CHPPETASPEEIKSKFECLRMLAF   77 (754)
T ss_pred             hCCCCCCCHHHHHHHHHHHHHhcC
Confidence            455667778888888888888865

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.66  E-value=2.1e-09  Score=92.87  Aligned_cols=92  Identities=25%  Similarity=0.278  Sum_probs=66.6

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|+|++|++. .+|+..+.+|..|+.|++|+|+++ .+|..+            +|++. .+| ++..+++|+.+|
T Consensus       383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence            37899999999887 677657888999999999999988 455554            56665 344 677778888888


Q ss_pred             cccCccccc-CChhhhCccccCceeccccc
Q 047948          126 ISRNQLNGS-IPQEVGQLTFLNHLILDLIF  154 (171)
Q Consensus       126 ls~N~l~g~-~P~~~~~l~~L~~L~Ls~N~  154 (171)
                      +|.|+++.. +|.. ..-++|++||+++|.
T Consensus       459 lS~N~L~~~~l~~~-~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEA-LPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cccchhhhhhhhhh-CCCcccceeeccCCc
Confidence            888887743 3332 223678888888775

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.63  E-value=4.9e-08  Score=58.38  Aligned_cols=60  Identities=32%  Similarity=0.439  Sum_probs=50.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQL  131 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l  131 (171)
                      +++.|++++|+++ .+|...|..++.|++|++++|.+...            .|..|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i------------~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSI------------PPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEE------------ETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCcc------------CHHHHcCCCCCCEEeCcCCcC
Confidence            5889999999999 55543899999999999999998732            235789999999999999975

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.62  E-value=7.6e-09  Score=86.97  Aligned_cols=107  Identities=26%  Similarity=0.311  Sum_probs=75.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------------------------------
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-----------------------------------  103 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-----------------------------------  103 (171)
                      +...|+|++|++. .+|..-|.+|+-|-.||||+|++. .+|+.+                                   
T Consensus       127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            5566666766665 555434566666777777777766 334333                                   


Q ss_pred             --cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc-----cccchhhhcccc
Q 047948          104 --TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAI  168 (171)
Q Consensus       104 --~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l  168 (171)
                        .++--..+|..+-.+.+|+.+|+|.|++. .+|+.+.++++|+.|+||+|+++     ...-..|+.|++
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNl  275 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNL  275 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcc
Confidence              22223357888888899999999999999 99999999999999999999988     233345666665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.40  E-value=4.7e-07  Score=78.93  Aligned_cols=98  Identities=20%  Similarity=0.333  Sum_probs=45.5

Q ss_pred             EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc----------cccccccCCccccCCcCCCEEecccC
Q 047948           60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI----------TNKLSGQIPSEIGLLTHLTVLHISRN  129 (171)
Q Consensus        60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~----------~n~l~g~~p~~~~~l~~L~~L~ls~N  129 (171)
                      ++.|++++|.++ .+|. .+.  +.|+.|++++|+++. +|..+          .|++.. +|..+  .++|+.|++++|
T Consensus       264 L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N  335 (754)
T PRK15370        264 LQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGEN  335 (754)
T ss_pred             CCEEECcCCccC-cccc-ccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCcccc-CCccc--cccceeccccCC
Confidence            445555555554 3444 332  356667777766663 23221          444442 33222  134555555555


Q ss_pred             cccccCChhhhCccccCceeccccccc---cccchhhhcccc
Q 047948          130 QLNGSIPQEVGQLTFLNHLILDLIFLI---FWMVQSLVLLAI  168 (171)
Q Consensus       130 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~---~~~~~~L~~L~l  168 (171)
                      .++ .+|..+.  ++|+.|++++|+|+   ..++++|+.|++
T Consensus       336 ~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~LdL  374 (754)
T PRK15370        336 ALT-SLPASLP--PELQVLDVSKNQITVLPETLPPTITTLDV  374 (754)
T ss_pred             ccc-cCChhhc--CcccEEECCCCCCCcCChhhcCCcCEEEC
Confidence            555 3444332  34555555555544   223344444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.39  E-value=2.2e-07  Score=51.94  Aligned_cols=37  Identities=30%  Similarity=0.386  Sum_probs=25.3

Q ss_pred             cCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          119 THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       119 ~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|++|++++|+++ .+|+.+++|++|++|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35777777777777 66666777777777777777765

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.39  E-value=3.3e-07  Score=79.91  Aligned_cols=46  Identities=26%  Similarity=0.210  Sum_probs=36.3

Q ss_pred             cCCCEEecccCcccccCChhhhCccccCceeccccccccccchhhhc
Q 047948          119 THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVL  165 (171)
Q Consensus       119 ~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L~~  165 (171)
                      ..|+.|++++|+++ .+|..+.++++|+.|+|++|+|++..+.+|..
T Consensus       422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            35667777777777 78888888999999999999998777666643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.39  E-value=5.1e-08  Score=84.59  Aligned_cols=94  Identities=27%  Similarity=0.234  Sum_probs=71.8

Q ss_pred             ecCCCCCCCCCCCcEEEeecCcccccccccc--------------------------------------cccccccCCcc
Q 047948           73 TLLEFPFSSFPHLAYLVLYNNELFYIILPQI--------------------------------------TNKLSGQIPSE  114 (171)
Q Consensus        73 ~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~--------------------------------------~n~l~g~~p~~  114 (171)
                      .+|+ ....++.|+.|++..|++. .+|..+                                      .|.+....-+.
T Consensus       301 yip~-~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~  378 (1081)
T KOG0618|consen  301 YIPP-FLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV  378 (1081)
T ss_pred             hCCC-cccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence            5666 5667899999999999886 444433                                      68887776667


Q ss_pred             ccCCcCCCEEecccCcccccCChh-hhCccccCceeccccccc-----cccchhhhccccc
Q 047948          115 IGLLTHLTVLHISRNQLNGSIPQE-VGQLTFLNHLILDLIFLI-----FWMVQSLVLLAIW  169 (171)
Q Consensus       115 ~~~l~~L~~L~ls~N~l~g~~P~~-~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l~  169 (171)
                      +..+.+|++|+|++|++. .+|+. +.++..|++|+||+|+++     ......|++|..+
T Consensus       379 l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             hccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence            888899999999999998 88875 668889999999999987     4444555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.27  E-value=1.1e-07  Score=79.07  Aligned_cols=91  Identities=26%  Similarity=0.377  Sum_probs=54.2

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------------------------------
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-----------------------------------  103 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-----------------------------------  103 (171)
                      .++.++|+.|+++ .+|. .++.|+ |+.|-+++|+++ .+|..+                                   
T Consensus       122 ~lt~l~ls~NqlS-~lp~-~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  122 ALTFLDLSSNQLS-HLPD-GLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             HHHHhhhccchhh-cCCh-hhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence            4566666666665 4454 444443 555555555554 233332                                   


Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .|++. .+|.++. .-.|..||+|.|+++ .+|-.|.+|+.|++|.|.+|.++
T Consensus       198 Rn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  198 RNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            34443 3455555 334667777777777 77777777777777777777776

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.18  E-value=3.7e-07  Score=71.42  Aligned_cols=37  Identities=24%  Similarity=0.173  Sum_probs=16.6

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCC---CcEEEeecCccc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPH---LAYLVLYNNELF   96 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~---L~~L~l~~n~l~   96 (171)
                      +++.++++++.+.+..+. .+..+..   |++|++++|.+.
T Consensus        82 ~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~  121 (319)
T cd00116          82 GLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLG  121 (319)
T ss_pred             ceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccc
Confidence            455555555555432222 2222222   555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.17  E-value=4.9e-07  Score=70.30  Aligned_cols=92  Identities=21%  Similarity=0.231  Sum_probs=51.0

Q ss_pred             EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC---
Q 047948           60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP---  136 (171)
Q Consensus        60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P---  136 (171)
                      ++.+||++|.++ .+.. ++.-++.++.|++++|.+.-             + ..+..+++|+.||||+|.++ ++-   
T Consensus       286 LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~~-------------v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh  348 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIRT-------------V-QNLAELPQLQLLDLSGNLLA-ECVGWH  348 (490)
T ss_pred             hhhccccccchh-hhhh-hhhhccceeEEeccccceee-------------e-hhhhhcccceEeecccchhH-hhhhhH
Confidence            455666666655 4444 45555566666666665541             1 23455556666666666554 222   


Q ss_pred             -------------------hhhhCccccCceeccccccc-------cccchhhhcccc
Q 047948          137 -------------------QEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAI  168 (171)
Q Consensus       137 -------------------~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l  168 (171)
                                         ..++++-+|.+||+.+|++.       ...++.|+.+.+
T Consensus       349 ~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence                               12344556777777777776       344566665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.13  E-value=4.8e-06  Score=72.79  Aligned_cols=13  Identities=31%  Similarity=0.309  Sum_probs=6.2

Q ss_pred             CCcEEEeecCccc
Q 047948           84 HLAYLVLYNNELF   96 (171)
Q Consensus        84 ~L~~L~l~~n~l~   96 (171)
                      .|+.|++++|+++
T Consensus       343 ~Lq~LdLS~N~Ls  355 (788)
T PRK15387        343 GLQELSVSDNQLA  355 (788)
T ss_pred             ccceEecCCCccC
Confidence            3444555555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=2.4e-06  Score=47.69  Aligned_cols=40  Identities=33%  Similarity=0.521  Sum_probs=29.2

Q ss_pred             CCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948           83 PHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP  136 (171)
Q Consensus        83 ~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P  136 (171)
                      ++|++|++++|+++             .+|+.++.+++|+.|++++|+++ .+|
T Consensus         1 ~~L~~L~l~~N~i~-------------~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-------------DLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-------------SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-------------ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            36788888888886             45566888888888888888888 443

...

>PLN03210 Resistant to P

Probab=98.05  E-value=1.2e-05  Score=73.64  Aligned_cols=92  Identities=22%  Similarity=0.212  Sum_probs=48.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------cccccccCCccccCCcCCCEEecc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-----------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-----------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      +++.|++.++.+. .++. .+..++.|+.|+++++...+.+|..-           ++..-..+|..+..+++|+.|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            4566666666655 3444 45666666666666654333333210           122223455555566666666666


Q ss_pred             cCcccccCChhhhCccccCceecccc
Q 047948          128 RNQLNGSIPQEVGQLTFLNHLILDLI  153 (171)
Q Consensus       128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N  153 (171)
                      +|..-+.+|..+ ++++|++|++++|
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            544333555543 4555555555544

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.04  E-value=9.1e-07  Score=69.20  Aligned_cols=97  Identities=21%  Similarity=0.182  Sum_probs=49.7

Q ss_pred             CEEEEEcCCCcccee----cCCCCCCCCCCCcEEEeecCcccccc----cc------cc------cccccc----cCCcc
Q 047948           59 RVVGINLTSMSLNGT----LLEFPFSSFPHLAYLVLYNNELFYII----LP------QI------TNKLSG----QIPSE  114 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~----~p~~~l~~L~~L~~L~l~~n~l~g~~----p~------~~------~n~l~g----~~p~~  114 (171)
                      +++.+++++|.+++.    +.. .+..++.|+.|++++|.+.+..    +.      .+      .|.+.+    .++..
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            677777777776632    222 3445566777777777766321    10      01      233321    12233


Q ss_pred             ccCCcCCCEEecccCcccccCChhhhC-----ccccCceeccccccc
Q 047948          115 IGLLTHLTVLHISRNQLNGSIPQEVGQ-----LTFLNHLILDLIFLI  156 (171)
Q Consensus       115 ~~~l~~L~~L~ls~N~l~g~~P~~~~~-----l~~L~~L~Ls~N~l~  156 (171)
                      +..+++|++|++++|.+++.....+..     .+.|++|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            445566666666666666422222211     245666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.02  E-value=1.1e-05  Score=73.81  Aligned_cols=93  Identities=16%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------cccccccCCccccCCcCCCEEecc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-----------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-----------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      .++.|++++|...+.+|. ++..++.|+.|++++|...+.+|..+           ++..-..+|.   ...+|+.|+++
T Consensus       779 sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls  854 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---ISTNISDLNLS  854 (1153)
T ss_pred             cchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---cccccCEeECC
Confidence            578888988887778888 89999999999999876555666543           1111112232   23578888888


Q ss_pred             cCcccccCChhhhCccccCceeccc-cccc
Q 047948          128 RNQLNGSIPQEVGQLTFLNHLILDL-IFLI  156 (171)
Q Consensus       128 ~N~l~g~~P~~~~~l~~L~~L~Ls~-N~l~  156 (171)
                      +|.++ .+|..+..+++|++|++++ |++.
T Consensus       855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             CCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence            88888 7888888888999998877 4454

syringae 6; Provisional

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.01  E-value=3.8e-06  Score=68.09  Aligned_cols=95  Identities=22%  Similarity=0.274  Sum_probs=67.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCC-CCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFP-HLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~-~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      .++.+++.++.++ .+++ ....+. +|+.|+++.|.+.             .+|..+..++.|+.|+++.|+++ .+|.
T Consensus       117 ~l~~L~l~~n~i~-~i~~-~~~~~~~nL~~L~l~~N~i~-------------~l~~~~~~l~~L~~L~l~~N~l~-~l~~  180 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPP-LIGLLKSNLKELDLSDNKIE-------------SLPSPLRNLPNLKNLDLSFNDLS-DLPK  180 (394)
T ss_pred             ceeEEecCCcccc-cCcc-ccccchhhcccccccccchh-------------hhhhhhhccccccccccCCchhh-hhhh
Confidence            5788888888877 5666 555564 8888888888876             44456677788888888888888 7777


Q ss_pred             hhhCccccCceeccccccc---c--ccchhhhccccc
Q 047948          138 EVGQLTFLNHLILDLIFLI---F--WMVQSLVLLAIW  169 (171)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~---~--~~~~~L~~L~l~  169 (171)
                      ..+.++.|+.|++++|+++   .  ..+..|.++.+-
T Consensus       181 ~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         181 LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS  217 (394)
T ss_pred             hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhc
Confidence            6667777888888888777   1  234446666553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.98  E-value=1.7e-06  Score=69.28  Aligned_cols=79  Identities=27%  Similarity=0.177  Sum_probs=41.3

Q ss_pred             CCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecccCcccccCChhhhCcccc
Q 047948           78 PFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL  145 (171)
Q Consensus        78 ~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L  145 (171)
                      .|..|++|+.|++++|+++++-+..|            .|++...--..|.++..|+.|+|++|+++-.-|-+|..+.+|
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l  348 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL  348 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence            36667777777777777765433222            222221111234455555555555555554555555555555


Q ss_pred             Cceeccccccc
Q 047948          146 NHLILDLIFLI  156 (171)
Q Consensus       146 ~~L~Ls~N~l~  156 (171)
                      ..|+|-.|.+.
T Consensus       349 ~~l~l~~Np~~  359 (498)
T KOG4237|consen  349 STLNLLSNPFN  359 (498)
T ss_pred             eeeehccCccc
Confidence            55555555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.84  E-value=6.7e-06  Score=64.12  Aligned_cols=102  Identities=24%  Similarity=0.226  Sum_probs=74.8

Q ss_pred             ccceeeCCC-----CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------cccccccCC
Q 047948           49 WSGIHCNHA-----GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-----------TNKLSGQIP  112 (171)
Q Consensus        49 w~gv~c~~~-----~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-----------~n~l~g~~p  112 (171)
                      .+.++|...     ..|+.|+++.|++. .+.  .+..|.+|+.||+++|.++...-...           .|.+...  
T Consensus       293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--  367 (490)
T KOG1259|consen  293 GNLITQIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--  367 (490)
T ss_pred             ccchhhhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--
Confidence            344555432     37999999999987 332  47889999999999999874322111           3433321  


Q ss_pred             ccccCCcCCCEEecccCcccccCC--hhhhCccccCceeccccccc
Q 047948          113 SEIGLLTHLTVLHISRNQLNGSIP--QEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       113 ~~~~~l~~L~~L~ls~N~l~g~~P--~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ..++++-+|..||+++|++. .+.  ..+++++.|+++.|.+|.+.
T Consensus       368 SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  368 SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence            34677889999999999998 333  35899999999999999997

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.79  E-value=2.7e-06  Score=59.12  Aligned_cols=83  Identities=25%  Similarity=0.337  Sum_probs=67.8

Q ss_pred             CCEEEEEcCCCccceecCCCCCC-CCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFS-SFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP  136 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~-~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P  136 (171)
                      .+++.++|++|.+. .+|+ .|. .++.++.|++++|.++             .+|.++..++.|+.|+++.|.|. ..|
T Consensus        53 ~el~~i~ls~N~fk-~fp~-kft~kf~t~t~lNl~~neis-------------dvPeE~Aam~aLr~lNl~~N~l~-~~p  116 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPK-KFTIKFPTATTLNLANNEIS-------------DVPEELAAMPALRSLNLRFNPLN-AEP  116 (177)
T ss_pred             ceEEEEecccchhh-hCCH-HHhhccchhhhhhcchhhhh-------------hchHHHhhhHHhhhcccccCccc-cch
Confidence            37888999999988 4555 444 4557888999999886             67888999999999999999999 888


Q ss_pred             hhhhCccccCceeccccccc
Q 047948          137 QEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .-+..+.++.+|+..+|..-
T Consensus       117 ~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  117 RVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             HHHHHHHhHHHhcCCCCccc
Confidence            88888888888888888664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.72  E-value=1e-05  Score=71.91  Aligned_cols=96  Identities=30%  Similarity=0.366  Sum_probs=72.4

Q ss_pred             CEEEEEcCCCc--cceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948           59 RVVGINLTSMS--LNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP  136 (171)
Q Consensus        59 ~v~~L~l~~~~--l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P  136 (171)
                      .+++|-+.+|.  +. .++..-|..++.|++||+++|.--            +.+|..++.+-+|++|++++..++ .+|
T Consensus       546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l------------~~LP~~I~~Li~LryL~L~~t~I~-~LP  611 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSL------------SKLPSSIGELVHLRYLDLSDTGIS-HLP  611 (889)
T ss_pred             ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCcc------------CcCChHHhhhhhhhcccccCCCcc-ccc
Confidence            57777777775  33 333313677999999999986533            367788999999999999999999 999


Q ss_pred             hhhhCccccCceecccccccc------ccchhhhcccc
Q 047948          137 QEVGQLTFLNHLILDLIFLIF------WMVQSLVLLAI  168 (171)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~------~~~~~L~~L~l  168 (171)
                      ..+++++.|.+|++..+....      ..+.+|++|.+
T Consensus       612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL  649 (889)
T ss_pred             hHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence            999999999999998776432      22667777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.68  E-value=1.5e-05  Score=64.66  Aligned_cols=79  Identities=27%  Similarity=0.441  Sum_probs=56.7

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE  138 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~  138 (171)
                      +++.++++.|.+. .+|. .+..++.|+.|+++.|.+.             .+|...+.++.|+.|++++|+++ .+|..
T Consensus       141 nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~-------------~l~~~~~~~~~L~~L~ls~N~i~-~l~~~  204 (394)
T COG4886         141 NLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLS-------------DLPKLLSNLSNLNNLDLSGNKIS-DLPPE  204 (394)
T ss_pred             hcccccccccchh-hhhh-hhhccccccccccCCchhh-------------hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence            6899999999988 6655 6899999999999999997             34444445566666666666666 66655


Q ss_pred             hhCccccCceecccc
Q 047948          139 VGQLTFLNHLILDLI  153 (171)
Q Consensus       139 ~~~l~~L~~L~Ls~N  153 (171)
                      +..+..|+++.+++|
T Consensus       205 ~~~~~~L~~l~~~~N  219 (394)
T COG4886         205 IELLSALEELDLSNN  219 (394)
T ss_pred             hhhhhhhhhhhhcCC
Confidence            544445666666666

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.58  E-value=4.5e-06  Score=69.66  Aligned_cols=48  Identities=27%  Similarity=0.464  Sum_probs=35.5

Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhC---ccccCceecccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQ---LTFLNHLILDLI  153 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~---l~~L~~L~Ls~N  153 (171)
                      .|+++ .+|..|.+|+.|++|-|.+|-+. .-|..+.-   ..=.+||+....
T Consensus       220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            45555 68999999999999999999999 77776543   333456655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.57  E-value=3.2e-06  Score=72.41  Aligned_cols=47  Identities=28%  Similarity=0.448  Sum_probs=25.4

Q ss_pred             CCEEecccCcccccCChhhhCccccCceeccccccc-------cccchhhhccccc
Q 047948          121 LTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAIW  169 (171)
Q Consensus       121 L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~  169 (171)
                      |+.|.+.+|.++ .+- .+.++++|+.||+++|-+.       .+.+.+|+.|.|.
T Consensus       234 L~~L~lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le  287 (1096)
T KOG1859|consen  234 LQLLNLRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE  287 (1096)
T ss_pred             heeeeecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence            555555555444 221 2445666777777777665       3444556666553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.46  E-value=6.4e-05  Score=61.62  Aligned_cols=80  Identities=23%  Similarity=0.213  Sum_probs=49.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE  138 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~  138 (171)
                      .++.+++..|.+.....  .+..+..|++|++++|.++...              .+..++.|+.|++++|.++ .+.. 
T Consensus        96 ~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~N~I~~i~--------------~l~~l~~L~~L~l~~N~i~-~~~~-  157 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSFNKITKLE--------------GLSTLTLLKELNLSGNLIS-DISG-  157 (414)
T ss_pred             ceeeeeccccchhhccc--chhhhhcchheecccccccccc--------------chhhccchhhheeccCcch-hccC-
Confidence            67788888888773322  2566778888888888776321              2344455666666666666 3332 


Q ss_pred             hhCccccCceeccccccc
Q 047948          139 VGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       139 ~~~l~~L~~L~Ls~N~l~  156 (171)
                      +..+..|+.+++++|.+.
T Consensus       158 ~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  158 LESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             CccchhhhcccCCcchhh
Confidence            334566666666666665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.45  E-value=1.1e-05  Score=69.25  Aligned_cols=41  Identities=29%  Similarity=0.143  Sum_probs=18.7

Q ss_pred             ccCCcCCCEEecccCcccccCC-hhhhCccccCceecccccc
Q 047948          115 IGLLTHLTVLHISRNQLNGSIP-QEVGQLTFLNHLILDLIFL  155 (171)
Q Consensus       115 ~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~L~Ls~N~l  155 (171)
                      +.++.+|+.||++.|-+++.-- ..++.+.+|+.|+|.+|.+
T Consensus       250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            3444555555555555543211 1234444555555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.35  E-value=8.2e-06  Score=56.75  Aligned_cols=88  Identities=22%  Similarity=0.303  Sum_probs=65.0

Q ss_pred             eCCCCCEEEEEcCCCccceecCCC--CCCCCCCCcEEEeecCcccccccccccccccccCCccc-cCCcCCCEEecccCc
Q 047948           54 CNHAGRVVGINLTSMSLNGTLLEF--PFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEI-GLLTHLTVLHISRNQ  130 (171)
Q Consensus        54 c~~~~~v~~L~l~~~~l~~~~p~~--~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~-~~l~~L~~L~ls~N~  130 (171)
                      |..+.....++|+++++- .+++.  .+.....|+.+++++|.+.             .+|+.| ...+-++.+++++|.
T Consensus        23 cedakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-------------~fp~kft~kf~t~t~lNl~~ne   88 (177)
T KOG4579|consen   23 CEDAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-------------KFPKKFTIKFPTATTLNLANNE   88 (177)
T ss_pred             hHHHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-------------hCCHHHhhccchhhhhhcchhh
Confidence            333335566777777653 23320  3455567777899999987             344444 344578999999999


Q ss_pred             ccccCChhhhCccccCceeccccccc
Q 047948          131 LNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       131 l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++ .+|.++..++.|+.|+++.|.|.
T Consensus        89 is-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   89 IS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             hh-hchHHHhhhHHhhhcccccCccc
Confidence            99 99999999999999999999997

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.30  E-value=9.8e-05  Score=65.76  Aligned_cols=83  Identities=25%  Similarity=0.254  Sum_probs=71.9

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      ..++.|||++|.--+.+|. +++.|-+|++|+++...+.             .+|..++++..|.+|++..+.....+|.
T Consensus       571 ~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-------------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~  636 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-------------HLPSGLGNLKKLIYLNLEVTGRLESIPG  636 (889)
T ss_pred             cceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-------------ccchHHHHHHhhheeccccccccccccc
Confidence            3789999999877778999 9999999999999999886             6889999999999999998887767777


Q ss_pred             hhhCccccCceeccccc
Q 047948          138 EVGQLTFLNHLILDLIF  154 (171)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~  154 (171)
                      ....|++|++|.+..-.
T Consensus       637 i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  637 ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhcccccEEEeeccc
Confidence            77779999999886554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.22  E-value=0.00047  Score=50.93  Aligned_cols=93  Identities=24%  Similarity=0.282  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccc-cCCcCCCEEecccCcccccCCh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEI-GLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~-~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      +...|||+.|.+. .++  .|..++.|..|.+++|+++..-|             .+ ..++.|..|.+.+|.+. .+-+
T Consensus        43 ~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p-------------~L~~~~p~l~~L~LtnNsi~-~l~d  105 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDP-------------DLDTFLPNLKTLILTNNSIQ-ELGD  105 (233)
T ss_pred             ccceecccccchh-hcc--cCCCccccceEEecCCcceeecc-------------chhhhccccceEEecCcchh-hhhh
Confidence            5678999999976 333  37788999999999999984322             23 24567889999998887 3322


Q ss_pred             --hhhCccccCceeccccccc---------cccchhhhcccc
Q 047948          138 --EVGQLTFLNHLILDLIFLI---------FWMVQSLVLLAI  168 (171)
Q Consensus       138 --~~~~l~~L~~L~Ls~N~l~---------~~~~~~L~~L~l  168 (171)
                        -+..+++|++|.+-+|+..         ...+++|+.||.
T Consensus       106 l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF  147 (233)
T KOG1644|consen  106 LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF  147 (233)
T ss_pred             cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeeh
Confidence              2567889999999999887         566778888775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.07  E-value=0.00023  Score=33.46  Aligned_cols=21  Identities=38%  Similarity=0.585  Sum_probs=15.0

Q ss_pred             CCCEEecccCcccccCChhhhC
Q 047948          120 HLTVLHISRNQLNGSIPQEVGQ  141 (171)
Q Consensus       120 ~L~~L~ls~N~l~g~~P~~~~~  141 (171)
                      +|++||+++|+++ .+|+.|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4677788888777 77776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00011  Score=59.79  Aligned_cols=100  Identities=22%  Similarity=0.158  Sum_probs=48.5

Q ss_pred             CEEEEEcCCCccceecCCC-CCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC-
Q 047948           59 RVVGINLTSMSLNGTLLEF-PFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP-  136 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~-~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P-  136 (171)
                      +|+.|+|+.|-+..--+-. -...|++|+.|.++.|++.-....    ..       -..+++|+.|.++++.|+..-- 
T Consensus       147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----~~-------~~~l~~lK~L~l~~CGls~k~V~  215 (505)
T KOG3207|consen  147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----NT-------TLLLSHLKQLVLNSCGLSWKDVQ  215 (505)
T ss_pred             cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----cc-------hhhhhhhheEEeccCCCCHHHHH
Confidence            6777777776654211100 123467777777777776521111    00       1134555666666666553211 


Q ss_pred             hhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          137 QEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      .....+|+|+.|+|..|...      ..++..|++|+|.
T Consensus       216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs  254 (505)
T KOG3207|consen  216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS  254 (505)
T ss_pred             HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence            12234455555555555211      3444455555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.82  E-value=0.00079  Score=55.20  Aligned_cols=92  Identities=27%  Similarity=0.336  Sum_probs=67.6

Q ss_pred             EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhh
Q 047948           60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEV  139 (171)
Q Consensus        60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~  139 (171)
                      +..+.+..|.+.. +-. .+..++.|..|++..|.+..             +...+..+.+|++|++++|.++...+  +
T Consensus        74 l~~l~l~~n~i~~-~~~-~l~~~~~l~~l~l~~n~i~~-------------i~~~l~~~~~L~~L~ls~N~I~~i~~--l  136 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILN-HLSKLKSLEALDLYDNKIEK-------------IENLLSSLVNLQVLDLSFNKITKLEG--L  136 (414)
T ss_pred             HHhhccchhhhhh-hhc-ccccccceeeeeccccchhh-------------cccchhhhhcchheeccccccccccc--h
Confidence            4445566666653 222 47888999999999999873             22226788999999999999994433  5


Q ss_pred             hCccccCceeccccccc----cccchhhhcccc
Q 047948          140 GQLTFLNHLILDLIFLI----FWMVQSLVLLAI  168 (171)
Q Consensus       140 ~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l  168 (171)
                      ..++.|+.|++++|.+.    ...+..|..+++
T Consensus       137 ~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen  137 STLTLLKELNLSGNLISDISGLESLKSLKLLDL  169 (414)
T ss_pred             hhccchhhheeccCcchhccCCccchhhhcccC
Confidence            56777999999999998    444677777766

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.00022  Score=58.01  Aligned_cols=111  Identities=24%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccc--------ccccc-----cccccccCCccccCCcCCCE
Q 047948           57 AGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI--------ILPQI-----TNKLSGQIPSEIGLLTHLTV  123 (171)
Q Consensus        57 ~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~--------~p~~~-----~n~l~g~~p~~~~~l~~L~~  123 (171)
                      -.+++.|+++.|.+.......--..++.|+.|.++.|.++-.        .|..-     .|...+.--....-+..|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            347888888888876433331223567788888888877621        11110     33211111112234567888


Q ss_pred             EecccCcccccCC--hhhhCccccCceeccccccc------c------ccchhhhcccc
Q 047948          124 LHISRNQLNGSIP--QEVGQLTFLNHLILDLIFLI------F------WMVQSLVLLAI  168 (171)
Q Consensus       124 L~ls~N~l~g~~P--~~~~~l~~L~~L~Ls~N~l~------~------~~~~~L~~L~l  168 (171)
                      |||++|++- ..+  ...+.++.|..|+++.+.+.      .      ..+++|++|++
T Consensus       251 LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i  308 (505)
T KOG3207|consen  251 LDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNI  308 (505)
T ss_pred             ccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeec
Confidence            888888887 555  34667788888888888776      2      45667777776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.74  E-value=0.00084  Score=51.14  Aligned_cols=94  Identities=24%  Similarity=0.254  Sum_probs=61.4

Q ss_pred             EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh-
Q 047948           60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE-  138 (171)
Q Consensus        60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~-  138 (171)
                      +..+.+.+..++. +.  .+..|+.|+.|.++.|.+..          ++.++.-.-.+++|+++.+++|++.-  +.. 
T Consensus        45 le~ls~~n~gltt-~~--~~P~Lp~LkkL~lsdn~~~~----------~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl  109 (260)
T KOG2739|consen   45 LELLSVINVGLTT-LT--NFPKLPKLKKLELSDNYRRV----------SGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL  109 (260)
T ss_pred             hhhhhhhccceee-cc--cCCCcchhhhhcccCCcccc----------cccceehhhhCCceeEEeecCCcccc--cccc
Confidence            4444445544441 11  46678889999999995432          12233333455999999999999872  333 


Q ss_pred             --hhCccccCceeccccccc---------cccchhhhcccc
Q 047948          139 --VGQLTFLNHLILDLIFLI---------FWMVQSLVLLAI  168 (171)
Q Consensus       139 --~~~l~~L~~L~Ls~N~l~---------~~~~~~L~~L~l  168 (171)
                        +..+.+|..|++.++..+         +..+++|++|+-
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence              345667788888887665         677778888764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.67  E-value=0.001  Score=50.74  Aligned_cols=63  Identities=22%  Similarity=0.224  Sum_probs=48.2

Q ss_pred             CCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccC--cccccCChhhhCccccCceeccccccc
Q 047948           80 SSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRN--QLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus        80 ~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N--~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      -.+..|+.+.+.+..++.             + ..+..|++|+.|+++.|  +..+.++.-...+++|+++++++|++.
T Consensus        40 d~~~~le~ls~~n~gltt-------------~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTT-------------L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccchhhhhhhccceee-------------c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            344556666666666541             1 34668899999999999  777777777777899999999999998

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.58  E-value=0.0032  Score=46.58  Aligned_cols=73  Identities=21%  Similarity=0.203  Sum_probs=54.7

Q ss_pred             CCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------
Q 047948           83 PHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------  156 (171)
Q Consensus        83 ~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------  156 (171)
                      .....+||++|.+..             + ..+..++.|..|.++.|+++..-|.--.-++.|..|.|++|.++      
T Consensus        42 d~~d~iDLtdNdl~~-------------l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~  107 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK-------------L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD  107 (233)
T ss_pred             cccceecccccchhh-------------c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc
Confidence            456678999998752             1 45778899999999999999555544445678999999999998      


Q ss_pred             -cccchhhhccccc
Q 047948          157 -FWMVQSLVLLAIW  169 (171)
Q Consensus       157 -~~~~~~L~~L~l~  169 (171)
                       ...++.|++|.+.
T Consensus       108 pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen  108 PLASCPKLEYLTLL  121 (233)
T ss_pred             hhccCCccceeeec
Confidence             3445577777653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.40  E-value=0.0012  Score=57.59  Aligned_cols=37  Identities=14%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             CEEEEEcCCCcccee-cCCCCCCCCCCCcEEEeecCccc
Q 047948           59 RVVGINLTSMSLNGT-LLEFPFSSFPHLAYLVLYNNELF   96 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~-~p~~~l~~L~~L~~L~l~~n~l~   96 (171)
                      .+++|.+.+..+... ... ...++++|..||+|+.+++
T Consensus       149 sL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  149 SLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             ccceEEecCceecchhHHH-HhhccCccceeecCCCCcc
Confidence            466666666554322 112 3456677777777777665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.35  E-value=7.5e-05  Score=56.37  Aligned_cols=83  Identities=18%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      .+++.||++.|++. .+.. .|.-++.|..|+++.|.+.             ..|..++....++.+++..|..+ ..|.
T Consensus        42 kr~tvld~~s~r~v-n~~~-n~s~~t~~~rl~~sknq~~-------------~~~~d~~q~~e~~~~~~~~n~~~-~~p~  105 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGK-NFSILTRLVRLDLSKNQIK-------------FLPKDAKQQRETVNAASHKNNHS-QQPK  105 (326)
T ss_pred             ceeeeehhhhhHHH-hhcc-chHHHHHHHHHhccHhhHh-------------hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence            38999999999976 3444 5788889999999998876             57788888889999999999888 8999


Q ss_pred             hhhCccccCceeccccccc
Q 047948          138 EVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +++..+.++++++-.|.|.
T Consensus       106 s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccccCCcchhhhccCcch
Confidence            9999999999999988876

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.10  E-value=0.0012  Score=51.71  Aligned_cols=85  Identities=22%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             CEEEEEcCCCccce--ecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948           59 RVVGINLTSMSLNG--TLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP  136 (171)
Q Consensus        59 ~v~~L~l~~~~l~~--~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P  136 (171)
                      +|..+||.+|.++.  .+.. -+..|+.|+.|+++.|.+...|-         ..|   ..+.+|+.|-|.+..+.+..-
T Consensus        72 ~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~---------~lp---~p~~nl~~lVLNgT~L~w~~~  138 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIK---------SLP---LPLKNLRVLVLNGTGLSWTQS  138 (418)
T ss_pred             hhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccc---------cCc---ccccceEEEEEcCCCCChhhh
Confidence            78999999999873  2333 35678999999999999874332         233   245678888888877776544


Q ss_pred             h-hhhCccccCceeccccccc
Q 047948          137 Q-EVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       137 ~-~~~~l~~L~~L~Ls~N~l~  156 (171)
                      . .+..++.++.|+++.|++.
T Consensus       139 ~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  139 TSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             hhhhhcchhhhhhhhccchhh
Confidence            4 3567788888888888554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.81  E-value=0.0019  Score=51.25  Aligned_cols=109  Identities=17%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             CEEEEEcCCCccceecCCCC----CCCCCCCcEEEeecCccccc---c-cc---------------cc------cccccc
Q 047948           59 RVVGINLTSMSLNGTLLEFP----FSSFPHLAYLVLYNNELFYI---I-LP---------------QI------TNKLSG  109 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~----l~~L~~L~~L~l~~n~l~g~---~-p~---------------~~------~n~l~g  109 (171)
                      +++.|+|+.|.+.-..++ .    +..+..|++|.+.+|.+.-.   . -.               .+      .|++..
T Consensus        93 ~L~~ldLSDNA~G~~g~~-~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIR-GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             ceeEeeccccccCccchH-HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            788888888877633222 2    34567778888887776411   0 00               00      333322


Q ss_pred             c----CCccccCCcCCCEEecccCcccc--c--CChhhhCccccCceeccccccc----------cccchhhhcccc
Q 047948          110 Q----IPSEIGLLTHLTVLHISRNQLNG--S--IPQEVGQLTFLNHLILDLIFLI----------FWMVQSLVLLAI  168 (171)
Q Consensus       110 ~----~p~~~~~l~~L~~L~ls~N~l~g--~--~P~~~~~l~~L~~L~Ls~N~l~----------~~~~~~L~~L~l  168 (171)
                      .    +-..+...+.|+.+.+++|.+.-  .  +-..+..+++|++|||.+|-|+          ....++|++|++
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            1    11223344566666666665541  1  1123566777888888888776          334445555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.41  E-value=0.0092  Score=26.06  Aligned_cols=13  Identities=38%  Similarity=0.629  Sum_probs=5.5

Q ss_pred             CCCEEecccCccc
Q 047948          120 HLTVLHISRNQLN  132 (171)
Q Consensus       120 ~L~~L~ls~N~l~  132 (171)
                      +|+.|++++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555554

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.87  E-value=0.00078  Score=52.24  Aligned_cols=77  Identities=21%  Similarity=0.223  Sum_probs=43.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE  138 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~  138 (171)
                      -|..|.|+-|.++ .+.  .+..++.|++|+|..|.+...-          ++ ..+.++++|+.|.|..|...|.-+..
T Consensus        42 ~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sld----------EL-~YLknlpsLr~LWL~ENPCc~~ag~n  107 (388)
T KOG2123|consen   42 LLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLD----------EL-EYLKNLPSLRTLWLDENPCCGEAGQN  107 (388)
T ss_pred             cceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHH----------HH-HHHhcCchhhhHhhccCCcccccchh
Confidence            4566666666665 222  2556667777777766654210          01 23456677777777777776665543


Q ss_pred             -----hhCccccCcee
Q 047948          139 -----VGQLTFLNHLI  149 (171)
Q Consensus       139 -----~~~l~~L~~L~  149 (171)
                           +.-+++|+.||
T Consensus       108 YR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  108 YRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHHHcccchhcc
Confidence                 23455555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.65  E-value=0.034  Score=26.82  Aligned_cols=20  Identities=45%  Similarity=0.665  Sum_probs=14.4

Q ss_pred             CcCCCEEecccCcccccCChh
Q 047948          118 LTHLTVLHISRNQLNGSIPQE  138 (171)
Q Consensus       118 l~~L~~L~ls~N~l~g~~P~~  138 (171)
                      +++|+.|++++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456788888888887 66654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.65  E-value=0.034  Score=26.82  Aligned_cols=20  Identities=45%  Similarity=0.665  Sum_probs=14.4

Q ss_pred             CcCCCEEecccCcccccCChh
Q 047948          118 LTHLTVLHISRNQLNGSIPQE  138 (171)
Q Consensus       118 l~~L~~L~ls~N~l~g~~P~~  138 (171)
                      +++|+.|++++|+++ .+|..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456788888888887 66654

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.63  E-value=0.091  Score=43.22  Aligned_cols=10  Identities=20%  Similarity=0.175  Sum_probs=5.7

Q ss_pred             CCcEEEeecC
Q 047948           84 HLAYLVLYNN   93 (171)
Q Consensus        84 ~L~~L~l~~n   93 (171)
                      .|+.|++++|
T Consensus        95 nLe~L~Ls~C  104 (426)
T PRK15386         95 GLEKLTVCHC  104 (426)
T ss_pred             hhhheEccCc
Confidence            4555555555

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.19  E-value=0.08  Score=43.54  Aligned_cols=13  Identities=0%  Similarity=0.059  Sum_probs=6.8

Q ss_pred             CEEEEEcCCCccc
Q 047948           59 RVVGINLTSMSLN   71 (171)
Q Consensus        59 ~v~~L~l~~~~l~   71 (171)
                      +.+.|+++++.++
T Consensus        53 ~l~~L~Is~c~L~   65 (426)
T PRK15386         53 ASGRLYIKDCDIE   65 (426)
T ss_pred             CCCEEEeCCCCCc
Confidence            3455555555444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.62  E-value=0.038  Score=48.43  Aligned_cols=62  Identities=15%  Similarity=0.207  Sum_probs=35.4

Q ss_pred             CEEEEEcCCCccc-eecCCCCC-CCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCccc
Q 047948           59 RVVGINLTSMSLN-GTLLEFPF-SSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLN  132 (171)
Q Consensus        59 ~v~~L~l~~~~l~-~~~p~~~l-~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~  132 (171)
                      ++..|++++...- ...+. .+ .-|+.|+.|.+.+-.+...           ..-.-...+++|..||+|+.+++
T Consensus       123 nL~~LdI~G~~~~s~~W~~-kig~~LPsL~sL~i~~~~~~~~-----------dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPK-KIGTMLPSLRSLVISGRQFDND-----------DFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             hhhhcCccccchhhccHHH-HHhhhCcccceEEecCceecch-----------hHHHHhhccCccceeecCCCCcc
Confidence            5666777665432 11222 22 2477888888887665421           11122356677888888887776

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.67  E-value=0.047  Score=42.53  Aligned_cols=96  Identities=18%  Similarity=0.176  Sum_probs=58.4

Q ss_pred             CEEEEEcCCCccceecCC---CCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccC
Q 047948           59 RVVGINLTSMSLNGTLLE---FPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSI  135 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~---~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~  135 (171)
                      .++.++|++|.+...-..   ..+.+-.+|+...++.- ++|..-..+.-.+.- +-+.+.++++|+..+||.|.|.-..
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~-Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVM-LLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHH-HHHHHhcCCcceeeeccccccCccc
Confidence            678899999887632111   02344455666655543 222221111111111 1134567889999999999998888


Q ss_pred             Chhhh----CccccCceeccccccc
Q 047948          136 PQEVG----QLTFLNHLILDLIFLI  156 (171)
Q Consensus       136 P~~~~----~l~~L~~L~Ls~N~l~  156 (171)
                      |+.++    +.+.|.+|.+++|.+.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCC
Confidence            87654    4567899999999876

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=91.73  E-value=0.07  Score=42.64  Aligned_cols=42  Identities=17%  Similarity=0.059  Sum_probs=18.4

Q ss_pred             ccCCcCCCEEecccCcccccCChhh-----hCccccCceeccccccc
Q 047948          115 IGLLTHLTVLHISRNQLNGSIPQEV-----GQLTFLNHLILDLIFLI  156 (171)
Q Consensus       115 ~~~l~~L~~L~ls~N~l~g~~P~~~-----~~l~~L~~L~Ls~N~l~  156 (171)
                      +..+++|+.|.++++.++..=-..|     ...++|++|.+.+|.++
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            3344455555555555442211111     12345555555555554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.09  E-value=0.077  Score=25.01  Aligned_cols=14  Identities=21%  Similarity=0.005  Sum_probs=6.4

Q ss_pred             cccCceeccccccc
Q 047948          143 TFLNHLILDLIFLI  156 (171)
Q Consensus       143 ~~L~~L~Ls~N~l~  156 (171)
                      ++|++|+|++|+|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34555555555554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.17  E-value=0.11  Score=40.98  Aligned_cols=72  Identities=29%  Similarity=0.357  Sum_probs=49.1

Q ss_pred             ccceeeC--CCCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEec
Q 047948           49 WSGIHCN--HAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        49 w~gv~c~--~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      |.-|.|.  .-.+++.|+++.|++...+.. .-..+.+|+.|.|.+..+.-.           ..-..+..++.++.|.+
T Consensus        86 WseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~-----------~~~s~l~~lP~vtelHm  153 (418)
T KOG2982|consen   86 WSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLVLNGTGLSWT-----------QSTSSLDDLPKVTELHM  153 (418)
T ss_pred             HHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEEEcCCCCChh-----------hhhhhhhcchhhhhhhh
Confidence            6655554  456899999999999866654 225778899999988776421           11233456677778888


Q ss_pred             ccCccc
Q 047948          127 SRNQLN  132 (171)
Q Consensus       127 s~N~l~  132 (171)
                      |.|.+.
T Consensus       154 S~N~~r  159 (418)
T KOG2982|consen  154 SDNSLR  159 (418)
T ss_pred             ccchhh
Confidence            877443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.17  E-value=0.0073  Score=45.89  Aligned_cols=69  Identities=22%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             cCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccc
Q 047948           74 LLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI  153 (171)
Q Consensus        74 ~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N  153 (171)
                      +|-.++..+...+.||++.|++.             .+-..+..++.|..||++.|++. .+|..++....+..+++..|
T Consensus        33 ~~v~ei~~~kr~tvld~~s~r~v-------------n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n   98 (326)
T KOG0473|consen   33 IPVREIASFKRVTVLDLSSNRLV-------------NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKN   98 (326)
T ss_pred             cchhhhhccceeeeehhhhhHHH-------------hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhcc
Confidence            34336778888999999999875             33456778899999999999999 99999999999999999999


Q ss_pred             ccc
Q 047948          154 FLI  156 (171)
Q Consensus       154 ~l~  156 (171)
                      ..+
T Consensus        99 ~~~  101 (326)
T KOG0473|consen   99 NHS  101 (326)
T ss_pred             chh
Confidence            876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=89.72  E-value=0.3  Score=38.19  Aligned_cols=37  Identities=30%  Similarity=0.327  Sum_probs=25.5

Q ss_pred             CEEEEEcCCCccceecCCCCC----CCCCCCcEEEeecCccc
Q 047948           59 RVVGINLTSMSLNGTLLEFPF----SSFPHLAYLVLYNNELF   96 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l----~~L~~L~~L~l~~n~l~   96 (171)
                      ++..++|+.|.+....|+ .+    ..-+.|.+|.+++|.+-
T Consensus        93 ~l~~v~LSDNAfg~~~~e-~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          93 RLQKVDLSDNAFGSEFPE-ELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cceeeeccccccCcccch-HHHHHHhcCCCceeEEeecCCCC
Confidence            677888888887755554 43    34466788888888764

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.57  E-value=0.29  Score=23.81  Aligned_cols=18  Identities=44%  Similarity=0.707  Sum_probs=14.0

Q ss_pred             cCCCEEecccCcccccCCh
Q 047948          119 THLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus       119 ~~L~~L~ls~N~l~g~~P~  137 (171)
                      .+|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            36788888888888 7776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.65  E-value=0.15  Score=39.90  Aligned_cols=80  Identities=23%  Similarity=0.211  Sum_probs=61.1

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh-
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ-  137 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~-  137 (171)
                      .|+.|+.=++++. .+.-  ...++.|++|.|+-|+++..              ..+..+++|++|.|..|.+. .+.+ 
T Consensus        20 ~vkKLNcwg~~L~-DIsi--c~kMp~lEVLsLSvNkIssL--------------~pl~rCtrLkElYLRkN~I~-sldEL   81 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DISI--CEKMPLLEVLSLSVNKISSL--------------APLQRCTRLKELYLRKNCIE-SLDEL   81 (388)
T ss_pred             HhhhhcccCCCcc-HHHH--HHhcccceeEEeeccccccc--------------hhHHHHHHHHHHHHHhcccc-cHHHH
Confidence            4566666666665 2322  45789999999999998732              34678899999999999888 5544 


Q ss_pred             -hhhCccccCceeccccccc
Q 047948          138 -EVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       138 -~~~~l~~L~~L~Ls~N~l~  156 (171)
                       -+.++++|+.|.|..|.-.
T Consensus        82 ~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   82 EYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HHHhcCchhhhHhhccCCcc
Confidence             3678999999999999876

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=86.64  E-value=0.053  Score=42.77  Aligned_cols=110  Identities=26%  Similarity=0.285  Sum_probs=62.1

Q ss_pred             CEEEEEcCCCc-cceecCCCCCCCCCCCcEEEeecCcccccccccc---------cccccc--------cCCccccCCcC
Q 047948           59 RVVGINLTSMS-LNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TNKLSG--------QIPSEIGLLTH  120 (171)
Q Consensus        59 ~v~~L~l~~~~-l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n~l~g--------~~p~~~~~l~~  120 (171)
                      .+++++++... ++..--..-+.+++.|..|+++.+.+....-..+         .-+++|        .+..-...+++
T Consensus       235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~  314 (419)
T KOG2120|consen  235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN  314 (419)
T ss_pred             cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence            56666666532 2211000024567778888888877664432111         111222        12122356788


Q ss_pred             CCEEecccCcc-cccCChhhhCccccCceeccccccc-------cccchhhhcccc
Q 047948          121 LTVLHISRNQL-NGSIPQEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAI  168 (171)
Q Consensus       121 L~~L~ls~N~l-~g~~P~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l  168 (171)
                      |.+||||.+.. +...-.+|.+++.|++|.++....-       ....++|.+|++
T Consensus       315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDV  370 (419)
T ss_pred             eeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEe
Confidence            99999997653 3334445677888888888876543       455667777776

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.96  E-value=0.061  Score=42.45  Aligned_cols=14  Identities=29%  Similarity=0.185  Sum_probs=11.1

Q ss_pred             CCcEEEeecCcccc
Q 047948           84 HLAYLVLYNNELFY   97 (171)
Q Consensus        84 ~L~~L~l~~n~l~g   97 (171)
                      .|++|||++..++.
T Consensus       186 Rlq~lDLS~s~it~  199 (419)
T KOG2120|consen  186 RLQHLDLSNSVITV  199 (419)
T ss_pred             hhHHhhcchhheeH
Confidence            58889999887764

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.32  E-value=1  Score=21.89  Aligned_cols=14  Identities=36%  Similarity=0.608  Sum_probs=8.1

Q ss_pred             cCCCEEecccCccc
Q 047948          119 THLTVLHISRNQLN  132 (171)
Q Consensus       119 ~~L~~L~ls~N~l~  132 (171)
                      ++|+.|+++.|+++
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45566666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=82.62  E-value=4.8  Score=26.64  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=15.4

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecC
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNN   93 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n   93 (171)
                      +++.+.+.. .+. .++...|..++.|+.+.+..+
T Consensus        13 ~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~   45 (129)
T PF13306_consen   13 NLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN   45 (129)
T ss_dssp             T--EEEETS-T---EE-TTTTTT-TT-SEEEESST
T ss_pred             CCCEEEECC-Cee-EeChhhccccccccccccccc
Confidence            466666663 344 344336677767777777654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=80.56  E-value=1.3  Score=21.65  Aligned_cols=13  Identities=38%  Similarity=0.542  Sum_probs=6.4

Q ss_pred             CCCEEecccCccc
Q 047948          120 HLTVLHISRNQLN  132 (171)
Q Consensus       120 ~L~~L~ls~N~l~  132 (171)
                      .|++|||++|.+.
T Consensus         3 ~L~~LdL~~N~i~   15 (28)
T smart00368        3 SLRELDLSNNKLG   15 (28)
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-06

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 91  YNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           ++N    + L    N LSG IP EIG + +L +L++  N ++GSIP EVG L  LN  IL
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN--IL 685
Query: 151 DL 152
           DL
Sbjct: 686 DL 687

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 91  YNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           ++N    + L    N LSG IP EIG + +L +L++  N ++GSIP EVG L  LN  IL
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN--IL 682
Query: 151 DL 152
           DL
Sbjct: 683 DL 684

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-24
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 93.8 bits (234), Expect = 8e-24
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 23/158 (14%)

Query: 11  EEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCN---HAGRVVGINLTS 67
           ++  AL++ K  L   + + L SW  +    T      W G+ C+      RV  ++L+ 
Sbjct: 6   QDKQALLQIKKDL--GNPTTLSSWLPT----TDCCNRTWLGVLCDTDTQTYRVNNLDLSG 59

Query: 68  MSLNGTLLEFP-FSSFPHLAYLVLYN-NELFYIILPQIT------------NKLSGQIPS 113
           ++L          ++ P+L +L +   N L   I P I               +SG IP 
Sbjct: 60  LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

Query: 114 EIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
            +  +  L  L  S N L+G++P  +  L  L  +  D
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 14/86 (16%)

Query: 79  FSSFPHLAYLVLYNNELFYIILPQI-------------TNKLSGQIPSEIGLLTHLTVLH 125
            SS P+L  +    N +   I                  N+L+G+IP     L  L  + 
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203

Query: 126 ISRNQLNGSIPQEVGQLTFLNHLILD 151
           +SRN L G      G       + L 
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLA 229

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.6 bits (135), Expect = 5e-10
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 13/84 (15%)

Query: 79  FSSFPHLA-YLVLYNNELFYIILPQI-----------TNKLSGQIPSEIGLLTHLTVLHI 126
           + SF  L   + +  N L   I P              N L G      G   +   +H+
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 127 SRNQLNGSIPQEVGQLTFLNHLIL 150
           ++N L   +  +VG    LN L L
Sbjct: 229 AKNSLAFDLG-KVGLSKNLNGLDL 251

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.6 bits (122), Expect = 3e-08
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 16/90 (17%)

Query: 64  NLTSMSLNGTLLEFPFSSF---PHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTH 120
           N   + L    L F         +L  L L NN            ++ G +P  +  L  
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN------------RIYGTLPQGLTQLKF 269

Query: 121 LTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           L  L++S N L G IPQ  G L   +    
Sbjct: 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.1 bits (227), Expect = 4e-22
 Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 27/150 (18%)

Query: 6   SSNSIE-EGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGIN 64
            S S+  E H L+ +K  L    ++LL  W  +       +PC + G+ C    +V  I+
Sbjct: 6   PSQSLYREIHQLISFKDVL--PDKNLLPDWSSNK------NPCTFDGVTCRD-DKVTSID 56

Query: 65  LTSMSLNGTLLEFP--FSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLT 122
           L+S  LN           S   L  L L N+             ++G +         LT
Sbjct: 57  LSSKPLNVGFSAVSSSLLSLTGLESLFLSNS------------HINGSVS-GFKCSASLT 103

Query: 123 VLHISRNQLNGSIP--QEVGQLTFLNHLIL 150
            L +SRN L+G +     +G  + L  L +
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 36  LSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNEL 95
           LS+ +++  +      +  +  G +  + ++   ++G +     S   +L +L + +N  
Sbjct: 158 LSANSISGANV--VGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDVSSNNF 212

Query: 96  FYII-----LPQIT------NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTF 144
              I        +       NKLSG     I   T L +L+IS NQ  G IP     L  
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270

Query: 145 LNHLIL 150
           L +L L
Sbjct: 271 LQYLSL 276

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 4e-12
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 64  NLTSMSLNGTLL--EFPFSSFPHLAYLVLYNNELFYIILPQIT-------------NKLS 108
            L  ++++        P      L YL L  N+    I   ++             N   
Sbjct: 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 109 GQIPSEIGLLTHLTVLHISRNQLNGSIPQEV-GQLTFLNHLIL 150
           G +P   G  + L  L +S N  +G +P +   ++  L  L L
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 9e-12
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 79  FSSFPHLAYLVLYNNELFYIILPQIT------------NKLSGQIPSEIGLLTHLTVLHI 126
            +         + +        P               N LSG IP EIG + +L +L++
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663

Query: 127 SRNQLNGSIPQEVGQLTFLNHLIL 150
             N ++GSIP EVG L  LN L L
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDL 687

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 63  INLTSMSLNGTL-LEFPFSSFPHLAYLVLYNNELFYIILPQIT------------NKLSG 109
           ++L+S + +G +      +    L  L L NN     I P ++            N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 110 QIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
            IPS +G L+ L  L +  N L G IPQE+  +  L  LILD
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 69  SLNGTLLEFPFSSFPHLAYLVLYNN--------ELFYIILPQIT------NKLSGQIPSE 114
             +G L E   +    L  L L +N         L       +       N  +G+IP  
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413

Query: 115 IGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           +   + L  LH+S N L+G+IP  +G L+ L  L L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.8 bits (143), Expect = 6e-11
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 79  FSSFPHLAYLVLYNNELFYIILPQIT------------NKLSGQIPSEIGLLTHLTVLHI 126
             S   L  L L+ N L   I  ++             N L+G+IPS +   T+L  + +
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497

Query: 127 SRNQLNGSIPQEVGQLTFLNHLIL 150
           S N+L G IP+ +G+L  L  L L
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKL 521

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 18/103 (17%)

Query: 63  INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQIT---------------NKL 107
           +N++S +L+             L  L L  N +    +                   NK+
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 108 SGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           SG +   +    +L  L +S N  +  IP  +G  + L HL +
Sbjct: 191 SGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDI 230

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)

Query: 63  INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQIT------------NKLSGQ 110
            N+TS    G      F +   + +L +  N L   I  +I             N +SG 
Sbjct: 613 CNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671

Query: 111 IPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           IP E+G L  L +L +S N+L+G IPQ +  LT L  + L
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.7 bits (135), Expect = 7e-10
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 16/86 (18%)

Query: 64  NLTSMSLNGTLL--EFP--FSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLT 119
           NL  +SL+   L  E P       +LA L L NN              SG IP+E+G   
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN------------SFSGNIPAELGDCR 538

Query: 120 HLTVLHISRNQLNGSIPQEVGQLTFL 145
            L  L ++ N  NG+IP  + + +  
Sbjct: 539 SLIWLDLNTNLFNGTIPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 63  INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQ 110
           + L    L G + +        L  L+L  N+L   I   +             N+L+G+
Sbjct: 447 LKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

Query: 111 IPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           IP  IG L +L +L +S N  +G+IP E+G    L  L L
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 13/91 (14%)

Query: 63  INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIG-LLTHL 121
           + L+S + +G L          L  L L  N            + SG++P  +  L   L
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFN------------EFSGELPESLTNLSASL 370

Query: 122 TVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
             L +S N  +G I   + Q        L L
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLN 146
           NKL G+IP  +  LT LT + +S N L+G IP+  GQ     
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFP 730

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 10/87 (11%)

Query: 79  FSSFPHLAYLVLYNN--------ELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRN- 129
                 L +L L  N         +F        N ++G+    I         H + N 
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593

Query: 130 -QLNGSIPQEVGQLTFLNHLILDLIFL 155
            +  G   +++ +L+  N   +     
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVY 620

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 13/156 (8%)

Query: 1   FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVN-VTKISPCAWS---GIHCNH 56
             L  ++  I++  AL +   +L   + S          N         W    G+  N 
Sbjct: 20  IKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS 79

Query: 57  AGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIG 116
            GRV G++L     +G + +        L  L L ++                  P  I 
Sbjct: 80  NGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSH--------GEKVNERLFGPKGIS 130

Query: 117 LLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
                      R     +      +  F + +   +
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 7/79 (8%), Positives = 20/79 (25%), Gaps = 7/79 (8%)

Query: 79  FSSFPHLAYLVLYNNELFYIILPQI-------TNKLSGQIPSEIGLLTHLTVLHISRNQL 131
                 L    + N+      + +          +       +   L  LT + +     
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261

Query: 132 NGSIPQEVGQLTFLNHLIL 150
              +P  +  L  +  + +
Sbjct: 262 LTKLPTFLKALPEMQLINV 280

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 12/92 (13%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 64  NLTSMSLNGTLLE-----FPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLL 118
            + ++S     L+     F   S   ++ +    NE+       +  K    +       
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI-----GSVDGKNFDPLDPTPFKG 432

Query: 119 THLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
            +++ +++S NQ++    +     + L+ + L
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINL 464

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 19/94 (20%)

Query: 63  INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLT 122
           I+L    L     +F  ++ P+L  + L  N                + P++    + L 
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-------------SKFPTQPLNSSTLK 539

Query: 123 VLHI------SRNQLNGSIPQEVGQLTFLNHLIL 150
              I        N+     P+ +     L  L +
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 16/103 (15%)

Query: 64  NLTSMSLNGTLLEFP--FSSFPHLAYLVLYNNELFYIILPQI-------------TNKLS 108
              S        +          +  + +  N L    +                 N+L 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 109 GQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           G++P   G    L  L+++ NQ+        G    + +L   
Sbjct: 344 GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 6/98 (6%), Positives = 27/98 (27%), Gaps = 22/98 (22%)

Query: 63  INLTSMSLNGTLLEFP--FSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTH 120
               +             + +   L  + +YN                 ++P+ +  L  
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC------------PNLTKLPTFLKALPE 274

Query: 121 LTVLHISRNQL--------NGSIPQEVGQLTFLNHLIL 150
           + +++++ N+         +     +      +  + +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 63  INLTSMSLNGTLLE-FP---FSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLL 118
           IN++S++L+   +  FP   FS+   L+ + L  N      L +I               
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-----LTEIPKNSLKDENENFKNT 487

Query: 119 THLTVLHISRNQLNGSIPQ-EVGQLTFLNHLIL 150
             LT + +  N+L           L +L  + L
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 12/85 (14%)

Query: 79  FSSFPHLAYLVLYNNELFYII-----LPQIT------NKLSGQIPSEIGLLTHLTVLHIS 127
                 L  L    N+L   +       ++       N+++    +  G    +  L  +
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385

Query: 128 RNQLNG-SIPQEVGQLTFLNHLILD 151
            N+L       +   ++ ++ +   
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFS 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 7/79 (8%)

Query: 79  FSSFPHLAYLVLYNNELFYIILPQIT-------NKLSGQIPSEIGLLTHLTVLHISRNQL 131
                 L  +   N+   Y  +            K           L  LT + +     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 132 NGSIPQEVGQLTFLNHLIL 150
              +P  +  L  L  L +
Sbjct: 504 MTQLPDFLYDLPELQSLNI 522

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 20/152 (13%), Positives = 48/152 (31%), Gaps = 15/152 (9%)

Query: 2   SLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVV 61
            L  S N ++    +     +  V+    + S   S   +          +         
Sbjct: 623 GLGFSHNKLKY---IPNIFNAKSVYV---MGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676

Query: 62  GINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHL 121
            + L+   +     E  F++   ++ ++L NN +       I                 L
Sbjct: 677 TVTLSYNEIQKFPTEL-FATGSPISTIILSNNLM-----TSIPENSLKPKDGNYKNTYLL 730

Query: 122 TVLHISRNQLNGSIPQE--VGQLTFLNHLILD 151
           T + +  N+L  S+  +     L +L+++ + 
Sbjct: 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 21/97 (21%)

Query: 64  NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTV 123
             +  +      E  +S+   L  + LYN                 Q+P  +  L  L  
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNC------------PNMTQLPDFLYDLPELQS 519

Query: 124 LHISRNQLNG---------SIPQEVGQLTFLNHLILD 151
           L+I+ N+             +  +      +    + 
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 8e-06
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 19/102 (18%)

Query: 63  INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI-----------------ILPQITN 105
           I+L    L     +F  ++ P+L+ + +  N                            N
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGN 792

Query: 106 KLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVG-QLTFLN 146
           ++  Q P+ I     L  L I  N +   + +++  QL  L+
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILD 833

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 23/162 (14%), Positives = 44/162 (27%), Gaps = 45/162 (27%)

Query: 2   SLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVT----KISPCAWS---GIHC 54
            L  ++  I++  AL     +L   +         ++++            W    G+  
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDL 319

Query: 55  NHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSE 114
           ++ GRV G++L                                           G++P  
Sbjct: 320 DNNGRVTGLSLAG-------------------------------------FGAKGRVPDA 342

Query: 115 IGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156
           IG LT L VL    +       +  G       +  +    I
Sbjct: 343 IGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERKHRI 383

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 64  NLTSMSL--NGTLLEFP--FSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLT 119
           +LT + L     + + P      P L  L +  N    I   Q+    + ++  +     
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG--ISAAQLKADWT-RLADDEDTGP 548

Query: 120 HLTVLHISRNQLNGSIPQEV--GQLTFLNHLIL 150
            + + ++  N L    P      ++  L  L  
Sbjct: 549 KIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 12/90 (13%)

Query: 73  TLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKLSGQIPSEIGLLTH 120
            L  + F SFP L  L L   E+  I       L  ++      N +          L+ 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 121 LTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           L  L      L       +G L  L  L +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNV 131

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 64  NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKLSGQI 111
           N+T   +     + P +       L L  N L ++        P++        ++    
Sbjct: 9   NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 112 PSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
                 L+HL+ L ++ N +          L+ L  L+  
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 17/105 (16%)

Query: 64  NLTSMSLNGTLLEFP----FSSFPHLAYLVLYNNELFYIILPQIT-------------NK 106
           NL  + ++ T         F+    L  L +  N      LP I               +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 107 LSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           L    P+    L+ L VL++S N            L  L  L   
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 12/92 (13%)

Query: 63  INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKLSGQ 110
           + +   S     L   F+   +L +L L   +L  +       L  +       N     
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 111 IPSEIGLLTHLTVLHISRNQLNGSIPQEVGQL 142
                  L  L VL  S N +  S  QE+   
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 64  NLTSMSLNGTLL----EFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLT 119
           +L  +    T L     FP      L  L + +N +            S ++P     LT
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-----------QSFKLPEYFSNLT 149

Query: 120 HLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
           +L  L +S N++      ++  L  +  L L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 18/106 (16%)

Query: 64  NLTSMSLNGTLLEFP------FSSFPHLAYLVLYNNELFYII-----LPQIT------NK 106
           +L  + L+   L F             L YL L  N +  +      L Q+       + 
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 107 LSGQIPSEI-GLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           L       +   L +L  L IS      +       L+ L  L + 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 22/163 (13%)

Query: 2   SLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVV 61
            L +S++         +   SL   + S LH   L+   ++KI   A+S +       + 
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSL---AHSPLHILNLTKNKISKIESDAFSWLG-----HLE 408

Query: 62  GINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKLSG 109
            ++L    +   L    +    ++  + L  N+   +       +P +         L  
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

Query: 110 --QIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
               PS    L +LT+L +S N +       +  L  L  L L
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDL 511

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 16/104 (15%)

Query: 64  NLTSMSLNG----TLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKL 107
           N+T ++L       L    F+ +  L  L +  N +  +       LP +       N+L
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85

Query: 108 SGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           S          T+LT LH+  N +         +   L  L L 
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 18/110 (16%)

Query: 64  NLTSMSLNGTLL----EFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKL 107
           NLT + L    +      PF    +L  L L +N L          L  +       NK+
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 108 SGQIPSEIGLL--THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL 155
                 E+ +   + L  L +S NQ+    P     +  L  L L+ + L
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 12/85 (14%)

Query: 79  FSSFPHLAYLVLYNNELFYII------LPQIT------NKLSGQIPSEIGLLTHLTVLHI 126
               P L  L L +NEL  +          +T      N +     +      +L  L +
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 127 SRNQLNGSIPQEVGQLTFLNHLILD 151
           S N L+ +      QL  L  L+L 
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLS 153

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 19/108 (17%)

Query: 64  NLTSMSLNGTLLEF----PFSSFPHLAYLVLYNNELFYIILPQIT--------------N 105
           NL ++ L+   L            +L  L+L NN++  +   ++               N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 106 KLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHL-ILDL 152
           ++    P     +  L  L ++  QL  S+ +++        +  L L
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 63  INLTSMSLNG-TLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHL 121
           ++      +   L + P     ++  L L +N            +L     +     + L
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHN------------QLRRLPAANFTRYSQL 51

Query: 122 TVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           T L +  N ++   P+   +L  L  L L 
Sbjct: 52  TSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 21/109 (19%)

Query: 64  NLTSMSLNG---TLLEFPFSSFPHLA-----YLVLYNNELFYII------LPQIT----- 104
           NL  +SL+    +L      +F  LA      L L  N++  I       L  +      
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413

Query: 105 -NKLSGQIP-SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
            N++  ++   E   L ++  +++S N+           +  L  L+L 
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 21/132 (15%)

Query: 36  LSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLE--FPFSSFPHLAYLVLYNN 93
           LSS  + + SP  +  I      R+ G+ L ++ L  +L E      +   +  L L N+
Sbjct: 178 LSSNQIKEFSPGCFHAIG-----RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 94  ELFYII--------LPQIT------NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEV 139
           +L               +T      N L+         L  L    +  N +       +
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 140 GQLTFLNHLILD 151
             L  + +L L 
Sbjct: 293 HGLFNVRYLNLK 304

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 7/92 (7%)

Query: 64  NLTSMSLNG----TLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLT 119
            L    L       L         ++ YL L  +   +         L          L 
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---FTKQSISLASLPKIDDFSFQWLK 329

Query: 120 HLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
            L  L++  N + G        L  L +L L 
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/111 (17%), Positives = 29/111 (26%), Gaps = 24/111 (21%)

Query: 64  NLTSMSLNG----TLLEFPFSSFPHLAYLVLYNNELFYI--------------ILPQIT- 104
           NLT + L+      + +        L  L L +N L  +               L  +  
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 105 -----NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
                N            L  L ++ +  N LN            L  L L
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 64  NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI--ILPQIT------NKLSGQIPSEI 115
            L  + + G  L       P L  L + +N+L  +  +  ++       N+L+  +P   
Sbjct: 122 GLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLP 180

Query: 116 GLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL 155
                L  L +S NQL  S+P    +L  L      L  L
Sbjct: 181 S---GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 64  NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI--ILPQIT------NKLSGQIPSEI 115
            L  + ++G  L         L  L++  N L  +  +   +       N+L+ ++P  +
Sbjct: 222 GLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESL 280

Query: 116 GLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI 153
             L+  T +++  N L+    Q + ++T        +I
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPII 318

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 18/93 (19%)

Query: 64  NLTSMSLNG-TLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLT 122
               +++    L   P     H+  LV+ +N L               +P+       L 
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNL-------------TSLPALPP---ELR 84

Query: 123 VLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL 155
            L +S NQL  S+P     L  L+     L  L
Sbjct: 85  TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL 116

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 64  NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI--ILPQIT------NKLSGQIPSEI 115
            L  +S++   L    +    L  L  YNN+L  +  +   +       N+L+  +P+  
Sbjct: 142 GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTLP 200

Query: 116 GLLTHLTVLHISRNQLNGSIPQEVGQLTFLN 146
             L  L   +   N+L  S+P     L  L 
Sbjct: 201 SELYKLWAYN---NRLT-SLPALPSGLKELI 227

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 16/90 (17%)

Query: 64  NLTSMSLNGTLL-EFP--FSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTH 120
           NL S+ L  T +   P   ++  +L  L + N+ L               +   I  L  
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-------------ALGPAIHHLPK 230

Query: 121 LTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
           L  L +       + P   G    L  LIL
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 14/88 (15%)

Query: 64  NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTV 123
             T  +L  T      ++ P    L L +  L              Q P +   L+HL  
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPL-------------PQFPDQAFRLSHLQH 108

Query: 124 LHISRNQLNGSIPQEVGQLTFLNHLILD 151
           + I    L   +P  + Q   L  L L 
Sbjct: 109 MTIDAAGLM-ELPDTMQQFAGLETLTLA 135

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           + L   +P +I  LT L  L +        +P  + QL     +++ 
Sbjct: 264 SNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 64  NLTSMSLNGTLL-EFP--FSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTH 120
            L +++L    L   P   +S   L  L +        +   + +        E   L +
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST---DASGEHQGLVN 184

Query: 121 LTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           L  L +    +  S+P  +  L  L  L + 
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 31/184 (16%)

Query: 3   LDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVG 62
           LD+S + IE          +L     S L S  LS      +   A+         ++  
Sbjct: 355 LDLSHDDIETSDCCNLQLRNL-----SHLQSLNLSYNEPLSLKTEAFKECP-----QLEL 404

Query: 63  INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKLSGQ 110
           ++L    L     + PF +   L  L L ++ L          LP +       N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 111 IPSEIGL---LTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD------LIFLIFWMVQ 161
              +      L  L +L +S   L+         L  +NH+ L               ++
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524

Query: 162 SLVL 165
            + L
Sbjct: 525 GIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 16/105 (15%)

Query: 64  NLTSMSLNG----TLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKL 107
            L ++ L       + E   S    L +L      +  I          +       N +
Sbjct: 82  RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 108 SGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
           S     +      L VL    N ++    +++  L    +L L+L
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/104 (12%), Positives = 29/104 (27%), Gaps = 15/104 (14%)

Query: 63  INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQIT--------------NKLS 108
           +++   +    L      +  +L  L L ++++       +               N+  
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 109 GQIPSEIGLLTHLTVLHISRNQLNGSIPQEV-GQLTFLNHLILD 151
                       L +L ++  +L     Q     L  L  L L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 18/111 (16%)

Query: 53  HCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT-- 104
                 +    N  ++ LN    E P +       L    N L  I       L  +T  
Sbjct: 9   IEKEVNKTY--NCENLGLN----EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFL 62

Query: 105 ----NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
                ++             L  L ++ N L       +     L HL   
Sbjct: 63  DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 30/149 (20%), Positives = 45/149 (30%), Gaps = 22/149 (14%)

Query: 2   SLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVV 61
           SL+           L+     LK  +   L       ++   ISP  + G+       V 
Sbjct: 206 SLNFGGTQN-----LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS---VE 257

Query: 62  GINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHL 121
            INL        +    F  F  L  L L    L              ++PS +  L+ L
Sbjct: 258 SINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-------------SELPSGLVGLSTL 303

Query: 122 TVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
             L +S N+              L HL +
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSI 332

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 15/100 (15%)

Query: 64  NLTSMSLNGTLLEF--PFSSFPHLAYLVLYNNELFYII----LPQIT------NKLSGQI 111
            LT++ +    +       +  +L  L L  + +  I     L ++       N      
Sbjct: 89  KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLS-D 147

Query: 112 PSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
            S +  +T L  L ++ +++    P  +  LT L  L L+
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 14/100 (14%)

Query: 64  NLTSMSLNGTLLE--FPFSSFPHLAYLVLYNNELFYII----LPQIT------NKLSGQI 111
            L S+ +    +    P ++   L +L +  N++  I     L ++       N++S   
Sbjct: 222 RLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD-- 279

Query: 112 PSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
            S +  L+ L  L ++ NQL     + +G LT L  L L 
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 79  FSSFPHLAYLVLYNNELFYI----ILPQIT------NKLSGQIPSEIGLLTHLTVLHISR 128
            +S   L +L L  N ++ +    +  ++       NKL+  +  E      +T + +  
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 129 NQLNGSIPQEVGQLTFLNHLILD 151
           N+L   I + +     L H  L 
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLR 245

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 16/103 (15%)

Query: 64  NLTSMSLNG----TLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKL 107
           +  ++ L+      L  + FS+F  L +L L   E+  I       L  ++      N +
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 108 SGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
               P     LT L  L     +L       +GQL  L  L +
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 12/90 (13%)

Query: 74  LLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKLSGQIPSEIGLLTHL 121
           L + P         + L  N L  +         ++        ++          L HL
Sbjct: 23  LSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82

Query: 122 TVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           + L ++ N +    P     LT L +L+  
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 21/124 (16%)

Query: 64  NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII------LPQIT------NKLSGQI 111
            +   S     L   F++  +L +L L   +L  I       L ++       N L    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 112 PSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL---------DLIFLIFWMVQS 162
            S    L  L+ L  S N++  S          L    L         +    + W+ + 
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQ 573

Query: 163 LVLL 166
              L
Sbjct: 574 KQFL 577

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 15/93 (16%)

Query: 64  NLTSMSLNGTLL----EFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLT 119
           +L ++    T L     FP      L  L + +N +              ++P+    LT
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC-----------KLPAYFSNLT 153

Query: 120 HLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
           +L  + +S N +      ++  L     + L L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 16/83 (19%)

Query: 64  NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTV 123
            L   + N  +           + L L    L               +P  +     +TV
Sbjct: 40  ALPGENRNEAVSLLKECLINQFSELQLNRLNL-------------SSLPDNLP--PQITV 84

Query: 124 LHISRNQLNGSIPQEVGQLTFLN 146
           L I++N L  S+P+    L +L+
Sbjct: 85  LEITQNAL-ISLPELPASLEYLD 106

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 16/111 (14%)

Query: 64  NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNEL---------------FYIILPQITNKLS 108
           +L  +S+    L F       L  L +  N L                 I      N+++
Sbjct: 161 SLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 109 GQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWM 159
             IP  I  L     + +  N L+  I + + Q T         I+     
Sbjct: 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 18/84 (21%)

Query: 64  NLTSMSLNGTLL-EFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLT 122
             + + LN   L   P +  P +  L +  N L               +P        L 
Sbjct: 60  QFSELQLNRLNLSSLPDNLPPQITVLEITQNAL-------------ISLPELPA---SLE 103

Query: 123 VLHISRNQLNGSIPQEVGQLTFLN 146
            L    N+L+ ++P+    L  L+
Sbjct: 104 YLDACDNRLS-TLPELPASLKHLD 126

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 64  NLTSMSLNGTLLEF--PFSSFPHLAYLVLYNNELFYII----LPQIT------NKLSGQI 111
           +LT ++L    +          ++  L + N           L  +         ++   
Sbjct: 45  SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDK 104

Query: 112 PSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
              +  LT LT+L IS +  + SI  ++  L  +N + L 
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 13/84 (15%)

Query: 79  FSSFPHLAYLVLYNNELFYI----ILPQIT------NKLSGQIPSEIGLLTHLTVLHISR 128
              +  L  L L   EL  +     LP +       N+L   +P     L  LTVL +S 
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSF 109

Query: 129 NQLNGSIPQEV-GQLTFLNHLILD 151
           N+L  S+P      L  L  L L 
Sbjct: 110 NRLT-SLPLGALRGLGELQELYLK 132

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 13/102 (12%)

Query: 64  NLTSMSLNGTLLEF--PFSSFPHLAYLVLYNNELFYII--LPQIT------NKLSGQIPS 113
           +L  ++     LE      + P L  +   NN L  +      +       N L      
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE--ELP 231

Query: 114 EIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL 155
           E+  L  LT ++   N L  ++P     L  LN     L  L
Sbjct: 232 ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDL 272

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 64  NLTSMSLNGTLLEFP--FSSFPHLAYLVLYNNELFYII------LPQIT------NKLSG 109
            LT + L    L       ++P L  + L  NEL  I+      + ++       N+L  
Sbjct: 227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV- 285

Query: 110 QIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
            +      +  L VL +S N L   + +   Q   L +L LD
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 326

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 16/102 (15%)

Query: 64  NLTSMSLNGTLLEFP--FSSFPHLAYLVLYNNELFYII------LPQIT------NKLSG 109
            LT + L    L       ++P L  + L  NEL  I+      + ++       N+L  
Sbjct: 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV- 291

Query: 110 QIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
            +      +  L VL +S N L   + +   Q   L +L LD
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLD 332

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 14/91 (15%)

Query: 62  GINLTSMSLNGTLL-EFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTH 120
           G ++ ++      +     S       + L NN            K++     + G  + 
Sbjct: 98  GPSIETLHAANNNISRVSCSRGQGKKNIYLANN------------KITMLRDLDEGCRSR 145

Query: 121 LTVLHISRNQLNG-SIPQEVGQLTFLNHLIL 150
           +  L +  N+++  +  +       L HL L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 16/100 (16%)

Query: 64  NLTSMSLNGTLLE--FPFSSFPHLAYLVLYNNELFYII----LPQIT------NKLSGQI 111
           NLT ++ +   L    P  +   L  +++ NN++  I     L  +T      N+++   
Sbjct: 69  NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 128

Query: 112 PSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           P  +  LT+L  L +S N ++      +  LT L  L   
Sbjct: 129 P--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.6
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.57
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.55
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.52
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.51
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.51
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.47
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.46
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.46
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.46
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.45
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.45
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.44
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.42
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.42
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.41
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.41
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.4
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.38
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.38
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.36
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.36
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.33
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.32
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.31
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.27
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.24
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.21
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.2
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.2
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.03
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.03
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.02
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.02
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.93
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.93
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.93
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.91
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.87
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.87
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.81
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.74
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.55
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.21
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.74
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.59
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.43
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.81
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.35
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.62
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.83
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.21
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.15
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.54
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	89.35

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=2e-25  Score=174.06  Aligned_cols=154  Identities=25%  Similarity=0.414  Sum_probs=132.1

Q ss_pred             CCChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCccce--ecCCCCC
Q 047948            7 SNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCA--WSGIHCNHA---GRVVGINLTSMSLNG--TLLEFPF   79 (171)
Q Consensus         7 ~~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c~--w~gv~c~~~---~~v~~L~l~~~~l~~--~~p~~~l   79 (171)
                      .|.+.|++||++||+.+.+ +. .+.+|.      .+.+||.  |.||+|+..   ++|+.|+++++.+.+  .+|. .+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~-~~-~l~~W~------~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l   72 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGN-PT-TLSSWL------PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SL   72 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTC-CG-GGTTCC------TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GG
T ss_pred             CCCHHHHHHHHHHHHhcCC-cc-cccCCC------CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hH
Confidence            5788999999999999965 44 688997      5678998  999999864   799999999999998  8898 99


Q ss_pred             CCCCCCcEEEeec-Ccccccccccc------------cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccC
Q 047948           80 SSFPHLAYLVLYN-NELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLN  146 (171)
Q Consensus        80 ~~L~~L~~L~l~~-n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~  146 (171)
                      ..++.|++|++++ |.+.+.+|..+            .|++++.+|..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  152 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence            9999999999995 99999998876            6888888898899999999999999999988999999999999


Q ss_pred             ceeccccccccccch-------hhhccccc
Q 047948          147 HLILDLIFLIFWMVQ-------SLVLLAIW  169 (171)
Q Consensus       147 ~L~Ls~N~l~~~~~~-------~L~~L~l~  169 (171)
                      +|++++|++++.++.       .|++|++.
T Consensus       153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~  182 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred             eEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence            999999988743332       56666653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=6.3e-24  Score=179.75  Aligned_cols=82  Identities=22%  Similarity=0.331  Sum_probs=70.2

Q ss_pred             CCChHHHHHHHHHHHhcccCCCCCC-------CCCCCccCCCCCCCCCcc---cceeeCCCCCEEEEEcCCCccceecCC
Q 047948            7 SNSIEEGHALVKWKASLKVHSRSLL-------HSWFLSSVNVTKISPCAW---SGIHCNHAGRVVGINLTSMSLNGTLLE   76 (171)
Q Consensus         7 ~~~~~~~~~l~~~~~~l~~~~~~~~-------~~W~~~~~~~~~~~~c~w---~gv~c~~~~~v~~L~l~~~~l~~~~p~   76 (171)
                      +....|+.||.+++.++.++.+...       .+|+      .+.++|.|   .||+|+..++|+.|+|+++++.|.+|+
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~------~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~   99 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN------FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD   99 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC------CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC------CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh
Confidence            3444699999999999977444322       3787      56899999   999999889999999999999999999


Q ss_pred             CCCCCCCCCcEEEeecCcc
Q 047948           77 FPFSSFPHLAYLVLYNNEL   95 (171)
Q Consensus        77 ~~l~~L~~L~~L~l~~n~l   95 (171)
                       ++..|++|+.|++++|.+
T Consensus       100 -~l~~L~~L~~L~Ls~N~~  117 (636)
T 4eco_A          100 -AIGQLTELEVLALGSHGE  117 (636)
T ss_dssp             -GGGGCTTCCEEESCCGGG
T ss_pred             -HHhcCccceEEECcCCcc
Confidence             999999999999999954

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=1.1e-23  Score=181.60  Aligned_cols=159  Identities=25%  Similarity=0.299  Sum_probs=122.7

Q ss_pred             CccccCCCChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCCcccceeeCCCCCEEEEEcCCCcccee---cC--
Q 047948            1 FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGT---LL--   75 (171)
Q Consensus         1 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c~w~gv~c~~~~~v~~L~l~~~~l~~~---~p--   75 (171)
                      |+.+++++.+.|+.||++||+.+.+ |. .+++|.      .+.+||.|.||+|+ .++|+.|+|+++.+.|.   ++  
T Consensus         2 ~~~~~~~~~~~~~~all~~k~~~~~-~~-~l~~W~------~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~   72 (768)
T 3rgz_A            2 FQASPSQSLYREIHQLISFKDVLPD-KN-LLPDWS------SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSS   72 (768)
T ss_dssp             ------CCHHHHHHHHHHHHTTCSC-TT-SSTTCC------TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHH
T ss_pred             CcCccccCCHHHHHHHHHHHhhCCC-cc-cccCCC------CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChh
Confidence            4566677778899999999999985 66 789997      56799999999998 68999999999998876   43  


Q ss_pred             ---------------------CCCCCCCCCCcEEEeecCcccccccc--cc------------cccccccCCccc-cCCc
Q 047948           76 ---------------------EFPFSSFPHLAYLVLYNNELFYIILP--QI------------TNKLSGQIPSEI-GLLT  119 (171)
Q Consensus        76 ---------------------~~~l~~L~~L~~L~l~~n~l~g~~p~--~~------------~n~l~g~~p~~~-~~l~  119 (171)
                                           . .+..+++|++|++++|.+.|.+|.  .+            +|.+.+.+|..+ ..++
T Consensus        73 l~~L~~L~~l~~~~~~~~~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~  151 (768)
T 3rgz_A           73 LLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN  151 (768)
T ss_dssp             TTTCTTCCEEECTTSCEEECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred             HhccCcccccCCcCCCcCCCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence                                 4 678888999999999999888877  44            678888877765 7888


Q ss_pred             CCCEEecccCcccccCChh---hhCccccCceeccccccc----cccchhhhccccc
Q 047948          120 HLTVLHISRNQLNGSIPQE---VGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW  169 (171)
Q Consensus       120 ~L~~L~ls~N~l~g~~P~~---~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~  169 (171)
                      +|++|++++|++++..|..   +.++++|++|++++|.++    ...+++|++|++.
T Consensus       152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls  208 (768)
T 3rgz_A          152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS  208 (768)
T ss_dssp             TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECc
Confidence            8888888888888777766   667777777777777766    2344566666653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=1.8e-22  Score=175.94  Aligned_cols=86  Identities=20%  Similarity=0.327  Sum_probs=69.7

Q ss_pred             cCCCChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCC--Ccc------------cceeeCCCCCEEEEEcCCCcc
Q 047948            5 VSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISP--CAW------------SGIHCNHAGRVVGINLTSMSL   70 (171)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~--c~w------------~gv~c~~~~~v~~L~l~~~~l   70 (171)
                      .++....|+.||++||+++.+ +     +|...... ...+|  |.|            .||+|+..++|+.|+|+++++
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~-~-----~W~~~~~~-~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L  335 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDG-K-----NWRYYSGT-INNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGA  335 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTG-G-----GCCCCCSS-CSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCC
T ss_pred             ccccchHHHHHHHHHHHHcCC-C-----CCCcCCCc-ccccCCccccccccccccccCcCceEecCCCCEEEEECccCCC
Confidence            344456799999999999976 2     78621000 01355  999            999999888999999999999


Q ss_pred             ceecCCCCCCCCCCCcEEEe-ecCccccc
Q 047948           71 NGTLLEFPFSSFPHLAYLVL-YNNELFYI   98 (171)
Q Consensus        71 ~~~~p~~~l~~L~~L~~L~l-~~n~l~g~   98 (171)
                      .|.+|+ ++..|+.|+.|++ ++|.+.|.
T Consensus       336 ~G~ip~-~l~~L~~L~~LdLss~N~lsG~  363 (876)
T 4ecn_A          336 KGRVPD-AIGQLTELKVLSFGTHSETVSG  363 (876)
T ss_dssp             EEEECG-GGGGCTTCCEEESCCTTHHHHT
T ss_pred             CCcCch-HHhccccceEeeeccccccccc
Confidence            999999 9999999999999 88888776

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.80  E-value=1.9e-20  Score=146.86  Aligned_cols=146  Identities=18%  Similarity=0.218  Sum_probs=94.1

Q ss_pred             cCCCChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCCcccceeeCC---------CCCEEEEEcCCCccceecC
Q 047948            5 VSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNH---------AGRVVGINLTSMSLNGTLL   75 (171)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c~w~gv~c~~---------~~~v~~L~l~~~~l~~~~p   75 (171)
                      ..+....|+.||++||..+..++.+....|...  .....++|.|.|+.|..         ..+|+.|++++|.++ .+|
T Consensus        21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~--~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp   97 (328)
T 4fcg_A           21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA--NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP   97 (328)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHH--TTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred             ccccCchHHHHHHHHHHhccCCchhhhhhhccc--ccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence            445566799999999998865565666778310  01467899999999942         247888888888877 666


Q ss_pred             CCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecccCcccccCChhhhC--
Q 047948           76 EFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQ--  141 (171)
Q Consensus        76 ~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~--  141 (171)
                      . .+..++.|++|++++|.+. .+|..+            +|.+. .+|..++.+++|++|++++|++.+.+|..++.  
T Consensus        98 ~-~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~  174 (328)
T 4fcg_A           98 D-QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD  174 (328)
T ss_dssp             S-CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred             h-hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence            6 6777777777777777777 566544            45555 45555555556666666555555555554432  


Q ss_pred             -------ccccCceeccccccc
Q 047948          142 -------LTFLNHLILDLIFLI  156 (171)
Q Consensus       142 -------l~~L~~L~Ls~N~l~  156 (171)
                             +++|++|++++|+++
T Consensus       175 ~~~~~~~l~~L~~L~L~~n~l~  196 (328)
T 4fcg_A          175 ASGEHQGLVNLQSLRLEWTGIR  196 (328)
T ss_dssp             -CCCEEESTTCCEEEEEEECCC
T ss_pred             chhhhccCCCCCEEECcCCCcC
Confidence                   445555555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=2.5e-17  Score=122.91  Aligned_cols=126  Identities=25%  Similarity=0.289  Sum_probs=106.1

Q ss_pred             CCCCCCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc--------
Q 047948           42 TKISPCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI--------  103 (171)
Q Consensus        42 ~~~~~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~--------  103 (171)
                      .+...|.|.+|.|...+          +++.|+|++|.+++..+. .|..++.|+.|++++|.+....+..+        
T Consensus        14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~   92 (229)
T 3e6j_A           14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV   92 (229)
T ss_dssp             CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence            46789999999997532          689999999999987777 89999999999999999975544433        


Q ss_pred             ----cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          104 ----TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       104 ----~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                          +|++++..+..+..+++|+.|++++|+++ .+|..+..+++|++|+|++|+++      +..+++|+.|++.
T Consensus        93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A           93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence                78888766667889999999999999999 89999999999999999999988      3445677777774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.66  E-value=4e-16  Score=115.69  Aligned_cols=123  Identities=21%  Similarity=0.220  Sum_probs=100.2

Q ss_pred             CCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948           46 PCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------  103 (171)
Q Consensus        46 ~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------  103 (171)
                      .|.|..|.|...+          .++.|++++|.+++..+. .|..++.|+.|++++|.+++..|..+            
T Consensus        10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            4578888886432          689999999999966665 78999999999999999998777666            


Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      +|+++...+..+..+++|+.|++++|++++..|..|..+++|++|+|++|+++      +..+++|+.|++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence            68887555555788999999999999999888888999999999999999987      3345677777774

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=4.4e-16  Score=114.05  Aligned_cols=124  Identities=25%  Similarity=0.243  Sum_probs=94.4

Q ss_pred             CCCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------
Q 047948           45 SPCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-----------  103 (171)
Q Consensus        45 ~~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-----------  103 (171)
                      -.|.|.+|.|...+          ++++|++++|.+++..+. .+..++.|++|++++|++++..+..+           
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            34789999997532          689999999999855444 67889999999999999886554333           


Q ss_pred             -cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          104 -TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       104 -~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                       .|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++      +..+++|+.|++.
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence             67777655556788888899999888888655556788888888888888887      2345677777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.64  E-value=6.4e-16  Score=114.61  Aligned_cols=124  Identities=18%  Similarity=0.165  Sum_probs=89.8

Q ss_pred             CCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948           46 PCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------  103 (171)
Q Consensus        46 ~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------  103 (171)
                      .|.|..+.|....          .++.|++++|.+++..+...|..++.|+.|++++|.+++..+..+            
T Consensus        10 ~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           10 RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3567777775321          567888888888866554246788888888888888887665444            


Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      +|++++..|..+..+++|++|++++|++++..|..|..+++|++|+|++|+++      +..+++|+.|++.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence            67777766667788888888888888888777777888888888888888877      2335566666663

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=1.2e-15  Score=115.01  Aligned_cols=109  Identities=26%  Similarity=0.236  Sum_probs=56.1

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+++..+. .|..++.|+.|++++|.+++..+..+            +|++++..+..+..+++|++|++
T Consensus        60 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  138 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAG-VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL  138 (251)
T ss_dssp             TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCEEECCCCcCCccCHh-HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence            344555555554443333 44455555555555555543333222            45555444444555666666666


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI  168 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l  168 (171)
                      ++|++++..|..+..+++|++|+|++|+++      +..+++|+.|++
T Consensus       139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  186 (251)
T 3m19_A          139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL  186 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            666666444445666666666666666665      222345555555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.60  E-value=2.1e-15  Score=114.80  Aligned_cols=97  Identities=27%  Similarity=0.255  Sum_probs=55.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      .++.|++++|.+++..+. .|..++.|++|++++|.++...+..+            .|++.+..+..+..+++|++|++
T Consensus        38 ~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            467777777777654444 67777777777777777764333222            45555443344455555555555


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|++++..|..|..+++|++|++++|+++
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            555555444444555555555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.60  E-value=2.2e-15  Score=109.39  Aligned_cols=111  Identities=23%  Similarity=0.249  Sum_probs=91.4

Q ss_pred             CCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948           46 PCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------  103 (171)
Q Consensus        46 ~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------  103 (171)
                      .|.|..+.|...+          +++.|++++|.+++..+...+..++.|++|++++|.+++..|..+            
T Consensus         7 ~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A            7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             EECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            3678778776422          789999999999855543137889999999999999998877665            


Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            78888877777888899999999999999888888888899999999999887

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.57  E-value=3.2e-15  Score=128.83  Aligned_cols=57  Identities=44%  Similarity=0.521  Sum_probs=35.8

Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMV  160 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~  160 (171)
                      +|+++|.+|..++.++.|+.|++++|+++|.+|..++++++|++|+|++|++++.++
T Consensus       641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred             CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence            455556666666666666666666666666666666666666666666666664443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.55  E-value=1.8e-14  Score=102.98  Aligned_cols=111  Identities=24%  Similarity=0.251  Sum_probs=84.1

Q ss_pred             CCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948           46 PCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------  103 (171)
Q Consensus        46 ~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------  103 (171)
                      .|.|.++.|...+          +++.|++++|.+++..+. .+..++.|++|++++|.+++..+..+            
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4679999986432          789999999999865555 68899999999999999986554433            


Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIF  157 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~  157 (171)
                      +|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            677776655566778888888888888884444445677888888888888763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.53  E-value=1.5e-14  Score=116.90  Aligned_cols=125  Identities=20%  Similarity=0.228  Sum_probs=94.6

Q ss_pred             CCCCcccc--eeeCCC---------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccc-cc--------
Q 047948           44 ISPCAWSG--IHCNHA---------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILP-QI--------  103 (171)
Q Consensus        44 ~~~c~w~g--v~c~~~---------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~-~~--------  103 (171)
                      ...|.|.+  |.|...         .++++|++++|.+++..|. .|..++.|++|++++|.+.+.++. .+        
T Consensus         5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~   83 (455)
T 3v47_A            5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII   83 (455)
T ss_dssp             --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred             cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCE
Confidence            44566655  777643         3689999999999877777 899999999999999988766643 23        


Q ss_pred             ----cccccccCCccccCCcCCCEEecccCcccccCChh--hhCccccCceecccccccc-------ccchhhhccccc
Q 047948          104 ----TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE--VGQLTFLNHLILDLIFLIF-------WMVQSLVLLAIW  169 (171)
Q Consensus       104 ----~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~--~~~l~~L~~L~Ls~N~l~~-------~~~~~L~~L~l~  169 (171)
                          +|++.+..|..++.+++|++|++++|++++.+|..  +.++++|++|++++|+++.       ..+++|++|++.
T Consensus        84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A           84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence                67788777888888888888888888888766655  7888888888888888772       235667777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.53  E-value=6.6e-15  Score=114.44  Aligned_cols=98  Identities=20%  Similarity=0.331  Sum_probs=76.5

Q ss_pred             CEEEEEcCC-CccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           59 RVVGINLTS-MSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        59 ~v~~L~l~~-~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      ++++|++++ |.+.+.+|. .+..++.|++|++++|.+++.+|..+            +|.+.+.+|..+..+++|++|+
T Consensus        77 ~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           77 YLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            678888884 888877877 78888888888888888887777665            6777777777777778888888


Q ss_pred             cccCcccccCChhhhCcc-ccCceecccccccc
Q 047948          126 ISRNQLNGSIPQEVGQLT-FLNHLILDLIFLIF  157 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~-~L~~L~Ls~N~l~~  157 (171)
                      +++|+++|.+|..++.++ .|++|++++|++++
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~  188 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence            888888777777777776 77777777777763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=2.4e-14  Score=104.11  Aligned_cols=109  Identities=20%  Similarity=0.283  Sum_probs=71.9

Q ss_pred             CCcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948           46 PCAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------  103 (171)
Q Consensus        46 ~c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------  103 (171)
                      .|.+..+.|...          ..++.|++++|.++ .+|. .|..++.|+.|++++|.+++..+..+            
T Consensus         9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A            9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            355666777532          26899999999998 7776 89999999999999999986544333            


Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +|++++..|..|..+++|+.|++++|++++..+..|..+++|++|++++|++.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            45555544455555566666666666665333334555555666666666554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.52  E-value=1.3e-14  Score=119.96  Aligned_cols=121  Identities=22%  Similarity=0.245  Sum_probs=89.4

Q ss_pred             CCcccceeeCCC------------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc----------
Q 047948           46 PCAWSGIHCNHA------------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI----------  103 (171)
Q Consensus        46 ~c~w~gv~c~~~------------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~----------  103 (171)
                      .|.|.|+ |+..            .++++|++++|.+++..|. .|..++.|++|++++|++.+..|..+          
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            4788887 7532            2689999999999877777 89999999999999999987766555          


Q ss_pred             --cccccccCCccccCCcCCCEEecccCcccc-cCChhhhCccccCceeccccccc-------cccchhhhcccc
Q 047948          104 --TNKLSGQIPSEIGLLTHLTVLHISRNQLNG-SIPQEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAI  168 (171)
Q Consensus       104 --~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l  168 (171)
                        +|++.+..|..++.+++|++|++++|.+++ ..|..++++++|++|++++|++.       +..+++|++|++
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L  155 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI  155 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence              677776666667788888888888888775 35666777777777777777632       233455666655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.51  E-value=3.2e-14  Score=118.65  Aligned_cols=110  Identities=21%  Similarity=0.151  Sum_probs=91.3

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      .+++|+|++|.+++..+. .|..+++|++|++++|++++..|..|            +|++++..+..|..+++|++|++
T Consensus        53 ~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             CCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            689999999999965555 89999999999999999997766655            68888766677899999999999


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc-------cccchhhhccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAIW  169 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~  169 (171)
                      ++|++++..+..|+++++|++|++++|.++       ...+++|++|++.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence            999999655567899999999999999886       2345677777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.51  E-value=5.2e-14  Score=105.94  Aligned_cols=110  Identities=25%  Similarity=0.211  Sum_probs=68.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      .++.|++++|.+.+..+. .|..++.|++|++++|.+.+..+..+            +|++++..+..+..+++|++|++
T Consensus        36 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            466677777776655555 56667777777777777666555433            56666555555666677777777


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      ++|++++..+..+..+++|++|+|++|+++      +..+++|+.|++.
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence            777777444444566677777777777665      2234556666653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.49  E-value=7.1e-14  Score=110.61  Aligned_cols=123  Identities=20%  Similarity=0.170  Sum_probs=91.0

Q ss_pred             CCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCC-CCCCCcEEEeecCcccccccccc-----------
Q 047948           46 PCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFS-SFPHLAYLVLYNNELFYIILPQI-----------  103 (171)
Q Consensus        46 ~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~-~L~~L~~L~l~~n~l~g~~p~~~-----------  103 (171)
                      .|.+..+.|...+          .++.|+|++|.+++..+. .+. .+++|+.|++++|.+++..+..+           
T Consensus        17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             EEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            3467777775421          577889999988865555 666 88888888888888887665544           


Q ss_pred             -cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccccccc---------ccchhhhccccc
Q 047948          104 -TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIF---------WMVQSLVLLAIW  169 (171)
Q Consensus       104 -~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~---------~~~~~L~~L~l~  169 (171)
                       +|++.+..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|+|+.         ..+++|+.|++.
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence             677777666677888888888888888887777788888888888888888771         236677777764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=7.4e-14  Score=99.55  Aligned_cols=98  Identities=22%  Similarity=0.195  Sum_probs=81.4

Q ss_pred             CCcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccc
Q 047948           46 PCAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEI  115 (171)
Q Consensus        46 ~c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~  115 (171)
                      .|.|+.+.|...          ..++.|+|++|.+++..+. .|..++.|++|++++|++++            ..+..|
T Consensus         8 ~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~------------l~~~~f   74 (170)
T 3g39_A            8 SCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLTV------------LPAGVF   74 (170)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCC------------CCTTTT
T ss_pred             CcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCcCc------------cChhhc
Confidence            356777777542          2688999999999977777 89999999999999998873            223456


Q ss_pred             cCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          116 GLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       116 ~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ..+++|++|++++|++++..|..|..+++|++|+|++|++.
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            89999999999999999666667999999999999999987

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.48  E-value=9.2e-14  Score=116.16  Aligned_cols=97  Identities=25%  Similarity=0.205  Sum_probs=63.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+++..+. .|..++.|++|++++|.+++..|..+            +|.+.+..|..|+.+++|++|++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            577777777777765555 67777777777777777776655544            56666655666666666666666


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|.+++..|..++++++|++|++++|.+.
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  141 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIH  141 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCccc
Confidence            666666444455666666666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=102.09  Aligned_cols=98  Identities=16%  Similarity=0.134  Sum_probs=89.6

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|++++|.+++..+. .|..++.|+.|++++|.+++..+..+            +|++.+..|..+..+++|++|+
T Consensus        57 ~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEG-AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCEEECCCCcCCEECHH-HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            4799999999999977666 89999999999999999998777655            7999988899999999999999


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +++|++++..|..|..+++|++|++++|++.
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            9999999888999999999999999999997

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.47  E-value=2.1e-13  Score=104.18  Aligned_cols=109  Identities=23%  Similarity=0.146  Sum_probs=59.2

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCc-ccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNE-LFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~-l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      +++.|++++|.+++..+. .+..++.|++|++++|. +....|..+            +|.+.+..|..+..+++|++|+
T Consensus        57 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           57 NLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            455555555555544444 55555556666666554 433323322            4555555555556666666666


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI  168 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l  168 (171)
                      +++|++++..+..+..+++|++|++++|+++      +..+++|+.|++
T Consensus       136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence            6666666444444556666666666666655      223445555555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.46  E-value=1.3e-13  Score=111.50  Aligned_cols=110  Identities=27%  Similarity=0.193  Sum_probs=76.6

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      .++.+++++|.+.+..+. .+..++.|+.|++++|.+.+..|..+            +|++.+..|..+..+++|++|++
T Consensus       276 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             CCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             CceEEEecCccccccchh-hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            567777777777766666 67777777777777777776655444            56666666666777777777777


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      ++|++++..|..+..+++|++|++++|+++      +..+++|++|++.
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  403 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  403 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence            777777666777777777777777777776      2345566666664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.46  E-value=7.4e-14  Score=109.83  Aligned_cols=124  Identities=23%  Similarity=0.216  Sum_probs=87.5

Q ss_pred             CCCCCCcccceeeCCC------------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------
Q 047948           42 TKISPCAWSGIHCNHA------------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------  103 (171)
Q Consensus        42 ~~~~~c~w~gv~c~~~------------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------  103 (171)
                      .....|.|.|+ |+..            .++++|++++|.+++..+. .+..++.|+.|++++|.+++..|..+      
T Consensus        25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence            45677899988 6532            2789999999999865555 78999999999999999987666544      


Q ss_pred             ------cccccccCCccccCCcCCCEEecccCcccccCCh--hhhCccccCceeccccc-cc------cccchhhhcccc
Q 047948          104 ------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ--EVGQLTFLNHLILDLIF-LI------FWMVQSLVLLAI  168 (171)
Q Consensus       104 ------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~--~~~~l~~L~~L~Ls~N~-l~------~~~~~~L~~L~l  168 (171)
                            +|++++..+..+..+++|++|++++|+++ .+|.  .+.++++|++|++++|+ +.      +..+++|++|++
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence                  56666543344677778888888888777 4554  56777777777777773 43      233455666655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.46  E-value=2e-13  Score=103.97  Aligned_cols=97  Identities=28%  Similarity=0.192  Sum_probs=56.3

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+++..+. .+..++.|++|++++|.+++..+..+            .|++++..+..+..+++|+.|++
T Consensus        86 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           86 NLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccCccChh-HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            566666666666644433 45666666666666666665444332            45555444444556666666666


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|++++..|..+..+++|++|++++|+++
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            666666444444556666666666666655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.45  E-value=4.4e-13  Score=101.91  Aligned_cols=97  Identities=23%  Similarity=0.305  Sum_probs=63.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+++..+. .+..++.|++|++++|.+.+..+..+            .|.+.+..+..+..+++|++|++
T Consensus        53 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             CCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            566666666666644444 56666666666666666665544433            45555554445677777777777


Q ss_pred             ccCcccc-cCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNG-SIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|++++ .+|..+.++++|++|++++|+++
T Consensus       132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            7777765 35777777777777777777776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.45  E-value=3e-13  Score=98.06  Aligned_cols=106  Identities=23%  Similarity=0.213  Sum_probs=90.2

Q ss_pred             EEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc-c------------cccccccCCccccCCcCCCEEecc
Q 047948           61 VGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ-I------------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        61 ~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~-~------------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      +.+++++++++ .+|. .+..  .|+.|++++|.+.+..+.. +            +|++++..|..|..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~-~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPR-DIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCS-CCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCcc-CCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            67999999996 7777 5544  8999999999998776642 3            799999889999999999999999


Q ss_pred             cCcccccCChhhhCccccCceeccccccc------cccchhhhcccccc
Q 047948          128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIWP  170 (171)
Q Consensus       128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~~  170 (171)
                      +|++++..|..|.++++|++|+|++|+++      +..+++|+.|++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            99999888888999999999999999998      34566788888743

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.44  E-value=3.6e-13  Score=109.71  Aligned_cols=109  Identities=25%  Similarity=0.191  Sum_probs=72.7

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++.|+|++|.+++..+. .|..++.|++|++++|.+.+..|..+            .|++....+..+..+++|++|++
T Consensus        33 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            577788888887766565 77777788888888777776666554            45555444445666777777777


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI  168 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l  168 (171)
                      ++|++++..|..|.++++|++|++++|.+.      +..+++|+.|++
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  159 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL  159 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence            777777666666666777777777776665      233445555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.43  E-value=1.9e-13  Score=106.88  Aligned_cols=100  Identities=18%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++.|++++|.++ .+|. .+..++.|+.|++++|.+.+ +|..+            +|.+.+.+|..++.+++|+.|++
T Consensus       184 ~L~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          184 NLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             TCCEEEEEEECCC-CCCG-GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCEEECcCCCcC-cchH-hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            4555555555555 4555 55666666666666666664 33223            55666677777777777777777


Q ss_pred             ccCcccccCChhhhCccccCceeccccccccccch
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQ  161 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~  161 (171)
                      ++|++.+.+|..+.++++|++|+|++|++.+.++.
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence            77777777777777777777777777766644444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=8.1e-14  Score=119.65  Aligned_cols=89  Identities=29%  Similarity=0.332  Sum_probs=50.1

Q ss_pred             CCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecccCcccccCChhhhCcccc
Q 047948           78 PFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL  145 (171)
Q Consensus        78 ~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L  145 (171)
                      .+..+..|+.|+|++|.+. .+|..+            +|.++ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            4555666666666666655 333332            45555 55666666666666666666666 566666666666


Q ss_pred             Cceeccccccc-----cccchhhhccccc
Q 047948          146 NHLILDLIFLI-----FWMVQSLVLLAIW  169 (171)
Q Consensus       146 ~~L~Ls~N~l~-----~~~~~~L~~L~l~  169 (171)
                      ++|+|++|.|+     +..+++|+.|+|.
T Consensus       296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             SEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred             CEEECCCCCCCccChhhhcCCCccEEeCC
Confidence            66666666654     2334455555553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.42  E-value=4e-13  Score=102.63  Aligned_cols=109  Identities=22%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+.+..+. .+..++.|++|++++|.+.+..+..+            +|++++..+..+..+++|+.|++
T Consensus       106 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence            445555555555543333 45555555555555555554333222            44555444444555666666666


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI  168 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l  168 (171)
                      ++|.+++..|..+.++++|++|++++|+++      ...+++|+.|++
T Consensus       185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL  232 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred             CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence            666666555666666666666666666665      222345555555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.42  E-value=1.8e-13  Score=96.85  Aligned_cols=94  Identities=24%  Similarity=0.277  Sum_probs=60.1

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC--
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP--  136 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P--  136 (171)
                      +++.|++++|.+++.  . .+..++.|++|++++|.+.            +.+|..+..+++|++|++++|.+++ +|  
T Consensus        50 ~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~  113 (168)
T 2ell_A           50 NLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIF------------GGLDMLAEKLPNLTHLNLSGNKLKD-ISTL  113 (168)
T ss_dssp             GCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCC------------SCCCHHHHHCTTCCEEECBSSSCCS-SGGG
T ss_pred             CCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCc------------hHHHHHHhhCCCCCEEeccCCccCc-chhH
Confidence            455555555555433  2 4555555555555555554            4455666668888888888888884 33  


Q ss_pred             hhhhCccccCceecccccccc---------ccchhhhcccc
Q 047948          137 QEVGQLTFLNHLILDLIFLIF---------WMVQSLVLLAI  168 (171)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~---------~~~~~L~~L~l  168 (171)
                      ..+..+++|++|++++|+++.         ..+++|+.|++
T Consensus       114 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A          114 EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred             HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence            677788888888888888772         22456666666

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=5e-13  Score=112.16  Aligned_cols=109  Identities=21%  Similarity=0.158  Sum_probs=79.3

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++.|++++|.+.+..+. .|..++.|+.|++++|.+.+..|..+            +|.+.+..+..|+.+++|++|++
T Consensus        76 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            467777888887766665 78888888888888888887666554            67777544444678888888888


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc---cccchhhhcccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI---FWMVQSLVLLAI  168 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~---~~~~~~L~~L~l  168 (171)
                      ++|.+++..|..|..+++|++|++++|.++   ...+++|+.|++
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l  199 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV  199 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEEC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhc
Confidence            888888777777888888888888888877   233444444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.42  E-value=3.3e-13  Score=117.34  Aligned_cols=108  Identities=17%  Similarity=0.112  Sum_probs=69.6

Q ss_pred             CcccceeeCCCCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccc-cccc------------cccccccCCc
Q 047948           47 CAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII-LPQI------------TNKLSGQIPS  113 (171)
Q Consensus        47 c~w~gv~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~-p~~~------------~n~l~g~~p~  113 (171)
                      |.|..|.+ -..+++.|+|++|.+++..+. .|..++.|++|++++|...+.+ |..+            +|.+.+..|.
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            34555555 334677777777777766666 6777777777777777555554 3333            5666666666


Q ss_pred             cccCCcCCCEEecccCcccccCChh--hhCccccCceeccccccc
Q 047948          114 EIGLLTHLTVLHISRNQLNGSIPQE--VGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       114 ~~~~l~~L~~L~ls~N~l~g~~P~~--~~~l~~L~~L~Ls~N~l~  156 (171)
                      .|..+++|++|++++|.+++.+|..  +.++++|++|+|++|.++
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~  136 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR  136 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence            6666667777777777666655554  666666666666666664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.42  E-value=5.5e-13  Score=98.71  Aligned_cols=98  Identities=19%  Similarity=0.240  Sum_probs=87.3

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|+|++|.+++..|. .|..++.|++|++++|.++...+..+            +|++.+..|..|..+++|+.|+
T Consensus        56 ~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  134 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS  134 (220)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence            4799999999999977787 89999999999999999985544333            7899988888999999999999


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +++|++++..+..+..+++|++|++++|++.
T Consensus       135 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            9999999777777999999999999999987

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.41  E-value=4.3e-13  Score=112.07  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=90.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      .++.|++++|.+++..|. .|..+++|++|++++|.+.+..|..+            +|++.+..|..++.+++|++|++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             cCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            789999999999977677 89999999999999999988777665            68888878888888888889988


Q ss_pred             ccCcccccCChhhhCccccCceecccccccc------ccchhhhccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLIF------WMVQSLVLLAIW  169 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~------~~~~~L~~L~l~  169 (171)
                      ++|++++..|..++++++|++|++++|+++.      ..+++|++|++.
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  161 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ  161 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence            8888886656778888888888888888762      224677777764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.41  E-value=3e-13  Score=102.93  Aligned_cols=110  Identities=22%  Similarity=0.178  Sum_probs=92.7

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .++++|++++|.+++..+. .+..++.|+.|++++|.+++..+..+            .|++++..+..+..+++|+.|+
T Consensus       109 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDG-VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccCHH-HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            3799999999999966555 68999999999999999997666443            7888877777789999999999


Q ss_pred             cccCcccccCChhhhCccccCceeccccccccccchhhhccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIW  169 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L~~L~l~  169 (171)
                      +++|++++..|..+..+++|++|++++|++.+. ++.|+.|++|
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-~~~l~~l~~~  230 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-CPGIRYLSEW  230 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-TTTTHHHHHH
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-CcHHHHHHHH
Confidence            999999987777789999999999999999754 4566666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=3.1e-13  Score=93.81  Aligned_cols=95  Identities=18%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCccccc-CCh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGS-IPQ  137 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~-~P~  137 (171)
                      +++.|++++|.+++.  . .+..++.|+.|++++|.++            +.+|..+..+++|++|++++|.+++. .|.
T Consensus        43 ~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~------------~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~  107 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVS------------GGLEVLAEKCPNLTHLNLSGNKIKDLSTIE  107 (149)
T ss_dssp             TCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCC------------SCTHHHHHHCTTCCEEECTTSCCCSHHHHG
T ss_pred             CCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCccc------------chHHHHhhhCCCCCEEECCCCcCCChHHHH
Confidence            566666666666644  3 4666666666666666665            34556667789999999999999863 447


Q ss_pred             hhhCccccCceeccccccccc---------cchhhhcccc
Q 047948          138 EVGQLTFLNHLILDLIFLIFW---------MVQSLVLLAI  168 (171)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~~~---------~~~~L~~L~l  168 (171)
                      .+..+++|++|++++|+++..         .+++|+.|++
T Consensus       108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            788999999999999988732         2356666665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.41  E-value=3.3e-13  Score=98.66  Aligned_cols=110  Identities=23%  Similarity=0.189  Sum_probs=87.8

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .++++|++++|.+++..+. .|..++.|++|++++|.+++..+..+            .|++.+..+..+..+++|+.|+
T Consensus        52 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  130 (208)
T 2o6s_A           52 TSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR  130 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence            3789999999998854444 67889999999999999886555433            6788876666788999999999


Q ss_pred             cccCcccccCChhhhCccccCceeccccccccccchhhhccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIW  169 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L~~L~l~  169 (171)
                      +++|++++..+..+..+++|++|++++|.+.+. ++.|+.|++|
T Consensus       131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-~~~l~~L~~~  173 (208)
T 2o6s_A          131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-CPGIRYLSEW  173 (208)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-TTTTHHHHHH
T ss_pred             CCCCccceeCHHHhccCCCccEEEecCCCeecC-CCCHHHHHHH
Confidence            999999966666688999999999999998743 4566666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.40  E-value=7.5e-13  Score=101.98  Aligned_cols=97  Identities=16%  Similarity=0.179  Sum_probs=51.4

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccc-cccccc------------cccccccCCccccCCcCCCEEe
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY-IILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g-~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      +++.|++++|.+.+..+. .+..++.|+.|++++|.+.+ .+|..+            +|++.+..|..+..+++|+.|+
T Consensus       127 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             TCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence            445555555555444444 45555555555555555544 233322            4555555555555555666666


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +++|++++..+..+..+++|++|++++|+++
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCc
Confidence            6666655444445555556666666666555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.39  E-value=1.2e-12  Score=99.36  Aligned_cols=97  Identities=26%  Similarity=0.183  Sum_probs=47.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+++..+. .|..++.|++|++++|.+++..+..+            +|.+.+..+..+..+++|+.|++
T Consensus        86 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIG-VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             TCCEEECCSSCCCCCCTT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCcCCHh-HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence            344444444444432222 34445555555555555444333222            34444433334555556666666


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|++++..+..|.++++|++|++++|+++
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            666655443344555566666666666555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.38  E-value=1.5e-12  Score=100.20  Aligned_cols=66  Identities=21%  Similarity=0.117  Sum_probs=40.5

Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      .|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|+++      +..+++|+.|++.
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  180 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence            55666555555666667777777777766444444566667777777777666      2334566666653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.38  E-value=7.7e-13  Score=101.92  Aligned_cols=111  Identities=20%  Similarity=0.190  Sum_probs=80.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccc-cCCccccCCcCCCEEe
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSG-QIPSEIGLLTHLTVLH  125 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g-~~p~~~~~l~~L~~L~  125 (171)
                      +++.|++++|.+++..+...+..++.|+.|++++|.+.+..+..+            +|.+.+ .+|..+..+++|++|+
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            456666666666644331256777777778887777776655544            677776 5677788888899999


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      +++|++++..|..+..+++|++|++++|+++      ...+++|+.|++.
T Consensus       182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred             CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence            9999888777888888888999999998887      2335677777774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.38  E-value=8.8e-13  Score=110.20  Aligned_cols=97  Identities=15%  Similarity=0.064  Sum_probs=64.3

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccc-ccccc------------cccccccCCccccCCcCCCEEe
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI-ILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~-~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      +++.|++++|.+.+..|. .+..++.|+.|++++|.+.+. +|..+            +|++++..|..+..+++|+.|+
T Consensus       425 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             TCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence            456666666666655555 566666666666666666653 44433            5666666666677777777777


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +++|++++..|..+.++++|++|++++|+++
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            7777777666777777777777777777766

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.37  E-value=4e-13  Score=104.18  Aligned_cols=110  Identities=17%  Similarity=0.119  Sum_probs=79.1

Q ss_pred             CCEEEEEcCCCccceecCCCCC--CCCCCCcEEEeecCcccccccc-----------cc------cccccccCCccccCC
Q 047948           58 GRVVGINLTSMSLNGTLLEFPF--SSFPHLAYLVLYNNELFYIILP-----------QI------TNKLSGQIPSEIGLL  118 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l--~~L~~L~~L~l~~n~l~g~~p~-----------~~------~n~l~g~~p~~~~~l  118 (171)
                      .++++|++++|.+++.+|. .+  ..++.|++|++++|.+++. |.           .+      +|++.+..|..++.+
T Consensus        95 ~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPP-PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCC-CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CCccEEEccCCcccchhHH-HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            3678888888888888887 65  7888888888888888865 32           22      677777776778888


Q ss_pred             cCCCEEecccCccccc--CChhh--hCccccCceecccccccc---------ccchhhhccccc
Q 047948          119 THLTVLHISRNQLNGS--IPQEV--GQLTFLNHLILDLIFLIF---------WMVQSLVLLAIW  169 (171)
Q Consensus       119 ~~L~~L~ls~N~l~g~--~P~~~--~~l~~L~~L~Ls~N~l~~---------~~~~~L~~L~l~  169 (171)
                      ++|++|++++|++.|.  +|..+  ..+++|++|++++|+++.         ..+++|++|++.
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls  236 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS  236 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence            8888888888887765  34444  677777777777777761         122466666663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.37  E-value=1.9e-13  Score=115.55  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=81.6

Q ss_pred             CCEEEEEcCCCcccee-----------------cCCCCCC--CCCCCcEEEeecCcccccccccc------------ccc
Q 047948           58 GRVVGINLTSMSLNGT-----------------LLEFPFS--SFPHLAYLVLYNNELFYIILPQI------------TNK  106 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~-----------------~p~~~l~--~L~~L~~L~l~~n~l~g~~p~~~------------~n~  106 (171)
                      .++++|+|++|.+++.                 +|. .+.  .++.|++|++++|.+.|.+|..+            .|+
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            3688888888888875                 777 777  88888888888888888888766            566


Q ss_pred             -ccc-cCCccccCC------cCCCEEecccCcccccCCh--hhhCccccCceecccccccccc-----chhhhcccc
Q 047948          107 -LSG-QIPSEIGLL------THLTVLHISRNQLNGSIPQ--EVGQLTFLNHLILDLIFLIFWM-----VQSLVLLAI  168 (171)
Q Consensus       107 -l~g-~~p~~~~~l------~~L~~L~ls~N~l~g~~P~--~~~~l~~L~~L~Ls~N~l~~~~-----~~~L~~L~l  168 (171)
                       ++| .+|..++.+      ++|++|++++|+++ .+|.  .++++++|++|++++|+++|.+     +++|++|++
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L  360 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL  360 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEEC
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEEC
Confidence             777 777777665      77778888777777 7777  7777777777777777776333     345555555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=1.7e-12  Score=92.78  Aligned_cols=84  Identities=23%  Similarity=0.186  Sum_probs=70.3

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCC-ccccCCcCCCEEecccCcccccCCh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIP-SEIGLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      +++.|+|++|.+++..|. .|..++.|+.|++++|++++             +| ..|..+++|++|++++|++++..+.
T Consensus        34 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-------------i~~~~~~~l~~L~~L~L~~N~l~~l~~~   99 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKLTA-------------IPTGVFDKLTQLTQLDLNDNHLKSIPRG   99 (174)
T ss_dssp             TCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCCCc-------------cChhHhCCcchhhEEECCCCccceeCHH
Confidence            678889999998876676 78888999999999888863             33 3468899999999999999955445


Q ss_pred             hhhCccccCceeccccccc
Q 047948          138 EVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .|..+++|++|+|++|++.
T Consensus       100 ~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A          100 AFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTTTCTTCSEEECCSSCBC
T ss_pred             HhccccCCCEEEeCCCCcc
Confidence            5899999999999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.37  E-value=1.8e-12  Score=105.20  Aligned_cols=103  Identities=20%  Similarity=0.230  Sum_probs=78.6

Q ss_pred             ccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------ccc
Q 047948           49 WSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNK  106 (171)
Q Consensus        49 w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~  106 (171)
                      |..|.|...+          +++.|+|++|.+++..+. .|..++.|+.|++++|.+.+..|..+            +|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            5677786432          789999999999977777 89999999999999999987766555            677


Q ss_pred             ccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccc
Q 047948          107 LSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL  152 (171)
Q Consensus       107 l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~  152 (171)
                      +.+..+..+..+++|++|++++|+++...+..|.++++|++|++++
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence            7766556677888888888888888854444566666666666665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.36  E-value=8.8e-13  Score=111.66  Aligned_cols=97  Identities=22%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+++..+. .|..++.|++|++++|.+.+..|..+            +|++++..+..|+.+++|++|++
T Consensus        26 ~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           26 NITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            566666666666644333 46666666666666666655544433            34444332234555555555555


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|++++..|..|+++++|++|++++|.++
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  134 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLS  134 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccCccChhHccccCCCCEEECCCCccc
Confidence            555555444444555555555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.36  E-value=1.1e-12  Score=95.20  Aligned_cols=108  Identities=15%  Similarity=0.198  Sum_probs=75.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++.|++++|.+. . ++ .+..++.|++|++++|.+++..|..+            .|++.+..|..++.+++|++|++
T Consensus        67 ~L~~L~l~~n~~~-~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           67 NIKDLTINNIHAT-N-YN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TCSEEEEESCCCS-C-CG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCEEEccCCCCC-c-ch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            5777777777554 2 22 46677777777777777776555444            56666666777888888888888


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc----cccchhhhcccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIWP  170 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~~  170 (171)
                      ++|.+.+.+| .+..+++|++|++++|+++    ...+++|+.|++.+
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECB
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeC
Confidence            8887333666 5778888888888888877    44556777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.36  E-value=1.3e-12  Score=107.37  Aligned_cols=119  Identities=17%  Similarity=0.120  Sum_probs=83.4

Q ss_pred             CcccceeeCCCCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-------------cccccccCCc
Q 047948           47 CAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-------------TNKLSGQIPS  113 (171)
Q Consensus        47 c~w~gv~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-------------~n~l~g~~p~  113 (171)
                      |.+.++.|..-.+++.|++++|.+++..|. .+..++.|+.|++++|.+++..|..+             +|.+++.  +
T Consensus       109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~  185 (487)
T 3oja_A          109 NNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--K  185 (487)
T ss_dssp             SCCCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--E
T ss_pred             CcCCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--c
Confidence            445566665445688888888888877666 77788888888888888887666543             5666654  2


Q ss_pred             cccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc-----cccchhhhccccc
Q 047948          114 EIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAIW  169 (171)
Q Consensus       114 ~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l~  169 (171)
                      ....+++|+.|++++|.+++ +|+.+..+++|++|++++|.++     ...+++|+.|++.
T Consensus       186 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~  245 (487)
T 3oja_A          186 GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR  245 (487)
T ss_dssp             CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred             ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence            23457788888888888884 5555777888888888888876     2334566666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.35  E-value=2.5e-12  Score=98.96  Aligned_cols=108  Identities=21%  Similarity=0.195  Sum_probs=78.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++.|++++|.++ .+|. .+..++.|++|++++|++++..|..+            +|++.+..+..+..+++|+.|++
T Consensus        78 ~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           78 VLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCEEECCCCcCC-cCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            5777777777776 5666 67788888888888888886655544            67777666666778888999999


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc-----cccchhhhcccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAI  168 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l  168 (171)
                      ++|++++..+..+..+++|++|+|++|+++     .....+|+.+++
T Consensus       156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred             CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence            998888444445677888888888888887     222335666655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.35  E-value=2.5e-12  Score=100.12  Aligned_cols=57  Identities=18%  Similarity=0.272  Sum_probs=40.9

Q ss_pred             CCcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc
Q 047948           46 PCAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI  103 (171)
Q Consensus        46 ~c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~  103 (171)
                      .|.|+.+.|...          ..++.|++++|.+++..+. .|..++.|++|++++|.+++..|..+
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAF   96 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHh
Confidence            457888888632          2677888888888765555 67788888888888888876666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=3e-12  Score=91.16  Aligned_cols=95  Identities=25%  Similarity=0.218  Sum_probs=78.6

Q ss_pred             EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhh
Q 047948           60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEV  139 (171)
Q Consensus        60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~  139 (171)
                      .+.++++++.++ .+|. .+  .+.|+.|++++|.+++            ..|..|..+++|++|++++|++++..|..|
T Consensus        11 ~~~l~~s~n~l~-~ip~-~~--~~~l~~L~L~~N~i~~------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f   74 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPT-GI--PTTTQVLYLYDNQITK------------LEPGVFDRLTQLTRLDLDNNQLTVLPAGVF   74 (170)
T ss_dssp             TTEEECTTSCCS-SCCS-CC--CTTCSEEECCSSCCCC------------CCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CCEEEeCCCCcC-ccCc-cC--CCCCcEEEcCCCcCCc------------cChhhhcCcccCCEEECCCCCcCccChhhc
Confidence            368999999998 5776 55  3789999999999874            335678899999999999999996666667


Q ss_pred             hCccccCceeccccccc------cccchhhhcccccc
Q 047948          140 GQLTFLNHLILDLIFLI------FWMVQSLVLLAIWP  170 (171)
Q Consensus       140 ~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~~  170 (171)
                      ..+++|++|+|++|+|+      +..+++|+.|++..
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            89999999999999998      34567888888753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.34  E-value=1.1e-12  Score=109.81  Aligned_cols=92  Identities=24%  Similarity=0.191  Sum_probs=64.1

Q ss_pred             EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecc
Q 047948           60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      ++.|++++|.+++ +|.  +..++.|+.|++++|.++ .+|..+            +|++++ +| .++.+++|+.|+++
T Consensus       443 L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCCC-CcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            4445555555543 332  445555555555555554 344333            344554 56 78999999999999


Q ss_pred             cCcccccC-ChhhhCccccCceecccccccc
Q 047948          128 RNQLNGSI-PQEVGQLTFLNHLILDLIFLIF  157 (171)
Q Consensus       128 ~N~l~g~~-P~~~~~l~~L~~L~Ls~N~l~~  157 (171)
                      +|++++.. |..++.+++|++|+|++|++++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            99999776 9999999999999999999983

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.34  E-value=2.8e-12  Score=97.42  Aligned_cols=97  Identities=21%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      .+++|++++|.+++..+. .|..++.|++|++++|.+.+..+..+            +|.+.+..|..+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            355666666665544443 55556666666666665554433332            45555555555555666666666


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|++++..+..+.++++|++|++++|.++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  137 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQ  137 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccc
Confidence            666665444444555666666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.33  E-value=3e-12  Score=101.20  Aligned_cols=97  Identities=26%  Similarity=0.226  Sum_probs=83.0

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|+|++|.+++..+. .|..++.|+.|++++|++.+..+..+            +|++.+..|..|..+++|+.|+
T Consensus        64 ~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccCEEECCCCcCCccChh-hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            4789999999999966666 79999999999999999987666544            7888888888999999999999


Q ss_pred             cccCcccccCChhh----hCccccCceeccccccc
Q 047948          126 ISRNQLNGSIPQEV----GQLTFLNHLILDLIFLI  156 (171)
Q Consensus       126 ls~N~l~g~~P~~~----~~l~~L~~L~Ls~N~l~  156 (171)
                      |++|+++ .+|..+    ..+++|++|+|++|+|+
T Consensus       143 L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             CCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            9999999 566654    57899999999999998

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.32  E-value=5.3e-12  Score=102.07  Aligned_cols=104  Identities=19%  Similarity=0.241  Sum_probs=77.9

Q ss_pred             ccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------ccc
Q 047948           49 WSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNK  106 (171)
Q Consensus        49 w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~  106 (171)
                      +..|.|...          ..++.|+|++|.+++..+. .|..+++|+.|++++|.+.+..+..+            .|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            567888643          2688999999999976666 89999999999999999887665544            577


Q ss_pred             ccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccc
Q 047948          107 LSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI  153 (171)
Q Consensus       107 l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N  153 (171)
                      ++...+..+..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~  170 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL  170 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence            77655556778888888888888887555555666666666666663

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=3.8e-12  Score=91.00  Aligned_cols=93  Identities=23%  Similarity=0.215  Sum_probs=76.7

Q ss_pred             EEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhh
Q 047948           61 VGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVG  140 (171)
Q Consensus        61 ~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~  140 (171)
                      +.++++++++. .+|. .+.  +.|+.|++++|.+++            ..|..|..+++|++|+|++|++++..+..|.
T Consensus        15 ~~l~~~~n~l~-~iP~-~~~--~~L~~L~Ls~N~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~   78 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPA-GIP--TDKQRLWLNNNQITK------------LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD   78 (174)
T ss_dssp             SEEECCSSCCS-SCCS-CCC--TTCSEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cEEEeCCCCCC-ccCC-CcC--CCCcEEEeCCCCccc------------cCHHHhcCCcCCCEEECCCCCCCccChhHhC
Confidence            67889999986 6777 554  799999999999874            3356788999999999999999965555578


Q ss_pred             CccccCceeccccccc------cccchhhhccccc
Q 047948          141 QLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       141 ~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      ++++|++|+|++|+|+      +..+++|+.|++.
T Consensus        79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            9999999999999998      3446788888874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.32  E-value=4.4e-12  Score=94.30  Aligned_cols=97  Identities=29%  Similarity=0.255  Sum_probs=82.8

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|+|++|.++...+. .|..++.|+.|++++|.+++..+..+            .|++. .+|..+..+++|++|+
T Consensus        64 ~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  141 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA  141 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred             cCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence            3789999999999744334 67899999999999999987655443            67877 7888999999999999


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +++|++++..+..+..+++|++|++++|++.
T Consensus       142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            9999999666667899999999999999987

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.32  E-value=7.8e-12  Score=97.44  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=78.6

Q ss_pred             CCcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948           46 PCAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------  103 (171)
Q Consensus        46 ~c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------  103 (171)
                      .|.|+.+.|...          .+++.|++++|.+.+..+. .|..++.|++|++++|.+++..|..+            
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            367888888642          2689999999999876666 79999999999999999987767655            


Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .|++. .+|..+.  ++|++|++++|++++..+..+.++++|++|++++|.++
T Consensus       111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            45555 4555443  67777777777777444445677777777777777664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.32  E-value=4.8e-12  Score=104.77  Aligned_cols=97  Identities=23%  Similarity=0.305  Sum_probs=58.7

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+++..+. .|..++.|++|++++|.+++..|..+            .|++.+..+..++.+++|++|++
T Consensus        53 ~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  131 (570)
T 2z63_A           53 ELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (570)
T ss_dssp             SCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred             CceEEECCCCcCCccCcc-cccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence            456666666666544444 56666666666666666655444433            45555433334666667777777


Q ss_pred             ccCcccc-cCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNG-SIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|.+++ .+|..++++++|++|++++|+++
T Consensus       132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             CCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            7776665 35666777777777777777665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.32  E-value=5.6e-12  Score=100.25  Aligned_cols=97  Identities=22%  Similarity=0.142  Sum_probs=66.2

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+++..+. .|..++.|++|++++|.+.+..|..+            +|++....+..+..+++|++|++
T Consensus        70 ~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            466677777777655555 67777777777777777776655543            56665332233567777777777


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|++++..|..+..+++|++|++++|+++
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            777777666666777777777777777776

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=3.4e-12  Score=92.66  Aligned_cols=106  Identities=20%  Similarity=0.192  Sum_probs=89.4

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++.+++++|.+. .++.  +..+++|+.|++++|.+...  ..+            +|++++..|..++.+++|++|++
T Consensus        45 ~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           45 SLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             TCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            6899999999998 5554  88899999999999976532  222            78888888888999999999999


Q ss_pred             ccCcccccCChhhhCccccCceeccccc-cc----cccchhhhccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIF-LI----FWMVQSLVLLAIW  169 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~-l~----~~~~~~L~~L~l~  169 (171)
                      ++|++++..|..+..+++|++|++++|+ ++    ...+++|+.|++.
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ  167 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECT
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECC
Confidence            9999998889999999999999999998 65    4556778888774

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.31  E-value=3.3e-12  Score=103.98  Aligned_cols=109  Identities=21%  Similarity=0.197  Sum_probs=74.1

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|+|++|.+++..|. .|..++.|++|++++|.+....+..+            .|++.+..|..+..+++|+.|++
T Consensus        57 ~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           57 HLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            677888888887766666 77778888888888877775443332            56666666666777777777777


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI  168 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l  168 (171)
                      ++|.+++..|..|.++++|++|++++|+++      ...+++|+.|++
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL  183 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence            777777666666777777777777777665      223445555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.31  E-value=2.9e-12  Score=106.03  Aligned_cols=111  Identities=21%  Similarity=0.178  Sum_probs=74.5

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------ccccc-ccCCccccCCcCCCEEe
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLS-GQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~-g~~p~~~~~l~~L~~L~  125 (171)
                      +++.|++++|.+.+..+...+..++.|+.|++++|.+.+..|..+            +|.+. +.+|..+..+++|+.|+
T Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence            455555555555544442246667777777777777766655444            56665 56777777788888888


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      +++|++++..|..+.++++|++|++++|+++      +..+++|+.|++.
T Consensus       477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  526 (570)
T 2z63_A          477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH  526 (570)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence            8888888777777778888888888888776      2334566666664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=4.5e-12  Score=99.30  Aligned_cols=97  Identities=22%  Similarity=0.296  Sum_probs=75.1

Q ss_pred             CCcccceeeCCC------------CCEEEEEcCC-CccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCC
Q 047948           46 PCAWSGIHCNHA------------GRVVGINLTS-MSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIP  112 (171)
Q Consensus        46 ~c~w~gv~c~~~------------~~v~~L~l~~-~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p  112 (171)
                      .|.|..|.|...            .+++.|+|++ |.+++..+. .|..|++|+.|+|++|++++            ..|
T Consensus         7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~------------~~~   73 (347)
T 2ifg_A            7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRF------------VAP   73 (347)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCE------------ECT
T ss_pred             cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccce------------eCH
Confidence            388888888754            1488888986 888866556 78888999999999888774            344


Q ss_pred             ccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       113 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ..|..+++|+.|+|++|+|++..|..+..++ |++|+|.+|++.
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            6788899999999999999954444455555 999999999887

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.31  E-value=6.6e-12  Score=93.54  Aligned_cols=107  Identities=16%  Similarity=0.169  Sum_probs=75.2

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCc-ccccccccc------------c-ccccccCCccccCCcCCCEE
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNE-LFYIILPQI------------T-NKLSGQIPSEIGLLTHLTVL  124 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~-l~g~~p~~~------------~-n~l~g~~p~~~~~l~~L~~L  124 (171)
                      .++.|++++|++++..+. .|..++.|+.|++++|. ++...+..+            + |++++..+..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            688888888888865555 78888889999998886 665444333            4 67776655677788888888


Q ss_pred             ecccCcccccCChhhhCccccC---ceecccc-ccc------cccchhhh-cccc
Q 047948          125 HISRNQLNGSIPQEVGQLTFLN---HLILDLI-FLI------FWMVQSLV-LLAI  168 (171)
Q Consensus       125 ~ls~N~l~g~~P~~~~~l~~L~---~L~Ls~N-~l~------~~~~~~L~-~L~l  168 (171)
                      ++++|++++ +|. +..+++|+   +|++++| .++      +..+++|+ .|++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence            888887774 665 66666666   7777777 665      23344555 5555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.31  E-value=1.3e-12  Score=103.86  Aligned_cols=109  Identities=22%  Similarity=0.178  Sum_probs=90.1

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++.+++.++.+. .+|...+..++.|++|++++|.+.+..+..+            +|.+.+..|..++.+++|++|++
T Consensus        46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            6788999999887 5665246889999999999999987766555            68888877888899999999999


Q ss_pred             ccCcccccCChh-hhCccccCceeccccccc------cccchhhhccccc
Q 047948          127 SRNQLNGSIPQE-VGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       127 s~N~l~g~~P~~-~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      ++|+++ .+|.. +.++++|++|++++|+++      +..+++|++|++.
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  173 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  173 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence            999999 66655 688999999999999987      3445778888774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=6.9e-13  Score=115.84  Aligned_cols=110  Identities=17%  Similarity=0.153  Sum_probs=87.3

Q ss_pred             CCEEEEEcCCCccce-----------------ecCCCCCC--CCCCCcEEEeecCcccccccccc------------ccc
Q 047948           58 GRVVGINLTSMSLNG-----------------TLLEFPFS--SFPHLAYLVLYNNELFYIILPQI------------TNK  106 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~-----------------~~p~~~l~--~L~~L~~L~l~~n~l~g~~p~~~------------~n~  106 (171)
                      .+++.|+|++|.+++                 .+|. .+.  .++.|+.|++++|.+.+.+|..+            .|+
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            478999999999998                 3888 777  89999999999999998888766            676


Q ss_pred             -ccc-cCCccccCCc-------CCCEEecccCcccccCCh--hhhCccccCceeccccccc----cccchhhhccccc
Q 047948          107 -LSG-QIPSEIGLLT-------HLTVLHISRNQLNGSIPQ--EVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW  169 (171)
Q Consensus       107 -l~g-~~p~~~~~l~-------~L~~L~ls~N~l~g~~P~--~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~  169 (171)
                       ++| .+|..++.++       +|+.|++++|+++ .+|.  .++++++|++|+|++|+++    +..+++|+.|++.
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLD  603 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECc
Confidence             888 7887666555       8888888888888 8887  7888888888888888776    3334566666663

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.30  E-value=5.2e-12  Score=105.30  Aligned_cols=100  Identities=22%  Similarity=0.280  Sum_probs=87.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|+|++|.+++..+. .|.+|++|++|++++|++++..+..+            .|++++..+..|+.+++|++|++
T Consensus        77 ~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L  155 (635)
T 4g8a_A           77 ELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  155 (635)
T ss_dssp             TCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence            799999999999965555 89999999999999999987666554            78888776677999999999999


Q ss_pred             ccCcccc-cCChhhhCccccCceecccccccccc
Q 047948          127 SRNQLNG-SIPQEVGQLTFLNHLILDLIFLIFWM  159 (171)
Q Consensus       127 s~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~~~~  159 (171)
                      ++|.+++ .+|..++.+++|++|++++|+++...
T Consensus       156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             ccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            9999985 57888999999999999999998433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.29  E-value=1.2e-11  Score=88.04  Aligned_cols=105  Identities=24%  Similarity=0.179  Sum_probs=84.3

Q ss_pred             EEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEeccc
Q 047948           61 VGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISR  128 (171)
Q Consensus        61 ~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~  128 (171)
                      +.+++++++++ .+|. .+  .+.|+.|++++|.+.+..+..+            +|++++..+..+..+++|++|++++
T Consensus        10 ~~l~~~~~~l~-~~p~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TEEECCSSCCS-SCCT-TC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCCc-cCCC-CC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            67889999887 5555 44  3689999999999987655443            6888876666688999999999999


Q ss_pred             CcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          129 NQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       129 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      |++++..+..+..+++|++|++++|+++      +..+++|+.|++.
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            9999666667889999999999999998      2345678888774

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=1.6e-12  Score=106.75  Aligned_cols=109  Identities=23%  Similarity=0.210  Sum_probs=77.0

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccc-------------------cc---------cccccc
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILP-------------------QI---------TNKLSG  109 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~-------------------~~---------~n~l~g  109 (171)
                      .+++.|+|++|.+++..+   +..++.|+.|++++|.+++..+.                   .+         +|.+++
T Consensus        58 ~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~  134 (487)
T 3oja_A           58 TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM  134 (487)
T ss_dssp             TTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCS
T ss_pred             CCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCC
Confidence            478999999999886553   67788888888888887754321                   00         566776


Q ss_pred             cCCccccCCcCCCEEecccCcccccCChhhh-CccccCceeccccccc----cccchhhhccccc
Q 047948          110 QIPSEIGLLTHLTVLHISRNQLNGSIPQEVG-QLTFLNHLILDLIFLI----FWMVQSLVLLAIW  169 (171)
Q Consensus       110 ~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~-~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~  169 (171)
                      ..|..++.+++|+.|++++|.+++..|..+. .+++|++|+|++|.++    ...+++|+.|++.
T Consensus       135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls  199 (487)
T 3oja_A          135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS  199 (487)
T ss_dssp             GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred             CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC
Confidence            6677777778888888888888877777665 6777777777777776    2235566666653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.29  E-value=5.8e-12  Score=104.72  Aligned_cols=107  Identities=22%  Similarity=0.231  Sum_probs=86.2

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|++++|.+++..+. .|..++.|++|++++|.+++..|..+            +|+++ .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            4789999999999876666 89999999999999999998777665            67777 56665  789999999


Q ss_pred             cccCcccc-cCChhhhCccccCceecccccccc---ccchhh--hcccc
Q 047948          126 ISRNQLNG-SIPQEVGQLTFLNHLILDLIFLIF---WMVQSL--VLLAI  168 (171)
Q Consensus       126 ls~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~~---~~~~~L--~~L~l  168 (171)
                      +++|++++ .+|..++++++|++|++++|+++.   ..++.|  ++|++
T Consensus       128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L  176 (562)
T 3a79_B          128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL  176 (562)
T ss_dssp             CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEE
T ss_pred             CCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEe
Confidence            99999986 456889999999999999999873   333344  55554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.29  E-value=7.5e-12  Score=97.14  Aligned_cols=106  Identities=17%  Similarity=0.105  Sum_probs=59.5

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-------------cccccccCCccccCCcCCCEEe
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      +++.|++++|.+++..+. .+..++.|+.|++++|.+.+..+..+             +|.+++. | ....+++|+.|+
T Consensus       121 ~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~  197 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLD  197 (317)
T ss_dssp             SCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEE
T ss_pred             CCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEE
Confidence            456666666666654444 56666666666666666665443322             4444433 1 223456666666


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc-----cccchhhhcccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAI  168 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l  168 (171)
                      +++|+++ .+|+.+..+++|++|++++|+++     ...+++|+.|++
T Consensus       198 Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l  244 (317)
T 3o53_A          198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL  244 (317)
T ss_dssp             CCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred             CCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEc
Confidence            6666666 34444666666666666666665     223345555555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.28  E-value=7.7e-12  Score=101.46  Aligned_cols=39  Identities=23%  Similarity=0.173  Sum_probs=18.7

Q ss_pred             CcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          118 LTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       118 l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +++|+.|++++|++++..|..|.++++|++|++++|+++
T Consensus       217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  255 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS  255 (452)
T ss_dssp             CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence            334444444444444444444555555555555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.27  E-value=1.6e-12  Score=111.71  Aligned_cols=100  Identities=22%  Similarity=0.292  Sum_probs=88.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      .++.|+|++|.+. .+|. .+..++.|+.|+|++|.++ .+|..+            +|.++ .+|..++.+++|++|+|
T Consensus       225 ~L~~L~Ls~n~l~-~l~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          225 LWHALDLSNLQIF-NISA-NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCEEECTTSCCS-CCCG-GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCcEEECCCCCCC-CCCh-hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            5778999999988 7777 7889999999999999998 778766            78888 78999999999999999


Q ss_pred             ccCcccccCChhhhCccccCceeccccccccccchhh
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSL  163 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L  163 (171)
                      ++|.++ .+|..|+.+++|++|+|++|+|++.++..+
T Consensus       301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            999998 899999999999999999999985544433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.27  E-value=2.3e-12  Score=105.90  Aligned_cols=106  Identities=21%  Similarity=0.280  Sum_probs=71.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+++..+. .|..++.|++|++++|++++..|..+            +|+++ .+|..  .+++|++|++
T Consensus        22 ~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           22 KTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             cccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            566666666666644444 56666666666666666665555444            45555 35554  7888999999


Q ss_pred             ccCcccc-cCChhhhCccccCceecccccccc---ccchhh--hcccc
Q 047948          127 SRNQLNG-SIPQEVGQLTFLNHLILDLIFLIF---WMVQSL--VLLAI  168 (171)
Q Consensus       127 s~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~~---~~~~~L--~~L~l  168 (171)
                      ++|++++ .+|..++++++|++|++++|+++.   ..+++|  +.|++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL  145 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEE
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEe
Confidence            9999886 578888899999999999988873   333344  55544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.27  E-value=9.2e-12  Score=100.69  Aligned_cols=40  Identities=25%  Similarity=0.235  Sum_probs=19.4

Q ss_pred             CCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          117 LLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       117 ~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .+++|+.|++++|++++..|..|.++++|++|++++|+++
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ  244 (440)
T ss_dssp             TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             CCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence            3344444445555555444444555555555555554444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.26  E-value=3.4e-12  Score=88.48  Aligned_cols=97  Identities=24%  Similarity=0.239  Sum_probs=83.8

Q ss_pred             CEEEEEcCCCccc-eecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948           59 RVVGINLTSMSLN-GTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        59 ~v~~L~l~~~~l~-~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      +++.|++++|.++ +.+|. .+..++.|+.|++++|.+++             + ..++.+++|++|++++|.+++.+|.
T Consensus        18 ~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~-------------~-~~~~~l~~L~~L~Ls~n~i~~~~~~   82 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTS-------------I-ANLPKLNKLKKLELSDNRVSGGLEV   82 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCC-------------C-TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred             cCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCC-------------c-hhhhcCCCCCEEECCCCcccchHHH
Confidence            6899999999998 78888 88999999999999998863             2 5678899999999999999987998


Q ss_pred             hhhCccccCceecccccccc-------ccchhhhcccccc
Q 047948          138 EVGQLTFLNHLILDLIFLIF-------WMVQSLVLLAIWP  170 (171)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~~-------~~~~~L~~L~l~~  170 (171)
                      .+..+++|++|++++|+++.       ..+++|++|++..
T Consensus        83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN  122 (149)
T ss_dssp             HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred             HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence            88889999999999999883       3456778887753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.25  E-value=9.8e-12  Score=103.86  Aligned_cols=109  Identities=17%  Similarity=0.114  Sum_probs=63.5

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccc-c--ccc------------cccccccCCccccCCcCCCE
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII-L--PQI------------TNKLSGQIPSEIGLLTHLTV  123 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~-p--~~~------------~n~l~g~~p~~~~~l~~L~~  123 (171)
                      +++.|++++|.+.+..+. .+..++.|+.|++++|.+.+.. |  ..+            +|++.+..|..++.+++|+.
T Consensus       426 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  504 (606)
T 3t6q_A          426 LLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH  504 (606)
T ss_dssp             TCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence            455555555555544444 5555666666666666655421 1  111            55666666666666666777


Q ss_pred             EecccCcccccCChhhhCccccCceecccccccc------ccchhhhccccc
Q 047948          124 LHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIF------WMVQSLVLLAIW  169 (171)
Q Consensus       124 L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~------~~~~~L~~L~l~  169 (171)
                      |++++|++++..|..+.+++.| +|++++|++++      ..+++|+.|++.
T Consensus       505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  555 (606)
T 3t6q_A          505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR  555 (606)
T ss_dssp             EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred             EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence            7777777766666666666666 66677766662      223455566553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.24  E-value=3.3e-12  Score=98.82  Aligned_cols=110  Identities=16%  Similarity=0.143  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccc--cc-c----cc---------cccccc--cCCc-cccCC
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI--IL-P----QI---------TNKLSG--QIPS-EIGLL  118 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~--~p-~----~~---------~n~l~g--~~p~-~~~~l  118 (171)
                      .++++|++++|.+.+..+. .+..++.|++|++++|++.+.  ++ .    .+         +|+++.  ..+. .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            3788899999998866666 788899999999999987642  11 1    11         455531  1111 13455


Q ss_pred             cCCCEEecccCcccccCChhhhCc---cccCceeccccccc---cccchhhhcccc
Q 047948          119 THLTVLHISRNQLNGSIPQEVGQL---TFLNHLILDLIFLI---FWMVQSLVLLAI  168 (171)
Q Consensus       119 ~~L~~L~ls~N~l~g~~P~~~~~l---~~L~~L~Ls~N~l~---~~~~~~L~~L~l  168 (171)
                      ++|++|++++|++++..|+.+..+   ++|++|++++|+++   ...+++|++|++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~L  279 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDL  279 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEEC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEEC
Confidence            666666666666665556555554   46666666666665   222345555555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.24  E-value=1.2e-11  Score=101.53  Aligned_cols=109  Identities=23%  Similarity=0.248  Sum_probs=61.2

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccc--cccccc------------cccccccCCcc-ccCC-----
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY--IILPQI------------TNKLSGQIPSE-IGLL-----  118 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g--~~p~~~------------~n~l~g~~p~~-~~~l-----  118 (171)
                      +++.|++++|.+++.+|. .+..++.|+.|++++|.+.+  .+|..+            +|.+.+.+|.. +..+     
T Consensus       325 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          325 PFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             cccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            456666666666555555 55555566666666555553  222211            34444333322 2222     


Q ss_pred             -----------------cCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          119 -----------------THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       119 -----------------~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                                       ++|+.|++++|+++ .+|..+..+++|++|++++|+++      ...+++|++|++.
T Consensus       404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence                             56666666666666 66666667777777777777776      2234456666663

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.23  E-value=2.1e-11  Score=88.48  Aligned_cols=78  Identities=23%  Similarity=0.202  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|+|++|.+++..+. .|..++.|+.|++++|.+++..|..+            +|.++...+..+..+++|+.|+
T Consensus        54 ~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           54 KHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCEeCHh-HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            4789999999999966666 89999999999999999998777655            7888866666788999999999


Q ss_pred             cccCcccccCC
Q 047948          126 ISRNQLNGSIP  136 (171)
Q Consensus       126 ls~N~l~g~~P  136 (171)
                      +++|.+.....
T Consensus       133 L~~N~~~C~c~  143 (193)
T 2wfh_A          133 IGANPLYCDCN  143 (193)
T ss_dssp             CCSSCEECSGG
T ss_pred             eCCCCeecCCc
Confidence            99999985433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.23  E-value=2e-11  Score=95.01  Aligned_cols=107  Identities=16%  Similarity=0.200  Sum_probs=57.8

Q ss_pred             EEEEEcCCCccce--ecCCCCCCCCCCCcEEEeecCcccccccccc----------cccccccCCccccCCcCCCEEecc
Q 047948           60 VVGINLTSMSLNG--TLLEFPFSSFPHLAYLVLYNNELFYIILPQI----------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        60 v~~L~l~~~~l~~--~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~----------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      ++.+++++|.+..  ..+. .+..++.|+.|++++|.++. +|..+          +|++.+..|..+..+++|+.|+++
T Consensus       147 L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  224 (330)
T 1xku_A          147 MIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS  224 (330)
T ss_dssp             CCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred             ccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCcccc-CCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            4444444444431  2233 44555555555555555542 22221          455655555666666666666666


Q ss_pred             cCcccccCChhhhCccccCceeccccccc-----cccchhhhcccc
Q 047948          128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAI  168 (171)
Q Consensus       128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l  168 (171)
                      +|.+++..+..+..+++|++|++++|+++     ...+++|++|++
T Consensus       225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL  270 (330)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred             CCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence            66666555556666666666666666665     223345555555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.22  E-value=9.2e-12  Score=105.42  Aligned_cols=110  Identities=20%  Similarity=0.141  Sum_probs=76.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      ++++|++++|.+.+..|. .+..++.|++|++++|.++...+..+            .|++.+..|..++.+++|++|++
T Consensus        50 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           50 QLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             cCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            577777777777765565 66777777777777777764433333            56666655567778888888888


Q ss_pred             ccCcccccCChhhhCccccCceeccccccccc--------cchhhhccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLIFW--------MVQSLVLLAIW  169 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~--------~~~~L~~L~l~  169 (171)
                      ++|.+++..|..++++++|++|++++|.+++.        ..++|+.|++.
T Consensus       129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~  179 (680)
T 1ziw_A          129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS  179 (680)
T ss_dssp             CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred             CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence            88888877777777788888888888877622        12466666663

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.22  E-value=6.1e-12  Score=97.47  Aligned_cols=98  Identities=18%  Similarity=0.118  Sum_probs=53.5

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccc--cc-----cc---------cccccc--cCCc-cccCC
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII--LP-----QI---------TNKLSG--QIPS-EIGLL  118 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~--p~-----~~---------~n~l~g--~~p~-~~~~l  118 (171)
                      .++++|++++|.+.+..+. .+..++.|++|++++|++.+.+  |.     .+         +|++++  .++. .+..+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l  227 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR  227 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence            3567777777777655555 6777777777777777765431  11     11         444442  1221 22345


Q ss_pred             cCCCEEecccCcccccCC-hhhhCccccCceeccccccc
Q 047948          119 THLTVLHISRNQLNGSIP-QEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       119 ~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|++|++++|++++..| ..+..+++|++|++++|+++
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            555555555555555443 23344555555555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.21  E-value=1.3e-11  Score=88.08  Aligned_cols=94  Identities=19%  Similarity=0.213  Sum_probs=64.3

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh-
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ-  137 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~-  137 (171)
                      +++.|++++|.+++.  . .+..++.|+.|++++|.+++..            |..+..+++|++|++++|+++ .+|. 
T Consensus        43 ~L~~L~Ls~N~l~~~--~-~l~~l~~L~~L~Ls~N~l~~~~------------~~~~~~l~~L~~L~L~~N~i~-~~~~~  106 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNRICRIG------------EGLDQALPDLTELILTNNSLV-ELGDL  106 (176)
T ss_dssp             CCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSCCCEEC------------SCHHHHCTTCCEEECCSCCCC-CGGGG
T ss_pred             CCCEEECCCCCCCcc--c-ccccCCCCCEEECCCCcccccC------------cchhhcCCCCCEEECCCCcCC-cchhh
Confidence            678888888887754  3 5777888888888888776321            223366777777777777775 5665 


Q ss_pred             -hhhCccccCceeccccccc---------cccchhhhcccc
Q 047948          138 -EVGQLTFLNHLILDLIFLI---------FWMVQSLVLLAI  168 (171)
Q Consensus       138 -~~~~l~~L~~L~Ls~N~l~---------~~~~~~L~~L~l  168 (171)
                       .+..+++|++|++++|+++         ...+++|+.|++
T Consensus       107 ~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A          107 DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence             6777777777777777775         223445666655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.21  E-value=8.1e-12  Score=96.60  Aligned_cols=110  Identities=15%  Similarity=0.012  Sum_probs=81.3

Q ss_pred             CEEEEEcCCCccceecCCCCC--CCCCCCcEEEeecCcccccccc----------cc------cccccccCCccccCCcC
Q 047948           59 RVVGINLTSMSLNGTLLEFPF--SSFPHLAYLVLYNNELFYIILP----------QI------TNKLSGQIPSEIGLLTH  120 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l--~~L~~L~~L~l~~n~l~g~~p~----------~~------~n~l~g~~p~~~~~l~~  120 (171)
                      ++++|++++|.+.+..|. .+  ..++.|+.|++++|.+.+..+.          .+      .|++.+..|..++.+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            589999999999988888 77  8899999999999999875431          11      77887777778888888


Q ss_pred             CCEEecccCccccc--CC--hhhhCccccCceeccccccc--c-------ccchhhhccccc
Q 047948          121 LTVLHISRNQLNGS--IP--QEVGQLTFLNHLILDLIFLI--F-------WMVQSLVLLAIW  169 (171)
Q Consensus       121 L~~L~ls~N~l~g~--~P--~~~~~l~~L~~L~Ls~N~l~--~-------~~~~~L~~L~l~  169 (171)
                      |++|++++|++.+.  ++  ..+..+++|++|++++|+++  .       ..+++|++|++.
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls  232 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLS  232 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECT
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECC
Confidence            99999998887652  22  22356777777777777775  1       123566666663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.21  E-value=9e-12  Score=102.85  Aligned_cols=99  Identities=24%  Similarity=0.178  Sum_probs=77.9

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccc-cCCccccCCcCCCEE
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSG-QIPSEIGLLTHLTVL  124 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g-~~p~~~~~l~~L~~L  124 (171)
                      .++++|++++|.+++..+. .|..++.|++|++++|.+.+..|..+            +|.+.+ .+|..++.+++|++|
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  128 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL  128 (549)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CcccEEECCCCCcCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence            4788999999998877666 78899999999999998887666534            677775 456778888888888


Q ss_pred             ecccCcccccCC-hhhhCccccCceecccccccc
Q 047948          125 HISRNQLNGSIP-QEVGQLTFLNHLILDLIFLIF  157 (171)
Q Consensus       125 ~ls~N~l~g~~P-~~~~~l~~L~~L~Ls~N~l~~  157 (171)
                      ++++|.+.+.+| ..+.++++|++|++++|++++
T Consensus       129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             ECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            888888555665 467888888888888888773

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.21  E-value=2.9e-11  Score=94.24  Aligned_cols=97  Identities=18%  Similarity=0.122  Sum_probs=52.5

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccc--cccccc--------------------------------c
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY--IILPQI--------------------------------T  104 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g--~~p~~~--------------------------------~  104 (171)
                      ++++|++++|.+.+..+. .+..++.|+.|++++|.+..  ..|..+                                +
T Consensus       124 ~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~  202 (332)
T 2ft3_A          124 SLVELRIHDNRIRKVPKG-VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH  202 (332)
T ss_dssp             TCCEEECCSSCCCCCCSG-GGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS
T ss_pred             cCCEEECCCCccCccCHh-HhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC
Confidence            455555555555532222 46667777777777776642  222111                                3


Q ss_pred             ccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       105 n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      |.+.+..|..+..+++|+.|++++|++++..|..+..+++|++|++++|+++
T Consensus       203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  254 (332)
T 2ft3_A          203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS  254 (332)
T ss_dssp             SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence            4444444445555556666666666665544445555555666666655554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=3e-11  Score=94.60  Aligned_cols=93  Identities=23%  Similarity=0.145  Sum_probs=76.4

Q ss_pred             EEEcCCC-ccceecCCCCCCCCCCCcEEEeec-CcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhh
Q 047948           62 GINLTSM-SLNGTLLEFPFSSFPHLAYLVLYN-NELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEV  139 (171)
Q Consensus        62 ~L~l~~~-~l~~~~p~~~l~~L~~L~~L~l~~-n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~  139 (171)
                      .++.+++ +++ .+|.  +..+++|+.|+|++ |.+.+            ..|..|..+++|+.|+|++|+|++..|..|
T Consensus        12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~   76 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQH------------LELRDLRGLGELRNLTIVKSGLRFVAPDAF   76 (347)
T ss_dssp             CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCE------------ECGGGSCSCCCCSEEECCSSCCCEECTTGG
T ss_pred             EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCC------------cChhHhccccCCCEEECCCCccceeCHHHh
Confidence            4688888 887 5776  88999999999996 98874            333678999999999999999999888899


Q ss_pred             hCccccCceeccccccccccc-----hhhhccccc
Q 047948          140 GQLTFLNHLILDLIFLIFWMV-----QSLVLLAIW  169 (171)
Q Consensus       140 ~~l~~L~~L~Ls~N~l~~~~~-----~~L~~L~l~  169 (171)
                      .++++|++|+|++|+|+....     ..|+.|++.
T Consensus        77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~  111 (347)
T 2ifg_A           77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS  111 (347)
T ss_dssp             GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECC
T ss_pred             cCCcCCCEEeCCCCccceeCHHHcccCCceEEEee
Confidence            999999999999999982211     127777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.20  E-value=2.7e-11  Score=95.30  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=77.7

Q ss_pred             CcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-------------
Q 047948           47 CAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-------------  103 (171)
Q Consensus        47 c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-------------  103 (171)
                      |.+..|.|...          .++++|+|++|+++ .+|...|.+|++|++|++++|.+.+.+|...             
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            67888889642          26899999999998 5665379999999999999999877666432             


Q ss_pred             -cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceec
Q 047948          104 -TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL  150 (171)
Q Consensus       104 -~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~L  150 (171)
                       .|++....|..|..+++|++|++++|++++..+..+....++..+++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence             57788777788899999999999999988544434433334444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.20  E-value=2.8e-11  Score=100.59  Aligned_cols=109  Identities=22%  Similarity=0.251  Sum_probs=62.3

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccc--cccccc------------cccccccCCcc-ccCC-----
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY--IILPQI------------TNKLSGQIPSE-IGLL-----  118 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g--~~p~~~------------~n~l~g~~p~~-~~~l-----  118 (171)
                      +++.|++++|.+++.+|. .+..++.|+.|++++|.+++  .+|..+            +|++.+.+|.. +..+     
T Consensus       354 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~  432 (562)
T 3a79_B          354 SFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV  432 (562)
T ss_dssp             CCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred             CceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence            455666666665554554 55555555555555555554  112211            34444433321 2222     


Q ss_pred             -----------------cCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          119 -----------------THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       119 -----------------~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                                       ++|+.|++++|+++ .+|..+..+++|++|++++|+++      ...+++|+.|++.
T Consensus       433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             EECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred             EECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence                             56777777777777 67776677788888888888777      2334566666664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.19  E-value=1.7e-11  Score=96.25  Aligned_cols=97  Identities=25%  Similarity=0.224  Sum_probs=67.5

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCc--cccCCcCCCE
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPS--EIGLLTHLTV  123 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~--~~~~l~~L~~  123 (171)
                      .+++.|++++|.+++..+. .|..++.|++|++++|.+++..+..+            +|++.+ +|.  .+..+++|++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQI  153 (353)
T ss_dssp             TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCE
T ss_pred             CCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcE
Confidence            3788889998888876666 78888888888888888875443322            566654 333  5667777777


Q ss_pred             EecccCc-ccccCChhhhCccccCceeccccccc
Q 047948          124 LHISRNQ-LNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       124 L~ls~N~-l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      |++++|+ +++..|..+.++++|++|++++|+++
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            7777773 55444556677777777777777665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.18  E-value=8.4e-12  Score=104.51  Aligned_cols=114  Identities=24%  Similarity=0.309  Sum_probs=76.9

Q ss_pred             CCCCCC-----cccce-eeCCCCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc---------ccc
Q 047948           42 TKISPC-----AWSGI-HCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TNK  106 (171)
Q Consensus        42 ~~~~~c-----~w~gv-~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n~  106 (171)
                      ...++|     .|.|+ .|.. ++++.|++++|.+++ +|. .+  ++.|+.|++++|.++ .+|..+         +|+
T Consensus        38 ~~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~  111 (571)
T 3cvr_A           38 KQALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLPELPASLEYLDACDNR  111 (571)
T ss_dssp             TTCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCCCCCTTCCEEECCSSC
T ss_pred             ccCCccccccchhhhcccccc-CCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccccccCCCCEEEccCCC
Confidence            355677     69999 6754 478999999999886 776 55  367888888888887 455222         667


Q ss_pred             ccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc--cccchhhhccccc
Q 047948          107 LSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI--FWMVQSLVLLAIW  169 (171)
Q Consensus       107 l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~--~~~~~~L~~L~l~  169 (171)
                      +++ +|. +..  +|+.|++++|++++ +|.   .+++|++|++++|+|+  ...+++|+.|++.
T Consensus       112 l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls  168 (571)
T 3cvr_A          112 LST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVR  168 (571)
T ss_dssp             CSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             CCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECC
Confidence            776 665 544  77777777777774 665   4566777777777666  2233455555553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.18  E-value=3.1e-11  Score=89.89  Aligned_cols=95  Identities=16%  Similarity=0.126  Sum_probs=48.8

Q ss_pred             CEEEEEcCCCc-cceecCCCCCCCCCCCcEEEeec-Ccccccccccc------------cccccccCCccccCCcCCC--
Q 047948           59 RVVGINLTSMS-LNGTLLEFPFSSFPHLAYLVLYN-NELFYIILPQI------------TNKLSGQIPSEIGLLTHLT--  122 (171)
Q Consensus        59 ~v~~L~l~~~~-l~~~~p~~~l~~L~~L~~L~l~~-n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~--  122 (171)
                      +++.|++++|. ++...+. .|..++.|++|++++ |.+++..+..+            +|.+++ +|. +..+++|+  
T Consensus        56 ~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           56 NISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF  132 (239)
T ss_dssp             TCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred             CCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence            56666666665 5533333 556666666666665 66654433332            444443 333 44445554  


Q ss_pred             -EEecccC-cccccCChhhhCccccC-ceeccccccc
Q 047948          123 -VLHISRN-QLNGSIPQEVGQLTFLN-HLILDLIFLI  156 (171)
Q Consensus       123 -~L~ls~N-~l~g~~P~~~~~l~~L~-~L~Ls~N~l~  156 (171)
                       +|++++| ++++..+..|.++++|+ +|++++|+++
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence             5555555 55533333455555555 5555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.17  E-value=5.6e-11  Score=103.37  Aligned_cols=109  Identities=18%  Similarity=0.102  Sum_probs=91.5

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++.|++++|.+.+..+. .+..++.|+.|++++|.+.+..|..+            .|.+.+..|..+..+++|+.|++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             CCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CccEEECCCCcccccChh-hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            689999999999977777 89999999999999999998777655            68888777888899999999999


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc-cccchhhhcccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI-FWMVQSLVLLAI  168 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-~~~~~~L~~L~l  168 (171)
                      ++|.+++..+..|..+++|++|++++|.++ ...+++|+.|++
T Consensus       346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l  388 (844)
T 3j0a_A          346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL  388 (844)
T ss_dssp             CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEE
T ss_pred             CCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhcc
Confidence            999998777777888999999999999887 334566666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.16  E-value=9.4e-12  Score=96.60  Aligned_cols=108  Identities=24%  Similarity=0.244  Sum_probs=70.0

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccc-cc---------------------------cccccc
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILP-QI---------------------------TNKLSG  109 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~-~~---------------------------~n~l~g  109 (171)
                      .+++.|++++|.+++..+   +..++.|++|++++|.+++..+. .+                           .|++++
T Consensus        58 ~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~  134 (317)
T 3o53_A           58 TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM  134 (317)
T ss_dssp             TTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCS
T ss_pred             CcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCC
Confidence            479999999999986543   77888999999999988764321 11                           455555


Q ss_pred             cCCccccCCcCCCEEecccCcccccCChhhh-CccccCceeccccccc----cccchhhhcccc
Q 047948          110 QIPSEIGLLTHLTVLHISRNQLNGSIPQEVG-QLTFLNHLILDLIFLI----FWMVQSLVLLAI  168 (171)
Q Consensus       110 ~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~-~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l  168 (171)
                      ..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|+++    ...+++|++|++
T Consensus       135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~L  198 (317)
T 3o53_A          135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL  198 (317)
T ss_dssp             GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred             ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEEC
Confidence            4455566666677777777776655555543 5566666666666665    222455555555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.15  E-value=5.4e-11  Score=83.93  Aligned_cols=87  Identities=18%  Similarity=0.036  Sum_probs=72.6

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC-
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP-  136 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P-  136 (171)
                      .+++.|++++|.+.+.+|. .+..++.|+.|++++|.+++..           .+..+..+++|+.|++++|.+++..+ 
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~l~~l~~L~~L~l~~N~l~~~~~~  138 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDM-LAEKLPNLTHLNLSGNKLKDIS-----------TLEPLKKLECLKSLDLFNCEVTNLNDY  138 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCH-HHHHCTTCCEEECBSSSCCSSG-----------GGGGGSSCSCCCEEECCSSGGGTSTTH
T ss_pred             CCCCEEECcCCcCchHHHH-HHhhCCCCCEEeccCCccCcch-----------hHHHHhcCCCCCEEEeeCCcCcchHHH
Confidence            3799999999999977766 6667999999999999987321           12568899999999999999995444 


Q ss_pred             --hhhhCccccCceeccccccc
Q 047948          137 --QEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       137 --~~~~~l~~L~~L~Ls~N~l~  156 (171)
                        ..+..+++|++|++++|.+.
T Consensus       139 ~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          139 RESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHHHTTCSSCCEETTEETTSC
T ss_pred             HHHHHHhCccCcEecCCCCChh
Confidence              37899999999999999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.13  E-value=7.1e-11  Score=84.13  Aligned_cols=94  Identities=20%  Similarity=0.209  Sum_probs=75.5

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCC-CCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFP-HLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~-~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      +++.|++++|.++ .++.  +..+. .|+.|++++|.+++             + ..+..+++|++|++++|++++..|.
T Consensus        20 ~L~~L~l~~n~l~-~i~~--~~~~~~~L~~L~Ls~N~l~~-------------~-~~l~~l~~L~~L~Ls~N~l~~~~~~   82 (176)
T 1a9n_A           20 RDRELDLRGYKIP-VIEN--LGATLDQFDAIDFSDNEIRK-------------L-DGFPLLRRLKTLLVNNNRICRIGEG   82 (176)
T ss_dssp             SCEEEECTTSCCC-SCCC--GGGGTTCCSEEECCSSCCCE-------------E-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred             CceEEEeeCCCCc-hhHH--hhhcCCCCCEEECCCCCCCc-------------c-cccccCCCCCEEECCCCcccccCcc
Confidence            6899999999998 4544  55555 99999999999873             2 4678899999999999999954444


Q ss_pred             hhhCccccCceeccccccc-------cccchhhhccccc
Q 047948          138 EVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAIW  169 (171)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~  169 (171)
                      .+..+++|++|++++|+++       ...+++|+.|++.
T Consensus        83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence            5589999999999999987       2234567777774

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.13  E-value=4.4e-11  Score=100.30  Aligned_cols=110  Identities=20%  Similarity=0.110  Sum_probs=90.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++.+++.++.+. .+|...+..++.|+.|++++|.+.+..|..+            +|.+.+..|..|+.+++|++|++
T Consensus        52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            5688889999887 4555257789999999999999998777665            78899888888899999999999


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~  169 (171)
                      ++|.+++..+..|.++++|++|+|++|.++      +..+++|+.|++.
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence            999999444445689999999999999987      3445678888874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.08  E-value=1.9e-10  Score=87.24  Aligned_cols=105  Identities=18%  Similarity=0.185  Sum_probs=75.6

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccc---cc------cccccccCCccccCCcCCCEEeccc
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILP---QI------TNKLSGQIPSEIGLLTHLTVLHISR  128 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~---~~------~n~l~g~~p~~~~~l~~L~~L~ls~  128 (171)
                      .+++.|++++|.+++. ++  +..++.|+.|++++|++++..+.   .+      +|++++.  +.+..+++|+.|++++
T Consensus        63 ~~L~~L~L~~N~i~~~-~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           63 TNLKELHLSHNQISDL-SP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRN  137 (263)
T ss_dssp             TTCCEEECCSSCCCCC-GG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTT
T ss_pred             CCCCEEECCCCccCCC-hh--hccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCCC--hhhcCcccccEEECCC
Confidence            3788999999988743 33  77888899999999888753211   11      5666653  3577888888888888


Q ss_pred             CcccccCChhhhCccccCceeccccccc----cccchhhhccccc
Q 047948          129 NQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW  169 (171)
Q Consensus       129 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~  169 (171)
                      |++++ +| .+..+++|++|++++|+++    ...+++|+.|++.
T Consensus       138 N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          138 NKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLT  180 (263)
T ss_dssp             SCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEE
T ss_pred             CcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCC
Confidence            88884 44 5778888888888888887    3445566666663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.06  E-value=1.9e-10  Score=88.36  Aligned_cols=61  Identities=26%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc----cccchhhhcccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAI  168 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l  168 (171)
                      .|++++.  ..+..+++|+.|++++|++++..|  +..+++|++|++++|.++    ...+++|+.|++
T Consensus       143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l  207 (291)
T 1h6t_A          143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL  207 (291)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred             CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEEC
Confidence            3444432  345555666666666666653322  555666666666666655    233444555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.05  E-value=4.4e-10  Score=86.33  Aligned_cols=103  Identities=19%  Similarity=0.208  Sum_probs=76.4

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|++++|.+++. +.  +..++.|+.|++++|.+.+. |. +            .|++.+.  +.+..+++|+.|+
T Consensus        68 ~~L~~L~L~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~  140 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDI-KP--LANLKNLGWLFLDENKVKDL-SS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY  140 (291)
T ss_dssp             TTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCG-GG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEE
T ss_pred             CCCCEEEccCCccCCC-cc--cccCCCCCEEECCCCcCCCC-hh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEE
Confidence            3789999999998853 33  78889999999999988753 21 2            5666653  4577788888888


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc----cccchhhhccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW  169 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~  169 (171)
                      +++|++++.  +.+..+++|++|++++|+++    ...+++|+.|++.
T Consensus       141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~  186 (291)
T 1h6t_A          141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS  186 (291)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             ccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECC
Confidence            888888853  56778888888888888887    3445677777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.05  E-value=4.1e-10  Score=85.32  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=81.1

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc----c------cccccccCCccccCCcCCCEEecc
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ----I------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~----~------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      .+++.|++++|.++ .++  .+..++.|+.|++++|.+++..+-.    +      +|++++ +|. +.. ++|+.|+++
T Consensus        41 ~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~  114 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLD  114 (263)
T ss_dssp             TTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECC
T ss_pred             CcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEcc
Confidence            37899999999988 455  4888999999999999998654411    0      677765 333 223 889999999


Q ss_pred             cCcccccCChhhhCccccCceeccccccc----cccchhhhcccccc
Q 047948          128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIWP  170 (171)
Q Consensus       128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~~  170 (171)
                      +|++++ +| .+..+++|++|++++|+++    ...+++|+.|++..
T Consensus       115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A          115 NNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHG  159 (263)
T ss_dssp             SSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTT
T ss_pred             CCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCC
Confidence            999985 44 5889999999999999998    45567888888753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.04  E-value=3.7e-10  Score=88.08  Aligned_cols=107  Identities=19%  Similarity=0.252  Sum_probs=78.5

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc-----c------cccccccCCccccCCcCCCEEecc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ-----I------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~-----~------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      +++.|++++|.+++. +.  +..++.|+.|++++|.++.. +..     +      +|.+.+.  +.+..+++|+.|+++
T Consensus       222 ~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          222 RLNSLKIGNNKITDL-SP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN  295 (347)
T ss_dssp             TCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             cCCEEEccCCccCCC-cc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence            567777777777632 22  66777788888887777653 211     1      5666653  457788999999999


Q ss_pred             cCcccccCChhhhCccccCceeccccccc----cccchhhhccccccC
Q 047948          128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIWPT  171 (171)
Q Consensus       128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~~~  171 (171)
                      +|.+++..|..+..+++|++|++++|+++    ...+++|++|++.+|
T Consensus       296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ  343 (347)
T ss_dssp             SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred             CCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence            99999888888899999999999999988    345678888887643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.04  E-value=3.9e-10  Score=87.23  Aligned_cols=40  Identities=25%  Similarity=0.265  Sum_probs=16.7

Q ss_pred             ccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          115 IGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       115 ~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +..+++|+.|++++|++++ ++. +..+++|++|++++|+++
T Consensus       147 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          147 LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence            3344444444444444442 222 344444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.03  E-value=6.1e-10  Score=90.72  Aligned_cols=103  Identities=24%  Similarity=0.284  Sum_probs=65.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc---------cccccccCCccccCCcCCCEEecccC
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TNKLSGQIPSEIGLLTHLTVLHISRN  129 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n~l~g~~p~~~~~l~~L~~L~ls~N  129 (171)
                      ++++|++++|.+++ +|  ++..++.|++|++++|.+++ +|..+         .|++.+ +| .++.+++|+.|++++|
T Consensus       132 ~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N  205 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN  205 (454)
T ss_dssp             TCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC
Confidence            67888888888875 55  48888889999999888876 44332         566665 44 4666666666666665


Q ss_pred             cccc-------------------cCChhhhCccccCceecccccccc--ccchhhhcccc
Q 047948          130 QLNG-------------------SIPQEVGQLTFLNHLILDLIFLIF--WMVQSLVLLAI  168 (171)
Q Consensus       130 ~l~g-------------------~~P~~~~~l~~L~~L~Ls~N~l~~--~~~~~L~~L~l  168 (171)
                      ++++                   .+| .++.+++|++|++++|++++  ..+++|+.|++
T Consensus       206 ~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l  264 (454)
T 1jl5_A          206 SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV  264 (454)
T ss_dssp             CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEEC
T ss_pred             cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEEC
Confidence            5553                   344 25556666666666666652  33345555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.03  E-value=7.3e-11  Score=91.65  Aligned_cols=96  Identities=16%  Similarity=0.097  Sum_probs=61.7

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccc-ccccc------------cccccccCCccccCCcCCCEEe
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI-ILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~-~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      +++.+++.+|.+.+..+.  +..++.|++|++++|.+.+. +|..+            +|.+.+..|..++.+++|++|+
T Consensus        71 ~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             cceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            567777777777655443  56678888888888877654 43322            4555555566666667777777


Q ss_pred             cccC-ccccc-CChhhhCccccCceecccc-ccc
Q 047948          126 ISRN-QLNGS-IPQEVGQLTFLNHLILDLI-FLI  156 (171)
Q Consensus       126 ls~N-~l~g~-~P~~~~~l~~L~~L~Ls~N-~l~  156 (171)
                      +++| .+++. +|..+..+++|++|++++| .++
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            7776 56542 5555666666666666666 555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.02  E-value=4.9e-10  Score=94.41  Aligned_cols=102  Identities=23%  Similarity=0.281  Sum_probs=60.7

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc-----c------cccccccCCccccCCcCCCEEecc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ-----I------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~-----~------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      +++.|+|++|.+.+ ++  .+..++.|+.|++++|.+.+. +..     +      .|.+++.  ..+..+++|+.|+|+
T Consensus        88 ~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           88 NLGWLFLDENKIKD-LS--SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  161 (605)
T ss_dssp             TCCEEECCSSCCCC-CT--TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred             CCCEEECcCCCCCC-Ch--hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence            45556666665553 22  366666666666666666542 110     0      4555543  456667777777777


Q ss_pred             cCcccccCChhhhCccccCceeccccccc----cccchhhhcccc
Q 047948          128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAI  168 (171)
Q Consensus       128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l  168 (171)
                      +|++++..|  +..+++|++|+|++|+|+    ...+++|+.|+|
T Consensus       162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          162 DNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL  204 (605)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred             CCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence            777775444  667777777777777766    334455666655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.02  E-value=3.4e-10  Score=87.62  Aligned_cols=104  Identities=19%  Similarity=0.269  Sum_probs=68.1

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc----c------cccccccCCccccCCcCCCEEeccc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ----I------TNKLSGQIPSEIGLLTHLTVLHISR  128 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~----~------~n~l~g~~p~~~~~l~~L~~L~ls~  128 (171)
                      +++.|++++|.+++ ++  .+..++.|+.|++++|.+++..+-.    +      .|++++. +. +..+++|+.|++++
T Consensus       108 ~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          108 SIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADD  182 (308)
T ss_dssp             TCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCC
Confidence            45555555555543 22  2556666666666666665433210    1      5666653 33 78889999999999


Q ss_pred             CcccccCChhhhCccccCceeccccccc----cccchhhhccccc
Q 047948          129 NQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW  169 (171)
Q Consensus       129 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~  169 (171)
                      |++++ ++. +..+++|++|++++|+++    ...+++|+.|++.
T Consensus       183 n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~  225 (308)
T 1h6u_A          183 NKISD-ISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT  225 (308)
T ss_dssp             SCCCC-CGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred             CccCc-Chh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEcc
Confidence            99984 444 788889999999999887    3445677777663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.95  E-value=6.4e-10  Score=90.58  Aligned_cols=81  Identities=30%  Similarity=0.346  Sum_probs=39.6

Q ss_pred             CCCcEEEeecCcccccccccc---------cccccccCCccccCCcCCCEEecccCcccc--cCChhhhCc---------
Q 047948           83 PHLAYLVLYNNELFYIILPQI---------TNKLSGQIPSEIGLLTHLTVLHISRNQLNG--SIPQEVGQL---------  142 (171)
Q Consensus        83 ~~L~~L~l~~n~l~g~~p~~~---------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g--~~P~~~~~l---------  142 (171)
                      +.|+.|++++|++++ +|..+         +|+++ .+|.   .+++|++|++++|++++  .+|..+..+         
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i  391 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV  391 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----
T ss_pred             CcCCEEECCCCcccc-ccccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccc
Confidence            467777777777765 44332         56666 3555   46889999999999998  788888877         


Q ss_pred             ----cccCceecccccccc--ccchhhhcccc
Q 047948          143 ----TFLNHLILDLIFLIF--WMVQSLVLLAI  168 (171)
Q Consensus       143 ----~~L~~L~Ls~N~l~~--~~~~~L~~L~l  168 (171)
                          ++|++|++++|++++  .++++++.|.+
T Consensus       392 ~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~  423 (454)
T 1jl5_A          392 PELPQNLKQLHVETNPLREFPDIPESVEDLRM  423 (454)
T ss_dssp             --------------------------------
T ss_pred             ccccCcCCEEECCCCcCCccccchhhHhheeC
Confidence                789999999999985  78888888776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.93  E-value=1.8e-09  Score=87.99  Aligned_cols=100  Identities=27%  Similarity=0.233  Sum_probs=47.1

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc---------cccccccCCccccCCcCCCEEecccC
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TNKLSGQIPSEIGLLTHLTVLHISRN  129 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n~l~g~~p~~~~~l~~L~~L~ls~N  129 (171)
                      ++++|++++|.+++.    ++..++.|++|++++|.+++.--..+         .|++++ +|  ++.+++|++|++++|
T Consensus        65 ~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           65 GLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARN  137 (457)
T ss_dssp             TCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTS
T ss_pred             CCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCC
Confidence            456666666665542    24555666666666666554210000         344443 22  444455555555555


Q ss_pred             cccccCChhhhCccccCceeccccccc----cccchhhhcccc
Q 047948          130 QLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAI  168 (171)
Q Consensus       130 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l  168 (171)
                      ++++ +|  ++.+++|++|++++|+..    ...+++|+.|++
T Consensus       138 ~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l  177 (457)
T 3bz5_A          138 TLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC  177 (457)
T ss_dssp             CCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred             ccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence            5553 22  444455555555555222    233445555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.93  E-value=2e-11  Score=88.58  Aligned_cols=92  Identities=22%  Similarity=0.227  Sum_probs=64.9

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|++++|.+++ +|  .+..++.|+.|++++|.+. .+|..+            +|++++ +| .+..+++|++|+
T Consensus        48 ~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            378999999999886 55  5888999999999999987 344332            555554 33 466667777777


Q ss_pred             cccCcccccCC--hhhhCccccCceeccccccc
Q 047948          126 ISRNQLNGSIP--QEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       126 ls~N~l~g~~P--~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +++|++++ +|  ..+..+++|++|++++|++.
T Consensus       122 l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          122 MSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ESEEECCC-HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCCCcCCc-hhHHHHHhcCCCCCEEEecCCccc
Confidence            77777763 33  35666777777777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.93  E-value=1.8e-09  Score=91.01  Aligned_cols=103  Identities=19%  Similarity=0.211  Sum_probs=80.5

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|+|++|.+.+.. +  +..++.|+.|++++|.+.+. | .+            .|.+.+.  +.+..+++|+.|+
T Consensus        65 ~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  137 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIK-P--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY  137 (605)
T ss_dssp             TTCCEEECTTSCCCCCG-G--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEE
T ss_pred             CCCCEEEeeCCCCCCCh-h--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEE
Confidence            47999999999998543 3  78899999999999998853 2 22            6777652  4578888899999


Q ss_pred             cccCcccccCChhhhCccccCceeccccccc----cccchhhhccccc
Q 047948          126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW  169 (171)
Q Consensus       126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~  169 (171)
                      |++|++++.  ..+..+++|++|+|++|.+.    ...+++|+.|+|.
T Consensus       138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS  183 (605)
T ss_dssp             CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             CCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECc
Confidence            999988854  56888889999999999887    3456677777774

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.92  E-value=4.3e-11  Score=92.99  Aligned_cols=120  Identities=11%  Similarity=0.046  Sum_probs=93.1

Q ss_pred             CCCcccceeeCCCCCEEEEEcCCCccceecCCCCCCCC--CCCcEEEeecCcccccccccc-----------ccccccc-
Q 047948           45 SPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSF--PHLAYLVLYNNELFYIILPQI-----------TNKLSGQ-  110 (171)
Q Consensus        45 ~~c~w~gv~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L--~~L~~L~l~~n~l~g~~p~~~-----------~n~l~g~-  110 (171)
                      -+..|.++.|+. ..++.++++++.+..   . .+..+  +.++.|++++|.+.+..+..+           +|.+.+. 
T Consensus        35 vc~~W~~~~~~~-~~~~~l~l~~~~~~~---~-~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~  109 (336)
T 2ast_B           35 VCKRWYRLASDE-SLWQTLDLTGKNLHP---D-VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST  109 (336)
T ss_dssp             SCHHHHHHHTCS-TTSSEEECTTCBCCH---H-HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHH
T ss_pred             HHHHHHHHhcCc-hhheeeccccccCCH---H-HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHH
Confidence            344699998763 357899999988762   2 45555  789999999999988766533           5667665 


Q ss_pred             CCccccCCcCCCEEecccCcccccCChhhhCccccCceecccc-ccc-------cccchhhhccccc
Q 047948          111 IPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI-FLI-------FWMVQSLVLLAIW  169 (171)
Q Consensus       111 ~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N-~l~-------~~~~~~L~~L~l~  169 (171)
                      +|..+..+++|++|++++|.+++..|..+..+++|++|++++| .++       ...+++|++|++.
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~  176 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS  176 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence            7777888899999999999999888888888999999999998 566       2345677777774

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.91  E-value=1.5e-09  Score=88.49  Aligned_cols=37  Identities=16%  Similarity=0.167  Sum_probs=22.7

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII   99 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~   99 (171)
                      +++.|++++|.+++ +|   +..++.|+.|++++|.+++..
T Consensus       213 ~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          213 QLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             TCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC
T ss_pred             CCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC
Confidence            56666666666664 32   456666666676666666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.91  E-value=1.9e-09  Score=87.60  Aligned_cols=17  Identities=24%  Similarity=0.104  Sum_probs=6.7

Q ss_pred             hCccccCceeccccccc
Q 047948          140 GQLTFLNHLILDLIFLI  156 (171)
Q Consensus       140 ~~l~~L~~L~Ls~N~l~  156 (171)
                      ..+++|++|++++|+++
T Consensus       350 ~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          350 ANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             TTCTTCCEEECCSSCCC
T ss_pred             ccCCCCCEEeCCCCccC
Confidence            33334444444444333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.90  E-value=1.3e-09  Score=91.18  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             CEEecccCcccccCChhhhCccccCceeccccccccccchhh
Q 047948          122 TVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSL  163 (171)
Q Consensus       122 ~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L  163 (171)
                      +.|++++|+++ .+|..+..+++|++|+|++|++++.++..|
T Consensus       210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            55555555555 455555555555555555555554444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.87  E-value=3e-09  Score=86.49  Aligned_cols=39  Identities=28%  Similarity=0.253  Sum_probs=16.8

Q ss_pred             cCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          116 GLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       116 ~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ..+++|+.|++++|++++..|  +..+++|++|++++|+++
T Consensus       306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence            344444444444444443322  334444444444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.87  E-value=2.3e-11  Score=88.30  Aligned_cols=104  Identities=21%  Similarity=0.221  Sum_probs=74.4

Q ss_pred             EEEEEcCCCccceecC------CCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCC
Q 047948           60 VVGINLTSMSLNGTLL------EFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHL  121 (171)
Q Consensus        60 v~~L~l~~~~l~~~~p------~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L  121 (171)
                      ++.+++..+.+.|.+|      . .+..++.|++|++++|.+.+ +| .+            .|.+. .+|..+..+++|
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             ccCcchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            3444444444444433      3 57788999999999999986 55 43            56666 567767777888


Q ss_pred             CEEecccCcccccCChhhhCccccCceeccccccc-------cccchhhhccccc
Q 047948          122 TVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAIW  169 (171)
Q Consensus       122 ~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~  169 (171)
                      +.|++++|++++ +| .+..+++|++|++++|+++       ...+++|++|++.
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence            888888888884 55 5788888888888888887       2345567777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.86  E-value=2.6e-09  Score=89.40  Aligned_cols=89  Identities=17%  Similarity=0.172  Sum_probs=75.5

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccC-CccccCCcCCCEE
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQI-PSEIGLLTHLTVL  124 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~-p~~~~~l~~L~~L  124 (171)
                      .+++.|+|++|.++ .+|. .+..++.|+.|++++|.+++ +| .+            +|++++.. |..++.+++|+.|
T Consensus       463 ~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          463 LLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             TTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             ccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            37899999999999 8888 89999999999999999997 56 44            78999887 9999999999999


Q ss_pred             ecccCcccccCChh---hhCccccCceec
Q 047948          125 HISRNQLNGSIPQE---VGQLTFLNHLIL  150 (171)
Q Consensus       125 ~ls~N~l~g~~P~~---~~~l~~L~~L~L  150 (171)
                      ++++|.+++..|..   +..+++|++|++
T Consensus       539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          539 NLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999999665532   334788888864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.85  E-value=2.3e-09  Score=83.62  Aligned_cols=93  Identities=18%  Similarity=0.263  Sum_probs=75.8

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc-----c------cccccccCCccccCCcCCCEEec
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ-----I------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~-----~------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      .+++.|++++|.+++ + + .+..++.|+.|++++|.+.+. +..     +      +|.+.+..|..+..+++|+.|++
T Consensus       243 ~~L~~L~l~~n~l~~-~-~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          243 SQLTWLEIGTNQISD-I-N-AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL  318 (347)
T ss_dssp             TTCCEEECCSSCCCC-C-G-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred             CCCCEEECCCCccCC-C-h-hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence            478999999999875 3 3 588899999999999988864 211     1      78888888888999999999999


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|.+++..|  +..+++|++|++++|.|+
T Consensus       319 ~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          319 SQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCccccccC--hhhhhccceeehhhhccc
Confidence            9999996555  889999999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.82  E-value=3.7e-10  Score=89.66  Aligned_cols=46  Identities=13%  Similarity=0.083  Sum_probs=19.9

Q ss_pred             CCccccCCcCCCEEecccCccccc----CChhhh--CccccCceeccccccc
Q 047948          111 IPSEIGLLTHLTVLHISRNQLNGS----IPQEVG--QLTFLNHLILDLIFLI  156 (171)
Q Consensus       111 ~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~--~l~~L~~L~Ls~N~l~  156 (171)
                      +|..+..+++|+.|++++|.+++.    +|..+.  .+++|++|+|++|.++
T Consensus       236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            334444444444444444444433    233332  2444444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.82  E-value=9e-10  Score=87.38  Aligned_cols=35  Identities=20%  Similarity=0.106  Sum_probs=24.7

Q ss_pred             CEEEEEcCCCcccee----cCCCCCCCCCCCcEEEeecCc
Q 047948           59 RVVGINLTSMSLNGT----LLEFPFSSFPHLAYLVLYNNE   94 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~----~p~~~l~~L~~L~~L~l~~n~   94 (171)
                      +++.|+|++|.+...    ++. .+..++.|+.|++++|.
T Consensus        33 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~~~   71 (386)
T 2ca6_A           33 SVKEIVLSGNTIGTEAARWLSE-NIASKKDLEIAEFSDIF   71 (386)
T ss_dssp             CCCEEECTTSEECHHHHHHHHH-TTTTCTTCCEEECCSCC
T ss_pred             CccEEECCCCCCCHHHHHHHHH-HHHhCCCccEEeCcccc
Confidence            578888888877654    223 36677888888888753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.81  E-value=7e-10  Score=87.48  Aligned_cols=97  Identities=25%  Similarity=0.184  Sum_probs=60.1

Q ss_pred             CEEEEEcCCCccceecCCCCCCCC-----CCCcEEEeecCcccccccc-----------cc------cccccccCCcccc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSF-----PHLAYLVLYNNELFYIILP-----------QI------TNKLSGQIPSEIG  116 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L-----~~L~~L~l~~n~l~g~~p~-----------~~------~n~l~g~~p~~~~  116 (171)
                      ++++|++++|.+.+..+. .+..+     +.|++|++++|.+++..+.           .+      .|++++..+..+.
T Consensus        52 ~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence            678888888887755444 44443     7788888888887754432           12      5566554443332


Q ss_pred             ----C-CcCCCEEecccCcccccCC----hhhhCcc-ccCceeccccccc
Q 047948          117 ----L-LTHLTVLHISRNQLNGSIP----QEVGQLT-FLNHLILDLIFLI  156 (171)
Q Consensus       117 ----~-l~~L~~L~ls~N~l~g~~P----~~~~~l~-~L~~L~Ls~N~l~  156 (171)
                          . .++|++|++++|++++.-+    ..+..++ +|++|+|++|+++
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence                2 2577777777777774333    3334444 6777777777776

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.81  E-value=9.5e-10  Score=92.97  Aligned_cols=115  Identities=22%  Similarity=0.160  Sum_probs=75.4

Q ss_pred             CCCCCCcccceeeC------C-CCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc---------cc
Q 047948           42 TKISPCAWSGIHCN------H-AGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TN  105 (171)
Q Consensus        42 ~~~~~c~w~gv~c~------~-~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n  105 (171)
                      ...++|.|.|..|.      + ...++.|+++++.++ .+|. .+.  +.|+.|++++|.++. +|..+         +|
T Consensus        17 ~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N   91 (622)
T 3g06_A           17 RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGN   91 (622)
T ss_dssp             HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCSC-CCCCCTTCCEEEECSC
T ss_pred             hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCC
Confidence            45677888664321      1 125889999999988 7776 554  789999999998873 44332         56


Q ss_pred             cccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc--cccchhhhccccc
Q 047948          106 KLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI--FWMVQSLVLLAIW  169 (171)
Q Consensus       106 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~--~~~~~~L~~L~l~  169 (171)
                      ++++ +|.   .+++|++|++++|.++ .+|.   .+++|++|++++|+++  ...+++|+.|++.
T Consensus        92 ~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls  149 (622)
T 3g06_A           92 QLTS-LPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVS  149 (622)
T ss_dssp             CCSC-CCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             cCCc-CCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECc
Confidence            6653 554   5678888888888887 4555   4456666666666665  2223556666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.76  E-value=9.7e-09  Score=86.79  Aligned_cols=76  Identities=26%  Similarity=0.262  Sum_probs=55.9

Q ss_pred             CCCcEEEeecCcccccccccc---------cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccc
Q 047948           83 PHLAYLVLYNNELFYIILPQI---------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI  153 (171)
Q Consensus        83 ~~L~~L~l~~n~l~g~~p~~~---------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N  153 (171)
                      ++|+.|++++|.+++ +|..+         +|+++ .+|.   .+++|+.|++++|+++ .+|..+.++++|++|+|++|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred             CCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence            567777777777765 33222         56666 3554   5678889999999998 88888889999999999999


Q ss_pred             ccccccchhhh
Q 047948          154 FLIFWMVQSLV  164 (171)
Q Consensus       154 ~l~~~~~~~L~  164 (171)
                      ++++..+..+.
T Consensus       295 ~l~~~~~~~l~  305 (622)
T 3g06_A          295 PLSERTLQALR  305 (622)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCCcCHHHHH
Confidence            98866555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.74  E-value=1.7e-09  Score=85.27  Aligned_cols=110  Identities=21%  Similarity=0.177  Sum_probs=77.6

Q ss_pred             CEEEEEcCCCccceecC----CCCCCCCC-CCcEEEeecCcccccccc-----------cc------cccccccCCcccc
Q 047948           59 RVVGINLTSMSLNGTLL----EFPFSSFP-HLAYLVLYNNELFYIILP-----------QI------TNKLSGQIPSEIG  116 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p----~~~l~~L~-~L~~L~l~~n~l~g~~p~-----------~~------~n~l~g~~p~~~~  116 (171)
                      +++.|++++|.+++..+    . .+..++ .|++|++++|.+.+..+.           .+      +|.+++..+..++
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            59999999999986544    4 577788 899999999999875442           22      6777666555433


Q ss_pred             ----CC-cCCCEEecccCcccccCChhhhC-----ccccCceecccccccc-----------ccchhhhccccc
Q 047948          117 ----LL-THLTVLHISRNQLNGSIPQEVGQ-----LTFLNHLILDLIFLIF-----------WMVQSLVLLAIW  169 (171)
Q Consensus       117 ----~l-~~L~~L~ls~N~l~g~~P~~~~~-----l~~L~~L~Ls~N~l~~-----------~~~~~L~~L~l~  169 (171)
                          .+ ++|+.|++++|++++..+..+..     .++|++|++++|.++.           ..+.+|++|++.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls  175 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR  175 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence                33 78888888888888655554433     2578888888888871           112377777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.60  E-value=1.6e-09  Score=87.43  Aligned_cols=16  Identities=38%  Similarity=0.198  Sum_probs=7.4

Q ss_pred             CCCCCcEEEeecCccc
Q 047948           81 SFPHLAYLVLYNNELF   96 (171)
Q Consensus        81 ~L~~L~~L~l~~n~l~   96 (171)
                      .++.|+.|++++|.+.
T Consensus       282 ~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          282 AKESLKELSLAGNELG  297 (461)
T ss_dssp             HCTTCCEEECTTCCCH
T ss_pred             hCCCcceEECCCCCCc
Confidence            3444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.59  E-value=6.5e-08  Score=75.86  Aligned_cols=91  Identities=20%  Similarity=0.131  Sum_probs=52.1

Q ss_pred             EEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc--------------------------------------c
Q 047948           63 INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI--------------------------------------T  104 (171)
Q Consensus        63 L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~--------------------------------------~  104 (171)
                      +.+..|++....+. .|..++.|++|++++|++....+..+                                      .
T Consensus        85 l~~~~N~l~~l~~~-~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           85 RIEKANNLLYINPE-AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEETTCCEECTT-SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hcccCCcccccCch-hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            34444555533344 56677777777777777764433222                                      3


Q ss_pred             ccccccCCccccCCcCCCEEeccc-CcccccCCh-hhhCccccCceeccccccc
Q 047948          105 NKLSGQIPSEIGLLTHLTVLHISR-NQLNGSIPQ-EVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       105 n~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~P~-~~~~l~~L~~L~Ls~N~l~  156 (171)
                      |+++ .+|.......+|+.+++++ |.++ .+|. .|..+++|++|++++|+|+
T Consensus       164 N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred             cccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence            3333 2333334445666666654 3333 5554 4577778888888888776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.55  E-value=6.1e-09  Score=84.01  Aligned_cols=38  Identities=26%  Similarity=0.363  Sum_probs=27.7

Q ss_pred             CEEEEEcCCCccce----ecCCCCCCCCCCCcEEEeecCcccc
Q 047948           59 RVVGINLTSMSLNG----TLLEFPFSSFPHLAYLVLYNNELFY   97 (171)
Q Consensus        59 ~v~~L~l~~~~l~~----~~p~~~l~~L~~L~~L~l~~n~l~g   97 (171)
                      ++++|++++|.++.    .++. .+..++.|++|++++|.+..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCch
Confidence            57888888887763    4455 67777788888888887764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.35  E-value=2.5e-07  Score=70.43  Aligned_cols=65  Identities=29%  Similarity=0.372  Sum_probs=45.9

Q ss_pred             CCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhhCcc--ccCceecccccccc
Q 047948           81 SFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLT--FLNHLILDLIFLIF  157 (171)
Q Consensus        81 ~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~--~L~~L~Ls~N~l~~  157 (171)
                      .++.|+.|+|++|++++..          .+|..+..+++|+.|+|++|++++.  ..+..++  +|++|+|++|.+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~----------~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLD----------DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCG----------GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCc----------cchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            3567778888877776421          2445566788888889988888854  3344444  78888888888874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.33  E-value=7.4e-08  Score=76.55  Aligned_cols=43  Identities=14%  Similarity=0.043  Sum_probs=25.1

Q ss_pred             cccCCcCCCEEecccCccccc----CChhhhCccccCceeccccccc
Q 047948          114 EIGLLTHLTVLHISRNQLNGS----IPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       114 ~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .+...+.|++|+|++|.++..    ++..+...++|++|+|++|.++
T Consensus       178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            334556666666666666532    2344455556666666666665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.26  E-value=3.8e-08  Score=78.23  Aligned_cols=103  Identities=21%  Similarity=0.094  Sum_probs=62.4

Q ss_pred             CEEEEEcCCCccceecCCCCC-CCCCCCcEEEeecCcccccccccccccccccCCccc-cCCcCCCEEecccCcccc---
Q 047948           59 RVVGINLTSMSLNGTLLEFPF-SSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEI-GLLTHLTVLHISRNQLNG---  133 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l-~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~-~~l~~L~~L~ls~N~l~g---  133 (171)
                      +++.|+|++|.++..... .+ ..++.|+.|++++|.++..-..        .+...+ ...+.|+.|++++|.++.   
T Consensus       102 ~L~~L~Ls~n~l~~~~~~-~l~~~L~~L~~L~Ls~n~l~~~~~~--------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~  172 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLR-TLLPVFLRARKLGLQLNSLGPEACK--------DLRDLLLHDQCQITTLRLSNNPLTAAGV  172 (372)
T ss_dssp             CEEEEECTTCCCCHHHHH-HTHHHHHTEEEEECCSSCCCHHHHH--------HHHHHHHSTTCCCCEEECCSSCCHHHHH
T ss_pred             CceEEEecCCCCCHHHHH-HHHHHHHhccHhhcCCCCCCHHHHH--------HHHHHHHhcCCccceeeCCCCCCChHHH
Confidence            466666666655432211 11 1234556666666655421110        011112 245789999999999975   


Q ss_pred             -cCChhhhCccccCceeccccccc----------cccchhhhcccccc
Q 047948          134 -SIPQEVGQLTFLNHLILDLIFLI----------FWMVQSLVLLAIWP  170 (171)
Q Consensus       134 -~~P~~~~~l~~L~~L~Ls~N~l~----------~~~~~~L~~L~l~~  170 (171)
                       .++..+..+++|++|+|++|.++          ...+++|++|++..
T Consensus       173 ~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred             HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence             34555677899999999999997          13455788888853

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=4.8e-07  Score=68.84  Aligned_cols=78  Identities=23%  Similarity=0.226  Sum_probs=60.8

Q ss_pred             CEEEEEcCCCccce--ecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948           59 RVVGINLTSMSLNG--TLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP  136 (171)
Q Consensus        59 ~v~~L~l~~~~l~~--~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P  136 (171)
                      +++.|+|++|.+++  .++. .+..+++|+.|+|++|.+.+. .         .+ ..+..+ +|+.|++++|.+++.+|
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~-~---------~l-~~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE-R---------EL-DKIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG-G---------GG-GGGTTS-CCSEEECTTSTTGGGCS
T ss_pred             CCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc-h---------hh-hhcccC-CcceEEccCCcCccccC
Confidence            79999999999997  4555 567899999999999999742 0         11 223344 89999999999998887


Q ss_pred             h-------hhhCccccCcee
Q 047948          137 Q-------EVGQLTFLNHLI  149 (171)
Q Consensus       137 ~-------~~~~l~~L~~L~  149 (171)
                      .       .+..+++|+.||
T Consensus       238 ~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEES
T ss_pred             cchhHHHHHHHHCcccCeEC
Confidence            3       356788888876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=2.1e-06  Score=66.62  Aligned_cols=95  Identities=15%  Similarity=0.066  Sum_probs=75.3

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCC-EEecccCcccccCC
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLT-VLHISRNQLNGSIP  136 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~-~L~ls~N~l~g~~P  136 (171)
                      .+++.+++++|+++ .++...|.++..|+.++++.| +.. ++           +..|..+.+|+ .+++.. .++..-+
T Consensus       226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~-I~-----------~~aF~~~~~L~~~l~l~~-~l~~I~~  290 (329)
T 3sb4_A          226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKT-IG-----------QRVFSNCGRLAGTLELPA-SVTAIEF  290 (329)
T ss_dssp             TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCE-EC-----------TTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred             CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cce-eh-----------HHHhhCChhccEEEEEcc-cceEEch
Confidence            37899999999988 566558999999999999987 541 11           24688999999 999988 7775556


Q ss_pred             hhhhCccccCceeccccccc------cccchhhhccc
Q 047948          137 QEVGQLTFLNHLILDLIFLI------FWMVQSLVLLA  167 (171)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~  167 (171)
                      ..|.+|++|+.++++.|+++      +..+++|+.++
T Consensus       291 ~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          291 GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            78999999999999999887      45556666553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.04  E-value=4.4e-07  Score=65.11  Aligned_cols=89  Identities=13%  Similarity=0.113  Sum_probs=48.1

Q ss_pred             CEEEEEcCCC-cccee----cCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccc
Q 047948           59 RVVGINLTSM-SLNGT----LLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNG  133 (171)
Q Consensus        59 ~v~~L~l~~~-~l~~~----~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g  133 (171)
                      .++.|+|++| .+...    +.. .+...+.|++|++++|.+...--.        .+...+...+.|++|+|++|.++.
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~--------~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAF--------ALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHH--------HHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             CCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHH--------HHHHHHHhCCCcCEEECcCCcCCH
Confidence            5777777777 66421    222 345556777777777776421000        111223344556666666666653


Q ss_pred             c----CChhhhCccccCceec--cccccc
Q 047948          134 S----IPQEVGQLTFLNHLIL--DLIFLI  156 (171)
Q Consensus       134 ~----~P~~~~~l~~L~~L~L--s~N~l~  156 (171)
                      .    +...+...++|++|+|  ++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            2    2334444556666666  556665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.00  E-value=2.1e-07  Score=77.25  Aligned_cols=41  Identities=17%  Similarity=0.043  Sum_probs=18.1

Q ss_pred             cCCcCCCEEecccCccccc-CChhhhCccccCceeccccccc
Q 047948          116 GLLTHLTVLHISRNQLNGS-IPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       116 ~~l~~L~~L~ls~N~l~g~-~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ..+++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus       485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            3444444455544444432 2222334444555555555444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.74  E-value=1e-05  Score=66.99  Aligned_cols=18  Identities=11%  Similarity=0.071  Sum_probs=9.7

Q ss_pred             CCCCCCcEEEeecCcccc
Q 047948           80 SSFPHLAYLVLYNNELFY   97 (171)
Q Consensus        80 ~~L~~L~~L~l~~n~l~g   97 (171)
                      ..+++|+.|++++|.+.+
T Consensus       217 ~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HHCTTCCEEECSSCBGGG
T ss_pred             hhCCCCcEEeccCccHHH
Confidence            345556666666555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.73  E-value=4e-06  Score=69.44  Aligned_cols=84  Identities=18%  Similarity=0.170  Sum_probs=45.4

Q ss_pred             CEEEEEcCCCccceecCCCCCC-CCCCCcEEEeecC-cccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948           59 RVVGINLTSMSLNGTLLEFPFS-SFPHLAYLVLYNN-ELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP  136 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~-~L~~L~~L~l~~n-~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P  136 (171)
                      ++++|+++++.+++..+. .+. .+++|+.|++++| .+...           .++..+..+++|++|++++|.+++..+
T Consensus       106 ~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~-----------~l~~~~~~~~~L~~L~L~~~~i~~~~~  173 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTD-----------GLAAIAATCRNLKELDLRESDVDDVSG  173 (594)
T ss_dssp             TCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHH-----------HHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred             CCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHH-----------HHHHHHHhCCCCCEEeCcCCccCCcch
Confidence            566777777666554443 343 4667777777766 33211           022223355666666666666654433


Q ss_pred             hhhh----CccccCceeccccc
Q 047948          137 QEVG----QLTFLNHLILDLIF  154 (171)
Q Consensus       137 ~~~~----~l~~L~~L~Ls~N~  154 (171)
                      ..+.    .+++|++|++++|.
T Consensus       174 ~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          174 HWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             GGGGGSCTTCCCCCEEECTTCC
T ss_pred             HHHHHHhhcCCcCcEEEecccC
Confidence            3332    44566666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.61  E-value=0.00014  Score=56.19  Aligned_cols=37  Identities=8%  Similarity=0.120  Sum_probs=28.1

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccc
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELF   96 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~   96 (171)
                      .+++.|+|.. .++ .++...|.++++|+.++++.|.+.
T Consensus       101 ~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~  137 (329)
T 3sb4_A          101 QTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP  137 (329)
T ss_dssp             TTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC
T ss_pred             CCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc
Confidence            3688888888 776 455448899999999999988765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.59  E-value=2.8e-05  Score=55.44  Aligned_cols=85  Identities=9%  Similarity=0.054  Sum_probs=63.1

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCc-ccccccccccccccccCCccccCC----cCCCEEecccCc-cc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNE-LFYIILPQITNKLSGQIPSEIGLL----THLTVLHISRNQ-LN  132 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~-l~g~~p~~~~n~l~g~~p~~~~~l----~~L~~L~ls~N~-l~  132 (171)
                      ++++|+++++.++..--. .+..++.|+.|+|++|. ++..            --..++.+    ++|++|+++++. ++
T Consensus        62 ~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~------------gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDG------------CLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHH------------HHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             eEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHH------------HHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            799999999998755444 67899999999999985 5421            11234554    479999999974 77


Q ss_pred             ccCChhhhCccccCceeccccc-cc
Q 047948          133 GSIPQEVGQLTFLNHLILDLIF-LI  156 (171)
Q Consensus       133 g~~P~~~~~l~~L~~L~Ls~N~-l~  156 (171)
                      ..--..+.++++|++|++++.. ++
T Consensus       129 D~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHHHHhcCCCCCEEECCCCCCCC
Confidence            5433457789999999998874 44

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.56  E-value=5.9e-06  Score=68.45  Aligned_cols=52  Identities=10%  Similarity=-0.068  Sum_probs=31.7

Q ss_pred             CcCCCEEecccCcccccCChhh-hCccccCceeccccccc-------cccchhhhccccc
Q 047948          118 LTHLTVLHISRNQLNGSIPQEV-GQLTFLNHLILDLIFLI-------FWMVQSLVLLAIW  169 (171)
Q Consensus       118 l~~L~~L~ls~N~l~g~~P~~~-~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~  169 (171)
                      +++|+.|++++|.+++..+..+ ..+++|++|++++|.++       ...+++|+.|++.
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~  514 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS  514 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence            5667777777777665444444 45667777777777765       1224566666653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.43  E-value=3.5e-05  Score=55.01  Aligned_cols=83  Identities=18%  Similarity=0.117  Sum_probs=60.1

Q ss_pred             CCCCCCCCcEEEeecC-cccccccccccccccccCCccccCCcCCCEEecccCccccc----CChhhhCccccCceeccc
Q 047948           78 PFSSFPHLAYLVLYNN-ELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGS----IPQEVGQLTFLNHLILDL  152 (171)
Q Consensus        78 ~l~~L~~L~~L~l~~n-~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~L~Ls~  152 (171)
                      .+...+.|++|++++| .+...--        ..+...+...+.|++|+|++|.+...    +...+...++|++|+|++
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~--------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~  102 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTL--------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES  102 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHH--------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHH--------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence            4567789999999999 7753110        02334566778999999999999753    334455668899999999


Q ss_pred             cccc----------cccchhhhcccc
Q 047948          153 IFLI----------FWMVQSLVLLAI  168 (171)
Q Consensus       153 N~l~----------~~~~~~L~~L~l  168 (171)
                      |.|.          ....++|++|++
T Consensus       103 N~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          103 NFISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             SCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CcCCHHHHHHHHHHHHhCCCceEEEe
Confidence            9998          233356888887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.14  E-value=0.0001  Score=58.27  Aligned_cols=53  Identities=13%  Similarity=0.045  Sum_probs=32.4

Q ss_pred             CCcCCCEEecccCcccccCChhhh---CccccCceecccccccc----------ccchhhhccccc
Q 047948          117 LLTHLTVLHISRNQLNGSIPQEVG---QLTFLNHLILDLIFLIF----------WMVQSLVLLAIW  169 (171)
Q Consensus       117 ~l~~L~~L~ls~N~l~g~~P~~~~---~l~~L~~L~Ls~N~l~~----------~~~~~L~~L~l~  169 (171)
                      .+++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+..          ..+++|+.|++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence            356777777777776654443333   35677777777777762          223556666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.96  E-value=0.0008  Score=47.83  Aligned_cols=75  Identities=9%  Similarity=0.089  Sum_probs=54.8

Q ss_pred             CCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCc-ccccCChhhhCc----cccCceeccccc-cc
Q 047948           83 PHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQ-LNGSIPQEVGQL----TFLNHLILDLIF-LI  156 (171)
Q Consensus        83 ~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~P~~~~~l----~~L~~L~Ls~N~-l~  156 (171)
                      -.|+.||++++.++..          |  -..+..+++|+.|+|+++. ++..--..+..+    ++|++|+|+++. ++
T Consensus        61 ~~L~~LDLs~~~Itd~----------G--L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI----------G--FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGG----------G--GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHH----------H--HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            4699999999987621          1  1346789999999999985 664433445553    479999999874 77


Q ss_pred             ------cccchhhhccccc
Q 047948          157 ------FWMVQSLVLLAIW  169 (171)
Q Consensus       157 ------~~~~~~L~~L~l~  169 (171)
                            ...+++|+.|++.
T Consensus       129 D~Gl~~L~~~~~L~~L~L~  147 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLS  147 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEE
T ss_pred             HHHHHHHhcCCCCCEEECC
Confidence                  4556788888873

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.82  E-value=0.0034  Score=50.10  Aligned_cols=39  Identities=10%  Similarity=-0.001  Sum_probs=20.8

Q ss_pred             ccccCCcCCCEEecccCccc-----ccCChhhhCccccCceecc
Q 047948          113 SEIGLLTHLTVLHISRNQLN-----GSIPQEVGQLTFLNHLILD  151 (171)
Q Consensus       113 ~~~~~l~~L~~L~ls~N~l~-----g~~P~~~~~l~~L~~L~Ls  151 (171)
                      ..|..+++|+.+++.+|.+.     ..-+..|.+|++|+.+++.
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            34555666666666655543     1223345555556665555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.81  E-value=0.00025  Score=56.04  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=37.4

Q ss_pred             CCcCCCEEecccCccccc----CChhhhCccccCceeccccccccccchhhh
Q 047948          117 LLTHLTVLHISRNQLNGS----IPQEVGQLTFLNHLILDLIFLIFWMVQSLV  164 (171)
Q Consensus       117 ~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L~  164 (171)
                      .+++|+.|+|+.|.+++.    ++..+..+++|+.|+|+.|.++......|.
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence            578999999999999864    444456789999999999999844444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.60  E-value=0.0018  Score=43.57  Aligned_cols=55  Identities=24%  Similarity=0.313  Sum_probs=26.5

Q ss_pred             EEEcCCCccc-eecCCCCCCCCCCCcEEEeecCcccccccccccccccccCC-ccccCCcCCCEEecccCccc
Q 047948           62 GINLTSMSLN-GTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIP-SEIGLLTHLTVLHISRNQLN  132 (171)
Q Consensus        62 ~L~l~~~~l~-~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p-~~~~~l~~L~~L~ls~N~l~  132 (171)
                      .++-++++++ ..+|. .+.  ..|+.|+|++|+++             .+| ..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~-~lp--~~l~~L~Ls~N~l~-------------~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AFP--VDTTELVLTGNNLT-------------ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CCC--TTCSEEECTTSCCS-------------SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC-CCC--cCCCEEECCCCcCC-------------ccChhhhhhccccCEEEecCCCee
Confidence            3444455543 23443 221  24566666666654             122 23445556666666666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.35  E-value=0.01  Score=47.34  Aligned_cols=94  Identities=14%  Similarity=0.116  Sum_probs=51.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccc----cccc-cc-----------cccccccCCccccCCcCCC
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY----IILP-QI-----------TNKLSGQIPSEIGLLTHLT  122 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g----~~p~-~~-----------~n~l~g~~p~~~~~l~~L~  122 (171)
                      .++.+.+. +.++ .++...|..++.|+.+++.+|.+..    .++. .+           .+.+...-...|..+++|+
T Consensus       249 ~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCC
T ss_pred             CccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCcc
Confidence            34555552 3344 3444378888888888888776541    1111 11           1222222223456667777


Q ss_pred             EEecccCcccccCChhhhCccccCceeccccccc
Q 047948          123 VLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       123 ~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .+.+..| ++..-+..|.++ +|+.+++.+|.+.
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            7777544 553344556666 7777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.62  E-value=0.018  Score=38.49  Aligned_cols=37  Identities=22%  Similarity=0.100  Sum_probs=24.3

Q ss_pred             CCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          120 HLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       120 ~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +|+.|+|++|+++..-+..|..+++|++|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5677777777777333334566777777777777665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.33  E-value=0.0056  Score=44.25  Aligned_cols=87  Identities=16%  Similarity=0.133  Sum_probs=57.6

Q ss_pred             CCEEEEEcCCC-ccce----ecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCccc
Q 047948           58 GRVVGINLTSM-SLNG----TLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLN  132 (171)
Q Consensus        58 ~~v~~L~l~~~-~l~~----~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~  132 (171)
                      ..++.|+|.++ .+..    .+-. .+..=+.|+.|+|++|.+...--        ..+-..+..-+.|+.|+|+.|++.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga--------~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEA--------RGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHH--------TTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHH--------HHHHHHHhcCCccCeEecCCCcCC
Confidence            46899999985 6642    2333 46667889999999998862110        012233444578999999999998


Q ss_pred             ccCC----hhhhCccccCceecccc
Q 047948          133 GSIP----QEVGQLTFLNHLILDLI  153 (171)
Q Consensus       133 g~~P----~~~~~l~~L~~L~Ls~N  153 (171)
                      ..--    +.+..-+.|++|+|++|
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCC
Confidence            5322    23444467999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.58  E-value=0.092  Score=41.27  Aligned_cols=55  Identities=13%  Similarity=0.005  Sum_probs=33.8

Q ss_pred             ccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc---cccchhhhcccc
Q 047948          113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI---FWMVQSLVLLAI  168 (171)
Q Consensus       113 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~---~~~~~~L~~L~l  168 (171)
                      ..|..+.+|+.+.+..+ ++-.-..+|.+|++|+.+++.+|...   +....+|+.+.+
T Consensus       328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPV  385 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-----
T ss_pred             hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEe
Confidence            45677888888888654 55233456788888888888877654   333445555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.83  E-value=0.0098  Score=42.94  Aligned_cols=90  Identities=10%  Similarity=0.095  Sum_probs=53.9

Q ss_pred             CCEEEEEcCCCccceecCCCC----CCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccC---c
Q 047948           58 GRVVGINLTSMSLNGTLLEFP----FSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRN---Q  130 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~----l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N---~  130 (171)
                      ..++.|+|++|.+....-. .    +..=+.|+.|+|+.|.+...--        -.+-..+..-+.|+.|+|++|   .
T Consensus        70 ~~L~~L~L~~n~igd~ga~-alA~aL~~N~tL~~L~L~~N~Ig~~Ga--------~ala~aL~~N~tL~~L~L~n~~~~~  140 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEAR-GLIELIETSPSLRVLNVESNFLTPELL--------ARLLRSTLVTQSIVEFKADNQRQSV  140 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHT-THHHHHHHCSSCCEEECCSSBCCHHHH--------HHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             CCcCEEEccCCCCChHHHH-HHHHHHhcCCccCeEecCCCcCCHHHH--------HHHHHHHhhCCceeEEECCCCcCcC
Confidence            3688899999888743222 2    2234678889999888863200        012233444566889998765   3


Q ss_pred             cccc----CChhhhCccccCceeccccccc
Q 047948          131 LNGS----IPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       131 l~g~----~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +...    +-+.+..=++|+.|+++.|.+.
T Consensus       141 ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          141 LGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             cCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            3322    2233444467888888877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.60  E-value=0.28  Score=38.08  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=17.5

Q ss_pred             ccCCcCCCEEecccCcccccCChhhhCccccCceecc
Q 047948          115 IGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD  151 (171)
Q Consensus       115 ~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls  151 (171)
                      |..+.+|+.+.+..+.++-.-...|.++.+|+.+.|.
T Consensus       282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            3444555555555444442222344455555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.21  E-value=0.42  Score=37.43  Aligned_cols=40  Identities=13%  Similarity=-0.015  Sum_probs=23.6

Q ss_pred             ccccCCcCCCEEecccCcccccCChhhhCccccCceecccc
Q 047948          113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI  153 (171)
Q Consensus       113 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N  153 (171)
                      ..|..+.+|+.+.+..+ ++-.-..+|.+|++|+.+++..+
T Consensus       337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            34566667777776655 44233345666777777766543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.15  E-value=0.67  Score=35.87  Aligned_cols=62  Identities=13%  Similarity=0.081  Sum_probs=41.6

Q ss_pred             CCCCCCCCcEEEeecCcccccccccccccccccC-CccccCCcCCCEEecccCcccccCChhhhCccccCceecccc
Q 047948           78 PFSSFPHLAYLVLYNNELFYIILPQITNKLSGQI-PSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI  153 (171)
Q Consensus        78 ~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~-p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N  153 (171)
                      .|..+..|+.+.+..+.++             .+ ...|..+.+|+.+.+..+ ++-.-..+|.+|++|+.+.+..+
T Consensus       281 aF~~c~~L~~i~l~~~~i~-------------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIE-------------TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCC-------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccccccccc-------------eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            4555666666666555443             22 246788899999999754 66233456889999999988654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.54  E-value=0.98  Score=35.27  Aligned_cols=55  Identities=11%  Similarity=0.093  Sum_probs=39.1

Q ss_pred             ccccCCcCCCEEecccCcccccCChhhhCccccCceeccccc--cc---cccchhhhcccc
Q 047948          113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIF--LI---FWMVQSLVLLAI  168 (171)
Q Consensus       113 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~--l~---~~~~~~L~~L~l  168 (171)
                      ..|..+.+|+.+++..+ ++-.-..+|.+|.+|+.+.+..+-  +.   +....+|+.+.+
T Consensus       305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEE
T ss_pred             eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEE
Confidence            45778899999999764 553444578899999999987551  21   556677777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=89.35  E-value=1.5  Score=34.17  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=36.3

Q ss_pred             ccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948          113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI  168 (171)
Q Consensus       113 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l  168 (171)
                      ..|..+.+|+.+++..+ ++-.-..+|.+|++|+.+.+..| ++      +..+.+|+.+.+
T Consensus       314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            35677888888888644 66333456888888998888766 33      455556666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-05

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.1 bits (110), Expect = 2e-07
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           N++ G +P  +  L  L  L++S N L G IP + G L   +     
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYA 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 4e-04
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 11  EEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPC--AWSGIHCN---HAGRVVGINL 65
           ++  AL++ K  L   + + L SW  ++        C   W G+ C+      RV  ++L
Sbjct: 6   QDKQALLQIKKDL--GNPTTLSSWLPTT------DCCNRTWLGVLCDTDTQTYRVNNLDL 57

Query: 66  TSMSLNGTL-LEFPFSSFPHLAYLVLYNNELFYIILPQI 103
           + ++L     +    ++ P+L +L +         +P  
Sbjct: 58  SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-05
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 16/119 (13%)

Query: 33  SWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYN 92
           S       +T +          +    +  +   ++  N      P SS   L  L   N
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN 338

Query: 93  NELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
           N++                 S +  LT++  L    NQ++   P  +  LT +  L L+
Sbjct: 339 NKV--------------SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.41
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.34
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.28
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.27
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.25
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.18
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.07
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.06
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.02
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.93
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.85
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.83
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.83
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.47
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.29
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.16
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.0
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.87
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.77
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.4
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.26

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=2.7e-25  Score=170.98  Aligned_cols=145  Identities=26%  Similarity=0.452  Sum_probs=118.5

Q ss_pred             CChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCC--cccceeeCCCC---CEEEEEcCCCccce--ecCCCCCC
Q 047948            8 NSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPC--AWSGIHCNHAG---RVVGINLTSMSLNG--TLLEFPFS   80 (171)
Q Consensus         8 ~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c--~w~gv~c~~~~---~v~~L~l~~~~l~~--~~p~~~l~   80 (171)
                      |.++|++||++||+.+.+ + ..+++|.      .+.|||  .|.||+|+..+   +|+.|+|+++.+.|  .+|+ ++.
T Consensus         3 c~~~e~~aLl~~k~~~~~-~-~~l~sW~------~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~-~l~   73 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGN-P-TTLSSWL------PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLA   73 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTC-C-GGGTTCC------TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGG
T ss_pred             CCHHHHHHHHHHHHHCCC-C-CcCCCCC------CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCCh-HHh
Confidence            778999999999999976 3 4588998      678999  49999998643   79999999999987  5778 999


Q ss_pred             CCCCCcEEEeec-Ccccccccccc------------cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCc
Q 047948           81 SFPHLAYLVLYN-NELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNH  147 (171)
Q Consensus        81 ~L~~L~~L~l~~-n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~  147 (171)
                      .|++|++|++++ |.+.|.+|..+            +|++.+..|..+..+..|+.++++.|.+.+.+|..+.+++.+++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             cCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            999999999986 89999999877            67777777777777777777777777777777777777777777


Q ss_pred             eeccccccccccch
Q 047948          148 LILDLIFLIFWMVQ  161 (171)
Q Consensus       148 L~Ls~N~l~~~~~~  161 (171)
                      +++++|.+.+.++.
T Consensus       154 l~l~~n~l~~~ip~  167 (313)
T d1ogqa_         154 ITFDGNRISGAIPD  167 (313)
T ss_dssp             EECCSSCCEEECCG
T ss_pred             eecccccccccccc
Confidence            77777777654443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=2.5e-15  Score=107.40  Aligned_cols=110  Identities=24%  Similarity=0.255  Sum_probs=89.3

Q ss_pred             CcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------c
Q 047948           47 CAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------T  104 (171)
Q Consensus        47 c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~  104 (171)
                      |.|..|.|...+          ++++|+|++|.++..++...|..++.|+.|++++|.+....+..+            +
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            568888886432          789999999999876655478899999999999999987766555            6


Q ss_pred             ccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       105 n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      |++....|..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            7888766777888888888888888888666677888888888888888876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=3e-14  Score=108.48  Aligned_cols=65  Identities=28%  Similarity=0.352  Sum_probs=53.0

Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccccccc-----hhhhccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMV-----QSLVLLAIW  169 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~-----~~L~~L~l~  169 (171)
                      .|.+.+.+| .++.+++|+.|++++|+++|.+|+.++++++|++|+|++|+|+|.++     ++|+.+++.
T Consensus       230 ~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~  299 (313)
T d1ogqa_         230 KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA  299 (313)
T ss_dssp             SSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred             ccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhC
Confidence            456665544 57788999999999999999999999999999999999999996554     456666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=1.8e-13  Score=91.33  Aligned_cols=81  Identities=22%  Similarity=0.189  Sum_probs=62.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC--
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP--  136 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P--  136 (171)
                      ++++|++++|.++ .+|+ .+..++.|+.|++++|.++             .+| .+..+++|++|++++|+++ .+|  
T Consensus        21 ~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~-------------~l~-~~~~l~~L~~L~l~~N~i~-~~~~~   83 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALE-------------NVD-GVANLPRLQELLLCNNRLQ-QSAAI   83 (124)
T ss_dssp             TCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCC-------------CCG-GGTTCSSCCEEECCSSCCC-SSSTT
T ss_pred             CCCEEECCCCccC-cchh-hhhhhhccccccccccccc-------------ccC-ccccccccCeEECCCCccC-CCCCc
Confidence            5778888888876 5666 6777888888888888775             233 4778889999999999988 444  


Q ss_pred             hhhhCccccCceeccccccc
Q 047948          137 QEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ..+..+++|++|++++|+++
T Consensus        84 ~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          84 QPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             GGGGGCTTCCEEECTTSGGG
T ss_pred             hhhcCCCCCCEEECCCCcCC
Confidence            45788888999999999886

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=3.5e-13  Score=96.03  Aligned_cols=106  Identities=23%  Similarity=0.212  Sum_probs=89.4

Q ss_pred             EEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc-c------------cccccccCCccccCCcCCCEEecc
Q 047948           61 VGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ-I------------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        61 ~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~-~------------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      +.++.++++++ .+|. .+.  +.+++|++++|.+++.++.. +            +|.+.+..+..+..+++|++|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~-~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCC-CCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            47889999998 7787 553  68999999999998655433 2            788888888899999999999999


Q ss_pred             cCcccccCChhhhCccccCceeccccccc------cccchhhhcccccc
Q 047948          128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIWP  170 (171)
Q Consensus       128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~~  170 (171)
                      +|++++..|..|.++++|++|+|++|+|+      +..+++|++|++.+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence            99999777778999999999999999998      45677888888853

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.34  E-value=2e-12  Score=97.75  Aligned_cols=51  Identities=20%  Similarity=0.305  Sum_probs=31.4

Q ss_pred             ccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948          105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       105 n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      |.+.+..+..+..+++|++|++++|.++ .+|..+.++++|++|+|++|+|+
T Consensus       205 n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         205 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            4444444455555666666666666666 55666666666666666666665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.6e-12  Score=94.13  Aligned_cols=39  Identities=23%  Similarity=0.169  Sum_probs=24.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI   98 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~   98 (171)
                      .+++|+|++|.++. +|+..|..++.|++|++++|.+...
T Consensus        33 ~~~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~ls~n~l~~i   71 (284)
T d1ozna_          33 ASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARI   71 (284)
T ss_dssp             TCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCEEECcCCcCCC-CCHHHhhcccccccccccccccccc
Confidence            45677777777763 3332567777777777777766544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.4e-12  Score=93.56  Aligned_cols=66  Identities=21%  Similarity=0.200  Sum_probs=37.8

Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc-----cccchhhhccccc
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAIW  169 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l~  169 (171)
                      .|.+....+..+..++.|+.+++++|++++..+..|..+++|++|+|++|+|+     ...+++|+.|+|.
T Consensus       133 ~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~  203 (266)
T d1p9ag_         133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH  203 (266)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred             ccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEec
Confidence            34444444444555666666666666666555555666666666666666665     2223455555553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.4e-12  Score=88.76  Aligned_cols=93  Identities=19%  Similarity=0.193  Sum_probs=51.7

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC--
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP--  136 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P--  136 (171)
                      +++.|++++|.++ .++  .+..++.|+.|++++|.++            ...+..+..+++|+.|++++|+++ .++  
T Consensus        42 ~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~------------~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l  105 (162)
T d1a9na_          42 QFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRIC------------RIGEGLDQALPDLTELILTNNSLV-ELGDL  105 (162)
T ss_dssp             CCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCC------------EECSCHHHHCTTCCEEECCSCCCC-CGGGG
T ss_pred             cCCEEECCCCCCC-ccC--CcccCcchhhhhccccccc------------CCCccccccccccccceecccccc-ccccc
Confidence            3444444444444 222  2444444444555444443            222223456777778888777777 444  


Q ss_pred             hhhhCccccCceeccccccc---------cccchhhhccc
Q 047948          137 QEVGQLTFLNHLILDLIFLI---------FWMVQSLVLLA  167 (171)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~---------~~~~~~L~~L~  167 (171)
                      ..+..+++|++|++++|+++         ...+++|+.||
T Consensus       106 ~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         106 DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            24667777778888777765         23445666655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=3.9e-12  Score=84.64  Aligned_cols=90  Identities=28%  Similarity=0.312  Sum_probs=76.2

Q ss_pred             EEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhhC
Q 047948           62 GINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQ  141 (171)
Q Consensus        62 ~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~  141 (171)
                      .|++++|+++ .++  .+..++.|++|++++|.++             .+|+.++.+++|+.|++++|.++ .+| .+.+
T Consensus         2 ~L~Ls~n~l~-~l~--~l~~l~~L~~L~ls~N~l~-------------~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~   63 (124)
T d1dcea3           2 VLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLR-------------ALPPALAALRCLEVLQASDNALE-NVD-GVAN   63 (124)
T ss_dssp             EEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCC-------------CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTT
T ss_pred             EEEcCCCCCC-CCc--ccccCCCCCEEECCCCccC-------------cchhhhhhhhccccccccccccc-ccC-cccc
Confidence            6899999998 554  4889999999999999987             56778899999999999999999 566 4899


Q ss_pred             ccccCceeccccccc-------cccchhhhccccc
Q 047948          142 LTFLNHLILDLIFLI-------FWMVQSLVLLAIW  169 (171)
Q Consensus       142 l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~  169 (171)
                      +++|++|++++|+++       ...+++|+.|++.
T Consensus        64 l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~   98 (124)
T d1dcea3          64 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ   98 (124)
T ss_dssp             CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             ccccCeEECCCCccCCCCCchhhcCCCCCCEEECC
Confidence            999999999999997       2334577777774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=9.8e-12  Score=85.83  Aligned_cols=84  Identities=20%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             CEEEEEcCCCc-cceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948           59 RVVGINLTSMS-LNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ  137 (171)
Q Consensus        59 ~v~~L~l~~~~-l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~  137 (171)
                      ++++|++.+++ ++ .++...|.+++.|+.|++++|+++.            ..|..|..+++|++|+|++|+++ .+|.
T Consensus        32 ~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~------------i~~~~f~~l~~L~~L~Ls~N~l~-~l~~   97 (156)
T d2ifga3          32 NLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRF------------VAPDAFHFTPRLSRLNLSFNALE-SLSW   97 (156)
T ss_dssp             CCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCE------------ECTTGGGSCSCCCEEECCSSCCS-CCCS
T ss_pred             ccCeeecCCCcccc-ccCchhhccccccCcceeeccccCC------------cccccccccccccceeccCCCCc-ccCh
Confidence            78899998765 77 4554379999999999999998873            22467889999999999999999 7777


Q ss_pred             hhhCccccCceeccccccc
Q 047948          138 EVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .......|++|+|++|++.
T Consensus        98 ~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          98 KTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             TTTCSCCCCEEECCSSCCC
T ss_pred             hhhccccccccccCCCccc
Confidence            6655567999999999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.6e-12  Score=93.49  Aligned_cols=97  Identities=19%  Similarity=0.163  Sum_probs=68.1

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      .++.+++.+|.+++..+. .|..++.|+.|++++|.+.+..+..+            .|++.+..|..|..+++|++|++
T Consensus       130 ~L~~l~l~~N~l~~i~~~-~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDD-TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             TCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccchhhhccccccccChh-HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccc
Confidence            567777777777643344 66777777777777777776555443            56777766777777777777777


Q ss_pred             ccCcccccCChhhhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|.+.+..|..|+.+++|++|++++|++.
T Consensus       209 ~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         209 FANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccccccccccccccccCEEEecCCCCC
Confidence            777777666666777777777777777776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.4e-11  Score=89.49  Aligned_cols=111  Identities=20%  Similarity=0.122  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc----------ccccc--------------------
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI----------TNKLS--------------------  108 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~----------~n~l~--------------------  108 (171)
                      +++.|+|++|.+++..+. .|..+++|++|++++|+++..-+...          .|++.                    
T Consensus        32 ~l~~L~Ls~N~i~~l~~~-~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN  110 (266)
T ss_dssp             TCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCcCCCcCHH-Hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            566777777776643334 56666777777777666653211111          33333                    


Q ss_pred             ---ccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhcccccc
Q 047948          109 ---GQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIWP  170 (171)
Q Consensus       109 ---g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~~  170 (171)
                         ...+..+..+.+++.|++++|.++...+..+..++.|+++++++|+++      +..+++|++|+|.+
T Consensus       111 ~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeeccc
Confidence               223333444555555555566666334444556777888888888776      34466777777743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.5e-11  Score=82.07  Aligned_cols=96  Identities=20%  Similarity=0.205  Sum_probs=77.6

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE  138 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~  138 (171)
                      +++.|+|++|+++ .++. .+..++.|+.|++++|.++             .+ +.+..+++|+.|++++|+++...+..
T Consensus        19 ~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~-------------~l-~~~~~l~~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          19 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR-------------KL-DGFPLLRRLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC-------------EE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             cCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCC-------------cc-CCcccCcchhhhhcccccccCCCccc
Confidence            6899999999998 5565 5678999999999999986             23 24778999999999999999544445


Q ss_pred             hhCccccCceeccccccc-------cccchhhhcccccc
Q 047948          139 VGQLTFLNHLILDLIFLI-------FWMVQSLVLLAIWP  170 (171)
Q Consensus       139 ~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~~  170 (171)
                      +..+++|++|++++|+++       ...+++|+.|++..
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCC
Confidence            678999999999999987       23456778877753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=1.2e-10  Score=87.77  Aligned_cols=95  Identities=15%  Similarity=0.128  Sum_probs=74.2

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI  126 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l  126 (171)
                      +++.+++.+|...+..+. .+..++.++.|++++|.+.+..+..+            +|++. .+|..+..+++|++|++
T Consensus       172 ~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~L  249 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL  249 (305)
T ss_dssp             TCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred             ccCEEECCCCcCCCCChh-Hhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEEC
Confidence            577788888877766666 77888888888888888876655444            56665 57888999999999999


Q ss_pred             ccCcccccCChh-------hhCccccCceeccccccc
Q 047948          127 SRNQLNGSIPQE-------VGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       127 s~N~l~g~~P~~-------~~~l~~L~~L~Ls~N~l~  156 (171)
                      ++|+++ .++..       ...+.+|+.|+|++|+++
T Consensus       250 s~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         250 HNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999999 55532       235678999999999987

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=1.4e-10  Score=83.40  Aligned_cols=104  Identities=22%  Similarity=0.325  Sum_probs=72.2

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc-----c----------------------------cc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ-----I----------------------------TN  105 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~-----~----------------------------~n  105 (171)
                      ++++|++++|.+++ +++  +..++.|+.|++++|+++.. |..     +                            .|
T Consensus        69 ~L~~L~L~~n~i~~-l~~--~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n  144 (210)
T d1h6ta2          69 NVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN  144 (210)
T ss_dssp             TCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCEEeCCCccccC-ccc--cccCcccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            56777777777664 332  55666777777777766542 210     0                            34


Q ss_pred             cccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc----cccchhhhcccccc
Q 047948          106 KLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIWP  170 (171)
Q Consensus       106 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~~  170 (171)
                      .+.+  +..+..+++|+.+++++|++++ +++ +.++++|+.|++++|+++    ...+++|++|+|.+
T Consensus       145 ~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         145 KITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             cccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence            4433  2346678899999999999984 543 889999999999999987    45567888888765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.02  E-value=2e-10  Score=83.17  Aligned_cols=55  Identities=18%  Similarity=0.225  Sum_probs=42.2

Q ss_pred             cccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc----cccchhhhcccccc
Q 047948          114 EIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIWP  170 (171)
Q Consensus       114 ~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~~  170 (171)
                      .+..+++|+.|++++|+++ .+|+ +.++++|++|++++|+++    ...+++|++|++.+
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             hhcccccceecccCCCccC-CChh-hcCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            4678888899999988888 4544 788888999999998887    34566777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.6e-10  Score=77.21  Aligned_cols=90  Identities=21%  Similarity=0.064  Sum_probs=68.3

Q ss_pred             CCCccceecCCCCCCCCCCCcEEEeecCc-ccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhhCccc
Q 047948           66 TSMSLNGTLLEFPFSSFPHLAYLVLYNNE-LFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTF  144 (171)
Q Consensus        66 ~~~~l~~~~p~~~l~~L~~L~~L~l~~n~-l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~  144 (171)
                      .++++. ..|. .+..+++|++|++++|+ ++.            ..+..|..+++|+.|++++|+++..-|..|..+++
T Consensus        16 ~~~~~~-~~p~-~l~~l~~l~~L~l~~n~~l~~------------i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3          16 TRDGAL-DSLH-HLPGAENLTELYIENQQHLQH------------LELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             CSSCCC-TTTT-TSCSCSCCSEEECCSCSSCCE------------ECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             cCCCCc-cCcc-cccCccccCeeecCCCccccc------------cCchhhccccccCcceeeccccCCccccccccccc
Confidence            334444 4566 68889999999998664 652            22356889999999999999999777888999999


Q ss_pred             cCceecccccccc-----ccchhhhccccc
Q 047948          145 LNHLILDLIFLIF-----WMVQSLVLLAIW  169 (171)
Q Consensus       145 L~~L~Ls~N~l~~-----~~~~~L~~L~l~  169 (171)
                      |++|+|++|+|+.     .....|+.|+|.
T Consensus        82 L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~  111 (156)
T d2ifga3          82 LSRLNLSFNALESLSWKTVQGLSLQELVLS  111 (156)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSCCCCEEECC
T ss_pred             ccceeccCCCCcccChhhhccccccccccC
Confidence            9999999999981     112256677663

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.95  E-value=4.4e-10  Score=86.40  Aligned_cols=64  Identities=19%  Similarity=0.217  Sum_probs=48.0

Q ss_pred             cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc----cccchhhhccccccC
Q 047948          104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIWPT  171 (171)
Q Consensus       104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~~~  171 (171)
                      +|++++..  .+..+++|+.|++++|+++ .+| .+.++++|++|++++|+++    ...+++|+.|+|.+|
T Consensus       316 ~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         316 FNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             CCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            45665532  3678889999999999888 455 5888999999999999888    344567888887543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1e-09  Score=79.81  Aligned_cols=53  Identities=17%  Similarity=0.354  Sum_probs=37.5

Q ss_pred             CcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccc
Q 047948           47 CAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIIL  100 (171)
Q Consensus        47 c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p  100 (171)
                      |....|.|...          .++++|++++|.++ .++...|.++++|++|++++|.+...++
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~   70 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIE   70 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceee
Confidence            45666666432          26888999998887 4544368888899999999887765443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.85  E-value=2.9e-11  Score=86.50  Aligned_cols=92  Identities=23%  Similarity=0.240  Sum_probs=70.0

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH  125 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~  125 (171)
                      .+++.|+|++|.++ .++  .+..+++|+.|++++|.++. +|...            +|+++. + +.+..+++|+.|+
T Consensus        48 ~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~  121 (198)
T d1m9la_          48 KACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVLY  121 (198)
T ss_dssp             TTCCEEECSEEEES-CCC--CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEEE
T ss_pred             cccceeECcccCCC-Ccc--cccCCccccChhhccccccc-ccccccccccccccccccccccc-c-ccccccccccccc
Confidence            37899999999988 454  48889999999999999873 33221            566654 2 3467778888888


Q ss_pred             cccCcccccCC--hhhhCccccCceeccccccc
Q 047948          126 ISRNQLNGSIP--QEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       126 ls~N~l~g~~P--~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      +++|+++ .++  ..+..+++|++|++++|++.
T Consensus       122 L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         122 MSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccchhc-cccccccccCCCccceeecCCCccc
Confidence            8888887 444  35778888888888888876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=5.8e-09  Score=73.98  Aligned_cols=105  Identities=22%  Similarity=0.309  Sum_probs=59.7

Q ss_pred             CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc----c------cccccccCCccccCCcCCCEEecc
Q 047948           58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ----I------TNKLSGQIPSEIGLLTHLTVLHIS  127 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~----~------~n~l~g~~p~~~~~l~~L~~L~ls  127 (171)
                      .++++|++++|++++ ++  .+..++.|+.|++++|.+....+-.    +      .+.+..  ...+..+++|+.|+++
T Consensus        62 ~nL~~L~Ls~N~l~~-~~--~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~  136 (199)
T d2omxa2          62 NNLTQINFSNNQLTD-IT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELS  136 (199)
T ss_dssp             TTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECC
T ss_pred             CCcCcCccccccccC-cc--cccCCccccccccccccccccccccccccccccccccccccc--ccccchhhhhHHhhhh
Confidence            378889999888874 33  3778888888888888766432110    0      222221  1234555666666666


Q ss_pred             cCcccccCChhhhCccccCceeccccccc----cccchhhhccccc
Q 047948          128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW  169 (171)
Q Consensus       128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~  169 (171)
                      +|++. .+| .+..+++|++|++.+|+++    ...+++|++|++.
T Consensus       137 ~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls  180 (199)
T d2omxa2         137 SNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDIS  180 (199)
T ss_dssp             SSCCC-CCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             hhhhc-ccc-cccccccccccccccccccCCccccCCCCCCEEECC
Confidence            66655 333 3455555566666555554    2334455555553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=4e-09  Score=74.86  Aligned_cols=104  Identities=24%  Similarity=0.272  Sum_probs=74.3

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc----c------cccccccCCccccCCcCCCEEeccc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ----I------TNKLSGQIPSEIGLLTHLTVLHISR  128 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~----~------~n~l~g~~p~~~~~l~~L~~L~ls~  128 (171)
                      +++.|++++++++ .+.  .+..+++|++|++++|++++..|-.    +      .|.+.. ++ .+..++.|+.|++++
T Consensus        41 ~l~~L~l~~~~i~-~l~--~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          41 QVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             TCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECCS
T ss_pred             CCCEEECCCCCCC-Ccc--ccccCCCcCcCccccccccCcccccCCccccccccccccccc-cc-ccccccccccccccc
Confidence            6899999999987 343  3788999999999999998643311    1      344332 32 467788888888888


Q ss_pred             CcccccCChhhhCccccCceeccccccc----cccchhhhccccc
Q 047948          129 NQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW  169 (171)
Q Consensus       129 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~  169 (171)
                      |.+.. + +.+..+++|++|++++|++.    ...+++|++|++.
T Consensus       116 ~~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~  158 (199)
T d2omxa2         116 NQITD-I-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFS  158 (199)
T ss_dssp             SCCCC-C-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             ccccc-c-cccchhhhhHHhhhhhhhhcccccccccccccccccc
Confidence            87773 2 24677888888888888876    3445667777663

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=1.1e-08  Score=73.12  Aligned_cols=103  Identities=19%  Similarity=0.213  Sum_probs=64.9

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc----------cccccccCCccccCCcCCCEEeccc
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI----------TNKLSGQIPSEIGLLTHLTVLHISR  128 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~----------~n~l~g~~p~~~~~l~~L~~L~ls~  128 (171)
                      .++.++++++.++. ++  .+..+++|++|++++|++++..+..-          +|++++ +| .+..+++|+.|++++
T Consensus        47 ~L~~L~l~~~~i~~-l~--~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          47 SIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             TCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred             CccEEECcCCCCCC-ch--hHhhCCCCCEEeCCCccccCccccccCccccccccccccccc-cc-ccccccccccccccc
Confidence            58899999999874 33  37789999999999999985432111          455543 22 355566666666666


Q ss_pred             CcccccCChhhhCccccCceeccccccc----cccchhhhcccc
Q 047948          129 NQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAI  168 (171)
Q Consensus       129 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l  168 (171)
                      |.+. .++ .+..++.++.+++++|.++    ...+++|+.+++
T Consensus       122 ~~~~-~~~-~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l  163 (210)
T d1h6ta2         122 NGIS-DIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL  163 (210)
T ss_dssp             SCCC-CCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             cccc-ccc-ccccccccccccccccccccccccccccccccccc
Confidence            6655 332 3555666666666666655    233445555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=6.9e-09  Score=79.54  Aligned_cols=77  Identities=25%  Similarity=0.311  Sum_probs=58.0

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE  138 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~  138 (171)
                      .++.+++++|.+++. +  ++..+++|++|++++|+++             .+ +.++.+++|++|++++|++++..|  
T Consensus       308 ~l~~L~ls~n~l~~l-~--~l~~l~~L~~L~L~~n~l~-------------~l-~~l~~l~~L~~L~l~~N~l~~l~~--  368 (384)
T d2omza2         308 NLTYLTLYFNNISDI-S--PVSSLTKLQRLFFANNKVS-------------DV-SSLANLTNINWLSAGHNQISDLTP--  368 (384)
T ss_dssp             TCSEEECCSSCCSCC-G--GGGGCTTCCEEECCSSCCC-------------CC-GGGGGCTTCCEEECCSSCCCBCGG--
T ss_pred             ccCeEECCCCCCCCC-c--ccccCCCCCEEECCCCCCC-------------CC-hhHcCCCCCCEEECCCCcCCCChh--
Confidence            566677777776643 2  2566677777777777665             23 358889999999999999996544  


Q ss_pred             hhCccccCceeccccc
Q 047948          139 VGQLTFLNHLILDLIF  154 (171)
Q Consensus       139 ~~~l~~L~~L~Ls~N~  154 (171)
                      +.++++|+.|+|++|.
T Consensus       369 l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         369 LANLTRITQLGLNDQA  384 (384)
T ss_dssp             GTTCTTCSEEECCCEE
T ss_pred             hccCCCCCEeeCCCCc
Confidence            8899999999999984

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.52  E-value=1.1e-09  Score=78.08  Aligned_cols=87  Identities=22%  Similarity=0.195  Sum_probs=54.8

Q ss_pred             CCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecccCcccccCChhhhCcccc
Q 047948           78 PFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL  145 (171)
Q Consensus        78 ~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L  145 (171)
                      ++..|++|++|++++|+++. ++ .+            +|.+. .+|..+..++.|+.|++++|+++ .++ .+..+++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L  117 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHS
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccc
Confidence            57789999999999999873 22 12            45544 34443344456677777777666 332 35666677


Q ss_pred             Cceeccccccc-------cccchhhhccccc
Q 047948          146 NHLILDLIFLI-------FWMVQSLVLLAIW  169 (171)
Q Consensus       146 ~~L~Ls~N~l~-------~~~~~~L~~L~l~  169 (171)
                      ++|++++|+++       ...+++|+.|++.
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~  148 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred             cccccccchhccccccccccCCCccceeecC
Confidence            77777777665       2334566666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=9e-08  Score=68.77  Aligned_cols=75  Identities=16%  Similarity=0.270  Sum_probs=58.8

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE  138 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~  138 (171)
                      +++.+++.++.+... +  .+..+++|+.|++++|++++             ++ .+..+++|++|++++|+++ .+|+ 
T Consensus       152 ~L~~L~l~~n~~~~~-~--~l~~l~~L~~L~Ls~n~l~~-------------l~-~l~~l~~L~~L~Ls~N~lt-~i~~-  212 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDL-T--PLANLSKLTTLKADDNKISD-------------IS-PLASLPNLIEVHLKNNQIS-DVSP-  212 (227)
T ss_dssp             TCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCC-------------CG-GGGGCTTCCEEECTTSCCC-BCGG-
T ss_pred             ccccccccccccccc-h--hhcccccceecccCCCccCC-------------Ch-hhcCCCCCCEEECcCCcCC-CCcc-
Confidence            577888888876532 2  36778888888888887762             32 3788999999999999999 5654 


Q ss_pred             hhCccccCceeccc
Q 047948          139 VGQLTFLNHLILDL  152 (171)
Q Consensus       139 ~~~l~~L~~L~Ls~  152 (171)
                      +.++++|++|++++
T Consensus       213 l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         213 LANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEEEEE
T ss_pred             cccCCCCCEEEeeC
Confidence            88999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.29  E-value=6e-07  Score=67.35  Aligned_cols=86  Identities=28%  Similarity=0.347  Sum_probs=54.5

Q ss_pred             CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc---------cccccccCCccccCCcCCCEEecccC
Q 047948           59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TNKLSGQIPSEIGLLTHLTVLHISRN  129 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n~l~g~~p~~~~~l~~L~~L~ls~N  129 (171)
                      ++++|+|++++++ .+|+ .   ++.|++|++++|+++ .+|..+         .|++. .++. +  .+.|++|++++|
T Consensus        39 ~l~~LdLs~~~L~-~lp~-~---~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n  108 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE-L---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNN  108 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS-C---CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSS
T ss_pred             CCCEEEeCCCCCC-CCCC-C---CCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccc-hhhh-h--cccccccccccc
Confidence            4566677776665 4554 2   345666677766665 444333         23322 1221 1  146889999999


Q ss_pred             cccccCChhhhCccccCceeccccccc
Q 047948          130 QLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       130 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .++ .+|. ++.++.|++|++++|.+.
T Consensus       109 ~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         109 QLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccc-cccc-hhhhccceeecccccccc
Confidence            888 6775 577888999999888876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.28  E-value=1.1e-06  Score=65.78  Aligned_cols=48  Identities=27%  Similarity=0.234  Sum_probs=34.9

Q ss_pred             CcCCCEEecccCcccccCChhhhCccccCceeccccccc--cccchhhhccccc
Q 047948          118 LTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI--FWMVQSLVLLAIW  169 (171)
Q Consensus       118 l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~--~~~~~~L~~L~l~  169 (171)
                      +++|++|++++|+++ .+|..   +++|+.|++++|+|+  ...+.+|++|++.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~  332 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAEVPELPQNLKQLHVE  332 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCccccccCCCCEEECc
Confidence            467899999999888 77754   456777888888777  3345677777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.8e-07  Score=64.10  Aligned_cols=66  Identities=29%  Similarity=0.289  Sum_probs=45.9

Q ss_pred             CCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh-hhhCccccCceeccccccc
Q 047948           80 SSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ-EVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus        80 ~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~-~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ..++.|++|++++|+++..-          .++..+..+++|+.|++++|.++ .+++ .+.....|+.|++++|++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~----------~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLD----------DMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCS----------GGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCc----------hhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            45678888888888886321          12344567788888888888888 4444 3334456888888888886

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=8.8e-06  Score=58.25  Aligned_cols=98  Identities=15%  Similarity=0.113  Sum_probs=57.7

Q ss_pred             eeCCCCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCc-cccCCc
Q 047948           53 HCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPS-EIGLLT  119 (171)
Q Consensus        53 ~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~-~~~~l~  119 (171)
                      .|.+.+  +.++..+.+++ .+|. .+.  +.+++|++++|.++...+..+            +|.+...+|. .|..++
T Consensus         5 ~C~C~~--~~i~c~~~~l~-~iP~-~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~   78 (242)
T d1xwdc1           5 ICHCSN--RVFLCQESKVT-EIPS-DLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP   78 (242)
T ss_dssp             SEEECS--SEEEEESCSCS-SCCS-CSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT
T ss_pred             cCCCcC--CEEEEeCCCCC-CcCC-CCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc
Confidence            355444  35667777777 7776 553  578999999999974333222            3444433332 345555


Q ss_pred             CCCEEeccc-CcccccCChhhhCccccCceeccccccc
Q 047948          120 HLTVLHISR-NQLNGSIPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       120 ~L~~L~ls~-N~l~g~~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .++++++.. |++....+..|.++++|+++++++|.+.
T Consensus        79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhc
Confidence            555555442 4455444455566666666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.7e-07  Score=70.72  Aligned_cols=38  Identities=21%  Similarity=0.251  Sum_probs=22.5

Q ss_pred             cCCCEEecccCccccc----CChhhhCccccCceeccccccc
Q 047948          119 THLTVLHISRNQLNGS----IPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       119 ~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      .+|+.|++++|+++..    ++..+..+++|++|++++|.+.
T Consensus        84 ~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          84 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            3566666666666532    3344555666666666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2e-06  Score=63.84  Aligned_cols=54  Identities=28%  Similarity=0.314  Sum_probs=39.5

Q ss_pred             cCCcCCCEEecccC-cccccCChhhhCccccCceeccc-cccc------cccchhhhccccc
Q 047948          116 GLLTHLTVLHISRN-QLNGSIPQEVGQLTFLNHLILDL-IFLI------FWMVQSLVLLAIW  169 (171)
Q Consensus       116 ~~l~~L~~L~ls~N-~l~g~~P~~~~~l~~L~~L~Ls~-N~l~------~~~~~~L~~L~l~  169 (171)
                      ..+++|++|+++++ .+++..+..+.++++|++|++++ +.++      ...+++|+.|+++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeee
Confidence            45688999999875 57777777888888999999987 4565      2334567777664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=6e-06  Score=61.14  Aligned_cols=97  Identities=18%  Similarity=0.168  Sum_probs=68.1

Q ss_pred             CEEEEEcCCCcccee-cCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccC-ccccc-C
Q 047948           59 RVVGINLTSMSLNGT-LLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRN-QLNGS-I  135 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~-~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N-~l~g~-~  135 (171)
                      ++++++++++.+... +.. -+..+++|++|+++++.++.            ..+..++.+++|++|+++++ .++.. +
T Consensus        47 ~L~~LdLs~~~i~~~~l~~-l~~~c~~L~~L~L~~~~l~~------------~~~~~l~~~~~L~~L~Ls~c~~itd~~l  113 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSD------------PIVNTLAKNSNLVRLNLSGCSGFSEFAL  113 (284)
T ss_dssp             CCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCH------------HHHHHHTTCTTCSEEECTTCBSCCHHHH
T ss_pred             CCCEEECCCCccCHHHHHH-HHHhCCCcccccccccCCCc------------HHHHHHhcCCCCcCcccccccccccccc
Confidence            688999998877643 233 46778899999999887764            23356778899999999984 55532 3


Q ss_pred             ChhhhCccccCceecccc-ccc--------cccchhhhcccc
Q 047948          136 PQEVGQLTFLNHLILDLI-FLI--------FWMVQSLVLLAI  168 (171)
Q Consensus       136 P~~~~~l~~L~~L~Ls~N-~l~--------~~~~~~L~~L~l  168 (171)
                      ...+..+++|++|+++++ .++        ....+.|+.|++
T Consensus       114 ~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l  155 (284)
T d2astb2         114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  155 (284)
T ss_dssp             HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             chhhHHHHhccccccccccccccccchhhhcccccccchhhh
Confidence            333467899999999874 454        222456777765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.4e-06  Score=58.27  Aligned_cols=78  Identities=21%  Similarity=0.164  Sum_probs=57.9

Q ss_pred             CCEEEEEcCCCcccee--cCCCCCCCCCCCcEEEeecCcccccccccccccccccCCc-cccCCcCCCEEecccCccccc
Q 047948           58 GRVVGINLTSMSLNGT--LLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPS-EIGLLTHLTVLHISRNQLNGS  134 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~--~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~-~~~~l~~L~~L~ls~N~l~g~  134 (171)
                      ..+++|+|++|+++..  ++. .+..++.|+.|++++|.++.             +++ .......|+.|++++|.+...
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~-~~~~l~~L~~L~Ls~N~i~~-------------l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKS-------------ERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGT-HHHHSTTCCCCCCTTSCCCC-------------GGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCCEeeCCCccccCCchhHH-HHhhCCcccccccccCcccc-------------chhhhhhhccccceeecCCCCcCcC
Confidence            3799999999999843  233 45678999999999999872             222 223445799999999999866


Q ss_pred             CChh-------hhCccccCcee
Q 047948          135 IPQE-------VGQLTFLNHLI  149 (171)
Q Consensus       135 ~P~~-------~~~l~~L~~L~  149 (171)
                      ....       +..+|+|++||
T Consensus       131 ~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         131 FRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccchhHHHHHHHHCCCCCEEC
Confidence            5532       45678888876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.56  E-value=7.6e-06  Score=61.81  Aligned_cols=89  Identities=16%  Similarity=0.103  Sum_probs=48.1

Q ss_pred             CEEEEEcCCCcccee-----cCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccc
Q 047948           59 RVVGINLTSMSLNGT-----LLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNG  133 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~-----~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g  133 (171)
                      .++.++++.|++...     +.. .+..++.|+.|++++|.+...-.        ..+...+...+.|++|++++|.+++
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~-~l~~~~~L~~L~Ls~N~i~~~g~--------~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLE-GLAYCQELKVLDLQDNTFTHLGS--------SALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHT-TGGGCTTCCEEECCSSCCHHHHH--------HHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhcccccccccccccccccchhh-hhcchhhhccccccccccccccc--------ccccccccccccchhhhhhcCccCc
Confidence            567777777776521     223 45667777788887777642100        0122334455666666666666654


Q ss_pred             cCChhh----hC--ccccCceeccccccc
Q 047948          134 SIPQEV----GQ--LTFLNHLILDLIFLI  156 (171)
Q Consensus       134 ~~P~~~----~~--l~~L~~L~Ls~N~l~  156 (171)
                      .-...+    ..  .+.|++|++++|+++
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            322222    21  234666666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=6.9e-06  Score=63.30  Aligned_cols=102  Identities=16%  Similarity=0.125  Sum_probs=65.4

Q ss_pred             CEEEEEcCCCccceec-CCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCccccc---
Q 047948           59 RVVGINLTSMSLNGTL-LEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGS---  134 (171)
Q Consensus        59 ~v~~L~l~~~~l~~~~-p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~---  134 (171)
                      +|+.|+++.+++++.. .. -+..+++++.|+|++|.++-.--        ..+...+..+++|+.||+++|.++..   
T Consensus         3 ~l~~ld~~~~~i~~~~~~~-l~~~l~~l~~L~L~~~~i~~~~~--------~~l~~~L~~~~~L~~LdLs~N~i~~~~~~   73 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAE-LLPLLQQCQVVRLDDCGLTEARC--------KDISSALRVNPALAELNLRSNELGDVGVH   73 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHH-HHHHHTTCSEEEEESSCCCHHHH--------HHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             CCCEEEeeCCcCChHHHHH-HHHhCCCCCEEEeCCCCCCHHHH--------HHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence            4788899888887431 11 24456788889999887752100        12334567788899999999887631   


Q ss_pred             -CChhhh-CccccCceecccccccc----------ccchhhhccccc
Q 047948          135 -IPQEVG-QLTFLNHLILDLIFLIF----------WMVQSLVLLAIW  169 (171)
Q Consensus       135 -~P~~~~-~l~~L~~L~Ls~N~l~~----------~~~~~L~~L~l~  169 (171)
                       +...+. ...+|++|+|++|+++.          ...++|++|++.
T Consensus        74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~  120 (460)
T d1z7xw1          74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS  120 (460)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECC
T ss_pred             HHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccc
Confidence             122222 22468899999988861          234567777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.42  E-value=6.3e-06  Score=62.28  Aligned_cols=44  Identities=18%  Similarity=0.206  Sum_probs=35.1

Q ss_pred             ccccCCcCCCEEecccCccccc----CChhhhCccccCceeccccccc
Q 047948          113 SEIGLLTHLTVLHISRNQLNGS----IPQEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       113 ~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ..+..++.|+.|++++|.++..    +...+..++.|++|++++|.++
T Consensus       209 ~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         209 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            3456778899999999998743    4455678889999999999987

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.40  E-value=0.00064  Score=45.93  Aligned_cols=90  Identities=16%  Similarity=0.099  Sum_probs=62.0

Q ss_pred             CCEEEEEcCCC-cccee----cCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCccc
Q 047948           58 GRVVGINLTSM-SLNGT----LLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLN  132 (171)
Q Consensus        58 ~~v~~L~l~~~-~l~~~----~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~  132 (171)
                      ..++.|+|+++ .+...    +-. .+...+.|+.|++++|.+.....        -.+-..+...+.|+.|++++|.++
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~-~L~~n~~L~~L~Ls~n~l~~~~~--------~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEA--------RGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHH--------TTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHH-HHhhCCccceeeccccccchhHH--------HHHhhhhhhcccccceeeehhhcc
Confidence            47899999874 45422    233 46677889999999998863211        112234456688999999999998


Q ss_pred             ccCC----hhhhCccccCceeccccccc
Q 047948          133 GSIP----QEVGQLTFLNHLILDLIFLI  156 (171)
Q Consensus       133 g~~P----~~~~~l~~L~~L~Ls~N~l~  156 (171)
                      ..--    ..+...++|++|++++|.+.
T Consensus        86 ~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          86 PELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             hHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            5322    23556688999999988654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.38  E-value=0.00024  Score=48.13  Aligned_cols=90  Identities=9%  Similarity=0.060  Sum_probs=60.2

Q ss_pred             CCEEEEEcCCCccceecCC---CCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCccccc
Q 047948           58 GRVVGINLTSMSLNGTLLE---FPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGS  134 (171)
Q Consensus        58 ~~v~~L~l~~~~l~~~~p~---~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~  134 (171)
                      ..+++|++++|.+......   ..+..-+.|+.|++++|.+...--       . .+-..+...+.|++|++++|.+...
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~-------~-~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL-------A-RLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH-------H-HHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH-------H-HHHHHHHhCCcCCEEECCCCcCCCc
Confidence            4799999999998743222   023445789999999998863211       0 1223456678899999998876521


Q ss_pred             -------CChhhhCccccCceecccccc
Q 047948          135 -------IPQEVGQLTFLNHLILDLIFL  155 (171)
Q Consensus       135 -------~P~~~~~l~~L~~L~Ls~N~l  155 (171)
                             +...+..-++|+.|+++.+..
T Consensus       116 g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         116 GNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence                   233445568899999877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.99  E-value=0.003  Score=42.23  Aligned_cols=18  Identities=0%  Similarity=-0.062  Sum_probs=9.6

Q ss_pred             CCCCCCCcEEEeecCccc
Q 047948           79 FSSFPHLAYLVLYNNELF   96 (171)
Q Consensus        79 l~~L~~L~~L~l~~n~l~   96 (171)
                      +...+.|+.|++++|.+.
T Consensus        42 l~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             HTTCCSCCEEECTTSCCC
T ss_pred             HhcCCccCeeeccCCccc
Confidence            334455556666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.26  E-value=0.014  Score=38.72  Aligned_cols=69  Identities=16%  Similarity=0.102  Sum_probs=43.1

Q ss_pred             CCCCCCcEEEeec-CcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh----hhhCccccCceeccccc
Q 047948           80 SSFPHLAYLVLYN-NELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ----EVGQLTFLNHLILDLIF  154 (171)
Q Consensus        80 ~~L~~L~~L~l~~-n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~----~~~~l~~L~~L~Ls~N~  154 (171)
                      .+.+.|++|++++ +.++...-        ..+-..+...+.|+.|++++|.++..--.    .+...++++.+++++|.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~--------~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTL--------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHH--------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHH--------HHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            3457888999987 34531100        01223455678888888888887643222    34455778888888887


Q ss_pred             cc
Q 047948          155 LI  156 (171)
Q Consensus       155 l~  156 (171)
                      +.
T Consensus        86 ~~   87 (166)
T d1io0a_          86 IS   87 (166)
T ss_dssp             CC
T ss_pred             cc
Confidence            76