Citrus Sinensis ID: 047957


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
MLKLPLSLRTTMCLLFLFISFNSGGKLKMASAQRTWCIANPLTNISALLGNLDFACSHVDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGSGEYILQQNINYACNYVDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLVVVNDPSKS
cccccccHHHHHHHHHHHHHHcccccccccccccccEEEcccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccEEEEccccccc
ccccHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccccccEEEEEcccccccEEEccccccccccccccEEEEEcccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccc
MLKLPLSLRTTMCLLFLFISFnsggklkmaSAQRTWCIANPLTNISALLGNLDFACSHVDcqliqqggscfypntpihhaSFAMNLYFQVMGrhsshcdfrgsglisltdpsyescsfhsegdlaeappsatwcvakpgsgeyILQQNINyacnyvdcspthdggscfnpttlinHASFAMNLYYqtsakntascdfrnsglvvvndpsks
MLKLPLSLRTTMCLLFLFISFNSGGKLKMASAQRTWCIANPLTNISALLGNLDFACSHVDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGSGEYILQQNINYACNYVDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTascdfrnsglvvvndpsks
MLKLPLSLRTTMCLLFLFISFNSGGKLKMASAQRTWCIANPLTNISALLGNLDFACSHVDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGSGEYILQQNINYACNYVDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLVVVNDPSKS
*****LSLRTTMCLLFLFISFNSGGKLKMASAQRTWCIANPLTNISALLGNLDFACSHVDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSF***********SATWCVAKPGSGEYILQQNINYACNYVDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLVVV******
*******LRTTMCLLFLFISFNSGGKLKMASAQRTWCIANPLTNISALLGNLDFACSHVDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPS*************ILQQNINYACNYVDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLV*VN*****
MLKLPLSLRTTMCLLFLFISFNSGGKLKMASAQRTWCIANPLTNISALLGNLDFACSHVDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGSGEYILQQNINYACNYVDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLVVVNDPSKS
MLKLPLSLRTTMCLLFLFISFNSGGKLKMASAQRTWCIANPLTNISALLGNLDFACSHVDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGSGEYILQQNINYACNYVDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLVVVND****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLKLPLSLRTTMCLLFLFISFNSGGKLKMASAQRTWCIANPLTNISALLGNLDFACSHVDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGSGEYILQQNINYACNYVDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLVVVNDPSKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query211 2.2.26 [Sep-21-2011]
P52409461 Glucan endo-1,3-beta-gluc N/A no 0.364 0.167 0.519 5e-19
Q94G86460 Glucan endo-1,3-beta-D-gl N/A no 0.407 0.186 0.448 3e-17
Q84V39123 Major pollen allergen Ole N/A no 0.412 0.707 0.449 7e-16
Q9ZU91501 Glucan endo-1,3-beta-gluc no no 0.454 0.191 0.377 1e-14
O65399511 Glucan endo-1,3-beta-gluc no no 0.492 0.203 0.415 1e-14
Q9M069504 Glucan endo-1,3-beta-gluc no no 0.393 0.164 0.392 2e-14
Q9SD84194 Glucan endo-1,3-beta-gluc no no 0.379 0.412 0.419 1e-12
Q9C7U5505 Glucan endo-1,3-beta-gluc no no 0.459 0.192 0.343 6e-12
Q9FJU9506 Glucan endo-1,3-beta-gluc no no 0.412 0.171 0.415 6e-12
Q8VYE5534 Glucan endo-1,3-beta-gluc no no 0.402 0.159 0.390 8e-12
>sp|P52409|E13B_WHEAT Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1 Back     alignment and function desciption
 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 52/77 (67%)

Query: 133 WCVAKPGSGEYILQQNINYACNYVDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNT 192
           WCVAK G+    LQ NINYAC +VDC P   GG+CF+P +L  HAS+ MN YYQ +    
Sbjct: 377 WCVAKDGANGTDLQNNINYACGFVDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTD 436

Query: 193 ASCDFRNSGLVVVNDPS 209
            +CDF+ +G+V  +DPS
Sbjct: 437 LACDFKGTGIVTSSDPS 453




Is thought to be an important plant defense-related product against fungal pathogens.
Triticum aestivum (taxid: 4565)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 9
>sp|Q94G86|ALL9_OLEEU Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea GN=OLE9 PE=1 SV=1 Back     alignment and function description
>sp|Q84V39|ALL10_OLEEU Major pollen allergen Ole e 10 OS=Olea europaea PE=1 SV=1 Back     alignment and function description
>sp|Q9ZU91|E133_ARATH Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2 Back     alignment and function description
>sp|O65399|E131_ARATH Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3 Back     alignment and function description
>sp|Q9M069|E137_ARATH Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2 Back     alignment and function description
>sp|Q9SD84|E13L3_ARATH Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1 Back     alignment and function description
>sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2 Back     alignment and function description
>sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1 Back     alignment and function description
>sp|Q8VYE5|E1312_ARATH Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
255557383216 hypothetical protein RCOM_0633850 [Ricin 0.947 0.925 0.6 8e-70
255557381203 hypothetical protein RCOM_0633840 [Ricin 0.843 0.876 0.442 2e-39
414886988 647 TPA: putative O-glycosyl hydrolase famil 0.777 0.253 0.446 3e-33
326528883306 predicted protein [Hordeum vulgare subsp 0.843 0.581 0.412 3e-32
33146691 504 putative beta-1,3-glucanase precursor [O 0.843 0.353 0.380 3e-31
222637206 558 hypothetical protein OsJ_24595 [Oryza sa 0.843 0.318 0.380 3e-31
115472579 602 Os07g0539900 [Oryza sativa Japonica Grou 0.843 0.295 0.380 3e-31
218199777 558 hypothetical protein OsI_26347 [Oryza sa 0.843 0.318 0.380 3e-31
326490716 1010 predicted protein [Hordeum vulgare subsp 0.781 0.163 0.391 5e-31
242050448 581 hypothetical protein SORBIDRAFT_02g03549 0.824 0.299 0.393 7e-31
>gi|255557383|ref|XP_002519722.1| hypothetical protein RCOM_0633850 [Ricinus communis] gi|223541139|gb|EEF42695.1| hypothetical protein RCOM_0633850 [Ricinus communis] Back     alignment and taxonomy information
 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 155/205 (75%), Gaps = 5/205 (2%)

Query: 10  TTMCLLFLFISFNSGGKLKMASAQRTWCIANPLTNISALLGNLDFACSHVDCQLIQQGGS 69
           +T+C+L +   FNSG  LK+A AQRTWCIANP T+ + L+ NLD+ACSHV C LIQQG S
Sbjct: 6   STLCMLLMLSCFNSGAYLKVADAQRTWCIANPSTSNTELIANLDYACSHVGCSLIQQGSS 65

Query: 70  CFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEA-- 127
           CFYPN  +HHASFAMNLY+Q  GRH S C+F  SGLIS +DPS+ SC++ + G + E+  
Sbjct: 66  CFYPNNYLHHASFAMNLYYQRSGRHRSDCNFSNSGLISFSDPSFRSCNYETGGGIVESHR 125

Query: 128 ---PPSATWCVAKPGSGEYILQQNINYACNYVDCSPTHDGGSCFNPTTLINHASFAMNLY 184
                S TWCVAKP +   +LQ+NIN+ACN+VDC+P  DGG C+NPTTL+NHASFAMNLY
Sbjct: 126 SENQTSETWCVAKPATENSMLQENINFACNHVDCTPIQDGGPCYNPTTLVNHASFAMNLY 185

Query: 185 YQTSAKNTASCDFRNSGLVVVNDPS 209
           YQT+ +   SCDF+ SGL+V  +PS
Sbjct: 186 YQTTQRTNTSCDFKGSGLIVNRNPS 210




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557381|ref|XP_002519721.1| hypothetical protein RCOM_0633840 [Ricinus communis] gi|223541138|gb|EEF42694.1| hypothetical protein RCOM_0633840 [Ricinus communis] Back     alignment and taxonomy information
>gi|414886988|tpg|DAA63002.1| TPA: putative O-glycosyl hydrolase family 17 protein [Zea mays] Back     alignment and taxonomy information
>gi|326528883|dbj|BAJ97463.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|33146691|dbj|BAC80125.1| putative beta-1,3-glucanase precursor [Oryza sativa Japonica Group] gi|50509692|dbj|BAD31728.1| putative beta-1,3-glucanase precursor [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222637206|gb|EEE67338.1| hypothetical protein OsJ_24595 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115472579|ref|NP_001059888.1| Os07g0539900 [Oryza sativa Japonica Group] gi|113611424|dbj|BAF21802.1| Os07g0539900 [Oryza sativa Japonica Group] gi|215701321|dbj|BAG92745.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704389|dbj|BAG93823.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218199777|gb|EEC82204.1| hypothetical protein OsI_26347 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|326490716|dbj|BAJ90025.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|242050448|ref|XP_002462968.1| hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] gi|241926345|gb|EER99489.1| hypothetical protein SORBIDRAFT_02g035490 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
TAIR|locus:2039742549 AT2G39640 [Arabidopsis thalian 0.834 0.320 0.375 1e-34
TAIR|locus:2043979121 AT2G43670 "AT2G43670" [Arabido 0.502 0.876 0.468 2.9e-25
TAIR|locus:2202945115 AT1G78520 "AT1G78520" [Arabido 0.507 0.930 0.449 1.6e-22
TAIR|locus:4515103363116 AT4G09464 "AT4G09464" [Arabido 0.530 0.965 0.412 1.3e-20
TAIR|locus:4010713875116 AT4G09465 "AT4G09465" [Arabido 0.530 0.965 0.412 1.3e-20
TAIR|locus:4515103365116 AT4G09467 "AT4G09467" [Arabido 0.530 0.965 0.412 1.3e-20
TAIR|locus:4515103362114 AT4G09462 "AT4G09462" [Arabido 0.502 0.929 0.435 2.7e-20
TAIR|locus:2043999123 AT2G43660 "AT2G43660" [Arabido 0.421 0.723 0.483 7.2e-20
TAIR|locus:2168621111 AT5G53600 "AT5G53600" [Arabido 0.526 1.0 0.391 1.2e-19
TAIR|locus:4515103364116 AT4G09466 "AT4G09466" [Arabido 0.530 0.965 0.394 3.1e-19
TAIR|locus:2039742 AT2G39640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 353 (129.3 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
 Identities = 68/181 (37%), Positives = 97/181 (53%)

Query:    36 WCIANPLTNISALLGNLDFACSH-VDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGRH 94
             WC+  P   +  L  N+D+ CSH +DC  I  GG CF  N     +SF MN Y+Q  G  
Sbjct:   359 WCVGKPEATLMQLQANIDWVCSHGIDCTPISPGGICFDNNNMTTRSSFIMNAYYQSKGCV 418

Query:    95 SSHCDFRGSGLISLTDPSYESCSF---HSEGDLAEAPPSATWCVAKPGSGEYILQQNINY 151
                CDF G+G+++ T+PS  +C        G       SA WC+AK  + E  LQ NI++
Sbjct:   419 DVVCDFSGTGIVTSTNPSTSTCPIPIGEGGGGNGAKSKSANWCMAKQEATETQLQANIDW 478

Query:   152 ACNY-VDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLVVVNDPSK 210
              C+  +DC P   GG CF+   +   ++F MN YY++   +  +CDFR SG+V   +PS 
Sbjct:   479 VCSQGIDCKPISPGGICFDNNNMKTRSTFIMNAYYESKGYSKDACDFRGSGIVTTTNPST 538

Query:   211 S 211
             S
Sbjct:   539 S 539


GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0043169 "cation binding" evidence=IEA
TAIR|locus:2043979 AT2G43670 "AT2G43670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202945 AT1G78520 "AT1G78520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515103363 AT4G09464 "AT4G09464" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4010713875 AT4G09465 "AT4G09465" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515103365 AT4G09467 "AT4G09467" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515103362 AT4G09462 "AT4G09462" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043999 AT2G43660 "AT2G43660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168621 AT5G53600 "AT5G53600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515103364 AT4G09466 "AT4G09466" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
smart0076885 smart00768, X8, Possibly involved in carbohydrate 2e-31
smart0076885 smart00768, X8, Possibly involved in carbohydrate 7e-28
pfam0798377 pfam07983, X8, X8 domain 1e-15
pfam0798377 pfam07983, X8, X8 domain 1e-15
>gnl|CDD|197867 smart00768, X8, Possibly involved in carbohydrate binding Back     alignment and domain information
 Score =  109 bits (275), Expect = 2e-31
 Identities = 42/85 (49%), Positives = 52/85 (61%), Gaps = 1/85 (1%)

Query: 35  TWCIANPLTNISALLGNLDFACSH-VDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGR 93
            WC+A P  + +AL   LD+AC    DC  IQ GGSC+ PNT   HAS+A N Y+Q  G+
Sbjct: 1   LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQ 60

Query: 94  HSSHCDFRGSGLISLTDPSYESCSF 118
            S  CDF G+  I+ TDPS  SC F
Sbjct: 61  SSGACDFSGTATITTTDPSTGSCKF 85


The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. Length = 85

>gnl|CDD|197867 smart00768, X8, Possibly involved in carbohydrate binding Back     alignment and domain information
>gnl|CDD|219681 pfam07983, X8, X8 domain Back     alignment and domain information
>gnl|CDD|219681 pfam07983, X8, X8 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 211
smart0076885 X8 Possibly involved in carbohydrate binding. The 99.97
smart0076885 X8 Possibly involved in carbohydrate binding. The 99.96
PF0798378 X8: X8 domain; InterPro: IPR012946 The X8 domain [ 99.92
PF0798378 X8: X8 domain; InterPro: IPR012946 The X8 domain [ 99.88
>smart00768 X8 Possibly involved in carbohydrate binding Back     alignment and domain information
Probab=99.97  E-value=5.4e-31  Score=194.46  Aligned_cols=80  Identities=43%  Similarity=0.930  Sum_probs=77.9

Q ss_pred             ceeeeCCCCChhHHHHHHHhhcCC-CcCCcCCCCCCCCCCCChhhhHhHHHHHHHHhcCCCCCCCCCCCceEEEccCCCC
Q 047957          132 TWCVAKPGSGEYILQQNINYACNY-VDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLVVVNDPSK  210 (211)
Q Consensus       132 ~~CV~~~~~~~~~l~~~l~yaCg~-~dC~~I~~~g~c~~~~~~~~~~sya~N~Yy~~~~~~~~aCdF~G~a~~~~~dps~  210 (211)
                      +|||+|+++++++||++|||||++ +||++|++||+||+|+++++|||||||+|||++++.+++|||+|.|+++++|||+
T Consensus         1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~   80 (85)
T smart00768        1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST   80 (85)
T ss_pred             CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence            599999999999999999999999 9999999999999999999999999999999999999999999999999999996


Q ss_pred             C
Q 047957          211 S  211 (211)
Q Consensus       211 ~  211 (211)
                      +
T Consensus        81 ~   81 (85)
T smart00768       81 G   81 (85)
T ss_pred             C
Confidence            3



The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.

>smart00768 X8 Possibly involved in carbohydrate binding Back     alignment and domain information
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges Back     alignment and domain information
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
2jon_A101 Solution Structure Of The C-Terminal Domain Ole E 9 1e-18
2jon_A101 Solution Structure Of The C-Terminal Domain Ole E 9 5e-16
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 Length = 101 Back     alignment and structure

Iteration: 1

Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 1/90 (1%) Query: 32 AQRTWCIANPLTNISALLGNLDFACSH-VDCQLIQQGGSCFYPNTPIHHASFAMNLYFQV 90 A +WC+ P + L GN+++ACS +DC IQ GG+CF PNT HA++ MNLY+Q Sbjct: 9 AAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQH 68 Query: 91 MGRHSSHCDFRGSGLISLTDPSYESCSFHS 120 GR+S +CDF + ++ T+PSY +C+F S Sbjct: 69 AGRNSWNCDFSQTATLTNTNPSYGACNFPS 98
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 Length = 101 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
2jon_A101 Beta-1,3-glucanase; olive pollen, allergen; NMR {O 1e-30
2jon_A101 Beta-1,3-glucanase; olive pollen, allergen; NMR {O 9e-28
2w61_A555 GAS2P, glycolipid-anchored surface protein 2; glyc 1e-14
2w61_A555 GAS2P, glycolipid-anchored surface protein 2; glyc 6e-14
>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea} Length = 101 Back     alignment and structure
 Score =  107 bits (268), Expect = 1e-30
 Identities = 41/92 (44%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 30  ASAQRTWCIANPLTNISALLGNLDFACSH-VDCQLIQQGGSCFYPNTPIHHASFAMNLYF 88
             A  +WC+  P  +   L GN+++ACS  +DC  IQ GG+CF PNT   HA++ MNLY+
Sbjct: 7   PKAAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYY 66

Query: 89  QVMGRHSSHCDFRGSGLISLTDPSYESCSFHS 120
           Q  GR+S +CDF  +  ++ T+PSY +C+F S
Sbjct: 67  QHAGRNSWNCDFSQTATLTNTNPSYGACNFPS 98


>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea} Length = 101 Back     alignment and structure
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Length = 555 Back     alignment and structure
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Length = 555 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
2jon_A101 Beta-1,3-glucanase; olive pollen, allergen; NMR {O 100.0
2jon_A101 Beta-1,3-glucanase; olive pollen, allergen; NMR {O 99.98
2w61_A555 GAS2P, glycolipid-anchored surface protein 2; glyc 99.87
2w61_A555 GAS2P, glycolipid-anchored surface protein 2; glyc 99.86
3em5_A316 Beta-1,3-glucanase; glycoprotein, rossmann fold, ( 85.19
1aq0_A306 1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl 82.33
3ur8_A323 Glucan endo-1,3-beta-D-glucosidase; glucoside hydr 82.0
2cyg_A312 Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be 80.58
>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea} Back     alignment and structure
Probab=100.00  E-value=4.2e-33  Score=210.42  Aligned_cols=84  Identities=43%  Similarity=0.951  Sum_probs=80.6

Q ss_pred             CCCcceeeeCCCCChhHHHHHHHhhcCC-CcCCcCCCCCCCCCCCChhhhHhHHHHHHHHhcCCCCCCCCCCCceEEEcc
Q 047957          128 PPSATWCVAKPGSGEYILQQNINYACNY-VDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLVVVN  206 (211)
Q Consensus       128 ~~~~~~CV~~~~~~~~~l~~~l~yaCg~-~dC~~I~~~g~c~~~~~~~~~~sya~N~Yy~~~~~~~~aCdF~G~a~~~~~  206 (211)
                      ..+++|||+|+++++++||++|||||++ +||++|++||+||.|+++++|+|||||+|||++++..++|||+|+|+|+++
T Consensus         8 ~~~~~wCVak~~~~~~~l~~~ldyACg~gaDC~~I~~gg~Cy~p~t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~it~~   87 (101)
T 2jon_A            8 KAAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTNT   87 (101)
T ss_dssp             CCCSCEEEECTTSCHHHHHHHHHHHTTTSSSSSTTCCCSSSCSSCCTTHHHHHHHHHHHHHHTSSGGGCCSCSSEEEESS
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHHHcCCCCCccccCcCCcccCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCeEEEeec
Confidence            3467899999999999999999999998 799999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 047957          207 DPSKS  211 (211)
Q Consensus       207 dps~~  211 (211)
                      |||++
T Consensus        88 dPS~g   92 (101)
T 2jon_A           88 NPSYG   92 (101)
T ss_dssp             CCCCS
T ss_pred             CCCCC
Confidence            99874



>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea} Back     alignment and structure
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Back     alignment and structure
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Back     alignment and structure
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A* Back     alignment and structure
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A Back     alignment and structure
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A Back     alignment and structure
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00